Query 048803
Match_columns 289
No_of_seqs 176 out of 2138
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 13:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.7E-37 3.8E-42 274.5 20.1 234 30-288 309-551 (571)
2 KOG4441 Proteins containing BT 100.0 3.7E-36 8.1E-41 266.1 25.3 253 4-279 228-486 (571)
3 PHA02713 hypothetical protein; 100.0 2.4E-36 5.2E-41 268.3 21.5 233 32-288 282-538 (557)
4 PHA03098 kelch-like protein; P 100.0 1E-32 2.2E-37 246.6 23.4 187 81-278 311-497 (534)
5 PLN02153 epithiospecifier prot 100.0 1.7E-32 3.6E-37 231.8 23.0 230 33-277 8-260 (341)
6 PHA02713 hypothetical protein; 100.0 2.3E-32 5E-37 242.9 23.9 187 81-278 272-473 (557)
7 PHA02790 Kelch-like protein; P 100.0 3.9E-32 8.4E-37 238.2 24.4 170 81-278 287-456 (480)
8 TIGR03548 mutarot_permut cycli 100.0 3.2E-31 6.9E-36 222.5 21.2 228 33-283 52-318 (323)
9 PLN02193 nitrile-specifier pro 100.0 1.6E-30 3.6E-35 227.4 23.0 227 32-278 151-387 (470)
10 PLN02153 epithiospecifier prot 100.0 5E-31 1.1E-35 222.8 17.0 243 22-280 50-326 (341)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 1.7E-29 3.6E-34 214.2 24.0 191 81-278 29-267 (346)
12 TIGR03548 mutarot_permut cycli 100.0 2.6E-29 5.6E-34 210.9 23.9 185 81-278 39-233 (323)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 1E-29 2.3E-34 215.5 20.1 238 30-280 39-333 (346)
14 PRK14131 N-acetylneuraminic ac 100.0 1.5E-28 3.4E-33 209.9 23.5 227 32-278 17-289 (376)
15 KOG4693 Uncharacterized conser 100.0 5E-29 1.1E-33 191.0 16.5 208 55-278 89-312 (392)
16 PLN02193 nitrile-specifier pro 100.0 2.1E-27 4.5E-32 208.0 25.9 188 82-278 138-338 (470)
17 PRK14131 N-acetylneuraminic ac 100.0 2.8E-28 6.1E-33 208.3 19.3 234 31-278 61-353 (376)
18 PHA02790 Kelch-like protein; P 100.0 1.7E-28 3.8E-33 215.2 17.9 183 31-250 296-478 (480)
19 PHA03098 kelch-like protein; P 100.0 2.9E-28 6.2E-33 218.1 15.9 208 23-252 312-521 (534)
20 KOG4693 Uncharacterized conser 99.9 1.8E-25 3.9E-30 171.5 17.2 218 53-279 22-261 (392)
21 KOG0379 Kelch repeat-containin 99.9 1.5E-23 3.3E-28 183.2 21.0 189 82-279 89-286 (482)
22 KOG0379 Kelch repeat-containin 99.9 2.7E-21 5.8E-26 169.2 18.4 181 99-287 57-244 (482)
23 KOG4152 Host cell transcriptio 99.9 6.6E-22 1.4E-26 164.5 11.6 225 33-280 18-276 (830)
24 KOG1230 Protein containing rep 99.9 9.9E-21 2.1E-25 153.6 17.8 194 81-279 98-318 (521)
25 KOG1230 Protein containing rep 99.9 9.6E-21 2.1E-25 153.7 15.7 178 98-280 62-254 (521)
26 KOG4152 Host cell transcriptio 99.7 1.4E-15 3E-20 127.2 16.1 187 86-279 111-343 (830)
27 COG3055 Uncharacterized protei 99.6 2E-14 4.4E-19 115.5 12.4 172 94-278 28-238 (381)
28 COG3055 Uncharacterized protei 99.6 1E-13 2.2E-18 111.6 13.7 236 27-278 65-359 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 1.3E-11 2.7E-16 73.4 6.3 49 157-206 2-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.2 7.7E-11 1.7E-15 70.0 6.7 44 110-154 5-48 (50)
31 KOG2437 Muskelin [Signal trans 99.2 4E-11 8.7E-16 100.6 6.7 165 111-278 265-457 (723)
32 TIGR01640 F_box_assoc_1 F-box 99.1 2.5E-08 5.5E-13 79.7 18.4 196 71-276 5-215 (230)
33 PF01344 Kelch_1: Kelch motif; 99.0 2.5E-10 5.4E-15 66.9 3.4 47 156-203 1-47 (47)
34 PF12937 F-box-like: F-box-lik 99.0 2.5E-10 5.4E-15 66.7 3.1 43 4-46 1-43 (47)
35 PF01344 Kelch_1: Kelch motif; 99.0 9.7E-10 2.1E-14 64.4 5.6 46 205-252 1-46 (47)
36 PF13415 Kelch_3: Galactose ox 99.0 1.2E-09 2.5E-14 64.5 5.5 48 167-214 1-49 (49)
37 PF07646 Kelch_2: Kelch motif; 98.9 2.9E-09 6.2E-14 62.8 5.3 48 205-252 1-48 (49)
38 PF13415 Kelch_3: Galactose ox 98.9 7E-09 1.5E-13 61.1 6.4 48 116-164 1-48 (49)
39 PF13418 Kelch_4: Galactose ox 98.9 2.2E-09 4.8E-14 63.4 4.0 47 157-203 2-48 (49)
40 smart00612 Kelch Kelch domain. 98.9 4.8E-09 1E-13 61.4 4.6 47 169-216 1-47 (47)
41 PF07646 Kelch_2: Kelch motif; 98.8 1.3E-08 2.8E-13 60.0 6.2 47 156-203 1-49 (49)
42 PF07250 Glyoxal_oxid_N: Glyox 98.8 2.4E-07 5.2E-12 73.3 13.8 149 81-253 46-209 (243)
43 PF13418 Kelch_4: Galactose ox 98.8 1E-08 2.2E-13 60.5 4.3 43 110-153 5-48 (49)
44 smart00256 FBOX A Receptor for 98.8 1E-08 2.3E-13 58.0 4.2 39 7-45 1-39 (41)
45 PLN03215 ascorbic acid mannose 98.8 8.5E-06 1.8E-10 68.4 22.7 40 1-40 1-41 (373)
46 PF00646 F-box: F-box domain; 98.7 5.6E-09 1.2E-13 61.4 1.5 43 4-46 3-45 (48)
47 smart00612 Kelch Kelch domain. 98.6 9.1E-08 2E-12 55.8 4.7 44 118-164 1-44 (47)
48 KOG2437 Muskelin [Signal trans 98.5 1.8E-07 3.9E-12 79.2 5.3 135 143-278 238-395 (723)
49 PLN02772 guanylate kinase 98.5 1.3E-06 2.7E-11 73.7 10.2 83 156-244 24-110 (398)
50 PF13854 Kelch_5: Kelch motif 98.5 3.8E-07 8.3E-12 51.6 4.8 41 202-243 1-41 (42)
51 PLN02772 guanylate kinase 98.4 1.1E-06 2.4E-11 74.1 8.6 73 204-278 23-96 (398)
52 TIGR01640 F_box_assoc_1 F-box 98.4 2.4E-05 5.1E-10 62.6 15.0 137 134-276 14-161 (230)
53 PF07250 Glyoxal_oxid_N: Glyox 98.3 3.7E-05 7.9E-10 61.1 13.6 137 133-282 45-194 (243)
54 PF13854 Kelch_5: Kelch motif 98.3 3.1E-06 6.7E-11 47.9 5.3 41 99-143 1-41 (42)
55 KOG0281 Beta-TrCP (transducin 97.9 0.00046 9.9E-09 56.4 13.6 45 2-46 73-121 (499)
56 PF07893 DUF1668: Protein of u 97.8 0.0058 1.2E-07 51.9 19.4 111 81-201 86-216 (342)
57 PF07893 DUF1668: Protein of u 97.8 0.0031 6.7E-08 53.5 17.6 124 115-256 75-221 (342)
58 KOG2120 SCF ubiquitin ligase, 97.6 4.8E-05 1E-09 61.2 3.5 41 4-44 98-138 (419)
59 PF12768 Rax2: Cortical protei 97.5 0.0046 9.9E-08 50.6 13.4 123 120-251 2-130 (281)
60 PF03089 RAG2: Recombination a 97.5 0.015 3.3E-07 46.6 15.6 111 118-230 39-179 (337)
61 PRK11138 outer membrane biogen 97.5 0.034 7.3E-07 48.3 19.3 156 81-276 130-302 (394)
62 KOG2997 F-box protein FBX9 [Ge 97.4 0.00014 3E-09 58.7 3.1 43 4-46 107-154 (366)
63 PRK11138 outer membrane biogen 97.4 0.079 1.7E-06 46.0 20.5 167 81-276 79-264 (394)
64 PF03089 RAG2: Recombination a 97.4 0.0028 6.1E-08 50.6 9.9 109 170-279 41-175 (337)
65 KOG2055 WD40 repeat protein [G 97.0 0.026 5.7E-07 48.1 12.8 167 81-279 237-409 (514)
66 TIGR03300 assembly_YfgL outer 97.0 0.21 4.6E-06 43.0 19.9 156 81-276 115-287 (377)
67 PF13360 PQQ_2: PQQ-like domai 96.8 0.18 4E-06 40.1 18.5 158 81-275 46-219 (238)
68 PF12768 Rax2: Cortical protei 96.4 0.058 1.3E-06 44.2 10.8 103 183-288 15-126 (281)
69 PF13360 PQQ_2: PQQ-like domai 96.4 0.37 8E-06 38.3 18.0 165 81-278 3-183 (238)
70 TIGR03300 assembly_YfgL outer 96.3 0.6 1.3E-05 40.2 20.8 132 81-248 75-216 (377)
71 KOG0274 Cdc4 and related F-box 95.8 1.4 3.1E-05 39.9 20.3 43 2-44 106-148 (537)
72 PF08268 FBA_3: F-box associat 95.8 0.14 3.1E-06 36.7 9.2 82 166-251 4-89 (129)
73 PF08450 SGL: SMP-30/Gluconola 95.6 0.38 8.2E-06 38.7 12.1 174 81-282 22-210 (246)
74 PF08450 SGL: SMP-30/Gluconola 95.2 1.3 2.8E-05 35.6 15.2 172 82-275 61-244 (246)
75 PF05096 Glu_cyclase_2: Glutam 95.1 0.43 9.3E-06 38.5 10.5 109 111-243 49-158 (264)
76 PRK13684 Ycf48-like protein; P 95.1 1.5 3.2E-05 37.2 14.5 132 136-288 154-293 (334)
77 PF09910 DUF2139: Uncharacteri 95.1 1.6 3.4E-05 35.8 15.9 159 101-274 31-219 (339)
78 PF05096 Glu_cyclase_2: Glutam 94.8 0.53 1.1E-05 38.1 10.2 106 160-282 48-153 (264)
79 COG4257 Vgb Streptogramin lyas 94.4 1.5 3.3E-05 35.5 11.7 120 111-251 194-314 (353)
80 KOG0310 Conserved WD40 repeat- 94.4 0.86 1.9E-05 39.5 10.9 135 81-245 48-187 (487)
81 PRK13684 Ycf48-like protein; P 94.1 3.2 7E-05 35.2 15.3 169 90-288 75-249 (334)
82 PRK00178 tolB translocation pr 93.9 4.2 9E-05 35.8 20.8 147 81-251 223-372 (430)
83 PRK04792 tolB translocation pr 93.7 4.7 0.0001 35.8 20.8 149 81-251 242-391 (448)
84 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.5 3.8 8.2E-05 37.2 14.3 121 111-250 64-199 (527)
85 TIGR03866 PQQ_ABC_repeats PQQ- 93.1 3.7 7.9E-05 33.5 12.8 101 118-245 2-106 (300)
86 PF10282 Lactonase: Lactonase, 92.7 5.2 0.00011 34.1 13.4 177 81-277 15-212 (345)
87 PF03178 CPSF_A: CPSF A subuni 92.7 2 4.2E-05 36.2 10.7 119 117-252 42-169 (321)
88 COG4257 Vgb Streptogramin lyas 92.6 4.9 0.00011 32.8 13.7 163 82-273 125-291 (353)
89 TIGR03866 PQQ_ABC_repeats PQQ- 92.6 4.9 0.00011 32.8 17.9 135 81-245 11-148 (300)
90 PRK03629 tolB translocation pr 92.3 7.5 0.00016 34.3 20.6 149 81-251 223-372 (429)
91 PF10282 Lactonase: Lactonase, 92.2 6.1 0.00013 33.7 13.2 116 116-251 203-333 (345)
92 PF14870 PSII_BNR: Photosynthe 91.7 6.9 0.00015 32.7 12.9 171 89-288 89-266 (302)
93 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.7 10 0.00022 34.5 18.0 107 81-197 79-196 (527)
94 KOG0272 U4/U6 small nuclear ri 91.5 6.7 0.00015 33.7 11.9 141 111-279 309-452 (459)
95 cd00216 PQQ_DH Dehydrogenases 90.9 12 0.00026 33.7 16.1 109 81-198 71-191 (488)
96 KOG0278 Serine/threonine kinas 90.8 4.9 0.00011 32.2 10.0 122 81-226 165-289 (334)
97 TIGR02800 propeller_TolB tol-p 90.5 11 0.00024 32.8 21.0 148 81-251 214-363 (417)
98 PRK04043 tolB translocation pr 90.2 12 0.00027 32.8 18.0 153 81-251 213-366 (419)
99 KOG2321 WD40 repeat protein [G 90.0 5.6 0.00012 35.7 10.6 62 116-195 145-208 (703)
100 PRK04922 tolB translocation pr 90.0 13 0.00028 32.8 20.9 147 81-251 228-377 (433)
101 PF08268 FBA_3: F-box associat 89.6 3 6.5E-05 29.8 7.7 61 212-276 2-62 (129)
102 KOG2055 WD40 repeat protein [G 89.4 8.7 0.00019 33.5 11.1 97 81-194 280-376 (514)
103 KOG0316 Conserved WD40 repeat- 89.2 9.8 0.00021 30.3 11.8 94 133-245 80-176 (307)
104 TIGR03074 PQQ_membr_DH membran 88.9 22 0.00048 34.0 15.5 84 164-248 313-430 (764)
105 PF03178 CPSF_A: CPSF A subuni 88.9 9.8 0.00021 32.0 11.5 121 81-221 62-189 (321)
106 cd00200 WD40 WD40 domain, foun 88.7 10 0.00022 30.0 16.0 63 117-195 63-126 (289)
107 KOG0278 Serine/threonine kinas 88.3 9.6 0.00021 30.6 9.9 125 133-279 164-289 (334)
108 PLN02919 haloacid dehalogenase 88.1 30 0.00066 34.6 16.6 109 116-245 751-891 (1057)
109 TIGR03074 PQQ_membr_DH membran 88.1 25 0.00055 33.6 14.5 122 111-248 189-352 (764)
110 PRK05137 tolB translocation pr 87.8 19 0.00041 31.8 20.5 148 81-250 226-374 (435)
111 PF14870 PSII_BNR: Photosynthe 87.7 15 0.00033 30.7 14.0 159 90-275 46-204 (302)
112 PRK11028 6-phosphogluconolacto 87.7 16 0.00034 30.8 13.7 104 118-243 3-111 (330)
113 PF07734 FBA_1: F-box associat 87.2 11 0.00023 28.3 10.8 81 166-251 4-92 (164)
114 cd00216 PQQ_DH Dehydrogenases 86.8 23 0.0005 31.9 14.2 122 111-249 56-192 (488)
115 smart00284 OLF Olfactomedin-li 86.6 16 0.00034 29.7 14.9 154 111-282 78-249 (255)
116 PF13013 F-box-like_2: F-box-l 85.8 1.2 2.6E-05 30.8 3.4 29 4-32 22-50 (109)
117 PRK04792 tolB translocation pr 85.7 25 0.00055 31.2 18.6 104 133-250 241-346 (448)
118 cd00094 HX Hemopexin-like repe 84.7 16 0.00035 28.2 15.8 144 111-283 11-173 (194)
119 KOG2321 WD40 repeat protein [G 84.3 11 0.00025 33.9 9.3 52 81-145 155-208 (703)
120 KOG0291 WD40-repeat-containing 83.6 39 0.00086 31.7 13.3 86 81-179 414-501 (893)
121 PLN02919 haloacid dehalogenase 83.5 52 0.0011 33.0 20.3 142 116-278 694-879 (1057)
122 COG1520 FOG: WD40-like repeat 83.4 28 0.00062 29.9 14.8 146 82-250 122-278 (370)
123 PLN00181 protein SPA1-RELATED; 83.1 46 0.00099 32.1 17.6 129 81-243 555-691 (793)
124 PRK05137 tolB translocation pr 83.1 32 0.0007 30.3 15.3 103 134-250 226-330 (435)
125 KOG4341 F-box protein containi 83.0 1.3 2.8E-05 38.2 3.1 38 5-42 73-110 (483)
126 TIGR02800 propeller_TolB tol-p 82.9 31 0.00067 30.0 17.6 103 134-250 214-318 (417)
127 PRK02889 tolB translocation pr 82.8 33 0.00072 30.2 19.8 147 81-251 220-369 (427)
128 PLN00033 photosystem II stabil 82.6 33 0.00071 30.0 15.6 87 190-288 266-361 (398)
129 PTZ00421 coronin; Provisional 82.4 35 0.00077 30.8 12.1 62 168-245 138-201 (493)
130 PRK11028 6-phosphogluconolacto 82.0 29 0.00064 29.1 16.6 140 81-244 12-158 (330)
131 KOG0639 Transducin-like enhanc 81.3 21 0.00046 31.7 9.7 101 81-194 440-541 (705)
132 PTZ00420 coronin; Provisional 81.2 45 0.00098 30.7 13.0 102 118-243 139-249 (568)
133 PF02191 OLF: Olfactomedin-lik 81.1 28 0.0006 28.2 15.8 155 111-283 73-245 (250)
134 PRK00178 tolB translocation pr 80.8 39 0.00084 29.7 17.2 104 133-250 222-327 (430)
135 KOG0289 mRNA splicing factor [ 80.7 38 0.00083 29.6 13.9 102 133-252 368-472 (506)
136 KOG0294 WD40 repeat-containing 80.5 33 0.0007 28.7 10.0 93 143-252 28-123 (362)
137 KOG1036 Mitotic spindle checkp 77.9 39 0.00084 28.0 12.0 105 114-245 62-166 (323)
138 cd00200 WD40 WD40 domain, foun 77.9 32 0.00069 27.1 16.9 103 117-245 105-210 (289)
139 KOG0310 Conserved WD40 repeat- 76.8 53 0.0011 29.0 14.2 135 112-280 161-302 (487)
140 KOG0266 WD40 repeat-containing 76.6 56 0.0012 29.2 12.1 94 134-246 225-322 (456)
141 PLN00181 protein SPA1-RELATED; 73.7 90 0.0019 30.2 17.0 101 117-244 545-650 (793)
142 PF02191 OLF: Olfactomedin-lik 70.6 56 0.0012 26.5 13.0 133 81-222 89-237 (250)
143 PTZ00421 coronin; Provisional 69.5 88 0.0019 28.3 18.6 63 117-195 138-201 (493)
144 PRK01742 tolB translocation pr 69.4 80 0.0017 27.8 19.0 140 81-250 228-369 (429)
145 KOG0286 G-protein beta subunit 68.4 68 0.0015 26.6 16.2 125 134-278 166-294 (343)
146 KOG1523 Actin-related protein 67.4 75 0.0016 26.7 10.2 103 132-247 30-137 (361)
147 COG3386 Gluconolactonase [Carb 65.6 82 0.0018 26.5 15.4 145 112-278 117-277 (307)
148 KOG0308 Conserved WD40 repeat- 64.8 60 0.0013 30.0 8.7 68 114-194 127-203 (735)
149 PF13088 BNR_2: BNR repeat-lik 64.7 75 0.0016 25.7 10.2 154 112-273 114-275 (275)
150 PLN00033 photosystem II stabil 64.6 99 0.0021 27.1 17.1 74 111-199 141-214 (398)
151 KOG0649 WD40 repeat protein [G 64.5 75 0.0016 25.7 13.9 66 115-197 125-191 (325)
152 COG1520 FOG: WD40-like repeat 64.0 95 0.0021 26.7 17.2 138 81-248 78-225 (370)
153 PRK04922 tolB translocation pr 63.9 1E+02 0.0023 27.2 19.5 104 133-250 227-332 (433)
154 PF03022 MRJP: Major royal jel 63.3 86 0.0019 26.0 11.2 99 115-219 10-124 (287)
155 KOG0286 G-protein beta subunit 62.6 89 0.0019 25.9 9.8 95 166-280 107-210 (343)
156 KOG0266 WD40 repeat-containing 62.4 1.2E+02 0.0025 27.2 16.2 66 116-197 257-323 (456)
157 KOG0640 mRNA cleavage stimulat 62.4 87 0.0019 26.3 8.5 84 133-225 237-326 (430)
158 COG4880 Secreted protein conta 61.8 1.1E+02 0.0025 26.9 12.8 177 78-288 403-595 (603)
159 PF13570 PQQ_3: PQQ-like domai 59.8 16 0.00035 19.7 3.0 25 210-243 16-40 (40)
160 PLN03215 ascorbic acid mannose 56.7 1.3E+02 0.0029 26.0 16.0 136 90-251 189-355 (373)
161 PRK02889 tolB translocation pr 56.5 1.4E+02 0.0031 26.3 15.9 104 133-250 219-324 (427)
162 PF02897 Peptidase_S9_N: Proly 55.3 1.4E+02 0.0031 26.0 14.6 147 81-250 252-412 (414)
163 PF06433 Me-amine-dh_H: Methyl 54.1 34 0.00073 29.1 5.2 72 116-196 249-324 (342)
164 TIGR03032 conserved hypothetic 54.0 94 0.002 26.2 7.6 96 134-245 185-293 (335)
165 KOG3881 Uncharacterized conser 53.7 1.5E+02 0.0032 25.7 11.2 98 132-245 224-323 (412)
166 KOG0289 mRNA splicing factor [ 52.6 1.6E+02 0.0036 25.9 16.6 104 167-288 358-467 (506)
167 PRK03629 tolB translocation pr 52.5 1.7E+02 0.0036 25.9 18.8 146 81-249 267-413 (429)
168 KOG0640 mRNA cleavage stimulat 51.5 84 0.0018 26.3 6.8 87 184-280 238-328 (430)
169 KOG0318 WD40 repeat stress pro 51.5 1.9E+02 0.0041 26.2 10.3 103 115-243 453-561 (603)
170 COG2706 3-carboxymuconate cycl 51.3 1.5E+02 0.0033 25.2 14.6 156 80-251 166-332 (346)
171 PF08662 eIF2A: Eukaryotic tra 49.9 1.2E+02 0.0025 23.4 9.7 93 116-224 71-163 (194)
172 KOG3926 F-box proteins [Amino 49.5 28 0.0006 28.4 3.8 36 4-39 202-238 (332)
173 KOG0291 WD40-repeat-containing 49.3 2.4E+02 0.0053 26.9 14.4 96 166-282 360-460 (893)
174 PF12217 End_beta_propel: Cata 48.9 1.5E+02 0.0032 24.3 11.4 191 89-282 113-338 (367)
175 PF09910 DUF2139: Uncharacteri 48.2 1.6E+02 0.0036 24.6 16.8 173 50-244 42-232 (339)
176 smart00284 OLF Olfactomedin-li 47.7 1.5E+02 0.0033 24.1 12.9 133 81-222 94-242 (255)
177 PRK04043 tolB translocation pr 47.5 2E+02 0.0043 25.4 18.4 150 81-250 257-408 (419)
178 PF14781 BBS2_N: Ciliary BBSom 46.8 1.1E+02 0.0024 22.2 6.5 53 184-248 73-133 (136)
179 cd00094 HX Hemopexin-like repe 46.1 1.4E+02 0.0029 23.0 13.8 100 117-245 63-178 (194)
180 PF12217 End_beta_propel: Cata 45.6 1.7E+02 0.0037 24.0 13.1 161 111-279 79-260 (367)
181 KOG2048 WD40 repeat protein [G 44.1 2.3E+02 0.0049 26.5 9.0 101 80-195 450-551 (691)
182 KOG0296 Angio-associated migra 44.1 2.1E+02 0.0045 24.6 14.2 102 116-244 75-180 (399)
183 PF06433 Me-amine-dh_H: Methyl 43.6 56 0.0012 27.8 5.0 70 167-246 249-324 (342)
184 KOG0315 G-protein beta subunit 43.5 1.8E+02 0.0039 23.7 16.5 130 133-279 145-280 (311)
185 KOG2502 Tub family proteins [G 43.1 13 0.00028 31.3 1.2 39 3-41 44-90 (355)
186 PF08950 DUF1861: Protein of u 42.2 1.3E+02 0.0028 24.8 6.5 58 166-224 35-95 (298)
187 KOG1036 Mitotic spindle checkp 41.9 2.1E+02 0.0045 24.0 12.1 92 81-195 75-166 (323)
188 KOG0274 Cdc4 and related F-box 41.4 2.9E+02 0.0063 25.5 13.6 114 112-251 336-450 (537)
189 KOG1332 Vesicle coat complex C 40.8 1.5E+02 0.0031 24.1 6.5 54 189-251 240-296 (299)
190 PF15525 DUF4652: Domain of un 39.3 1.8E+02 0.0039 22.5 11.5 83 130-215 84-171 (200)
191 KOG0647 mRNA export protein (c 38.9 2.3E+02 0.0051 23.7 10.9 134 116-277 83-218 (347)
192 KOG0296 Angio-associated migra 37.7 2.7E+02 0.0058 24.0 15.6 135 81-245 86-223 (399)
193 COG3823 Glutamine cyclotransfe 36.5 2.2E+02 0.0047 22.6 9.6 99 166-282 54-154 (262)
194 KOG0299 U3 snoRNP-associated p 36.1 3.1E+02 0.0068 24.4 9.3 133 111-279 208-348 (479)
195 PF13088 BNR_2: BNR repeat-lik 34.0 2.5E+02 0.0054 22.6 10.9 105 166-276 117-226 (275)
196 PF02897 Peptidase_S9_N: Proly 34.0 3.2E+02 0.0069 23.8 12.6 103 134-249 252-363 (414)
197 PF11768 DUF3312: Protein of u 33.9 3.8E+02 0.0082 24.6 9.3 82 132-225 234-320 (545)
198 PF03540 TFIID_30kDa: Transcri 31.6 38 0.00082 19.8 1.6 15 5-19 1-15 (51)
199 PF03088 Str_synth: Strictosid 31.5 66 0.0014 21.3 3.0 20 233-252 36-55 (89)
200 KOG0279 G protein beta subunit 30.3 3.2E+02 0.0069 22.7 11.6 45 235-282 173-217 (315)
201 KOG0263 Transcription initiati 30.0 3.8E+02 0.0082 25.5 8.2 54 215-279 588-641 (707)
202 smart00546 CUE Domain that may 29.7 32 0.0007 18.9 1.1 17 2-18 11-27 (43)
203 COG0823 TolB Periplasmic compo 29.6 4E+02 0.0087 23.7 10.5 122 49-199 244-366 (425)
204 KOG3545 Olfactomedin and relat 29.4 3.1E+02 0.0067 22.3 12.9 163 98-282 63-243 (249)
205 PF06881 Elongin_A: RNA polyme 29.4 79 0.0017 21.8 3.2 30 2-31 2-31 (109)
206 PF02239 Cytochrom_D1: Cytochr 29.4 3.8E+02 0.0082 23.2 9.2 93 81-195 16-111 (369)
207 PF07433 DUF1513: Protein of u 29.1 3.5E+02 0.0076 22.8 11.2 99 116-225 16-121 (305)
208 KOG0318 WD40 repeat stress pro 28.3 4.6E+02 0.01 23.9 13.4 70 162-245 449-520 (603)
209 PF05924 SAMP: SAMP Motif; In 28.3 62 0.0014 14.7 1.6 11 9-19 3-13 (20)
210 KOG4499 Ca2+-binding protein R 28.1 3.3E+02 0.0071 22.1 7.8 56 161-224 216-275 (310)
211 KOG1520 Predicted alkaloid syn 28.0 4E+02 0.0088 23.1 7.7 88 104-199 114-214 (376)
212 PF08662 eIF2A: Eukaryotic tra 27.8 2.8E+02 0.0061 21.3 11.5 70 167-251 71-140 (194)
213 PF02239 Cytochrom_D1: Cytochr 26.9 2.5E+02 0.0054 24.3 6.5 95 132-245 14-111 (369)
214 PF02845 CUE: CUE domain; Int 26.5 31 0.00067 18.9 0.6 18 2-19 10-27 (42)
215 KOG1963 WD40 repeat protein [G 26.0 4E+02 0.0086 25.7 7.7 99 132-243 430-539 (792)
216 KOG0281 Beta-TrCP (transducin 25.9 4.3E+02 0.0093 22.8 7.6 90 134-244 340-430 (499)
217 PF06739 SBBP: Beta-propeller 25.9 1.2E+02 0.0026 16.3 3.0 20 159-178 15-34 (38)
218 KOG4378 Nuclear protein COP1 [ 25.8 4.4E+02 0.0096 23.9 7.5 101 73-193 179-281 (673)
219 PF09826 Beta_propel: Beta pro 25.1 5.4E+02 0.012 23.6 16.0 195 80-288 303-521 (521)
220 KOG0315 G-protein beta subunit 24.8 3.9E+02 0.0085 21.9 13.7 96 81-198 61-160 (311)
221 KOG0316 Conserved WD40 repeat- 24.8 3.8E+02 0.0082 21.8 11.9 55 81-146 123-177 (307)
222 PF09816 EAF: RNA polymerase I 24.6 1.1E+02 0.0024 21.1 3.3 28 170-197 65-92 (109)
223 PF14298 DUF4374: Domain of un 24.4 5.1E+02 0.011 23.1 7.9 63 79-146 365-428 (435)
224 KOG0263 Transcription initiati 24.3 6.3E+02 0.014 24.1 9.6 90 135-242 558-649 (707)
225 KOG0282 mRNA splicing factor [ 23.8 3E+02 0.0065 24.6 6.2 24 167-196 269-292 (503)
226 PRK10115 protease 2; Provision 23.8 6.5E+02 0.014 24.1 16.9 122 112-251 275-403 (686)
227 smart00155 PLDc Phospholipase 23.1 1E+02 0.0022 15.0 2.1 17 264-280 9-25 (28)
228 KOG0308 Conserved WD40 repeat- 23.0 2.4E+02 0.0052 26.3 5.7 65 167-245 129-204 (735)
229 PF15408 PH_7: Pleckstrin homo 22.8 85 0.0019 20.6 2.2 25 22-46 77-101 (104)
230 PF14583 Pectate_lyase22: Olig 22.7 5.2E+02 0.011 22.6 7.6 108 85-205 14-123 (386)
231 PF03022 MRJP: Major royal jel 22.5 4.5E+02 0.0098 21.8 12.4 83 161-251 5-106 (287)
232 PF05262 Borrelia_P83: Borreli 22.0 6.1E+02 0.013 23.1 8.6 82 81-173 375-456 (489)
233 PF00614 PLDc: Phospholipase D 22.0 96 0.0021 15.4 1.8 17 263-279 8-24 (28)
234 KOG0305 Anaphase promoting com 21.3 6.3E+02 0.014 23.0 11.6 92 81-191 239-330 (484)
235 PF01436 NHL: NHL repeat; Int 20.6 1.3E+02 0.0027 14.7 4.0 15 160-174 5-19 (28)
236 TIGR02658 TTQ_MADH_Hv methylam 20.5 5.6E+02 0.012 22.1 12.0 107 81-197 27-141 (352)
237 PF07433 DUF1513: Protein of u 20.1 5.4E+02 0.012 21.7 10.7 81 160-251 8-93 (305)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=274.52 Aligned_cols=234 Identities=21% Similarity=0.343 Sum_probs=192.8
Q ss_pred HhhhHHhhhcChhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCCCCCCCCCCCce
Q 048803 30 VCKGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLF 109 (289)
Q Consensus 30 v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~ 109 (289)
..+.|..+...|.-.. +..+...+..+|+.||..... ....++++|||.+++|..+++|+.+|..+
T Consensus 309 ~~~~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~----------~~l~~ve~YD~~~~~W~~~a~M~~~R~~~--- 374 (571)
T KOG4441|consen 309 KTNEWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGS----------DRLSSVERYDPRTNQWTPVAPMNTKRSDF--- 374 (571)
T ss_pred CcCcEeecCCCCcccc-cccEEEECCEEEEEccccCCC----------cccceEEEecCCCCceeccCCccCccccc---
Confidence 3456888888774322 444445666778887775311 12278999999999999999999999987
Q ss_pred eEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEE
Q 048803 110 CQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAY 189 (289)
Q Consensus 110 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 189 (289)
+++++++.||++||.++.. ..+.+++|||.+++|+.+++|+. +|..+++++ ++|+||++||.+.....++.+++|
T Consensus 375 -~v~~l~g~iYavGG~dg~~--~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~Y 449 (571)
T KOG4441|consen 375 -GVAVLDGKLYAVGGFDGEK--SLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECY 449 (571)
T ss_pred -eeEEECCEEEEEecccccc--ccccEEEecCCCCcccccCCCCc-ceeeeEEEE-ECCEEEEEcCcCCCccccceEEEE
Confidence 9999999999999998664 78899999999999999999995 787887777 599999999998776588999999
Q ss_pred EcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCceeeeeCC
Q 048803 190 DVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSN 269 (289)
Q Consensus 190 d~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 269 (289)
||.+++|+.+++|+.+|.++++++++++||++||.++.. ....+++|||.+++|..++.+. . .+...++++.++
T Consensus 450 DP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~---~~~~VE~ydp~~~~W~~v~~m~--~-~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 450 DPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS---ALSSVERYDPETNQWTMVAPMT--S-PRSAVGVVVLGG 523 (571)
T ss_pred cCCCCceeecCCcccccccceEEEECCEEEEECCccCCC---ccceEEEEcCCCCceeEcccCc--c-ccccccEEEECC
Confidence 999999999999999999999999999999999998732 4567999999999999997643 2 233345777899
Q ss_pred eEEEEeCceeeccc---------CCccc
Q 048803 270 DLYMCREGDVMALR---------CNTWQ 288 (289)
Q Consensus 270 ~ly~~GG~~~~~~~---------~~~w~ 288 (289)
+||++||+++..+. +|+|+
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred EEEEEecccCccccceeEEcCCCCCcee
Confidence 99999998765542 28886
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=266.07 Aligned_cols=253 Identities=23% Similarity=0.344 Sum_probs=194.1
Q ss_pred CCCChHHHHHHHhhcCChh----hHHHHHHHhhhHHhhhcChh-HHHHhhhcC-CCCCeEEEEeeeeccccCCCCCCCCC
Q 048803 4 IPDLPNEIALECLSRVSYK----QFATISSVCKGWKSEISRPE-FRRNRKDTR-SSEQLLFMTQARVDQSRKSGVPKRFA 77 (289)
Q Consensus 4 ~~~Lp~dl~~~il~~lp~~----~l~~~~~v~k~W~~l~~~~~-~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ 77 (289)
+|-||...+.+++...+.- ....+-.-.+.|+.+...+. ....+.... .....+++.||.... .
T Consensus 228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~----------~ 297 (571)
T KOG4441|consen 228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQ----------G 297 (571)
T ss_pred ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCC----------C
Confidence 4667777777777766511 11111122335666555332 111122221 344556666666431 1
Q ss_pred CCceeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCc
Q 048803 78 TPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRR 157 (289)
Q Consensus 78 ~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~ 157 (289)
...+.+.+|||.++.|..++++|.++..+ ++++++++||++||.+. +....+.+++||+.+++|..+++|. .+|
T Consensus 298 ~~~~~ve~yd~~~~~w~~~a~m~~~r~~~----~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~-~~R 371 (571)
T KOG4441|consen 298 QSLRSVECYDPKTNEWSSLAPMPSPRCRV----GVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMN-TKR 371 (571)
T ss_pred cccceeEEecCCcCcEeecCCCCcccccc----cEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCCcc-Ccc
Confidence 12268899999999999999999988866 89999999999999984 2247899999999999999999999 677
Q ss_pred cceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEE
Q 048803 158 MLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAE 237 (289)
Q Consensus 158 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~ 237 (289)
..+++++ ++|.||++||.++. ...+.+++||+.+++|+.+++|+.+|.++++++++|+||++||.++... .+++++
T Consensus 372 ~~~~v~~-l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~--~l~sve 447 (571)
T KOG4441|consen 372 SDFGVAV-LDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN--CLNSVE 447 (571)
T ss_pred ccceeEE-ECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc--ccceEE
Confidence 7888887 59999999999864 5678999999999999999999999999999999999999999887542 678999
Q ss_pred EEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCcee
Q 048803 238 AFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDV 279 (289)
Q Consensus 238 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~ 279 (289)
+|||.+++|+.++.+ +.. +..+++++.+++||++||+++
T Consensus 448 ~YDP~t~~W~~~~~M--~~~-R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 448 CYDPETNTWTLIAPM--NTR-RSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred EEcCCCCceeecCCc--ccc-cccceEEEECCEEEEECCccC
Confidence 999999999999985 333 344468888999999999886
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=268.33 Aligned_cols=233 Identities=15% Similarity=0.262 Sum_probs=177.6
Q ss_pred hhHHhhhcChhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCCCCCCCCCCCceeE
Q 048803 32 KGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQ 111 (289)
Q Consensus 32 k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~ 111 (289)
++|..+...|..... ......+..+|+.||..... .....+++|||.+++|..+++||.+|..+ +
T Consensus 282 ~~W~~l~~mp~~r~~-~~~a~l~~~IYviGG~~~~~----------~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~----~ 346 (557)
T PHA02713 282 MEYSVISTIPNHIIN-YASAIVDNEIIIAGGYNFNN----------PSLNKVYKINIENKIHVELPPMIKNRCRF----S 346 (557)
T ss_pred CeEEECCCCCccccc-eEEEEECCEEEEEcCCCCCC----------CccceEEEEECCCCeEeeCCCCcchhhce----e
Confidence 457777666553322 22333455566666542111 12368999999999999999999998876 8
Q ss_pred EEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCC-----------
Q 048803 112 LSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDK----------- 180 (289)
Q Consensus 112 ~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~----------- 180 (289)
+++++++||++||.++.. ..+.+++|||.+++|+.+++|+. ++..+++++ .+++||++||.+...
T Consensus 347 ~~~~~g~IYviGG~~~~~--~~~sve~Ydp~~~~W~~~~~mp~-~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTN--VERTIECYTMGDDKWKMLPDMPI-ALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EEEECCEEEEECCcCCCC--CCceEEEEECCCCeEEECCCCCc-ccccccEEE-ECCEEEEEeCCCcccccccccccccc
Confidence 899999999999986443 56789999999999999999994 555566555 599999999976421
Q ss_pred ------cccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCC-Cceeeccccc
Q 048803 181 ------NALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAA-QQWGPVEEDF 253 (289)
Q Consensus 181 ------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~ 253 (289)
...+.+++|||++++|+.+++|+.+|..+++++++|+||++||.+... ...+.+++|||.+ ++|+.++.+
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~--~~~~~ve~Ydp~~~~~W~~~~~m- 499 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEK--NVKTCIFRYNTNTYNGWELITTT- 499 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCC--ccceeEEEecCCCCCCeeEcccc-
Confidence 124679999999999999999999999999999999999999986432 1234689999999 899999974
Q ss_pred ccCCCCCCceeeeeCCeEEEEeCcee---e---cccCCccc
Q 048803 254 METATCPRSCAGVDSNDLYMCREGDV---M---ALRCNTWQ 288 (289)
Q Consensus 254 ~~~~~~~~~~~~~~~~~ly~~GG~~~---~---~~~~~~w~ 288 (289)
+.. +...++++.+|+||++||.++ . ...+++|+
T Consensus 500 -~~~-r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 500 -ESR-LSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred -Ccc-cccceeEEECCEEEEEeeecceeehhhcCccccccc
Confidence 332 334567888999999999766 2 22348886
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1e-32 Score=246.65 Aligned_cols=187 Identities=16% Similarity=0.293 Sum_probs=155.7
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
.+++.||+.+++|..++++|.++..+ ++++++++||++||.... ...+++++||+.+++|+.++++| .++..+
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~----~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~ 383 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNP----GVTVFNNRIYVIGGIYNS--ISLNTVESWKPGESKWREEPPLI-FPRYNP 383 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccc----eEEEECCEEEEEeCCCCC--EecceEEEEcCCCCceeeCCCcC-cCCccc
Confidence 57899999999999999999888765 888999999999998743 35788999999999999999999 466666
Q ss_pred eEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEE
Q 048803 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFD 240 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd 240 (289)
++++ .+++||++||........+.+++||+.+++|+.++++|.+|.++++++.+++||++||..........+.+++||
T Consensus 384 ~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 462 (534)
T PHA03098 384 CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYN 462 (534)
T ss_pred eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEec
Confidence 6655 599999999976544456789999999999999999999999999999999999999986533212345699999
Q ss_pred CCCCceeecccccccCCCCCCceeeeeCCeEEEEeCce
Q 048803 241 AAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 241 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
+.+++|+.++.++. + +..+++++.+++||++||.+
T Consensus 463 ~~~~~W~~~~~~~~--~-r~~~~~~~~~~~iyv~GG~~ 497 (534)
T PHA03098 463 PVTNKWTELSSLNF--P-RINASLCIFNNKIYVVGGDK 497 (534)
T ss_pred CCCCceeeCCCCCc--c-cccceEEEECCEEEEEcCCc
Confidence 99999999987432 2 33345667799999999965
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.7e-32 Score=231.81 Aligned_cols=230 Identities=21% Similarity=0.334 Sum_probs=162.8
Q ss_pred hHHhhhc----ChhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCCCCC-CCCCCC
Q 048803 33 GWKSEIS----RPEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPG-FPDGLP 107 (289)
Q Consensus 33 ~W~~l~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~-~~~~~~ 107 (289)
+|..+.. .|.....+... ..+..+|++|+...... ...+++++||+.+++|..+++++. ++. ..
T Consensus 8 ~W~~~~~~~~~~P~pR~~h~~~-~~~~~iyv~GG~~~~~~---------~~~~~~~~yd~~~~~W~~~~~~~~~p~~-~~ 76 (341)
T PLN02153 8 GWIKVEQKGGKGPGPRCSHGIA-VVGDKLYSFGGELKPNE---------HIDKDLYVFDFNTHTWSIAPANGDVPRI-SC 76 (341)
T ss_pred eEEEecCCCCCCCCCCCcceEE-EECCEEEEECCccCCCC---------ceeCcEEEEECCCCEEEEcCccCCCCCC-cc
Confidence 4777765 23322222223 33455666666532111 112589999999999999987753 332 12
Q ss_pred ceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCC-----CCCCccceeEEEecCCEEEEEcCCCCCC--
Q 048803 108 LFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADM-----PGGRRMLFGCASDGDRTVYVAGGHDEDK-- 180 (289)
Q Consensus 108 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~~~~~~~~~~~~~~~iyv~GG~~~~~-- 180 (289)
.++++++++++||++||..... ..+++++||+.+++|+.++++ | .+|..+++++ .+++|||+||.....
T Consensus 77 ~~~~~~~~~~~iyv~GG~~~~~--~~~~v~~yd~~t~~W~~~~~~~~~~~p-~~R~~~~~~~-~~~~iyv~GG~~~~~~~ 152 (341)
T PLN02153 77 LGVRMVAVGTKLYIFGGRDEKR--EFSDFYSYDTVKNEWTFLTKLDEEGGP-EARTFHSMAS-DENHVYVFGGVSKGGLM 152 (341)
T ss_pred CceEEEEECCEEEEECCCCCCC--ccCcEEEEECCCCEEEEeccCCCCCCC-CCceeeEEEE-ECCEEEEECCccCCCcc
Confidence 2347889999999999986543 567899999999999999877 4 4666666665 599999999986421
Q ss_pred ---cccCceEEEEcCCCceEeCCCCC---ccccccceEEECCEEEEEeeecCC-----CCCcccceEEEEECCCCceeec
Q 048803 181 ---NALKSAMAYDVARDEWASLPDMS---RERDECKAVFHCGKLLVIGGYSTN-----AQGRFERHAEAFDAAAQQWGPV 249 (289)
Q Consensus 181 ---~~~~~~~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~~~l~~~gG~~~~-----~~~~~~~~v~~yd~~~~~W~~~ 249 (289)
..++++++||+++++|+.++++. .+|..+++++++++||++||.... ......+.+++||+.+++|+++
T Consensus 153 ~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 153 KTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV 232 (341)
T ss_pred CCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence 13467999999999999998754 678888899999999999987521 0111246799999999999999
Q ss_pred ccccccCCCCCCceeeeeCCeEEEEeCc
Q 048803 250 EEDFMETATCPRSCAGVDSNDLYMCREG 277 (289)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~ly~~GG~ 277 (289)
......+..+..+++++++++|||+||.
T Consensus 233 ~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 233 ETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred cccCCCCCCcceeeeEEECCEEEEECcc
Confidence 7532112233445667789999999996
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=242.92 Aligned_cols=187 Identities=21% Similarity=0.338 Sum_probs=154.9
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..+++|||.+++|..++++|.++..+ ++++++++||++||.+... ...+.+++||+.+++|..+++|+ .+|..+
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~----~~a~l~~~IYviGG~~~~~-~~~~~v~~Yd~~~n~W~~~~~m~-~~R~~~ 345 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINY----ASAIVDNEIIIAGGYNFNN-PSLNKVYKINIENKIHVELPPMI-KNRCRF 345 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccce----EEEEECCEEEEEcCCCCCC-CccceEEEEECCCCeEeeCCCCc-chhhce
Confidence 35789999999999999999988755 7889999999999975332 35788999999999999999999 567677
Q ss_pred eEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCC------------
Q 048803 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNA------------ 228 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~------------ 228 (289)
++++ .+++||++||.+.. ...+.+++||+.+++|+.+++||.+|..+++++++|+||++||.+...
T Consensus 346 ~~~~-~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 346 SLAV-IDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred eEEE-ECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccc
Confidence 6666 59999999998643 345789999999999999999999999999999999999999976421
Q ss_pred ---CCcccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCce
Q 048803 229 ---QGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 229 ---~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
+....+.+++|||.+++|+.++.++ .. +..+++++.+++||++||.+
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~-r~~~~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFW--TG-TIRPGVVSHKDDIYVVCDIK 473 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCC--cc-cccCcEEEECCEEEEEeCCC
Confidence 0112567999999999999998753 32 33456788899999999964
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.9e-32 Score=238.23 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=145.1
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..++.|||.+++|..+++++.++..+ ++++++++||++||.+. .+.+++||+.+++|+.+++|+. +|..+
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~----~~v~~~~~iYviGG~~~-----~~sve~ydp~~n~W~~~~~l~~-~r~~~ 356 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYA----SGVPANNKLYVVGGLPN-----PTSVERWFHGDAAWVNMPSLLK-PRCNP 356 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcc----eEEEECCEEEEECCcCC-----CCceEEEECCCCeEEECCCCCC-CCccc
Confidence 67899999999999999999988765 78889999999999752 2568999999999999999994 56566
Q ss_pred eEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEE
Q 048803 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFD 240 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd 240 (289)
++++ .+|+||++||.... .+.+++|||++++|+.+++|+.+|..+++++++|+||++||. +++||
T Consensus 357 ~~~~-~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~-----------~e~yd 421 (480)
T PHA02790 357 AVAS-INNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN-----------AEFYC 421 (480)
T ss_pred EEEE-ECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc-----------eEEec
Confidence 6665 59999999997543 257899999999999999999999999999999999999973 58899
Q ss_pred CCCCceeecccccccCCCCCCceeeeeCCeEEEEeCce
Q 048803 241 AAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 241 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
+++++|+.++.+ +. .+..+++++.+|+||++||.+
T Consensus 422 p~~~~W~~~~~m--~~-~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 422 ESSNTWTLIDDP--IY-PRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCCcEeEcCCC--CC-CccccEEEEECCEEEEECCcC
Confidence 999999999874 32 234446778899999999964
No 8
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.2e-31 Score=222.48 Aligned_cols=228 Identities=15% Similarity=0.241 Sum_probs=164.8
Q ss_pred hHHhhhcChhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCe----EeCCCCCCCCCCCCc
Q 048803 33 GWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEW----SELPPIPGFPDGLPL 108 (289)
Q Consensus 33 ~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~~~~~~~~~~ 108 (289)
+|..+.+.|........+.. +..+|++|+..... ...++++||+.+++| ..++++|.++..+
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~-~~~lyviGG~~~~~-----------~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-- 117 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV-ENGIYYIGGSNSSE-----------RFSSVYRITLDESKEELICETIGNLPFTFENG-- 117 (323)
T ss_pred eEEEcccCCccccceEEEEE-CCEEEEEcCCCCCC-----------CceeEEEEEEcCCceeeeeeEcCCCCcCccCc--
Confidence 58887776654433333333 45556665543211 126899999999987 7889999888765
Q ss_pred eeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEE
Q 048803 109 FCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMA 188 (289)
Q Consensus 109 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 188 (289)
++++++++||++||.... ...+++++||+.+++|+.+++++..+|..+.+++ .+++|||+||.+.. ...++++
T Consensus 118 --~~~~~~~~iYv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~-~~~~iYv~GG~~~~--~~~~~~~ 190 (323)
T TIGR03548 118 --SACYKDGTLYVGGGNRNG--KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVK-LQNELYVFGGGSNI--AYTDGYK 190 (323)
T ss_pred --eEEEECCEEEEEeCcCCC--ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEE-ECCEEEEEcCCCCc--cccceEE
Confidence 788899999999997533 2478899999999999999998855666665554 59999999998643 2346899
Q ss_pred EEcCCCceEeCCCCC---ccc--cccce-EEECCEEEEEeeecCCC-----------------------------CCccc
Q 048803 189 YDVARDEWASLPDMS---RER--DECKA-VFHCGKLLVIGGYSTNA-----------------------------QGRFE 233 (289)
Q Consensus 189 yd~~~~~W~~~~~~~---~~~--~~~~~-~~~~~~l~~~gG~~~~~-----------------------------~~~~~ 233 (289)
||+++++|+.+++++ .++ ..+++ ++.+++||++||.+... ...+.
T Consensus 191 yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (323)
T TIGR03548 191 YSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWN 270 (323)
T ss_pred EecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcC
Confidence 999999999998763 232 23333 34579999999986321 01123
Q ss_pred ceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCceeeccc
Q 048803 234 RHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDVMALR 283 (289)
Q Consensus 234 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~~ 283 (289)
+.+++||+.+++|+.++.+ +...+..++++..+++||++||.......
T Consensus 271 ~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~iyv~GG~~~pg~r 318 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNIFSINGELKPGVR 318 (323)
T ss_pred ceEEEEECCCCeeeEcccc--cccccCchheEEECCEEEEEeccccCCcC
Confidence 6799999999999999863 32234455678889999999998665443
No 9
>PLN02193 nitrile-specifier protein
Probab=99.98 E-value=1.6e-30 Score=227.41 Aligned_cols=227 Identities=17% Similarity=0.264 Sum_probs=165.2
Q ss_pred hhHHhhhcC---hhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCCCC-CCCCCCC
Q 048803 32 KGWKSEISR---PEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIP-GFPDGLP 107 (289)
Q Consensus 32 k~W~~l~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~-~~~~~~~ 107 (289)
.+|..+... |..+..+... ..+..+|++|+....... ...++++||+.+++|..+++.. .|+. .+
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~-~~~~~iyv~GG~~~~~~~---------~~~~v~~yD~~~~~W~~~~~~g~~P~~-~~ 219 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIA-QVGNKIYSFGGEFTPNQP---------IDKHLYVFDLETRTWSISPATGDVPHL-SC 219 (470)
T ss_pred ceEEEcccCCCCCCCccccEEE-EECCEEEEECCcCCCCCC---------eeCcEEEEECCCCEEEeCCCCCCCCCC-cc
Confidence 578877653 3222222333 345566777665322111 1157999999999999887542 2221 11
Q ss_pred ceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCC---CCCCccceeEEEecCCEEEEEcCCCCCCcccC
Q 048803 108 LFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADM---PGGRRMLFGCASDGDRTVYVAGGHDEDKNALK 184 (289)
Q Consensus 108 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 184 (289)
..+++++++++||++||..... ..+++++||+.+++|++++++ | .+|..+++++ .+++||++||.... ...+
T Consensus 220 ~~~~~v~~~~~lYvfGG~~~~~--~~ndv~~yD~~t~~W~~l~~~~~~P-~~R~~h~~~~-~~~~iYv~GG~~~~-~~~~ 294 (470)
T PLN02193 220 LGVRMVSIGSTLYVFGGRDASR--QYNGFYSFDTTTNEWKLLTPVEEGP-TPRSFHSMAA-DEENVYVFGGVSAT-ARLK 294 (470)
T ss_pred cceEEEEECCEEEEECCCCCCC--CCccEEEEECCCCEEEEcCcCCCCC-CCccceEEEE-ECCEEEEECCCCCC-CCcc
Confidence 2347888999999999986543 578999999999999999887 4 4666676665 59999999998653 3467
Q ss_pred ceEEEEcCCCceEeCCC---CCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCC
Q 048803 185 SAMAYDVARDEWASLPD---MSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPR 261 (289)
Q Consensus 185 ~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 261 (289)
++++||+.+++|+.+++ ++.+|..+++++++++||++||.++. ..+++++||+++++|+.+..+...+..+..
T Consensus 295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~----~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~ 370 (470)
T PLN02193 295 TLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC----EVDDVHYYDPVQDKWTQVETFGVRPSERSV 370 (470)
T ss_pred eEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC----ccCceEEEECCCCEEEEeccCCCCCCCcce
Confidence 89999999999999875 56788889999999999999997542 347899999999999999764222223444
Q ss_pred ceeeeeCCeEEEEeCce
Q 048803 262 SCAGVDSNDLYMCREGD 278 (289)
Q Consensus 262 ~~~~~~~~~ly~~GG~~ 278 (289)
++++.++++|||+||.+
T Consensus 371 ~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 371 FASAAVGKHIVIFGGEI 387 (470)
T ss_pred eEEEEECCEEEEECCcc
Confidence 56777899999999964
No 10
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=5e-31 Score=222.78 Aligned_cols=243 Identities=16% Similarity=0.187 Sum_probs=167.9
Q ss_pred hhHHHHHHHhhhHHhhhcChhHHHH---hhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCC
Q 048803 22 KQFATISSVCKGWKSEISRPEFRRN---RKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPP 98 (289)
Q Consensus 22 ~~l~~~~~v~k~W~~l~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 98 (289)
+++.++....++|..+...+..... ...+...+..+|++|+..... ...++++||+.+++|+.+++
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-----------~~~~v~~yd~~t~~W~~~~~ 118 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR-----------EFSDFYSYDTVKNEWTFLTK 118 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC-----------ccCcEEEEECCCCEEEEecc
Confidence 3455566667889987654321111 112223345666666653221 12578999999999999987
Q ss_pred C-----CCCCCCCCceeEEEEeCCEEEEEeCcCCCC----cccccceEEEEccCCeEEeCCCCC--CCCccceeEEEecC
Q 048803 99 I-----PGFPDGLPLFCQLSAVGPELVVIGGLDLTT----WEASSSVFVFNIISATWRRGADMP--GGRRMLFGCASDGD 167 (289)
Q Consensus 99 ~-----~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~----~~~~~~~~~yd~~t~~W~~~~~~~--~~~~~~~~~~~~~~ 167 (289)
+ |.+|..+ ++++.+++|||+||....+ ....+++++||+.+++|+.++++. ..+|..+++++ .+
T Consensus 119 ~~~~~~p~~R~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~ 193 (341)
T PLN02153 119 LDEEGGPEARTFH----SMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQ 193 (341)
T ss_pred CCCCCCCCCceee----EEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-EC
Confidence 7 5555544 7888999999999985332 113568999999999999998764 24566666665 59
Q ss_pred CEEEEEcCCCCC-------CcccCceEEEEcCCCceEeCCC---CCccccccceEEECCEEEEEeeecCC------CCCc
Q 048803 168 RTVYVAGGHDED-------KNALKSAMAYDVARDEWASLPD---MSRERDECKAVFHCGKLLVIGGYSTN------AQGR 231 (289)
Q Consensus 168 ~~iyv~GG~~~~-------~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~l~~~gG~~~~------~~~~ 231 (289)
++||++||.... ....+++++||+++++|+++++ +|.+|..+++++++++||++||.... ..+.
T Consensus 194 ~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 273 (341)
T PLN02153 194 GKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGT 273 (341)
T ss_pred CeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccccccc
Confidence 999999986421 1124679999999999999874 67889899999999999999997421 1123
Q ss_pred ccceEEEEECCCCceeeccccc---ccCCCCCCceeeee-CCeEEEEeCceee
Q 048803 232 FERHAEAFDAAAQQWGPVEEDF---METATCPRSCAGVD-SNDLYMCREGDVM 280 (289)
Q Consensus 232 ~~~~v~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~~~-~~~ly~~GG~~~~ 280 (289)
..+++++||+.+++|+.+.... +|..+....++++. +++||++||.+..
T Consensus 274 ~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 274 LSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred ccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC
Confidence 4568999999999999987432 22222222233333 4589999998654
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1.7e-29 Score=214.22 Aligned_cols=191 Identities=17% Similarity=0.271 Sum_probs=139.0
Q ss_pred eeEEEEEC--CCCCeEeCCCCCC-CCCCCCceeEEEEeCCEEEEEeCcCCCC----cccccceEEEEccCCeEEeCCC-C
Q 048803 81 YRITVLEL--GSGEWSELPPIPG-FPDGLPLFCQLSAVGPELVVIGGLDLTT----WEASSSVFVFNIISATWRRGAD-M 152 (289)
Q Consensus 81 ~~~~~~d~--~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~lyv~GG~~~~~----~~~~~~~~~yd~~t~~W~~~~~-~ 152 (289)
..+++||+ .+++|..++++|. ++..+ ++++++++|||+||..... ....+++++||+.+++|+.++. +
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~----~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~ 104 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQA----VAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS 104 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccc----eEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCC
Confidence 46788886 5788999999984 66654 7889999999999985321 1246789999999999999974 3
Q ss_pred CCCCccceeEEEecCCEEEEEcCCCCCC---------------------------------cccCceEEEEcCCCceEeC
Q 048803 153 PGGRRMLFGCASDGDRTVYVAGGHDEDK---------------------------------NALKSAMAYDVARDEWASL 199 (289)
Q Consensus 153 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~---------------------------------~~~~~~~~yd~~~~~W~~~ 199 (289)
+ ..+..++++++.+++||++||..... ...+.+++||+.+++|+.+
T Consensus 105 p-~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~ 183 (346)
T TIGR03547 105 P-VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL 183 (346)
T ss_pred C-CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC
Confidence 3 23333333323699999999975320 0136799999999999999
Q ss_pred CCCCc-cccccceEEECCEEEEEeeecCCCCCcccceEEEEE--CCCCceeecccccccCCC--C--CCceeeeeCCeEE
Q 048803 200 PDMSR-ERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFD--AAAQQWGPVEEDFMETAT--C--PRSCAGVDSNDLY 272 (289)
Q Consensus 200 ~~~~~-~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~~--~--~~~~~~~~~~~ly 272 (289)
+++|. +|..+++++++++||++||..... .....++.|| +++++|+.++.++.+... . ..+++++.+++||
T Consensus 184 ~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iy 261 (346)
T TIGR03547 184 GENPFLGTAGSAIVHKGNKLLLINGEIKPG--LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLL 261 (346)
T ss_pred ccCCCCcCCCceEEEECCEEEEEeeeeCCC--ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEE
Confidence 99986 678888889999999999986422 1123455565 577899999886433211 1 1223567899999
Q ss_pred EEeCce
Q 048803 273 MCREGD 278 (289)
Q Consensus 273 ~~GG~~ 278 (289)
++||.+
T Consensus 262 v~GG~~ 267 (346)
T TIGR03547 262 VAGGAN 267 (346)
T ss_pred EeecCC
Confidence 999964
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=2.6e-29 Score=210.93 Aligned_cols=185 Identities=18% Similarity=0.203 Sum_probs=143.0
Q ss_pred eeEEEEE-CCC-CCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeE----EeCCCCCC
Q 048803 81 YRITVLE-LGS-GEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATW----RRGADMPG 154 (289)
Q Consensus 81 ~~~~~~d-~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W----~~~~~~~~ 154 (289)
.++++++ +.. .+|..++++|.++..+ ++++++++||++||.+... ..+++++||+.+++| +.++++|.
T Consensus 39 ~~v~~~~~~~~~~~W~~~~~lp~~r~~~----~~~~~~~~lyviGG~~~~~--~~~~v~~~d~~~~~w~~~~~~~~~lp~ 112 (323)
T TIGR03548 39 KGIYIAKDENSNLKWVKDGQLPYEAAYG----ASVSVENGIYYIGGSNSSE--RFSSVYRITLDESKEELICETIGNLPF 112 (323)
T ss_pred eeeEEEecCCCceeEEEcccCCccccce----EEEEECCEEEEEcCCCCCC--CceeEEEEEEcCCceeeeeeEcCCCCc
Confidence 4677775 332 3799999999988765 6788899999999986543 578899999999987 78899984
Q ss_pred CCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCC-ccccccceEEECCEEEEEeeecCCCCCccc
Q 048803 155 GRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMS-RERDECKAVFHCGKLLVIGGYSTNAQGRFE 233 (289)
Q Consensus 155 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~ 233 (289)
++..+++++ .+++||++||..+. ...+++++||+++++|+.++++| .+|..+.+++++++||++||.+.. ..
T Consensus 113 -~~~~~~~~~-~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~----~~ 185 (323)
T TIGR03548 113 -TFENGSACY-KDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI----AY 185 (323)
T ss_pred -CccCceEEE-ECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc----cc
Confidence 455555555 59999999997543 34678999999999999999887 478888888999999999998643 23
Q ss_pred ceEEEEECCCCceeeccccc---ccCCCCCCceeeeeCCeEEEEeCce
Q 048803 234 RHAEAFDAAAQQWGPVEEDF---METATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 234 ~~v~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
.++++||+++++|+.++.+. .|.......+++..+++||++||.+
T Consensus 186 ~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 186 TDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred cceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 46899999999999998752 1222222233455689999999975
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1e-29 Score=215.46 Aligned_cols=238 Identities=15% Similarity=0.160 Sum_probs=158.5
Q ss_pred HhhhHHhhhcChhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCC-CCCCCCCCCc
Q 048803 30 VCKGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPP-IPGFPDGLPL 108 (289)
Q Consensus 30 v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~~~~~~~~~~ 108 (289)
..++|..+...|...+........+..+|+.|+....... .......++++|||.+++|+.++. +|.++..+
T Consensus 39 ~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~-----~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~-- 111 (346)
T TIGR03547 39 PSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSE-----GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGA-- 111 (346)
T ss_pred CCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCC-----CcceecccEEEEECCCCEEecCCCCCCCcccce--
Confidence 3467999887763222222233344556666654321100 000123689999999999999973 34433322
Q ss_pred eeEEE-EeCCEEEEEeCcCCCCc--------------------------------ccccceEEEEccCCeEEeCCCCCCC
Q 048803 109 FCQLS-AVGPELVVIGGLDLTTW--------------------------------EASSSVFVFNIISATWRRGADMPGG 155 (289)
Q Consensus 109 ~~~~~-~~~~~lyv~GG~~~~~~--------------------------------~~~~~~~~yd~~t~~W~~~~~~~~~ 155 (289)
+++ +++++||++||.+.... ...+.+++||+.+++|+.+++|+..
T Consensus 112 --~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~ 189 (346)
T TIGR03547 112 --SGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL 189 (346)
T ss_pred --eEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCC
Confidence 444 68999999999753200 0137899999999999999999854
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCcccCceEEEE--cCCCceEeCCCCCcccc-------ccceEEECCEEEEEeeecC
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYD--VARDEWASLPDMSRERD-------ECKAVFHCGKLLVIGGYST 226 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd--~~~~~W~~~~~~~~~~~-------~~~~~~~~~~l~~~gG~~~ 226 (289)
++..+++++ .+++|||+||..........++.|| +++++|+.+++||.+|. .+.+++++++||++||...
T Consensus 190 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~ 268 (346)
T TIGR03547 190 GTAGSAIVH-KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANF 268 (346)
T ss_pred cCCCceEEE-ECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCC
Confidence 666666555 5999999999764322233455565 56789999999987652 3446788999999999753
Q ss_pred CCC-------------C-cccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCceee
Q 048803 227 NAQ-------------G-RFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDVM 280 (289)
Q Consensus 227 ~~~-------------~-~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~ 280 (289)
... + .....+++||+++++|+.+..+ |..+ ...++++.+++|||+||.+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l--p~~~-~~~~~~~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 269 PGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL--PQGL-AYGVSVSWNNGVLLIGGENSG 333 (346)
T ss_pred CCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC--CCCc-eeeEEEEcCCEEEEEeccCCC
Confidence 210 0 0123689999999999999875 3333 233566789999999997653
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=1.5e-28 Score=209.87 Aligned_cols=227 Identities=15% Similarity=0.214 Sum_probs=153.4
Q ss_pred hhHHhhhcChhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECC--CCCeEeCCCCCC-CCCCCCc
Q 048803 32 KGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELG--SGEWSELPPIPG-FPDGLPL 108 (289)
Q Consensus 32 k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~-~~~~~~~ 108 (289)
..+..+...|.......... .+..+|++|+... ..++.||+. +++|..++++|. ++..+
T Consensus 17 ~~~~~l~~lP~~~~~~~~~~-~~~~iyv~gG~~~---------------~~~~~~d~~~~~~~W~~l~~~p~~~r~~~-- 78 (376)
T PRK14131 17 ANAEQLPDLPVPFKNGTGAI-DNNTVYVGLGSAG---------------TSWYKLDLNAPSKGWTKIAAFPGGPREQA-- 78 (376)
T ss_pred eecccCCCCCcCccCCeEEE-ECCEEEEEeCCCC---------------CeEEEEECCCCCCCeEECCcCCCCCcccc--
Confidence 44555666665444333333 4555556554411 357788886 478999999875 55443
Q ss_pred eeEEEEeCCEEEEEeCcCCC-C---cccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCC----
Q 048803 109 FCQLSAVGPELVVIGGLDLT-T---WEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDK---- 180 (289)
Q Consensus 109 ~~~~~~~~~~lyv~GG~~~~-~---~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~---- 180 (289)
++++++++|||+||.... . ....+++++||+.+++|+.++++....+..++++++.+++||++||.....
T Consensus 79 --~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 79 --VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred --eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 788999999999998641 1 124688999999999999998642123333444443599999999975310
Q ss_pred -----------------------------cccCceEEEEcCCCceEeCCCCCc-cccccceEEECCEEEEEeeecCCCCC
Q 048803 181 -----------------------------NALKSAMAYDVARDEWASLPDMSR-ERDECKAVFHCGKLLVIGGYSTNAQG 230 (289)
Q Consensus 181 -----------------------------~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~l~~~gG~~~~~~~ 230 (289)
...+.+++||+.+++|+.++++|. ++..++++.++++||++||.......
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~ 236 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLR 236 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcC
Confidence 013579999999999999999986 67788888899999999997543211
Q ss_pred cccceEEEEECCCCceeecccccccCCCC-----CCceeeeeCCeEEEEeCce
Q 048803 231 RFERHAEAFDAAAQQWGPVEEDFMETATC-----PRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 231 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~~ly~~GG~~ 278 (289)
........||+++++|+.+..++.+.... ....+++.+++||++||.+
T Consensus 237 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 237 TDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred ChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccC
Confidence 11112345678899999999754322111 1122456799999999964
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=5e-29 Score=190.97 Aligned_cols=208 Identities=19% Similarity=0.351 Sum_probs=162.1
Q ss_pred CeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCC---CCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcc
Q 048803 55 QLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELP---PIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWE 131 (289)
Q Consensus 55 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~ 131 (289)
.-+|+-|++++.+..+ +.++.|||++++|.... .+|..|.++ ++++.++.+|++||+.+...+
T Consensus 89 d~~yvWGGRND~egaC----------N~Ly~fDp~t~~W~~p~v~G~vPgaRDGH----sAcV~gn~MyiFGGye~~a~~ 154 (392)
T KOG4693|consen 89 DKAYVWGGRNDDEGAC----------NLLYEFDPETNVWKKPEVEGFVPGARDGH----SACVWGNQMYIFGGYEEDAQR 154 (392)
T ss_pred ceEEEEcCccCccccc----------ceeeeeccccccccccceeeecCCccCCc----eeeEECcEEEEecChHHHHHh
Confidence 3445555666655554 68899999999998543 367777776 899999999999999776656
Q ss_pred cccceEEEEccCCeEEeCCCCCCCC--ccceeEEEecCCEEEEEcCCCCCCcc--------cCceEEEEcCCCceEeCCC
Q 048803 132 ASSSVFVFNIISATWRRGADMPGGR--RMLFGCASDGDRTVYVAGGHDEDKNA--------LKSAMAYDVARDEWASLPD 201 (289)
Q Consensus 132 ~~~~~~~yd~~t~~W~~~~~~~~~~--~~~~~~~~~~~~~iyv~GG~~~~~~~--------~~~~~~yd~~~~~W~~~~~ 201 (289)
.+++++++|..|.+|+.+.....++ |.+|++++ +++.+|++||..+.... -+.+..+|++|+.|...++
T Consensus 155 FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~-~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 155 FSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASV-IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred hhccceeEeccceeeeehhccCCCchhhhhhhhhh-ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 7899999999999999986544333 44555555 59999999998765332 3467889999999987754
Q ss_pred ---CCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCce
Q 048803 202 ---MSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 202 ---~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
.|.+|.+|++.+.++++|++||+++.-+ .-++++++|||.+..|+.+..-.--+..+.+.|.++.++++|++||..
T Consensus 234 ~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln-~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 234 NTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN-VHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred CCcCCCcccccceEEEcceEEEecccchhhh-hhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 5678999999999999999999987532 345789999999999999875443444455567888899999999964
No 16
>PLN02193 nitrile-specifier protein
Probab=99.96 E-value=2.1e-27 Score=207.96 Aligned_cols=188 Identities=17% Similarity=0.271 Sum_probs=144.0
Q ss_pred eEEEEECCC----CCeEeCCC---CCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCC--
Q 048803 82 RITVLELGS----GEWSELPP---IPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADM-- 152 (289)
Q Consensus 82 ~~~~~d~~~----~~W~~~~~---~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~-- 152 (289)
.++.++|.+ ++|..+++ +|.+|..+ ++++++++||++||.........+++++||+.+++|+.++.+
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h----~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~ 213 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSH----GIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGD 213 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCcccc----EEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCC
Confidence 455557755 79998876 46677765 888999999999997543212446899999999999987654
Q ss_pred -CCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCC---CccccccceEEECCEEEEEeeecCCC
Q 048803 153 -PGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDM---SRERDECKAVFHCGKLLVIGGYSTNA 228 (289)
Q Consensus 153 -~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~l~~~gG~~~~~ 228 (289)
|..++..+++++ .+++||++||.... ...+++++||+.+++|+.++++ |.+|..|++++.+++||++||.+...
T Consensus 214 ~P~~~~~~~~~v~-~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~ 291 (470)
T PLN02193 214 VPHLSCLGVRMVS-IGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA 291 (470)
T ss_pred CCCCcccceEEEE-ECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC
Confidence 211233444444 59999999998653 3567899999999999999887 78999999999999999999986532
Q ss_pred CCcccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCce
Q 048803 229 QGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 229 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
..+.+++||+.+++|++++.....+..+..+++++++++||++||.+
T Consensus 292 ---~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 292 ---RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN 338 (470)
T ss_pred ---CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC
Confidence 45689999999999999875322223344456777899999999954
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=2.8e-28 Score=208.29 Aligned_cols=234 Identities=15% Similarity=0.196 Sum_probs=156.3
Q ss_pred hhhHHhhhcChhHHHHhhhcCCCCCeEEEEeeeec-cccCCCCCCCCCCCceeEEEEECCCCCeEeCCCC-CCCCCCCCc
Q 048803 31 CKGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVD-QSRKSGVPKRFATPVYRITVLELGSGEWSELPPI-PGFPDGLPL 108 (289)
Q Consensus 31 ~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-~~~~~~~~~ 108 (289)
.++|..+...|...+........+..+|++|+... .... ......++++||+.+++|+.++++ |.++..
T Consensus 61 ~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~------~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~--- 131 (376)
T PRK14131 61 SKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEG------SPQVFDDVYKYDPKTNSWQKLDTRSPVGLAG--- 131 (376)
T ss_pred CCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCC------ceeEcccEEEEeCCCCEEEeCCCCCCCcccc---
Confidence 46798887665322323333334556666666532 1100 001236899999999999999853 333332
Q ss_pred eeEEEE-eCCEEEEEeCcCCCC--------------------------------cccccceEEEEccCCeEEeCCCCCCC
Q 048803 109 FCQLSA-VGPELVVIGGLDLTT--------------------------------WEASSSVFVFNIISATWRRGADMPGG 155 (289)
Q Consensus 109 ~~~~~~-~~~~lyv~GG~~~~~--------------------------------~~~~~~~~~yd~~t~~W~~~~~~~~~ 155 (289)
+++++ .+++||++||..... +...+++++||+.+++|+.++++|..
T Consensus 132 -~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~ 210 (376)
T PRK14131 132 -HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL 210 (376)
T ss_pred -eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC
Confidence 24444 799999999975310 01247899999999999999999854
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCcccCce--EEEEcCCCceEeCCCCCccccc--------cceEEECCEEEEEeeec
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSA--MAYDVARDEWASLPDMSRERDE--------CKAVFHCGKLLVIGGYS 225 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~--~~yd~~~~~W~~~~~~~~~~~~--------~~~~~~~~~l~~~gG~~ 225 (289)
++..+++++ .+++||++||..........+ ..||+++++|..++++|.+|.+ +.+++++++||++||..
T Consensus 211 ~~~~~a~v~-~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 211 GTAGSAVVI-KGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred CCCcceEEE-ECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccC
Confidence 666665555 599999999975432222333 3567789999999999876632 22467899999999976
Q ss_pred CCCC------Cc--------ccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCce
Q 048803 226 TNAQ------GR--------FERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 226 ~~~~------~~--------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
.... +. ....+++||+++++|+.+..+ |..+.. ++++.++++||++||..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l--p~~r~~-~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 290 FPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL--PQGLAY-GVSVSWNNGVLLIGGET 353 (376)
T ss_pred CCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC--CCCccc-eEEEEeCCEEEEEcCCC
Confidence 4210 00 012478999999999999874 333333 35667899999999964
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=215.24 Aligned_cols=183 Identities=16% Similarity=0.253 Sum_probs=145.8
Q ss_pred hhhHHhhhcChhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCCCCCCCCCCCcee
Q 048803 31 CKGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFC 110 (289)
Q Consensus 31 ~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 110 (289)
.++|..+.+.+....... ....+..+|+.||.... ..++.|||.+++|..++++|.++..+
T Consensus 296 ~~~W~~~~~m~~~r~~~~-~v~~~~~iYviGG~~~~--------------~sve~ydp~~n~W~~~~~l~~~r~~~---- 356 (480)
T PHA02790 296 SNNWIPIPPMNSPRLYAS-GVPANNKLYVVGGLPNP--------------TSVERWFHGDAAWVNMPSLLKPRCNP---- 356 (480)
T ss_pred CCEEEECCCCCchhhcce-EEEECCEEEEECCcCCC--------------CceEEEECCCCeEEECCCCCCCCccc----
Confidence 456888777665333222 22345566666654211 45789999999999999999988866
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEE
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYD 190 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 190 (289)
++++++++||++||.... .+.+++|||.+++|+.+++|+. ++..+++++ ++++||++||. ++.||
T Consensus 357 ~~~~~~g~IYviGG~~~~----~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~-~~~~IYv~GG~---------~e~yd 421 (480)
T PHA02790 357 AVASINNVIYVIGGHSET----DTTTEYLLPNHDQWQFGPSTYY-PHYKSCALV-FGRRLFLVGRN---------AEFYC 421 (480)
T ss_pred EEEEECCEEEEecCcCCC----CccEEEEeCCCCEEEeCCCCCC-ccccceEEE-ECCEEEEECCc---------eEEec
Confidence 889999999999997532 3678999999999999999994 555555555 59999999983 68899
Q ss_pred cCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecc
Q 048803 191 VARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVE 250 (289)
Q Consensus 191 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 250 (289)
+++++|+.+++|+.+|..+++++++|+||++||.+.. ...+.+++||+.+++|+...
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~---~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRG---SYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCC---cccceEEEEECCCCeEEecC
Confidence 9999999999999999999999999999999998642 23468999999999998653
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=2.9e-28 Score=218.06 Aligned_cols=208 Identities=18% Similarity=0.297 Sum_probs=159.8
Q ss_pred hHHHHHHHhhhHHhhhcChhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCCCCCC
Q 048803 23 QFATISSVCKGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGF 102 (289)
Q Consensus 23 ~l~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~ 102 (289)
++..+....++|..+...+.......... .+..+|+.||.... ....++++||+.+++|+.++++|.+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~lp~~ 379 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV-FNNRIYVIGGIYNS-----------ISLNTVESWKPGESKWREEPPLIFP 379 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE-ECCEEEEEeCCCCC-----------EecceEEEEcCCCCceeeCCCcCcC
Confidence 34445556778988776664333333333 34455555554311 1125789999999999999999999
Q ss_pred CCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCc-
Q 048803 103 PDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKN- 181 (289)
Q Consensus 103 ~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~- 181 (289)
+..+ ++++++++||++||..... ...+.+++||+.+++|+.++++| .++..+++++ .+++||++||......
T Consensus 380 r~~~----~~~~~~~~iYv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 380 RYNP----CVVNVNNLIYVIGGISKND-ELLKTVECFSLNTNKWSKGSPLP-ISHYGGCAIY-HDGKIYVIGGISYIDNI 452 (534)
T ss_pred Cccc----eEEEECCEEEEECCcCCCC-cccceEEEEeCCCCeeeecCCCC-ccccCceEEE-ECCEEEEECCccCCCCC
Confidence 8776 7888999999999975443 34788999999999999999998 4555555554 5999999999764322
Q ss_pred -ccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccc
Q 048803 182 -ALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEED 252 (289)
Q Consensus 182 -~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 252 (289)
..+.+++||+++++|+.+++++.+|..+++++++++||++||..... ..+.+++||+.+++|..++.+
T Consensus 453 ~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEY---YINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred cccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCc---ccceeEEEeCCCCEEEecCCC
Confidence 24669999999999999999999999999999999999999987532 356899999999999999874
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=171.54 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=163.7
Q ss_pred CCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCCC------CCCC---CCCCceeEEEEeCCEEEEEe
Q 048803 53 SEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPI------PGFP---DGLPLFCQLSAVGPELVVIG 123 (289)
Q Consensus 53 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~------~~~~---~~~~~~~~~~~~~~~lyv~G 123 (289)
.+..+|.+|+....+. .......++.++|..+-.|..+|+- +.+. ...+.+++++.+.+++|+.|
T Consensus 22 VG~riYSFGGYCsGed------y~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 22 VGSRIYSFGGYCSGED------YDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred ecceEEecCCcccccc------cccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence 4556677766644321 1122336899999999999999871 1111 11122458999999999999
Q ss_pred CcCCCCcccccceEEEEccCCeEEeC---CCCCCCCccceeEEEecCCEEEEEcCCCCCC-cccCceEEEEcCCCceEeC
Q 048803 124 GLDLTTWEASSSVFVFNIISATWRRG---ADMPGGRRMLFGCASDGDRTVYVAGGHDEDK-NALKSAMAYDVARDEWASL 199 (289)
Q Consensus 124 G~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~yd~~~~~W~~~ 199 (289)
|.+... ...+.++.|||.|++|.+. .-.| ..|..|++++ .++.+|++||+.++. ...++++++|..|.+|+.+
T Consensus 96 GRND~e-gaCN~Ly~fDp~t~~W~~p~v~G~vP-gaRDGHsAcV-~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~ 172 (392)
T KOG4693|consen 96 GRNDDE-GACNLLYEFDPETNVWKKPEVEGFVP-GARDGHSACV-WGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREM 172 (392)
T ss_pred CccCcc-cccceeeeeccccccccccceeeecC-CccCCceeeE-ECcEEEEecChHHHHHhhhccceeEeccceeeeeh
Confidence 986543 3678899999999999754 3345 5677787777 489999999997543 3467899999999999988
Q ss_pred C---CCCccccccceEEECCEEEEEeeecCCCCC------cccceEEEEECCCCceeecccccccCCCCCCceeeeeCCe
Q 048803 200 P---DMSRERDECKAVFHCGKLLVIGGYSTNAQG------RFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSND 270 (289)
Q Consensus 200 ~---~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 270 (289)
. .+|+-|..|+++++++.+|++||+....+. .+.+.|..+|..|+.|..-+...+.+..+.++.+.+.|++
T Consensus 173 ~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~ 252 (392)
T KOG4693|consen 173 HTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGK 252 (392)
T ss_pred hccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcce
Confidence 5 567778899999999999999998754321 3667899999999999987665555555555678889999
Q ss_pred EEEEeCcee
Q 048803 271 LYMCREGDV 279 (289)
Q Consensus 271 ly~~GG~~~ 279 (289)
+|++||+++
T Consensus 253 ~Y~FGGYng 261 (392)
T KOG4693|consen 253 MYMFGGYNG 261 (392)
T ss_pred EEEecccch
Confidence 999999765
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=183.24 Aligned_cols=189 Identities=22% Similarity=0.315 Sum_probs=153.1
Q ss_pred eEEEEECCCCCeEeCCC---CCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCC---CCCC
Q 048803 82 RITVLELGSGEWSELPP---IPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGAD---MPGG 155 (289)
Q Consensus 82 ~~~~~d~~~~~W~~~~~---~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~ 155 (289)
+++++|..+..|..... .|.++.. +.+++++++||++||.+... ...++++.||+.|++|+.+.. .| +
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g----~~~~~~~~~l~lfGG~~~~~-~~~~~l~~~d~~t~~W~~l~~~~~~P-~ 162 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYG----HSLSAVGDKLYLFGGTDKKY-RNLNELHSLDLSTRTWSLLSPTGDPP-P 162 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccc----eeEEEECCeEEEEccccCCC-CChhheEeccCCCCcEEEecCcCCCC-C
Confidence 69999999999976653 3444444 48899999999999987532 458899999999999987743 34 5
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCC---CCCccccccceEEECCEEEEEeeecCCCCCcc
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLP---DMSRERDECKAVFHCGKLLVIGGYSTNAQGRF 232 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~ 232 (289)
+|..|+++++ +.++||+||.+......+++++||+++.+|.++. +.|.||.+|++++.+++++++||... ...+
T Consensus 163 ~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~--~~~~ 239 (482)
T KOG0379|consen 163 PRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD--GDVY 239 (482)
T ss_pred CcccceEEEE-CCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc--CCce
Confidence 6777877775 8999999999876657899999999999999884 56789999999999999999999872 2457
Q ss_pred cceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCcee
Q 048803 233 ERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDV 279 (289)
Q Consensus 233 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~ 279 (289)
+++++.+|..+.+|+.+....-.+..+..+.++..++.++++||...
T Consensus 240 l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 240 LNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTD 286 (482)
T ss_pred ecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcc
Confidence 89999999999999977654433444555556678999999999766
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.88 E-value=2.7e-21 Score=169.18 Aligned_cols=181 Identities=20% Similarity=0.293 Sum_probs=142.7
Q ss_pred CCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCC---CCCCCCccceeEEEecCCEEEEEcC
Q 048803 99 IPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGA---DMPGGRRMLFGCASDGDRTVYVAGG 175 (289)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~~~~iyv~GG 175 (289)
.|.+|..+ +++.+++++||+||..........+++++|..+..|.... ..| .++..+.++++ +++||++||
T Consensus 57 ~p~~R~~h----s~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~-~~~l~lfGG 130 (482)
T KOG0379|consen 57 GPIPRAGH----SAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAV-GDKLYLFGG 130 (482)
T ss_pred Ccchhhcc----ceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC-CcccceeEEEE-CCeEEEEcc
Confidence 45566655 7888899999999986554222225999999999997653 334 46667777764 899999999
Q ss_pred CCCCCcccCceEEEEcCCCceEeCC---CCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccc
Q 048803 176 HDEDKNALKSAMAYDVARDEWASLP---DMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEED 252 (289)
Q Consensus 176 ~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 252 (289)
........++++.||+.|++|..+. .+|.+|.+|++++.+++||++||.+...+ ..+++++||+++.+|+++...
T Consensus 131 ~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~--~~ndl~i~d~~~~~W~~~~~~ 208 (482)
T KOG0379|consen 131 TDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD--SLNDLHIYDLETSTWSELDTQ 208 (482)
T ss_pred ccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc--ceeeeeeeccccccceecccC
Confidence 9864455789999999999999764 46889999999999999999999987643 678999999999999999877
Q ss_pred cccCCCCCCceeeeeCCeEEEEeCce-eecccCCcc
Q 048803 253 FMETATCPRSCAGVDSNDLYMCREGD-VMALRCNTW 287 (289)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~ly~~GG~~-~~~~~~~~w 287 (289)
...+..+..+++++.+++++++||.+ ...+..|.|
T Consensus 209 g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~ 244 (482)
T KOG0379|consen 209 GEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVH 244 (482)
T ss_pred CCCCCCCCCceEEEECCeEEEEeccccCCceecceE
Confidence 66666667778888899999999988 333333443
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=6.6e-22 Score=164.48 Aligned_cols=225 Identities=16% Similarity=0.237 Sum_probs=162.3
Q ss_pred hHHhhhcC----hhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCC---CCCCCCCC
Q 048803 33 GWKSEISR----PEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELP---PIPGFPDG 105 (289)
Q Consensus 33 ~W~~l~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~~~~ 105 (289)
+|+...++ |...+-+++++..|-+++++|++... ..++++||..+++|..-. ++|.+...
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGi-------------iDELHvYNTatnqWf~PavrGDiPpgcAA 84 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGI-------------IDELHVYNTATNQWFAPAVRGDIPPGCAA 84 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccc-------------hhhhhhhccccceeecchhcCCCCCchhh
Confidence 68877654 34456677777666666666554211 168899999999997432 45555554
Q ss_pred CCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCC------CCCCccceeEEEecCCEEEEEcCCCCC
Q 048803 106 LPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADM------PGGRRMLFGCASDGDRTVYVAGGHDED 179 (289)
Q Consensus 106 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~------~~~~~~~~~~~~~~~~~iyv~GG~~~~ 179 (289)
+ ..+..+.+||+|||..+.+ +.+++++-.....-.|+++.+. +..+|..|+.+++ +++.|+|||..++
T Consensus 85 ~----GfvcdGtrilvFGGMvEYG-kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~-gnKcYlFGGLaNd 158 (830)
T KOG4152|consen 85 F----GFVCDGTRILVFGGMVEYG-KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLV-GNKCYLFGGLAND 158 (830)
T ss_pred c----ceEecCceEEEEccEeeec-cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEe-ccEeEEecccccc
Confidence 4 7788899999999987776 4667665554444557776432 2257888888885 8999999998654
Q ss_pred Cc--------ccCceEEEEcCCC----ceEeC---CCCCccccccceEEE------CCEEEEEeeecCCCCCcccceEEE
Q 048803 180 KN--------ALKSAMAYDVARD----EWASL---PDMSRERDECKAVFH------CGKLLVIGGYSTNAQGRFERHAEA 238 (289)
Q Consensus 180 ~~--------~~~~~~~yd~~~~----~W~~~---~~~~~~~~~~~~~~~------~~~l~~~gG~~~~~~~~~~~~v~~ 238 (289)
.+ .++++++.++..+ .|+.. ..+|.+|.+|+++++ ..|+|++||..+. .++++|.
T Consensus 159 seDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~----RLgDLW~ 234 (830)
T KOG4152|consen 159 SEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC----RLGDLWT 234 (830)
T ss_pred ccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc----cccceeE
Confidence 32 3678888888754 59855 468899999999987 3479999999764 4678999
Q ss_pred EECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCceee
Q 048803 239 FDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDVM 280 (289)
Q Consensus 239 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~ 280 (289)
+|+++..|.+.......+..+.-+.+..+++++|++||+--.
T Consensus 235 Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl 276 (830)
T KOG4152|consen 235 LDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPL 276 (830)
T ss_pred EecceeecccccccCCCCCCcccccceeecceeEEecceeee
Confidence 999999999876544444445555677789999999997543
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.87 E-value=9.9e-21 Score=153.63 Aligned_cols=194 Identities=14% Similarity=0.247 Sum_probs=145.6
Q ss_pred eeEEEEECCCCCeEeCC--CCCCCCCCCCceeEEEEeCCEEEEEeCcC----CCCcccccceEEEEccCCeEEeCC--CC
Q 048803 81 YRITVLELGSGEWSELP--PIPGFPDGLPLFCQLSAVGPELVVIGGLD----LTTWEASSSVFVFNIISATWRRGA--DM 152 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~lyv~GG~~----~~~~~~~~~~~~yd~~t~~W~~~~--~~ 152 (289)
++++.||...+.|+.+. .-|.||+.+ .++++-.+.+|++||.- +.......++|.||..|++|+++. .-
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRssh---q~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSH---QAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccc---eeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 68999999999999764 345666655 23444458999999962 222346789999999999999884 33
Q ss_pred CCCCccceeEEEecCCEEEEEcCCCCCC---cccCceEEEEcCCCceEeCCC---CCccccccceEEE-CCEEEEEeeec
Q 048803 153 PGGRRMLFGCASDGDRTVYVAGGHDEDK---NALKSAMAYDVARDEWASLPD---MSRERDECKAVFH-CGKLLVIGGYS 225 (289)
Q Consensus 153 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~~~~~-~~~l~~~gG~~ 225 (289)
| .+|+.|-+.+ .+.+|++|||.-+.. ...+++++||+.|-+|+++.+ .|.+|++++.++. +|.||++||+.
T Consensus 175 P-S~RSGHRMva-wK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 175 P-SPRSGHRMVA-WKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred C-CCCccceeEE-eeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchh
Confidence 4 4677777776 489999999975542 247899999999999999865 4789999999887 99999999986
Q ss_pred CC------CCCcccceEEEEECCC-----CceeecccccccCCCCCCceee-eeCCeEEEEeCcee
Q 048803 226 TN------AQGRFERHAEAFDAAA-----QQWGPVEEDFMETATCPRSCAG-VDSNDLYMCREGDV 279 (289)
Q Consensus 226 ~~------~~~~~~~~v~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~-~~~~~ly~~GG~~~ 279 (289)
.. ..|...++++.+++.. -+|..+.....++..+..++++ .-+++-|.|||-..
T Consensus 253 K~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D 318 (521)
T KOG1230|consen 253 KQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCD 318 (521)
T ss_pred HhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceec
Confidence 42 1233456789999987 4688887665555555555444 46779999999544
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.86 E-value=9.6e-21 Score=153.70 Aligned_cols=178 Identities=16% Similarity=0.274 Sum_probs=137.0
Q ss_pred CCCCCCCCCCceeEEEEe--CCEEEEEeCc--CCCCcccccceEEEEccCCeEEeC--CCCCCCCccceeEEEecCCEEE
Q 048803 98 PIPGFPDGLPLFCQLSAV--GPELVVIGGL--DLTTWEASSSVFVFNIISATWRRG--ADMPGGRRMLFGCASDGDRTVY 171 (289)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~--~~~lyv~GG~--~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~~~~~~iy 171 (289)
+.|.||... ++.+. .+.|+++||. ++..+...++++.||..+++|+.+ |.-| +||+.|.++++-.+.+|
T Consensus 62 ~~PspRsn~----sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P-~pRsshq~va~~s~~l~ 136 (521)
T KOG1230|consen 62 PPPSPRSNP----SLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAP-PPRSSHQAVAVPSNILW 136 (521)
T ss_pred CCCCCCCCc----ceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCc-CCCccceeEEeccCeEE
Confidence 345666554 44433 4689999995 444446789999999999999987 4444 67888888876678999
Q ss_pred EEcCCCCC--C---cccCceEEEEcCCCceEeCC--CCCccccccceEEECCEEEEEeeecCC-CCCcccceEEEEECCC
Q 048803 172 VAGGHDED--K---NALKSAMAYDVARDEWASLP--DMSRERDECKAVFHCGKLLVIGGYSTN-AQGRFERHAEAFDAAA 243 (289)
Q Consensus 172 v~GG~~~~--~---~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~l~~~gG~~~~-~~~~~~~~v~~yd~~~ 243 (289)
++||--.. . -...+++.||..+++|+++. .-|.+|++|.+++...+|++|||.... .+..++|+|++||+++
T Consensus 137 ~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 137 LFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT 216 (521)
T ss_pred EeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc
Confidence 99995321 1 12468999999999999885 468899999999999999999997653 3446889999999999
Q ss_pred CceeecccccccCCCCCCceeeee-CCeEEEEeCceee
Q 048803 244 QQWGPVEEDFMETATCPRSCAGVD-SNDLYMCREGDVM 280 (289)
Q Consensus 244 ~~W~~~~~~~~~~~~~~~~~~~~~-~~~ly~~GG~~~~ 280 (289)
-+|+.+......+..+..+|+++. +|.|||.||+...
T Consensus 217 ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~ 254 (521)
T KOG1230|consen 217 YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQ 254 (521)
T ss_pred eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHh
Confidence 999999874433455666677765 9999999997643
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.69 E-value=1.4e-15 Score=127.19 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=132.6
Q ss_pred EECCCCCe--EeCCC-------CCCCCCCCCceeEEEEeCCEEEEEeCcCCCC-------cccccceEEEEccCCe----
Q 048803 86 LELGSGEW--SELPP-------IPGFPDGLPLFCQLSAVGPELVVIGGLDLTT-------WEASSSVFVFNIISAT---- 145 (289)
Q Consensus 86 ~d~~~~~W--~~~~~-------~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~-------~~~~~~~~~yd~~t~~---- 145 (289)
|.....+| +++.+ .|.||.++ +...++++-|+|||..... -+.++++++.++.-+.
T Consensus 111 YELQasRWeWkrlkp~~p~nG~pPCPRlGH----SFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~ 186 (830)
T KOG4152|consen 111 YELQASRWEWKRLKPKTPKNGPPPCPRLGH----SFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVA 186 (830)
T ss_pred HHhhhhhhhHhhcCCCCCCCCCCCCCccCc----eeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEE
Confidence 55555554 44432 34555554 8889999999999983221 2568889988877543
Q ss_pred EEeC---CCCCCCCccceeEEEec-----CCEEEEEcCCCCCCcccCceEEEEcCCCceEeCC---CCCccccccceEEE
Q 048803 146 WRRG---ADMPGGRRMLFGCASDG-----DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLP---DMSRERDECKAVFH 214 (289)
Q Consensus 146 W~~~---~~~~~~~~~~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~ 214 (289)
|... ..+| .+|..|.++... ..++||+||+..- .+.+++.+|++|-.|.+.. -.|-+|.-|+++.+
T Consensus 187 W~ip~t~Gv~P-~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I 263 (830)
T KOG4152|consen 187 WDIPITYGVLP-PPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI 263 (830)
T ss_pred EecccccCCCC-CCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCCCCCCcccccceee
Confidence 8654 4566 566666666531 3479999999763 5778999999999998764 35667888999999
Q ss_pred CCEEEEEeeecCCC-----------CCcccceEEEEECCCCceeecccc----cccCCCCCCceeeeeCCeEEEEeCcee
Q 048803 215 CGKLLVIGGYSTNA-----------QGRFERHAEAFDAAAQQWGPVEED----FMETATCPRSCAGVDSNDLYMCREGDV 279 (289)
Q Consensus 215 ~~~l~~~gG~~~~~-----------~~~~~~~v~~yd~~~~~W~~~~~~----~~~~~~~~~~~~~~~~~~ly~~GG~~~ 279 (289)
++|+|++||.-... .=+..+++-++++.++.|..+-.. .-.++.+..+|++.++.+||+..|.|+
T Consensus 264 GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 264 GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccch
Confidence 99999999953210 012456788899999999876321 113345566788889999999999775
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.59 E-value=2e-14 Score=115.54 Aligned_cols=172 Identities=22% Similarity=0.336 Sum_probs=128.7
Q ss_pred EeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccC--CeEEeCCCCCCCCccceeEEEecCCEEE
Q 048803 94 SELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIIS--ATWRRGADMPGGRRMLFGCASDGDRTVY 171 (289)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~~~~~iy 171 (289)
..+|.+|.+.... +-+.+++.+||.=|. .....+..|+.. ..|+++...|..+|.....++ .+++||
T Consensus 28 ~~lPdlPvg~KnG----~Ga~ig~~~YVGLGs------~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~-~~~kLy 96 (381)
T COG3055 28 GQLPDLPVGFKNG----AGALIGDTVYVGLGS------AGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAV-IGGKLY 96 (381)
T ss_pred ccCCCCCcccccc----ccceecceEEEEecc------CCccceehhhhcCCCCceEcccCCCcccccchhee-eCCeEE
Confidence 4678888888765 677889999987663 234566777664 469999999988887765555 599999
Q ss_pred EEcCCCCCCc----ccCceEEEEcCCCceEeCCC-CCccccccceEEECC-EEEEEeeecCCC-----------------
Q 048803 172 VAGGHDEDKN----ALKSAMAYDVARDEWASLPD-MSRERDECKAVFHCG-KLLVIGGYSTNA----------------- 228 (289)
Q Consensus 172 v~GG~~~~~~----~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~-~l~~~gG~~~~~----------------- 228 (289)
|+||...... ..++++.||+.+++|.++.. .|....++.++.+++ +++++||++..-
T Consensus 97 vFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 97 VFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA 176 (381)
T ss_pred EeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence 9999865432 36789999999999999975 455666777788887 999999986431
Q ss_pred --------------CCcccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCce
Q 048803 229 --------------QGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 229 --------------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
+..+...+..|||++++|+.+... |-..+..++++.-+++|.++-|.-
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aGsa~~~~~n~~~lInGEi 238 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAGSAVVIKGNKLTLINGEI 238 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC--cccCccCcceeecCCeEEEEccee
Confidence 112456799999999999999873 333344444555677799988853
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.56 E-value=1e-13 Score=111.56 Aligned_cols=236 Identities=14% Similarity=0.161 Sum_probs=151.4
Q ss_pred HHHHhhhHHhhhcChhHHHHhhhcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCCC-CCCCCC
Q 048803 27 ISSVCKGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPI-PGFPDG 105 (289)
Q Consensus 27 ~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-~~~~~~ 105 (289)
+..-.|.|.++..=|--.+.....+.-+.-+|++++.-...+.+ ....+++++|||.+++|+.+... |....
T Consensus 65 L~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~------~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~- 137 (381)
T COG3055 65 LKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSS------PQVFNDAYRYDPSTNSWHKLDTRSPTGLV- 137 (381)
T ss_pred hhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCC------ceEeeeeEEecCCCChhheeccccccccc-
Confidence 45567889988877765555444444444455554443222111 11227899999999999988753 22222
Q ss_pred CCceeEEEEeCC-EEEEEeCcCCCC--------------------------------cccccceEEEEccCCeEEeCCCC
Q 048803 106 LPLFCQLSAVGP-ELVVIGGLDLTT--------------------------------WEASSSVFVFNIISATWRRGADM 152 (289)
Q Consensus 106 ~~~~~~~~~~~~-~lyv~GG~~~~~--------------------------------~~~~~~~~~yd~~t~~W~~~~~~ 152 (289)
.+..++.++ +||++||.+..- +....++..|+|.++.|+.+...
T Consensus 138 ---G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~ 214 (381)
T COG3055 138 ---GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN 214 (381)
T ss_pred ---cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC
Confidence 235666666 999999974110 13456789999999999999988
Q ss_pred CCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCC--CceEeCCCCCccccc----cce---EEECCEEEEEee
Q 048803 153 PGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVAR--DEWASLPDMSRERDE----CKA---VFHCGKLLVIGG 223 (289)
Q Consensus 153 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~----~~~---~~~~~~l~~~gG 223 (289)
|..+.+..+.+. .++++.++-|.-....+...+..++... .+|..++++|.+... .+. -..++.+.+.||
T Consensus 215 pf~~~aGsa~~~-~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GG 293 (381)
T COG3055 215 PFYGNAGSAVVI-KGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGG 293 (381)
T ss_pred cccCccCcceee-cCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecC
Confidence 866655532222 3676888877655444455667777764 479999887754432 111 235778888887
Q ss_pred ecCC-------------CCC---cccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCce
Q 048803 224 YSTN-------------AQG---RFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 224 ~~~~-------------~~~---~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
.... ..| .+.+.|+.+| ++.|+.+..++ ...... ..+..++.+|++||.+
T Consensus 294 AnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp--~~l~YG-~s~~~nn~vl~IGGE~ 359 (381)
T COG3055 294 ANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELP--QGLAYG-VSLSYNNKVLLIGGET 359 (381)
T ss_pred CCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccC--CCccce-EEEecCCcEEEEcccc
Confidence 5421 111 2556788888 99999999954 322222 3456799999999964
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.29 E-value=1.3e-11 Score=73.43 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=41.7
Q ss_pred ccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccc
Q 048803 157 RMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRER 206 (289)
Q Consensus 157 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 206 (289)
|..+++++ .+++|||+||..+.....+++++||+++++|+.+++||.+|
T Consensus 2 R~~~s~v~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVV-VGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEE-ECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 45566666 59999999999875566789999999999999999999876
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.20 E-value=7.7e-11 Score=70.01 Aligned_cols=44 Identities=27% Similarity=0.423 Sum_probs=39.2
Q ss_pred eEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCC
Q 048803 110 CQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPG 154 (289)
Q Consensus 110 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 154 (289)
+++++++++|||+||..... ...+++++||+.|++|+.+++||.
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSG-KYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CEEEEECCEEEEECCCCCCC-CccccEEEEcCCCCcEEECCCCCC
Confidence 38899999999999997642 578999999999999999999994
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.19 E-value=4e-11 Score=100.64 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=114.3
Q ss_pred EEEEeCC--EEEEEeCcCCCCcccccceEEEEccCCeEEeCC---CCCCCCccceeEEEec-CCEEEEEcCCCCCC----
Q 048803 111 QLSAVGP--ELVVIGGLDLTTWEASSSVFVFNIISATWRRGA---DMPGGRRMLFGCASDG-DRTVYVAGGHDEDK---- 180 (289)
Q Consensus 111 ~~~~~~~--~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~---- 180 (289)
-++...+ .||+.||+++.. ...+.|.|+...+.|..+. ..| ..|..|-.+... ..++|+.|-+-+..
T Consensus 265 QMV~~~~~~CiYLYGGWdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~P-G~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~ 341 (723)
T KOG2437|consen 265 QMVIDVQTECVYLYGGWDGTQ--DLADFWAYSVKENQWTCINRDTEGP-GARSCHRMVIDISRRKLYLLGRYLDSSVRNS 341 (723)
T ss_pred eEEEeCCCcEEEEecCcccch--hHHHHHhhcCCcceeEEeecCCCCC-cchhhhhhhhhhhHhHHhhhhhccccccccc
Confidence 5555544 899999998774 7899999999999998763 355 344444444322 45899999874322
Q ss_pred -cccCceEEEEcCCCceEeCCC------CCccccccceEEECCE--EEEEeeecCCCCCcccceEEEEECCCCceeeccc
Q 048803 181 -NALKSAMAYDVARDEWASLPD------MSRERDECKAVFHCGK--LLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEE 251 (289)
Q Consensus 181 -~~~~~~~~yd~~~~~W~~~~~------~~~~~~~~~~~~~~~~--l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 251 (289)
...++++.||..++.|..+.- -|.....|.+++.+++ |||+||+....+...+..++.||.....|.....
T Consensus 342 ~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e 421 (723)
T KOG2437|consen 342 KSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLRE 421 (723)
T ss_pred cccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHH
Confidence 245789999999999997741 3445567888888877 9999998754332245679999999999987765
Q ss_pred ccccCC-------CCCCce--eeeeCCeEEEEeCce
Q 048803 252 DFMETA-------TCPRSC--AGVDSNDLYMCREGD 278 (289)
Q Consensus 252 ~~~~~~-------~~~~~~--~~~~~~~ly~~GG~~ 278 (289)
...... .+-.+| .+.-+..+|++||..
T Consensus 422 ~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 422 DSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred HHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 321110 111112 234678899999853
No 32
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.08 E-value=2.5e-08 Score=79.74 Aligned_cols=196 Identities=15% Similarity=0.103 Sum_probs=110.5
Q ss_pred CCCCCCCCCceeEEEEECCCCCeEeCCCCCCCCCCCCc-eeEEE----EeCCEEEEEeCcCCCCcccccceEEEEccCCe
Q 048803 71 GVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPL-FCQLS----AVGPELVVIGGLDLTTWEASSSVFVFNIISAT 145 (289)
Q Consensus 71 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~-~~~~~----~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~ 145 (289)
+|+.|+... ..+.++||.|++|..+|+.+.+...... ...+. .-.-+|+.+...... .....+++|+..+++
T Consensus 5 nGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~~~~~ 81 (230)
T TIGR01640 5 DGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTLGSNS 81 (230)
T ss_pred ceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEeCCCC
Confidence 344444332 5788999999999999875443111100 01111 112356666443211 134678999999999
Q ss_pred EEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEe-CCCCCccc----cccceEEECCEEEE
Q 048803 146 WRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWAS-LPDMSRER----DECKAVFHCGKLLV 220 (289)
Q Consensus 146 W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~----~~~~~~~~~~~l~~ 220 (289)
|+.+...+........ .+..+|.+|.+...... .....+..||+.+++|.+ ++. |... .....+.++|+|.+
T Consensus 82 Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~-P~~~~~~~~~~~L~~~~G~L~~ 158 (230)
T TIGR01640 82 WRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPL-PCGNSDSVDYLSLINYKGKLAV 158 (230)
T ss_pred ccccccCCCCccccCC-eEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeec-CccccccccceEEEEECCEEEE
Confidence 9998743311111122 33359999998753321 111269999999999995 543 3222 23456778999998
Q ss_pred EeeecCCCCCcccceEEEEE-CCCCceeecccccccCCCCC----CceeeeeCCeEEEEeC
Q 048803 221 IGGYSTNAQGRFERHAEAFD-AAAQQWGPVEEDFMETATCP----RSCAGVDSNDLYMCRE 276 (289)
Q Consensus 221 ~gG~~~~~~~~~~~~v~~yd-~~~~~W~~~~~~~~~~~~~~----~~~~~~~~~~ly~~GG 276 (289)
+....... . -.|++.+ ...++|++.-....+..... ....+..+++|++...
T Consensus 159 v~~~~~~~---~-~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 159 LKQKKDTN---N-FDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred EEecCCCC---c-EEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 87543211 1 2567764 44667987644332111111 1123345788888765
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.02 E-value=2.5e-10 Score=66.92 Aligned_cols=47 Identities=28% Similarity=0.498 Sum_probs=39.4
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCC
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMS 203 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 203 (289)
+|..+++++ .+++||++||........+++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVV-VGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEE-ETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEE-ECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 355666666 59999999999886667889999999999999998876
No 34
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.02 E-value=2.5e-10 Score=66.75 Aligned_cols=43 Identities=30% Similarity=0.585 Sum_probs=37.4
Q ss_pred CCCChHHHHHHHhhcCChhhHHHHHHHhhhHHhhhcChhHHHH
Q 048803 4 IPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRN 46 (289)
Q Consensus 4 ~~~Lp~dl~~~il~~lp~~~l~~~~~v~k~W~~l~~~~~~~~~ 46 (289)
|..||+|++.+||.+||..++.++++|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999988766553
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.01 E-value=9.7e-10 Score=64.37 Aligned_cols=46 Identities=28% Similarity=0.480 Sum_probs=40.0
Q ss_pred cccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccc
Q 048803 205 ERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEED 252 (289)
Q Consensus 205 ~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 252 (289)
+|..+++++++++||++||.... ....+.+++||+.+++|+.++.+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN--NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST--SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc--CceeeeEEEEeCCCCEEEEcCCC
Confidence 57789999999999999999872 34788999999999999999874
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.00 E-value=1.2e-09 Score=64.53 Aligned_cols=48 Identities=23% Similarity=0.501 Sum_probs=42.2
Q ss_pred CCEEEEEcCCC-CCCcccCceEEEEcCCCceEeCCCCCccccccceEEE
Q 048803 167 DRTVYVAGGHD-EDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFH 214 (289)
Q Consensus 167 ~~~iyv~GG~~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 214 (289)
+++|||+||.. ......++++.||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 47899999998 4456789999999999999999999999999988763
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.92 E-value=2.9e-09 Score=62.83 Aligned_cols=48 Identities=31% Similarity=0.486 Sum_probs=39.6
Q ss_pred cccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccc
Q 048803 205 ERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEED 252 (289)
Q Consensus 205 ~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 252 (289)
+|..|++++++++||++||+.........+++++||+++++|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 477899999999999999993222344678999999999999999863
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.90 E-value=7e-09 Score=61.14 Aligned_cols=48 Identities=31% Similarity=0.480 Sum_probs=39.7
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEE
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCAS 164 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 164 (289)
+++|||+||.........+++++||+.+++|++++++| .+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P-~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLP-PPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCC-CCccceEEEE
Confidence 57899999998332357899999999999999999988 6777777664
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.89 E-value=2.2e-09 Score=63.41 Aligned_cols=47 Identities=32% Similarity=0.655 Sum_probs=29.9
Q ss_pred ccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCC
Q 048803 157 RMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMS 203 (289)
Q Consensus 157 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 203 (289)
|..|+++.+.+++||++||........+++++||+++++|++++++|
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred cceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 55666666547899999999876567889999999999999998877
No 40
>smart00612 Kelch Kelch domain.
Probab=98.86 E-value=4.8e-09 Score=61.37 Aligned_cols=47 Identities=34% Similarity=0.635 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECC
Q 048803 169 TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCG 216 (289)
Q Consensus 169 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 216 (289)
+||++||.... ...+++++||+.+++|+.+++|+.+|..+++++++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998652 456789999999999999999999999998888764
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.85 E-value=1.3e-08 Score=60.03 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=37.4
Q ss_pred CccceeEEEecCCEEEEEcCC--CCCCcccCceEEEEcCCCceEeCCCCC
Q 048803 156 RRMLFGCASDGDRTVYVAGGH--DEDKNALKSAMAYDVARDEWASLPDMS 203 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~~~~W~~~~~~~ 203 (289)
+|..+++++ .+++|||+||. .......+++++||+++++|+.+++++
T Consensus 1 ~r~~hs~~~-~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVV-LDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEE-ECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 355666666 59999999999 333446789999999999999998775
No 42
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.80 E-value=2.4e-07 Score=73.35 Aligned_cols=149 Identities=11% Similarity=0.111 Sum_probs=94.9
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccC----CeEEeCCC-CCCC
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIIS----ATWRRGAD-MPGG 155 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t----~~W~~~~~-~~~~ 155 (289)
..-..||+.+++++.+...-+..+.. ....-+++++++||... ....+..|++.+ ..|.+.+. |. .
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSg----g~~L~dG~ll~tGG~~~----G~~~ir~~~p~~~~~~~~w~e~~~~m~-~ 116 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSG----GAFLPDGRLLQTGGDND----GNKAIRIFTPCTSDGTCDWTESPNDMQ-S 116 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccC----cCCCCCCCEEEeCCCCc----cccceEEEecCCCCCCCCceECccccc-C
Confidence 34567999999999876433322221 34445789999999754 245677888875 57988764 66 5
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC-----ceEeCCC----CCccccccceEEECCEEEEEeeecC
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD-----EWASLPD----MSRERDECKAVFHCGKLLVIGGYST 226 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-----~W~~~~~----~~~~~~~~~~~~~~~~l~~~gG~~~ 226 (289)
+|-+.+....-+|+++|+||.... ..|.+..... .|..+.. .+...+......-+|+||+++..
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-- 189 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-- 189 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--
Confidence 666666666459999999998732 2444443221 2322222 12222233344459999999864
Q ss_pred CCCCcccceEEEEECCCCce-eeccccc
Q 048803 227 NAQGRFERHAEAFDAAAQQW-GPVEEDF 253 (289)
Q Consensus 227 ~~~~~~~~~v~~yd~~~~~W-~~~~~~~ 253 (289)
.-..||+.++++ +.++.++
T Consensus 190 --------~s~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 190 --------GSIIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred --------CcEEEeCCCCeEEeeCCCCC
Confidence 347789999987 6777654
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.78 E-value=1e-08 Score=60.54 Aligned_cols=43 Identities=26% Similarity=0.543 Sum_probs=28.4
Q ss_pred eEEEEe-CCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCC
Q 048803 110 CQLSAV-GPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMP 153 (289)
Q Consensus 110 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 153 (289)
++++.+ +++||++||.+..+ ...+++++||+.+++|++++++|
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~-~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSG-SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-T-EE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEEeCCeEEEECCCCCCC-cccCCEEEEECCCCEEEECCCCC
Confidence 367766 58999999997664 57899999999999999998876
No 44
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.78 E-value=1e-08 Score=58.01 Aligned_cols=39 Identities=33% Similarity=0.555 Sum_probs=36.7
Q ss_pred ChHHHHHHHhhcCChhhHHHHHHHhhhHHhhhcChhHHH
Q 048803 7 LPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRR 45 (289)
Q Consensus 7 Lp~dl~~~il~~lp~~~l~~~~~v~k~W~~l~~~~~~~~ 45 (289)
||+|++.+||.+|+..++.++++|||+|+.++..+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999987754
No 45
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.77 E-value=8.5e-06 Score=68.44 Aligned_cols=40 Identities=28% Similarity=0.530 Sum_probs=36.5
Q ss_pred CCCCCCChHHHHHHHhhcC-ChhhHHHHHHHhhhHHhhhcC
Q 048803 1 MDLIPDLPNEIALECLSRV-SYKQFATISSVCKGWKSEISR 40 (289)
Q Consensus 1 ~~~~~~Lp~dl~~~il~~l-p~~~l~~~~~v~k~W~~l~~~ 40 (289)
|..++.||+|||..|..+| ..-++.|+++||+.||+.+..
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 6678999999999999999 577899999999999998775
No 46
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.71 E-value=5.6e-09 Score=61.39 Aligned_cols=43 Identities=35% Similarity=0.601 Sum_probs=36.6
Q ss_pred CCCChHHHHHHHhhcCChhhHHHHHHHhhhHHhhhcChhHHHH
Q 048803 4 IPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRN 46 (289)
Q Consensus 4 ~~~Lp~dl~~~il~~lp~~~l~~~~~v~k~W~~l~~~~~~~~~ 46 (289)
|..||+|++.+||.+++..++.+++.|||+|++++.++.+...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 4679999999999999999999999999999999999887654
No 47
>smart00612 Kelch Kelch domain.
Probab=98.60 E-value=9.1e-08 Score=55.82 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=35.4
Q ss_pred EEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEE
Q 048803 118 ELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCAS 164 (289)
Q Consensus 118 ~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 164 (289)
+||++||.... ...+++++||+.+++|+.+++|+ .++..+++++
T Consensus 1 ~iyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~ 44 (47)
T smart00612 1 KIYVVGGFDGG--QRLKSVEVYDPETNKWTPLPSMP-TPRSGHGVAV 44 (47)
T ss_pred CEEEEeCCCCC--ceeeeEEEECCCCCeEccCCCCC-CccccceEEE
Confidence 48999998653 36788999999999999999999 4566665554
No 48
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.49 E-value=1.8e-07 Score=79.18 Aligned_cols=135 Identities=21% Similarity=0.307 Sum_probs=92.1
Q ss_pred CCeEEeCCCCC---------CCCccceeEEEec-CCEEEEEcCCCCCCcccCceEEEEcCCCceEeCC---CCCcccccc
Q 048803 143 SATWRRGADMP---------GGRRMLFGCASDG-DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLP---DMSRERDEC 209 (289)
Q Consensus 143 t~~W~~~~~~~---------~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~ 209 (289)
+-+|.+++... ...|..|..+... +.=||+.||+++. ..+.++++|+...+.|..+. ..|..|..|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 45687765432 2356666655422 3469999999875 35788999999999999874 367788888
Q ss_pred ceEEEC--CEEEEEeeecCCCC---CcccceEEEEECCCCceeecccccc---cCCCCCCceeeeeCCe--EEEEeCce
Q 048803 210 KAVFHC--GKLLVIGGYSTNAQ---GRFERHAEAFDAAAQQWGPVEEDFM---ETATCPRSCAGVDSND--LYMCREGD 278 (289)
Q Consensus 210 ~~~~~~--~~l~~~gG~~~~~~---~~~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~~--ly~~GG~~ 278 (289)
.++.-. .|||++|-+-.... -....++|+||.+++.|..+..... .+....-+++++.+++ |||+||..
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 887654 48999996543211 1134579999999999998754211 1122233467777777 99999953
No 49
>PLN02772 guanylate kinase
Probab=98.49 E-value=1.3e-06 Score=73.69 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=64.8
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeC---CCCCccccccceEEE-CCEEEEEeeecCCCCCc
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASL---PDMSRERDECKAVFH-CGKLLVIGGYSTNAQGR 231 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~ 231 (289)
++..+.+.+ .++++||+||..+.....+.+++||..|++|... .+.|.+|.+|+++++ +++|+++++....+
T Consensus 24 ~~~~~tav~-igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~--- 99 (398)
T PLN02772 24 PKNRETSVT-IGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD--- 99 (398)
T ss_pred CCCcceeEE-ECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc---
Confidence 444555555 5999999999877543567899999999999865 478889999999988 68999998765433
Q ss_pred ccceEEEEECCCC
Q 048803 232 FERHAEAFDAAAQ 244 (289)
Q Consensus 232 ~~~~v~~yd~~~~ 244 (289)
+++|.+...|.
T Consensus 100 --~~~w~l~~~t~ 110 (398)
T PLN02772 100 --DSIWFLEVDTP 110 (398)
T ss_pred --cceEEEEcCCH
Confidence 47888877664
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.48 E-value=3.8e-07 Score=51.60 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=34.8
Q ss_pred CCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCC
Q 048803 202 MSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
+|.+|..|++++++++||++||... ......+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 4778999999999999999999985 2344778999999876
No 51
>PLN02772 guanylate kinase
Probab=98.44 E-value=1.1e-06 Score=74.05 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=55.4
Q ss_pred ccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCcee-eeeCCeEEEEeCce
Q 048803 204 RERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCA-GVDSNDLYMCREGD 278 (289)
Q Consensus 204 ~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~ly~~GG~~ 278 (289)
.++..++++.+++++|++||.+.. +...+.+++||..+++|........++..+..+++ +..+++|+|+++..
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~--~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEG--NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCC--ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 367778999999999999997652 33567899999999999988755544444544444 45589999998743
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.39 E-value=2.4e-05 Score=62.60 Aligned_cols=137 Identities=9% Similarity=0.081 Sum_probs=82.2
Q ss_pred cceEEEEccCCeEEeCCCCCCCC--ccc--eeEEE--ecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccc
Q 048803 134 SSVFVFNIISATWRRGADMPGGR--RML--FGCAS--DGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRER 206 (289)
Q Consensus 134 ~~~~~yd~~t~~W~~~~~~~~~~--~~~--~~~~~--~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 206 (289)
..+.++||.|++|+.+|+.+... ... .+... ..+. +|..+...... .....+++|++.+++|+.+...+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCCCCc
Confidence 56889999999999998654211 111 11111 1112 44444332111 12346899999999999987433221
Q ss_pred -cccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceee-cccccccCCC--CCCceeeeeCCeEEEEeC
Q 048803 207 -DECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGP-VEEDFMETAT--CPRSCAGVDSNDLYMCRE 276 (289)
Q Consensus 207 -~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~--~~~~~~~~~~~~ly~~GG 276 (289)
.....+.++|.||-+....... ....|..||..+++|++ ++.+ .... .....++..+|+|.++..
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~P--~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPLP--CGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred cccCCeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeecC--ccccccccceEEEEECCEEEEEEe
Confidence 1122677899999987543211 11269999999999996 5431 1111 123356778899998864
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.29 E-value=3.7e-05 Score=61.09 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=85.8
Q ss_pred ccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCC----CceEeCC-CCCcccc
Q 048803 133 SSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVAR----DEWASLP-DMSRERD 207 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~----~~W~~~~-~~~~~~~ 207 (289)
......||+.|++++.+.... ..- ..+.+..-+|++.++||..+. ...+..|++.+ ..|.+.+ .|..+|.
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t-d~F-CSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT-DTF-CSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC-CCc-ccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCc
Confidence 344567999999999876443 221 122222239999999998653 34577888865 6798775 5899999
Q ss_pred ccceEEE-CCEEEEEeeecCCCCCcccceEEEEECCCC-----ceeecccc--cccCCCCCCceeeeeCCeEEEEeCcee
Q 048803 208 ECKAVFH-CGKLLVIGGYSTNAQGRFERHAEAFDAAAQ-----QWGPVEED--FMETATCPRSCAGVDSNDLYMCREGDV 279 (289)
Q Consensus 208 ~~~~~~~-~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~-----~W~~~~~~--~~~~~~~~~~~~~~~~~~ly~~GG~~~ 279 (289)
+++...+ ||+++|+||.... ..+.+..... .|..+... ..+.-.+++ ....-+|+||+++..+.
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~-------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~-~~llPdG~lFi~an~~s 191 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP-------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPF-VHLLPDGNLFIFANRGS 191 (243)
T ss_pred cccceECCCCCEEEEeCcCCC-------cccccCCccCCCCceeeecchhhhccCccccCce-EEEcCCCCEEEEEcCCc
Confidence 9998875 8999999998732 2343333221 12212110 011122232 34457999999998665
Q ss_pred ecc
Q 048803 280 MAL 282 (289)
Q Consensus 280 ~~~ 282 (289)
.-+
T Consensus 192 ~i~ 194 (243)
T PF07250_consen 192 IIY 194 (243)
T ss_pred EEE
Confidence 333
No 54
>PF13854 Kelch_5: Kelch motif
Probab=98.27 E-value=3.1e-06 Score=47.86 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=32.6
Q ss_pred CCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccC
Q 048803 99 IPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIIS 143 (289)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t 143 (289)
+|.+|..+ +++.++++||++||......+..+++|++|..+
T Consensus 1 ~P~~R~~h----s~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGH----SAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccce----EEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 36667765 888999999999999852225789999999876
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.95 E-value=0.00046 Score=56.40 Aligned_cols=45 Identities=31% Similarity=0.508 Sum_probs=40.4
Q ss_pred CCCCCCh----HHHHHHHhhcCChhhHHHHHHHhhhHHhhhcChhHHHH
Q 048803 2 DLIPDLP----NEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRN 46 (289)
Q Consensus 2 ~~~~~Lp----~dl~~~il~~lp~~~l~~~~~v~k~W~~l~~~~~~~~~ 46 (289)
+.|..|| +++.++||+.|...+|+...+|||+|+.+++.+...+.
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 3466799 99999999999999999999999999999999877554
No 56
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.84 E-value=0.0058 Score=51.86 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=70.7
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCccc-----ccceEEEEc--------cCCeEE
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEA-----SSSVFVFNI--------ISATWR 147 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~-----~~~~~~yd~--------~t~~W~ 147 (289)
....+||+.+..-..+|.++.+.... .++.++++||++...-...... .-++..|++ ..-.|+
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~pk~~p----isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~ 161 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSPKRCP----ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWR 161 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCCCcce----EEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEE
Confidence 34678999999888888877655543 6778899999998763221000 233444552 223588
Q ss_pred eCCCCCCCCcc------ceeEEEecCCEEEEE-cCCCCCCcccCceEEEEcCCCceEeCCC
Q 048803 148 RGADMPGGRRM------LFGCASDGDRTVYVA-GGHDEDKNALKSAMAYDVARDEWASLPD 201 (289)
Q Consensus 148 ~~~~~~~~~~~------~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~~yd~~~~~W~~~~~ 201 (289)
.+|+.|..... ..+.+++.+..|+|. .+.. ...+.||.++.+|+++.+
T Consensus 162 ~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 162 SLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccc
Confidence 98876633222 334555425677773 2211 248999999999999975
No 57
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.84 E-value=0.0031 Score=53.48 Aligned_cols=124 Identities=16% Similarity=0.226 Sum_probs=78.5
Q ss_pred eCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcc----cCceEEE-
Q 048803 115 VGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNA----LKSAMAY- 189 (289)
Q Consensus 115 ~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~----~~~~~~y- 189 (289)
.+++|+.++. .....+||..|..-...|.+..+.... .++..+++||++......... ...++.+
T Consensus 75 ~gskIv~~d~--------~~~t~vyDt~t~av~~~P~l~~pk~~p--isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQ--------SGRTLVYDTDTRAVATGPRLHSPKRCP--ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcC--------CCCeEEEECCCCeEeccCCCCCCCcce--EEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 4889998854 244889999999988888887444333 333347889999876432111 0145554
Q ss_pred -E--------cCCCceEeCCCCCccccc-------cceEEE-CCEEEEE-eeecCCCCCcccceEEEEECCCCceeeccc
Q 048803 190 -D--------VARDEWASLPDMSRERDE-------CKAVFH-CGKLLVI-GGYSTNAQGRFERHAEAFDAAAQQWGPVEE 251 (289)
Q Consensus 190 -d--------~~~~~W~~~~~~~~~~~~-------~~~~~~-~~~l~~~-gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 251 (289)
+ ...-.|+.++++|..+.. .+-+++ +..|++. .+.. ...++||.++.+|+.+..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccc
Confidence 3 122368888887754432 223455 5568873 3221 147999999999999977
Q ss_pred ccccC
Q 048803 252 DFMET 256 (289)
Q Consensus 252 ~~~~~ 256 (289)
=.+|-
T Consensus 217 W~LPF 221 (342)
T PF07893_consen 217 WMLPF 221 (342)
T ss_pred eecCc
Confidence 55544
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=4.8e-05 Score=61.24 Aligned_cols=41 Identities=29% Similarity=0.411 Sum_probs=37.3
Q ss_pred CCCChHHHHHHHhhcCChhhHHHHHHHhhhHHhhhcChhHH
Q 048803 4 IPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFR 44 (289)
Q Consensus 4 ~~~Lp~dl~~~il~~lp~~~l~~~~~v~k~W~~l~~~~~~~ 44 (289)
+.+|||||++.||+.|+.+.|.+++.|||+|..+.+....+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 45899999999999999999999999999999998876543
No 59
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.51 E-value=0.0046 Score=50.58 Aligned_cols=123 Identities=12% Similarity=0.252 Sum_probs=72.3
Q ss_pred EEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeC
Q 048803 120 VVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASL 199 (289)
Q Consensus 120 yv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~ 199 (289)
||-|-++..+.-....+-.||..+.+|.....--... -.....+-++.+|+.|-..-.......+..||.++.+|..+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~--V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT--VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL 79 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE--EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec
Confidence 4433344433224667888999999998875432111 12222223778888876543332345689999999999888
Q ss_pred CC-----CCccccccceEEE-CCEEEEEeeecCCCCCcccceEEEEECCCCceeeccc
Q 048803 200 PD-----MSRERDECKAVFH-CGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEE 251 (289)
Q Consensus 200 ~~-----~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 251 (289)
+. +|.+........- ..++++.|..... ...+..|| ..+|+.+..
T Consensus 80 ~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-----~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 80 GGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-----STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CCcccccCCCcEEEEEeeccCCceEEEeceecCC-----CceEEEEc--CCceEeccc
Confidence 65 2333211111112 3467777765221 13577775 778988876
No 60
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.50 E-value=0.015 Score=46.61 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=72.8
Q ss_pred EEEEE-eCcCCCCcccccceEEEEccCCe--------E---EeCCCCCCCCccceeEEEec---CCEEEEEcCCCCC---
Q 048803 118 ELVVI-GGLDLTTWEASSSVFVFNIISAT--------W---RRGADMPGGRRMLFGCASDG---DRTVYVAGGHDED--- 179 (289)
Q Consensus 118 ~lyv~-GG~~~~~~~~~~~~~~yd~~t~~--------W---~~~~~~~~~~~~~~~~~~~~---~~~iyv~GG~~~~--- 179 (289)
.-|++ ||.+.++ +..+.+++....+.. . +.+.+.| ..|..|...++. +..+.+|||...-
T Consensus 39 ~~YlIHGGrTPNN-ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP-~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~ 116 (337)
T PF03089_consen 39 EQYLIHGGRTPNN-ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVP-EARYGHTINVVHSRGKTACVLFGGRSYMPPG 116 (337)
T ss_pred eeEEecCCcCCCc-ccccceEEEEeecCCCCceeEEEEecceecCCCC-cccccceEEEEEECCcEEEEEECCcccCCcc
Confidence 35555 6766655 567777776544322 1 2346778 577788888776 3357888996421
Q ss_pred ----------CcccCceEEEEcCCCceE--eCCCCCccccccceEEECCEEEEEeeecCCCCC
Q 048803 180 ----------KNALKSAMAYDVARDEWA--SLPDMSRERDECKAVFHCGKLLVIGGYSTNAQG 230 (289)
Q Consensus 180 ----------~~~~~~~~~yd~~~~~W~--~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~ 230 (289)
-.+...++..|++.+-.+ .++.+..+...|.+..-++.+|++||..-..+-
T Consensus 117 qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~ 179 (337)
T PF03089_consen 117 QRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDS 179 (337)
T ss_pred ccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCC
Confidence 113446777888877554 456666777778888889999999998765433
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.47 E-value=0.034 Score=48.33 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=87.0
Q ss_pred eeEEEEECCCCC--eEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCCCCC-
Q 048803 81 YRITVLELGSGE--WSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADMPGG- 155 (289)
Q Consensus 81 ~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~- 155 (289)
..++++|..+++ |+.- ++.+.. .+.+..++.+|+..+ ...++.+|+.+++ |+.-...+..
T Consensus 130 g~l~ald~~tG~~~W~~~--~~~~~~-----ssP~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTK--VAGEAL-----SRPVVSDGLVLVHTS--------NGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CEEEEEECCCCCCccccc--CCCcee-----cCCEEECCEEEEECC--------CCEEEEEEccCCCEeeeecCCCCccc
Confidence 478899998765 7532 222211 133456788887532 3458899998876 8764332210
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC--ceEeCCCCCcc-----c---cccceEEECCEEEEEeeec
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD--EWASLPDMSRE-----R---DECKAVFHCGKLLVIGGYS 225 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~-----~---~~~~~~~~~~~l~~~gG~~ 225 (289)
.+...+-++ .++.+|+..+. ..+..+|++++ .|+.-...+.. + ...+.++.++.+|+.+..
T Consensus 195 ~~~~~sP~v-~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~- 265 (394)
T PRK11138 195 LRGESAPAT-AFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN- 265 (394)
T ss_pred ccCCCCCEE-ECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC-
Confidence 111111222 36777765331 24788888876 48743211111 0 123445678999986521
Q ss_pred CCCCCcccceEEEEECCCCc--eeecccccccCCCCCCceeeeeCCeEEEEeC
Q 048803 226 TNAQGRFERHAEAFDAAAQQ--WGPVEEDFMETATCPRSCAGVDSNDLYMCRE 276 (289)
Q Consensus 226 ~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG 276 (289)
..+.++|+.+++ |+.-... .. .++..+++||+...
T Consensus 266 --------g~l~ald~~tG~~~W~~~~~~-------~~-~~~~~~~~vy~~~~ 302 (394)
T PRK11138 266 --------GNLVALDLRSGQIVWKREYGS-------VN-DFAVDGGRIYLVDQ 302 (394)
T ss_pred --------CeEEEEECCCCCEEEeecCCC-------cc-CcEEECCEEEEEcC
Confidence 268999998874 8763210 11 13445788888764
No 62
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.38 E-value=0.00014 Score=58.74 Aligned_cols=43 Identities=28% Similarity=0.529 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHhhcCC-----hhhHHHHHHHhhhHHhhhcChhHHHH
Q 048803 4 IPDLPNEIALECLSRVS-----YKQFATISSVCKGWKSEISRPEFRRN 46 (289)
Q Consensus 4 ~~~Lp~dl~~~il~~lp-----~~~l~~~~~v~k~W~~l~~~~~~~~~ 46 (289)
|..|||||+.+||.++- ..+|.++++|||.|......|+++..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 56899999999999865 49999999999999999999998766
No 63
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.38 E-value=0.079 Score=46.05 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=89.1
Q ss_pred eeEEEEECCCCC--eEeCCCCCCCCC----CCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCC
Q 048803 81 YRITVLELGSGE--WSELPPIPGFPD----GLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADM 152 (289)
Q Consensus 81 ~~~~~~d~~~~~--W~~~~~~~~~~~----~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~ 152 (289)
..++++|..+++ |+.-..-..... ........+..+++||+.+. ...++.+|..|++ |+.-.+-
T Consensus 79 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 79 GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--------KGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC--------CCEEEEEECCCCCCcccccCCC
Confidence 478899988766 763221100000 00011235667888887432 3458889998875 8653221
Q ss_pred CCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc--eEeCCCCCc--cccccceEEECCEEEEEeeecCCC
Q 048803 153 PGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE--WASLPDMSR--ERDECKAVFHCGKLLVIGGYSTNA 228 (289)
Q Consensus 153 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--~~~~~~~~~~~~~l~~~gG~~~~~ 228 (289)
.. .+..++.++.+|+..+. ..++.+|+++++ |+.-...+. .+...+.++.++.+|+..+.
T Consensus 151 --~~---~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---- 214 (394)
T PRK11138 151 --EA---LSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN---- 214 (394)
T ss_pred --ce---ecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC----
Confidence 11 12222247888875331 258999999875 886433221 12233445667777765432
Q ss_pred CCcccceEEEEECCCC--ceeecccccccCC-----CCCCceeeeeCCeEEEEeC
Q 048803 229 QGRFERHAEAFDAAAQ--QWGPVEEDFMETA-----TCPRSCAGVDSNDLYMCRE 276 (289)
Q Consensus 229 ~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~-----~~~~~~~~~~~~~ly~~GG 276 (289)
..+..+|++++ .|+.-...+.... .......++.++.+|+.+.
T Consensus 215 -----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~ 264 (394)
T PRK11138 215 -----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY 264 (394)
T ss_pred -----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc
Confidence 25788898876 4875321110000 0011223445888888763
No 64
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.35 E-value=0.0028 Score=50.61 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCcccCceEEEEcCCCc--------e---EeCCCCCccccccceEEE--CCE--EEEEeeecCCCCCc---
Q 048803 170 VYVAGGHDEDKNALKSAMAYDVARDE--------W---ASLPDMSRERDECKAVFH--CGK--LLVIGGYSTNAQGR--- 231 (289)
Q Consensus 170 iyv~GG~~~~~~~~~~~~~yd~~~~~--------W---~~~~~~~~~~~~~~~~~~--~~~--l~~~gG~~~~~~~~--- 231 (289)
..+.||...+.+..+.+++....+.. . +-+.+.|.+|++|++-++ .|| ..+|||+.....++
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 34457777665666666666555432 1 123578999999998665 343 77789876543221
Q ss_pred --------ccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCcee
Q 048803 232 --------FERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDV 279 (289)
Q Consensus 232 --------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~ 279 (289)
....|+..|++-+..+.-..+-+..-..+ +...+-++.+|++||+..
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF-Hvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF-HVSLARNDCVYILGGHSL 175 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcCCeEE-EEEEecCceEEEEccEEc
Confidence 22357778888887765432112222222 344456999999999754
No 65
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.026 Score=48.10 Aligned_cols=167 Identities=10% Similarity=0.017 Sum_probs=92.7
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCE-EEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCC-Ccc
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPE-LVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGG-RRM 158 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~ 158 (289)
..++..|-..+. .+..+.....+. ..+...-+|. ..+++|. ..-++.||+.+.+-+++.++-.. .+.
T Consensus 237 lrifqvDGk~N~--~lqS~~l~~fPi--~~a~f~p~G~~~i~~s~r-------rky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 237 LRIFQVDGKVNP--KLQSIHLEKFPI--QKAEFAPNGHSVIFTSGR-------RKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred EEEEEecCccCh--hheeeeeccCcc--ceeeecCCCceEEEeccc-------ceEEEEeeccccccccccCCCCcccch
Confidence 456666666654 444433322221 2233333444 7777764 34478999999998888665422 122
Q ss_pred ceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEE
Q 048803 159 LFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238 (289)
Q Consensus 159 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~ 238 (289)
.....+..++.+.++.|..+. +......|++|..--.++......+...-+.+|++.||.. .|++
T Consensus 306 ~e~FeVShd~~fia~~G~~G~------I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G---------eV~v 370 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGH------IHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG---------EVYV 370 (514)
T ss_pred hheeEecCCCCeEEEcccCce------EEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc---------eEEE
Confidence 333444456777777776543 7888888888864333332222222223345677777653 5899
Q ss_pred EECCCCc----eeecccccccCCCCCCceeeeeCCeEEEEeCcee
Q 048803 239 FDAAAQQ----WGPVEEDFMETATCPRSCAGVDSNDLYMCREGDV 279 (289)
Q Consensus 239 yd~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~ 279 (289)
+|...+. |..-.. .+..+.+...++.++.+|-..+
T Consensus 371 ~nl~~~~~~~rf~D~G~------v~gts~~~S~ng~ylA~GS~~G 409 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGS------VHGTSLCISLNGSYLATGSDSG 409 (514)
T ss_pred EecCCcceEEEEeecCc------cceeeeeecCCCceEEeccCcc
Confidence 9998874 322222 1222223356888666665443
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.95 E-value=0.21 Score=43.02 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=81.7
Q ss_pred eeEEEEECCCCC--eEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCCCCC-
Q 048803 81 YRITVLELGSGE--WSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADMPGG- 155 (289)
Q Consensus 81 ~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~- 155 (289)
..++++|+.+++ |+.- ++.... ...+..++.+|+..+ ...++.+|+.+++ |+.-...+..
T Consensus 115 g~l~ald~~tG~~~W~~~--~~~~~~-----~~p~v~~~~v~v~~~--------~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAK--LSSEVL-----SPPLVANGLVVVRTN--------DGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred CEEEEEECCCCcEeeeec--cCceee-----cCCEEECCEEEEECC--------CCeEEEEEcCCCceeeEEccCCCcee
Confidence 467888887665 6533 222111 123445677776432 3458889998775 7654322210
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC--ceEeCCCCCccc--------cccceEEECCEEEEEeeec
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD--EWASLPDMSRER--------DECKAVFHCGKLLVIGGYS 225 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~--------~~~~~~~~~~~l~~~gG~~ 225 (289)
.+......+ .++.+|+ |..+ ..+..+|++++ .|+.-...+... ...+.++.++.+|+....
T Consensus 180 ~~~~~sp~~-~~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~- 250 (377)
T TIGR03300 180 LRGSASPVI-ADGGVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ- 250 (377)
T ss_pred ecCCCCCEE-ECCEEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-
Confidence 111111222 3665554 3221 24889999876 486432211111 122344568888886532
Q ss_pred CCCCCcccceEEEEECCCCc--eeecccccccCCCCCCceeeeeCCeEEEEeC
Q 048803 226 TNAQGRFERHAEAFDAAAQQ--WGPVEEDFMETATCPRSCAGVDSNDLYMCRE 276 (289)
Q Consensus 226 ~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG 276 (289)
..+.+||+++++ |..-.. .....+..+++||+...
T Consensus 251 --------g~l~a~d~~tG~~~W~~~~~--------~~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 251 --------GRVAALDLRSGRVLWKRDAS--------SYQGPAVDDNRLYVTDA 287 (377)
T ss_pred --------CEEEEEECCCCcEEEeeccC--------CccCceEeCCEEEEECC
Confidence 358999998764 765311 01123345777887654
No 67
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.81 E-value=0.18 Score=40.11 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=87.5
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EE-eCCCCCCCC-
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WR-RGADMPGGR- 156 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~-~~~~~~~~~- 156 (289)
..++++|..+++-..-..++.+... .....++.||+... ...++.+|..+++ |+ .....+...
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~~~~~-----~~~~~~~~v~v~~~--------~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPGPISG-----APVVDGGRVYVGTS--------DGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSSCGGS-----GEEEETTEEEEEET--------TSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred CEEEEEECCCCCEEEEeeccccccc-----eeeecccccccccc--------eeeeEecccCCcceeeeecccccccccc
Confidence 6889999988773222222333222 24678899988752 2368899988876 88 343322122
Q ss_pred ccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc--eEeCCCCCccc--------cccceEEECCEEEEEeeecC
Q 048803 157 RMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE--WASLPDMSRER--------DECKAVFHCGKLLVIGGYST 226 (289)
Q Consensus 157 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~--------~~~~~~~~~~~l~~~gG~~~ 226 (289)
.......+ .++.+|+... ...+..+|+++++ |..-...+... .....+..++.+|+..+..
T Consensus 113 ~~~~~~~~-~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g- 183 (238)
T PF13360_consen 113 RSSSSPAV-DGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG- 183 (238)
T ss_dssp B--SEEEE-ETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-
T ss_pred ccccCceE-ecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-
Confidence 11222332 3677776643 2358999999874 87533333211 1123333467888876432
Q ss_pred CCCCcccceEEEEECCCCc--eeecccccccCCCCCCceeeeeCCeEEEEe
Q 048803 227 NAQGRFERHAEAFDAAAQQ--WGPVEEDFMETATCPRSCAGVDSNDLYMCR 275 (289)
Q Consensus 227 ~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~ly~~G 275 (289)
.+..+|..+++ |+.... .........++.||+..
T Consensus 184 --------~~~~~d~~tg~~~w~~~~~-------~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 184 --------RVVAVDLATGEKLWSKPIS-------GIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp --------SEEEEETTTTEEEEEECSS--------ECECEECCCTEEEEEE
T ss_pred --------eEEEEECCCCCEEEEecCC-------CccCCceeeCCEEEEEe
Confidence 24556999987 844411 11111344577777776
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.43 E-value=0.058 Score=44.24 Aligned_cols=103 Identities=16% Similarity=0.307 Sum_probs=59.2
Q ss_pred cCceEEEEcCCCceEeCCCCCccccccceEEE-CCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCC
Q 048803 183 LKSAMAYDVARDEWASLPDMSRERDECKAVFH-CGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPR 261 (289)
Q Consensus 183 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 261 (289)
...+..||..+.+|..+..--.+. -..+... +++|++.|-...... ....+..||.++.+|..+..........+.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~--~~~~la~yd~~~~~w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGT--NSSNLATYDFKNQTWSSLGGGSSNSIPGPV 91 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCC--CceeEEEEecCCCeeeecCCcccccCCCcE
Confidence 456899999999999776442221 1122223 678888876543321 234689999999999998773210111121
Q ss_pred ceeee---eCCeEEEEeC-----ceeecccCCccc
Q 048803 262 SCAGV---DSNDLYMCRE-----GDVMALRCNTWQ 288 (289)
Q Consensus 262 ~~~~~---~~~~ly~~GG-----~~~~~~~~~~w~ 288 (289)
..+.. -.+++++.|. .-...|+...|+
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 12221 3345776554 223555667776
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.38 E-value=0.37 Score=38.32 Aligned_cols=165 Identities=15% Similarity=0.200 Sum_probs=90.4
Q ss_pred eeEEEEECCCCC--eEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCCCCCC
Q 048803 81 YRITVLELGSGE--WSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADMPGGR 156 (289)
Q Consensus 81 ~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~ 156 (289)
..+.++|+.+++ |+.- +....... ....+..++.+|+.. ....++.+|..+++ |+.-.+-+ .
T Consensus 3 g~l~~~d~~tG~~~W~~~--~~~~~~~~--~~~~~~~~~~v~~~~--------~~~~l~~~d~~tG~~~W~~~~~~~--~ 68 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYD--LGPGIGGP--VATAVPDGGRVYVAS--------GDGNLYALDAKTGKVLWRFDLPGP--I 68 (238)
T ss_dssp SEEEEEETTTTEEEEEEE--CSSSCSSE--EETEEEETTEEEEEE--------TTSEEEEEETTTSEEEEEEECSSC--G
T ss_pred CEEEEEECCCCCEEEEEE--CCCCCCCc--cceEEEeCCEEEEEc--------CCCEEEEEECCCCCEEEEeecccc--c
Confidence 367788987766 6542 21111111 011344788888873 25678999998887 76544222 1
Q ss_pred ccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC--ceE-eCCCCCc--cccccceEEECCEEEEEeeecCCCCCc
Q 048803 157 RMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD--EWA-SLPDMSR--ERDECKAVFHCGKLLVIGGYSTNAQGR 231 (289)
Q Consensus 157 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~-~~~~~~~--~~~~~~~~~~~~~l~~~gG~~~~~~~~ 231 (289)
... .. ..++.+|+.... ..+..+|.+++ .|+ .....+. .......++.++.+|+....
T Consensus 69 ~~~--~~-~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 131 (238)
T PF13360_consen 69 SGA--PV-VDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------- 131 (238)
T ss_dssp GSG--EE-EETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-------
T ss_pred cce--ee-ecccccccccce-------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc-------
Confidence 111 22 248889887521 25899998877 498 4433221 22233344456777666531
Q ss_pred ccceEEEEECCCCc--eeecccccccCCC-----CCCceeeeeCCeEEEEeCce
Q 048803 232 FERHAEAFDAAAQQ--WGPVEEDFMETAT-----CPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 232 ~~~~v~~yd~~~~~--W~~~~~~~~~~~~-----~~~~~~~~~~~~ly~~GG~~ 278 (289)
..+.++|+++++ |+.-...+..... .....++..++.+|+..+..
T Consensus 132 --g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 132 --GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp --SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred --CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 368999998774 7664432110000 01112334467888888655
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.33 E-value=0.6 Score=40.24 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=73.6
Q ss_pred eeEEEEECCCCC--eEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCCCCCC
Q 048803 81 YRITVLELGSGE--WSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADMPGGR 156 (289)
Q Consensus 81 ~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~ 156 (289)
..++++|+.+++ |+.- ++..... +.+..++.+|+.+. ...++.+|..+++ |+.-..- ..
T Consensus 75 g~v~a~d~~tG~~~W~~~--~~~~~~~-----~p~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVD--LDERLSG-----GVGADGGLVFVGTE--------KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CeEEEEEccCCcEeeeec--CCCCccc-----ceEEcCCEEEEEcC--------CCEEEEEECCCCcEeeeeccCc--ee
Confidence 478999988766 6532 2222111 34455677776422 3468889988775 8643221 11
Q ss_pred ccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC--ceEeCCCCCc--cccccceEEECCEEEEEeeecCCCCCcc
Q 048803 157 RMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD--EWASLPDMSR--ERDECKAVFHCGKLLVIGGYSTNAQGRF 232 (289)
Q Consensus 157 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~--~~~~~~~~~~~~~l~~~gG~~~~~~~~~ 232 (289)
.+...+.++.+|+..+ ...+..+|++++ .|+.-...+. .+...+.+..++.+|+ +..+
T Consensus 138 ---~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~------- 199 (377)
T TIGR03300 138 ---LSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG------- 199 (377)
T ss_pred ---ecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC-------
Confidence 1122223777777532 124899999876 4875432221 1223444566776553 3221
Q ss_pred cceEEEEECCCC--ceee
Q 048803 233 ERHAEAFDAAAQ--QWGP 248 (289)
Q Consensus 233 ~~~v~~yd~~~~--~W~~ 248 (289)
..+..+|++++ .|+.
T Consensus 200 -g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 200 -GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred -CEEEEEEccCCCEeeee
Confidence 25889998776 4764
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.79 E-value=1.4 Score=39.86 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=38.6
Q ss_pred CCCCCChHHHHHHHhhcCChhhHHHHHHHhhhHHhhhcChhHH
Q 048803 2 DLIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFR 44 (289)
Q Consensus 2 ~~~~~Lp~dl~~~il~~lp~~~l~~~~~v~k~W~~l~~~~~~~ 44 (289)
+.|..||-|+..-||..|+.+++.+.+.||+.|+.++......
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 4578999999999999999999999999999999999876543
No 72
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.76 E-value=0.14 Score=36.68 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=56.0
Q ss_pred cCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCC---CccccccceEEECCEEEEEeeecCCCCCcccceEEEE-EC
Q 048803 166 GDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDM---SRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAF-DA 241 (289)
Q Consensus 166 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~y-d~ 241 (289)
.+|-+|...... ......+.+||.++++|+.++.+ .........+.++|+|.++.-...... ..-.+++. |.
T Consensus 4 inGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~--~~~~iWvLeD~ 79 (129)
T PF08268_consen 4 INGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEP--DSIDIWVLEDY 79 (129)
T ss_pred ECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCc--ceEEEEEeecc
Confidence 489898887652 12346799999999999987553 234456677889999999865443210 11257777 56
Q ss_pred CCCceeeccc
Q 048803 242 AAQQWGPVEE 251 (289)
Q Consensus 242 ~~~~W~~~~~ 251 (289)
..++|.+...
T Consensus 80 ~k~~Wsk~~~ 89 (129)
T PF08268_consen 80 EKQEWSKKHI 89 (129)
T ss_pred ccceEEEEEE
Confidence 6789997754
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.59 E-value=0.38 Score=38.73 Aligned_cols=174 Identities=17% Similarity=0.177 Sum_probs=87.2
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEE--eCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCC---C
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSA--VGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPG---G 155 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~---~ 155 (289)
..++.+|+.+++-.... .+.+ . .++. -++.+|+... ....++|+.+++++.+...+. .
T Consensus 22 ~~i~~~~~~~~~~~~~~-~~~~-----~--G~~~~~~~g~l~v~~~---------~~~~~~d~~~g~~~~~~~~~~~~~~ 84 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVID-LPGP-----N--GMAFDRPDGRLYVADS---------GGIAVVDPDTGKVTVLADLPDGGVP 84 (246)
T ss_dssp TEEEEEETTTTEEEEEE-SSSE-----E--EEEEECTTSEEEEEET---------TCEEEEETTTTEEEEEEEEETTCSC
T ss_pred CEEEEEECCCCeEEEEe-cCCC-----c--eEEEEccCCEEEEEEc---------CceEEEecCCCcEEEEeeccCCCcc
Confidence 57889999988764432 2221 1 3333 3688888743 334667999999987755421 1
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCccc--CceEEEEcCCCceEeCC-CCCccccccceEEECC-EEEEEeeecCCCCCc
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNAL--KSAMAYDVARDEWASLP-DMSRERDECKAVFHCG-KLLVIGGYSTNAQGR 231 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~-~l~~~gG~~~~~~~~ 231 (289)
.......++.-+|.+|+..-........ ..++.+++. ++...+. .+..+ ..-+..-++ .||+.-..
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p--NGi~~s~dg~~lyv~ds~------- 154 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP--NGIAFSPDGKTLYVADSF------- 154 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE--EEEEEETTSSEEEEEETT-------
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc--cceEECCcchheeecccc-------
Confidence 2223345554588898874322211111 458889888 5554432 22222 111222344 56765322
Q ss_pred ccceEEEEECCCCc--eeeccccc-ccCCC-CCCceeeeeCCeEEEE--eCceeecc
Q 048803 232 FERHAEAFDAAAQQ--WGPVEEDF-METAT-CPRSCAGVDSNDLYMC--REGDVMAL 282 (289)
Q Consensus 232 ~~~~v~~yd~~~~~--W~~~~~~~-~~~~~-~~~~~~~~~~~~ly~~--GG~~~~~~ 282 (289)
.+.|+.|++.... +....... .+... .+-..++--+|+||+. ++.....+
T Consensus 155 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 155 -NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp -TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred -cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 2468999886433 43222110 11111 1211223357889988 44444333
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.20 E-value=1.3 Score=35.60 Aligned_cols=172 Identities=19% Similarity=0.106 Sum_probs=86.8
Q ss_pred eEEEEECCCCCeEeCCCCCCCC-CCCCceeEEEEeCCEEEEEeCcCCCC-cccccceEEEEccCCeEEeCCCCCCCCccc
Q 048803 82 RITVLELGSGEWSELPPIPGFP-DGLPLFCQLSAVGPELVVIGGLDLTT-WEASSSVFVFNIISATWRRGADMPGGRRML 159 (289)
Q Consensus 82 ~~~~~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 159 (289)
...++|+.+++++.+...+... ......-..+.-++.||+..-..... ......++++++. ++.+.+..-. ...
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~---~~p 136 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL---GFP 136 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE---SSE
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc---ccc
Confidence 4456699999988776653222 11111112333467888864322111 0111679999998 6665543221 112
Q ss_pred eeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCc--eEe---CCCCCcccccc-ceEE-ECCEEEEEeeecCCCCCc
Q 048803 160 FGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDE--WAS---LPDMSRERDEC-KAVF-HCGKLLVIGGYSTNAQGR 231 (289)
Q Consensus 160 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~---~~~~~~~~~~~-~~~~-~~~~l~~~gG~~~~~~~~ 231 (289)
.+.+...++ .+|+.-. ....++.|++.... +.. +..++.....+ ++++ -+|+||+..-.
T Consensus 137 NGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------- 203 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------- 203 (246)
T ss_dssp EEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-------
T ss_pred cceEECCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-------
Confidence 455554555 5777522 23458999886432 332 22222221112 2222 37899997432
Q ss_pred ccceEEEEECCCCceeecccccccCCCCCCceeee--eCCeEEEEe
Q 048803 232 FERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGV--DSNDLYMCR 275 (289)
Q Consensus 232 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~ly~~G 275 (289)
.+.|.+||++...-..+.. |. .++..+++. -.+.|||..
T Consensus 204 -~~~I~~~~p~G~~~~~i~~---p~-~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 204 -GGRIVVFDPDGKLLREIEL---PV-PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -TTEEEEEETTSCEEEEEE----SS-SSEEEEEEESTTSSEEEEEE
T ss_pred -CCEEEEECCCccEEEEEcC---CC-CCEEEEEEECCCCCEEEEEe
Confidence 1479999999655555553 21 233323331 236688764
No 75
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.11 E-value=0.43 Score=38.55 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=69.6
Q ss_pred EEEE-eCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEE
Q 048803 111 QLSA-VGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAY 189 (289)
Q Consensus 111 ~~~~-~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 189 (289)
.+.. .++.+|.--|..+ .+.+.++|+.|++-....+++ .....-+.+. .+++||..- -....+.+|
T Consensus 49 GL~~~~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~-~~d~l~qLT------Wk~~~~f~y 115 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLP-PRYFGEGITI-LGDKLYQLT------WKEGTGFVY 115 (264)
T ss_dssp EEEEEETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-T-TT--EEEEEE-ETTEEEEEE------SSSSEEEEE
T ss_pred cEEecCCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECC-ccccceeEEE-ECCEEEEEE------ecCCeEEEE
Confidence 3444 5778888777643 467889999999877667777 3433445565 499999872 123468999
Q ss_pred EcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCC
Q 048803 190 DVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 190 d~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
|+++ .+.+...+.+..+-+.+.-+..|++.-|. +.++..||++
T Consensus 116 d~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS---------~~L~~~dP~~ 158 (264)
T PF05096_consen 116 DPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGS---------SRLYFLDPET 158 (264)
T ss_dssp ETTT--TEEEEEEE-SSS--EEEECSSCEEEE-SS---------SEEEEE-TTT
T ss_pred cccc--ceEEEEEecCCcceEEEcCCCEEEEECCc---------cceEEECCcc
Confidence 9875 45555555556677777777778887764 2577778765
No 76
>PRK13684 Ycf48-like protein; Provisional
Probab=95.09 E-value=1.5 Score=37.23 Aligned_cols=132 Identities=9% Similarity=0.144 Sum_probs=62.4
Q ss_pred eEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEE-EEcCCCceEeCCCCCccccccceEE-
Q 048803 136 VFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMA-YDVARDEWASLPDMSRERDECKAVF- 213 (289)
Q Consensus 136 ~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-yd~~~~~W~~~~~~~~~~~~~~~~~- 213 (289)
+++=+-.-.+|+.+.... .-..+.....-++.++++|.. .. ++. .|....+|+.+.... .+.-..++.
T Consensus 154 i~~S~DgG~tW~~~~~~~--~g~~~~i~~~~~g~~v~~g~~-G~------i~~s~~~gg~tW~~~~~~~-~~~l~~i~~~ 223 (334)
T PRK13684 154 IYRTTDGGKNWEALVEDA--AGVVRNLRRSPDGKYVAVSSR-GN------FYSTWEPGQTAWTPHQRNS-SRRLQSMGFQ 223 (334)
T ss_pred EEEECCCCCCceeCcCCC--cceEEEEEECCCCeEEEEeCC-ce------EEEEcCCCCCeEEEeeCCC-cccceeeeEc
Confidence 444333456898876433 222334444334444444332 21 222 234446799875432 222233333
Q ss_pred ECCEEEEEeeecCCCCCcccceEEEEE--CCCCceeecccccccCCCCCCceee-eeCCeEEEEeCceeecc--cC-Ccc
Q 048803 214 HCGKLLVIGGYSTNAQGRFERHAEAFD--AAAQQWGPVEEDFMETATCPRSCAG-VDSNDLYMCREGDVMAL--RC-NTW 287 (289)
Q Consensus 214 ~~~~l~~~gG~~~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~ly~~GG~~~~~~--~~-~~w 287 (289)
-+++++++|.. ....+. -.-.+|+.+...... .......++ ..++.++++|....... +. .+|
T Consensus 224 ~~g~~~~vg~~----------G~~~~~s~d~G~sW~~~~~~~~~-~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW 292 (334)
T PRK13684 224 PDGNLWMLARG----------GQIRFNDPDDLESWSKPIIPEIT-NGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTW 292 (334)
T ss_pred CCCCEEEEecC----------CEEEEccCCCCCccccccCCccc-cccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCC
Confidence 46788888643 123342 233589986542111 111112222 34678888876543333 22 577
Q ss_pred c
Q 048803 288 Q 288 (289)
Q Consensus 288 ~ 288 (289)
+
T Consensus 293 ~ 293 (334)
T PRK13684 293 E 293 (334)
T ss_pred e
Confidence 5
No 77
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.07 E-value=1.6 Score=35.81 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=84.8
Q ss_pred CCCCCCCceeEEEEeCCEEEEEeCcC-------C--C--C----cccccceEEEEccCCe----EEeCCCCCCCCcccee
Q 048803 101 GFPDGLPLFCQLSAVGPELVVIGGLD-------L--T--T----WEASSSVFVFNIISAT----WRRGADMPGGRRMLFG 161 (289)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~lyv~GG~~-------~--~--~----~~~~~~~~~yd~~t~~----W~~~~~~~~~~~~~~~ 161 (289)
.|+.+..++.++..+++.|| |||+- . . . ..-.+.++.||..+++ |++--.-+ ....+
T Consensus 31 ~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~---~~WaG 106 (339)
T PF09910_consen 31 PPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK---TKWAG 106 (339)
T ss_pred CCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc---ccccc
Confidence 45555566678888888888 57761 1 1 0 1235678999988887 54432222 11221
Q ss_pred EE--Ee---cCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceE
Q 048803 162 CA--SD---GDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHA 236 (289)
Q Consensus 162 ~~--~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v 236 (289)
-+ .+ .++++++.=+.. + ..--++..|.+++.=+.+..-|... ++.+.|...|-+ +.... -...+
T Consensus 107 EVSdIlYdP~~D~LLlAR~DG-h--~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i---~~~~~--g~~~i 175 (339)
T PF09910_consen 107 EVSDILYDPYEDRLLLARADG-H--ANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI---NNFHK--GVSGI 175 (339)
T ss_pred chhheeeCCCcCEEEEEecCC-c--ceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec---ccccc--CCceE
Confidence 11 11 256676652211 1 1224788888888777665555442 333444444433 22111 13579
Q ss_pred EEEECCCCce--eeccccc----ccCCCCCCceeeeeCCeEEEE
Q 048803 237 EAFDAAAQQW--GPVEEDF----METATCPRSCAGVDSNDLYMC 274 (289)
Q Consensus 237 ~~yd~~~~~W--~~~~~~~----~~~~~~~~~~~~~~~~~ly~~ 274 (289)
++||..+++| +...... -+..++....++...+++|.+
T Consensus 176 ~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 176 HCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 9999999999 3332110 111112222466677887776
No 78
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.79 E-value=0.53 Score=38.06 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=72.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEE
Q 048803 160 FGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAF 239 (289)
Q Consensus 160 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~y 239 (289)
.+.....+|.+|.--|..+. +.+..||+++++=....++|....+-+.+.++++||..-=.+ +...+|
T Consensus 48 QGL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~--------~~~f~y 115 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE--------GTGFVY 115 (264)
T ss_dssp EEEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS--------SEEEEE
T ss_pred ccEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC--------CeEEEE
Confidence 34444347899988776543 569999999998776677887777788889999999997443 367999
Q ss_pred ECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCceeecc
Q 048803 240 DAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDVMAL 282 (289)
Q Consensus 240 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~ 282 (289)
|+++ .+.+.....+ .-..+++.-++.|++..|.+.+..
T Consensus 116 d~~t--l~~~~~~~y~---~EGWGLt~dg~~Li~SDGS~~L~~ 153 (264)
T PF05096_consen 116 DPNT--LKKIGTFPYP---GEGWGLTSDGKRLIMSDGSSRLYF 153 (264)
T ss_dssp ETTT--TEEEEEEE-S---SS--EEEECSSCEEEE-SSSEEEE
T ss_pred cccc--ceEEEEEecC---CcceEEEcCCCEEEEECCccceEE
Confidence 9865 5555553222 355688888888999988766544
No 79
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.39 E-value=1.5 Score=35.55 Aligned_cols=120 Identities=11% Similarity=0.033 Sum_probs=69.0
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEE
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYD 190 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 190 (289)
.++.-++.+|+..- ..+.+-..|+.+..=+.++.............+.-.+++++. .-....+..||
T Consensus 194 i~atpdGsvwyasl-------agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wit------twg~g~l~rfd 260 (353)
T COG4257 194 ICATPDGSVWYASL-------AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWIT------TWGTGSLHRFD 260 (353)
T ss_pred eEECCCCcEEEEec-------cccceEEcccccCCcceecCCCcccccccccccCccCcEEEe------ccCCceeeEeC
Confidence 45556788887632 234566778888755555432210111111222225677776 11234689999
Q ss_pred cCCCceEeCCCC-CccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeeccc
Q 048803 191 VARDEWASLPDM-SRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEE 251 (289)
Q Consensus 191 ~~~~~W~~~~~~-~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 251 (289)
|.+..|.+-+=+ ..+|....-+--.|++++.--- .+.|..||+++.+...+..
T Consensus 261 Ps~~sW~eypLPgs~arpys~rVD~~grVW~sea~--------agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 261 PSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD--------AGAIGRFDPETARFTVLPI 314 (353)
T ss_pred cccccceeeeCCCCCCCcceeeeccCCcEEeeccc--------cCceeecCcccceEEEecC
Confidence 999999866321 2334333223335677774321 2468999999999998875
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.35 E-value=0.86 Score=39.47 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=72.1
Q ss_pred eeEEEEECCCCCeEe-CCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe-EEeCCCCCCCCcc
Q 048803 81 YRITVLELGSGEWSE-LPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT-WRRGADMPGGRRM 158 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~ 158 (289)
-.+.+|+..+..=.. ++....-. +......+|+|+.+|+. +..+.+||..+.. -+.+.... .|..
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v-----~s~~fR~DG~LlaaGD~-------sG~V~vfD~k~r~iLR~~~ah~-apv~ 114 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVV-----YSVDFRSDGRLLAAGDE-------SGHVKVFDMKSRVILRQLYAHQ-APVH 114 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccce-----eEEEeecCCeEEEccCC-------cCcEEEeccccHHHHHHHhhcc-Ccee
Confidence 567788887654222 22222111 12334456999999874 4568899954422 12222222 2322
Q ss_pred ceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCC---ccccccceEEECCEEEEEeeecCCCCCcccce
Q 048803 159 LFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMS---RERDECKAVFHCGKLLVIGGYSTNAQGRFERH 235 (289)
Q Consensus 159 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~ 235 (289)
..-... .++.+++.|+.+. .+..+|..+.. . ...+. ...........++.|++.||+++ .
T Consensus 115 ~~~f~~-~d~t~l~s~sDd~------v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg--------~ 177 (487)
T KOG0310|consen 115 VTKFSP-QDNTMLVSGSDDK------VVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDG--------K 177 (487)
T ss_pred EEEecc-cCCeEEEecCCCc------eEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCc--------e
Confidence 223333 4788888876443 24444555444 1 11111 11112223345788999999986 5
Q ss_pred EEEEECCCCc
Q 048803 236 AEAFDAAAQQ 245 (289)
Q Consensus 236 v~~yd~~~~~ 245 (289)
|-.||..+..
T Consensus 178 vrl~DtR~~~ 187 (487)
T KOG0310|consen 178 VRLWDTRSLT 187 (487)
T ss_pred EEEEEeccCC
Confidence 8889988774
No 81
>PRK13684 Ycf48-like protein; Provisional
Probab=94.11 E-value=3.2 Score=35.22 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=75.5
Q ss_pred CCCeEeCCC-CCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCC
Q 048803 90 SGEWSELPP-IPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDR 168 (289)
Q Consensus 90 ~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~ 168 (289)
-.+|+.... ++...... ..+...++..|++|. ...+++=+-.-.+|+++......+........+.++
T Consensus 75 G~tW~~~~~~~~~~~~~l---~~v~~~~~~~~~~G~--------~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~ 143 (334)
T PRK13684 75 GETWEERSLDLPEENFRL---ISISFKGDEGWIVGQ--------PSLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPG 143 (334)
T ss_pred CCCceECccCCcccccce---eeeEEcCCcEEEeCC--------CceEEEECCCCCCCeEccCCcCCCCCceEEEEECCC
Confidence 357987643 32222111 133334556666642 122333222234798875321111122333333345
Q ss_pred EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEE-EECCCCcee
Q 048803 169 TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEA-FDAAAQQWG 247 (289)
Q Consensus 169 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~-yd~~~~~W~ 247 (289)
.+++.|... .++.=+-.-.+|+.+...... .-..+....+..++..|..+ .++. .|....+|.
T Consensus 144 ~~~~~g~~G-------~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~tW~ 207 (334)
T PRK13684 144 TAEMATNVG-------AIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTAWT 207 (334)
T ss_pred cceeeeccc-------eEEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCeEE
Confidence 566654321 133323234689988654422 12223333333344433322 2332 345556899
Q ss_pred ecccccccCCCCCCceeeeeCCeEEEEeCceeecc---cC-Cccc
Q 048803 248 PVEEDFMETATCPRSCAGVDSNDLYMCREGDVMAL---RC-NTWQ 288 (289)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~---~~-~~w~ 288 (289)
.+... ............+++++++|.....-. ++ .+|+
T Consensus 208 ~~~~~---~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 208 PHQRN---SSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred EeeCC---CcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 88652 112222223335788888876544322 22 5776
No 82
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.92 E-value=4.2 Score=35.81 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=78.8
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..++++|..+++-+.+...+...... ...-.+.+|++....+ ...+++++|..+++.+.+..... . ..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~----~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~-~--~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAP----AWSPDGSKLAFVLSKD-----GNPEIYVMDLASRQLSRVTNHPA-I--DT 290 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCe----EECCCCCEEEEEEccC-----CCceEEEEECCCCCeEEcccCCC-C--cC
Confidence 46888899888877776544321111 1222234565443211 13578999999998887765331 1 11
Q ss_pred eEEEecC-CEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE-EECCE-EEEEeeecCCCCCcccceEE
Q 048803 161 GCASDGD-RTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV-FHCGK-LLVIGGYSTNAQGRFERHAE 237 (289)
Q Consensus 161 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~-l~~~gG~~~~~~~~~~~~v~ 237 (289)
.....-+ ..|++..... ....++.+|+.+++++.+.... ....... .-+|+ |++.....+ ...++
T Consensus 291 ~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~------~~~l~ 358 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQDG------NFHVA 358 (430)
T ss_pred CeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccCC------ceEEE
Confidence 1222224 4565553221 1246889999888887664211 1111112 22444 444432211 12588
Q ss_pred EEECCCCceeeccc
Q 048803 238 AFDAAAQQWGPVEE 251 (289)
Q Consensus 238 ~yd~~~~~W~~~~~ 251 (289)
.+|+.+++.+.+..
T Consensus 359 ~~dl~tg~~~~lt~ 372 (430)
T PRK00178 359 AQDLQRGSVRILTD 372 (430)
T ss_pred EEECCCCCEEEccC
Confidence 99999988877754
No 83
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.72 E-value=4.7 Score=35.79 Aligned_cols=149 Identities=11% Similarity=0.125 Sum_probs=80.1
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..++++|..+++-+.+...+..... ....-.+..|++....+ ...+++++|..+++.+.+..... .. .
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~----~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~~~~lt~~~~-~~--~ 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGA----PRFSPDGKKLALVLSKD-----GQPEIYVVDIATKALTRITRHRA-ID--T 309 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCC----eeECCCCCEEEEEEeCC-----CCeEEEEEECCCCCeEECccCCC-Cc--c
Confidence 4688889888876666654432211 12222344566554322 23579999999998887765331 11 1
Q ss_pred eEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEE
Q 048803 161 GCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAF 239 (289)
Q Consensus 161 ~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~y 239 (289)
..+..-++ .|++...... ...++.+|+.+++++.+.. ...........-+|+.+++.+.... ...++.+
T Consensus 310 ~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g-----~~~I~~~ 379 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNG-----KFNIARQ 379 (448)
T ss_pred ceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCC-----ceEEEEE
Confidence 12221244 4555432221 2468999999988877631 1111111122235544444333221 1268889
Q ss_pred ECCCCceeeccc
Q 048803 240 DAAAQQWGPVEE 251 (289)
Q Consensus 240 d~~~~~W~~~~~ 251 (289)
|+.+++...+..
T Consensus 380 dl~~g~~~~lt~ 391 (448)
T PRK04792 380 DLETGAMQVLTS 391 (448)
T ss_pred ECCCCCeEEccC
Confidence 999988777654
No 84
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.53 E-value=3.8 Score=37.23 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=68.3
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCCCCCCc-------cceeEEEecCCEEEEEcCCCCCCc
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADMPGGRR-------MLFGCASDGDRTVYVAGGHDEDKN 181 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~-------~~~~~~~~~~~~iyv~GG~~~~~~ 181 (289)
+-++.++.||+... ...++.+|..|++ |+.-...+.... ...+.+. .+++||+... +
T Consensus 64 tPvv~~g~vyv~s~--------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~-d---- 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTS--------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTL-D---- 129 (527)
T ss_pred CCEEECCEEEEECC--------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-ECCEEEEEcC-C----
Confidence 34567899998643 3458888988875 875443321110 0112232 4788887422 1
Q ss_pred ccCceEEEEcCCCc--eEeCC-CCCcc-ccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCc--eeecc
Q 048803 182 ALKSAMAYDVARDE--WASLP-DMSRE-RDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQ--WGPVE 250 (289)
Q Consensus 182 ~~~~~~~yd~~~~~--W~~~~-~~~~~-~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~--W~~~~ 250 (289)
..+.++|.+|++ |+.-. .+... ......++.+++||+-...... .....+.+||.++++ |+.-.
T Consensus 130 --g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~---~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 130 --ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF---GVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred --CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeeccccc---CCCcEEEEEECCCCceeEeccC
Confidence 248999999874 87432 22211 1223446678888775322110 023478999998874 76443
No 85
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.08 E-value=3.7 Score=33.54 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=51.6
Q ss_pred EEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCce
Q 048803 118 ELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEW 196 (289)
Q Consensus 118 ~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W 196 (289)
.+|+.++. -..+.+||+.+++-...-.....+ .+.+..-++ .+|+.++.+ ..+..||..+.+.
T Consensus 2 ~~~~s~~~-------d~~v~~~d~~t~~~~~~~~~~~~~---~~l~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~ 65 (300)
T TIGR03866 2 KAYVSNEK-------DNTISVIDTATLEVTRTFPVGQRP---RGITLSKDGKLLYVCASDS------DTIQVIDLATGEV 65 (300)
T ss_pred cEEEEecC-------CCEEEEEECCCCceEEEEECCCCC---CceEECCCCCEEEEEECCC------CeEEEEECCCCcE
Confidence 46666553 246788888777643222222112 223332344 567776532 2488899988765
Q ss_pred Ee-CCCCCccccccceEE-ECC-EEEEEeeecCCCCCcccceEEEEECCCCc
Q 048803 197 AS-LPDMSRERDECKAVF-HCG-KLLVIGGYSTNAQGRFERHAEAFDAAAQQ 245 (289)
Q Consensus 197 ~~-~~~~~~~~~~~~~~~-~~~-~l~~~gG~~~~~~~~~~~~v~~yd~~~~~ 245 (289)
.. ++....+ ...+. -++ .+|+.++.+ +.+..||+.+.+
T Consensus 66 ~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~ 106 (300)
T TIGR03866 66 IGTLPSGPDP---ELFALHPNGKILYIANEDD--------NLVTVIDIETRK 106 (300)
T ss_pred EEeccCCCCc---cEEEECCCCCEEEEEcCCC--------CeEEEEECCCCe
Confidence 43 2211111 12222 234 465554322 258889987753
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.69 E-value=5.2 Score=34.09 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=85.5
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEE--EccCCeEEeCCCCCCCCcc
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVF--NIISATWRRGADMPGGRRM 158 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~y--d~~t~~W~~~~~~~~~~~~ 158 (289)
-..+.||..++++..+......... .+.+...-++.||++..... ....+..| +..+++.+.+...+.....
T Consensus 15 I~~~~~d~~~g~l~~~~~~~~~~~P--s~l~~~~~~~~LY~~~e~~~----~~g~v~~~~i~~~~g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVAEGENP--SWLAVSPDGRRLYVVNEGSG----DSGGVSSYRIDPDTGTLTLLNSVPSGGSS 88 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSE--CCEEE-TTSSEEEEEETTSS----TTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred EEEEEEcCCCCCceEeeeecCCCCC--ceEEEEeCCCEEEEEEcccc----CCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence 4566778899998766543221111 11123335678998865431 12334444 5555677766544322222
Q ss_pred ceeEEEec-CCEEEEEcCCCCCCcccCceEEEEcCCC-ceEeCC---------CC--Ccccc-ccceEEE-CC-EEEEEe
Q 048803 159 LFGCASDG-DRTVYVAGGHDEDKNALKSAMAYDVARD-EWASLP---------DM--SRERD-ECKAVFH-CG-KLLVIG 222 (289)
Q Consensus 159 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~~---------~~--~~~~~-~~~~~~~-~~-~l~~~g 222 (289)
.+..+..- +..+|+..- . ...+..|++..+ .=.... +- .+... .|.+... ++ .+|+..
T Consensus 89 p~~i~~~~~g~~l~vany-~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANY-G-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp EEEEEECTTSSEEEEEET-T-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred cEEEEEecCCCEEEEEEc-c-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 23344323 445666532 1 124777777764 211110 11 11111 2333333 44 465543
Q ss_pred eecCCCCCcccceEEEEECCCCc--eeecccccccCCCCCCceeeeeC-CeEEEEeCc
Q 048803 223 GYSTNAQGRFERHAEAFDAAAQQ--WGPVEEDFMETATCPRSCAGVDS-NDLYMCREG 277 (289)
Q Consensus 223 G~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~-~~ly~~GG~ 277 (289)
.. .+.|.+|+.+.+. .........+.-..+++.++.-+ ..+|++...
T Consensus 163 -lG-------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 163 -LG-------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp -TT-------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT
T ss_pred -cC-------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC
Confidence 21 2478888887665 65544433444455665566544 468888753
No 87
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.66 E-value=2 Score=36.22 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=68.5
Q ss_pred CEEEEEeCcC-CC-Ccccc-cceEEEEccCC-----eEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEE
Q 048803 117 PELVVIGGLD-LT-TWEAS-SSVFVFNIISA-----TWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMA 188 (289)
Q Consensus 117 ~~lyv~GG~~-~~-~~~~~-~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 188 (289)
...+++|... .. ..... ..+.+|+.... +.+.+..... .-...+.+. +++++.+..| +.+..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~-~g~V~ai~~-~~~~lv~~~g--------~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV-KGPVTAICS-FNGRLVVAVG--------NKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE-SS-EEEEEE-ETTEEEEEET--------TEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee-cCcceEhhh-hCCEEEEeec--------CEEEE
Confidence 4667777542 11 11123 67899998885 5665543331 112344444 3888666644 35888
Q ss_pred EEcCCCc-eEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccc
Q 048803 189 YDVARDE-WASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEED 252 (289)
Q Consensus 189 yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 252 (289)
|+...+. +...+....+-...+..+.++.|++.--..+ -.+..|+.+..+-..++..
T Consensus 112 ~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s-------v~~~~~~~~~~~l~~va~d 169 (321)
T PF03178_consen 112 YDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS-------VSLLRYDEENNKLILVARD 169 (321)
T ss_dssp EEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS-------EEEEEEETTTE-EEEEEEE
T ss_pred EEccCcccchhhheecceEEEEEEeccccEEEEEEcccC-------EEEEEEEccCCEEEEEEec
Confidence 8888887 8877766555444555667886665433322 1355678867777777763
No 88
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.60 E-value=4.9 Score=32.77 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=85.0
Q ss_pred eEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEe--CCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccc
Q 048803 82 RITVLELGSGEWSELPPIPGFPDGLPLFCQLSAV--GPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRML 159 (289)
Q Consensus 82 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 159 (289)
.+-++|+++..-++.+ +|..+..... ..+++ .+.|++.|-..-. . +.||.++.-+..+... . ...
T Consensus 125 aI~R~dpkt~evt~f~-lp~~~a~~nl--et~vfD~~G~lWFt~q~G~y-----G---rLdPa~~~i~vfpaPq-G-~gp 191 (353)
T COG4257 125 AIGRLDPKTLEVTRFP-LPLEHADANL--ETAVFDPWGNLWFTGQIGAY-----G---RLDPARNVISVFPAPQ-G-GGP 191 (353)
T ss_pred eeEEecCcccceEEee-cccccCCCcc--cceeeCCCccEEEeeccccc-----e---ecCcccCceeeeccCC-C-CCC
Confidence 3445555555444332 3333332211 33344 4578887642211 1 5677777665544332 1 123
Q ss_pred eeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccce--EEECCEEEEEeeecCCCCCcccceEE
Q 048803 160 FGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA--VFHCGKLLVIGGYSTNAQGRFERHAE 237 (289)
Q Consensus 160 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~--~~~~~~l~~~gG~~~~~~~~~~~~v~ 237 (289)
.+.++.-+|.+|+..=. -+.+-..|+.+..=+.++.+......... +--.+++++.--. ...++
T Consensus 192 yGi~atpdGsvwyasla------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg--------~g~l~ 257 (353)
T COG4257 192 YGICATPDGSVWYASLA------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG--------TGSLH 257 (353)
T ss_pred cceEECCCCcEEEEecc------ccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC--------Cceee
Confidence 45666569999987322 23467778887754455443321222222 2235778887211 24689
Q ss_pred EEECCCCceeecccccccCCCCCCceeeeeCCeEEE
Q 048803 238 AFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYM 273 (289)
Q Consensus 238 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~ 273 (289)
.|||++..|.+.+-+. ...++-..-+--.+++++
T Consensus 258 rfdPs~~sW~eypLPg--s~arpys~rVD~~grVW~ 291 (353)
T COG4257 258 RFDPSVTSWIEYPLPG--SKARPYSMRVDRHGRVWL 291 (353)
T ss_pred EeCcccccceeeeCCC--CCCCcceeeeccCCcEEe
Confidence 9999999999987532 222222222334566666
No 89
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.56 E-value=4.9 Score=32.76 Aligned_cols=135 Identities=19% Similarity=0.148 Sum_probs=64.9
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEe-CCCCCCCCccc
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRR-GADMPGGRRML 159 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~ 159 (289)
..+.+||+.+++-...-...... . .......+..+|+.++. ...+.+||..+++... ++... .+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~--~--~l~~~~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~-~~--- 75 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRP--R--GITLSKDGKLLYVCASD-------SDTIQVIDLATGEVIGTLPSGP-DP--- 75 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCC--C--ceEECCCCCEEEEEECC-------CCeEEEEECCCCcEEEeccCCC-Cc---
Confidence 57788998877643222211111 1 01111123456777652 3558889998877643 22211 12
Q ss_pred eeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE-EECCEEEEEeeecCCCCCcccceEE
Q 048803 160 FGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV-FHCGKLLVIGGYSTNAQGRFERHAE 237 (289)
Q Consensus 160 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l~~~gG~~~~~~~~~~~~v~ 237 (289)
...+..-++ .+|+.++.+ ..+..||+.+.+- +..++........+ .-++++++++..+. +.+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~-------~~~~ 140 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT-------NMAH 140 (300)
T ss_pred cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC-------CeEE
Confidence 122222244 566665422 2488899887532 11111111112222 23677777664432 2356
Q ss_pred EEECCCCc
Q 048803 238 AFDAAAQQ 245 (289)
Q Consensus 238 ~yd~~~~~ 245 (289)
.||..+.+
T Consensus 141 ~~d~~~~~ 148 (300)
T TIGR03866 141 FIDTKTYE 148 (300)
T ss_pred EEeCCCCe
Confidence 67876653
No 90
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.33 E-value=7.5 Score=34.30 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=77.6
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..++++|..+++-+.+...+...... ...-.+.+|++..... ...+++++|..+++.+.+..... . ..
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~----~~SPDG~~La~~~~~~-----g~~~I~~~d~~tg~~~~lt~~~~-~--~~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAP----AFSPDGSKLAFALSKT-----GSLNLYVMDLASGQIRQVTDGRS-N--NT 290 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCe----EECCCCCEEEEEEcCC-----CCcEEEEEECCCCCEEEccCCCC-C--cC
Confidence 46778888877766665544322211 2222344566553322 13458999999988877754431 1 11
Q ss_pred eEEEecCCE-EEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEE
Q 048803 161 GCASDGDRT-VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAF 239 (289)
Q Consensus 161 ~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~y 239 (289)
.....-+|+ |++...... ...++.+|+.+..-+.+.... .........-+|+..++.+.... ...++.+
T Consensus 291 ~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~g-----~~~I~~~ 360 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFMVMVSSNGG-----QQHIAKQ 360 (429)
T ss_pred ceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEEccCC-----CceEEEE
Confidence 222222554 444322111 236888898887665553211 11111112235554444433221 1358889
Q ss_pred ECCCCceeeccc
Q 048803 240 DAAAQQWGPVEE 251 (289)
Q Consensus 240 d~~~~~W~~~~~ 251 (289)
|++++++..+..
T Consensus 361 dl~~g~~~~Lt~ 372 (429)
T PRK03629 361 DLATGGVQVLTD 372 (429)
T ss_pred ECCCCCeEEeCC
Confidence 999998887764
No 91
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.25 E-value=6.1 Score=33.69 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=58.3
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEcc--CCeEEeC---CCCCCCCc---cceeEEEecC-CEEEEEcCCCCCCcccCce
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNII--SATWRRG---ADMPGGRR---MLFGCASDGD-RTVYVAGGHDEDKNALKSA 186 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~--t~~W~~~---~~~~~~~~---~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~ 186 (289)
+..+||+.- ..+.+.+|+.. +++++.+ +.++.... ........-+ ..+|+.... .+.+
T Consensus 203 g~~~Yv~~e-------~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI 269 (345)
T PF10282_consen 203 GKYAYVVNE-------LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSI 269 (345)
T ss_dssp SSEEEEEET-------TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEE
T ss_pred cCEEEEecC-------CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEE
Confidence 457899864 34556666555 6666543 34432111 1222333224 467886432 3457
Q ss_pred EEEEc--CCCceEeCCCCCccccccceEEE--CCEEEEEeeecCCCCCcccceEEEE--ECCCCceeeccc
Q 048803 187 MAYDV--ARDEWASLPDMSRERDECKAVFH--CGKLLVIGGYSTNAQGRFERHAEAF--DAAAQQWGPVEE 251 (289)
Q Consensus 187 ~~yd~--~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gG~~~~~~~~~~~~v~~y--d~~~~~W~~~~~ 251 (289)
.+|+. .+++-+.+...+........+.+ +|+..+++.... +.|.+| |.+++.+..+..
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-------~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-------NTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-------TEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-------CeEEEEEEeCCCCcEEEecc
Confidence 77877 45566655444432221222232 455444433322 345655 667888888764
No 92
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.74 E-value=6.9 Score=32.65 Aligned_cols=171 Identities=13% Similarity=0.166 Sum_probs=70.4
Q ss_pred CCCCeEeCCCC-CCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecC
Q 048803 89 GSGEWSELPPI-PGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGD 167 (289)
Q Consensus 89 ~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~ 167 (289)
.-.+|++++-- +.|-.. +...+.-++.++++|. ...+++=.-.-.+|+.+..-. ..........-+
T Consensus 89 gG~tW~~v~l~~~lpgs~---~~i~~l~~~~~~l~~~--------~G~iy~T~DgG~tW~~~~~~~--~gs~~~~~r~~d 155 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSP---FGITALGDGSAELAGD--------RGAIYRTTDGGKTWQAVVSET--SGSINDITRSSD 155 (302)
T ss_dssp TTSS-EE----TT-SS-E---EEEEEEETTEEEEEET--------T--EEEESSTTSSEEEEE-S------EEEEEE-TT
T ss_pred CCCCcEEeecCCCCCCCe---eEEEEcCCCcEEEEcC--------CCcEEEeCCCCCCeeEcccCC--cceeEeEEECCC
Confidence 34679987521 111111 1123344566777653 223444334456798765432 222333333347
Q ss_pred CEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEE--CCCCc
Q 048803 168 RTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFD--AAAQQ 245 (289)
Q Consensus 168 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd--~~~~~ 245 (289)
+++++++...+ -....|+-...|+........|-......-++.|+++. ..+ .+..=| -...+
T Consensus 156 G~~vavs~~G~------~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg--------~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 156 GRYVAVSSRGN------FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG--------QIQFSDDPDDGET 220 (302)
T ss_dssp S-EEEEETTSS------EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT--------EEEEEE-TTEEEE
T ss_pred CcEEEEECccc------EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCc--------EEEEccCCCCccc
Confidence 77666654332 24566888888987655444443333334577888875 221 233333 34567
Q ss_pred eeecccccccCCCCCCce-eeeeCCeEEEEeCceeeccc---CCccc
Q 048803 246 WGPVEEDFMETATCPRSC-AGVDSNDLYMCREGDVMALR---CNTWQ 288 (289)
Q Consensus 246 W~~~~~~~~~~~~~~~~~-~~~~~~~ly~~GG~~~~~~~---~~~w~ 288 (289)
|.+.... .......... +..-++.+++.||...+-+. ..+|+
T Consensus 221 w~~~~~~-~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~ 266 (302)
T PF14870_consen 221 WSEPIIP-IKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQ 266 (302)
T ss_dssp E---B-T-TSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-E
T ss_pred cccccCC-cccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccce
Confidence 8874331 1111111111 22356899999997655442 27775
No 93
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.71 E-value=10 Score=34.52 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=57.2
Q ss_pred eeEEEEECCCCC--eEeCCCCCCCCCCC----CceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCC-C
Q 048803 81 YRITVLELGSGE--WSELPPIPGFPDGL----PLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGA-D 151 (289)
Q Consensus 81 ~~~~~~d~~~~~--W~~~~~~~~~~~~~----~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~-~ 151 (289)
..++++|..+++ |+.-...+...... ......+..+++||+.. ....+..+|..|++ |+.-. +
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t--------~dg~l~ALDa~TGk~~W~~~~~~ 150 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT--------LDARLVALDAKTGKVVWSKKNGD 150 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc--------CCCEEEEEECCCCCEEeeccccc
Confidence 568899988765 76444332111100 00113456677888642 23468899998886 76432 2
Q ss_pred CCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc--eE
Q 048803 152 MPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE--WA 197 (289)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~ 197 (289)
+. ......+..++.+++||+.....+ ......+..||.+|++ |+
T Consensus 151 ~~-~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 151 YK-AGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred cc-ccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEe
Confidence 22 111112222334888877532211 1123468999999874 76
No 94
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=91.45 E-value=6.7 Score=33.71 Aligned_cols=141 Identities=14% Similarity=0.125 Sum_probs=78.8
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEE
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYD 190 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 190 (289)
.+.-.+|.|.+.||.+..+ .++|..|++-...-.-. ....++++..-+|+..+.|+.++ .+-+.|
T Consensus 309 iaf~~DGSL~~tGGlD~~~-------RvWDlRtgr~im~L~gH--~k~I~~V~fsPNGy~lATgs~Dn------t~kVWD 373 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLG-------RVWDLRTGRCIMFLAGH--IKEILSVAFSPNGYHLATGSSDN------TCKVWD 373 (459)
T ss_pred eEecCCCceeeccCccchh-------heeecccCcEEEEeccc--ccceeeEeECCCceEEeecCCCC------cEEEee
Confidence 3445688999999987432 35688887754432212 12234444434888888888655 366667
Q ss_pred cCCCceEeCCCCCccccccceEE---ECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCceeeee
Q 048803 191 VARDEWASLPDMSRERDECKAVF---HCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVD 267 (289)
Q Consensus 191 ~~~~~W~~~~~~~~~~~~~~~~~---~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 267 (289)
+....= +-.+|.-..-.+-+- -.|+..+.++++. .+-.|. +..|+.+..+- ........+-...
T Consensus 374 LR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~--------t~kiWs--~~~~~~~ksLa-GHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 374 LRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN--------TVKIWS--TRTWSPLKSLA-GHEGKVISLDISP 440 (459)
T ss_pred eccccc--ceecccccchhhheEecccCCeEEEEcccCc--------ceeeec--CCCcccchhhc-CCccceEEEEecc
Confidence 664321 333443222222221 2578888888864 344554 67788887742 2222222233346
Q ss_pred CCeEEEEeCcee
Q 048803 268 SNDLYMCREGDV 279 (289)
Q Consensus 268 ~~~ly~~GG~~~ 279 (289)
++..++.+++|.
T Consensus 441 d~~~i~t~s~DR 452 (459)
T KOG0272|consen 441 DSQAIATSSFDR 452 (459)
T ss_pred CCceEEEeccCc
Confidence 677777777653
No 95
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.88 E-value=12 Score=33.73 Aligned_cols=109 Identities=14% Similarity=0.213 Sum_probs=53.3
Q ss_pred eeEEEEECCCCC--eEeCCCCCCCCC-CCCceeEEEEeC-CEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCCCC
Q 048803 81 YRITVLELGSGE--WSELPPIPGFPD-GLPLFCQLSAVG-PELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADMPG 154 (289)
Q Consensus 81 ~~~~~~d~~~~~--W~~~~~~~~~~~-~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~ 154 (289)
..++++|..+++ |+.-...+.... ........+..+ ++||+.. ....++.+|..|++ |+.-..-..
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~--------~~g~v~AlD~~TG~~~W~~~~~~~~ 142 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT--------FDGRLVALDAETGKQVWKFGNNDQV 142 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec--------CCCeEEEEECCCCCEeeeecCCCCc
Confidence 578889988765 764332220000 000001233445 7787642 23568889988775 875432220
Q ss_pred CCcc-ceeEEEecCCEEEEEcCCCCCC---cccCceEEEEcCCC--ceEe
Q 048803 155 GRRM-LFGCASDGDRTVYVAGGHDEDK---NALKSAMAYDVARD--EWAS 198 (289)
Q Consensus 155 ~~~~-~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~~~--~W~~ 198 (289)
.... ..+..++.++.+|+ |...... .....++.+|.+|+ .|+.
T Consensus 143 ~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 143 PPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 0000 11112223666665 3222110 11246899999986 4874
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=90.81 E-value=4.9 Score=32.18 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=65.2
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..+..||..+++-..--.++.+... .=+..+++|+.+. ..+.+-.+|+.+-.--+--.|| ....
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtS-----lEvs~dG~ilTia--------~gssV~Fwdaksf~~lKs~k~P---~nV~ 228 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTS-----LEVSQDGRILTIA--------YGSSVKFWDAKSFGLLKSYKMP---CNVE 228 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcc-----eeeccCCCEEEEe--------cCceeEEeccccccceeeccCc---cccc
Confidence 4566677766654322223333321 2234566676663 2344666777654432333444 2222
Q ss_pred eEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEE---ECCEEEEEeeecC
Q 048803 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVF---HCGKLLVIGGYST 226 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~---~~~~l~~~gG~~~ 226 (289)
+++.--+..+||.||-+- .+++||-.|+. ++......+.++..++ -+|.+|..|..++
T Consensus 229 SASL~P~k~~fVaGged~------~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGEDF------KVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred cccccCCCceEEecCcce------EEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 333322668999998543 47888888873 3333333333333322 3899999987664
No 97
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.46 E-value=11 Score=32.80 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=79.1
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..++++|..+++-..+...+..... ....-.+..|++..... ...+++.+|..++..+.+..... ....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~----~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~-~~~~- 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA----PAFSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPG-IDTE- 282 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc----eEECCCCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCC-CCCC-
Confidence 4688899888876665544322211 12222234566553322 23578999999888777754431 1111
Q ss_pred eEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE-EECCEEEEEeeecCCCCCcccceEEE
Q 048803 161 GCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV-FHCGKLLVIGGYSTNAQGRFERHAEA 238 (289)
Q Consensus 161 ~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~l~~~gG~~~~~~~~~~~~v~~ 238 (289)
.....++ +|++...... ...++.+|..+..+..+..-. ......+ .-+++.+++...... ...+..
T Consensus 283 -~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~~-----~~~i~~ 350 (417)
T TIGR02800 283 -PSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREGG-----GFNIAV 350 (417)
T ss_pred -EEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccCC-----ceEEEE
Confidence 1111244 4554432221 236889999888877654221 1111222 235665555544321 136899
Q ss_pred EECCCCceeeccc
Q 048803 239 FDAAAQQWGPVEE 251 (289)
Q Consensus 239 yd~~~~~W~~~~~ 251 (289)
+|+.++.++.+..
T Consensus 351 ~d~~~~~~~~l~~ 363 (417)
T TIGR02800 351 MDLDGGGERVLTD 363 (417)
T ss_pred EeCCCCCeEEccC
Confidence 9998877776654
No 98
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.16 E-value=12 Score=32.84 Aligned_cols=153 Identities=10% Similarity=0.125 Sum_probs=84.1
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..++++|..+++=+.+...+..... ....-.+.+|.+.-... ...+++++|..+++++++...+. .-...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~----~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p 282 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVV----SDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTKTLTQITNYPG-IDVNG 282 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEe----eEECCCCCEEEEEEccC-----CCcEEEEEECCCCcEEEcccCCC-ccCcc
Confidence 4788889888876666543221110 11212234565553322 24679999999999988866542 11111
Q ss_pred eEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCC-CcccceEEEE
Q 048803 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQ-GRFERHAEAF 239 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~-~~~~~~v~~y 239 (289)
..+. -+.+|++.....+ ...++.+|+.+++.+.+..-. ... ....-+|+..++........ +.....++.+
T Consensus 283 ~~SP-DG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g--~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 283 NFVE-DDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHG--KNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred EECC-CCCEEEEEECCCC----CceEEEEECCCCCeEeCccCC--CcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 2222 1346776643322 347999999998886664321 111 22333555444433322111 1112468999
Q ss_pred ECCCCceeeccc
Q 048803 240 DAAAQQWGPVEE 251 (289)
Q Consensus 240 d~~~~~W~~~~~ 251 (289)
|++++.++.+..
T Consensus 355 d~~~g~~~~LT~ 366 (419)
T PRK04043 355 STNSDYIRRLTA 366 (419)
T ss_pred ECCCCCeEECCC
Confidence 999999988876
No 99
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.04 E-value=5.6 Score=35.71 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=38.1
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCC--CCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCC
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPG--GRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVAR 193 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~--~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 193 (289)
.-.||++| ...+++++|+..++| +.++.. +..+..+... -..+.++||.++ .++.+|+.+
T Consensus 145 scDly~~g--------sg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~--~hgLla~Gt~~g------~VEfwDpR~ 206 (703)
T KOG2321|consen 145 SCDLYLVG--------SGSEVYRLNLEQGRF--LNPFETDSGELNVVSINE--EHGLLACGTEDG------VVEFWDPRD 206 (703)
T ss_pred CccEEEee--------cCcceEEEEcccccc--ccccccccccceeeeecC--ccceEEecccCc------eEEEecchh
Confidence 34678775 367899999999998 333332 2222222222 344778887554 488889887
Q ss_pred Cc
Q 048803 194 DE 195 (289)
Q Consensus 194 ~~ 195 (289)
..
T Consensus 207 ks 208 (703)
T KOG2321|consen 207 KS 208 (703)
T ss_pred hh
Confidence 63
No 100
>PRK04922 tolB translocation protein TolB; Provisional
Probab=89.98 E-value=13 Score=32.81 Aligned_cols=147 Identities=15% Similarity=0.159 Sum_probs=77.2
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..++++|..+++-+.+...+..... ....-.+.+|++....+ ...+++++|+.+++-+.+..... .. .
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~----~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~g~~~~lt~~~~-~~--~ 295 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGA----PSFSPDGRRLALTLSRD-----GNPEIYVMDLGSRQLTRLTNHFG-ID--T 295 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccC----ceECCCCCEEEEEEeCC-----CCceEEEEECCCCCeEECccCCC-Cc--c
Confidence 4678889888877766654432211 12222344565543222 13579999999888776654331 11 1
Q ss_pred eEEEecCCE-EEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE-EECC-EEEEEeeecCCCCCcccceEE
Q 048803 161 GCASDGDRT-VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV-FHCG-KLLVIGGYSTNAQGRFERHAE 237 (289)
Q Consensus 161 ~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~-~l~~~gG~~~~~~~~~~~~v~ 237 (289)
..+..-+++ |++...... ...++.+|..+++.+.+..- .......+ .-+| +|++..+. . +. ..+.
T Consensus 296 ~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~-~---~~--~~I~ 363 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGS-G---GQ--YRIA 363 (433)
T ss_pred ceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECC-C---Cc--eeEE
Confidence 122222444 544432211 23688899888877765321 11111222 2244 44444332 1 11 2689
Q ss_pred EEECCCCceeeccc
Q 048803 238 AFDAAAQQWGPVEE 251 (289)
Q Consensus 238 ~yd~~~~~W~~~~~ 251 (289)
.+|+.+++...+..
T Consensus 364 v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 364 VMDLSTGSVRTLTP 377 (433)
T ss_pred EEECCCCCeEECCC
Confidence 99998888876654
No 101
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.61 E-value=3 Score=29.77 Aligned_cols=61 Identities=10% Similarity=-0.041 Sum_probs=42.8
Q ss_pred EEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeC
Q 048803 212 VFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCRE 276 (289)
Q Consensus 212 ~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG 276 (289)
+.+||-+|-.+..... ....|.+||..+.+|+.+..+..+........++..+|+|-++.-
T Consensus 2 icinGvly~~a~~~~~----~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 62 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDS----DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSY 62 (129)
T ss_pred EEECcEEEeEEEECCC----CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEe
Confidence 4568888888766211 235799999999999988763113333444568889999999854
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.43 E-value=8.7 Score=33.48 Aligned_cols=97 Identities=11% Similarity=0.217 Sum_probs=55.5
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
.-++.||..+.+-..+.++-.-.. ..+..--++..+..+++.|. ...+......|+.|-.--.++ ......
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~-~~~e~FeVShd~~fia~~G~-------~G~I~lLhakT~eli~s~Kie-G~v~~~ 350 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEE-KSMERFEVSHDSNFIAIAGN-------NGHIHLLHAKTKELITSFKIE-GVVSDF 350 (514)
T ss_pred eEEEEeeccccccccccCCCCccc-chhheeEecCCCCeEEEccc-------CceEEeehhhhhhhhheeeec-cEEeeE
Confidence 568899999998877765432111 11111233445556666563 344666777777774333333 222233
Q ss_pred eEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC
Q 048803 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD 194 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 194 (289)
.... .+..|++.||+. .++.+|+.++
T Consensus 351 ~fsS-dsk~l~~~~~~G-------eV~v~nl~~~ 376 (514)
T KOG2055|consen 351 TFSS-DSKELLASGGTG-------EVYVWNLRQN 376 (514)
T ss_pred EEec-CCcEEEEEcCCc-------eEEEEecCCc
Confidence 3333 245678888765 3899999887
No 103
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.19 E-value=9.8 Score=30.27 Aligned_cols=94 Identities=13% Similarity=0.169 Sum_probs=61.4
Q ss_pred ccceEEEEccCCeEE-eCCCCCCCCccceeEEEec--CCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCcccccc
Q 048803 133 SSSVFVFNIISATWR-RGADMPGGRRMLFGCASDG--DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDEC 209 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~ 209 (289)
-..+.+||..|++-. +..... . .--++.+ +..+.+.|+.+. .+-.+|-.++..+++.-+...+.+.
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~-a----qVNtV~fNeesSVv~SgsfD~------s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHL-A----QVNTVRFNEESSVVASGSFDS------SVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred CceEEEEEcccCeeeeeccccc-c----eeeEEEecCcceEEEeccccc------eeEEEEcccCCCCccchhhhhcCce
Confidence 356889999998742 222111 1 1111112 345666666553 4888999999999888888888888
Q ss_pred ceEEECCEEEEEeeecCCCCCcccceEEEEECCCCc
Q 048803 210 KAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQ 245 (289)
Q Consensus 210 ~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~ 245 (289)
.++.+.+...+.|..++ .+-.||+.-++
T Consensus 149 ~Si~v~~heIvaGS~DG--------tvRtydiR~G~ 176 (307)
T KOG0316|consen 149 SSIDVAEHEIVAGSVDG--------TVRTYDIRKGT 176 (307)
T ss_pred eEEEecccEEEeeccCC--------cEEEEEeecce
Confidence 88888888777776553 46777775544
No 104
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.91 E-value=22 Score=33.98 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=43.7
Q ss_pred EecCCEEEEEcCCC-CC---CcccCceEEEEcCCCc--eEeC--CC-----CCcc----cccc---ceEEEC---CEEEE
Q 048803 164 SDGDRTVYVAGGHD-ED---KNALKSAMAYDVARDE--WASL--PD-----MSRE----RDEC---KAVFHC---GKLLV 220 (289)
Q Consensus 164 ~~~~~~iyv~GG~~-~~---~~~~~~~~~yd~~~~~--W~~~--~~-----~~~~----~~~~---~~~~~~---~~l~~ 220 (289)
++.++.||+ |+.. +. ....-.+..||.+|++ |+.- .+ ++.. +... ....+| |.+|+
T Consensus 313 ~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ 391 (764)
T TIGR03074 313 LVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYL 391 (764)
T ss_pred EEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEE
Confidence 334777766 4432 11 1123468999999974 7632 11 1110 1111 223333 55676
Q ss_pred EeeecCC---------CCCcccceEEEEECCCC--ceee
Q 048803 221 IGGYSTN---------AQGRFERHAEAFDAAAQ--QWGP 248 (289)
Q Consensus 221 ~gG~~~~---------~~~~~~~~v~~yd~~~~--~W~~ 248 (289)
--|.... ..+.+.+++.+.|++|+ +|+.
T Consensus 392 ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 392 PMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred eCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 4443221 12346788999999987 4865
No 105
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=88.87 E-value=9.8 Score=31.99 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=65.8
Q ss_pred eeEEEEECCCC-----CeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe-EEeCCCCCC
Q 048803 81 YRITVLELGSG-----EWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT-WRRGADMPG 154 (289)
Q Consensus 81 ~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~ 154 (289)
-.+..|+.... +.+.+.....+-. -.+++.++++|++..| ..+.+|+...++ +.....+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~----V~ai~~~~~~lv~~~g---------~~l~v~~l~~~~~l~~~~~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGP----VTAICSFNGRLVVAVG---------NKLYVYDLDNSKTLLKKAFYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-----EEEEEEETTEEEEEET---------TEEEEEEEETTSSEEEEEEE-B
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCc----ceEhhhhCCEEEEeec---------CEEEEEEccCcccchhhheecc
Confidence 56788888774 4444433222111 2367788999666544 557888888888 887776652
Q ss_pred CCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEE-CCEEEEE
Q 048803 155 GRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFH-CGKLLVI 221 (289)
Q Consensus 155 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~l~~~ 221 (289)
+.......+ .++.|++. -.... -.+..|+.+..+-..++.-..++.-.++..+ ++..++.
T Consensus 129 -~~~i~sl~~-~~~~I~vg-D~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 129 -PFYITSLSV-FKNYILVG-DAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp -SSSEEEEEE-ETTEEEEE-ESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred -eEEEEEEec-cccEEEEE-EcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence 223333444 47766654 22211 1356677766666666543444444444455 5553333
No 106
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.75 E-value=10 Score=29.97 Aligned_cols=63 Identities=10% Similarity=0.166 Sum_probs=31.6
Q ss_pred CEEEEEeCcCCCCcccccceEEEEccCCeEE-eCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc
Q 048803 117 PELVVIGGLDLTTWEASSSVFVFNIISATWR-RGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE 195 (289)
Q Consensus 117 ~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 195 (289)
++.+++++. ...+.+||..+++-. .+.... ..........++.+++.++.+. .+..||+.+..
T Consensus 63 ~~~l~~~~~-------~~~i~i~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~------~i~~~~~~~~~ 126 (289)
T cd00200 63 GTYLASGSS-------DKTIRLWDLETGECVRTLTGHT---SYVSSVAFSPDGRILSSSSRDK------TIKVWDVETGK 126 (289)
T ss_pred CCEEEEEcC-------CCeEEEEEcCcccceEEEeccC---CcEEEEEEcCCCCEEEEecCCC------eEEEEECCCcE
Confidence 345555553 345788888765321 122111 1122233322456666665332 48889888543
No 107
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=88.29 E-value=9.6 Score=30.59 Aligned_cols=125 Identities=13% Similarity=0.068 Sum_probs=66.2
Q ss_pred ccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE
Q 048803 133 SSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV 212 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 212 (289)
...+..+|..|++-..--.++.+ ..++-+..+|+|..+.- ...+...|+++-.=.+--.||.....++.-
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~---VtSlEvs~dG~ilTia~-------gssV~Fwdaksf~~lKs~k~P~nV~SASL~ 233 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSP---VTSLEVSQDGRILTIAY-------GSSVKFWDAKSFGLLKSYKMPCNVESASLH 233 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCC---CcceeeccCCCEEEEec-------CceeEEeccccccceeeccCcccccccccc
Confidence 45577888888875433333311 22344434777766521 123555565543222222344433222221
Q ss_pred EECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCcee-eeeCCeEEEEeCcee
Q 048803 213 FHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCA-GVDSNDLYMCREGDV 279 (289)
Q Consensus 213 ~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~ly~~GG~~~ 279 (289)
-+..+||.||.+. .++.||..|++=...-. .....+.+|+ +..+|.+|..|-.|+
T Consensus 234 -P~k~~fVaGged~--------~~~kfDy~TgeEi~~~n---kgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 234 -PKKEFFVAGGEDF--------KVYKFDYNTGEEIGSYN---KGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred -CCCceEEecCcce--------EEEEEeccCCceeeecc---cCCCCceEEEEECCCCceeeccCCCc
Confidence 2457899998764 57889998876322210 1111122233 357999999998765
No 108
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=88.08 E-value=30 Score=34.55 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=61.4
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEccCCeEEeCC--C--CC-----C----------CCccceeEEEecCCEEEEEcCC
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNIISATWRRGA--D--MP-----G----------GRRMLFGCASDGDRTVYVAGGH 176 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~--~--~~-----~----------~~~~~~~~~~~~~~~iyv~GG~ 176 (289)
++.||+.... .+.+.+||+.++....+. . .+ . ......+.++.-+|.+||....
T Consensus 751 G~~LYVADs~-------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~ 823 (1057)
T PLN02919 751 LKELYIADSE-------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY 823 (1057)
T ss_pred CCEEEEEECC-------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC
Confidence 4569988542 467889998876532110 0 00 0 0011234444447889998543
Q ss_pred CCCCcccCceEEEEcCCCceEeCCCCCc-----------cccccc-eEE-ECCEEEEEeeecCCCCCcccceEEEEECCC
Q 048803 177 DEDKNALKSAMAYDVARDEWASLPDMSR-----------ERDECK-AVF-HCGKLLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~-----------~~~~~~-~~~-~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
...+.+||+.++....+..... ...... +++ -+|++|+....+ +.|.++|..+
T Consensus 824 ------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N--------n~Irvid~~~ 889 (1057)
T PLN02919 824 ------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN--------SLIRYLDLNK 889 (1057)
T ss_pred ------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC--------CEEEEEECCC
Confidence 2459999999887765532110 011122 222 368899886433 3688999988
Q ss_pred Cc
Q 048803 244 QQ 245 (289)
Q Consensus 244 ~~ 245 (289)
++
T Consensus 890 ~~ 891 (1057)
T PLN02919 890 GE 891 (1057)
T ss_pred Cc
Confidence 65
No 109
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.07 E-value=25 Score=33.62 Aligned_cols=122 Identities=15% Similarity=0.237 Sum_probs=63.0
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCCCCCC-c---cceeEE-----------------EecC
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADMPGGR-R---MLFGCA-----------------SDGD 167 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~-~---~~~~~~-----------------~~~~ 167 (289)
+-+.+++.||+... ...++.+|..|++ |+.-+..+... . ...+.+ .+.+
T Consensus 189 TPlvvgg~lYv~t~--------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~ 260 (764)
T TIGR03074 189 TPLKVGDTLYLCTP--------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCA 260 (764)
T ss_pred CCEEECCEEEEECC--------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccC
Confidence 45678999999843 4567778887765 77554433110 0 000010 1124
Q ss_pred CEEEEEcCCCCCCcccCceEEEEcCCCc--eEe-----------CCCCCccc--cccceEEECCEEEEEeeecCC--CCC
Q 048803 168 RTVYVAGGHDEDKNALKSAMAYDVARDE--WAS-----------LPDMSRER--DECKAVFHCGKLLVIGGYSTN--AQG 230 (289)
Q Consensus 168 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~-----------~~~~~~~~--~~~~~~~~~~~l~~~gG~~~~--~~~ 230 (289)
++||+. ..+ ..++.+|.+|++ |.. +.+.+... .....++.+++|++ |+.... ...
T Consensus 261 ~rV~~~-T~D------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~ 332 (764)
T TIGR03074 261 RRIILP-TSD------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTD 332 (764)
T ss_pred CEEEEe-cCC------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eeccccccccc
Confidence 466653 222 236777777663 542 12222221 22334667888776 432111 101
Q ss_pred cccceEEEEECCCCc--eee
Q 048803 231 RFERHAEAFDAAAQQ--WGP 248 (289)
Q Consensus 231 ~~~~~v~~yd~~~~~--W~~ 248 (289)
.....|..||.+|++ |+-
T Consensus 333 ~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 333 EPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred CCCcEEEEEECCCCcEeeEE
Confidence 123578999999874 764
No 110
>PRK05137 tolB translocation protein TolB; Provisional
Probab=87.77 E-value=19 Score=31.82 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=76.3
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..++++|+.+++.+.+...+...... ...-.+.+|++....+ ...+++++|..++.-+.+...+. .....
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~----~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~Lt~~~~-~~~~~ 295 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP----RFSPDGRKVVMSLSQG-----GNTDIYTMDLRSGTTTRLTDSPA-IDTSP 295 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc----EECCCCCEEEEEEecC-----CCceEEEEECCCCceEEccCCCC-ccCce
Confidence 47889999888887776554422211 2222344555443322 24678999999888777765431 11111
Q ss_pred eEEEecCCE-EEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEE
Q 048803 161 GCASDGDRT-VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAF 239 (289)
Q Consensus 161 ~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~y 239 (289)
..+ -+++ |++..... ....++.+|..+...+.+.... .........-+|+..++...... ...+..+
T Consensus 296 ~~s--pDG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~-----~~~i~~~ 363 (435)
T PRK05137 296 SYS--PDGSQIVFESDRS----GSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGG-----QFSIGVM 363 (435)
T ss_pred eEc--CCCCEEEEEECCC----CCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCC-----ceEEEEE
Confidence 222 2444 44332211 1246888998877666553221 11111112235544443332211 1268888
Q ss_pred ECCCCceeecc
Q 048803 240 DAAAQQWGPVE 250 (289)
Q Consensus 240 d~~~~~W~~~~ 250 (289)
|+.++....+.
T Consensus 364 d~~~~~~~~lt 374 (435)
T PRK05137 364 KPDGSGERILT 374 (435)
T ss_pred ECCCCceEecc
Confidence 98776655554
No 111
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.69 E-value=15 Score=30.66 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=64.8
Q ss_pred CCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCE
Q 048803 90 SGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRT 169 (289)
Q Consensus 90 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~ 169 (289)
-.+|+....-....... ....+...++..|++|.. .-+.+-.-.-.+|++++-....+-..+......++.
T Consensus 46 G~tW~~~~~~~~~~~~~-~l~~I~f~~~~g~ivG~~--------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~ 116 (302)
T PF14870_consen 46 GKTWQPVSLDLDNPFDY-HLNSISFDGNEGWIVGEP--------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS 116 (302)
T ss_dssp TSS-EE-----S------EEEEEEEETTEEEEEEET--------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTE
T ss_pred CccccccccCCCcccee-eEEEEEecCCceEEEcCC--------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc
Confidence 36688775322211111 122344567889988631 123333334567999752111222334445444677
Q ss_pred EEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeec
Q 048803 170 VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPV 249 (289)
Q Consensus 170 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~ 249 (289)
+.+++... .++.=.=.-.+|+.+..-...........-+|++++++... +-....|+....|+..
T Consensus 117 ~~l~~~~G-------~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G--------~~~~s~~~G~~~w~~~ 181 (302)
T PF14870_consen 117 AELAGDRG-------AIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG--------NFYSSWDPGQTTWQPH 181 (302)
T ss_dssp EEEEETT---------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS--------SEEEEE-TT-SS-EEE
T ss_pred EEEEcCCC-------cEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc--------cEEEEecCCCccceEE
Confidence 77765321 13332223458997654332211111223467766666432 1345678888899988
Q ss_pred ccccccCCCCCCceeeeeCCeEEEEe
Q 048803 250 EEDFMETATCPRSCAGVDSNDLYMCR 275 (289)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~ly~~G 275 (289)
... ..++.....+.-++.|++++
T Consensus 182 ~r~---~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 182 NRN---SSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp E-----SSS-EEEEEE-TTS-EEEEE
T ss_pred ccC---ccceehhceecCCCCEEEEe
Confidence 762 22334333445577787774
No 112
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=87.66 E-value=16 Score=30.78 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=51.5
Q ss_pred EEEEEeCcCCCCcccccceEEEEccC-CeEEeCCCCCCCCccceeEEEecC-CEEEEEcCCCCCCcccCceEEEEcC-CC
Q 048803 118 ELVVIGGLDLTTWEASSSVFVFNIIS-ATWRRGADMPGGRRMLFGCASDGD-RTVYVAGGHDEDKNALKSAMAYDVA-RD 194 (289)
Q Consensus 118 ~lyv~GG~~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~-~~ 194 (289)
++|+..+. ...+.+||..+ ++++.+...+.. ......+..-+ ..+|+.+... ..+..|+.. ++
T Consensus 3 ~~y~~~~~-------~~~I~~~~~~~~g~l~~~~~~~~~-~~~~~l~~spd~~~lyv~~~~~------~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPE-------SQQIHVWNLNHEGALTLLQVVDVP-GQVQPMVISPDKRHLYVGVRPE------FRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCC-------CCCEEEEEECCCCceeeeeEEecC-CCCccEEECCCCCEEEEEECCC------CcEEEEEECCCC
Confidence 56777442 35577788754 566655544321 11222333224 4567754321 347777775 45
Q ss_pred ceEeCCCCCccccccceEE-ECCE-EEEEeeecCCCCCcccceEEEEECCC
Q 048803 195 EWASLPDMSRERDECKAVF-HCGK-LLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 195 ~W~~~~~~~~~~~~~~~~~-~~~~-l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
++..+...+.+......+. -+++ +|+. .+.. +.+.+||.++
T Consensus 69 ~l~~~~~~~~~~~p~~i~~~~~g~~l~v~-~~~~-------~~v~v~~~~~ 111 (330)
T PRK11028 69 ALTFAAESPLPGSPTHISTDHQGRFLFSA-SYNA-------NCVSVSPLDK 111 (330)
T ss_pred ceEEeeeecCCCCceEEEECCCCCEEEEE-EcCC-------CeEEEEEECC
Confidence 6765544332222122222 2455 5554 3321 3678888764
No 113
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.20 E-value=11 Score=28.28 Aligned_cols=81 Identities=10% Similarity=0.109 Sum_probs=46.5
Q ss_pred cCCEEEEEcCCCCCCcccCceEEEEcCCCce-EeCCCCCccc---cccceE-EECCEEEEEeeecCCCCCcccceEEEEE
Q 048803 166 GDRTVYVAGGHDEDKNALKSAMAYDVARDEW-ASLPDMSRER---DECKAV-FHCGKLLVIGGYSTNAQGRFERHAEAFD 240 (289)
Q Consensus 166 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~---~~~~~~-~~~~~l~~~gG~~~~~~~~~~~~v~~yd 240 (289)
++|.+|+++....... ...+..||+.++++ +.++.++... ...... +.+++|.++-..... ..-.|++-+
T Consensus 4 vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~----~~~~IWvm~ 78 (164)
T PF07734_consen 4 VNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDET----SKIEIWVMK 78 (164)
T ss_pred ECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCC----ccEEEEEEe
Confidence 4899999977554321 12699999999999 5444333222 122232 237788888532221 112455544
Q ss_pred ---CCCCceeeccc
Q 048803 241 ---AAAQQWGPVEE 251 (289)
Q Consensus 241 ---~~~~~W~~~~~ 251 (289)
.....|+++-.
T Consensus 79 ~~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 79 KYGYGKESWTKLFT 92 (164)
T ss_pred eeccCcceEEEEEE
Confidence 23678987643
No 114
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=86.84 E-value=23 Score=31.87 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=65.6
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCCCC----CCccceeEEEecC-CEEEEEcCCCCCCccc
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADMPG----GRRMLFGCASDGD-RTVYVAGGHDEDKNAL 183 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~----~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~ 183 (289)
+-++.++.||+... ...++.+|..|++ |+.-...+. ......+.++ .+ ++||+... +
T Consensus 56 sPvv~~g~vy~~~~--------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~-~------ 119 (488)
T cd00216 56 TPLVVDGDMYFTTS--------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTF-D------ 119 (488)
T ss_pred CCEEECCEEEEeCC--------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecC-C------
Confidence 34577899998643 3567888988776 875332210 0111112222 35 78887532 1
Q ss_pred CceEEEEcCCC--ceEeCCCCCc-cc--cccceEEECCEEEEEeeecCCC-CCcccceEEEEECCCC--ceeec
Q 048803 184 KSAMAYDVARD--EWASLPDMSR-ER--DECKAVFHCGKLLVIGGYSTNA-QGRFERHAEAFDAAAQ--QWGPV 249 (289)
Q Consensus 184 ~~~~~yd~~~~--~W~~~~~~~~-~~--~~~~~~~~~~~l~~~gG~~~~~-~~~~~~~v~~yd~~~~--~W~~~ 249 (289)
..+..+|.+|+ .|+.-..... .. ...+.++.++.+|+ |...... .......++++|.+++ .|+.-
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 25899999876 4885433221 11 12344566776665 3221110 0002246899999876 48753
No 115
>smart00284 OLF Olfactomedin-like domains.
Probab=86.56 E-value=16 Score=29.66 Aligned_cols=154 Identities=15% Similarity=0.201 Sum_probs=82.6
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCC-----------CccceeEEEecCCEEEEEcCCCCC
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGG-----------RRMLFGCASDGDRTVYVAGGHDED 179 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-----------~~~~~~~~~~~~~~iyv~GG~~~~ 179 (289)
..++.++.+|.--. .+..+.+||+.+.+-.....+|.+ .....-.++. ..-|+|+=.....
T Consensus 78 G~VVYngslYY~~~-------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvD-E~GLWvIYat~~~ 149 (255)
T smart00284 78 GVVVYNGSLYFNKF-------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVD-ENGLWVIYATEQN 149 (255)
T ss_pred cEEEECceEEEEec-------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEc-CCceEEEEeccCC
Confidence 67888999987422 357799999999875433333311 1112334553 3345555332221
Q ss_pred CcccCceEEEEcCCC----ceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeeccccccc
Q 048803 180 KNALKSAMAYDVARD----EWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFME 255 (289)
Q Consensus 180 ~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 255 (289)
. ..-.+-+.|+.+- +|.. +.+.. .-..+.++.|.||++-..... -..-.++||..+++=..+... .+
T Consensus 150 ~-g~ivvSkLnp~tL~ve~tW~T--~~~k~-sa~naFmvCGvLY~~~s~~~~----~~~I~yayDt~t~~~~~~~i~-f~ 220 (255)
T smart00284 150 A-GKIVISKLNPATLTIENTWIT--TYNKR-SASNAFMICGILYVTRSLGSK----GEKVFYAYDTNTGKEGHLDIP-FE 220 (255)
T ss_pred C-CCEEEEeeCcccceEEEEEEc--CCCcc-cccccEEEeeEEEEEccCCCC----CcEEEEEEECCCCccceeeee-ec
Confidence 1 1123456777764 5764 22322 223445667899999642221 123468899988764443332 22
Q ss_pred CCCCCCceee---eeCCeEEEEeCceeecc
Q 048803 256 TATCPRSCAG---VDSNDLYMCREGDVMAL 282 (289)
Q Consensus 256 ~~~~~~~~~~---~~~~~ly~~GG~~~~~~ 282 (289)
..... .++. -.+++||+..-...+-|
T Consensus 221 n~y~~-~s~l~YNP~d~~LY~wdng~~l~Y 249 (255)
T smart00284 221 NMYEY-ISMLDYNPNDRKLYAWNNGHLVHY 249 (255)
T ss_pred ccccc-ceeceeCCCCCeEEEEeCCeEEEE
Confidence 22212 2233 25788998876555444
No 116
>PF13013 F-box-like_2: F-box-like domain
Probab=85.78 E-value=1.2 Score=30.76 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCCChHHHHHHHhhcCChhhHHHHHHHhh
Q 048803 4 IPDLPNEIALECLSRVSYKQFATISSVCK 32 (289)
Q Consensus 4 ~~~Lp~dl~~~il~~lp~~~l~~~~~v~k 32 (289)
+.+||+||++.|+.......+..+.-.|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67899999999999998888866655555
No 117
>PRK04792 tolB translocation protein TolB; Provisional
Probab=85.67 E-value=25 Score=31.22 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=57.8
Q ss_pred ccceEEEEccCCeEEeCCCCCCCCccceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccce
Q 048803 133 SSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA 211 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 211 (289)
..+++++|..+++-+.+...+. ... ..+..-+| .|++....++ ...++.+|+.+++.+.+..-....... .
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g-~~~--~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~~~p-~ 312 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPG-ING--APRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAIDTEP-S 312 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCC-CcC--CeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCccce-E
Confidence 4579999999888766665542 111 22222244 4655432221 246899999999887765422111111 1
Q ss_pred EEECCE-EEEEeeecCCCCCcccceEEEEECCCCceeecc
Q 048803 212 VFHCGK-LLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVE 250 (289)
Q Consensus 212 ~~~~~~-l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 250 (289)
..-+|+ |++.....+ ...++.+|.+++++..+.
T Consensus 313 wSpDG~~I~f~s~~~g------~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 313 WHPDGKSLIFTSERGG------KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred ECCCCCEEEEEECCCC------CceEEEEECCCCCEEEEe
Confidence 123454 444432221 136899999988888774
No 118
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=84.71 E-value=16 Score=28.16 Aligned_cols=144 Identities=13% Similarity=0.113 Sum_probs=67.4
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeC----CCCCCCCccceeEEEecCCEEEEEcCCCCCCcccC
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRG----ADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALK 184 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~----~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 184 (289)
++....+++|++-| +.+|+++..... -+.+ +.++ .....+.....++++|++-|.
T Consensus 11 A~~~~~g~~y~FkG---------~~~w~~~~~~~~~~p~~I~~~w~~~p--~~IDAa~~~~~~~~~yfFkg~-------- 71 (194)
T cd00094 11 AVTTLRGELYFFKG---------RYFWRLSPGKPPGSPFLISSFWPSLP--SPVDAAFERPDTGKIYFFKGD-------- 71 (194)
T ss_pred eEEEeCCEEEEEeC---------CEEEEEeCCCCCCCCeEhhhhCCCCC--CCccEEEEECCCCEEEEECCC--------
Confidence 45556699999965 346666654111 1111 2222 111222222113889999653
Q ss_pred ceEEEEcCCCceEe---CC--CCCccccccceE-EE--CCEEEEEeeecCCCCCcccceEEEEECCCCceee-----ccc
Q 048803 185 SAMAYDVARDEWAS---LP--DMSRERDECKAV-FH--CGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGP-----VEE 251 (289)
Q Consensus 185 ~~~~yd~~~~~W~~---~~--~~~~~~~~~~~~-~~--~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~-----~~~ 251 (289)
..+.|+..+..... +. ..+......-+| .. ++++|++-|. ..+.||..+++-.. +..
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~----------~y~ry~~~~~~v~~~yP~~i~~ 141 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD----------KYWRYDEKTQKMDPGYPKLIET 141 (194)
T ss_pred EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC----------EEEEEeCCCccccCCCCcchhh
Confidence 36777665422211 11 111100111222 23 6899999774 46778765554321 110
Q ss_pred ccccCCCCCCceeeeeCCeEEEEeCceeeccc
Q 048803 252 DFMETATCPRSCAGVDSNDLYMCREGDVMALR 283 (289)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~~ 283 (289)
.-+..+....+++...++++|++-|..-..++
T Consensus 142 ~w~g~p~~idaa~~~~~~~~yfF~g~~y~~~d 173 (194)
T cd00094 142 DFPGVPDKVDAAFRWLDGYYYFFKGDQYWRFD 173 (194)
T ss_pred cCCCcCCCcceeEEeCCCcEEEEECCEEEEEe
Confidence 00001111222233334899999997665554
No 119
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=84.26 E-value=11 Score=33.87 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=32.2
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeC--CEEEEEeCcCCCCcccccceEEEEccCCe
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVG--PELVVIGGLDLTTWEASSSVFVFNIISAT 145 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~yd~~t~~ 145 (289)
.++|++|...+.|.. |+....... .++.++ ..|+++||. ...++.+||.+..
T Consensus 155 ~evYRlNLEqGrfL~--P~~~~~~~l----N~v~in~~hgLla~Gt~-------~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLN--PFETDSGEL----NVVSINEEHGLLACGTE-------DGVVEFWDPRDKS 208 (703)
T ss_pred cceEEEEcccccccc--ccccccccc----eeeeecCccceEEeccc-------CceEEEecchhhh
Confidence 689999999998743 222211111 333443 467888874 3557888887765
No 120
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.60 E-value=39 Score=31.72 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=49.2
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeC--CEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCcc
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVG--PELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRM 158 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~ 158 (289)
-.+.+||...-+=.+--..|.|.. ++.++++ |.|++.|+.+ .-++++++.+|++--.+-.=...|..
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~Q-----fscvavD~sGelV~AG~~d------~F~IfvWS~qTGqllDiLsGHEgPVs 482 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQ-----FSCVAVDPSGELVCAGAQD------SFEIFVWSVQTGQLLDILSGHEGPVS 482 (893)
T ss_pred CeEEeeeecccceeeeecCCCcee-----eeEEEEcCCCCEEEeeccc------eEEEEEEEeecCeeeehhcCCCCcce
Confidence 345566665433223333444443 2555565 8898888854 56789999999986554333324433
Q ss_pred ceeEEEecCCEEEEEcCCCCC
Q 048803 159 LFGCASDGDRTVYVAGGHDED 179 (289)
Q Consensus 159 ~~~~~~~~~~~iyv~GG~~~~ 179 (289)
. .+..-.+.+.+.|.++..
T Consensus 483 ~--l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 483 G--LSFSPDGSLLASGSWDKT 501 (893)
T ss_pred e--eEEccccCeEEeccccce
Confidence 2 232235667777777653
No 121
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=83.53 E-value=52 Score=33.01 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCC----------C--CCCccceeEEEecC-CEEEEEcCCCCCCcc
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADM----------P--GGRRMLFGCASDGD-RTVYVAGGHDEDKNA 182 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~----------~--~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~ 182 (289)
++.||+... ..+.+++||+.++....+..- . .......+.++.-+ +.|||....
T Consensus 694 ~g~LyVad~-------~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------ 760 (1057)
T PLN02919 694 NEKVYIAMA-------GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------ 760 (1057)
T ss_pred CCeEEEEEC-------CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------
Confidence 678888743 246688888877665432110 0 00111233444334 458988443
Q ss_pred cCceEEEEcCCCceEeCC--C--CCc----------------cccccceE-EECCEEEEEeeecCCCCCcccceEEEEEC
Q 048803 183 LKSAMAYDVARDEWASLP--D--MSR----------------ERDECKAV-FHCGKLLVIGGYSTNAQGRFERHAEAFDA 241 (289)
Q Consensus 183 ~~~~~~yd~~~~~W~~~~--~--~~~----------------~~~~~~~~-~~~~~l~~~gG~~~~~~~~~~~~v~~yd~ 241 (289)
.+.+.+||+.++.-..+. . .+. -....+++ .-+|.||+....+ +.|.+||+
T Consensus 761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N--------~rIrviD~ 832 (1057)
T PLN02919 761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN--------HKIKKLDP 832 (1057)
T ss_pred CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC--------CEEEEEEC
Confidence 246899998876532111 0 000 00111222 2367898886443 47999999
Q ss_pred CCCceeecccccc----------cCCCCCCceeeeeCCeEEEEeCce
Q 048803 242 AAQQWGPVEEDFM----------ETATCPRSCAGVDSNDLYMCREGD 278 (289)
Q Consensus 242 ~~~~W~~~~~~~~----------~~~~~~~~~~~~~~~~ly~~GG~~ 278 (289)
+++....+..... .....+...++.-+|+|||....+
T Consensus 833 ~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 833 ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 9887765543110 011123222334578899987644
No 122
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.36 E-value=28 Score=29.90 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=71.7
Q ss_pred eEEEEECCCCC--eEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe--EEeCCCCCCCCc
Q 048803 82 RITVLELGSGE--WSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT--WRRGADMPGGRR 157 (289)
Q Consensus 82 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~ 157 (289)
.++++|..+++ |+.-.+.. +. .....+..++.+|+.. ....++.+|..+++ |+.-.+.+....
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~~-~~----~~~~~v~~~~~v~~~s--------~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGGS-PY----YASPPVVGDGTVYVGT--------DDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred eEEEEECCCCcEEEEEecCCC-eE----EecCcEEcCcEEEEec--------CCCeEEEEEccCCcEEEEEecCCccccc
Confidence 68899996554 65333321 11 1123444555666542 24567788887654 874322110111
Q ss_pred cceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC--ceEeCCCCCcccccc--ceEEECCEEEEEeee-cCCCCCcc
Q 048803 158 MLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD--EWASLPDMSRERDEC--KAVFHCGKLLVIGGY-STNAQGRF 232 (289)
Q Consensus 158 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~--~~~~~~~~l~~~gG~-~~~~~~~~ 232 (289)
...... ..++.+|+.... . ...+..+|++++ .|+.-...+..+... ...+..+.|++-++. ... .
T Consensus 189 ~~~~~~-~~~~~vy~~~~~-~----~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~----~ 258 (370)
T COG1520 189 IYGSPA-IASGTVYVGSDG-Y----DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGS----Y 258 (370)
T ss_pred cccCce-eecceEEEecCC-C----cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEe----c
Confidence 111222 347777776332 1 125899999876 487432222221111 123444555555541 111 1
Q ss_pred cceEEEEECCCC--ceeecc
Q 048803 233 ERHAEAFDAAAQ--QWGPVE 250 (289)
Q Consensus 233 ~~~v~~yd~~~~--~W~~~~ 250 (289)
...+.++|..+. .|+.-.
T Consensus 259 ~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 259 GGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CCeEEEEEcCCCceEEEEec
Confidence 124777777655 587655
No 123
>PLN00181 protein SPA1-RELATED; Provisional
Probab=83.14 E-value=46 Score=32.12 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=62.1
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEE--eCCEEEEEeCcCCCCcccccceEEEEccCCeE-EeCCCCCCCCc
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSA--VGPELVVIGGLDLTTWEASSSVFVFNIISATW-RRGADMPGGRR 157 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~ 157 (289)
..+.+||..+++-. ..+...... -.+++. .++.+++.|+.+ ..+.+||..+..- ..+.. . ..
T Consensus 555 g~v~lWd~~~~~~~--~~~~~H~~~---V~~l~~~p~~~~~L~Sgs~D-------g~v~iWd~~~~~~~~~~~~-~-~~- 619 (793)
T PLN00181 555 GVVQVWDVARSQLV--TEMKEHEKR---VWSIDYSSADPTLLASGSDD-------GSVKLWSINQGVSIGTIKT-K-AN- 619 (793)
T ss_pred CeEEEEECCCCeEE--EEecCCCCC---EEEEEEcCCCCCEEEEEcCC-------CEEEEEECCCCcEEEEEec-C-CC-
Confidence 46777887765432 222111111 112222 245677777744 3477888876542 11211 1 11
Q ss_pred cceeEEE-ecCCEEEEEcCCCCCCcccCceEEEEcCCCc--eEeCCCCCccccc--cceEEECCEEEEEeeecCCCCCcc
Q 048803 158 MLFGCAS-DGDRTVYVAGGHDEDKNALKSAMAYDVARDE--WASLPDMSRERDE--CKAVFHCGKLLVIGGYSTNAQGRF 232 (289)
Q Consensus 158 ~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~--~~~~~~~~~l~~~gG~~~~~~~~~ 232 (289)
...... ..++.++++|+.+. .+..||..+.. ...+. .+.. ......++..++.++.++
T Consensus 620 -v~~v~~~~~~g~~latgs~dg------~I~iwD~~~~~~~~~~~~----~h~~~V~~v~f~~~~~lvs~s~D~------ 682 (793)
T PLN00181 620 -ICCVQFPSESGRSLAFGSADH------KVYYYDLRNPKLPLCTMI----GHSKTVSYVRFVDSSTLVSSSTDN------ 682 (793)
T ss_pred -eEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCCccceEec----CCCCCEEEEEEeCCCEEEEEECCC------
Confidence 111211 12567777776543 48899987542 11111 1111 112223666677776542
Q ss_pred cceEEEEECCC
Q 048803 233 ERHAEAFDAAA 243 (289)
Q Consensus 233 ~~~v~~yd~~~ 243 (289)
.+..||...
T Consensus 683 --~ikiWd~~~ 691 (793)
T PLN00181 683 --TLKLWDLSM 691 (793)
T ss_pred --EEEEEeCCC
Confidence 577888754
No 124
>PRK05137 tolB translocation protein TolB; Provisional
Probab=83.09 E-value=32 Score=30.35 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=54.2
Q ss_pred cceEEEEccCCeEEeCCCCCCCCccceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE
Q 048803 134 SSVFVFNIISATWRRGADMPGGRRMLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV 212 (289)
Q Consensus 134 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 212 (289)
..++++|+.+++.+.+...+. ... .....-+| +|++....++ ...++.+|++++.-..+..-+... .....
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g-~~~--~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~ 297 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG-MTF--APRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAID-TSPSY 297 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC-ccc--CcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCcc-CceeE
Confidence 679999999998877766552 211 12222245 4544432221 246888999988776664322111 11111
Q ss_pred EECCE-EEEEeeecCCCCCcccceEEEEECCCCceeecc
Q 048803 213 FHCGK-LLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVE 250 (289)
Q Consensus 213 ~~~~~-l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 250 (289)
.-+|+ |++.....+ ...++.+|..+.+.+.+.
T Consensus 298 spDG~~i~f~s~~~g------~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 298 SPDGSQIVFESDRSG------SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred cCCCCEEEEEECCCC------CCeEEEEECCCCCeEEee
Confidence 22444 443321111 125788887776666654
No 125
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.01 E-value=1.3 Score=38.16 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=35.1
Q ss_pred CCChHHHHHHHhhcCChhhHHHHHHHhhhHHhhhcChh
Q 048803 5 PDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPE 42 (289)
Q Consensus 5 ~~Lp~dl~~~il~~lp~~~l~~~~~v~k~W~~l~~~~~ 42 (289)
-.||.|++..+|+.|.-+++.+.+.+|+-|+.+..+..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 47999999999999999999999999999999987654
No 126
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=82.92 E-value=31 Score=30.03 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=56.0
Q ss_pred cceEEEEccCCeEEeCCCCCCCCccceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE
Q 048803 134 SSVFVFNIISATWRRGADMPGGRRMLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV 212 (289)
Q Consensus 134 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 212 (289)
..++++|..+++-+.+..... .. .+.+..-++ .|++.....+ ...++.+|+.++....+.......... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~-~~--~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~ 285 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG-MN--GAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTEP-SW 285 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC-Cc--cceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCCE-EE
Confidence 578999999887666554431 11 112222244 4655433221 246899999988777664332111111 11
Q ss_pred EECCE-EEEEeeecCCCCCcccceEEEEECCCCceeecc
Q 048803 213 FHCGK-LLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVE 250 (289)
Q Consensus 213 ~~~~~-l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 250 (289)
.-+++ |++.....+ ...++.+|..++++..+.
T Consensus 286 s~dg~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 286 SPDGKSIAFTSDRGG------SPQIYMMDADGGEVRRLT 318 (417)
T ss_pred CCCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 22454 444432221 126888999888877665
No 127
>PRK02889 tolB translocation protein TolB; Provisional
Probab=82.77 E-value=33 Score=30.24 Aligned_cols=147 Identities=15% Similarity=0.079 Sum_probs=73.8
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEE-eCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccc
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSA-VGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRML 159 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 159 (289)
..++++|..+++-..+...+..... .... .+.+|++....+ ...+++.+|..++..+.+..-. .....
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~-----~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~-~~~~~ 288 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSA-----PAWSPDGRTLAVALSRD-----GNSQIYTVNADGSGLRRLTQSS-GIDTE 288 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-----eEECCCCCEEEEEEccC-----CCceEEEEECCCCCcEECCCCC-CCCcC
Confidence 4588889888766665544321111 1222 234565543322 2467888998877766664422 11111
Q ss_pred eeEEEecCCE-EEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccce-EEECCEEEEEeeecCCCCCcccceEE
Q 048803 160 FGCASDGDRT-VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA-VFHCGKLLVIGGYSTNAQGRFERHAE 237 (289)
Q Consensus 160 ~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~l~~~gG~~~~~~~~~~~~v~ 237 (289)
....-+|+ |++...... ...++.+|..++..+.+... ....... ..-+|+..++...... . ..+.
T Consensus 289 --~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g---~--~~I~ 355 (427)
T PRK02889 289 --PFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRVGG---A--FKLY 355 (427)
T ss_pred --eEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEccCC---c--EEEE
Confidence 22223554 544432111 23578888877766655311 1111111 2235554334332221 1 2688
Q ss_pred EEECCCCceeeccc
Q 048803 238 AFDAAAQQWGPVEE 251 (289)
Q Consensus 238 ~yd~~~~~W~~~~~ 251 (289)
++|..+++...+..
T Consensus 356 v~d~~~g~~~~lt~ 369 (427)
T PRK02889 356 VQDLATGQVTALTD 369 (427)
T ss_pred EEECCCCCeEEccC
Confidence 99998888776653
No 128
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.57 E-value=33 Score=30.03 Aligned_cols=87 Identities=7% Similarity=0.024 Sum_probs=40.8
Q ss_pred EcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCce-----eecccccccCCCCCCcee
Q 048803 190 DVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQW-----GPVEEDFMETATCPRSCA 264 (289)
Q Consensus 190 d~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W-----~~~~~~~~~~~~~~~~~~ 264 (289)
|.-...|+.+......+.......-++.++++|... .+..-+.....| .++.. +........+
T Consensus 266 d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G---------~l~~S~d~G~~~~~~~f~~~~~---~~~~~~l~~v 333 (398)
T PLN00033 266 EPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG---------GLYVSKGTGLTEEDFDFEEADI---KSRGFGILDV 333 (398)
T ss_pred CCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc---------eEEEecCCCCcccccceeeccc---CCCCcceEEE
Confidence 333345887765443332222233578888877431 233333334444 44433 1111111122
Q ss_pred -eeeCCeEEEEeCceeecc--c-CCccc
Q 048803 265 -GVDSNDLYMCREGDVMAL--R-CNTWQ 288 (289)
Q Consensus 265 -~~~~~~ly~~GG~~~~~~--~-~~~w~ 288 (289)
..-++.++++|....... + ..+|+
T Consensus 334 ~~~~d~~~~a~G~~G~v~~s~D~G~tW~ 361 (398)
T PLN00033 334 GYRSKKEAWAAGGSGILLRSTDGGKSWK 361 (398)
T ss_pred EEcCCCcEEEEECCCcEEEeCCCCccee
Confidence 344778888886543222 2 26665
No 129
>PTZ00421 coronin; Provisional
Probab=82.40 E-value=35 Score=30.81 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=35.2
Q ss_pred CEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE--EECCEEEEEeeecCCCCCcccceEEEEECCCCc
Q 048803 168 RTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV--FHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQ 245 (289)
Q Consensus 168 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~ 245 (289)
+.+.+.|+.+. .+.++|+.+.+-. ..+.........+ ..++.+++.|+.++ .|.+||+.+++
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~--~~l~~h~~~V~sla~spdG~lLatgs~Dg--------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAV--EVIKCHSDQITSLEWNLDGSLLCTTSKDK--------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEE--EEEcCCCCceEEEEEECCCCEEEEecCCC--------EEEEEECCCCc
Confidence 35777776543 4888998876421 1111101111112 23677888877653 68899998765
No 130
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=82.04 E-value=29 Score=29.12 Aligned_cols=140 Identities=15% Similarity=0.057 Sum_probs=64.1
Q ss_pred eeEEEEECCC-CCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEcc-CCeEEeCCCCCCCCcc
Q 048803 81 YRITVLELGS-GEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNII-SATWRRGADMPGGRRM 158 (289)
Q Consensus 81 ~~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~ 158 (289)
..+.+||..+ ++++.+..++...... ..++.-.+..||+.+. . ...+..|+.. +++++.....+.. ..
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~--~l~~spd~~~lyv~~~-~------~~~i~~~~~~~~g~l~~~~~~~~~-~~ 81 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQ--PMVISPDKRHLYVGVR-P------EFRVLSYRIADDGALTFAAESPLP-GS 81 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCc--cEEECCCCCEEEEEEC-C------CCcEEEEEECCCCceEEeeeecCC-CC
Confidence 4667777753 5666555544322211 1111122445777543 1 3456667665 4566544433211 11
Q ss_pred ceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCc--eEeCCCCCccccccceEEE-CC-EEEEEeeecCCCCCccc
Q 048803 159 LFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDE--WASLPDMSRERDECKAVFH-CG-KLLVIGGYSTNAQGRFE 233 (289)
Q Consensus 159 ~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~-~~-~l~~~gG~~~~~~~~~~ 233 (289)
....+..-++ .+|+..-. + ..+..||..++. ...+...+.....+.++.. ++ .+|+.. .. .
T Consensus 82 p~~i~~~~~g~~l~v~~~~-~-----~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~-~~-------~ 147 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYN-A-----NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC-LK-------E 147 (330)
T ss_pred ceEEEECCCCCEEEEEEcC-C-----CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee-CC-------C
Confidence 2233332344 56666322 1 357778876431 1222222211122333332 44 455543 32 1
Q ss_pred ceEEEEECCCC
Q 048803 234 RHAEAFDAAAQ 244 (289)
Q Consensus 234 ~~v~~yd~~~~ 244 (289)
+.|.+||.+++
T Consensus 148 ~~v~v~d~~~~ 158 (330)
T PRK11028 148 DRIRLFTLSDD 158 (330)
T ss_pred CEEEEEEECCC
Confidence 47899998763
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=81.34 E-value=21 Score=31.68 Aligned_cols=101 Identities=13% Similarity=0.161 Sum_probs=49.7
Q ss_pred eeEEEEECCCC-CeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccc
Q 048803 81 YRITVLELGSG-EWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRML 159 (289)
Q Consensus 81 ~~~~~~d~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 159 (289)
..+.+||...- .-..++.++.-....+...+...-+++-.++||. .+.+-++|+.+-+=+.-..++......
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe-------astlsiWDLAapTprikaeltssapaC 512 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE-------ASTLSIWDLAAPTPRIKAELTSSAPAC 512 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-------cceeeeeeccCCCcchhhhcCCcchhh
Confidence 45666776432 1123333443322222223344457777888884 455778888776644334444222223
Q ss_pred eeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC
Q 048803 160 FGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD 194 (289)
Q Consensus 160 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 194 (289)
++.++..+.++....-.+. .|.++|+...
T Consensus 513 yALa~spDakvcFsccsdG------nI~vwDLhnq 541 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDG------NIAVWDLHNQ 541 (705)
T ss_pred hhhhcCCccceeeeeccCC------cEEEEEcccc
Confidence 3444333544433321111 3777887765
No 132
>PTZ00420 coronin; Provisional
Probab=81.18 E-value=45 Score=30.72 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=51.6
Q ss_pred EEEEEeCcCCCCcccccceEEEEccCCeEE-eCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCce
Q 048803 118 ELVVIGGLDLTTWEASSSVFVFNIISATWR-RGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEW 196 (289)
Q Consensus 118 ~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 196 (289)
.+++.||.+ ..+.+||..+.+=. .+. .+ ....+++...+|.+++.++.+. .+.+||+.+.+
T Consensus 139 ~iLaSgS~D-------gtIrIWDl~tg~~~~~i~-~~---~~V~SlswspdG~lLat~s~D~------~IrIwD~Rsg~- 200 (568)
T PTZ00420 139 YIMCSSGFD-------SFVNIWDIENEKRAFQIN-MP---KKLSSLKWNIKGNLLSGTCVGK------HMHIIDPRKQE- 200 (568)
T ss_pred eEEEEEeCC-------CeEEEEECCCCcEEEEEe-cC---CcEEEEEECCCCCEEEEEecCC------EEEEEECCCCc-
Confidence 455556643 44778898776521 111 11 1123344334777877766433 48999998763
Q ss_pred EeCCCCCcccccc---ceEE-----ECCEEEEEeeecCCCCCcccceEEEEECCC
Q 048803 197 ASLPDMSRERDEC---KAVF-----HCGKLLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 197 ~~~~~~~~~~~~~---~~~~-----~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
.+..+. .+.+. ..+. .+++.++.+|.+... ...|..||..+
T Consensus 201 -~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~----~R~VkLWDlr~ 249 (568)
T PTZ00420 201 -IASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN----MREMKLWDLKN 249 (568)
T ss_pred -EEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCC----ccEEEEEECCC
Confidence 221111 11111 1111 245566666655421 12588899874
No 133
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=81.13 E-value=28 Score=28.25 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=88.6
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEE---eCCCCCC--------CCccceeEEEecCCEEEEEcCCCCC
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWR---RGADMPG--------GRRMLFGCASDGDRTVYVAGGHDED 179 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~---~~~~~~~--------~~~~~~~~~~~~~~~iyv~GG~~~~ 179 (289)
..++.++.+|.--. .+..+.+||+.+++-. .++.-.. ........++. ..-|+|+-...+.
T Consensus 73 G~vVYngslYY~~~-------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvD-E~GLWvIYat~~~ 144 (250)
T PF02191_consen 73 GHVVYNGSLYYNKY-------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVD-ENGLWVIYATEDN 144 (250)
T ss_pred CeEEECCcEEEEec-------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEc-CCCEEEEEecCCC
Confidence 56777887775422 4688999999988744 4443221 11222345553 4446666544332
Q ss_pred CcccCceEEEEcCCC----ceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeeccccccc
Q 048803 180 KNALKSAMAYDVARD----EWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFME 255 (289)
Q Consensus 180 ~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 255 (289)
. ..-.+-+.|+++- +|.. +.+.. .-..+.++.|.||++....... ..-..+||..+++=..+......
T Consensus 145 ~-g~ivvskld~~tL~v~~tw~T--~~~k~-~~~naFmvCGvLY~~~s~~~~~----~~I~yafDt~t~~~~~~~i~f~~ 216 (250)
T PF02191_consen 145 N-GNIVVSKLDPETLSVEQTWNT--SYPKR-SAGNAFMVCGVLYATDSYDTRD----TEIFYAFDTYTGKEEDVSIPFPN 216 (250)
T ss_pred C-CcEEEEeeCcccCceEEEEEe--ccCch-hhcceeeEeeEEEEEEECCCCC----cEEEEEEECCCCceeceeeeecc
Confidence 1 1124566777653 5764 23322 2334556678999998765432 23468899998876665543222
Q ss_pred CCCCCCceee---eeCCeEEEEeCceeeccc
Q 048803 256 TATCPRSCAG---VDSNDLYMCREGDVMALR 283 (289)
Q Consensus 256 ~~~~~~~~~~---~~~~~ly~~GG~~~~~~~ 283 (289)
. . ....++ -.+++||+..-.....|+
T Consensus 217 ~-~-~~~~~l~YNP~dk~LY~wd~G~~v~Y~ 245 (250)
T PF02191_consen 217 P-Y-GNISMLSYNPRDKKLYAWDNGYQVTYD 245 (250)
T ss_pred c-c-CceEeeeECCCCCeEEEEECCeEEEEE
Confidence 2 1 122233 267999999876666553
No 134
>PRK00178 tolB translocation protein TolB; Provisional
Probab=80.84 E-value=39 Score=29.73 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=56.8
Q ss_pred ccceEEEEccCCeEEeCCCCCCCCccceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccce
Q 048803 133 SSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA 211 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 211 (289)
...++++|..+++-+.+...+. .. ......-+| +|++.....+ ...++.+|+.++....+...+..-... .
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g-~~--~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~ 293 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEG-LN--GAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAIDTEP-F 293 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCC-Cc--CCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCcCCe-E
Confidence 3579999999988877765442 11 112222244 4544322111 246899999999887665422111111 1
Q ss_pred EEECC-EEEEEeeecCCCCCcccceEEEEECCCCceeecc
Q 048803 212 VFHCG-KLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVE 250 (289)
Q Consensus 212 ~~~~~-~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 250 (289)
..-+| +|++.....+ ...++.+|..+++++.+.
T Consensus 294 ~spDg~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 294 WGKDGRTLYFTSDRGG------KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred ECCCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 12244 4555432221 136888898888877764
No 135
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=80.67 E-value=38 Score=29.55 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=53.7
Q ss_pred ccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc-eEeCCCCCccccccce
Q 048803 133 SSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE-WASLPDMSRERDECKA 211 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~ 211 (289)
-..+-+||..... .+..+|.......+....-+|+..++ +.++. .+..+|+.+.. ...+ +++... ....
T Consensus 368 d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat-~add~-----~V~lwDLRKl~n~kt~-~l~~~~-~v~s 437 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLAT-AADDG-----SVKLWDLRKLKNFKTI-QLDEKK-EVNS 437 (506)
T ss_pred CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEE-EecCC-----eEEEEEehhhccccee-eccccc-ccee
Confidence 3457788888766 44555521111112222225544444 32221 38889998764 2211 122111 2233
Q ss_pred EEE--CCEEEEEeeecCCCCCcccceEEEEECCCCceeecccc
Q 048803 212 VFH--CGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEED 252 (289)
Q Consensus 212 ~~~--~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 252 (289)
..+ .|+..+++|.+ -.|+.|+-.+.+|.++...
T Consensus 438 ~~fD~SGt~L~~~g~~--------l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGSD--------LQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEcCCCCeEEeecce--------eEEEEEecccccceeeehh
Confidence 333 36667776543 2577778889999999875
No 136
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.51 E-value=33 Score=28.66 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=44.4
Q ss_pred CCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEE---E
Q 048803 143 SATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKL---L 219 (289)
Q Consensus 143 t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l---~ 219 (289)
..+|+..|......+...-.++..++...+.||.++ .+.+||..++. ++..+.......++..+.... .
T Consensus 28 s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDe------tI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDE------TIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSH 99 (362)
T ss_pred ccceeeeccccccccccceeEEEecceeEeccCCCC------cEEEEeccchh--hhcceeccccceEEEEecCCcchhh
Confidence 345766666554333332222223665444455444 49999998762 233322222222222222222 3
Q ss_pred EEeeecCCCCCcccceEEEEECCCCceeecccc
Q 048803 220 VIGGYSTNAQGRFERHAEAFDAAAQQWGPVEED 252 (289)
Q Consensus 220 ~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 252 (289)
++.|.+. ..|.+++ .+.|..+..+
T Consensus 100 LlS~sdD-------G~i~iw~--~~~W~~~~sl 123 (362)
T KOG0294|consen 100 LLSGSDD-------GHIIIWR--VGSWELLKSL 123 (362)
T ss_pred eeeecCC-------CcEEEEE--cCCeEEeeee
Confidence 4444332 2466666 5778776654
No 137
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=77.92 E-value=39 Score=28.04 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=58.0
Q ss_pred EeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCC
Q 048803 114 AVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVAR 193 (289)
Q Consensus 114 ~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 193 (289)
-.+..=.++||.+ ..+.+||..++.=..+.....+.++.... ......+.||++.. +...|+..
T Consensus 62 F~d~~~~~~G~~d-------g~vr~~Dln~~~~~~igth~~~i~ci~~~---~~~~~vIsgsWD~~------ik~wD~R~ 125 (323)
T KOG1036|consen 62 FADESTIVTGGLD-------GQVRRYDLNTGNEDQIGTHDEGIRCIEYS---YEVGCVISGSWDKT------IKFWDPRN 125 (323)
T ss_pred ccCCceEEEeccC-------ceEEEEEecCCcceeeccCCCceEEEEee---ccCCeEEEcccCcc------EEEEeccc
Confidence 3444444566643 55889999998866666554333322211 23446788998764 77778775
Q ss_pred CceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCc
Q 048803 194 DEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQ 245 (289)
Q Consensus 194 ~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~ 245 (289)
.. .+.....+..-.+ ..+.+...++|+.+ ..+..||+.+..
T Consensus 126 ~~--~~~~~d~~kkVy~-~~v~g~~LvVg~~~--------r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 126 KV--VVGTFDQGKKVYC-MDVSGNRLVVGTSD--------RKVLIYDLRNLD 166 (323)
T ss_pred cc--cccccccCceEEE-EeccCCEEEEeecC--------ceEEEEEccccc
Confidence 11 1111222221222 23345556666543 268999987754
No 138
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=77.87 E-value=32 Score=27.06 Aligned_cols=103 Identities=12% Similarity=0.176 Sum_probs=47.4
Q ss_pred CEEEEEeCcCCCCcccccceEEEEccCCeEE-eCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc
Q 048803 117 PELVVIGGLDLTTWEASSSVFVFNIISATWR-RGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE 195 (289)
Q Consensus 117 ~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 195 (289)
+++++.|+. ...+.+||..+.+-. .+.... .........-++.+++.|..+. .+..||..+.+
T Consensus 105 ~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~------~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSR-------DKTIKVWDVETGKCLTTLRGHT---DWVNSVAFSPDGTFVASSSQDG------TIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecC-------CCeEEEEECCCcEEEEEeccCC---CcEEEEEEcCcCCEEEEEcCCC------cEEEEEccccc
Confidence 356666552 345788998755432 222111 1122233322345555544222 48888887543
Q ss_pred eEeCCCCCccccccceE-E-ECCEEEEEeeecCCCCCcccceEEEEECCCCc
Q 048803 196 WASLPDMSRERDECKAV-F-HCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQ 245 (289)
Q Consensus 196 W~~~~~~~~~~~~~~~~-~-~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~ 245 (289)
- +..+.........+ . -+++.+++++.+ +.+..||..+.+
T Consensus 169 ~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------~~i~i~d~~~~~ 210 (289)
T cd00200 169 C--VATLTGHTGEVNSVAFSPDGEKLLSSSSD--------GTIKLWDLSTGK 210 (289)
T ss_pred c--ceeEecCccccceEEECCCcCEEEEecCC--------CcEEEEECCCCc
Confidence 1 11111111111222 2 244455555542 258889987644
No 139
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.83 E-value=53 Score=29.02 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=69.5
Q ss_pred EEEeCCEEEEEeCcCCCCcccccceEEEEccCC-eEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEE
Q 048803 112 LSAVGPELVVIGGLDLTTWEASSSVFVFNIISA-TWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYD 190 (289)
Q Consensus 112 ~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 190 (289)
+...++.|++.||+++ .+-.||..+. .|. -++.+...-.. ....-+|.+++..|- +.+-+.|
T Consensus 161 ~~~~~~hivvtGsYDg-------~vrl~DtR~~~~~v--~elnhg~pVe~-vl~lpsgs~iasAgG-------n~vkVWD 223 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDG-------KVRLWDTRSLTSRV--VELNHGCPVES-VLALPSGSLIASAGG-------NSVKVWD 223 (487)
T ss_pred cccCCCeEEEecCCCc-------eEEEEEeccCCcee--EEecCCCceee-EEEcCCCCEEEEcCC-------CeEEEEE
Confidence 3445678999999873 3667787766 443 22221111111 222124444444331 2467777
Q ss_pred cCCCceEeCCCCCcccc-ccceE----E-ECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCcee
Q 048803 191 VARDEWASLPDMSRERD-ECKAV----F-HCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCA 264 (289)
Q Consensus 191 ~~~~~W~~~~~~~~~~~-~~~~~----~-~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 264 (289)
+.++.= +...+. .+..+ . -++.-.+.||.+. .+-+|| +..|+.+-....|.+ .-.+.
T Consensus 224 l~~G~q-----ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~--------~VKVfd--~t~~Kvv~s~~~~~p--vLsia 286 (487)
T KOG0310|consen 224 LTTGGQ-----LLTSMFNHNKTVTCLRLASDSTRLLSGSLDR--------HVKVFD--TTNYKVVHSWKYPGP--VLSIA 286 (487)
T ss_pred ecCCce-----ehhhhhcccceEEEEEeecCCceEeeccccc--------ceEEEE--ccceEEEEeeecccc--eeeEE
Confidence 765421 121111 11111 1 1446666777764 588999 566777665322221 11234
Q ss_pred eeeCCeEEEEeCceee
Q 048803 265 GVDSNDLYMCREGDVM 280 (289)
Q Consensus 265 ~~~~~~ly~~GG~~~~ 280 (289)
+..+++-.++|..|++
T Consensus 287 vs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 287 VSPDDQTVVIGMSNGL 302 (487)
T ss_pred ecCCCceEEEecccce
Confidence 4557888888887764
No 140
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.62 E-value=56 Score=29.17 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=52.6
Q ss_pred cceEEEEccCC-e-EEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccce
Q 048803 134 SSVFVFNIISA-T-WRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA 211 (289)
Q Consensus 134 ~~~~~yd~~t~-~-W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 211 (289)
..+.+||...+ + -+.+.... ... ++++..-++.+++.|+.+. .+.++|.++.+=... +..-....++
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~-~~v--~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~~--l~~hs~~is~ 293 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHS-TYV--TSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVRK--LKGHSDGISG 293 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCC-Cce--EEEEecCCCCEEEEecCCC------cEEEEeccCCeEEEe--eeccCCceEE
Confidence 45777887433 2 23344333 222 3344433678888888765 388899888432211 1211111222
Q ss_pred --EEECCEEEEEeeecCCCCCcccceEEEEECCCCce
Q 048803 212 --VFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQW 246 (289)
Q Consensus 212 --~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W 246 (289)
..-++.+++.+.++ +.+.+||..++.-
T Consensus 294 ~~f~~d~~~l~s~s~d--------~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYD--------GTIRVWDLETGSK 322 (456)
T ss_pred EEECCCCCEEEEcCCC--------ccEEEEECCCCce
Confidence 23477888887654 2589999888773
No 141
>PLN00181 protein SPA1-RELATED; Provisional
Probab=73.70 E-value=90 Score=30.17 Aligned_cols=101 Identities=14% Similarity=0.246 Sum_probs=51.7
Q ss_pred CEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEe-cCCEEEEEcCCCCCCcccCceEEEEcCCCc
Q 048803 117 PELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASD-GDRTVYVAGGHDEDKNALKSAMAYDVARDE 195 (289)
Q Consensus 117 ~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 195 (289)
+..++.|+.+ ..+.+||..+++-.. .+........+++.. .++.+++.|+.+. .+..||..+..
T Consensus 545 ~~~las~~~D-------g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFE-------GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCC-------CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCCc
Confidence 3455555543 457788987765322 111011112233332 2566777777654 38888887653
Q ss_pred e-EeCCCCCccccccceEE---ECCEEEEEeeecCCCCCcccceEEEEECCCC
Q 048803 196 W-ASLPDMSRERDECKAVF---HCGKLLVIGGYSTNAQGRFERHAEAFDAAAQ 244 (289)
Q Consensus 196 W-~~~~~~~~~~~~~~~~~---~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~ 244 (289)
- ..+. . ......+. -+++++++|+.++ .|..||..+.
T Consensus 610 ~~~~~~---~-~~~v~~v~~~~~~g~~latgs~dg--------~I~iwD~~~~ 650 (793)
T PLN00181 610 SIGTIK---T-KANICCVQFPSESGRSLAFGSADH--------KVYYYDLRNP 650 (793)
T ss_pred EEEEEe---c-CCCeEEEEEeCCCCCEEEEEeCCC--------eEEEEECCCC
Confidence 2 1111 1 11111121 2467777776542 6889998654
No 142
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=70.60 E-value=56 Score=26.51 Aligned_cols=133 Identities=15% Similarity=0.063 Sum_probs=72.1
Q ss_pred eeEEEEECCCCCeE---eCCCCCCC---C--CCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCC----eEEe
Q 048803 81 YRITVLELGSGEWS---ELPPIPGF---P--DGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISA----TWRR 148 (289)
Q Consensus 81 ~~~~~~d~~~~~W~---~~~~~~~~---~--~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~----~W~~ 148 (289)
..+..||..+++-. .+|..... . ........+++....|+|+-...... ..-.+-+.||.+- +|..
T Consensus 89 ~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~--g~ivvskld~~tL~v~~tw~T 166 (250)
T PF02191_consen 89 RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN--GNIVVSKLDPETLSVEQTWNT 166 (250)
T ss_pred ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC--CcEEEEeeCcccCceEEEEEe
Confidence 68889999988754 44332111 0 00111245677778899886544332 1233445676654 4653
Q ss_pred CCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCC-CCCccccccceEEE---CCEEEEEe
Q 048803 149 GADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLP-DMSRERDECKAVFH---CGKLLVIG 222 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~---~~~l~~~g 222 (289)
..+ .+....+..+ =|.+|++....... ....+.||+.+++=..+. +++.+....++... +.+||++-
T Consensus 167 --~~~-k~~~~naFmv--CGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 167 --SYP-KRSAGNAFMV--CGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred --ccC-chhhcceeeE--eeEEEEEEECCCCC--cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 233 1222222222 46789986655432 345688999988665432 23333334444443 67899985
No 143
>PTZ00421 coronin; Provisional
Probab=69.51 E-value=88 Score=28.33 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=36.3
Q ss_pred CEEEEEeCcCCCCcccccceEEEEccCCeEE-eCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc
Q 048803 117 PELVVIGGLDLTTWEASSSVFVFNIISATWR-RGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE 195 (289)
Q Consensus 117 ~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 195 (289)
+.+++.|+.+ ..+.+||..+++-. .+.... .. ..+++...++.+.+.|+.+. .+.+||+.++.
T Consensus 138 ~~iLaSgs~D-------gtVrIWDl~tg~~~~~l~~h~-~~--V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD-------MVVNVWDVERGKAVEVIKCHS-DQ--ITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC-------CEEEEEECCCCeEEEEEcCCC-Cc--eEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 3566666643 44788998876532 222111 11 22333323777888777554 48889998764
No 144
>PRK01742 tolB translocation protein TolB; Provisional
Probab=69.39 E-value=80 Score=27.84 Aligned_cols=140 Identities=11% Similarity=0.042 Sum_probs=67.3
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCC-EEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccc
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGP-ELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRML 159 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~ 159 (289)
..++++|..+++-+.+...+..... ....-++ .|++....+ ...+++.+|..++..+.+..-. .. .
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~~-----~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~-~~--~ 294 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNGA-----PAFSPDGSRLAFASSKD-----GVLNIYVMGANGGTPSQLTSGA-GN--N 294 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccCc-----eeECCCCCEEEEEEecC-----CcEEEEEEECCCCCeEeeccCC-CC--c
Confidence 3577888877765555544322111 1222344 455443222 1245888898888777665432 11 1
Q ss_pred eeEEEecCCE-EEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEE
Q 048803 160 FGCASDGDRT-VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238 (289)
Q Consensus 160 ~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~ 238 (289)
......-+|+ |++...... ...++.++..+..=+.+. . ... .....-+|+..++.+. +.+..
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~-~--~~~-~~~~SpDG~~ia~~~~---------~~i~~ 357 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVG-G--RGY-SAQISADGKTLVMING---------DNVVK 357 (429)
T ss_pred CCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEec-C--CCC-CccCCCCCCEEEEEcC---------CCEEE
Confidence 1222223554 554432222 135666776554333221 1 111 1112225553333322 14677
Q ss_pred EECCCCceeecc
Q 048803 239 FDAAAQQWGPVE 250 (289)
Q Consensus 239 yd~~~~~W~~~~ 250 (289)
+|..++++..+.
T Consensus 358 ~Dl~~g~~~~lt 369 (429)
T PRK01742 358 QDLTSGSTEVLS 369 (429)
T ss_pred EECCCCCeEEec
Confidence 899888887664
No 145
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=68.38 E-value=68 Score=26.60 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=57.4
Q ss_pred cceEEEEccCCeEEeCCCCCCCCccceeEEEec-CCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE
Q 048803 134 SSVFVFNIISATWRRGADMPGGRRMLFGCASDG-DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV 212 (289)
Q Consensus 134 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 212 (289)
..+-.+|..+++=.. .+....--..+.+..- +++.||.||++.. ....|..... .+..++.--....++
T Consensus 166 ~TCalWDie~g~~~~--~f~GH~gDV~slsl~p~~~ntFvSg~cD~~------aklWD~R~~~--c~qtF~ghesDINsv 235 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQ--VFHGHTGDVMSLSLSPSDGNTFVSGGCDKS------AKLWDVRSGQ--CVQTFEGHESDINSV 235 (343)
T ss_pred ceEEEEEcccceEEE--EecCCcccEEEEecCCCCCCeEEecccccc------eeeeeccCcc--eeEeecccccccceE
Confidence 346678888776332 1110011112222222 6789999998754 4555555442 111222111111111
Q ss_pred --EECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCC-ceeeeeCCeEEEEeCce
Q 048803 213 --FHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPR-SCAGVDSNDLYMCREGD 278 (289)
Q Consensus 213 --~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~ly~~GG~~ 278 (289)
.-+|.-|+.|.-+. ..-.||+..++=-.+-. ......+. ...+..-|+|+..|..|
T Consensus 236 ~ffP~G~afatGSDD~--------tcRlyDlRaD~~~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 236 RFFPSGDAFATGSDDA--------TCRLYDLRADQELAVYS--HDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred EEccCCCeeeecCCCc--------eeEEEeecCCcEEeeec--cCcccCCceeEEEcccccEEEeeecC
Confidence 12555565554332 45667777765322222 11111222 23445678887777543
No 146
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=67.36 E-value=75 Score=26.70 Aligned_cols=103 Identities=13% Similarity=0.266 Sum_probs=52.9
Q ss_pred cccceEEEEccCCe-EEeCCCCCCCCccceeEEEec-CCEEEEEcCCCCCCcccCceEEEEc-CCCceEeCCCCCccccc
Q 048803 132 ASSSVFVFNIISAT-WRRGADMPGGRRMLFGCASDG-DRTVYVAGGHDEDKNALKSAMAYDV-ARDEWASLPDMSRERDE 208 (289)
Q Consensus 132 ~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~-~~~~W~~~~~~~~~~~~ 208 (289)
..+++.+|....+. |+....+........+..-.- .++| |.++.+. ..+.+.. +.++|.+..-+-+--..
T Consensus 30 ~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~dr------nayVw~~~~~~~WkptlvLlRiNrA 102 (361)
T KOG1523|consen 30 NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHDR------NAYVWTQPSGGTWKPTLVLLRINRA 102 (361)
T ss_pred CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCCC------CccccccCCCCeeccceeEEEeccc
Confidence 35689999998888 998876652111111222111 2344 3333322 2455655 67789755443322111
Q ss_pred cceEE--ECCEEEEEeeecCCCCCcccceEEEEECCCCcee
Q 048803 209 CKAVF--HCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWG 247 (289)
Q Consensus 209 ~~~~~--~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~ 247 (289)
+..+- -++..|.+|+-. ..-.|..|+-+++=|.
T Consensus 103 At~V~WsP~enkFAVgSga------r~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 103 ATCVKWSPKENKFAVGSGA------RLISVCYYEQENDWWV 137 (361)
T ss_pred eeeEeecCcCceEEeccCc------cEEEEEEEecccceeh
Confidence 22222 255566666532 2336777777666553
No 147
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=65.57 E-value=82 Score=26.49 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=70.2
Q ss_pred EEEeCCEEEEEeCc----CCCCcccccceEEEEccCCeEEeCCC-CCCCCccceeEEEecCC-EEEEEcCCCCCCcccCc
Q 048803 112 LSAVGPELVVIGGL----DLTTWEASSSVFVFNIISATWRRGAD-MPGGRRMLFGCASDGDR-TVYVAGGHDEDKNALKS 185 (289)
Q Consensus 112 ~~~~~~~lyv~GG~----~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~ 185 (289)
.+.-++.+|+---. .....+....++++||....-+.+.. +. . ..+.+..-++ .+|+. +.....
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~--~--~NGla~SpDg~tly~a------DT~~~~ 186 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT--I--PNGLAFSPDGKTLYVA------DTPANR 186 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE--e--cCceEECCCCCEEEEE------eCCCCe
Confidence 44445666654322 11212345579999995433333344 22 2 2334443455 67776 233456
Q ss_pred eEEEEcCC------Cc--eEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCC
Q 048803 186 AMAYDVAR------DE--WASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETA 257 (289)
Q Consensus 186 ~~~yd~~~------~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~ 257 (289)
++.|+... ++ +.... ...+......+-.+|.+|+...-.+ ..|.+|++.-..=.++. +|.
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g-------~~v~~~~pdG~l~~~i~---lP~- 254 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGG-------GRVVRFNPDGKLLGEIK---LPV- 254 (307)
T ss_pred EEEEecCcccCccCCcceEEEcc-CCCCCCCceEEeCCCCEEEecccCC-------ceEEEECCCCcEEEEEE---CCC-
Confidence 77776653 11 11111 1122222233345788997443221 26999999844444443 232
Q ss_pred CCCCceeee--eCCeEEEEeCce
Q 048803 258 TCPRSCAGV--DSNDLYMCREGD 278 (289)
Q Consensus 258 ~~~~~~~~~--~~~~ly~~GG~~ 278 (289)
..+..+++. ..+.|||.....
T Consensus 255 ~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CCCccceEeCCCcCEEEEEecCC
Confidence 222222332 137888887654
No 148
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=64.80 E-value=60 Score=29.99 Aligned_cols=68 Identities=26% Similarity=0.434 Sum_probs=40.1
Q ss_pred EeCCEEEEEeCcCCCCcccccceEEEEccCCeEE--------eCCCCC-CCCccceeEEEecCCEEEEEcCCCCCCcccC
Q 048803 114 AVGPELVVIGGLDLTTWEASSSVFVFNIISATWR--------RGADMP-GGRRMLFGCASDGDRTVYVAGGHDEDKNALK 184 (289)
Q Consensus 114 ~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~--------~~~~~~-~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 184 (289)
+-++.+++-||.+ .++++||..+..=+ ...++. .+.-..++.+.--.+.++|.||...
T Consensus 127 ak~~~lvaSgGLD-------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek------ 193 (735)
T KOG0308|consen 127 AKNNELVASGGLD-------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK------ 193 (735)
T ss_pred ccCceeEEecCCC-------ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc------
Confidence 3467888889875 45777777655321 112333 2233334455433556888888754
Q ss_pred ceEEEEcCCC
Q 048803 185 SAMAYDVARD 194 (289)
Q Consensus 185 ~~~~yd~~~~ 194 (289)
++..||+.++
T Consensus 194 ~lr~wDprt~ 203 (735)
T KOG0308|consen 194 DLRLWDPRTC 203 (735)
T ss_pred ceEEeccccc
Confidence 3677777765
No 149
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=64.66 E-value=75 Score=25.75 Aligned_cols=154 Identities=12% Similarity=0.152 Sum_probs=72.0
Q ss_pred EEEeCCEEEEEeCcCCCCcccccceEEEEccC-CeEEeCCCCCCCCccc-eeEEEecCCEEEEEcCCCCCCcccCceEEE
Q 048803 112 LSAVGPELVVIGGLDLTTWEASSSVFVFNIIS-ATWRRGADMPGGRRML-FGCASDGDRTVYVAGGHDEDKNALKSAMAY 189 (289)
Q Consensus 112 ~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 189 (289)
+..-++.+++..-.. .. ........+.... .+|+.....+...... ......-+|.|+++.... ... .....+
T Consensus 114 i~~~~G~l~~~~~~~-~~-~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~ 188 (275)
T PF13088_consen 114 IQLPDGRLIAPYYHE-SG-GSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISR 188 (275)
T ss_dssp EEECTTEEEEEEEEE-SS-CEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEE
T ss_pred eEecCCCEEEEEeec-cc-cCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEE
Confidence 334477887762111 11 1233344455544 4598776553121222 222222478898886542 111 223334
Q ss_pred EcCC-CceEeCC--CCCccccccceEEE-CCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccC-CCCCCcee
Q 048803 190 DVAR-DEWASLP--DMSRERDECKAVFH-CGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMET-ATCPRSCA 264 (289)
Q Consensus 190 d~~~-~~W~~~~--~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~ 264 (289)
.... .+|+... .+|........+.+ +++++++..... ++..-.+..-.-...+|.....+.... ......++
T Consensus 189 S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~ 265 (275)
T PF13088_consen 189 STDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPD---GRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSL 265 (275)
T ss_dssp ESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSS---TSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEE
T ss_pred ECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCC---CCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCee
Confidence 4332 3799754 34444433333333 678888876211 112122333333467898776543222 11122244
Q ss_pred ee-eCCeEEE
Q 048803 265 GV-DSNDLYM 273 (289)
Q Consensus 265 ~~-~~~~ly~ 273 (289)
++ -|++|||
T Consensus 266 ~~~~dg~l~i 275 (275)
T PF13088_consen 266 TQLPDGKLYI 275 (275)
T ss_dssp EEEETTEEEE
T ss_pred EEeCCCcCCC
Confidence 44 4678886
No 150
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.58 E-value=99 Score=27.11 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=35.6
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEE
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYD 190 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 190 (289)
.+...++..|++|-. ..++.=+-.-.+|++++..+..+........+.++.++++|... .++.-+
T Consensus 141 ~v~f~~~~g~~vG~~--------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G-------~v~~S~ 205 (398)
T PLN00033 141 SISFKGKEGWIIGKP--------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG-------AIYVTS 205 (398)
T ss_pred eeEEECCEEEEEcCc--------eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEeccc-------eEEEEC
Confidence 444557788887531 22222222346798875432112112223333355677776321 133333
Q ss_pred cCCCceEeC
Q 048803 191 VARDEWASL 199 (289)
Q Consensus 191 ~~~~~W~~~ 199 (289)
-.-.+|+.+
T Consensus 206 D~G~tW~~~ 214 (398)
T PLN00033 206 NAGRNWKAA 214 (398)
T ss_pred CCCCCceEc
Confidence 334589876
No 151
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=64.53 E-value=75 Score=25.68 Aligned_cols=66 Identities=9% Similarity=0.256 Sum_probs=35.8
Q ss_pred eCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEe-cCCEEEEEcCCCCCCcccCceEEEEcCC
Q 048803 115 VGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASD-GDRTVYVAGGHDEDKNALKSAMAYDVAR 193 (289)
Q Consensus 115 ~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 193 (289)
..+.|++.|| -..++..|..+++.++.-.-. .. +.|..+.- .++.| +.|+-+. ++-..|.+|
T Consensus 125 ~enSi~~AgG--------D~~~y~~dlE~G~i~r~~rGH-tD-YvH~vv~R~~~~qi-lsG~EDG------tvRvWd~kt 187 (325)
T KOG0649|consen 125 SENSILFAGG--------DGVIYQVDLEDGRIQREYRGH-TD-YVHSVVGRNANGQI-LSGAEDG------TVRVWDTKT 187 (325)
T ss_pred CCCcEEEecC--------CeEEEEEEecCCEEEEEEcCC-cc-eeeeeeecccCcce-eecCCCc------cEEEEeccc
Confidence 3578888887 245788999999987653211 11 12222221 13333 2343322 367778887
Q ss_pred CceE
Q 048803 194 DEWA 197 (289)
Q Consensus 194 ~~W~ 197 (289)
.+=.
T Consensus 188 ~k~v 191 (325)
T KOG0649|consen 188 QKHV 191 (325)
T ss_pred ccee
Confidence 6543
No 152
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=63.96 E-value=95 Score=26.69 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=75.3
Q ss_pred eeEEEEECCCCC--eEeCCCC-CCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCC--eEEeCCCCCCC
Q 048803 81 YRITVLELGSGE--WSELPPI-PGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISA--TWRRGADMPGG 155 (289)
Q Consensus 81 ~~~~~~d~~~~~--W~~~~~~-~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~ 155 (289)
..++++|+.+.+ |+..... ...... .....+++||+- ..+ ..++++|..++ .|+.-..-.
T Consensus 78 G~i~A~d~~~g~~~W~~~~~~~~~~~~~-----~~~~~~G~i~~g-~~~-------g~~y~ld~~~G~~~W~~~~~~~-- 142 (370)
T COG1520 78 GNIFALNPDTGLVKWSYPLLGAVAQLSG-----PILGSDGKIYVG-SWD-------GKLYALDASTGTLVWSRNVGGS-- 142 (370)
T ss_pred CcEEEEeCCCCcEEecccCcCcceeccC-----ceEEeCCeEEEe-ccc-------ceEEEEECCCCcEEEEEecCCC--
Confidence 368899998877 8644332 011111 222337787764 322 26888998655 487544331
Q ss_pred CccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC--ceEeCCCC-CccccccceEEECCEEEEEeeecCCCCCcc
Q 048803 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD--EWASLPDM-SRERDECKAVFHCGKLLVIGGYSTNAQGRF 232 (289)
Q Consensus 156 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~-~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~ 232 (289)
++ ..+..++.++.+|+.- ....+.++|..+. .|+.-.+. ...+.....+..++.+|+.... . .
T Consensus 143 ~~-~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~-~---- 208 (370)
T COG1520 143 PY-YASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-Y-D---- 208 (370)
T ss_pred eE-EecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-C-c----
Confidence 11 2233333477777753 1235888888876 58733222 2222223333567777776432 1 1
Q ss_pred cceEEEEECCCC--ceee
Q 048803 233 ERHAEAFDAAAQ--QWGP 248 (289)
Q Consensus 233 ~~~v~~yd~~~~--~W~~ 248 (289)
..+..+|++++ .|+.
T Consensus 209 -~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 209 -GILYALNAEDGTLKWSQ 225 (370)
T ss_pred -ceEEEEEccCCcEeeee
Confidence 25888999765 5874
No 153
>PRK04922 tolB translocation protein TolB; Provisional
Probab=63.93 E-value=1e+02 Score=27.16 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=55.6
Q ss_pred ccceEEEEccCCeEEeCCCCCCCCccceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccce
Q 048803 133 SSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA 211 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 211 (289)
...++++|..+++-+.+...+. ... .....-+| +|++....++ ...++.+|+.+++-..+..-...... ..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g-~~~--~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~~~~-~~ 298 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRG-ING--APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGIDTE-PT 298 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCC-Ccc--CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCCccc-eE
Confidence 4568999999888777765542 111 12222244 4554432221 24689999998876655432211111 11
Q ss_pred EEECCE-EEEEeeecCCCCCcccceEEEEECCCCceeecc
Q 048803 212 VFHCGK-LLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVE 250 (289)
Q Consensus 212 ~~~~~~-l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 250 (289)
..-+|+ |++.....+ ...++.+|..+++.+.+.
T Consensus 299 ~spDG~~l~f~sd~~g------~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 299 WAPDGKSIYFTSDRGG------RPQIYRVAASGGSAERLT 332 (433)
T ss_pred ECCCCCEEEEEECCCC------CceEEEEECCCCCeEEee
Confidence 222554 444332221 135888898888877664
No 154
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=63.31 E-value=86 Score=26.00 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=51.9
Q ss_pred eCCEEEEEe-Cc-CCCC---cccccceEEEEccCCeEEeCCCCC---CCCccc-eeEEEec-C-----CEEEEEcCCCCC
Q 048803 115 VGPELVVIG-GL-DLTT---WEASSSVFVFNIISATWRRGADMP---GGRRML-FGCASDG-D-----RTVYVAGGHDED 179 (289)
Q Consensus 115 ~~~~lyv~G-G~-~~~~---~~~~~~~~~yd~~t~~W~~~~~~~---~~~~~~-~~~~~~~-~-----~~iyv~GG~~~~ 179 (289)
-.+.|+|+- |. +..+ .....++..||+.|++-.+.-.+| ..+... ....+.. + +.+|+.--.
T Consensus 10 ~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~--- 86 (287)
T PF03022_consen 10 ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG--- 86 (287)
T ss_dssp TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT---
T ss_pred CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC---
Confidence 357899983 43 2111 134678999999999854332222 112222 2333322 1 467876221
Q ss_pred CcccCceEEEEcCCC-ceEeCCCCCccccccceEEECCEEE
Q 048803 180 KNALKSAMAYDVARD-EWASLPDMSRERDECKAVFHCGKLL 219 (289)
Q Consensus 180 ~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~l~ 219 (289)
...+.+||+.++ .|+.......+.........+|+.+
T Consensus 87 ---~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~ 124 (287)
T PF03022_consen 87 ---GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESF 124 (287)
T ss_dssp ---TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEE
T ss_pred ---cCcEEEEEccCCcEEEEecCCcceeccccceeccCceE
Confidence 236999999997 5887765333333334444555544
No 155
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=62.64 E-value=89 Score=25.94 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=48.2
Q ss_pred cCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCc---cc-cccceE-EECCEEEEEeeecCCCCCcccceEEEEE
Q 048803 166 GDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSR---ER-DECKAV-FHCGKLLVIGGYSTNAQGRFERHAEAFD 240 (289)
Q Consensus 166 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~~-~~~~~~-~~~~~l~~~gG~~~~~~~~~~~~v~~yd 240 (289)
-.+.....||.++. +.+|++.+..=+...+..+ .+ .+.+.+ .+++.-.+.|.-+ .....+|
T Consensus 107 PSg~~VAcGGLdN~------Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--------~TCalWD 172 (343)
T KOG0286|consen 107 PSGNFVACGGLDNK------CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--------MTCALWD 172 (343)
T ss_pred CCCCeEEecCcCce------eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC--------ceEEEEE
Confidence 37888899998763 7889888653332222222 22 222222 2343333333211 1456778
Q ss_pred CCCCceeecccccccCCCCCCc--e--eeeeCCeEEEEeCceee
Q 048803 241 AAAQQWGPVEEDFMETATCPRS--C--AGVDSNDLYMCREGDVM 280 (289)
Q Consensus 241 ~~~~~W~~~~~~~~~~~~~~~~--~--~~~~~~~ly~~GG~~~~ 280 (289)
+++.+=...-. .+..- + +...+.+.|+-||.|..
T Consensus 173 ie~g~~~~~f~------GH~gDV~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 173 IETGQQTQVFH------GHTGDVMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred cccceEEEEec------CCcccEEEEecCCCCCCeEEecccccc
Confidence 88775332211 01100 1 11127888888887754
No 156
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=62.43 E-value=1.2e+02 Score=27.17 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=40.5
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEccCCeEEeC-CCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNIISATWRRG-ADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD 194 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 194 (289)
.+.+++.|+.+ ..|.++|..+.+-.+. +... ... .+++.-.++.+++.+.++. .+.+||..+.
T Consensus 257 ~g~~i~Sgs~D-------~tvriWd~~~~~~~~~l~~hs-~~i--s~~~f~~d~~~l~s~s~d~------~i~vwd~~~~ 320 (456)
T KOG0266|consen 257 DGNLLVSGSDD-------GTVRIWDVRTGECVRKLKGHS-DGI--SGLAFSPDGNLLVSASYDG------TIRVWDLETG 320 (456)
T ss_pred CCCEEEEecCC-------CcEEEEeccCCeEEEeeeccC-Cce--EEEEECCCCCEEEEcCCCc------cEEEEECCCC
Confidence 45788888754 4588999988654332 2222 221 2233323778888875533 4899999988
Q ss_pred ceE
Q 048803 195 EWA 197 (289)
Q Consensus 195 ~W~ 197 (289)
.-.
T Consensus 321 ~~~ 323 (456)
T KOG0266|consen 321 SKL 323 (456)
T ss_pred cee
Confidence 743
No 157
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=62.43 E-value=87 Score=26.26 Aligned_cols=84 Identities=10% Similarity=0.152 Sum_probs=41.4
Q ss_pred ccceEEEEccCCeEEeCCCCCCCCccceeEEEec--CCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccc
Q 048803 133 SSSVFVFNIISATWRRGADMPGGRRMLFGCASDG--DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECK 210 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~ 210 (289)
...+..||..|-+- -++..|...+......+-+ .++||+.|..++. +-.+|-.+++ .+..+...+.+..
T Consensus 237 Hp~~rlYdv~T~Qc-fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~------IklwDGVS~r--Cv~t~~~AH~gse 307 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQC-FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA------IKLWDGVSNR--CVRTIGNAHGGSE 307 (430)
T ss_pred CCceeEEeccceeE-eeecCcccccccceeEEEecCCccEEEEeccCCc------EEeeccccHH--HHHHHHhhcCCce
Confidence 45577889877652 1222232222221122212 6889999877653 6667766653 2223333443332
Q ss_pred eE--EE--CCEEEEEeeec
Q 048803 211 AV--FH--CGKLLVIGGYS 225 (289)
Q Consensus 211 ~~--~~--~~~l~~~gG~~ 225 (289)
.+ ++ ++|..+..|.+
T Consensus 308 vcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred eeeEEEccCCeEEeecCCc
Confidence 22 22 55555555544
No 158
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=61.83 E-value=1.1e+02 Score=26.89 Aligned_cols=177 Identities=14% Similarity=0.177 Sum_probs=88.9
Q ss_pred CCceeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeE-EeCCCCCCCC
Q 048803 78 TPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATW-RRGADMPGGR 156 (289)
Q Consensus 78 ~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~ 156 (289)
+|++.++++|...+.=-.+..+...-+-. ++-..++.+|++-- +.++-+++.|.+.-+= +-+..+..+.
T Consensus 403 e~~N~vYilDe~lnvvGkltGl~~gERIY----AvRf~gdv~yiVTf------rqtDPlfviDlsNPenPkvlGeLKIPG 472 (603)
T COG4880 403 EPVNAVYILDENLNVVGKLTGLAPGERIY----AVRFVGDVLYIVTF------RQTDPLFVIDLSNPENPKVLGELKIPG 472 (603)
T ss_pred CccceeEEEcCCCcEEEEEeccCCCceEE----EEEEeCceEEEEEE------eccCceEEEEcCCCCCCceeEEEecCC
Confidence 45688899998877766666654433322 55567788887732 2356677888765331 1123333222
Q ss_pred ccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCC-------------CceEeCCCCCccccccceEEECC--EEEEE
Q 048803 157 RMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVAR-------------DEWASLPDMSRERDECKAVFHCG--KLLVI 221 (289)
Q Consensus 157 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~-------------~~W~~~~~~~~~~~~~~~~~~~~--~l~~~ 221 (289)
.+.+-.-. .++++.=+|-.++. -++..||... +.|++ .-..|.+..++. +|+..
T Consensus 473 fS~YLHpi-gen~~lGvG~~~g~----vKiSLFdiSdl~~PkEv~~y~l~~~wsp------vf~dhHAFl~d~~~~ifFl 541 (603)
T COG4880 473 FSEYLHPI-GENRLLGVGAYQGG----VKISLFDISDLAAPKEVSNYTLSNAWSP------VFYDHHAFLYDPEAEIFFL 541 (603)
T ss_pred chhhcccc-CCCcEEEeecccCC----ceEEEEeccCCCCchhhhheehhhhcch------hhhccceeecCCcccEEEe
Confidence 11111121 24555555544321 2455566543 22331 123455555554 35555
Q ss_pred eeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCceeecccCCccc
Q 048803 222 GGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDVMALRCNTWQ 288 (289)
Q Consensus 222 gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~w~ 288 (289)
-.+.+ ..|..+.-..+- ..-.. .....-+ +.-.++.+|++||....-++.|.|+
T Consensus 542 Pay~~-------gyif~iedg~kl-~k~~e---~k~na~R--A~fi~dylY~vg~~ev~~ldenswe 595 (603)
T COG4880 542 PAYLG-------GYIFFIEDGSKL-RKRAE---RKLNADR--AFFIKDYLYLVGGNEVWKLDENSWE 595 (603)
T ss_pred cccCc-------cEEEEEecCcee-eehhh---hccccee--eEEecceEEEeccceeEEeccchHh
Confidence 43322 124444332111 11001 0011111 3346999999999988888878885
No 159
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=59.84 E-value=16 Score=19.66 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=15.7
Q ss_pred ceEEECCEEEEEeeecCCCCCcccceEEEEECCC
Q 048803 210 KAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 210 ~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
+.++.+++||+.+.. ..++++|+++
T Consensus 16 ~~~v~~g~vyv~~~d---------g~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGD---------GNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TT---------SEEEEEETT-
T ss_pred CCEEECCEEEEEcCC---------CEEEEEeCCC
Confidence 346678888887642 3689999864
No 160
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=56.69 E-value=1.3e+02 Score=26.04 Aligned_cols=136 Identities=8% Similarity=0.049 Sum_probs=69.6
Q ss_pred CCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCC-----CCCCC-ccceeEE
Q 048803 90 SGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGAD-----MPGGR-RMLFGCA 163 (289)
Q Consensus 90 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~-----~~~~~-~~~~~~~ 163 (289)
.+.|..+.. ..... ..++..+|++|++. ....++.++..- +-.++.+ +.... ....-.+
T Consensus 189 ~~~Wt~l~~-~~~~~-----~DIi~~kGkfYAvD--------~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLV 253 (373)
T PLN03215 189 GNVLKALKQ-MGYHF-----SDIIVHKGQTYALD--------SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFV 253 (373)
T ss_pred CCeeeEccC-CCcee-----eEEEEECCEEEEEc--------CCCeEEEEecCC-ceeeecceecccccCCcccCceeEE
Confidence 488998864 22222 26889999999983 234456666321 1112211 10000 0111122
Q ss_pred EecCCEEEEEcCCCCCC-------------cccCceEEEEcCCCceEeCCCCCcccc----ccce--------EEECCEE
Q 048803 164 SDGDRTVYVAGGHDEDK-------------NALKSAMAYDVARDEWASLPDMSRERD----ECKA--------VFHCGKL 218 (289)
Q Consensus 164 ~~~~~~iyv~GG~~~~~-------------~~~~~~~~yd~~~~~W~~~~~~~~~~~----~~~~--------~~~~~~l 218 (289)
. ..|.++++....... ...-.++..|.+..+|.++.++..... ..+. ...++.|
T Consensus 254 E-s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcI 332 (373)
T PLN03215 254 E-CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSI 332 (373)
T ss_pred E-ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEE
Confidence 2 257788887642110 011234556877889999988753210 0111 0124667
Q ss_pred EEEeeecCCCCCcccceEEEEECCCCceeeccc
Q 048803 219 LVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEE 251 (289)
Q Consensus 219 ~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 251 (289)
|.+... ...+||...++=..+..
T Consensus 333 YFtdd~----------~~~v~~~~dg~~~~~~~ 355 (373)
T PLN03215 333 YFTEDT----------MPKVFKLDNGNGSSIET 355 (373)
T ss_pred EEECCC----------cceEEECCCCCccceEe
Confidence 777422 35688888777554443
No 161
>PRK02889 tolB translocation protein TolB; Provisional
Probab=56.45 E-value=1.4e+02 Score=26.29 Aligned_cols=104 Identities=16% Similarity=0.094 Sum_probs=51.9
Q ss_pred ccceEEEEccCCeEEeCCCCCCCCccceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccce
Q 048803 133 SSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA 211 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 211 (289)
...++++|..+++=+.+...+. .. ...+..-+| +|++....+. ...++.+|..++..+.+..-. .......
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g-~~--~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~ 290 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKG-SN--SAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSS-GIDTEPF 290 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCC-Cc--cceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCC-CCCcCeE
Confidence 3569999998887655554441 11 122222244 4544433222 246888888877665553321 1111111
Q ss_pred EEECCE-EEEEeeecCCCCCcccceEEEEECCCCceeecc
Q 048803 212 VFHCGK-LLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVE 250 (289)
Q Consensus 212 ~~~~~~-l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 250 (289)
..-+|+ |++.....+ ...++.+|..+++.+.+.
T Consensus 291 wSpDG~~l~f~s~~~g------~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 291 FSPDGRSIYFTSDRGG------APQIYRMPASGGAAQRVT 324 (427)
T ss_pred EcCCCCEEEEEecCCC------CcEEEEEECCCCceEEEe
Confidence 223555 444322211 125777787777666554
No 162
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=55.33 E-value=1.4e+02 Score=25.98 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=78.6
Q ss_pred eeEEEEECCCC-----CeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe---EE-eCCC
Q 048803 81 YRITVLELGSG-----EWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT---WR-RGAD 151 (289)
Q Consensus 81 ~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~---W~-~~~~ 151 (289)
..++..|.... .|..+.+--... .+.+...++.+|+.-..+. ....+..++..+.. |+ .+.+
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~-----~~~v~~~~~~~yi~Tn~~a----~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGV-----EYYVDHHGDRLYILTNDDA----PNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS------EEEEEEETTEEEEEE-TT-----TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCce-----EEEEEccCCEEEEeeCCCC----CCcEEEEecccccccccceeEEcC
Confidence 67888898875 677665411111 1235556889998765322 34567888877665 66 4443
Q ss_pred CCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcC-CCceEeCCCCCccccccceEE---ECCEEEE-EeeecC
Q 048803 152 MPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVA-RDEWASLPDMSRERDECKAVF---HCGKLLV-IGGYST 226 (289)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~---~~~~l~~-~gG~~~ 226 (289)
-. .......+.. .++.|++..-.+ ....+.++|+. +..-..++.+... ...... -.+.+++ +.+...
T Consensus 323 ~~-~~~~l~~~~~-~~~~Lvl~~~~~----~~~~l~v~~~~~~~~~~~~~~p~~g--~v~~~~~~~~~~~~~~~~ss~~~ 394 (414)
T PF02897_consen 323 ED-EDVSLEDVSL-FKDYLVLSYREN----GSSRLRVYDLDDGKESREIPLPEAG--SVSGVSGDFDSDELRFSYSSFTT 394 (414)
T ss_dssp -S-SSEEEEEEEE-ETTEEEEEEEET----TEEEEEEEETT-TEEEEEEESSSSS--EEEEEES-TT-SEEEEEEEETTE
T ss_pred CC-CceeEEEEEE-ECCEEEEEEEEC----CccEEEEEECCCCcEEeeecCCcce--EEeccCCCCCCCEEEEEEeCCCC
Confidence 33 2223344444 477777763321 24578999998 3333333322211 111111 1344444 333322
Q ss_pred CCCCcccceEEEEECCCCceeecc
Q 048803 227 NAQGRFERHAEAFDAAAQQWGPVE 250 (289)
Q Consensus 227 ~~~~~~~~~v~~yd~~~~~W~~~~ 250 (289)
-..++.||+.+++-+.+.
T Consensus 395 ------P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 395 ------PPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ------EEEEEEEETTTTCEEEEE
T ss_pred ------CCEEEEEECCCCCEEEEE
Confidence 247999999999876654
No 163
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=54.06 E-value=34 Score=29.07 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=38.3
Q ss_pred CCEEEEEe--CcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecC--CEEEEEcCCCCCCcccCceEEEEc
Q 048803 116 GPELVVIG--GLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGD--RTVYVAGGHDEDKNALKSAMAYDV 191 (289)
Q Consensus 116 ~~~lyv~G--G~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~ 191 (289)
.++|||+- |..........++|+||+.|.+=...-++.. + ..+..+.-+ -.+|..-+. ...+.+||.
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~--~~Si~Vsqd~~P~L~~~~~~------~~~l~v~D~ 319 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-P--IDSIAVSQDDKPLLYALSAG------DGTLDVYDA 319 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-E--ESEEEEESSSS-EEEEEETT------TTEEEEEET
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-c--cceEEEccCCCcEEEEEcCC------CCeEEEEeC
Confidence 57899873 2222223467899999999987332223321 1 123444333 356665221 135899999
Q ss_pred CCCce
Q 048803 192 ARDEW 196 (289)
Q Consensus 192 ~~~~W 196 (289)
.|++-
T Consensus 320 ~tGk~ 324 (342)
T PF06433_consen 320 ATGKL 324 (342)
T ss_dssp TT--E
T ss_pred cCCcE
Confidence 98754
No 164
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=54.04 E-value=94 Score=26.23 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=57.9
Q ss_pred cceEEEEccCCeEE-eCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE
Q 048803 134 SSVFVFNIISATWR-RGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV 212 (289)
Q Consensus 134 ~~~~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 212 (289)
+.-.+.|..+++-- .--.||+.||.+ +|++|+.--. ...+..+|+++++.+.+..+|.-- .+.+
T Consensus 185 ~gG~vidv~s~evl~~GLsmPhSPRWh-------dgrLwvldsg------tGev~~vD~~~G~~e~Va~vpG~~--rGL~ 249 (335)
T TIGR03032 185 DGGCVIDIPSGEVVASGLSMPHSPRWY-------QGKLWLLNSG------RGELGYVDPQAGKFQPVAFLPGFT--RGLA 249 (335)
T ss_pred CCeEEEEeCCCCEEEcCccCCcCCcEe-------CCeEEEEECC------CCEEEEEcCCCCcEEEEEECCCCC--cccc
Confidence 34455788887642 334567667654 8999998332 335899999999999887777322 1223
Q ss_pred EECCEEEEEeeecCCCCCc------------ccceEEEEECCCCc
Q 048803 213 FHCGKLLVIGGYSTNAQGR------------FERHAEAFDAAAQQ 245 (289)
Q Consensus 213 ~~~~~l~~~gG~~~~~~~~------------~~~~v~~yd~~~~~ 245 (289)
.. |.+.++|-.....+.. ....+++.|+.++.
T Consensus 250 f~-G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~ 293 (335)
T TIGR03032 250 FA-GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGD 293 (335)
T ss_pred ee-CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCC
Confidence 33 6666666433211110 11357788887775
No 165
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.71 E-value=1.5e+02 Score=25.68 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=49.4
Q ss_pred cccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccce
Q 048803 132 ASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA 211 (289)
Q Consensus 132 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 211 (289)
...++..||+.+++ +++..+........+.+.+.++...++|-.. ..+..||..++.=-... +..--.+...
T Consensus 224 ~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~------g~l~~FD~r~~kl~g~~-~kg~tGsirs 295 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTK------GQLAKFDLRGGKLLGCG-LKGITGSIRS 295 (412)
T ss_pred cceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEeccc------chhheecccCceeeccc-cCCccCCcce
Confidence 46788999998765 3333332111112223333355544444433 34888998876432110 1100111222
Q ss_pred EEE--CCEEEEEeeecCCCCCcccceEEEEECCCCc
Q 048803 212 VFH--CGKLLVIGGYSTNAQGRFERHAEAFDAAAQQ 245 (289)
Q Consensus 212 ~~~--~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~ 245 (289)
..+ +.++...+|.+- .+-+||.++++
T Consensus 296 ih~hp~~~~las~GLDR--------yvRIhD~ktrk 323 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDR--------YVRIHDIKTRK 323 (412)
T ss_pred EEEcCCCceEEeeccce--------eEEEeecccch
Confidence 233 335788888753 47788887743
No 166
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=52.58 E-value=1.6e+02 Score=25.89 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCcccccc-ceEEE-CCEEEEEeeecCCCCCcccceEEEEECCCC
Q 048803 167 DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDEC-KAVFH-CGKLLVIGGYSTNAQGRFERHAEAFDAAAQ 244 (289)
Q Consensus 167 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~-~~~~~-~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~ 244 (289)
+|.|+..|-.+. .+-+||+++.. .++.+|. +.+. ....+ ++--|+.-+.+. ..|..+|....
T Consensus 358 DgLifgtgt~d~------~vkiwdlks~~--~~a~Fpg-ht~~vk~i~FsENGY~Lat~add-------~~V~lwDLRKl 421 (506)
T KOG0289|consen 358 DGLIFGTGTPDG------VVKIWDLKSQT--NVAKFPG-HTGPVKAISFSENGYWLATAADD-------GSVKLWDLRKL 421 (506)
T ss_pred CceEEeccCCCc------eEEEEEcCCcc--ccccCCC-CCCceeEEEeccCceEEEEEecC-------CeEEEEEehhh
Confidence 888888765543 48889999876 5666664 3322 22222 334444444432 24888998654
Q ss_pred ceeecccccccCCCCCCceeeeeCCeEEEEeCceeecccCC----ccc
Q 048803 245 QWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDVMALRCN----TWQ 288 (289)
Q Consensus 245 ~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~~~~----~w~ 288 (289)
+ .+.....+.......--+-.-|..++++|.+...|... .|+
T Consensus 422 ~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 422 K--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred c--ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 3 22222122111111111223477888888888777553 775
No 167
>PRK03629 tolB translocation protein TolB; Provisional
Probab=52.47 E-value=1.7e+02 Score=25.90 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=73.8
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..++.+|..+++.+++..-...... ....-.+..|++..... ...+++.+|+.++.-+.+.... ... .
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~----~~wSPDG~~I~f~s~~~-----g~~~Iy~~d~~~g~~~~lt~~~-~~~--~ 334 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTE----PTWFPDSQNLAYTSDQA-----GRPQVYKVNINGGAPQRITWEG-SQN--Q 334 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCc----eEECCCCCEEEEEeCCC-----CCceEEEEECCCCCeEEeecCC-CCc--c
Confidence 3688899988887777543321111 11112233455443221 1347888898887766664322 111 1
Q ss_pred eEEEecCCE-EEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEE
Q 048803 161 GCASDGDRT-VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAF 239 (289)
Q Consensus 161 ~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~y 239 (289)
.....-+|+ |++.+.... ...++.+|+++++++.+.... ....-...-+|+..++.+.... ...++..
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g----~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~-----~~~l~~~ 403 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGG----QQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGM-----GSVLNLV 403 (429)
T ss_pred CEEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCC-----ceEEEEE
Confidence 122222454 444433221 235888999999888775321 1111122346776666554432 1245666
Q ss_pred ECCCCceeec
Q 048803 240 DAAAQQWGPV 249 (289)
Q Consensus 240 d~~~~~W~~~ 249 (289)
+.....=..+
T Consensus 404 ~~~G~~~~~l 413 (429)
T PRK03629 404 STDGRFKARL 413 (429)
T ss_pred ECCCCCeEEC
Confidence 6654443334
No 168
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=51.53 E-value=84 Score=26.34 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=48.7
Q ss_pred CceEEEEcCCCceEeCCCCCccccccce-EE--ECCEEEEEeeecCCCCCcccceEEEEECCCCcee-ecccccccCCCC
Q 048803 184 KSAMAYDVARDEWASLPDMSRERDECKA-VF--HCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWG-PVEEDFMETATC 259 (289)
Q Consensus 184 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~-~~--~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~ 259 (289)
.....||.+|-+-..-+.+...+..... +- -.++||+.|..++ .|..+|-.++... .+... .....
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG--------~IklwDGVS~rCv~t~~~A--H~gse 307 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDG--------AIKLWDGVSNRCVRTIGNA--HGGSE 307 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCC--------cEEeeccccHHHHHHHHhh--cCCce
Confidence 4577888877654433333223322211 21 2689999998764 5788887776542 23321 11111
Q ss_pred CCceeeeeCCeEEEEeCceee
Q 048803 260 PRSCAGVDSNDLYMCREGDVM 280 (289)
Q Consensus 260 ~~~~~~~~~~~ly~~GG~~~~ 280 (289)
..++.+..|++..+..|.|..
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred eeeEEEccCCeEEeecCCcce
Confidence 222345678888888887753
No 169
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=51.52 E-value=1.9e+02 Score=26.24 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=51.7
Q ss_pred eCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEE-ecCCEEEEEcCCCCCCcccCceEEEEcCC
Q 048803 115 VGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCAS-DGDRTVYVAGGHDEDKNALKSAMAYDVAR 193 (289)
Q Consensus 115 ~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 193 (289)
-++.-+++||.+ ..+++|.+..+.-.+...+. ..+....... .-++..++.|-.. ..+..||.++
T Consensus 453 ~~~~~vaVGG~D-------gkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~------rkvv~yd~~s 518 (603)
T KOG0318|consen 453 PDGSEVAVGGQD-------GKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDAS------RKVVLYDVAS 518 (603)
T ss_pred CCCCEEEEeccc-------ceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccC------CcEEEEEccc
Confidence 345566677744 23788877665533332222 1111222222 1255555554322 2477777765
Q ss_pred C-----ceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCC
Q 048803 194 D-----EWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 194 ~-----~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
+ .|. +...|-..-+-.-+++++..|+.+. .|.+|+.+.
T Consensus 519 ~~~~~~~w~----FHtakI~~~aWsP~n~~vATGSlDt--------~Viiysv~k 561 (603)
T KOG0318|consen 519 REVKTNRWA----FHTAKINCVAWSPNNKLVATGSLDT--------NVIIYSVKK 561 (603)
T ss_pred Cceecceee----eeeeeEEEEEeCCCceEEEeccccc--------eEEEEEccC
Confidence 5 342 1122211222223788888887753 688898765
No 170
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=51.31 E-value=1.5e+02 Score=25.18 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred ceeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeC---CCCCCCC
Q 048803 80 VYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRG---ADMPGGR 156 (289)
Q Consensus 80 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~ 156 (289)
...+..|+...++-....+...+....+-+...---+...|++.-.+ .+-.++.||+..++.+++ ..||..-
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~-----stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN-----STVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC-----CEEEEEEEcCCCceEEEeeeeccCcccc
Q ss_pred ccceeEEEec----CCEEEEEcCCCCCCcccCceEEE--EcCCCceEeCCCCCccccccceEEE--CCEEEEEeeecCCC
Q 048803 157 RMLFGCASDG----DRTVYVAGGHDEDKNALKSAMAY--DVARDEWASLPDMSRERDECKAVFH--CGKLLVIGGYSTNA 228 (289)
Q Consensus 157 ~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~y--d~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gG~~~~~ 228 (289)
.....++.+. +..+|+. .+..+.+.+| |+.++.-+.+...+..-.......+ +|++.++.+.+..+
T Consensus 241 ~g~~~~aaIhis~dGrFLYas------NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYAS------NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred CCCCceeEEEECCCCCEEEEe------cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Q ss_pred CCcccceEEEEECCCCceeeccc
Q 048803 229 QGRFERHAEAFDAAAQQWGPVEE 251 (289)
Q Consensus 229 ~~~~~~~v~~yd~~~~~W~~~~~ 251 (289)
- .++.-|.+|++-..+..
T Consensus 315 i-----~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 315 I-----TVFERDKETGRLTLLGR 332 (346)
T ss_pred E-----EEEEEcCCCceEEeccc
No 171
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=49.89 E-value=1.2e+02 Score=23.40 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=48.4
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE 195 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 195 (289)
++++.++-|. ....+..||.....-..+ +...+.. ..-.-+|+..+++|..+.. ..+..||.. +
T Consensus 71 g~~favi~g~------~~~~v~lyd~~~~~i~~~---~~~~~n~--i~wsP~G~~l~~~g~~n~~---G~l~~wd~~--~ 134 (194)
T PF08662_consen 71 GNEFAVIYGS------MPAKVTLYDVKGKKIFSF---GTQPRNT--ISWSPDGRFLVLAGFGNLN---GDLEFWDVR--K 134 (194)
T ss_pred CCEEEEEEcc------CCcccEEEcCcccEeEee---cCCCceE--EEECCCCCEEEEEEccCCC---cEEEEEECC--C
Confidence 5567666552 234788999864333333 3222222 2322378888888875432 358889988 4
Q ss_pred eEeCCCCCccccccceEEECCEEEEEeee
Q 048803 196 WASLPDMSRERDECKAVFHCGKLLVIGGY 224 (289)
Q Consensus 196 W~~~~~~~~~~~~~~~~~~~~~l~~~gG~ 224 (289)
...+.....+......-.-+|+.++....
T Consensus 135 ~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 135 KKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 44443333222111111236676665543
No 172
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=49.45 E-value=28 Score=28.38 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCCChHHHHHHHhhcCC-hhhHHHHHHHhhhHHhhhc
Q 048803 4 IPDLPNEIALECLSRVS-YKQFATISSVCKGWKSEIS 39 (289)
Q Consensus 4 ~~~Lp~dl~~~il~~lp-~~~l~~~~~v~k~W~~l~~ 39 (289)
+.+||.+++.+||.|+| -++|..++-|-..-..++.
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 56899999999999997 4556666555444333333
No 173
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.34 E-value=2.4e+02 Score=26.90 Aligned_cols=96 Identities=15% Similarity=0.225 Sum_probs=53.6
Q ss_pred cCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceE--EECCEEEEEeeecCCCCCcccceEEEEECCC
Q 048803 166 GDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV--FHCGKLLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 166 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
-+|.+.+.|+-++ ++-++|..+.--. ......-.+++++ ...+++.+....++ .|-++|..+
T Consensus 360 pDgq~iaTG~eDg------KVKvWn~~SgfC~--vTFteHts~Vt~v~f~~~g~~llssSLDG--------tVRAwDlkR 423 (893)
T KOG0291|consen 360 PDGQLIATGAEDG------KVKVWNTQSGFCF--VTFTEHTSGVTAVQFTARGNVLLSSSLDG--------TVRAWDLKR 423 (893)
T ss_pred CCCcEEEeccCCC------cEEEEeccCceEE--EEeccCCCceEEEEEEecCCEEEEeecCC--------eEEeeeecc
Confidence 3788888888654 3777776654211 1112222223332 23566666555543 578888866
Q ss_pred C-ceeecccccccCCCCCCceeeeeC--CeEEEEeCceeecc
Q 048803 244 Q-QWGPVEEDFMETATCPRSCAGVDS--NDLYMCREGDVMAL 282 (289)
Q Consensus 244 ~-~W~~~~~~~~~~~~~~~~~~~~~~--~~ly~~GG~~~~~~ 282 (289)
- ..+.... |. +....|+++ | |.|.+.|+.|.+.+
T Consensus 424 YrNfRTft~---P~-p~Qfscvav-D~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 424 YRNFRTFTS---PE-PIQFSCVAV-DPSGELVCAGAQDSFEI 460 (893)
T ss_pred cceeeeecC---CC-ceeeeEEEE-cCCCCEEEeeccceEEE
Confidence 3 4555554 22 222235554 6 89999999887655
No 174
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=48.92 E-value=1.5e+02 Score=24.30 Aligned_cols=191 Identities=14% Similarity=0.151 Sum_probs=73.7
Q ss_pred CCCCeE--eCCCCCCCCCCCCc---eeEEEEeCCEEEEEeCcCCCCcccccce--EEEEc-----cCCeEEeCCCCCCCC
Q 048803 89 GSGEWS--ELPPIPGFPDGLPL---FCQLSAVGPELVVIGGLDLTTWEASSSV--FVFNI-----ISATWRRGADMPGGR 156 (289)
Q Consensus 89 ~~~~W~--~~~~~~~~~~~~~~---~~~~~~~~~~lyv~GG~~~~~~~~~~~~--~~yd~-----~t~~W~~~~~~~~~~ 156 (289)
.++.|+ .++.+|.......+ -++.+.+++.=|.+|--++.. ...++ ..|.- ..-.=+.++.-- .+
T Consensus 113 ~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~--sPRe~G~~yfs~~~~sp~~~vrr~i~sey-~~ 189 (367)
T PF12217_consen 113 HDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV--SPRELGFLYFSDAFASPGVFVRRIIPSEY-ER 189 (367)
T ss_dssp TTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SS--SS-EEEEEEETTTTT-TT--EEEE--GGG--T
T ss_pred ccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCC--CcceeeEEEecccccCCcceeeeechhhh-cc
Confidence 567785 56666552221111 246677888778887544332 22222 22211 111112222211 12
Q ss_pred ccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCcc-ccccceEEECCEEEEEeeecCC---C----
Q 048803 157 RMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRE-RDECKAVFHCGKLLVIGGYSTN---A---- 228 (289)
Q Consensus 157 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~l~~~gG~~~~---~---- 228 (289)
...--+.-..+|.+|++-.........+.+..-+..-..|+.+.-+..- +...-.+..++.||++|..-.. +
T Consensus 190 ~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~ 269 (367)
T PF12217_consen 190 NASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEP 269 (367)
T ss_dssp TEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SSTT--
T ss_pred ccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccccccccccCCC
Confidence 1122233335999999854333223445566666667789866322222 2233345689999999964221 1
Q ss_pred CCccc-----ceEE-----EEECCCCceeecccccccC----CCCCCceeeeeCCeEE-EEeCceeecc
Q 048803 229 QGRFE-----RHAE-----AFDAAAQQWGPVEEDFMET----ATCPRSCAGVDSNDLY-MCREGDVMAL 282 (289)
Q Consensus 229 ~~~~~-----~~v~-----~yd~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~ly-~~GG~~~~~~ 282 (289)
+.++. .-+. .+.++.-+|..+....-.. ..+....+++.++-|| ++||.|....
T Consensus 270 D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~~np 338 (367)
T PF12217_consen 270 DNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDFFNP 338 (367)
T ss_dssp ---SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S---
T ss_pred cccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcccCCc
Confidence 11111 0011 1244555777776543221 1122224566777764 6788776543
No 175
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.19 E-value=1.6e+02 Score=24.60 Aligned_cols=173 Identities=9% Similarity=0.050 Sum_probs=87.7
Q ss_pred cCCCCCeEEEEeeeeccccCCC-----CCCCCCCCceeEEEEECCCCC----eEeCCCCCCCCCCCCceeEEEEeCCEEE
Q 048803 50 TRSSEQLLFMTQARVDQSRKSG-----VPKRFATPVYRITVLELGSGE----WSELPPIPGFPDGLPLFCQLSAVGPELV 120 (289)
Q Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~~~ly 120 (289)
+...+..+|++|--..+....+ .-..+.+.=.+++.||...++ |++--.-+..-.+-..--.---++++|+
T Consensus 42 V~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LL 121 (339)
T PF09910_consen 42 VEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLL 121 (339)
T ss_pred eeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEE
Confidence 3345667777765543321110 001122222578899988776 5433322221111100000001256777
Q ss_pred EEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCce--Ee
Q 048803 121 VIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEW--AS 198 (289)
Q Consensus 121 v~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W--~~ 198 (289)
+.=+ ++ ...--+|..|..+++-+.+.+-|. + .+.-+ ++..+|-+ .+-....+.+.+||+.+++| +.
T Consensus 122 lAR~-DG---h~nLGvy~ldr~~g~~~~L~~~ps-~---KG~~~-~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~ 189 (339)
T PF09910_consen 122 LARA-DG---HANLGVYSLDRRTGKAEKLSSNPS-L---KGTLV-HDYACFGI---NNFHKGVSGIHCLDLISGKWVIES 189 (339)
T ss_pred EEec-CC---cceeeeEEEcccCCceeeccCCCC-c---CceEe-eeeEEEec---cccccCCceEEEEEccCCeEEEEe
Confidence 6521 21 123457888999999888876662 2 12222 23333322 33233467899999999999 43
Q ss_pred CCCC------C-ccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCC
Q 048803 199 LPDM------S-RERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQ 244 (289)
Q Consensus 199 ~~~~------~-~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~ 244 (289)
.+.. + ..+....++...+++|.+-+ ..+.+.||..+
T Consensus 190 f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~r----------GGi~vgnP~~~ 232 (339)
T PF09910_consen 190 FDVSLSVDGGPVIRPELGAMASAYNRLFAFVR----------GGIFVGNPYNG 232 (339)
T ss_pred cccccCCCCCceEeeccccEEEEeeeEEEEEe----------ccEEEeCCCCC
Confidence 3211 1 12234445667788887743 24667777643
No 176
>smart00284 OLF Olfactomedin-like domains.
Probab=47.74 E-value=1.5e+02 Score=24.12 Aligned_cols=133 Identities=16% Similarity=0.058 Sum_probs=68.1
Q ss_pred eeEEEEECCCCCeEeCCCCCCCC----CC----CCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCC----eEEe
Q 048803 81 YRITVLELGSGEWSELPPIPGFP----DG----LPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISA----TWRR 148 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~----~~----~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~----~W~~ 148 (289)
..+..||..+++-.....+|... .. ......+++..+.|+|+=...+.. ..-.+-+.||.|- +|..
T Consensus 94 ~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~--g~ivvSkLnp~tL~ve~tW~T 171 (255)
T smart00284 94 HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA--GKIVISKLNPATLTIENTWIT 171 (255)
T ss_pred ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC--CCEEEEeeCcccceEEEEEEc
Confidence 57889999988764333333321 00 111235677788888884433221 1222345677654 4654
Q ss_pred CCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeC-CCCCccccccceEEE---CCEEEEEe
Q 048803 149 GADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASL-PDMSRERDECKAVFH---CGKLLVIG 222 (289)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~~~~~~~~---~~~l~~~g 222 (289)
..+ .+....+..+ =|.+|++-.... ......+.||+.+++=..+ -+++.....+++.-. +.+||++-
T Consensus 172 --~~~-k~sa~naFmv--CGvLY~~~s~~~--~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 172 --TYN-KRSASNAFMI--CGILYVTRSLGS--KGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred --CCC-cccccccEEE--eeEEEEEccCCC--CCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 222 1111222222 367899853221 2234578899998763322 123333333444433 67899884
No 177
>PRK04043 tolB translocation protein TolB; Provisional
Probab=47.53 E-value=2e+02 Score=25.40 Aligned_cols=150 Identities=7% Similarity=0.021 Sum_probs=81.6
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
.+++.+|..++.++++...+..... ....-.+.+|++..... ...+++++|..+++.+++..-. .. ..
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~~----p~~SPDG~~I~F~Sdr~-----g~~~Iy~~dl~~g~~~rlt~~g--~~-~~ 324 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDVN----GNFVEDDKRIVFVSDRL-----GYPNIFMKKLNSGSVEQVVFHG--KN-NS 324 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccCc----cEECCCCCEEEEEECCC-----CCceEEEEECCCCCeEeCccCC--Cc-Cc
Confidence 5789999999999888765431111 12333455787775432 2467999999998887765432 11 12
Q ss_pred eEEEecCCEEEEEcCCCCCC--cccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEE
Q 048803 161 GCASDGDRTVYVAGGHDEDK--NALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~ 238 (289)
..+. -+..|.+.....+.. .....++.+|++++.++.+..-. ....-...-||+..++...... ...+..
T Consensus 325 ~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~-----~~~L~~ 396 (419)
T PRK04043 325 SVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQFPRFSSDGGSIMFIKYLGN-----QSALGI 396 (419)
T ss_pred eECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcCCeEECCCCCEEEEEEccCC-----cEEEEE
Confidence 2222 133444433322111 02247899999999988775532 1111122335654444332221 135777
Q ss_pred EECCCCceeecc
Q 048803 239 FDAAAQQWGPVE 250 (289)
Q Consensus 239 yd~~~~~W~~~~ 250 (289)
++.+.+.=..++
T Consensus 397 ~~l~g~~~~~l~ 408 (419)
T PRK04043 397 IRLNYNKSFLFP 408 (419)
T ss_pred EecCCCeeEEee
Confidence 887665444443
No 178
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=46.81 E-value=1.1e+02 Score=22.17 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=31.1
Q ss_pred CceEEEEcCCCc---eEeCCCCCccccccceEE---ECCEEEEEeeecCCCCCcccceEEEEECCCCc--eee
Q 048803 184 KSAMAYDVARDE---WASLPDMSRERDECKAVF---HCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQ--WGP 248 (289)
Q Consensus 184 ~~~~~yd~~~~~---W~~~~~~~~~~~~~~~~~---~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~--W~~ 248 (289)
+.+..||.+.|. ++++++ +........ ..+.+.++||.- .|.-||.+.++ |..
T Consensus 73 t~llaYDV~~N~d~Fyke~~D---Gvn~i~~g~~~~~~~~l~ivGGnc---------si~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 73 TSLLAYDVENNSDLFYKEVPD---GVNAIVIGKLGDIPSPLVIVGGNC---------SIQGFDYEGNEIFWTV 133 (136)
T ss_pred ceEEEEEcccCchhhhhhCcc---ceeEEEEEecCCCCCcEEEECceE---------EEEEeCCCCcEEEEEe
Confidence 458999999885 444432 221111112 246688888862 57888876553 554
No 179
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=46.09 E-value=1.4e+02 Score=23.02 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=52.0
Q ss_pred CEEEEEeCcCCCCcccccceEEEEccCCeE---EeCCCCCCCC--ccceeEEEec-CCEEEEEcCCCCCCcccCceEEEE
Q 048803 117 PELVVIGGLDLTTWEASSSVFVFNIISATW---RRGADMPGGR--RMLFGCASDG-DRTVYVAGGHDEDKNALKSAMAYD 190 (289)
Q Consensus 117 ~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W---~~~~~~~~~~--~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd 190 (289)
+++|++-| +..|+|+..+... +.+.....++ ...-++.... ++++|++.|. ..+.||
T Consensus 63 ~~~yfFkg---------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~ 125 (194)
T cd00094 63 GKIYFFKG---------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYD 125 (194)
T ss_pred CEEEEECC---------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEe
Confidence 78999954 4577887654222 1111111111 1111122212 6899999662 467787
Q ss_pred cCCCceEeC---------CCCCccccccceEEE-CCEEEEEeeecCCCCCcccceEEEEECCCCc
Q 048803 191 VARDEWASL---------PDMSRERDECKAVFH-CGKLLVIGGYSTNAQGRFERHAEAFDAAAQQ 245 (289)
Q Consensus 191 ~~~~~W~~~---------~~~~~~~~~~~~~~~-~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~ 245 (289)
..+++-..- +.+|.. --++... ++++|++-|. ..+.||..+++
T Consensus 126 ~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g~----------~y~~~d~~~~~ 178 (194)
T cd00094 126 EKTQKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKGD----------QYWRFDPRSKE 178 (194)
T ss_pred CCCccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEECC----------EEEEEeCccce
Confidence 665543211 012211 1122223 3889999764 57999988766
No 180
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=45.57 E-value=1.7e+02 Score=23.99 Aligned_cols=161 Identities=16% Similarity=0.202 Sum_probs=73.0
Q ss_pred EEEEeCCEEEEEeCc-CCCCcccccceEEEE---ccCCeEEe--CCCCCC------CCccceeEEEecCCEEEEEcCCCC
Q 048803 111 QLSAVGPELVVIGGL-DLTTWEASSSVFVFN---IISATWRR--GADMPG------GRRMLFGCASDGDRTVYVAGGHDE 178 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~-~~~~~~~~~~~~~yd---~~t~~W~~--~~~~~~------~~~~~~~~~~~~~~~iyv~GG~~~ 178 (289)
++.+++++||.+=-. +-.+ ......+.|+ ...+.|+. ++..+. +....|+.+.+ ++.=|.+|=...
T Consensus 79 SMGv~~NRLfa~iEtR~~a~-~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i-~~~~fA~GyHnG 156 (367)
T PF12217_consen 79 SMGVVGNRLFAVIETRTVAS-NKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATI-DDNQFAVGYHNG 156 (367)
T ss_dssp -EEEETTEEEEEEEEEETTT---EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE--SSS-EEEEEEE-
T ss_pred eeeeecceeeEEEeehhhhh-hhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEe-cCCceeEEeccC
Confidence 567899999976322 1111 1234455565 34567854 333332 13335666664 666677764433
Q ss_pred CCcccCceEEEEcCCCceE--------eCCC-CCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeec
Q 048803 179 DKNALKSAMAYDVARDEWA--------SLPD-MSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPV 249 (289)
Q Consensus 179 ~~~~~~~~~~yd~~~~~W~--------~~~~-~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~ 249 (289)
+..+..-...|= ++.|. .+++ ....-...+.-..+|+||+........ +.-..+..-+.....|+.+
T Consensus 157 D~sPRe~G~~yf--s~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~--~~GS~L~rs~d~G~~w~sl 232 (367)
T PF12217_consen 157 DVSPRELGFLYF--SDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPT--NPGSSLHRSDDNGQNWSSL 232 (367)
T ss_dssp SSSS-EEEEEEE--TTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TT--S---EEEEESSTTSS-EEE
T ss_pred CCCcceeeEEEe--cccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCC--CCcceeeeecccCCchhhc
Confidence 322222222332 22332 1211 111122344456899999987544321 1224566667778899988
Q ss_pred ccccccCCCCCCceeeeeCCeEEEEeCcee
Q 048803 250 EEDFMETATCPRSCAGVDSNDLYMCREGDV 279 (289)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~ 279 (289)
.-+ ....+..--.+..++.||++|..+.
T Consensus 233 rfp--~nvHhtnlPFakvgD~l~mFgsERA 260 (367)
T PF12217_consen 233 RFP--NNVHHTNLPFAKVGDVLYMFGSERA 260 (367)
T ss_dssp E-T--T---SS---EEEETTEEEEEEE-SS
T ss_pred ccc--ccccccCCCceeeCCEEEEEecccc
Confidence 753 1111111123456999999986543
No 181
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=44.13 E-value=2.3e+02 Score=26.50 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred ceeEEEEECCCCCeEeCCCCCCC-CCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCcc
Q 048803 80 VYRITVLELGSGEWSELPPIPGF-PDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRM 158 (289)
Q Consensus 80 ~~~~~~~d~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~ 158 (289)
..+++.++..+-+.+++.+.... .+..-+.......|+.|-++++ ...+++||..+.+-..+...+.....
T Consensus 450 ~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t--------~g~I~v~nl~~~~~~~l~~rln~~vT 521 (691)
T KOG2048|consen 450 IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST--------RGQIFVYNLETLESHLLKVRLNIDVT 521 (691)
T ss_pred cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec--------cceEEEEEcccceeecchhccCccee
Q ss_pred ceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc
Q 048803 159 LFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE 195 (289)
Q Consensus 159 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 195 (289)
..+......+++.+. ...+.++.||.+...
T Consensus 522 a~~~~~~~~~~lvva-------ts~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 522 AAAFSPFVRNRLVVA-------TSNNQVFEFDIEARN 551 (691)
T ss_pred eeeccccccCcEEEE-------ecCCeEEEEecchhh
No 182
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=44.06 E-value=2.1e+02 Score=24.62 Aligned_cols=102 Identities=17% Similarity=0.356 Sum_probs=56.7
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCC-
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD- 194 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~- 194 (289)
+..+.+.||.+ +..++++..++.|- ..+....-+-..+...+++.+.+.|+.+.. +.++...++
T Consensus 75 ~~~l~aTGGgD-------D~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG~------v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGD-------DLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSGK------VLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCC-------ceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCcc------EEEEEcccCc
Confidence 56788888854 45688898888863 222211111222333358888999988764 566665554
Q ss_pred -ceEeCCCCCccccccceEEE--CCEEEEEeeecCCCCCcccceEEEEECCCC
Q 048803 195 -EWASLPDMSRERDECKAVFH--CGKLLVIGGYSTNAQGRFERHAEAFDAAAQ 244 (289)
Q Consensus 195 -~W~~~~~~~~~~~~~~~~~~--~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~ 244 (289)
+|.-..+... ..-... .+.+++.|-.++ .+++|.+.++
T Consensus 140 ~~~~~~~e~~d----ieWl~WHp~a~illAG~~DG--------svWmw~ip~~ 180 (399)
T KOG0296|consen 140 EQWKLDQEVED----IEWLKWHPRAHILLAGSTDG--------SVWMWQIPSQ 180 (399)
T ss_pred eEEEeecccCc----eEEEEecccccEEEeecCCC--------cEEEEECCCc
Confidence 5764322210 000000 345666664432 5888888775
No 183
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=43.64 E-value=56 Score=27.78 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=37.0
Q ss_pred CCEEEEEcC---CCCCCcccCceEEEEcCCCceEeCCCCCccccccceE-EECCE--EEEEeeecCCCCCcccceEEEEE
Q 048803 167 DRTVYVAGG---HDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAV-FHCGK--LLVIGGYSTNAQGRFERHAEAFD 240 (289)
Q Consensus 167 ~~~iyv~GG---~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~--l~~~gG~~~~~~~~~~~~v~~yd 240 (289)
.+++||..- -..++.....++.||+++++=-.--++..+ ..+.. .-+++ ||..-+.+ ..+.+||
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~--------~~l~v~D 318 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--IDSIAVSQDDKPLLYALSAGD--------GTLDVYD 318 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--ESEEEEESSSS-EEEEEETTT--------TEEEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--cceEEEccCCCcEEEEEcCCC--------CeEEEEe
Confidence 678998742 223344567899999999853221122222 11222 33454 44443221 3699999
Q ss_pred CCCCce
Q 048803 241 AAAQQW 246 (289)
Q Consensus 241 ~~~~~W 246 (289)
..+++-
T Consensus 319 ~~tGk~ 324 (342)
T PF06433_consen 319 AATGKL 324 (342)
T ss_dssp TTT--E
T ss_pred CcCCcE
Confidence 999864
No 184
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=43.50 E-value=1.8e+02 Score=23.71 Aligned_cols=130 Identities=9% Similarity=0.119 Sum_probs=65.7
Q ss_pred ccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCce-EeCCCCC--cccccc
Q 048803 133 SSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEW-ASLPDMS--RERDEC 209 (289)
Q Consensus 133 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~~--~~~~~~ 209 (289)
...++++|+.++.-.... +|.......+.++.-+|...+.+- +. -.+++.++-+++- +++.|.- +.|.++
T Consensus 145 sg~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~n-nk-----G~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAAN-NK-----GNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred CCcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEEec-CC-----ccEEEEEccCCCccccceEhhheecccce
Confidence 566899999998653322 222223334455433665544432 22 1367777666432 2333322 234444
Q ss_pred ce-E--EECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCcee
Q 048803 210 KA-V--FHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDV 279 (289)
Q Consensus 210 ~~-~--~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~ 279 (289)
.. + .-++|.....+.+ ..+.+++.++. . ..........+-.--|++..+++.++.|+-|.
T Consensus 218 il~C~lSPd~k~lat~ssd--------ktv~iwn~~~~-~-kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSD--------KTVKIWNTDDF-F-KLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred EEEEEECCCCcEEEeecCC--------ceEEEEecCCc-e-eeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 33 2 2377777766654 25777777666 2 22111111111222377777887777777553
No 185
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=43.11 E-value=13 Score=31.27 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=32.6
Q ss_pred CCCCChHHHHHHHhhcCC--------hhhHHHHHHHhhhHHhhhcCh
Q 048803 3 LIPDLPNEIALECLSRVS--------YKQFATISSVCKGWKSEISRP 41 (289)
Q Consensus 3 ~~~~Lp~dl~~~il~~lp--------~~~l~~~~~v~k~W~~l~~~~ 41 (289)
....||.++|.+|+-++. +++......||+.|+.+..+.
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 456899999999999975 557788899999999987653
No 186
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=42.24 E-value=1.3e+02 Score=24.85 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=35.2
Q ss_pred cCCEEEEEcCCCCCCc-ccCceEEEEcC-CCceEeCCCCCc-cccccceEEECCEEEEEeee
Q 048803 166 GDRTVYVAGGHDEDKN-ALKSAMAYDVA-RDEWASLPDMSR-ERDECKAVFHCGKLLVIGGY 224 (289)
Q Consensus 166 ~~~~iyv~GG~~~~~~-~~~~~~~yd~~-~~~W~~~~~~~~-~~~~~~~~~~~~~l~~~gG~ 224 (289)
.+|+.++.|-....+. ..+.+..|.-. .++|..++.-+. ....+-.+.++|+| ++||.
T Consensus 35 ~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~gel-ifGGv 95 (298)
T PF08950_consen 35 YNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGEL-IFGGV 95 (298)
T ss_dssp ETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEE-EEEEE
T ss_pred ECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEE-EEeeE
Confidence 4888888887665544 56678888766 889999987443 33345566778885 45654
No 187
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=41.87 E-value=2.1e+02 Score=23.98 Aligned_cols=92 Identities=13% Similarity=0.163 Sum_probs=48.3
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..+..||..++.-..+..-..+-. +..-......++.||++ ..+..+|+....=....+.+ . .-+
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i~-----ci~~~~~~~~vIsgsWD-------~~ik~wD~R~~~~~~~~d~~--k-kVy 139 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGIR-----CIEYSYEVGCVISGSWD-------KTIKFWDPRNKVVVGTFDQG--K-KVY 139 (323)
T ss_pred ceEEEEEecCCcceeeccCCCceE-----EEEeeccCCeEEEcccC-------ccEEEEeccccccccccccC--c-eEE
Confidence 577889998876554443222111 11112234566778775 44778888762211111212 1 233
Q ss_pred eEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc
Q 048803 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE 195 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 195 (289)
+..+ .+.+.|+|+.+. .+..||+.+..
T Consensus 140 ~~~v--~g~~LvVg~~~r------~v~iyDLRn~~ 166 (323)
T KOG1036|consen 140 CMDV--SGNRLVVGTSDR------KVLIYDLRNLD 166 (323)
T ss_pred EEec--cCCEEEEeecCc------eEEEEEccccc
Confidence 3333 455556665443 48999998763
No 188
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=41.36 E-value=2.9e+02 Score=25.46 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=61.3
Q ss_pred EEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCC-EEEEEcCCCCCCcccCceEEEE
Q 048803 112 LSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYD 190 (289)
Q Consensus 112 ~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd 190 (289)
.+.+++.++|.|..+ ..+-+||+.+.+- +..+.. +...-.+.++++ ...+-|..+. .+.+.|
T Consensus 336 ~v~~~~~~lvsgs~d-------~~v~VW~~~~~~c--l~sl~g--H~~~V~sl~~~~~~~~~Sgs~D~------~IkvWd 398 (537)
T KOG0274|consen 336 CVQLDEPLLVSGSYD-------GTVKVWDPRTGKC--LKSLSG--HTGRVYSLIVDSENRLLSGSLDT------TIKVWD 398 (537)
T ss_pred EEEecCCEEEEEecC-------ceEEEEEhhhcee--eeeecC--CcceEEEEEecCcceEEeeeecc------ceEeec
Confidence 334455666666543 2577888886553 333331 112222223355 5666666553 478888
Q ss_pred cCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeeccc
Q 048803 191 VARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEE 251 (289)
Q Consensus 191 ~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 251 (289)
+.+.. ..+..+......-....+.++.++.+..++ .|..+|.++++-.++-.
T Consensus 399 l~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~--------~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 399 LRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADG--------TIKLWDAEEGECLRTLE 450 (537)
T ss_pred CCchh-hhhhhhcCCcccccccccccceeEeccccc--------cEEEeecccCceeeeec
Confidence 88775 222222222211222345677777776653 58888988877655543
No 189
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.80 E-value=1.5e+02 Score=24.14 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=29.2
Q ss_pred EEcCCCceEe--CCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECC-CCceeeccc
Q 048803 189 YDVARDEWAS--LPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAA-AQQWGPVEE 251 (289)
Q Consensus 189 yd~~~~~W~~--~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~-~~~W~~~~~ 251 (289)
-+-+.+.|+. +.++|.+....+-...++-|-+.||- +.+.++-.+ .++|.++..
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd---------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD---------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCC---------cEEEEEEeCCCCcEEEccc
Confidence 3445567863 34566555433333334444444443 246666544 559999875
No 190
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=39.28 E-value=1.8e+02 Score=22.49 Aligned_cols=83 Identities=8% Similarity=0.073 Sum_probs=45.9
Q ss_pred cccccceEEEEccCCeEEeC--CCCC--CCCccceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCc
Q 048803 130 WEASSSVFVFNIISATWRRG--ADMP--GGRRMLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSR 204 (289)
Q Consensus 130 ~~~~~~~~~yd~~t~~W~~~--~~~~--~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 204 (289)
++....++++|..++.|..+ .+-. ..|. -+.-+-+. .++++|..-+.-...-.+++|++.+++=..+-+...
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~d 160 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKD 160 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccc
Confidence 46788999999999888655 2221 1122 12222233 445555322221123469999999998887766544
Q ss_pred cccccceEEEC
Q 048803 205 ERDECKAVFHC 215 (289)
Q Consensus 205 ~~~~~~~~~~~ 215 (289)
.......+...
T Consensus 161 kkqQVis~e~~ 171 (200)
T PF15525_consen 161 KKQQVISAEKN 171 (200)
T ss_pred cceeEEEEEEe
Confidence 33333333333
No 191
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=38.94 E-value=2.3e+02 Score=23.73 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=63.4
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE 195 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 195 (289)
++.....|+. -.++-.||+.+++-..++....+.+..+-... ..-.+.+.|.++.. +-..|+..-.
T Consensus 83 dgskVf~g~~-------Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKT------lKfWD~R~~~ 148 (347)
T KOG0647|consen 83 DGSKVFSGGC-------DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKT------LKFWDTRSSN 148 (347)
T ss_pred CCceEEeecc-------CCceEEEEccCCCeeeeeecccceeEEEEecC-CCcceeEecccccc------eeecccCCCC
Confidence 3444445554 35577899999987777655533332221111 23345666666542 4445555221
Q ss_pred eEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCC--ceeecccccccCCCCCCceeeeeCCeEEE
Q 048803 196 WASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQ--QWGPVEEDFMETATCPRSCAGVDSNDLYM 273 (289)
Q Consensus 196 W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~ly~ 273 (289)
=-..-.||.. .++ +-+ ..-+.+++-.+ ..|.+|++++. +.+.+.++ +.. ..+..++..++..|.
T Consensus 149 pv~t~~LPeR-vYa-~Dv-~~pm~vVata~--------r~i~vynL~n~~te~k~~~Sp-Lk~--Q~R~va~f~d~~~~a 214 (347)
T KOG0647|consen 149 PVATLQLPER-VYA-ADV-LYPMAVVATAE--------RHIAVYNLENPPTEFKRIESP-LKW--QTRCVACFQDKDGFA 214 (347)
T ss_pred eeeeeeccce-eee-hhc-cCceeEEEecC--------CcEEEEEcCCCcchhhhhcCc-ccc--eeeEEEEEecCCceE
Confidence 1111123322 111 111 22333333221 35888988665 34444442 221 122223445777888
Q ss_pred EeCc
Q 048803 274 CREG 277 (289)
Q Consensus 274 ~GG~ 277 (289)
+|+-
T Consensus 215 lGsi 218 (347)
T KOG0647|consen 215 LGSI 218 (347)
T ss_pred eeee
Confidence 8864
No 192
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=37.69 E-value=2.7e+02 Score=24.02 Aligned_cols=135 Identities=15% Similarity=0.278 Sum_probs=67.3
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCC--eEEeCCCCCCCCcc
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISA--TWRRGADMPGGRRM 158 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~ 158 (289)
...++|+..++.|- ..+......- -+...+.++.+++.|+.. ..+.++...++ +|+...+... .
T Consensus 86 D~AflW~~~~ge~~--~eltgHKDSV--t~~~FshdgtlLATGdms-------G~v~v~~~stg~~~~~~~~e~~d-i-- 151 (399)
T KOG0296|consen 86 DLAFLWDISTGEFA--GELTGHKDSV--TCCSFSHDGTLLATGDMS-------GKVLVFKVSTGGEQWKLDQEVED-I-- 151 (399)
T ss_pred ceEEEEEccCCcce--eEecCCCCce--EEEEEccCceEEEecCCC-------ccEEEEEcccCceEEEeecccCc-e--
Confidence 45678888888753 1122211111 123345567777777754 45677776665 4765433321 0
Q ss_pred ceeEEEec-CCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEE
Q 048803 159 LFGCASDG-DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAE 237 (289)
Q Consensus 159 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~ 237 (289)
.-...+ .+.|.++|-.+. .+++|...+..=.++-+-+..+...+-..-+||..+.|-.+ ..|.
T Consensus 152 --eWl~WHp~a~illAG~~DG------svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d--------gti~ 215 (399)
T KOG0296|consen 152 --EWLKWHPRAHILLAGSTDG------SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD--------GTII 215 (399)
T ss_pred --EEEEecccccEEEeecCCC------cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC--------ceEE
Confidence 001111 344555554433 37888777653333322222211222223357766665332 3688
Q ss_pred EEECCCCc
Q 048803 238 AFDAAAQQ 245 (289)
Q Consensus 238 ~yd~~~~~ 245 (289)
++|+.+.+
T Consensus 216 ~Wn~ktg~ 223 (399)
T KOG0296|consen 216 VWNPKTGQ 223 (399)
T ss_pred EEecCCCc
Confidence 88998874
No 193
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=2.2e+02 Score=22.64 Aligned_cols=99 Identities=9% Similarity=-0.061 Sum_probs=57.6
Q ss_pred cCCEEEEEcCCCCCCcccCceEEEEcCCCc--eEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCC
Q 048803 166 GDRTVYVAGGHDEDKNALKSAMAYDVARDE--WASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 166 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
.+|.|+..-|.... +.+..+|+.+.+ |++--+ |....+-+.+.+++.+|..--.++ .-+.||+++
T Consensus 54 ~~g~i~esTG~yg~----S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~eg--------vaf~~d~~t 120 (262)
T COG3823 54 LDGHILESTGLYGF----SKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEG--------VAFKYDADT 120 (262)
T ss_pred eCCEEEEecccccc----ceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccc--------eeEEEChHH
Confidence 47788887775543 569999999764 653322 223346677888999999874432 246677544
Q ss_pred CceeecccccccCCCCCCceeeeeCCeEEEEeCceeecc
Q 048803 244 QQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDVMAL 282 (289)
Q Consensus 244 ~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~ 282 (289)
.+++.... ..--..+++.-+.+|.+-.|.+.+..
T Consensus 121 --~~~lg~~~---y~GeGWgLt~d~~~LimsdGsatL~f 154 (262)
T COG3823 121 --LEELGRFS---YEGEGWGLTSDDKNLIMSDGSATLQF 154 (262)
T ss_pred --hhhhcccc---cCCcceeeecCCcceEeeCCceEEEe
Confidence 33333311 11223456665666666666554433
No 194
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=36.06 E-value=3.1e+02 Score=24.35 Aligned_cols=133 Identities=10% Similarity=0.153 Sum_probs=64.3
Q ss_pred EEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccc-eeEEEec-CCEEEEEcCCCCCCcccCceEE
Q 048803 111 QLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRML-FGCASDG-DRTVYVAGGHDEDKNALKSAMA 188 (289)
Q Consensus 111 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 188 (289)
.+++.+++.++.||.+ ..+.++|..|..=. ..+. ..+.. .+.+.-. -..+|..+-. ..+-.
T Consensus 208 ~avS~Dgkylatgg~d-------~~v~Iw~~~t~ehv--~~~~-ghr~~V~~L~fr~gt~~lys~s~D-------rsvkv 270 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRD-------RHVQIWDCDTLEHV--KVFK-GHRGAVSSLAFRKGTSELYSASAD-------RSVKV 270 (479)
T ss_pred EEEcCCCcEEEecCCC-------ceEEEecCcccchh--hccc-ccccceeeeeeecCccceeeeecC-------CceEE
Confidence 3556678888999854 44678888775532 2233 12221 1222211 2245544211 12333
Q ss_pred EEcCCCceEeCCCCCccccccceE------EECCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCc
Q 048803 189 YDVARDEWASLPDMSRERDECKAV------FHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRS 262 (289)
Q Consensus 189 yd~~~~~W~~~~~~~~~~~~~~~~------~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 262 (289)
++.+.... +. ..++|..+ .-.+++..+||.+. .+..|++...+ +.+-. +. ....-
T Consensus 271 w~~~~~s~--ve----tlyGHqd~v~~IdaL~reR~vtVGgrDr--------T~rlwKi~ees-qlifr---g~-~~sid 331 (479)
T KOG0299|consen 271 WSIDQLSY--VE----TLYGHQDGVLGIDALSRERCVTVGGRDR--------TVRLWKIPEES-QLIFR---GG-EGSID 331 (479)
T ss_pred EehhHhHH--HH----HHhCCccceeeechhcccceEEeccccc--------eeEEEeccccc-eeeee---CC-CCCee
Confidence 33332211 11 12223222 23578999999874 45666652221 22211 10 11223
Q ss_pred eeeeeCCeEEEEeCcee
Q 048803 263 CAGVDSNDLYMCREGDV 279 (289)
Q Consensus 263 ~~~~~~~~ly~~GG~~~ 279 (289)
|++.+++.=|+.|+.++
T Consensus 332 cv~~In~~HfvsGSdnG 348 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDNG 348 (479)
T ss_pred eEEEecccceeeccCCc
Confidence 66667888888888765
No 195
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=34.05 E-value=2.5e+02 Score=22.62 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=51.3
Q ss_pred cCCEEEEEcCCCCCCcccCceEEEEcCC-CceEeCCCCCcc-cc-ccceEE-ECCEEEEEeeecCCCCCcccceEEEEEC
Q 048803 166 GDRTVYVAGGHDEDKNALKSAMAYDVAR-DEWASLPDMSRE-RD-ECKAVF-HCGKLLVIGGYSTNAQGRFERHAEAFDA 241 (289)
Q Consensus 166 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~-~~-~~~~~~-~~~~l~~~gG~~~~~~~~~~~~v~~yd~ 241 (289)
.+|++++.. +.........+..|.... .+|+.....+.. .. ....+. -+|+|+++.... ... .....+..
T Consensus 117 ~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~----~~~~~~S~ 190 (275)
T PF13088_consen 117 PDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND----DIYISRST 190 (275)
T ss_dssp CTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST----EEEEEEES
T ss_pred cCCCEEEEE-eeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC----cEEEEEEC
Confidence 378888872 111111233455565554 469877665422 22 222232 377899887553 211 23444444
Q ss_pred C-CCceeecccccccCCCCCCceeeeeCCeEEEEeC
Q 048803 242 A-AQQWGPVEEDFMETATCPRSCAGVDSNDLYMCRE 276 (289)
Q Consensus 242 ~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG 276 (289)
+ ..+|+.......+........+..-+++++++..
T Consensus 191 D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 226 (275)
T PF13088_consen 191 DGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYN 226 (275)
T ss_dssp STTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEE
T ss_pred CCCCcCCCceecccCcccCCceEEEcCCCCEEEEEE
Confidence 4 4589986533233222111112224678887766
No 196
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=33.95 E-value=3.2e+02 Score=23.79 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=58.4
Q ss_pred cceEEEEccCC-----eEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc---eE-eCCCCCc
Q 048803 134 SSVFVFNIISA-----TWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE---WA-SLPDMSR 204 (289)
Q Consensus 134 ~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~-~~~~~~~ 204 (289)
+++++.|.... .|+.+.+-. ... ...+.. .++.+|+.-..+ .....+..+++.+.. |. .+.+...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~-~~~-~~~v~~-~~~~~yi~Tn~~---a~~~~l~~~~l~~~~~~~~~~~l~~~~~ 325 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRE-DGV-EYYVDH-HGDRLYILTNDD---APNGRLVAVDLADPSPAEWWTVLIPEDE 325 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESS-SS--EEEEEE-ETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred CeEEEEeccccCCCcCCcEEEeCCC-Cce-EEEEEc-cCCEEEEeeCCC---CCCcEEEEecccccccccceeEEcCCCC
Confidence 77888888765 687775422 111 122222 378888875422 234568888888764 66 4443333
Q ss_pred cccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCceeec
Q 048803 205 ERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPV 249 (289)
Q Consensus 205 ~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~ 249 (289)
...-..+...++.|++..-.+. ...+.+||.. ..|...
T Consensus 326 ~~~l~~~~~~~~~Lvl~~~~~~------~~~l~v~~~~-~~~~~~ 363 (414)
T PF02897_consen 326 DVSLEDVSLFKDYLVLSYRENG------SSRLRVYDLD-DGKESR 363 (414)
T ss_dssp SEEEEEEEEETTEEEEEEEETT------EEEEEEEETT--TEEEE
T ss_pred ceeEEEEEEECCEEEEEEEECC------ccEEEEEECC-CCcEEe
Confidence 3333444556888887765442 3578999987 334433
No 197
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.90 E-value=3.8e+02 Score=24.64 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=39.3
Q ss_pred cccceEEEEccCCeEEeCCCCCCCCcc-ceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc--eEeCCCCCccccc
Q 048803 132 ASSSVFVFNIISATWRRGADMPGGRRM-LFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE--WASLPDMSRERDE 208 (289)
Q Consensus 132 ~~~~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~ 208 (289)
..-+.-+|+...++-+.+.-...+... ...++...+....++|--++ .+..||..++. +.+.+-+|
T Consensus 234 ~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg------SiiLyD~~~~~t~~~ka~~~P----- 302 (545)
T PF11768_consen 234 PSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG------SIILYDTTRGVTLLAKAEFIP----- 302 (545)
T ss_pred ceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC------eEEEEEcCCCeeeeeeecccc-----
Confidence 455566777777765544221111111 11222212445566654333 48999988763 33222222
Q ss_pred cceEEE--CCEEEEEeeec
Q 048803 209 CKAVFH--CGKLLVIGGYS 225 (289)
Q Consensus 209 ~~~~~~--~~~l~~~gG~~ 225 (289)
+.+.. +|-++++|+..
T Consensus 303 -~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 303 -TLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred -eEEEEcCCCcEEEEEcCC
Confidence 22222 56677776543
No 198
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=31.60 E-value=38 Score=19.81 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.2
Q ss_pred CCChHHHHHHHhhcC
Q 048803 5 PDLPNEIALECLSRV 19 (289)
Q Consensus 5 ~~Lp~dl~~~il~~l 19 (289)
|-+||++++-+|.+.
T Consensus 1 P~IPD~v~~~yL~~~ 15 (51)
T PF03540_consen 1 PTIPDEVTDYYLERS 15 (51)
T ss_pred CCCCHHHHHHHHHHC
Confidence 579999999999985
No 199
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=31.54 E-value=66 Score=21.33 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=16.3
Q ss_pred cceEEEEECCCCceeecccc
Q 048803 233 ERHAEAFDAAAQQWGPVEED 252 (289)
Q Consensus 233 ~~~v~~yd~~~~~W~~~~~~ 252 (289)
...+..|||.+++.+.+...
T Consensus 36 ~GRll~ydp~t~~~~vl~~~ 55 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDG 55 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhC
Confidence 45799999999999888664
No 200
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=30.33 E-value=3.2e+02 Score=22.69 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=28.8
Q ss_pred eEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCceeecc
Q 048803 235 HAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDVMAL 282 (289)
Q Consensus 235 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~ 282 (289)
.|.++|..+-+-. ...+.......++.+..||.+...||.++..+
T Consensus 173 tvKvWnl~~~~l~---~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 173 TVKVWNLRNCQLR---TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred eEEEEccCCcchh---hccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 5788888775532 22223333344456678999999999887544
No 201
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.98 E-value=3.8e+02 Score=25.47 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCEEEEEeeecCCCCCcccceEEEEECCCCceeecccccccCCCCCCceeeeeCCeEEEEeCcee
Q 048803 215 CGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYMCREGDV 279 (289)
Q Consensus 215 ~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~ 279 (289)
+|+-...|+.++ .|..||..+.+= +..+ ........+--+..+|.++++||.|.
T Consensus 588 ~Gr~LaSg~ed~--------~I~iWDl~~~~~--v~~l-~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 588 CGRYLASGDEDG--------LIKIWDLANGSL--VKQL-KGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred CCceEeecccCC--------cEEEEEcCCCcc--hhhh-hcccCceeEEEEecCCCEEEecCCCC
Confidence 666666665543 588999988542 2111 01111111123467999999999664
No 202
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=29.74 E-value=32 Score=18.94 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=13.8
Q ss_pred CCCCCChHHHHHHHhhc
Q 048803 2 DLIPDLPNEIALECLSR 18 (289)
Q Consensus 2 ~~~~~Lp~dl~~~il~~ 18 (289)
+++|.++++.+..+|..
T Consensus 11 ~mFP~l~~~~I~~~L~~ 27 (43)
T smart00546 11 DMFPNLDEEVIKAVLEA 27 (43)
T ss_pred HHCCCCCHHHHHHHHHH
Confidence 57889999988888863
No 203
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=29.64 E-value=4e+02 Score=23.65 Aligned_cols=122 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred hcCCCCCeEEEEeeeeccccCCCCCCCCCCCceeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCC
Q 048803 49 DTRSSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLT 128 (289)
Q Consensus 49 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~ 128 (289)
.....+..+.+...+... .+++.+|..+++-.++...+...... ...-.+.+|+......
T Consensus 244 ~fspDG~~l~f~~~rdg~--------------~~iy~~dl~~~~~~~Lt~~~gi~~~P----s~spdG~~ivf~Sdr~-- 303 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGS--------------PDIYLMDLDGKNLPRLTNGFGINTSP----SWSPDGSKIVFTSDRG-- 303 (425)
T ss_pred cCCCCCCEEEEEECCCCC--------------ccEEEEcCCCCcceecccCCccccCc----cCCCCCCEEEEEeCCC--
Q ss_pred CcccccceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc-eEeC
Q 048803 129 TWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE-WASL 199 (289)
Q Consensus 129 ~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~ 199 (289)
...+++++|+....=+++..-. ........+. +|+.+++-+..... ..+..+|+.++. |+.+
T Consensus 304 ---G~p~I~~~~~~g~~~~riT~~~-~~~~~p~~Sp--dG~~i~~~~~~~g~---~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 304 ---GRPQIYLYDLEGSQVTRLTFSG-GGNSNPVWSP--DGDKIVFESSSGGQ---WDIDKNDLASGGKIRIL 366 (425)
T ss_pred ---CCcceEEECCCCCceeEeeccC-CCCcCccCCC--CCCEEEEEeccCCc---eeeEEeccCCCCcEEEc
No 204
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=29.44 E-value=3.1e+02 Score=22.26 Aligned_cols=163 Identities=15% Similarity=0.167 Sum_probs=86.7
Q ss_pred CCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCe---EEeCCCCCCC--------CccceeEEEec
Q 048803 98 PIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISAT---WRRGADMPGG--------RRMLFGCASDG 166 (289)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~---W~~~~~~~~~--------~~~~~~~~~~~ 166 (289)
.+|.+..+. ..++.++.+|.-.+ .+..+.+||+.+.. +..+|.+... .......++.
T Consensus 63 ~lp~~~~gT----g~VVynGs~yynk~-------~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avD- 130 (249)
T KOG3545|consen 63 RLPYSWDGT----GHVVYNGSLYYNKA-------GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVD- 130 (249)
T ss_pred eCCCCcccc----ceEEEcceEEeecc-------CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceec-
Confidence 345554443 56777888876532 35678899998844 5555544321 1112234443
Q ss_pred CCEEEEEcCCCCCCcccCceEEEEcCC----CceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECC
Q 048803 167 DRTVYVAGGHDEDKNALKSAMAYDVAR----DEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAA 242 (289)
Q Consensus 167 ~~~iyv~GG~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~ 242 (289)
..-++++=-..+.. ..-.+.+.|+.+ .+|..-- + .+.-..+.++.|.||++-....... .--++||..
T Consensus 131 E~GLWviYat~~~~-g~iv~skLdp~tl~~e~tW~T~~--~-k~~~~~aF~iCGvLY~v~S~~~~~~----~i~yaydt~ 202 (249)
T KOG3545|consen 131 ENGLWVIYATPENA-GTIVLSKLDPETLEVERTWNTTL--P-KRSAGNAFMICGVLYVVHSYNCTHT----QISYAYDTT 202 (249)
T ss_pred ccceeEEecccccC-CcEEeeccCHHHhheeeeecccc--C-CCCcCceEEEeeeeEEEeccccCCc----eEEEEEEcC
Confidence 33355553332221 112236677754 3564321 1 2333455667789999977654321 122789998
Q ss_pred CCceeecccccccCCCCCCceee---eeCCeEEEEeCceeecc
Q 048803 243 AQQWGPVEEDFMETATCPRSCAG---VDSNDLYMCREGDVMAL 282 (289)
Q Consensus 243 ~~~W~~~~~~~~~~~~~~~~~~~---~~~~~ly~~GG~~~~~~ 282 (289)
+++=..+..+.+..- ....+. -.+.+||+..-...+.|
T Consensus 203 ~~~~~~~~ipf~N~y--~~~~~idYNP~D~~LY~wdng~~l~y 243 (249)
T KOG3545|consen 203 TGTQERIDLPFPNPY--SYATMIDYNPRDRRLYAWDNGHQLTY 243 (249)
T ss_pred CCceecccccccchh--hhhhccCCCcccceeeEecCCcEEEE
Confidence 888766654322221 111222 25788998876554443
No 205
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=29.39 E-value=79 Score=21.78 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=25.5
Q ss_pred CCCCCChHHHHHHHhhcCChhhHHHHHHHh
Q 048803 2 DLIPDLPNEIALECLSRVSYKQFATISSVC 31 (289)
Q Consensus 2 ~~~~~Lp~dl~~~il~~lp~~~l~~~~~v~ 31 (289)
+-+..+|-+++.-||.++.+..|.++-.-|
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 346789999999999999999998886654
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=29.38 E-value=3.8e+02 Score=23.22 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=46.9
Q ss_pred eeEEEEECCCCCeE-eCCCCCCCCCCCCceeEEEE--eCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCc
Q 048803 81 YRITVLELGSGEWS-ELPPIPGFPDGLPLFCQLSA--VGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRR 157 (289)
Q Consensus 81 ~~~~~~d~~~~~W~-~~~~~~~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~ 157 (289)
..+.+.|..+++-. .++.... .+ ..... .+..+|+.+. ...+-++|+.+.+-. ...+ ...
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~---~h---~~~~~s~Dgr~~yv~~r--------dg~vsviD~~~~~~v--~~i~-~G~ 78 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGA---PH---AGLKFSPDGRYLYVANR--------DGTVSVIDLATGKVV--ATIK-VGG 78 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STT---EE---EEEE-TT-SSEEEEEET--------TSEEEEEETTSSSEE--EEEE--SS
T ss_pred CEEEEEECCCCeEEEEEcCCCC---ce---eEEEecCCCCEEEEEcC--------CCeEEEEECCcccEE--EEEe-cCC
Confidence 57889999887632 3332111 11 12222 2457999853 235789999998732 2222 122
Q ss_pred cceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCc
Q 048803 158 MLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDE 195 (289)
Q Consensus 158 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 195 (289)
...+.+...+|+..+++.+.. ..+..+|.+|.+
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~-----~~v~v~D~~tle 111 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEP-----GTVSVIDAETLE 111 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEET-----TEEEEEETTT--
T ss_pred CcceEEEcCCCCEEEEEecCC-----CceeEecccccc
Confidence 234455444665444443332 358889988764
No 207
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.10 E-value=3.5e+02 Score=22.78 Aligned_cols=99 Identities=20% Similarity=0.289 Sum_probs=57.7
Q ss_pred CCEEEEEeCcCCCCcccccceEEEEccCCeEE-eCCCCCCCCccceeEEEec--CCEEEEEcCCCCCCcccCceEEEEcC
Q 048803 116 GPELVVIGGLDLTTWEASSSVFVFNIISATWR-RGADMPGGRRMLFGCASDG--DRTVYVAGGHDEDKNALKSAMAYDVA 192 (289)
Q Consensus 116 ~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~ 192 (289)
...+++|+- +......+||+.+++-. .+.+ + +-|.+++..+.. +..+|..-...+. ..-.+-+||..
T Consensus 16 ~~~avafaR------RPG~~~~v~D~~~g~~~~~~~a-~-~gRHFyGHg~fs~dG~~LytTEnd~~~--g~G~IgVyd~~ 85 (305)
T PF07433_consen 16 RPEAVAFAR------RPGTFALVFDCRTGQLLQRLWA-P-PGRHFYGHGVFSPDGRLLYTTENDYET--GRGVIGVYDAA 85 (305)
T ss_pred CCeEEEEEe------CCCcEEEEEEcCCCceeeEEcC-C-CCCEEecCEEEcCCCCEEEEeccccCC--CcEEEEEEECc
Confidence 456777765 35666889999998743 3333 3 345555555533 4567776443222 23468899998
Q ss_pred CCceEeCCCCCc-cccccceEEE-CC-EEEE-Eeeec
Q 048803 193 RDEWASLPDMSR-ERDECKAVFH-CG-KLLV-IGGYS 225 (289)
Q Consensus 193 ~~~W~~~~~~~~-~~~~~~~~~~-~~-~l~~-~gG~~ 225 (289)
+....+...+. ....|-+..+ +| .|.| .||..
T Consensus 86 -~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 86 -RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred -CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence 67777776664 3334555444 44 3444 35543
No 208
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=28.32 E-value=4.6e+02 Score=23.93 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=39.1
Q ss_pred EEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEE--CCEEEEEeeecCCCCCcccceEEEE
Q 048803 162 CASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFH--CGKLLVIGGYSTNAQGRFERHAEAF 239 (289)
Q Consensus 162 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~--~~~l~~~gG~~~~~~~~~~~~v~~y 239 (289)
.++..++...++||-+. ++..|.+..+.=.+..-+...+...+.+.+ ++..+..|-. ...+..|
T Consensus 449 vAv~~~~~~vaVGG~Dg------kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da--------~rkvv~y 514 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDG------KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA--------SRKVVLY 514 (603)
T ss_pred EEEcCCCCEEEEecccc------eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc--------CCcEEEE
Confidence 33334788888888654 388898887654333333333333333332 5555555533 2357777
Q ss_pred ECCCCc
Q 048803 240 DAAAQQ 245 (289)
Q Consensus 240 d~~~~~ 245 (289)
|.++++
T Consensus 515 d~~s~~ 520 (603)
T KOG0318|consen 515 DVASRE 520 (603)
T ss_pred EcccCc
Confidence 776654
No 209
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=28.29 E-value=62 Score=14.73 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=8.7
Q ss_pred HHHHHHHhhcC
Q 048803 9 NEIALECLSRV 19 (289)
Q Consensus 9 ~dl~~~il~~l 19 (289)
||||.+|+..-
T Consensus 3 deiL~~CI~sA 13 (20)
T PF05924_consen 3 DEILQECIGSA 13 (20)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHHh
Confidence 58999998764
No 210
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.11 E-value=3.3e+02 Score=22.13 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=32.8
Q ss_pred eEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCE----EEEEeee
Q 048803 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGK----LLVIGGY 224 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~----l~~~gG~ 224 (289)
+.+...+|.|||.-= ....+.++||.|+.-..---+|.++ .+++.++|+ +|+....
T Consensus 216 Gm~ID~eG~L~Va~~------ng~~V~~~dp~tGK~L~eiklPt~q--itsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATF------NGGTVQKVDPTTGKILLEIKLPTPQ--ITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred cceEccCCcEEEEEe------cCcEEEEECCCCCcEEEEEEcCCCc--eEEEEecCCCccEEEEEehh
Confidence 444445788998721 2246999999998754333344444 344555554 6666543
No 211
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=28.01 E-value=4e+02 Score=23.14 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=48.7
Q ss_pred CCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCC--CCccceeEEEecCCEEEEEcCCCCCC-
Q 048803 104 DGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPG--GRRMLFGCASDGDRTVYVAGGHDEDK- 180 (289)
Q Consensus 104 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~--~~~~~~~~~~~~~~~iyv~GG~~~~~- 180 (289)
++.+.+-+.-..++++||+-. .--+++.++..+.=+.+.+-.. +.+......+.-+|.||..-.....+
T Consensus 114 CGRPLGl~f~~~ggdL~VaDA--------YlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADA--------YLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDR 185 (376)
T ss_pred cCCcceEEeccCCCeEEEEec--------ceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccch
Confidence 333444455566779999844 4456777887777544433221 12222334443366777765543211
Q ss_pred ----------cccCceEEEEcCCCceEeC
Q 048803 181 ----------NALKSAMAYDVARDEWASL 199 (289)
Q Consensus 181 ----------~~~~~~~~yd~~~~~W~~~ 199 (289)
+..-.+..||+.|+.=+.+
T Consensus 186 rd~~~a~l~g~~~GRl~~YD~~tK~~~VL 214 (376)
T KOG1520|consen 186 RDFVFAALEGDPTGRLFRYDPSTKVTKVL 214 (376)
T ss_pred hheEEeeecCCCccceEEecCcccchhhh
Confidence 1233588999999876544
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=27.83 E-value=2.8e+02 Score=21.28 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccccceEEECCEEEEEeeecCCCCCcccceEEEEECCCCce
Q 048803 167 DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQW 246 (289)
Q Consensus 167 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~W 246 (289)
+.++.++-|..+ ..+..||.+. ..+..++........-.-+|+.++++|.... ...+..||.. +.
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~~---~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~-----~G~l~~wd~~--~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVKG---KKIFSFGTQPRNTISWSPDGRFLVLAGFGNL-----NGDLEFWDVR--KK 135 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCcc---cEeEeecCCCceEEEECCCCCEEEEEEccCC-----CcEEEEEECC--CC
Confidence 445555544322 2588999863 2333333221122222347888999887643 2468999987 44
Q ss_pred eeccc
Q 048803 247 GPVEE 251 (289)
Q Consensus 247 ~~~~~ 251 (289)
+.+..
T Consensus 136 ~~i~~ 140 (194)
T PF08662_consen 136 KKIST 140 (194)
T ss_pred EEeec
Confidence 44443
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=26.88 E-value=2.5e+02 Score=24.32 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=50.4
Q ss_pred cccceEEEEccCCe-EEeCCCCCCCCccceeEEEecC-CEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCcccccc
Q 048803 132 ASSSVFVFNIISAT-WRRGADMPGGRRMLFGCASDGD-RTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDEC 209 (289)
Q Consensus 132 ~~~~~~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~ 209 (289)
...++.+.|..+.+ -..++... .+ +.+....-+ .++|+.+. + ..+..+|+.+.+ .+...+.+....
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~-~~--h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGG-AP--HAGLKFSPDGRYLYVANR-D------GTVSVIDLATGK--VVATIKVGGNPR 81 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-ST-TE--EEEEE-TT-SSEEEEEET-T------SEEEEEETTSSS--EEEEEE-SSEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCC-Cc--eeEEEecCCCCEEEEEcC-C------CeEEEEECCccc--EEEEEecCCCcc
Confidence 35678889988876 33444332 22 222332233 46888753 2 258999999886 444444444333
Q ss_pred ceE-EECCEEEEEeeecCCCCCcccceEEEEECCCCc
Q 048803 210 KAV-FHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQ 245 (289)
Q Consensus 210 ~~~-~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~~ 245 (289)
+.+ .-+|+..+++.+.. +.+.++|.++.+
T Consensus 82 ~i~~s~DG~~~~v~n~~~-------~~v~v~D~~tle 111 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEP-------GTVSVIDAETLE 111 (369)
T ss_dssp EEEE--TTTEEEEEEEET-------TEEEEEETTT--
T ss_pred eEEEcCCCCEEEEEecCC-------CceeEecccccc
Confidence 443 34777555554432 368889977754
No 214
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=26.51 E-value=31 Score=18.92 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=13.1
Q ss_pred CCCCCChHHHHHHHhhcC
Q 048803 2 DLIPDLPNEIALECLSRV 19 (289)
Q Consensus 2 ~~~~~Lp~dl~~~il~~l 19 (289)
+++|.++.+.+..+|..-
T Consensus 10 ~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 10 EMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHSSSS-HHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHc
Confidence 468889999988888543
No 215
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=26.03 E-value=4e+02 Score=25.72 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=48.8
Q ss_pred cccceEEEEccCCeEEeCCCCCCCCccceeEEEec---CCEEEEEcCCCCCCcccCceEEE------EcCCCceEeCCCC
Q 048803 132 ASSSVFVFNIISATWRRGADMPGGRRMLFGCASDG---DRTVYVAGGHDEDKNALKSAMAY------DVARDEWASLPDM 202 (289)
Q Consensus 132 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~y------d~~~~~W~~~~~~ 202 (289)
..-..|.||+.+..|........|......+.... .....++.|.++. -.++++ .+....|....--
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~----~KiW~~~~~~n~~k~~s~W~c~~i~ 505 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGD----FKIWVFTDDSNIYKKSSNWTCKAIG 505 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCe----EEEEEEecccccCcCccceEEeeee
Confidence 45578999999999976543321122222222111 1113444333322 246666 5556678755422
Q ss_pred CccccccceE--EECCEEEEEeeecCCCCCcccceEEEEECCC
Q 048803 203 SRERDECKAV--FHCGKLLVIGGYSTNAQGRFERHAEAFDAAA 243 (289)
Q Consensus 203 ~~~~~~~~~~--~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~ 243 (289)
.......++. .-+|.+...+ . -+.|..||+.+
T Consensus 506 sy~k~~i~a~~fs~dGslla~s-~--------~~~Itiwd~~~ 539 (792)
T KOG1963|consen 506 SYHKTPITALCFSQDGSLLAVS-F--------DDTITIWDYDT 539 (792)
T ss_pred ccccCcccchhhcCCCcEEEEe-c--------CCEEEEecCCC
Confidence 2222222222 2356666665 2 24677788766
No 216
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=25.94 E-value=4.3e+02 Score=22.75 Aligned_cols=90 Identities=18% Similarity=0.335 Sum_probs=50.8
Q ss_pred cceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCccccc-cceE
Q 048803 134 SSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDE-CKAV 212 (289)
Q Consensus 134 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~ 212 (289)
..+-+++..|....+. +....| ..++.- +.|++.|.|..+. ++-.+|.+.+.-..+ -.++.. ...+
T Consensus 340 RTikvW~~st~efvRt--l~gHkR-GIAClQ-Yr~rlvVSGSSDn------tIRlwdi~~G~cLRv---LeGHEeLvRci 406 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRT--LNGHKR-GIACLQ-YRDRLVVSGSSDN------TIRLWDIECGACLRV---LEGHEELVRCI 406 (499)
T ss_pred ceEEEEeccceeeehh--hhcccc-cceehh-ccCeEEEecCCCc------eEEEEeccccHHHHH---HhchHHhhhhe
Confidence 3455677666654332 221122 222332 5888888876543 488888887743221 222221 2234
Q ss_pred EECCEEEEEeeecCCCCCcccceEEEEECCCC
Q 048803 213 FHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQ 244 (289)
Q Consensus 213 ~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~~~ 244 (289)
-++++-.+.||+++ .|.++|..+.
T Consensus 407 RFd~krIVSGaYDG--------kikvWdl~aa 430 (499)
T KOG0281|consen 407 RFDNKRIVSGAYDG--------KIKVWDLQAA 430 (499)
T ss_pred eecCceeeeccccc--------eEEEEecccc
Confidence 57888889999875 4666666543
No 217
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=25.87 E-value=1.2e+02 Score=16.26 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=14.1
Q ss_pred ceeEEEecCCEEEEEcCCCC
Q 048803 159 LFGCASDGDRTVYVAGGHDE 178 (289)
Q Consensus 159 ~~~~~~~~~~~iyv~GG~~~ 178 (289)
..+.++..+|.|||.|-...
T Consensus 15 ~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred EEEEEECCCCCEEEEEeecC
Confidence 45566655889999987544
No 218
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=25.81 E-value=4.4e+02 Score=23.93 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCCCCCCceeEEEEECCCCC--eEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCC
Q 048803 73 PKRFATPVYRITVLELGSGE--WSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGA 150 (289)
Q Consensus 73 ~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~ 150 (289)
+.-.....-.+..||..... ......-..|..+. +.+-.+..|+|--|++ ..+.+||....+-...-
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi----cfspsne~l~vsVG~D-------kki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI----CFSPSNEALLVSVGYD-------KKINIYDIRSQASTDRL 247 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc----eecCCccceEEEeccc-------ceEEEeeccccccccee
Q ss_pred CCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCC
Q 048803 151 DMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVAR 193 (289)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 193 (289)
.-. .|....+..- +|.+.++|...+. ++.||+..
T Consensus 248 ~y~-~Plstvaf~~--~G~~L~aG~s~G~------~i~YD~R~ 281 (673)
T KOG4378|consen 248 TYS-HPLSTVAFSE--CGTYLCAGNSKGE------LIAYDMRS 281 (673)
T ss_pred eec-CCcceeeecC--CceEEEeecCCce------EEEEeccc
No 219
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=25.12 E-value=5.4e+02 Score=23.63 Aligned_cols=195 Identities=12% Similarity=0.032 Sum_probs=96.4
Q ss_pred ceeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeE-EeCCCCCCCCcc
Q 048803 80 VYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATW-RRGADMPGGRRM 158 (289)
Q Consensus 80 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~ 158 (289)
.+.++++|..-+.--.+..+...-+- +++-.++++.|++-= +..+-+++.|+..-+= +.+..|..+-.+
T Consensus 303 ~N~lyVLD~~L~~vG~l~~la~gE~I----ysvRF~Gd~~Y~VTF------rqvDPLfviDLsdP~~P~vlGeLKIPGfS 372 (521)
T PF09826_consen 303 SNNLYVLDEDLKIVGSLEGLAPGERI----YSVRFMGDRAYLVTF------RQVDPLFVIDLSDPANPKVLGELKIPGFS 372 (521)
T ss_pred eEEEEEECCCCcEeEEccccCCCceE----EEEEEeCCeEEEEEE------eecCceEEEECCCCCCCceeeEEECccch
Confidence 37788888555544455555433222 255567888888732 3456788888876331 223334333222
Q ss_pred ceeEEEecCCEEEEEcCCCCCC---c--ccCceEEEEcCCCc-----eE-eC---CCCCccccccceEEE-C-CEEEEEe
Q 048803 159 LFGCASDGDRTVYVAGGHDEDK---N--ALKSAMAYDVARDE-----WA-SL---PDMSRERDECKAVFH-C-GKLLVIG 222 (289)
Q Consensus 159 ~~~~~~~~~~~iyv~GG~~~~~---~--~~~~~~~yd~~~~~-----W~-~~---~~~~~~~~~~~~~~~-~-~~l~~~g 222 (289)
.+-.-. .+++|.=+|--.... . ..-++..||...-+ -+ .+ ..-......|.+..+ . ..++.+-
T Consensus 373 ~YLHP~-~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~P 451 (521)
T PF09826_consen 373 DYLHPY-DENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFP 451 (521)
T ss_pred hceeEC-CCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEE
Confidence 222222 366666666443321 0 01245666655311 00 11 011122223333333 2 2344433
Q ss_pred eecCCCCCcccceEEEEECC-CCceeecccccccCCC------CCCceeeeeCCeEEEEeCceeecccCCccc
Q 048803 223 GYSTNAQGRFERHAEAFDAA-AQQWGPVEEDFMETAT------CPRSCAGVDSNDLYMCREGDVMALRCNTWQ 288 (289)
Q Consensus 223 G~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~------~~~~~~~~~~~~ly~~GG~~~~~~~~~~w~ 288 (289)
-.... .....+.+++|+.. .+.......+.+.... ..+ .+..++.||.+.+.....++.++|+
T Consensus 452 v~~~~-~~~~~~g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R--~lyi~d~lYtvS~~~i~~~~l~t~~ 521 (521)
T PF09826_consen 452 VSSSY-GYFNFQGAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQR--SLYIGDTLYTVSDNGIKAYDLNTLE 521 (521)
T ss_pred EEEcc-CccccceEEEEEEeCCCCeEEEEEEEccCcccccccceeE--EEEECCEEEEEECCEEEEEehHhcC
Confidence 22111 11123467777777 5666666554333211 122 3346999999999887777666553
No 220
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=24.81 E-value=3.9e+02 Score=21.89 Aligned_cols=96 Identities=10% Similarity=0.185 Sum_probs=46.4
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEE--EeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCcc
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLS--AVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRM 158 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~ 158 (289)
..+..||..+++=..+.....+.... +++ ..+++-...||.+ ..+-++|...-.-++.-..+ .+.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNV----taVgF~~dgrWMyTgseD-------gt~kIWdlR~~~~qR~~~~~-spV- 127 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNV----TAVGFQCDGRWMYTGSED-------GTVKIWDLRSLSCQRNYQHN-SPV- 127 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCce----EEEEEeecCeEEEecCCC-------ceEEEEeccCcccchhccCC-CCc-
Confidence 57788999887522222222222211 222 2356666667654 23566777663333332222 221
Q ss_pred ceeEEEec--CCEEEEEcCCCCCCcccCceEEEEcCCCceEe
Q 048803 159 LFGCASDG--DRTVYVAGGHDEDKNALKSAMAYDVARDEWAS 198 (289)
Q Consensus 159 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 198 (289)
...+.. ++.+++ |..+ ..+.+.|+..+.-..
T Consensus 128 --n~vvlhpnQteLis--~dqs-----g~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 128 --NTVVLHPNQTELIS--GDQS-----GNIRVWDLGENSCTH 160 (311)
T ss_pred --ceEEecCCcceEEe--ecCC-----CcEEEEEccCCcccc
Confidence 122223 333433 2222 248999999886653
No 221
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=24.81 E-value=3.8e+02 Score=21.76 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=36.5
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeE
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATW 146 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W 146 (289)
..+.+||-.+++.+++.-+....... ..+.+.+..++.|..+ ..+.+||...++-
T Consensus 123 ~s~r~wDCRS~s~ePiQildea~D~V----~Si~v~~heIvaGS~D-------GtvRtydiR~G~l 177 (307)
T KOG0316|consen 123 SSVRLWDCRSRSFEPIQILDEAKDGV----SSIDVAEHEIVAGSVD-------GTVRTYDIRKGTL 177 (307)
T ss_pred ceeEEEEcccCCCCccchhhhhcCce----eEEEecccEEEeeccC-------CcEEEEEeeccee
Confidence 56778888888777776666555543 4556666666666533 3477899877663
No 222
>PF09816 EAF: RNA polymerase II transcription elongation factor; InterPro: IPR019194 This entry represents the N-terminal domain of ELL-associated factor (Eaf) proteins, which act as transcriptional transactivators of ELL and ELL2 RNA Polymerase II (Pol II) transcriptional elongation factors [, , , ]. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. ELL and EAF1 are components of Cajal bodies, which have a role in leukemogenesis []. EAF1 also has the capacity to interact with ELL1 and ELL2. The N terminus of approx 120 of EAF1 has a region of high serine, aspartic acid, and glutamic acid residues [, ].
Probab=24.58 E-value=1.1e+02 Score=21.07 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEcCCCCCCcccCceEEEEcCCCceE
Q 048803 170 VYVAGGHDEDKNALKSAMAYDVARDEWA 197 (289)
Q Consensus 170 iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 197 (289)
.|++-|........+++.+||++++++.
T Consensus 65 ~~~f~G~~~~~~~~ecVLifD~~~~~f~ 92 (109)
T PF09816_consen 65 TYVFKGSQRPSKEKECVLIFDPETGEFV 92 (109)
T ss_pred cEEEEeccCCCCCcEEEEEEECCCCEEE
Confidence 4666664333334578999999999875
No 223
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=24.42 E-value=5.1e+02 Score=23.10 Aligned_cols=63 Identities=6% Similarity=0.075 Sum_probs=38.9
Q ss_pred CceeEEEEECCCCCeEeCCCCCCCC-CCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeE
Q 048803 79 PVYRITVLELGSGEWSELPPIPGFP-DGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATW 146 (289)
Q Consensus 79 ~~~~~~~~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W 146 (289)
+...+.++|..+++...+..+|... ... ..+..+-++++|+-=.... .....++.+||.|.+-
T Consensus 365 ~~~~laI~d~~~kt~t~V~glP~~~is~~--~~~~~ve~G~aYi~Vtt~~---g~~~~IY~iDp~TatA 428 (435)
T PF14298_consen 365 DAKKLAIFDVSNKTFTWVTGLPADLISGF--GNAPYVENGKAYIPVTTED---GSDPYIYKIDPATATA 428 (435)
T ss_pred ccceEEEEEccCceeEEeccCChhhcccc--ccceEeeCCEEEEEEeecC---CCceeEEEEcCccccc
Confidence 3467788999998888887777651 111 1134456777776432111 1135689999998764
No 224
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.34 E-value=6.3e+02 Score=24.11 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=44.2
Q ss_pred ceEEEEccCCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEEcCCCceEeCCCCCcccc--ccceE
Q 048803 135 SVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERD--ECKAV 212 (289)
Q Consensus 135 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~--~~~~~ 212 (289)
.+..+|..++.-.++=.=...+ ..+.+....|+..+.|+-+. .+..+|+.+..= +..+..-.. ..-..
T Consensus 558 tVRlWDv~~G~~VRiF~GH~~~--V~al~~Sp~Gr~LaSg~ed~------~I~iWDl~~~~~--v~~l~~Ht~ti~SlsF 627 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTGHKGP--VTALAFSPCGRYLASGDEDG------LIKIWDLANGSL--VKQLKGHTGTIYSLSF 627 (707)
T ss_pred eEEEEEcCCCcEEEEecCCCCc--eEEEEEcCCCceEeecccCC------cEEEEEcCCCcc--hhhhhcccCceeEEEE
Confidence 4556666666544332111112 22233323565555555433 378888887521 111111111 11122
Q ss_pred EECCEEEEEeeecCCCCCcccceEEEEECC
Q 048803 213 FHCGKLLVIGGYSTNAQGRFERHAEAFDAA 242 (289)
Q Consensus 213 ~~~~~l~~~gG~~~~~~~~~~~~v~~yd~~ 242 (289)
..+|.+++.||.+. .|-.+|..
T Consensus 628 S~dg~vLasgg~Dn--------sV~lWD~~ 649 (707)
T KOG0263|consen 628 SRDGNVLASGGADN--------SVRLWDLT 649 (707)
T ss_pred ecCCCEEEecCCCC--------eEEEEEch
Confidence 45899999998763 56666653
No 225
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=23.81 E-value=3e+02 Score=24.65 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=13.4
Q ss_pred CCEEEEEcCCCCCCcccCceEEEEcCCCce
Q 048803 167 DRTVYVAGGHDEDKNALKSAMAYDVARDEW 196 (289)
Q Consensus 167 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 196 (289)
.|.=++..+++. .+-.+|.+|++=
T Consensus 269 ~g~~fLS~sfD~------~lKlwDtETG~~ 292 (503)
T KOG0282|consen 269 CGTSFLSASFDR------FLKLWDTETGQV 292 (503)
T ss_pred cCCeeeeeecce------eeeeeccccceE
Confidence 445555555543 256667777643
No 226
>PRK10115 protease 2; Provisional
Probab=23.78 E-value=6.5e+02 Score=24.07 Aligned_cols=122 Identities=10% Similarity=0.000 Sum_probs=63.4
Q ss_pred EEEeCCEEEEEeCcCCCCcccccceEEEEcc-CCeEEeCCCCCCCCccceeEEEecCCEEEEEcCCCCCCcccCceEEEE
Q 048803 112 LSAVGPELVVIGGLDLTTWEASSSVFVFNII-SATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYD 190 (289)
Q Consensus 112 ~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 190 (289)
....++.+|+.--... ....+...+.. +.+|+.+-+.. ......+... .++.+++..-.. ....+..+|
T Consensus 275 ~~~~~~~ly~~tn~~~----~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~-~~~~l~~~~~~~----g~~~l~~~~ 344 (686)
T PRK10115 275 LDHYQHRFYLRSNRHG----KNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTL-FTDWLVVEERQR----GLTSLRQIN 344 (686)
T ss_pred EEeCCCEEEEEEcCCC----CCceEEEecCCCcccCeEEECCC-CCCEEEEEEE-ECCEEEEEEEeC----CEEEEEEEc
Confidence 3445678887743321 23446666766 57788775442 1222333444 366776664322 234578888
Q ss_pred cCCCceEeCCCCCccccccceEE----EC-CEEEEEe-eecCCCCCcccceEEEEECCCCceeeccc
Q 048803 191 VARDEWASLPDMSRERDECKAVF----HC-GKLLVIG-GYSTNAQGRFERHAEAFDAAAQQWGPVEE 251 (289)
Q Consensus 191 ~~~~~W~~~~~~~~~~~~~~~~~----~~-~~l~~~g-G~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 251 (289)
..++....+. ++.+... +... .+ +.+++.- +... -..++.||+.+++|+.+..
T Consensus 345 ~~~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~ss~~~------P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 345 RKTREVIGIA-FDDPAYV-TWIAYNPEPETSRLRYGYSSMTT------PDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CCCCceEEec-CCCCceE-eeecccCCCCCceEEEEEecCCC------CCEEEEEECCCCcEEEEEe
Confidence 7666555543 1111111 1111 12 3444332 2221 2478999999988887764
No 227
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=23.11 E-value=1e+02 Score=14.96 Aligned_cols=17 Identities=0% Similarity=0.020 Sum_probs=12.9
Q ss_pred eeeeCCeEEEEeCceee
Q 048803 264 AGVDSNDLYMCREGDVM 280 (289)
Q Consensus 264 ~~~~~~~ly~~GG~~~~ 280 (289)
+++.|++..++|+.+..
T Consensus 9 ~~v~D~~~~~iGs~N~~ 25 (28)
T smart00155 9 LMIVDDEIAYIGSANLD 25 (28)
T ss_pred EEEEcCCEEEEeCccCC
Confidence 55679999999987653
No 228
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.03 E-value=2.4e+02 Score=26.34 Aligned_cols=65 Identities=15% Similarity=0.348 Sum_probs=38.7
Q ss_pred CCEEEEEcCCCCCCcccCceEEEEcCCCceEeC--------CCCC-ccccccceEEE--CCEEEEEeeecCCCCCcccce
Q 048803 167 DRTVYVAGGHDEDKNALKSAMAYDVARDEWASL--------PDMS-RERDECKAVFH--CGKLLVIGGYSTNAQGRFERH 235 (289)
Q Consensus 167 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~--------~~~~-~~~~~~~~~~~--~~~l~~~gG~~~~~~~~~~~~ 235 (289)
+..+++.||.+.. +..+|..+..=+.+ .+++ .++.+.-+..+ .+-+++.||.+ +.
T Consensus 129 ~~~lvaSgGLD~~------IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte--------k~ 194 (735)
T KOG0308|consen 129 NNELVASGGLDRK------IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE--------KD 194 (735)
T ss_pred CceeEEecCCCcc------EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc--------cc
Confidence 7789999998764 77777775522222 2233 22222222233 34577777765 36
Q ss_pred EEEEECCCCc
Q 048803 236 AEAFDAAAQQ 245 (289)
Q Consensus 236 v~~yd~~~~~ 245 (289)
+..||+.+++
T Consensus 195 lr~wDprt~~ 204 (735)
T KOG0308|consen 195 LRLWDPRTCK 204 (735)
T ss_pred eEEecccccc
Confidence 8889998764
No 229
>PF15408 PH_7: Pleckstrin homology domain
Probab=22.82 E-value=85 Score=20.56 Aligned_cols=25 Identities=32% Similarity=0.763 Sum_probs=19.5
Q ss_pred hhHHHHHHHhhhHHhhhcChhHHHH
Q 048803 22 KQFATISSVCKGWKSEISRPEFRRN 46 (289)
Q Consensus 22 ~~l~~~~~v~k~W~~l~~~~~~~~~ 46 (289)
+-+..-+-+||+|-....+|.|.-.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~~~ 101 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFRVS 101 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhhhc
Confidence 3455668899999999999987543
No 230
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.73 E-value=5.2e+02 Score=22.63 Aligned_cols=108 Identities=16% Similarity=0.264 Sum_probs=43.7
Q ss_pred EEECCCCCe-EeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccceeEE
Q 048803 85 VLELGSGEW-SELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCA 163 (289)
Q Consensus 85 ~~d~~~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 163 (289)
.-||.|+.= .+|.+-+......+++..+-.-+++-++|++.. .....++..|+.+++-+++.+.+.... ..++.
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~----dg~~nly~lDL~t~~i~QLTdg~g~~~-~g~~~ 88 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF----DGNRNLYLLDLATGEITQLTDGPGDNT-FGGFL 88 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T----TSS-EEEEEETTT-EEEE---SS-B-T-TT-EE
T ss_pred EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc----CCCcceEEEEcccCEEEECccCCCCCc-cceEE
Confidence 357777642 344443331111111122333345444444432 135678999999999999988763222 22333
Q ss_pred EecCCEEEEE-cCCCCCCcccCceEEEEcCCCceEeCCCCCcc
Q 048803 164 SDGDRTVYVA-GGHDEDKNALKSAMAYDVARDEWASLPDMSRE 205 (289)
Q Consensus 164 ~~~~~~iyv~-GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 205 (289)
+..+..+|.+ .+ ..+...|++|.+=+.+-..|..
T Consensus 89 s~~~~~~~Yv~~~--------~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 89 SPDDRALYYVKNG--------RSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp -TTSSEEEEEETT--------TEEEEEETTT--EEEEEE--TT
T ss_pred ecCCCeEEEEECC--------CeEEEEECCcCcEEEEEECCcc
Confidence 3335666544 22 2478888888765555444443
No 231
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.48 E-value=4.5e+02 Score=21.78 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=43.3
Q ss_pred eEEEecCCEEEEE-cCCCC-CC----cccCceEEEEcCCCceEeC---C-CCCccccccceEEEC--------CEEEEEe
Q 048803 161 GCASDGDRTVYVA-GGHDE-DK----NALKSAMAYDVARDEWASL---P-DMSRERDECKAVFHC--------GKLLVIG 222 (289)
Q Consensus 161 ~~~~~~~~~iyv~-GG~~~-~~----~~~~~~~~yd~~~~~W~~~---~-~~~~~~~~~~~~~~~--------~~l~~~g 222 (289)
...+...++++|+ .|..+ .. .+..++..||++|++=... + ....+.....-.+++ +.+|+.-
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence 3444347889888 34321 11 3456899999999974322 2 222223333333332 2466654
Q ss_pred eecCCCCCcccceEEEEECCCCc-eeeccc
Q 048803 223 GYSTNAQGRFERHAEAFDAAAQQ-WGPVEE 251 (289)
Q Consensus 223 G~~~~~~~~~~~~v~~yd~~~~~-W~~~~~ 251 (289)
-. ...+.+||..+++ |+....
T Consensus 85 ~~--------~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 85 SG--------GPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp TT--------TCEEEEEETTTTEEEEEETC
T ss_pred CC--------cCcEEEEEccCCcEEEEecC
Confidence 22 1279999999975 555544
No 232
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=21.98 E-value=6.1e+02 Score=23.09 Aligned_cols=82 Identities=11% Similarity=0.191 Sum_probs=46.4
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..+..+||.++.=..-+++-.-+. ..+...++.+++++|..+.+ .-.+...|+.+-.-..-..-.....
T Consensus 375 s~LvllD~~tg~~l~~S~~~~Ir~-----r~~~~~~~~~vaI~g~~G~~---~ikLvlid~~tLev~kes~~~i~~~--- 443 (489)
T PF05262_consen 375 SELVLLDSDTGDTLKRSPVNGIRG-----RTFYEREDDLVAIAGCSGNA---AIKLVLIDPETLEVKKESEDEISWQ--- 443 (489)
T ss_pred eeEEEEeCCCCceecccccceecc-----ceeEEcCCCEEEEeccCCch---heEEEecCcccceeeeecccccccc---
Confidence 688899999986433344333232 25667888888888885443 3334445777766544443332222
Q ss_pred eEEEecCCEEEEE
Q 048803 161 GCASDGDRTVYVA 173 (289)
Q Consensus 161 ~~~~~~~~~iyv~ 173 (289)
+.-.+.++.+|++
T Consensus 444 S~l~~~~~~iyaV 456 (489)
T PF05262_consen 444 SSLIVDGQMIYAV 456 (489)
T ss_pred CceEEcCCeEEEE
Confidence 2222235666755
No 233
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=21.96 E-value=96 Score=15.43 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=10.5
Q ss_pred eeeeeCCeEEEEeCcee
Q 048803 263 CAGVDSNDLYMCREGDV 279 (289)
Q Consensus 263 ~~~~~~~~ly~~GG~~~ 279 (289)
.+.+.|+++..+||.|.
T Consensus 8 K~~vvD~~~a~vGg~nl 24 (28)
T PF00614_consen 8 KFVVVDDRVAFVGGANL 24 (28)
T ss_dssp -EEEETTTEEEEE---S
T ss_pred EEEEEcCCEEEECceec
Confidence 35667999999999764
No 234
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.32 E-value=6.3e+02 Score=22.98 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=46.7
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCCcccccceEEEEccCCeEEeCCCCCCCCccce
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 160 (289)
..+.+||..+.+ .+..+... +.....+.+-++.+...|..+ ..+..+|.....=. ...+..-...-+
T Consensus 239 g~v~iwD~~~~k--~~~~~~~~---h~~rvg~laW~~~~lssGsr~-------~~I~~~dvR~~~~~-~~~~~~H~qeVC 305 (484)
T KOG0305|consen 239 GTVQIWDVKEQK--KTRTLRGS---HASRVGSLAWNSSVLSSGSRD-------GKILNHDVRISQHV-VSTLQGHRQEVC 305 (484)
T ss_pred CeEEEEehhhcc--ccccccCC---cCceeEEEeccCceEEEecCC-------CcEEEEEEecchhh-hhhhhcccceee
Confidence 467777776553 22222221 111224555667777777643 33555665443210 011222233344
Q ss_pred eEEEecCCEEEEEcCCCCCCcccCceEEEEc
Q 048803 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDV 191 (289)
Q Consensus 161 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 191 (289)
+.....++...+-||.++ .+.++|.
T Consensus 306 gLkws~d~~~lASGgnDN------~~~Iwd~ 330 (484)
T KOG0305|consen 306 GLKWSPDGNQLASGGNDN------VVFIWDG 330 (484)
T ss_pred eeEECCCCCeeccCCCcc------ceEeccC
Confidence 555544777777777654 3777776
No 235
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.60 E-value=1.3e+02 Score=14.67 Aligned_cols=15 Identities=47% Similarity=0.756 Sum_probs=10.8
Q ss_pred eeEEEecCCEEEEEc
Q 048803 160 FGCASDGDRTVYVAG 174 (289)
Q Consensus 160 ~~~~~~~~~~iyv~G 174 (289)
++.++.-+|.|||.-
T Consensus 5 ~gvav~~~g~i~VaD 19 (28)
T PF01436_consen 5 HGVAVDSDGNIYVAD 19 (28)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred cEEEEeCCCCEEEEE
Confidence 556665689999983
No 236
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.48 E-value=5.6e+02 Score=22.11 Aligned_cols=107 Identities=10% Similarity=-0.014 Sum_probs=59.4
Q ss_pred eeEEEEECCCCCeEeCCCCCCCCCCCCceeEEEEeCCEEEEEeCcCCCC--cccccceEEEEccCCeEEeCCCCCCCCc-
Q 048803 81 YRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTT--WEASSSVFVFNIISATWRRGADMPGGRR- 157 (289)
Q Consensus 81 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~--~~~~~~~~~yd~~t~~W~~~~~~~~~~~- 157 (289)
..++++|..+.+-. ..++.....+ ..+.--+..||++-.+.... .+..+.+.+||..|.+-..--+++..|+
T Consensus 27 ~~v~ViD~~~~~v~--g~i~~G~~P~---~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVL--GMTDGGFLPN---PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEE--EEEEccCCCc---eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 57889999886543 3333333322 13334466899987642111 1356889999999988543222221222
Q ss_pred ----cceeEEEecCC-EEEEEcCCCCCCcccCceEEEEcCCCceE
Q 048803 158 ----MLFGCASDGDR-TVYVAGGHDEDKNALKSAMAYDVARDEWA 197 (289)
Q Consensus 158 ----~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 197 (289)
.....+..-+| .+||..- ...+.+.+.|.++++-.
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~-----~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQF-----SPSPAVGVVDLEGKAFV 141 (352)
T ss_pred hccCccceEEECCCCCEEEEecC-----CCCCEEEEEECCCCcEE
Confidence 11123322355 5777621 22456899999988764
No 237
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.09 E-value=5.4e+02 Score=21.73 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=46.7
Q ss_pred eeEEEec-CCEEEEEcCCCCCCcccCceEEEEcCCCceE-eCCCCCccc--cccceEEECCE-EEEEeeecCCCCCcccc
Q 048803 160 FGCASDG-DRTVYVAGGHDEDKNALKSAMAYDVARDEWA-SLPDMSRER--DECKAVFHCGK-LLVIGGYSTNAQGRFER 234 (289)
Q Consensus 160 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~--~~~~~~~~~~~-l~~~gG~~~~~~~~~~~ 234 (289)
|+.++.- +..+.+++-... .....||+.+.+=. .+.+ +..| ++|+...-+|+ ||..-. +... -..
T Consensus 8 H~~a~~p~~~~avafaRRPG-----~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEn-d~~~---g~G 77 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPG-----TFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTEN-DYET---GRG 77 (305)
T ss_pred cceeeCCCCCeEEEEEeCCC-----cEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEecc-ccCC---CcE
Confidence 4444433 566777765443 35899999988643 3333 3333 35666666665 444432 2211 235
Q ss_pred eEEEEECCCCceeeccc
Q 048803 235 HAEAFDAAAQQWGPVEE 251 (289)
Q Consensus 235 ~v~~yd~~~~~W~~~~~ 251 (289)
.|-+||.. +....+.+
T Consensus 78 ~IgVyd~~-~~~~ri~E 93 (305)
T PF07433_consen 78 VIGVYDAA-RGYRRIGE 93 (305)
T ss_pred EEEEEECc-CCcEEEeE
Confidence 78999997 56666655
Done!