Query 048807
Match_columns 757
No_of_seqs 886 out of 4199
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 13:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.9E-79 4E-84 711.8 72.9 629 75-750 54-683 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 9.2E-76 2E-80 681.0 66.7 602 114-756 53-657 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2E-69 4.3E-74 613.6 69.7 527 178-725 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.5E-68 3.2E-73 606.6 68.8 522 145-690 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.5E-63 3.2E-68 565.1 50.9 511 180-724 86-610 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.9E-62 6.2E-67 554.6 52.3 472 256-753 84-557 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-38 1.4E-42 373.2 81.6 593 122-750 304-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-36 5.8E-41 359.3 83.2 628 84-749 137-795 (899)
9 PRK11447 cellulose synthase su 100.0 1.2E-26 2.7E-31 276.4 73.7 620 74-722 61-745 (1157)
10 PRK11447 cellulose synthase su 100.0 1.6E-26 3.5E-31 275.3 74.1 593 126-750 41-737 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 3.7E-23 7.9E-28 235.0 72.1 574 125-749 56-702 (987)
12 PRK09782 bacteriophage N4 rece 99.9 7.2E-21 1.6E-25 216.4 71.2 603 86-749 58-736 (987)
13 KOG2002 TPR-containing nuclear 99.9 1.4E-21 3.1E-26 206.8 57.6 565 129-718 146-745 (1018)
14 KOG2002 TPR-containing nuclear 99.9 2E-21 4.4E-26 205.7 57.8 600 87-719 145-799 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 7.4E-24 1.6E-28 212.4 37.0 450 262-740 51-506 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 1.7E-22 3.6E-27 202.8 40.9 383 256-664 113-500 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 9.1E-20 2E-24 204.4 51.5 432 261-718 129-571 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-19 3.3E-24 202.6 52.0 427 295-750 128-568 (615)
19 PRK11788 tetratricopeptide rep 99.9 8.8E-21 1.9E-25 202.1 36.9 303 415-725 42-354 (389)
20 PRK11788 tetratricopeptide rep 99.9 2.9E-20 6.2E-25 198.1 36.4 236 373-617 110-352 (389)
21 PRK15174 Vi polysaccharide exp 99.9 2E-18 4.3E-23 192.7 47.3 332 264-613 47-382 (656)
22 PRK10049 pgaA outer membrane p 99.9 6.1E-18 1.3E-22 193.1 49.5 421 257-731 13-467 (765)
23 PRK15174 Vi polysaccharide exp 99.9 6.2E-18 1.3E-22 188.8 48.3 358 270-646 16-380 (656)
24 PRK10049 pgaA outer membrane p 99.9 6.2E-18 1.3E-22 193.0 48.5 403 237-693 28-464 (765)
25 PRK14574 hmsH outer membrane p 99.9 9.5E-16 2.1E-20 171.3 57.2 444 265-730 40-523 (822)
26 KOG0495 HAT repeat protein [RN 99.9 2.9E-14 6.4E-19 145.1 61.7 607 86-750 265-877 (913)
27 PRK14574 hmsH outer membrane p 99.8 2.7E-15 5.9E-20 167.7 55.9 434 153-646 39-512 (822)
28 KOG2076 RNA polymerase III tra 99.8 1.9E-14 4.2E-19 152.5 58.3 637 86-750 153-892 (895)
29 KOG0495 HAT repeat protein [RN 99.8 2.5E-13 5.5E-18 138.4 58.8 553 129-730 331-891 (913)
30 KOG2076 RNA polymerase III tra 99.8 6.2E-14 1.3E-18 148.7 55.7 620 114-754 138-851 (895)
31 KOG2003 TPR repeat-containing 99.8 1.1E-15 2.3E-20 148.7 35.8 471 257-747 199-716 (840)
32 KOG1915 Cell cycle control pro 99.8 1E-12 2.2E-17 129.2 52.2 471 259-751 107-623 (677)
33 KOG2003 TPR repeat-containing 99.8 9.6E-15 2.1E-19 142.1 37.1 484 145-704 198-709 (840)
34 KOG4422 Uncharacterized conser 99.8 3.6E-13 7.9E-18 130.7 44.9 428 259-719 116-591 (625)
35 KOG1915 Cell cycle control pro 99.7 1.7E-12 3.6E-17 127.7 48.6 454 258-735 72-551 (677)
36 KOG4422 Uncharacterized conser 99.7 2E-12 4.4E-17 125.6 43.8 242 256-507 204-462 (625)
37 KOG0547 Translocase of outer m 99.7 4.5E-13 9.8E-18 132.4 34.2 215 525-749 338-562 (606)
38 KOG1126 DNA-binding cell divis 99.7 2.3E-14 4.9E-19 147.5 24.7 289 163-476 334-624 (638)
39 KOG2047 mRNA splicing factor [ 99.6 2.7E-09 6E-14 109.4 57.4 563 149-748 103-718 (835)
40 KOG1155 Anaphase-promoting com 99.6 1.1E-11 2.4E-16 122.0 38.5 386 254-682 159-552 (559)
41 KOG1155 Anaphase-promoting com 99.6 6.1E-11 1.3E-15 116.9 43.4 364 326-716 161-534 (559)
42 TIGR00540 hemY_coli hemY prote 99.6 1.8E-12 3.9E-17 137.5 35.8 293 420-717 96-398 (409)
43 PRK10747 putative protoheme IX 99.6 3.7E-12 8E-17 134.3 37.5 286 421-717 97-389 (398)
44 KOG0547 Translocase of outer m 99.6 5.1E-12 1.1E-16 125.1 33.7 405 261-717 117-565 (606)
45 TIGR00540 hemY_coli hemY prote 99.6 4.8E-12 1E-16 134.3 35.6 288 454-749 95-395 (409)
46 PRK10747 putative protoheme IX 99.6 7.4E-12 1.6E-16 132.0 36.4 283 383-682 97-389 (398)
47 PF13429 TPR_15: Tetratricopep 99.6 6.9E-15 1.5E-19 148.2 12.6 262 264-540 13-275 (280)
48 COG2956 Predicted N-acetylgluc 99.6 8.4E-12 1.8E-16 117.4 30.7 291 308-611 49-346 (389)
49 KOG2047 mRNA splicing factor [ 99.6 6.7E-09 1.4E-13 106.7 53.7 541 128-704 117-709 (835)
50 KOG1126 DNA-binding cell divis 99.6 1.8E-12 3.9E-17 133.7 28.1 282 241-542 336-620 (638)
51 KOG1173 Anaphase-promoting com 99.6 6.4E-11 1.4E-15 119.8 38.1 470 243-736 35-534 (611)
52 PF13429 TPR_15: Tetratricopep 99.6 1.7E-14 3.7E-19 145.3 12.9 260 448-716 13-275 (280)
53 KOG1173 Anaphase-promoting com 99.6 8.7E-11 1.9E-15 118.9 38.7 477 258-754 15-520 (611)
54 COG2956 Predicted N-acetylgluc 99.5 2.7E-11 5.8E-16 114.0 30.4 290 421-718 48-347 (389)
55 KOG3785 Uncharacterized conser 99.5 3.8E-10 8.3E-15 107.3 38.0 199 268-489 31-230 (557)
56 KOG1156 N-terminal acetyltrans 99.5 3.4E-09 7.4E-14 109.2 46.6 448 242-715 25-508 (700)
57 COG3071 HemY Uncharacterized e 99.5 1.4E-10 3.1E-15 112.9 34.3 286 422-718 98-390 (400)
58 KOG4318 Bicoid mRNA stability 99.5 1E-10 2.2E-15 124.0 33.5 471 246-748 12-589 (1088)
59 KOG1156 N-terminal acetyltrans 99.5 7.6E-09 1.6E-13 106.7 44.9 459 262-750 11-508 (700)
60 COG3071 HemY Uncharacterized e 99.5 6.1E-10 1.3E-14 108.5 34.1 292 383-688 97-395 (400)
61 KOG4162 Predicted calmodulin-b 99.4 7.8E-08 1.7E-12 101.5 49.5 408 325-749 319-779 (799)
62 KOG2376 Signal recognition par 99.4 2.4E-08 5.1E-13 102.1 43.4 454 264-754 17-521 (652)
63 KOG4162 Predicted calmodulin-b 99.4 2E-08 4.4E-13 105.7 43.9 443 251-718 315-783 (799)
64 KOG3785 Uncharacterized conser 99.4 3E-09 6.6E-14 101.3 33.9 417 265-725 63-495 (557)
65 PRK12370 invasion protein regu 99.4 1.3E-10 2.8E-15 128.2 28.0 216 344-577 319-535 (553)
66 TIGR02521 type_IV_pilW type IV 99.4 3.1E-10 6.7E-15 111.3 27.5 200 548-751 31-230 (234)
67 TIGR02521 type_IV_pilW type IV 99.4 2.7E-10 5.9E-15 111.7 26.3 201 258-470 30-230 (234)
68 PRK12370 invasion protein regu 99.4 3.9E-10 8.4E-15 124.4 29.1 214 493-717 319-534 (553)
69 KOG1174 Anaphase-promoting com 99.3 8.7E-08 1.9E-12 93.6 39.9 274 439-724 228-504 (564)
70 KOG1174 Anaphase-promoting com 99.3 1.1E-07 2.5E-12 92.8 39.2 400 145-577 94-500 (564)
71 KOG0985 Vesicle coat protein c 99.3 2.6E-06 5.5E-11 92.3 51.7 541 148-736 606-1325(1666)
72 KOG3617 WD40 and TPR repeat-co 99.3 4.3E-07 9.3E-12 96.0 44.9 347 147-575 725-1107(1416)
73 PF12569 NARP1: NMDA receptor- 99.3 7.5E-08 1.6E-12 102.6 40.7 270 258-541 37-333 (517)
74 KOG4318 Bicoid mRNA stability 99.3 2.7E-08 5.8E-13 106.1 36.6 169 552-728 463-634 (1088)
75 KOG1840 Kinesin light chain [C 99.3 7.1E-10 1.5E-14 116.2 24.2 258 142-435 193-477 (508)
76 KOG1840 Kinesin light chain [C 99.3 9.4E-10 2E-14 115.3 25.1 252 254-505 194-477 (508)
77 KOG1129 TPR repeat-containing 99.3 8.6E-10 1.9E-14 103.9 22.1 234 482-724 227-462 (478)
78 KOG1127 TPR repeat-containing 99.3 8.5E-08 1.8E-12 103.5 39.8 474 265-749 568-1100(1238)
79 KOG3616 Selective LIM binding 99.3 6.4E-08 1.4E-12 100.6 36.9 192 486-712 740-931 (1636)
80 KOG1129 TPR repeat-containing 99.3 2.8E-10 6.2E-15 107.1 18.1 159 414-575 296-456 (478)
81 KOG1127 TPR repeat-containing 99.3 1.8E-07 4E-12 101.1 41.3 571 129-731 474-1116(1238)
82 KOG3616 Selective LIM binding 99.2 9.6E-07 2.1E-11 92.2 43.3 194 450-678 739-932 (1636)
83 KOG2376 Signal recognition par 99.2 1.7E-06 3.7E-11 88.8 44.3 446 235-715 23-517 (652)
84 PF12569 NARP1: NMDA receptor- 99.2 1.3E-07 2.9E-12 100.7 36.3 258 377-646 11-290 (517)
85 COG3063 PilF Tfp pilus assembl 99.2 1.8E-08 4E-13 91.1 24.7 200 261-472 37-236 (250)
86 COG3063 PilF Tfp pilus assembl 99.2 1.2E-08 2.6E-13 92.2 23.3 195 551-749 38-232 (250)
87 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-08 3.4E-13 102.1 26.6 215 241-473 43-266 (296)
88 PRK11189 lipoprotein NlpI; Pro 99.2 2.7E-08 5.7E-13 100.5 27.7 226 492-728 40-274 (296)
89 PF13041 PPR_2: PPR repeat fam 99.2 5.5E-11 1.2E-15 83.6 5.8 49 292-340 1-49 (50)
90 KOG3617 WD40 and TPR repeat-co 99.2 9.8E-06 2.1E-10 86.1 45.8 209 147-397 756-994 (1416)
91 PF13041 PPR_2: PPR repeat fam 99.1 1.1E-10 2.4E-15 82.0 6.6 50 406-455 1-50 (50)
92 KOG0548 Molecular co-chaperone 99.1 2.9E-07 6.3E-12 93.5 32.8 424 265-736 8-471 (539)
93 KOG0985 Vesicle coat protein c 99.1 3.8E-05 8.3E-10 83.6 50.2 289 415-750 1055-1367(1666)
94 KOG4340 Uncharacterized conser 99.1 2.7E-07 5.9E-12 86.3 27.7 315 297-643 13-335 (459)
95 cd05804 StaR_like StaR_like; a 99.1 8.2E-07 1.8E-11 93.3 35.2 199 294-506 6-214 (355)
96 cd05804 StaR_like StaR_like; a 99.1 1.1E-06 2.3E-11 92.4 35.5 202 369-575 5-213 (355)
97 KOG0548 Molecular co-chaperone 99.1 4.3E-06 9.3E-11 85.2 37.4 407 237-692 15-462 (539)
98 KOG4340 Uncharacterized conser 99.1 3.4E-07 7.4E-12 85.6 27.1 417 262-718 13-443 (459)
99 KOG1914 mRNA cleavage and poly 99.0 3.3E-05 7.2E-10 78.8 41.9 148 599-749 347-497 (656)
100 KOG0624 dsRNA-activated protei 99.0 1.8E-05 3.8E-10 76.0 34.7 319 257-613 36-371 (504)
101 PRK04841 transcriptional regul 99.0 5.8E-06 1.3E-10 98.6 40.0 370 335-718 347-760 (903)
102 PRK04841 transcriptional regul 98.9 5.5E-06 1.2E-10 98.8 39.4 370 375-750 346-757 (903)
103 KOG1914 mRNA cleavage and poly 98.9 0.0001 2.2E-09 75.4 42.1 428 256-717 17-500 (656)
104 KOG0624 dsRNA-activated protei 98.9 2E-05 4.4E-10 75.6 32.9 316 292-646 36-369 (504)
105 KOG1125 TPR repeat-containing 98.8 1.3E-07 2.8E-12 96.8 17.0 89 487-577 294-382 (579)
106 PF04733 Coatomer_E: Coatomer 98.8 1.3E-07 2.9E-12 93.9 16.2 253 453-724 11-269 (290)
107 KOG1125 TPR repeat-containing 98.8 5.4E-07 1.2E-11 92.4 19.9 240 256-506 285-526 (579)
108 KOG1070 rRNA processing protei 98.8 3E-06 6.6E-11 95.0 26.7 225 510-739 1455-1686(1710)
109 PF04733 Coatomer_E: Coatomer 98.8 2.6E-07 5.6E-12 91.8 16.5 247 339-610 11-263 (290)
110 PLN02789 farnesyltranstransfer 98.8 6E-06 1.3E-10 83.2 26.2 214 262-490 40-267 (320)
111 KOG2053 Mitochondrial inherita 98.8 0.00069 1.5E-08 73.8 46.6 527 192-754 20-609 (932)
112 KOG1070 rRNA processing protei 98.7 4.8E-06 1E-10 93.6 26.7 242 169-463 1445-1691(1710)
113 PLN02789 farnesyltranstransfer 98.7 1.6E-05 3.4E-10 80.2 27.7 204 342-560 50-267 (320)
114 KOG1128 Uncharacterized conser 98.7 1.7E-06 3.6E-11 91.2 18.8 222 366-612 394-616 (777)
115 TIGR03302 OM_YfiO outer membra 98.6 6E-06 1.3E-10 80.9 21.6 188 256-472 30-232 (235)
116 KOG1128 Uncharacterized conser 98.6 4E-06 8.6E-11 88.5 20.5 216 480-717 400-615 (777)
117 PF12854 PPR_1: PPR repeat 98.6 8E-08 1.7E-12 60.4 4.0 32 254-285 2-33 (34)
118 COG5010 TadD Flp pilus assembl 98.6 5.2E-06 1.1E-10 77.3 17.4 160 263-435 70-229 (257)
119 TIGR03302 OM_YfiO outer membra 98.5 1.5E-05 3.2E-10 78.1 21.1 187 546-754 31-233 (235)
120 COG5010 TadD Flp pilus assembl 98.5 2.5E-05 5.4E-10 72.9 20.5 159 552-715 70-228 (257)
121 PRK14720 transcript cleavage f 98.5 5.7E-05 1.2E-09 84.8 26.5 221 256-524 28-268 (906)
122 PRK15179 Vi polysaccharide bio 98.5 5.4E-05 1.2E-09 84.3 26.1 240 254-525 23-267 (694)
123 KOG2053 Mitochondrial inherita 98.5 0.0041 8.9E-08 68.0 48.6 223 87-324 24-256 (932)
124 PRK14720 transcript cleavage f 98.5 2.8E-05 6.2E-10 87.1 23.7 169 292-507 29-198 (906)
125 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.8E-12 58.4 4.1 31 650-680 3-33 (34)
126 PRK15179 Vi polysaccharide bio 98.5 5.4E-05 1.2E-09 84.3 25.6 171 267-450 57-229 (694)
127 PRK10370 formate-dependent nit 98.5 5.3E-06 1.2E-10 77.8 15.1 116 272-396 52-170 (198)
128 PRK15359 type III secretion sy 98.4 7.6E-06 1.7E-10 72.5 15.0 109 261-378 26-134 (144)
129 PRK10370 formate-dependent nit 98.4 3E-05 6.4E-10 72.8 19.5 119 307-437 52-173 (198)
130 COG4783 Putative Zn-dependent 98.4 0.00011 2.4E-09 74.7 23.4 147 296-472 308-454 (484)
131 PRK15359 type III secretion sy 98.4 1.9E-05 4.1E-10 70.0 15.9 106 280-397 14-119 (144)
132 KOG3081 Vesicle coat complex C 98.4 0.00056 1.2E-08 64.0 25.5 157 549-717 109-270 (299)
133 KOG3081 Vesicle coat complex C 98.3 0.00026 5.7E-09 66.1 22.4 49 563-612 188-236 (299)
134 COG4783 Putative Zn-dependent 98.3 0.00021 4.6E-09 72.6 23.7 138 558-718 316-454 (484)
135 KOG3060 Uncharacterized conser 98.2 0.0011 2.4E-08 61.6 23.4 187 422-612 26-220 (289)
136 TIGR02552 LcrH_SycD type III s 98.2 5.8E-05 1.3E-09 66.5 14.7 101 257-359 15-115 (135)
137 KOG3060 Uncharacterized conser 98.2 0.002 4.3E-08 60.0 24.2 156 557-717 61-219 (289)
138 TIGR02552 LcrH_SycD type III s 98.2 9.5E-05 2.1E-09 65.1 15.4 104 618-726 17-120 (135)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.4E-09 75.6 16.6 122 624-753 175-297 (395)
140 KOG2041 WD40 repeat protein [G 98.0 0.033 7.2E-07 59.2 32.9 363 292-715 690-1083(1189)
141 PF07079 DUF1347: Protein of u 98.0 0.028 6.1E-07 57.0 44.4 456 269-753 16-524 (549)
142 KOG2041 WD40 repeat protein [G 98.0 0.022 4.8E-07 60.5 29.7 369 256-681 689-1084(1189)
143 PF09976 TPR_21: Tetratricopep 97.9 0.00062 1.3E-08 60.6 16.4 86 626-714 56-143 (145)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00025 5.3E-09 73.1 15.4 128 258-397 168-295 (395)
145 PF09976 TPR_21: Tetratricopep 97.9 0.00054 1.2E-08 60.9 15.6 86 591-679 56-143 (145)
146 TIGR00756 PPR pentatricopeptid 97.9 1.9E-05 4.1E-10 50.4 4.0 33 296-328 2-34 (35)
147 KOG0550 Molecular chaperone (D 97.9 0.011 2.4E-07 59.1 24.3 273 338-646 58-349 (486)
148 PRK15363 pathogenicity island 97.8 0.00045 9.7E-09 60.2 12.8 99 258-358 34-132 (157)
149 COG4700 Uncharacterized protei 97.8 0.0084 1.8E-07 53.0 19.8 144 580-728 86-231 (251)
150 TIGR00756 PPR pentatricopeptid 97.8 4.6E-05 1E-09 48.6 4.5 33 656-688 2-34 (35)
151 cd00189 TPR Tetratricopeptide 97.7 0.00045 9.9E-09 55.9 11.2 96 261-358 2-97 (100)
152 KOG0550 Molecular chaperone (D 97.7 0.0061 1.3E-07 60.8 20.0 330 411-749 52-419 (486)
153 PF13812 PPR_3: Pentatricopept 97.7 6E-05 1.3E-09 47.7 4.1 33 295-327 2-34 (34)
154 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0011 2.4E-08 56.6 13.3 99 261-359 4-106 (119)
155 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.3E-08 66.3 14.8 131 295-437 2-136 (280)
156 PF13812 PPR_3: Pentatricopept 97.7 8.6E-05 1.9E-09 46.9 4.5 32 656-687 3-34 (34)
157 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.093 2E-06 53.2 33.5 146 583-735 397-546 (660)
158 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0024 5.2E-08 54.5 14.2 99 620-718 4-105 (119)
159 PF14938 SNAP: Soluble NSF att 97.6 0.012 2.6E-07 59.0 21.1 129 377-505 121-264 (282)
160 cd00189 TPR Tetratricopeptide 97.6 0.0011 2.5E-08 53.5 11.5 93 333-436 4-96 (100)
161 PLN03088 SGT1, suppressor of 97.6 0.0017 3.8E-08 67.2 15.0 93 265-359 8-100 (356)
162 PRK02603 photosystem I assembl 97.5 0.0026 5.6E-08 58.5 14.3 86 258-344 34-121 (172)
163 PRK10153 DNA-binding transcrip 97.5 0.0054 1.2E-07 66.4 18.7 70 653-726 419-488 (517)
164 PF14938 SNAP: Soluble NSF att 97.5 0.023 5E-07 57.0 22.1 61 551-611 158-224 (282)
165 PLN03088 SGT1, suppressor of 97.5 0.0025 5.5E-08 66.0 15.5 86 629-717 13-98 (356)
166 KOG0553 TPR repeat-containing 97.5 0.0011 2.4E-08 63.4 11.5 129 591-725 89-222 (304)
167 PF05843 Suf: Suppressor of fo 97.5 0.0013 2.8E-08 65.7 12.8 129 260-397 2-134 (280)
168 PF12895 Apc3: Anaphase-promot 97.5 0.00015 3.2E-09 57.5 4.9 82 272-355 2-84 (84)
169 PF10037 MRP-S27: Mitochondria 97.5 0.0016 3.5E-08 67.5 13.6 124 543-667 61-186 (429)
170 CHL00033 ycf3 photosystem I as 97.5 0.0016 3.4E-08 59.7 12.3 95 294-395 35-138 (168)
171 COG3898 Uncharacterized membra 97.5 0.14 3E-06 51.1 31.9 251 456-722 133-396 (531)
172 KOG1130 Predicted G-alpha GTPa 97.5 0.0038 8.3E-08 61.9 14.8 288 337-646 25-343 (639)
173 PF10037 MRP-S27: Mitochondria 97.5 0.0019 4E-08 67.0 13.4 126 401-526 59-186 (429)
174 PRK15363 pathogenicity island 97.5 0.0056 1.2E-07 53.5 14.2 92 553-646 40-131 (157)
175 PRK10866 outer membrane biogen 97.5 0.059 1.3E-06 52.4 23.0 177 554-751 38-239 (243)
176 KOG0553 TPR repeat-containing 97.5 0.0015 3.2E-08 62.6 11.5 99 267-375 89-187 (304)
177 PF12895 Apc3: Anaphase-promot 97.5 0.00026 5.6E-09 56.1 5.6 78 668-748 3-82 (84)
178 KOG1130 Predicted G-alpha GTPa 97.4 0.003 6.4E-08 62.7 13.7 269 267-541 25-343 (639)
179 PF01535 PPR: PPR repeat; Int 97.4 0.00013 2.9E-09 44.9 3.0 28 296-323 2-29 (31)
180 COG4700 Uncharacterized protei 97.4 0.032 6.9E-07 49.5 18.1 131 614-749 85-218 (251)
181 PF01535 PPR: PPR repeat; Int 97.4 0.00017 3.7E-09 44.4 3.2 29 656-684 2-30 (31)
182 KOG1538 Uncharacterized conser 97.4 0.021 4.5E-07 60.1 19.8 100 148-284 556-657 (1081)
183 PRK02603 photosystem I assembl 97.4 0.0069 1.5E-07 55.7 15.0 131 293-458 34-166 (172)
184 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.2 4.4E-06 50.8 39.6 92 244-340 29-120 (660)
185 PRK10866 outer membrane biogen 97.4 0.048 1E-06 53.0 21.3 182 261-470 34-239 (243)
186 PRK10153 DNA-binding transcrip 97.4 0.018 4E-07 62.4 20.1 124 564-693 358-490 (517)
187 CHL00033 ycf3 photosystem I as 97.3 0.0044 9.4E-08 56.8 12.7 27 656-682 74-100 (168)
188 PF12688 TPR_5: Tetratrico pep 97.2 0.013 2.8E-07 49.4 13.3 56 302-357 9-66 (120)
189 KOG1538 Uncharacterized conser 97.2 0.048 1E-06 57.5 19.5 87 584-682 748-845 (1081)
190 PF13432 TPR_16: Tetratricopep 97.2 0.0016 3.5E-08 48.5 6.9 58 265-323 3-60 (65)
191 COG4235 Cytochrome c biogenesi 97.1 0.015 3.3E-07 56.2 14.5 96 293-396 155-253 (287)
192 PF13414 TPR_11: TPR repeat; P 97.1 0.0019 4.1E-08 48.8 7.0 64 653-717 2-66 (69)
193 PF08579 RPM2: Mitochondrial r 97.1 0.0059 1.3E-07 49.4 9.7 81 261-341 27-116 (120)
194 PF12688 TPR_5: Tetratrico pep 97.1 0.035 7.6E-07 46.8 15.0 57 590-646 8-66 (120)
195 PF13414 TPR_11: TPR repeat; P 97.1 0.0019 4.2E-08 48.8 6.9 63 259-322 3-66 (69)
196 KOG2114 Vacuolar assembly/sort 97.1 0.41 8.9E-06 52.7 25.9 178 262-469 337-516 (933)
197 PF13432 TPR_16: Tetratricopep 97.1 0.0028 6E-08 47.2 7.4 57 660-717 3-59 (65)
198 KOG1258 mRNA processing protei 97.0 0.61 1.3E-05 49.6 37.6 134 258-397 44-178 (577)
199 PF14559 TPR_19: Tetratricopep 97.0 0.0018 3.9E-08 48.8 5.7 61 270-333 2-62 (68)
200 PF14559 TPR_19: Tetratricopep 97.0 0.0033 7.1E-08 47.3 7.0 63 665-730 2-64 (68)
201 KOG2796 Uncharacterized conser 97.0 0.35 7.5E-06 45.7 23.4 132 445-577 179-315 (366)
202 PF06239 ECSIT: Evolutionarily 97.0 0.02 4.4E-07 52.5 12.9 50 546-595 45-99 (228)
203 KOG2280 Vacuolar assembly/sort 96.9 0.84 1.8E-05 49.8 27.3 331 375-748 442-794 (829)
204 PF08579 RPM2: Mitochondrial r 96.9 0.014 3.1E-07 47.2 10.4 43 414-456 31-74 (120)
205 COG4235 Cytochrome c biogenesi 96.9 0.022 4.7E-07 55.2 13.0 102 256-359 153-257 (287)
206 KOG2280 Vacuolar assembly/sort 96.9 0.98 2.1E-05 49.3 27.8 346 322-714 425-795 (829)
207 PF13525 YfiO: Outer membrane 96.8 0.23 5E-06 47.0 20.0 62 375-437 10-71 (203)
208 PF13525 YfiO: Outer membrane 96.8 0.2 4.4E-06 47.3 19.1 62 411-472 8-71 (203)
209 PF06239 ECSIT: Evolutionarily 96.8 0.035 7.7E-07 51.0 12.8 105 580-704 44-153 (228)
210 PRK10803 tol-pal system protei 96.7 0.028 6.1E-07 55.1 12.7 99 259-358 143-246 (263)
211 KOG1258 mRNA processing protei 96.7 1.2 2.5E-05 47.6 35.9 185 512-703 296-489 (577)
212 PF07079 DUF1347: Protein of u 96.6 1 2.2E-05 46.2 45.5 58 656-715 462-521 (549)
213 KOG2796 Uncharacterized conser 96.6 0.67 1.4E-05 43.9 23.3 128 588-717 182-314 (366)
214 PF13371 TPR_9: Tetratricopept 96.6 0.012 2.6E-07 44.9 7.6 57 267-324 3-59 (73)
215 PRK15331 chaperone protein Sic 96.6 0.033 7.2E-07 49.0 10.8 92 265-358 43-134 (165)
216 PRK10803 tol-pal system protei 96.5 0.047 1E-06 53.6 13.0 98 621-718 146-246 (263)
217 COG3898 Uncharacterized membra 96.5 1 2.3E-05 45.2 32.5 292 373-683 85-392 (531)
218 PF04840 Vps16_C: Vps16, C-ter 96.5 1.2 2.6E-05 45.1 30.3 79 520-608 184-262 (319)
219 PF13281 DUF4071: Domain of un 96.4 1.1 2.3E-05 46.0 21.8 78 411-488 144-227 (374)
220 KOG1920 IkappaB kinase complex 96.4 1.9 4.1E-05 49.8 25.3 26 481-506 793-820 (1265)
221 PF13371 TPR_9: Tetratricopept 96.3 0.025 5.5E-07 43.1 8.1 61 662-725 3-63 (73)
222 PF03704 BTAD: Bacterial trans 96.3 0.18 3.9E-06 44.7 14.6 58 373-434 65-122 (146)
223 PF13424 TPR_12: Tetratricopep 96.3 0.008 1.7E-07 46.7 5.0 62 656-717 7-74 (78)
224 KOG0543 FKBP-type peptidyl-pro 96.2 0.14 3E-06 51.7 14.4 139 188-358 215-355 (397)
225 PF04840 Vps16_C: Vps16, C-ter 96.2 1.7 3.6E-05 44.1 30.4 109 480-608 179-287 (319)
226 KOG0543 FKBP-type peptidyl-pro 96.2 0.1 2.2E-06 52.7 13.0 125 265-397 214-353 (397)
227 PF03704 BTAD: Bacterial trans 96.1 0.26 5.6E-06 43.7 14.7 57 447-504 66-122 (146)
228 PF13281 DUF4071: Domain of un 96.1 1.2 2.5E-05 45.7 20.5 98 375-472 146-255 (374)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.12 2.7E-06 53.4 13.3 67 256-323 72-141 (453)
230 COG0457 NrfG FOG: TPR repeat [ 96.0 1.6 3.4E-05 41.9 30.4 201 513-718 59-265 (291)
231 PRK15331 chaperone protein Sic 95.9 0.51 1.1E-05 41.8 14.8 88 522-611 46-133 (165)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.083 1.8E-06 54.6 11.4 65 616-683 73-141 (453)
233 PF12921 ATP13: Mitochondrial 95.8 0.14 3.1E-06 43.6 10.9 80 584-663 3-97 (126)
234 KOG1585 Protein required for f 95.8 1.7 3.6E-05 40.9 18.8 203 297-535 34-249 (308)
235 PF13424 TPR_12: Tetratricopep 95.8 0.045 9.8E-07 42.4 7.3 64 371-435 6-73 (78)
236 KOG1941 Acetylcholine receptor 95.7 0.34 7.4E-06 47.9 14.1 229 488-716 16-273 (518)
237 KOG2114 Vacuolar assembly/sort 95.7 4.5 9.8E-05 45.1 24.7 178 373-574 337-516 (933)
238 KOG2610 Uncharacterized conser 95.7 0.19 4.2E-06 49.0 12.2 155 270-433 114-272 (491)
239 COG4105 ComL DNA uptake lipopr 95.6 2.3 5E-05 40.6 19.9 55 695-750 173-230 (254)
240 KOG1941 Acetylcholine receptor 95.6 2 4.4E-05 42.7 18.6 128 554-681 128-273 (518)
241 PF09205 DUF1955: Domain of un 95.5 0.93 2E-05 38.1 13.7 139 560-721 14-152 (161)
242 PF10300 DUF3808: Protein of u 95.5 0.8 1.7E-05 49.5 17.8 116 632-751 247-374 (468)
243 COG3118 Thioredoxin domain-con 95.5 1.9 4.2E-05 41.9 17.9 54 268-322 143-196 (304)
244 COG3118 Thioredoxin domain-con 95.4 1.7 3.7E-05 42.3 17.2 152 303-467 143-296 (304)
245 PF12921 ATP13: Mitochondrial 95.4 0.33 7.3E-06 41.4 11.5 100 617-737 1-101 (126)
246 PRK11906 transcriptional regul 95.4 0.46 1E-05 49.4 14.4 144 598-748 273-431 (458)
247 PRK11906 transcriptional regul 95.3 0.77 1.7E-05 47.8 15.9 81 275-357 274-366 (458)
248 PF10345 Cohesin_load: Cohesin 95.3 6.8 0.00015 44.2 43.5 441 293-750 29-603 (608)
249 PF10300 DUF3808: Protein of u 95.3 0.8 1.7E-05 49.5 16.8 133 297-437 191-334 (468)
250 KOG4555 TPR repeat-containing 95.1 0.35 7.5E-06 40.4 10.2 93 626-720 51-146 (175)
251 smart00299 CLH Clathrin heavy 95.1 1.7 3.7E-05 38.1 15.8 41 589-630 13-53 (140)
252 COG4105 ComL DNA uptake lipopr 95.1 3.3 7.2E-05 39.6 21.8 57 380-437 44-100 (254)
253 smart00299 CLH Clathrin heavy 95.0 1.5 3.3E-05 38.4 15.2 126 263-420 11-137 (140)
254 KOG1585 Protein required for f 94.9 3.5 7.5E-05 38.9 19.3 205 410-641 33-250 (308)
255 PF04184 ST7: ST7 protein; In 94.9 2.6 5.7E-05 44.1 17.9 56 589-644 265-321 (539)
256 COG1729 Uncharacterized protei 94.8 0.53 1.1E-05 45.3 12.1 97 261-358 144-244 (262)
257 PF13428 TPR_14: Tetratricopep 94.7 0.092 2E-06 35.2 5.2 40 261-301 3-42 (44)
258 KOG2610 Uncharacterized conser 94.7 0.85 1.8E-05 44.7 13.1 157 523-682 113-275 (491)
259 COG0457 NrfG FOG: TPR repeat [ 94.6 4.3 9.3E-05 38.7 33.4 202 478-683 59-265 (291)
260 PF08631 SPO22: Meiosis protei 94.6 5.4 0.00012 39.8 26.3 19 698-716 255-273 (278)
261 PF04053 Coatomer_WDAD: Coatom 94.6 0.95 2.1E-05 48.1 14.8 159 378-573 269-427 (443)
262 COG1729 Uncharacterized protei 94.4 0.6 1.3E-05 44.9 11.5 59 624-682 184-243 (262)
263 KOG4555 TPR repeat-containing 94.4 0.59 1.3E-05 39.1 9.7 92 338-438 52-145 (175)
264 KOG1550 Extracellular protein 94.2 11 0.00024 41.8 27.1 176 275-473 228-427 (552)
265 PF09205 DUF1955: Domain of un 94.1 3.2 6.9E-05 35.0 13.7 56 417-473 95-150 (161)
266 PF04053 Coatomer_WDAD: Coatom 94.0 2 4.3E-05 45.8 15.7 130 551-714 298-427 (443)
267 KOG1550 Extracellular protein 94.0 12 0.00027 41.5 27.1 177 423-613 227-427 (552)
268 COG2909 MalT ATP-dependent tra 94.0 14 0.00029 41.9 29.4 228 522-749 424-684 (894)
269 PF08631 SPO22: Meiosis protei 94.0 7.4 0.00016 38.9 27.3 17 732-748 254-270 (278)
270 KOG2396 HAT (Half-A-TPR) repea 94.0 9.5 0.00021 40.1 39.1 88 243-333 90-178 (568)
271 KOG1920 IkappaB kinase complex 93.3 21 0.00045 41.9 27.4 134 553-715 913-1052(1265)
272 PF13512 TPR_18: Tetratricopep 93.3 3.9 8.5E-05 35.4 13.3 77 265-341 16-94 (142)
273 PF04184 ST7: ST7 protein; In 93.2 7.1 0.00015 41.1 17.2 150 448-612 173-324 (539)
274 PF13428 TPR_14: Tetratricopep 93.1 0.29 6.3E-06 32.7 5.2 40 331-377 3-42 (44)
275 COG4785 NlpI Lipoprotein NlpI, 92.9 5.2 0.00011 37.0 14.0 161 258-437 98-266 (297)
276 KOG3941 Intermediate in Toll s 92.7 0.98 2.1E-05 43.2 9.6 88 615-703 64-172 (406)
277 KOG2066 Vacuolar assembly/sort 92.6 20 0.00044 39.9 26.8 103 376-490 362-467 (846)
278 PF10602 RPN7: 26S proteasome 92.4 1.7 3.7E-05 39.8 10.8 99 260-358 37-142 (177)
279 KOG3941 Intermediate in Toll s 92.4 2.6 5.6E-05 40.5 11.8 105 510-633 64-173 (406)
280 COG3629 DnrI DNA-binding trans 92.3 1.2 2.7E-05 43.5 10.1 78 260-338 154-236 (280)
281 COG4785 NlpI Lipoprotein NlpI, 92.2 9.7 0.00021 35.3 15.1 180 273-472 79-266 (297)
282 PF13176 TPR_7: Tetratricopept 91.7 0.41 8.8E-06 30.3 4.2 26 691-716 1-26 (36)
283 PF13431 TPR_17: Tetratricopep 91.6 0.27 5.7E-06 30.7 3.2 31 283-314 3-33 (34)
284 PF04097 Nic96: Nup93/Nic96; 91.3 19 0.00042 40.5 19.7 59 265-324 117-182 (613)
285 PF04097 Nic96: Nup93/Nic96; 91.3 16 0.00036 41.1 19.1 61 373-437 114-181 (613)
286 PF09613 HrpB1_HrpK: Bacterial 91.0 11 0.00023 33.5 13.7 50 630-682 22-72 (160)
287 COG4649 Uncharacterized protei 90.8 12 0.00025 33.5 14.6 123 559-682 69-195 (221)
288 KOG4648 Uncharacterized conser 90.7 1.2 2.5E-05 43.9 8.0 91 266-358 104-194 (536)
289 PRK09687 putative lyase; Provi 90.7 19 0.00042 35.9 29.3 233 477-735 36-278 (280)
290 COG3629 DnrI DNA-binding trans 90.5 2.9 6.3E-05 41.0 10.6 78 549-627 154-236 (280)
291 PF00515 TPR_1: Tetratricopept 90.3 0.73 1.6E-05 28.5 4.4 27 691-717 3-29 (34)
292 PF13512 TPR_18: Tetratricopep 90.3 12 0.00025 32.6 13.2 80 376-456 16-95 (142)
293 PF10602 RPN7: 26S proteasome 90.2 4.9 0.00011 36.9 11.5 97 619-716 37-140 (177)
294 PF08424 NRDE-2: NRDE-2, neces 90.1 24 0.00052 36.1 17.9 78 311-396 48-128 (321)
295 PF13176 TPR_7: Tetratricopept 90.1 0.66 1.4E-05 29.3 4.1 23 297-319 2-24 (36)
296 KOG2066 Vacuolar assembly/sort 89.9 37 0.00081 37.9 29.0 56 266-321 363-419 (846)
297 PF13170 DUF4003: Protein of u 89.6 25 0.00053 35.4 19.4 147 565-714 79-242 (297)
298 PF13170 DUF4003: Protein of u 89.5 25 0.00054 35.3 19.7 131 531-664 80-227 (297)
299 PF13431 TPR_17: Tetratricopep 89.5 0.55 1.2E-05 29.3 3.2 32 352-390 2-33 (34)
300 PF07719 TPR_2: Tetratricopept 89.3 0.98 2.1E-05 27.8 4.4 27 691-717 3-29 (34)
301 COG1747 Uncharacterized N-term 89.0 34 0.00073 36.3 25.8 182 510-699 63-249 (711)
302 KOG2062 26S proteasome regulat 89.0 42 0.00092 37.3 35.6 30 326-358 210-239 (929)
303 PRK09687 putative lyase; Provi 88.5 28 0.00062 34.7 28.7 233 367-627 34-276 (280)
304 KOG1586 Protein required for f 88.3 23 0.0005 33.4 21.9 25 451-475 162-186 (288)
305 PF07035 Mic1: Colon cancer-as 88.2 19 0.00041 32.4 15.5 34 244-277 14-47 (167)
306 KOG0276 Vesicle coat complex C 88.2 3.9 8.4E-05 43.7 10.1 97 382-502 649-745 (794)
307 COG3947 Response regulator con 88.2 27 0.00059 34.1 15.8 68 658-726 283-355 (361)
308 PF10345 Cohesin_load: Cohesin 88.1 52 0.0011 37.2 43.3 447 257-716 28-604 (608)
309 PF09613 HrpB1_HrpK: Bacterial 88.0 19 0.00041 32.0 13.7 72 266-340 17-88 (160)
310 COG2976 Uncharacterized protei 87.6 23 0.00049 32.5 13.3 90 625-719 96-189 (207)
311 COG1747 Uncharacterized N-term 86.9 46 0.00099 35.4 25.7 181 546-736 64-251 (711)
312 PF02259 FAT: FAT domain; Int 86.7 42 0.00091 34.7 24.0 65 582-646 145-212 (352)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 86.4 6.7 0.00015 31.1 8.0 62 670-732 23-84 (103)
314 COG4649 Uncharacterized protei 86.2 25 0.00053 31.5 16.2 52 595-646 144-195 (221)
315 PF00515 TPR_1: Tetratricopept 86.0 1.8 3.8E-05 26.7 4.2 28 261-288 3-30 (34)
316 KOG4648 Uncharacterized conser 85.6 2.5 5.5E-05 41.7 6.7 54 590-645 104-158 (536)
317 KOG4234 TPR repeat-containing 85.4 9.2 0.0002 35.0 9.6 86 593-682 105-196 (271)
318 PF00637 Clathrin: Region in C 85.4 0.021 4.6E-07 50.6 -7.0 50 592-641 16-65 (143)
319 KOG2396 HAT (Half-A-TPR) repea 85.4 55 0.0012 34.8 39.1 90 280-378 92-182 (568)
320 PF06552 TOM20_plant: Plant sp 85.1 12 0.00026 33.8 10.2 41 670-718 96-136 (186)
321 PF07575 Nucleopor_Nup85: Nup8 84.8 35 0.00075 38.2 16.4 27 258-285 148-174 (566)
322 KOG4570 Uncharacterized conser 84.6 12 0.00025 36.9 10.5 97 548-646 64-163 (418)
323 KOG0276 Vesicle coat complex C 84.1 12 0.00026 40.3 11.1 99 454-573 648-746 (794)
324 PF02284 COX5A: Cytochrome c o 84.1 6.9 0.00015 31.4 7.3 59 672-731 28-86 (108)
325 PF07035 Mic1: Colon cancer-as 83.8 33 0.00071 30.9 15.2 33 429-461 15-47 (167)
326 COG2909 MalT ATP-dependent tra 83.6 89 0.0019 35.8 27.1 227 453-679 425-684 (894)
327 KOG4234 TPR repeat-containing 83.1 23 0.0005 32.5 11.0 93 266-359 102-198 (271)
328 PF07719 TPR_2: Tetratricopept 82.4 3.1 6.7E-05 25.5 4.2 27 262-288 4-30 (34)
329 PF13374 TPR_10: Tetratricopep 82.4 3.4 7.3E-05 26.8 4.6 28 690-717 3-30 (42)
330 PF11207 DUF2989: Protein of u 82.1 14 0.0003 34.2 9.5 79 665-745 118-199 (203)
331 PF06552 TOM20_plant: Plant sp 81.9 13 0.00028 33.6 9.1 63 670-736 51-125 (186)
332 PF13181 TPR_8: Tetratricopept 81.6 2.8 6E-05 25.8 3.7 27 691-717 3-29 (34)
333 PF13374 TPR_10: Tetratricopep 81.5 3.5 7.5E-05 26.7 4.4 26 296-321 4-29 (42)
334 KOG4570 Uncharacterized conser 81.2 13 0.00028 36.6 9.3 101 580-683 61-164 (418)
335 PF11207 DUF2989: Protein of u 81.1 15 0.00033 34.0 9.4 72 387-462 123-197 (203)
336 COG4455 ImpE Protein of avirul 80.9 10 0.00022 35.3 8.1 79 331-417 3-81 (273)
337 PF02284 COX5A: Cytochrome c o 79.7 16 0.00035 29.4 7.8 49 601-649 28-76 (108)
338 KOG4507 Uncharacterized conser 79.4 12 0.00026 40.1 9.2 105 269-381 617-721 (886)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 78.6 17 0.00036 29.0 7.6 49 598-646 22-70 (103)
340 PF10579 Rapsyn_N: Rapsyn N-te 78.4 6 0.00013 30.1 5.0 46 666-711 18-65 (80)
341 PF13174 TPR_6: Tetratricopept 77.6 3.8 8.2E-05 24.8 3.4 23 695-717 6-28 (33)
342 COG0790 FOG: TPR repeat, SEL1 77.2 83 0.0018 31.5 23.7 83 271-359 53-143 (292)
343 COG0790 FOG: TPR repeat, SEL1 76.2 89 0.0019 31.3 25.3 83 636-726 173-274 (292)
344 PF00637 Clathrin: Region in C 76.1 1.4 3E-05 38.9 1.4 84 265-355 13-96 (143)
345 KOG2063 Vacuolar assembly/sort 76.0 1.5E+02 0.0033 34.5 17.3 26 372-397 506-531 (877)
346 PRK15180 Vi polysaccharide bio 75.2 20 0.00043 37.4 9.2 123 304-438 299-421 (831)
347 PF07721 TPR_4: Tetratricopept 75.0 4 8.6E-05 23.5 2.7 21 185-205 5-25 (26)
348 PRK11619 lytic murein transgly 75.0 1.6E+02 0.0034 33.6 37.7 47 627-677 416-462 (644)
349 PRK15180 Vi polysaccharide bio 74.4 1.2E+02 0.0026 32.0 29.9 122 266-397 296-418 (831)
350 TIGR02561 HrpB1_HrpK type III 73.7 62 0.0014 28.4 11.7 54 270-324 21-74 (153)
351 TIGR02561 HrpB1_HrpK type III 73.6 63 0.0014 28.4 11.8 53 382-438 22-74 (153)
352 KOG4642 Chaperone-dependent E3 73.5 47 0.001 31.6 10.3 118 593-715 20-143 (284)
353 PF07163 Pex26: Pex26 protein; 73.5 42 0.0009 32.8 10.3 86 625-712 90-181 (309)
354 PF02259 FAT: FAT domain; Int 73.3 1.2E+02 0.0025 31.3 26.5 65 477-541 145-212 (352)
355 PF13181 TPR_8: Tetratricopept 72.2 10 0.00022 23.1 4.3 27 296-322 3-29 (34)
356 COG4455 ImpE Protein of avirul 71.9 31 0.00067 32.2 8.7 59 298-357 5-63 (273)
357 PF13174 TPR_6: Tetratricopept 71.6 5.8 0.00013 23.9 3.1 24 187-210 6-29 (33)
358 COG3947 Response regulator con 71.5 1.1E+02 0.0024 30.2 17.6 60 445-505 281-340 (361)
359 TIGR02508 type_III_yscG type I 71.0 25 0.00054 28.2 6.8 78 634-719 21-98 (115)
360 KOG4077 Cytochrome c oxidase, 70.9 45 0.00098 28.1 8.6 58 673-731 68-125 (149)
361 PF04190 DUF410: Protein of un 70.6 1.1E+02 0.0024 30.0 19.8 19 664-682 151-169 (260)
362 PF07575 Nucleopor_Nup85: Nup8 70.2 1.9E+02 0.0041 32.4 17.1 26 294-320 149-174 (566)
363 PF09986 DUF2225: Uncharacteri 70.1 45 0.00098 31.6 10.0 91 628-718 87-194 (214)
364 PF07721 TPR_4: Tetratricopept 70.0 6.2 0.00013 22.6 2.7 21 263-283 5-25 (26)
365 KOG2471 TPR repeat-containing 69.8 1.6E+02 0.0034 31.4 14.9 109 627-737 249-382 (696)
366 KOG0128 RNA-binding protein SA 68.4 2.2E+02 0.0048 32.5 39.2 108 634-743 442-553 (881)
367 PF10579 Rapsyn_N: Rapsyn N-te 67.6 19 0.00042 27.4 5.4 47 701-747 18-66 (80)
368 KOG2908 26S proteasome regulat 66.5 1.3E+02 0.0029 30.3 12.3 53 630-682 87-143 (380)
369 KOG1464 COP9 signalosome, subu 65.7 1.3E+02 0.0029 29.1 21.4 50 421-470 40-92 (440)
370 KOG2062 26S proteasome regulat 65.1 2.4E+02 0.0053 31.8 33.4 58 391-453 196-253 (929)
371 TIGR03504 FimV_Cterm FimV C-te 64.6 15 0.00032 24.5 3.9 23 695-717 5-27 (44)
372 KOG4507 Uncharacterized conser 64.2 28 0.0006 37.5 7.7 94 124-217 224-319 (886)
373 TIGR03504 FimV_Cterm FimV C-te 62.6 17 0.00037 24.2 3.9 22 415-436 6-27 (44)
374 KOG2908 26S proteasome regulat 62.5 1.1E+02 0.0025 30.7 11.0 86 375-460 80-174 (380)
375 KOG1586 Protein required for f 61.9 1.5E+02 0.0033 28.3 21.2 21 559-579 165-185 (288)
376 PF07163 Pex26: Pex26 protein; 60.6 1.8E+02 0.0038 28.7 11.7 89 375-466 88-181 (309)
377 smart00028 TPR Tetratricopepti 60.3 15 0.00033 21.1 3.5 26 262-287 4-29 (34)
378 KOG2471 TPR repeat-containing 60.0 2.4E+02 0.0053 30.1 17.7 111 378-490 248-381 (696)
379 KOG1464 COP9 signalosome, subu 59.6 1.8E+02 0.0038 28.3 24.5 138 366-505 22-172 (440)
380 KOG0991 Replication factor C, 59.2 1.7E+02 0.0036 28.0 13.4 138 552-699 134-282 (333)
381 TIGR02508 type_III_yscG type I 57.5 1E+02 0.0022 24.9 8.5 13 559-571 50-62 (115)
382 PHA02875 ankyrin repeat protei 56.0 2.8E+02 0.006 29.5 15.3 17 378-394 73-89 (413)
383 KOG2168 Cullins [Cell cycle co 55.9 3.7E+02 0.0081 31.0 20.4 24 334-357 330-353 (835)
384 PF14853 Fis1_TPR_C: Fis1 C-te 55.8 68 0.0015 22.4 6.3 32 695-728 7-38 (53)
385 KOG0890 Protein kinase of the 55.7 6E+02 0.013 33.3 37.2 152 264-432 1388-1542(2382)
386 PF04190 DUF410: Protein of un 54.8 2.2E+02 0.0048 28.0 20.9 159 382-577 2-170 (260)
387 PRK11619 lytic murein transgly 54.5 3.8E+02 0.0082 30.6 38.8 118 526-646 254-374 (644)
388 PF12862 Apc5: Anaphase-promot 53.3 80 0.0017 25.2 7.3 56 381-436 9-69 (94)
389 PRK10941 hypothetical protein; 53.2 1.8E+02 0.004 28.7 11.1 78 657-735 184-262 (269)
390 COG2976 Uncharacterized protei 52.5 2E+02 0.0043 26.7 18.6 127 294-438 54-189 (207)
391 KOG2659 LisH motif-containing 51.9 1.7E+02 0.0037 27.8 10.0 100 614-716 22-130 (228)
392 KOG0376 Serine-threonine phosp 51.7 28 0.00061 36.6 5.3 107 266-382 11-117 (476)
393 PF14561 TPR_20: Tetratricopep 51.1 1.2E+02 0.0027 24.0 8.1 54 256-309 19-73 (90)
394 KOG4642 Chaperone-dependent E3 51.0 2.1E+02 0.0045 27.5 10.2 123 269-396 20-143 (284)
395 KOG0687 26S proteasome regulat 50.8 2.8E+02 0.006 28.0 14.2 96 619-716 105-208 (393)
396 PF09670 Cas_Cas02710: CRISPR- 49.8 2.8E+02 0.006 29.2 12.5 51 306-357 143-197 (379)
397 PF11846 DUF3366: Domain of un 49.3 69 0.0015 29.8 7.4 30 652-681 142-171 (193)
398 PF11663 Toxin_YhaV: Toxin wit 48.9 16 0.00035 31.1 2.6 31 700-732 106-136 (140)
399 PF13929 mRNA_stabil: mRNA sta 47.7 3E+02 0.0064 27.4 19.1 116 385-502 143-262 (292)
400 PF08424 NRDE-2: NRDE-2, neces 47.6 3.3E+02 0.0071 27.9 19.0 122 600-724 48-190 (321)
401 COG5159 RPN6 26S proteasome re 47.6 2.9E+02 0.0063 27.2 21.8 194 418-611 13-234 (421)
402 PRK10941 hypothetical protein; 47.3 2.6E+02 0.0056 27.7 11.1 56 590-646 188-243 (269)
403 PF11663 Toxin_YhaV: Toxin wit 46.8 20 0.00043 30.6 2.8 31 271-303 107-137 (140)
404 KOG3807 Predicted membrane pro 46.6 3.2E+02 0.0069 27.5 13.6 56 589-646 281-339 (556)
405 PF13929 mRNA_stabil: mRNA sta 46.4 3.1E+02 0.0067 27.3 18.0 118 597-714 142-263 (292)
406 PF14689 SPOB_a: Sensor_kinase 45.6 57 0.0012 23.7 4.8 21 589-609 29-49 (62)
407 PF10366 Vps39_1: Vacuolar sor 45.2 1.8E+02 0.0038 24.1 8.6 27 261-287 41-67 (108)
408 PF09670 Cas_Cas02710: CRISPR- 44.9 3.5E+02 0.0076 28.4 12.4 55 557-612 140-198 (379)
409 PF14689 SPOB_a: Sensor_kinase 44.8 51 0.0011 23.9 4.4 23 694-716 28-50 (62)
410 PF08311 Mad3_BUB1_I: Mad3/BUB 44.5 1.5E+02 0.0033 25.3 8.0 77 634-716 49-126 (126)
411 PF11846 DUF3366: Domain of un 44.2 86 0.0019 29.1 7.2 50 666-717 120-172 (193)
412 KOG0686 COP9 signalosome, subu 44.1 3.4E+02 0.0075 28.3 11.3 62 584-646 151-215 (466)
413 KOG0686 COP9 signalosome, subu 43.8 4E+02 0.0087 27.8 15.4 170 261-437 152-333 (466)
414 PF00244 14-3-3: 14-3-3 protei 43.4 3.1E+02 0.0068 26.5 12.0 59 264-322 6-65 (236)
415 COG2178 Predicted RNA-binding 42.3 2.3E+02 0.0049 26.2 8.8 25 621-645 32-56 (204)
416 COG5187 RPN7 26S proteasome re 41.7 3.6E+02 0.0078 26.7 13.0 166 465-632 60-241 (412)
417 KOG4077 Cytochrome c oxidase, 41.7 1.8E+02 0.004 24.7 7.5 46 601-646 67-112 (149)
418 PF14853 Fis1_TPR_C: Fis1 C-te 41.3 98 0.0021 21.7 5.2 32 660-693 7-38 (53)
419 PF12862 Apc5: Anaphase-promot 40.9 1.8E+02 0.004 23.1 7.6 16 629-644 52-67 (94)
420 PF09986 DUF2225: Uncharacteri 40.4 3.1E+02 0.0066 26.1 10.2 92 593-684 87-195 (214)
421 PF09477 Type_III_YscG: Bacter 40.4 2.1E+02 0.0045 23.6 9.2 79 344-438 21-99 (116)
422 PRK13800 putative oxidoreducta 40.4 7.3E+02 0.016 29.8 29.6 111 616-737 754-865 (897)
423 smart00386 HAT HAT (Half-A-TPR 39.7 67 0.0015 18.8 4.0 29 273-302 1-29 (33)
424 KOG2300 Uncharacterized conser 39.3 5.2E+02 0.011 27.8 39.7 413 301-724 14-521 (629)
425 KOG0687 26S proteasome regulat 38.7 4.3E+02 0.0094 26.7 16.3 96 409-506 105-209 (393)
426 smart00777 Mad3_BUB1_I Mad3/BU 38.1 1.7E+02 0.0038 24.9 7.2 42 672-713 81-123 (125)
427 KOG0376 Serine-threonine phosp 37.6 63 0.0014 34.1 5.4 99 559-664 15-115 (476)
428 PF13934 ELYS: Nuclear pore co 37.4 3.8E+02 0.0082 25.7 14.3 142 599-751 26-167 (226)
429 PF10475 DUF2450: Protein of u 37.0 4.5E+02 0.0097 26.4 12.6 54 412-471 102-155 (291)
430 PF10366 Vps39_1: Vacuolar sor 36.8 1.2E+02 0.0026 25.0 6.0 26 657-682 42-67 (108)
431 KOG0991 Replication factor C, 36.8 3.9E+02 0.0084 25.7 15.5 151 588-750 135-299 (333)
432 PHA02875 ankyrin repeat protei 35.4 5.6E+02 0.012 27.1 15.9 69 246-318 17-89 (413)
433 cd00280 TRFH Telomeric Repeat 34.2 2.4E+02 0.0052 25.9 7.6 21 302-322 119-139 (200)
434 PF11817 Foie-gras_1: Foie gra 34.0 1.6E+02 0.0034 28.8 7.4 18 627-644 187-204 (247)
435 PF11848 DUF3368: Domain of un 33.9 1.5E+02 0.0033 20.1 5.2 30 701-730 14-43 (48)
436 COG4941 Predicted RNA polymera 33.9 5.3E+02 0.011 26.3 11.6 116 564-682 272-393 (415)
437 KOG1308 Hsp70-interacting prot 33.3 29 0.00063 34.8 2.1 117 595-717 126-243 (377)
438 PF14561 TPR_20: Tetratricopep 33.1 2.5E+02 0.0054 22.3 9.7 54 580-633 19-73 (90)
439 PF11817 Foie-gras_1: Foie gra 33.1 2.1E+02 0.0046 27.9 8.2 60 657-716 181-245 (247)
440 PRK10564 maltose regulon perip 32.3 86 0.0019 31.2 5.1 29 412-440 261-289 (303)
441 KOG0292 Vesicle coat complex C 31.9 3.8E+02 0.0082 31.1 10.2 21 589-609 912-932 (1202)
442 PRK08691 DNA polymerase III su 31.1 6.5E+02 0.014 28.9 12.2 84 599-686 180-277 (709)
443 PF09454 Vps23_core: Vps23 cor 30.9 78 0.0017 23.3 3.5 51 256-307 5-55 (65)
444 PF15297 CKAP2_C: Cytoskeleton 30.8 5.3E+02 0.012 26.4 10.3 63 671-735 120-186 (353)
445 KOG0403 Neoplastic transformat 30.3 6.9E+02 0.015 26.5 27.5 537 150-739 52-631 (645)
446 KOG4521 Nuclear pore complex, 30.3 1.1E+03 0.023 28.8 15.0 126 332-465 986-1124(1480)
447 cd00280 TRFH Telomeric Repeat 30.1 3.7E+02 0.0081 24.7 8.1 48 634-682 85-139 (200)
448 PF11848 DUF3368: Domain of un 30.1 1.8E+02 0.0039 19.8 5.2 33 664-696 12-44 (48)
449 PRK10564 maltose regulon perip 29.9 99 0.0022 30.7 5.1 42 651-692 253-295 (303)
450 PRK13342 recombination factor 29.2 7.2E+02 0.016 26.4 19.5 23 527-549 244-266 (413)
451 KOG2659 LisH motif-containing 28.9 5.2E+02 0.011 24.7 9.5 100 580-682 23-131 (228)
452 KOG2297 Predicted translation 28.9 6.1E+02 0.013 25.5 20.7 21 548-568 321-341 (412)
453 COG5191 Uncharacterized conser 28.8 1.5E+02 0.0033 29.4 6.0 79 255-335 103-182 (435)
454 KOG0292 Vesicle coat complex C 28.8 3.6E+02 0.0079 31.2 9.5 159 298-507 624-782 (1202)
455 PF00244 14-3-3: 14-3-3 protei 28.6 5.4E+02 0.012 24.8 12.7 39 555-593 8-46 (236)
456 KOG3807 Predicted membrane pro 27.5 6.6E+02 0.014 25.4 13.2 107 595-717 228-339 (556)
457 PF07720 TPR_3: Tetratricopept 27.3 1.5E+02 0.0033 18.7 3.9 22 692-713 4-25 (36)
458 KOG3364 Membrane protein invol 27.1 4.2E+02 0.0091 23.0 10.0 65 582-646 31-99 (149)
459 KOG0551 Hsp90 co-chaperone CNS 26.8 2.7E+02 0.0059 28.2 7.4 95 262-357 84-181 (390)
460 cd08819 CARD_MDA5_2 Caspase ac 26.6 3.2E+02 0.007 21.5 7.1 36 272-312 49-84 (88)
461 COG2178 Predicted RNA-binding 26.4 5.3E+02 0.011 24.0 10.0 16 421-436 134-149 (204)
462 COG0735 Fur Fe2+/Zn2+ uptake r 25.7 3.1E+02 0.0067 24.1 7.1 46 298-343 24-69 (145)
463 COG5108 RPO41 Mitochondrial DN 25.7 4.5E+02 0.0097 29.4 9.2 77 375-455 33-115 (1117)
464 PF11768 DUF3312: Protein of u 25.5 9.1E+02 0.02 26.6 11.5 24 263-286 412-435 (545)
465 PRK07003 DNA polymerase III su 25.4 8.8E+02 0.019 28.3 11.9 85 599-686 180-277 (830)
466 PRK14958 DNA polymerase III su 25.3 9.4E+02 0.02 26.5 12.3 85 600-688 181-279 (509)
467 PF09454 Vps23_core: Vps23 cor 25.2 1.3E+02 0.0028 22.1 3.8 32 328-359 7-38 (65)
468 PF02184 HAT: HAT (Half-A-TPR) 25.1 1.6E+02 0.0034 18.2 3.4 22 670-693 3-24 (32)
469 PF10255 Paf67: RNA polymerase 25.0 4E+02 0.0086 28.2 8.7 57 587-643 126-189 (404)
470 KOG2422 Uncharacterized conser 24.9 9.7E+02 0.021 26.5 19.4 159 272-436 251-447 (665)
471 PF09477 Type_III_YscG: Bacter 24.9 4E+02 0.0086 22.0 9.5 79 126-209 19-97 (116)
472 KOG2034 Vacuolar sorting prote 24.6 1.2E+03 0.026 27.4 32.3 78 266-357 365-444 (911)
473 KOG0551 Hsp90 co-chaperone CNS 24.5 6E+02 0.013 25.9 9.2 98 618-717 81-181 (390)
474 PRK14956 DNA polymerase III su 24.5 8.3E+02 0.018 26.6 11.1 45 600-646 183-228 (484)
475 PRK09857 putative transposase; 24.4 5.3E+02 0.011 25.9 9.3 64 660-724 212-275 (292)
476 PRK14951 DNA polymerase III su 24.2 7.8E+02 0.017 27.9 11.4 84 599-686 185-282 (618)
477 cd08819 CARD_MDA5_2 Caspase ac 24.1 3.6E+02 0.0079 21.3 7.5 14 457-470 50-63 (88)
478 KOG1114 Tripeptidyl peptidase 24.0 1.3E+03 0.027 27.5 15.5 79 670-749 1212-1291(1304)
479 PRK09857 putative transposase; 23.7 7.6E+02 0.016 24.8 10.4 64 553-617 211-274 (292)
480 KOG3364 Membrane protein invol 23.4 5E+02 0.011 22.6 10.4 72 615-689 29-104 (149)
481 KOG2034 Vacuolar sorting prote 23.3 1.2E+03 0.027 27.2 29.7 49 378-435 366-416 (911)
482 KOG1308 Hsp70-interacting prot 23.2 66 0.0014 32.4 2.6 86 271-359 126-212 (377)
483 PRK09111 DNA polymerase III su 23.1 8E+02 0.017 27.7 11.3 86 599-688 193-292 (598)
484 COG2256 MGS1 ATPase related to 23.1 9E+02 0.02 25.5 15.8 95 341-458 202-299 (436)
485 KOG1839 Uncharacterized protei 23.0 9E+02 0.02 29.7 11.8 25 477-501 972-996 (1236)
486 PRK06645 DNA polymerase III su 23.0 8.9E+02 0.019 26.6 11.3 86 599-687 189-290 (507)
487 KOG1839 Uncharacterized protei 22.6 9.3E+02 0.02 29.6 11.8 100 512-611 972-1085(1236)
488 KOG2063 Vacuolar assembly/sort 22.5 1.3E+03 0.029 27.3 21.4 116 261-382 506-638 (877)
489 PRK13342 recombination factor 22.0 9.7E+02 0.021 25.5 19.9 42 482-523 231-275 (413)
490 COG0735 Fur Fe2+/Zn2+ uptake r 21.9 4.5E+02 0.0098 23.1 7.4 29 449-477 26-54 (145)
491 COG5108 RPO41 Mitochondrial DN 21.6 4.4E+02 0.0095 29.4 8.3 76 623-701 33-115 (1117)
492 PF13762 MNE1: Mitochondrial s 21.6 5.6E+02 0.012 22.5 10.4 47 655-701 80-127 (145)
493 PRK11639 zinc uptake transcrip 21.5 5.2E+02 0.011 23.4 7.9 49 297-345 28-76 (169)
494 PLN03025 replication factor C 21.4 8.7E+02 0.019 24.7 11.1 91 635-728 161-263 (319)
495 KOG0545 Aryl-hydrocarbon recep 21.3 7.6E+02 0.017 24.0 11.4 110 187-323 184-293 (329)
496 PRK14963 DNA polymerase III su 21.1 9.8E+02 0.021 26.3 11.3 84 599-686 177-273 (504)
497 KOG4567 GTPase-activating prot 21.1 5.1E+02 0.011 26.0 7.9 73 674-751 263-345 (370)
498 COG4976 Predicted methyltransf 21.1 2E+02 0.0044 27.3 5.1 56 268-324 4-59 (287)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-79 Score=711.84 Aligned_cols=629 Identities=19% Similarity=0.261 Sum_probs=584.8
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 048807 75 PQLFFQITRRFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLL 154 (757)
Q Consensus 75 ~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (757)
.+.++..+.+.+....|+.+|+.+...... ++ ..++..++..+. ..+..+.+.+++..+.+.+..++..+++.|
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~-~~----~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQELRVP-VD----EDAYVALFRLCE-WKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHh-hCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 445556677788999999999988774322 33 234556666544 356678999999999999988999999999
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhh
Q 048807 155 IRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHV 234 (757)
Q Consensus 155 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~ 234 (757)
+.+|+++|+++.|+.+|++|.+ +|+++||.+|.+|++.|++++|+++|++|... ++.||.+|+..++.++.+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~~~~~~--- 200 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLRTCGGI--- 200 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHhCCc---
Confidence 9999999999999999999974 78999999999999999999999999999874 6899999999999998755
Q ss_pred ccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 048807 235 KNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMN 314 (757)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 314 (757)
.....+.+++..+.+.|+.||..++++||.+|+++|++++|.++|++|.+ +|.++||++|.+|++.|++++|.
T Consensus 201 ---~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 201 ---PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred ---cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHH
Confidence 22356788999999999999999999999999999999999999999975 68999999999999999999999
Q ss_pred HHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 048807 315 QLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIE 394 (757)
Q Consensus 315 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 394 (757)
++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.| +.||..+|+.||.+|++.|++++|.++|+
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 048807 395 QMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL 474 (757)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 474 (757)
+|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+
T Consensus 348 ~m~-------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 348 RME-------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred hCC-------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 994 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048807 475 CANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHL 554 (757)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 554 (757)
.++..+|+.||.+|+++|++++|.++|++|.+ +|..+|+++|.+|++.|+.++|..+|++|.. ++.||..||+.+
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 99999999999999999999999999999975 5889999999999999999999999999986 589999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 555 ISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHV 634 (757)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 634 (757)
+.+|++.|.++.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+++ .||..+|+++|.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 48999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK-VKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMD 713 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 713 (757)
++|.++|++|.+ .|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|.++++
T Consensus 571 ~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 571 SMAVELFNRMVE-SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHH-cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998 7999999999999999999999999999999999 68999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 714 RMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 714 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
+| ++.||..+|.+|+.+|...|+.+.++...+++
T Consensus 650 ~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 650 KM---PITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99 48999999999999999999988877766553
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.2e-76 Score=680.97 Aligned_cols=602 Identities=16% Similarity=0.255 Sum_probs=572.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc--CCCcchHHHHHHHH
Q 048807 114 AYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNN--LRNTHVRNVLIDVL 191 (757)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 191 (757)
.++.++..++ ..|.+++|+.+|+.|...|++++..++..++++|.+.+.++.|..++..+... .+++.++|+|+.+|
T Consensus 53 ~~n~~i~~l~-~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 53 DSNSQLRALC-SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 3444454343 46788999999999999999999999999999999999999999999988753 45678899999999
Q ss_pred HhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 192 LRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCR 271 (757)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~ 271 (757)
+++|++++|+++|++|.+ ||.++|+.++.++++. +..++|+.+|++|...|+.||.++|+.++.+|++
T Consensus 132 ~~~g~~~~A~~~f~~m~~------~d~~~~n~li~~~~~~------g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPE------RDLFSWNVLVGGYAKA------GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HhCCChHHHHHHHhcCCC------CCeeEHHHHHHHHHhC------CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 999999999999999964 6888999999999876 3348999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEV 351 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 351 (757)
.++++.+.+++..+.+.|..||+.++|++|.+|++.|++++|.++|++|.+ ||.++|+.+|.+|++.|++++|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 6899999999999999999999999
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELF 431 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 431 (757)
|++|.+.+ +.||..+|+.++.++++.|+.+.|.+++..|. ..|..||..+|+.|+.+|++.|++++|.++|
T Consensus 276 f~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~---~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 276 FFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVV---KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred HHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHH---HhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999988 89999999999999999999999999999997 8899999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048807 432 HLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSA 511 (757)
Q Consensus 432 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 511 (757)
++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.+
T Consensus 347 ~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 99964 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 512 DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLIS 591 (757)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 591 (757)
+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+ ++.||..||+.++.
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 999999999999999999999999999974 5889999999999999999999999999986 58999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVE 671 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 671 (757)
+|++.|+++.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+ .||..+|+++|.+|++.|+.+
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999887 389999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 672 LALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI-EHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 672 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
+|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|.+.|++++|.+++++|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999998 6799999999999999999999999999999999
Q ss_pred hhccCC
Q 048807 751 AVSAAP 756 (757)
Q Consensus 751 ~~~~~~ 756 (757)
|..|++
T Consensus 652 ~~~pd~ 657 (857)
T PLN03077 652 PITPDP 657 (857)
T ss_pred CCCCCH
Confidence 998875
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-69 Score=613.62 Aligned_cols=527 Identities=19% Similarity=0.348 Sum_probs=443.7
Q ss_pred CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCC
Q 048807 178 LRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFP 257 (757)
Q Consensus 178 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (757)
.++...+..++..+++.|++++|+++|++|..++. +.|+..++..++..+.+. +..++|..++..|.. |
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-v~~~~v~~~~li~~~~~~------g~~~eAl~lf~~M~~----p 435 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-LDMDKIYHAKFFKACKKQ------RAVKEAFRFAKLIRN----P 435 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHC------CCHHHHHHHHHHcCC----C
Confidence 34556677888888888888888888888887642 356666666666666544 234677777777653 7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
|..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
+|++.|++++|.++|+.|.+.+ +.||..+|+.||.+|++.|++++|.++|++|... ..++.||..+|+.+|.+
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~G------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKN------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHH
Confidence 8888888888888888888877 7888888888888888888888888888888521 25678888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048807 418 FCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEA 497 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 497 (757)
|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 498 IKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI 577 (757)
Q Consensus 498 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (757)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCH
Q 048807 578 GMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV----N-------------------GHV 634 (757)
Q Consensus 578 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~ 634 (757)
|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ . +..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 88888888888888888888888888888888888888888888888865432 1 124
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDR 714 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 714 (757)
++|..+|++|.+ .|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++
T Consensus 829 ~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 829 SWALMVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 678889999988 7899999999999988888888888888888888777888888999999987432 3689999999
Q ss_pred HHHcCCCCCHH
Q 048807 715 MIEHACHPDYI 725 (757)
Q Consensus 715 ~~~~g~~p~~~ 725 (757)
|.+.|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99988888764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-68 Score=606.56 Aligned_cols=522 Identities=18% Similarity=0.298 Sum_probs=490.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccH
Q 048807 145 PLSINSATLLIRFFGKVSMYDYSLLVYNELDNN---LRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTG 221 (757)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~ 221 (757)
.++...+..+++.|.+.|++++|+++|+.|... .++..+++.++..|.+.|.+++|+.+|+.|.. ||..+|
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHH
Confidence 456777888889999999999999999999863 23556678899999999999999999999953 899999
Q ss_pred HHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 222 DIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALL 301 (757)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 301 (757)
+.++.++++. +..+.|..++++|.+.|+.||..+|+.||.+|+++|++++|.++|++|.+.|+.||..+|+.||
T Consensus 441 n~LL~a~~k~------g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 441 NMLMSVCASS------QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred HHHHHHHHhC------cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999876 3347899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCcccccCCHhHHHHHHHH
Q 048807 302 NALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIA--GKETAEISVEPDVIIFNTLIDG 379 (757)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~ 379 (757)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .+ +.||..+|+++|.+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g------i~PD~vTynaLI~a 588 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP------IDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC------CCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986 34 78999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 048807 380 LCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRI 459 (757)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (757)
|++.|++++|.++|++|. ..++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 589 y~k~G~ldeA~elf~~M~---e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIH---EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHCCCHHHHHHHHHHHH---HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 999999999999999997 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 460 NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKL 539 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (757)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------
Q 048807 540 KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----S------------------- 596 (757)
Q Consensus 540 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~------------------- 596 (757)
.+.|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|.+ +
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n 825 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999876432 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 597 GNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSL 676 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 676 (757)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|.. .+..|+..+|+++|+++++. .++|..+
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 22468999999999999999999999999999899999999999998887 67889999999999998543 4789999
Q ss_pred HHHHHhCCCCCCHH
Q 048807 677 MEEMKVKEVRPNTN 690 (757)
Q Consensus 677 ~~~m~~~g~~p~~~ 690 (757)
|++|...|+.|+..
T Consensus 903 ~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 903 LEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHcCCCCCcc
Confidence 99999999999875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-63 Score=565.11 Aligned_cols=511 Identities=19% Similarity=0.301 Sum_probs=456.8
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCH
Q 048807 180 NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNA 259 (757)
Q Consensus 180 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 259 (757)
+..+|+.+|..|.+.|++++|+++|+.|... .++.||..++..++.++.+. ...+.+.+++..|.+.|+.||.
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~-~~~~~~~~t~~~ll~a~~~~------~~~~~a~~l~~~m~~~g~~~~~ 158 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAG-CPFTLPASTYDALVEACIAL------KSIRCVKAVYWHVESSGFEPDQ 158 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHhCCCcch
Confidence 3456777777777777777777777777653 23567777777777777654 2235667777888888999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL 339 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 339 (757)
.+|+.|+++|+++|++++|.++|++|.+ ||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 9999999999999999999999999975 699999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 048807 340 CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (757)
++.|..+.+.+++..+.+.+ +.+|..+|++||++|+++|++++|.++|++|. .+|+.+||.+|.+|+
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~ 301 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTG------VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYA 301 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhC------CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHH
Confidence 99999999999999999988 89999999999999999999999999999994 579999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIK 499 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (757)
+.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC
Q 048807 500 WFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMED-IG 578 (757)
Q Consensus 500 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~ 578 (757)
+|++|.+ +|..+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999974 699999999999999999999999999999999999999999999999999999999999999986 68
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHH
Q 048807 579 MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIY 657 (757)
Q Consensus 579 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~ 657 (757)
+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ ..| +..+|
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---~~p~~~~~y 531 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG---MGPEKLNNY 531 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---CCCCCCcch
Confidence 9999999999999999999999999999876 4689999999999999999999999999999876 345 46789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH-------HHHHHc----CCHHHHHHHHHHHHHcCCCCCH
Q 048807 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPNT-NTYNAMF-------KGLRQK----NMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 658 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~-------~~~~~~----g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
..|+++|++.|++++|.+++++|.+.|+.+.+ .+|..+. .+-..+ .-++...++.++|.+.|..||.
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999986433 2332111 000001 1244566788888888999985
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-62 Score=554.60 Aligned_cols=472 Identities=20% Similarity=0.330 Sum_probs=451.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFD-APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGT 334 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 334 (757)
..+..+|+.+|..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4466789999999999999999999999998765 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
++.+|++.|++++|.++|++| ..||.++||.+|.+|++.|++++|.++|++|. ..|..|+..+|+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m----------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~---~~g~~p~~~t~~~l 230 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEM----------PERNLASWGTIIGGLVDAGNYREAFALFREMW---EDGSDAEPRTFVVM 230 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcC----------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH---HhCCCCChhhHHHH
Confidence 999999999999999999999 36899999999999999999999999999997 78999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
+.++++.|..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.+ +|..+||.+|.+|++.|+.
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999964 4999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++++|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+..++.|+.
T Consensus 387 ~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 P----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred C----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 7 468999999999999999999999999999999999999999999999999999999999999998768999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD-YISMEILTEW 733 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 733 (757)
.+|++++++|++.|++++|.+++++|. +.|+..+|++|+.+|..+|+++.|...++++.+ +.|+ ..+|..|++.
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNL 537 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHH
Confidence 999999999999999999999998764 689999999999999999999999999999974 5675 5799999999
Q ss_pred HHhcCCHHHHHHHHhhchhc
Q 048807 734 LSEAGQTEKLKKFVQGYAVS 753 (757)
Q Consensus 734 ~~~~g~~~~A~~~~~~~~~~ 753 (757)
|.+.|++++|.+++++|..+
T Consensus 538 y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999998643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-38 Score=373.18 Aligned_cols=593 Identities=16% Similarity=0.110 Sum_probs=486.8
Q ss_pred HHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC-CcchHHHHHHHHHhcCChhhH
Q 048807 122 AIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLR-NTHVRNVLIDVLLRCDHDRDA 200 (757)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 200 (757)
+....|.+++|...++.+.... |.+..+...+...+.+.|++++|...+..+....+ ++..++.++..|.+.|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3445667777777777766543 56677777888888888888888888887765433 456778888888888888888
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 048807 201 FNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWD 280 (757)
Q Consensus 201 ~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (757)
.++|+++... .|+.......+..+. ...+..+++...+..+.+.+ +.+......++..|.+.|++++|.+
T Consensus 383 ~~~~~~~~~~----~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 383 AEYLAKATEL----DPENAAARTQLGISK-----LSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred HHHHHHHHhc----CCCCHHHHHHHHHHH-----HhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHH
Confidence 8888888764 344332222222221 12234567778888777664 3344566678888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 048807 281 VLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE 360 (757)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 360 (757)
+++.+.+..+ .+..+|+.++..|...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.++++++..
T Consensus 453 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 529 (899)
T TIGR02917 453 AAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID- 529 (899)
T ss_pred HHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9999887654 377889999999999999999999999998764 4456677788888999999999999999998864
Q ss_pred CCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 048807 361 TAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVT 440 (757)
Q Consensus 361 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (757)
+.+..++..++..+.+.|+.++|..+++++. ...+.+...+..++..|.+.|++++|.++++.+.+.. +
T Consensus 530 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 530 ------PKNLRAILALAGLYLRTGNEEEAVAWLEKAA----ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred ------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 5678889999999999999999999999884 3345677888899999999999999999999998763 4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048807 441 PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLI 520 (757)
Q Consensus 441 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 520 (757)
.+..+|..++..+...|++++|...|+++.+... .+...+..++..|.+.|++++|..+|+++.+.. +.+..++..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4778899999999999999999999999988653 367788889999999999999999999998764 55688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 521 SGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFS 600 (757)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 600 (757)
..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+++.+.+ |+..++..++..+.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 99999999999999999998875 4467788889999999999999999999999874 45577888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 601 AARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEM 680 (757)
Q Consensus 601 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 680 (757)
+|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+ ..+++..+++.++..+.+.|+ ++|+.+++++
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 9999999999864 45788899999999999999999999999988 235677889999999999999 8899999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 681 KVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 681 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
.... +-+..++..++.++.+.|++++|.++++++++.+. .+..++..++..+.+.|+.++|.+.++++
T Consensus 830 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 830 LKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8752 34567788899999999999999999999998643 37899999999999999999999999886
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-36 Score=359.34 Aligned_cols=628 Identities=15% Similarity=0.094 Sum_probs=318.8
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 84 RFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSM 163 (757)
Q Consensus 84 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 163 (757)
..+++..|...|+.+....|. +.. .+.. +..+....+.+++|+.+++.+.... |.+..++..+...+...|+
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~--~~~----~~~~-la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 137 GLGQLELAQKSYEQALAIDPR--SLY----AKLG-LAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGN 208 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCC--Chh----hHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCC
Confidence 456777777777766655443 111 1111 2223344566666766666665543 5566666666666666777
Q ss_pred hhHHHHHHHHhhccCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCC----------------------------
Q 048807 164 YDYSLLVYNELDNNLR-NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQF---------------------------- 214 (757)
Q Consensus 164 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~---------------------------- 214 (757)
+++|...|+++....| ++.++..++..+.+.|++++|...++.+.+.++..
T Consensus 209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7777776666654322 34556666666666666666666666665542210
Q ss_pred --CCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 048807 215 --PVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL 292 (757)
Q Consensus 215 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 292 (757)
.|+..........+. ...+..+++...+.++.+.. +.+...+..++..+.+.|++++|.+.++.+.+.++.
T Consensus 289 ~~~~~~~~~~~~~~~~~-----~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 361 (899)
T TIGR02917 289 KSAPEYLPALLLAGASE-----YQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD- 361 (899)
T ss_pred HhCCCchhHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 111110000000000 11123345555555555442 344555666666666666666666666666655433
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...++.+...+.+.|++++|.++|+++.+.+ +.+...+..+...+...|++++|++.++.+.+.. +.....
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 433 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-------PELGRA 433 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-------Ccchhh
Confidence 55666666666667777777777776666543 2234445555556666666666666666665543 222333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
...++..+.+.|++++|.++++.+. ...+++..+|..+...+...|++++|.+.|+++.+.. +.+...+..++..
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 508 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLE----KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARI 508 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHH
Confidence 4444555555555555555555552 2234445555555555555666666666665555442 1234445555555
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 532 (757)
+...|++++|.+.++++.+.... +..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+.+.|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555544322 44455555555555555555555555554432 33344444455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 533 SLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE 612 (757)
Q Consensus 533 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (757)
..+++.+.+.. +.+...|..++.+|...|++++|...|+++.+.. +.+...+..++..|.+.|++++|..+++++.+.
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555554432 2244455555555555555555555555554443 334444445555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 613 GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 613 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 692 (757)
. +.+..++..++..+...|++++|.++++.+.+. .+++...+..++..+.+.|++++|.+.|+++... .|+..++
T Consensus 665 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 739 (899)
T TIGR02917 665 K-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNA 739 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHH
Confidence 2 223444444444455555555555555544441 1233334444444444455555555555444442 2333344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
..++.++.+.|++++|.+.++++++. .+.+...+..++..+...|+.++|.+.+++
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 44444444444444444444444432 122334444444444444444444444444
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.2e-26 Score=276.37 Aligned_cols=620 Identities=13% Similarity=0.069 Sum_probs=445.8
Q ss_pred ChHHHHHH---HhcCCChhHHHHHHHHhhhCCCCCCCCCchHHHHH---------HHHHHHHhcCCChHHHHHHHHHHhh
Q 048807 74 SPQLFFQI---TRRFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQ---------AVFELAIRERMSPESLFDLYKACKD 141 (757)
Q Consensus 74 ~~~~~~~~---~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (757)
+|..+... ....++.+.|...++.+....|..+........+. -....+....+.+++|+..|+.+..
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 45554333 33668999999999888887776322111000100 0111234557889999999999887
Q ss_pred CCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHhhccCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcc
Q 048807 142 QNIPLSINSATL-LIRFFGKVSMYDYSLLVYNELDNNLR-NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNEL 219 (757)
Q Consensus 142 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~ 219 (757)
.+ |++...... ........|+.++|+..++++....| ++..+..+..++.+.|+.++|+..|+++..... ...
T Consensus 141 ~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~----~~~ 215 (1157)
T PRK11447 141 GA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPA----GRD 215 (1157)
T ss_pred CC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC----chH
Confidence 54 555432222 22233346999999999999987545 456788999999999999999999999976321 111
Q ss_pred cHHHHH-HHHHhh--------------hhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 048807 220 TGDIVF-YALMRR--------------EHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHV 284 (757)
Q Consensus 220 ~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (757)
...... ..+... ....+......+...+.........|+.. ...+...+...|++++|+..|++
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 101010 100000 00011111123333343333322223322 23456778899999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-ccchH------------HHHHHHHHhcCChhHHHHH
Q 048807 285 LMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP-SVVTF------------GTIINRLCKLYRADEALEV 351 (757)
Q Consensus 285 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~li~~~~~~g~~~~A~~~ 351 (757)
+++..+. +..++..+...|.+.|++++|...|++.++..... +...| ......+.+.|++++|+..
T Consensus 295 aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 295 AVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9998755 78999999999999999999999999999864211 11112 1224467789999999999
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELF 431 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 431 (757)
|+++++.. +.+...+..+...|...|++++|++.|+++. ...+.+...+..+...|. .++.++|+..+
T Consensus 374 ~~~Al~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL----~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l 441 (1157)
T PRK11447 374 YQQARQVD-------NTDSYAVLGLGDVAMARKDYAAAERYYQQAL----RMDPGNTNAVRGLANLYR-QQSPEKALAFI 441 (1157)
T ss_pred HHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 99999875 5677888899999999999999999999984 333556777888888775 46789999988
Q ss_pred HHHHhCCCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 432 HLMKQEGVT--------PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDD 503 (757)
Q Consensus 432 ~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (757)
+.+...... .....+..+...+...|++++|++.|+++++..+. +...+..+...|.+.|++++|...+++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765432100 01234566778889999999999999999987544 677888899999999999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 504 MSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIV---------CYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 504 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---------~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
+.+.. +.+...+..+...+.+.++.++|...++.+......++.. .+..+...+...|+.++|..+++.
T Consensus 521 al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~- 598 (1157)
T PRK11447 521 LAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ- 598 (1157)
T ss_pred HHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence 98754 4456666666667788999999999998865443222221 233456778899999999999872
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
.+.+...+..+...+.+.|++++|+..|++.++.. +.+...+..++..|...|++++|++.++.+.+. -+.+.
T Consensus 599 ----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~ 671 (1157)
T PRK11447 599 ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSL 671 (1157)
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCCh
Confidence 25667778889999999999999999999999864 346888999999999999999999999988762 22345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEV--RP---NTNTYNAMFKGLRQKNMLDKAFKLMDRMIE-HACHP 722 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p 722 (757)
..+..+..++...|++++|.++++++....- +| +...+..+...+...|+.++|+..|++++. .|+.|
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 5677888999999999999999999986421 12 234566678889999999999999999974 24443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-26 Score=275.31 Aligned_cols=593 Identities=13% Similarity=0.075 Sum_probs=388.1
Q ss_pred CCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCc-chH----------------HHHH
Q 048807 126 RMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNT-HVR----------------NVLI 188 (757)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~----------------~~l~ 188 (757)
.+..+.|.+.+.++.... |.++.++..++..+.+.|+.++|.+.++++....|+. ..+ ..++
T Consensus 41 ~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 41 THREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 556677888888877654 7789999999999999999999999999987755543 221 3345
Q ss_pred HHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 189 DVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITR 268 (757)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~ 268 (757)
..+.+.|++++|++.|+++...+ |+.......+..... ......++|+..++++.+.. +.+...+..+...
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~----p~~~~la~~y~~~~~----~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA----PPELDLAVEYWRLVA----KLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC----CCChHHHHHHHHHHh----hCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 57889999999999999998753 333221111111111 12234578899999988874 6678888999999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCC--HH-----------------HHH-------------------------------
Q 048807 269 FCRKGKTDEAWDVLHVLMKFDAPLE--AA-----------------SCN------------------------------- 298 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~-----------------~~~------------------------------- 298 (757)
+.+.|+.++|++.++++.+...... .. .+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999998865421100 00 011
Q ss_pred ---HHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHH-
Q 048807 299 ---ALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFN- 374 (757)
Q Consensus 299 ---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~- 374 (757)
.....+...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..|+++++... -.++...|.
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p-----~~~~~~~~~~ 344 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDP-----HSSNRDKWES 344 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CccchhHHHH
Confidence 11233445566666666666666543 23455555666666666666666666666655430 001111111
Q ss_pred -----------HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 375 -----------TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV 443 (757)
Q Consensus 375 -----------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 443 (757)
.....+.+.|++++|+..|+++. ...+.+...+..+...+...|++++|++.|+++.+... .+.
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al----~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~ 419 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR----QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNT 419 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 12334555666666666666653 22334455555666666666666666666666665421 234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 048807 444 VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC--------ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVV 515 (757)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 515 (757)
..+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++.++.. +.+...
T Consensus 420 ~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~ 497 (1157)
T PRK11447 420 NAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWL 497 (1157)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 44445555443 34556666555443221000 011223445566667788888888888877664 445666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HH
Q 048807 516 YFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV---------TY 586 (757)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~ 586 (757)
+..+...|.+.|++++|...++++.+... .+...+..+...+...++.++|...++.+......++.. .+
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 77777778888888888888887776532 244444445555667778888888777664332222211 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 666 (757)
..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+. -+.+...+..++..|..
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3445667788888888888772 2446667788899999999999999999999882 34467789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCCHH
Q 048807 667 NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHAC--HP---DYISMEILTEWLSEAGQTE 741 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p---~~~~~~~l~~~~~~~g~~~ 741 (757)
.|++++|++.++...+.. +.+...+..+..++...|++++|.+++++++...- .| +...+..+...+...|+.+
T Consensus 650 ~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred CCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 999999999999887642 23456677788899999999999999999986421 12 2246667788899999999
Q ss_pred HHHHHHhhc
Q 048807 742 KLKKFVQGY 750 (757)
Q Consensus 742 ~A~~~~~~~ 750 (757)
+|.+.+++.
T Consensus 729 ~A~~~y~~A 737 (1157)
T PRK11447 729 QALETYKDA 737 (1157)
T ss_pred HHHHHHHHH
Confidence 999998874
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=3.7e-23 Score=234.97 Aligned_cols=574 Identities=13% Similarity=0.054 Sum_probs=347.4
Q ss_pred cCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHH
Q 048807 125 ERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVL 204 (757)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 204 (757)
..|++++|+..|+.+.+.. |.+..++..|++.|.+.|+.++|+...+++....|+...+..++..+ ++.++|..+|
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3588999999999998876 88899999999999999999999999999988666543333333323 8999999999
Q ss_pred HHHHhccCCCCCCcccHHHHHHHH------HhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCChhH
Q 048807 205 DEMLDRESQFPVNELTGDIVFYAL------MRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQL-ITRFCRKGKTDE 277 (757)
Q Consensus 205 ~~m~~~~~~~~p~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~ 277 (757)
+++...+ |+......++... .+. ...+++.+.++ .......|+..+.... ...|.+.|++++
T Consensus 132 e~l~~~~----P~n~~~~~~la~~~~~~~~l~y------~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 132 EELLAQQ----KACDAVPTLRCRSEVGQNALRL------AQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred HHHHHhC----CCChhHHHHHHHHhhccchhhh------hhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 9999864 5544443333333 111 11255555555 3333334456655555 999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 278 AWDVLHVLMKFDAPLEAASCNALLNALGR-EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMI 356 (757)
Q Consensus 278 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 356 (757)
|++.+.++.+.++. +......|..+|.+ .++ +++..++... +..+...+..++..|.+.|+.++|.++++++.
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 99999999999765 67778888888888 477 8888886642 23477888999999999999999999999875
Q ss_pred hCCCCCcccccCCHhHH------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC
Q 048807 357 AGKETAEISVEPDVIIF------------------------------NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP 406 (757)
Q Consensus 357 ~~~~~~~~~~~~~~~~~------------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (757)
..... .|+..+| -.++..+.+.+.++.++++.. . .|
T Consensus 275 ~~~~~-----~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~ 340 (987)
T PRK09782 275 PLFTT-----DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-T--------LP 340 (987)
T ss_pred ccccC-----CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-C--------CC
Confidence 43210 1111111 123566677777776665532 2 22
Q ss_pred CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C-CCCCHHHHH
Q 048807 407 NAVTYNCLINGF--CKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK-G-LCANAVTYT 482 (757)
Q Consensus 407 ~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~ 482 (757)
.... ..+..+ ...+...++.+.+..|.+.. +-+......+.-...+.|+.++|.++++..... + ...+.....
T Consensus 341 ~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 341 ANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred cchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 2221 112111 12244555555555555441 114444444444555666666666666666552 1 112333344
Q ss_pred HHHHHHHhcCC---HHHHHHH-------------------------HHHHHHcCCCC--CHhhHHHHHHHHHhcCChhHH
Q 048807 483 ILITAFCNVNN---FQEAIKW-------------------------FDDMSRAGCSA--DSVVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 483 ~li~~~~~~g~---~~~A~~~-------------------------~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A 532 (757)
-|+..|.+.+. ..++..+ +...... .++ +...|..+..++.. ++.++|
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 55555555544 2222222 1111111 122 45555555555554 566666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 533 SLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE 612 (757)
Q Consensus 533 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (757)
...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++.++.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666555544 244333333344445666777777666665544 344444555556666666777777777666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 613 GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 613 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 692 (757)
. +.+...+..+.......|++++|...+++..+ ..|+...|..+..++.+.|+.++|+..+++..... +.+...+
T Consensus 572 ~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~ 646 (987)
T PRK09782 572 G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQ 646 (987)
T ss_pred C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3 11222232333333445677777777666665 23455566666666667777777777776666642 2244455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHP-DYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
..+..++...|++++|+..++++++. .| +...+..+..++...|+.++|...+++
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666667777777776666653 34 335666666666666777776666665
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=7.2e-21 Score=216.40 Aligned_cols=603 Identities=12% Similarity=0.011 Sum_probs=421.0
Q ss_pred CChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 048807 86 PSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYD 165 (757)
Q Consensus 86 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 165 (757)
+++..|+..|+.+.+..|.. + .++ ..+..++...|.+++|+...++..+.. |.+...+..+... ++.+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n--~----~~~-~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~i----~~~~ 125 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN--I----PLT-LYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAAI----PVEV 125 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC--H----HHH-HHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHHh----ccCh
Confidence 89999999999999888762 1 122 234445666888999999999988764 5566666655333 8999
Q ss_pred HHHHHHHHhhccCCC-cchHHHHHHH--------HHhcCChhhHHHHHHHHHhccCCCCCCcccHHHH-HHHHHhhhhhc
Q 048807 166 YSLLVYNELDNNLRN-THVRNVLIDV--------LLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIV-FYALMRREHVK 235 (757)
Q Consensus 166 ~A~~~~~~~~~~~~~-~~~~~~l~~~--------~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~-~~~~~~~~~~~ 235 (757)
+|..+++++....|+ ..++..+... |.+. ++|.+.++ . +. ....|+....... ...+...
T Consensus 126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-l-r~-~~~~~~~~vL~L~~~rlY~~l---- 195 (987)
T PRK09782 126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-D-AT-FAASPEGKTLRTDLLQRAIYL---- 195 (987)
T ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-H-hh-hCCCCCcHHHHHHHHHHHHHH----
Confidence 999999999875553 4455555554 6666 44444444 2 11 1112233322323 2222222
Q ss_pred cccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 048807 236 NSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCR-KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMN 314 (757)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 314 (757)
...++++.++.++.+.+ +.+......|..+|.. .++ ++|..++....+ .+...+..++..|.+.|+.++|.
T Consensus 196 --~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk----~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 196 --KQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF----TDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred --hCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc----cCHHHHHHHHHHHHHCCCHHHHH
Confidence 33467899999999987 4456667788889988 477 888888664332 48889999999999999999999
Q ss_pred HHHHHHHHCCCC-CccchHHHH------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 048807 315 QLFTEMKENDIE-PSVVTFGTI------------------------------INRLCKLYRADEALEVFEKMIAGKETAE 363 (757)
Q Consensus 315 ~~~~~m~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~ 363 (757)
++++++...... |...+|.-+ +..+.+.++++.+.++..
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 337 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA---------- 337 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc----------
Confidence 999988654222 333333222 344445555554443311
Q ss_pred ccccCCHhHHHHHHHHH--HHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-C
Q 048807 364 ISVEPDVIIFNTLIDGL--CKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE-G-V 439 (757)
Q Consensus 364 ~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~ 439 (757)
+.|.... ..++.. ...+...++.+.+..|.. ..+-+......+.-...+.|+.++|.++|+..... + -
T Consensus 338 --~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~----~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 338 --TLPANEM--LEERYAVSVATRNKAEALRLARLLYQ----QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred --CCCcchH--HHHHHhhccccCchhHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 2333332 222222 234677777777777741 22345666666666678899999999999998873 1 2
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHh
Q 048807 440 TPNVVTLNTLVDGMCRHGR---INSAVEF----------------------FQEVTRK-GL-CA--NAVTYTILITAFCN 490 (757)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~ 490 (757)
.++.....-++..|.+.+. ..++..+ +...... +. ++ +...|..+..++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 2344455577888877766 2333222 1111111 11 23 67788888888877
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 491 VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEV 570 (757)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (757)
++.++|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...
T Consensus 490 -~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 -TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred -CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 8899999988888776 356544444555567899999999999998665 45555677778889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 048807 571 LQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV 650 (757)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 650 (757)
+++..+.+ +.+...+..+.......|++++|...+++.++. .|+...+..+..++.+.|++++|+..+++..+ ..
T Consensus 565 l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~ 639 (987)
T PRK09782 565 LQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LE 639 (987)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 99999875 444444444445555679999999999999985 46788899999999999999999999999988 23
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHH
Q 048807 651 SPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEI 729 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ 729 (757)
+.+...++.+..++...|+.++|+..+++..+.. +-+...+..+..++...|++++|+..+++.++ +.|+. .+...
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~ 716 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPL 716 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhh
Confidence 3456688999999999999999999999999852 34677889999999999999999999999997 46766 55556
Q ss_pred HHHHHHhcCCHHHHHHHHhh
Q 048807 730 LTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~ 749 (757)
.........+++.|.+-+++
T Consensus 717 ~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 717 TPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 66667777777777776554
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-21 Score=206.78 Aligned_cols=565 Identities=14% Similarity=0.111 Sum_probs=423.3
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC--cchHHHHHHHHHhcCChhhHHHHHHH
Q 048807 129 PESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRN--THVRNVLIDVLLRCDHDRDAFNVLDE 206 (757)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 206 (757)
.+.|...|....+.. |++.-..-.-+......|++..|+.+|.++....|. +...-.+...+.++|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 466777777776543 555544433334445677999999999997643221 12233456778899999999999999
Q ss_pred HHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 207 MLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLM 286 (757)
Q Consensus 207 m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 286 (757)
.++. .|..+.....+..+--. ..+......++.++....... +.|+++.+.|.+.|.-.|+++.++.+...+.
T Consensus 225 alqL----dp~~v~alv~L~~~~l~--~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 225 ALQL----DPTCVSALVALGEVDLN--FNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHhc----ChhhHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9885 45554433333333221 112223355666666655443 5688899999999999999999999999998
Q ss_pred hCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 048807 287 KFDAP--LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEI 364 (757)
Q Consensus 287 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 364 (757)
+.... .-..+|-.+..+|-..|++++|..+|.+.....-..-+..+..|...|.+.|+++.+...|+++.+..
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----- 372 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL----- 372 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-----
Confidence 75422 12456888999999999999999999998886421114456678899999999999999999999874
Q ss_pred cccCCHhHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----h
Q 048807 365 SVEPDVIIFNTLIDGLCKVG----KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMK----Q 436 (757)
Q Consensus 365 ~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~ 436 (757)
+.+..+...|...|...+ ..+.|..++.+. ....+.|...|-.+...+....-+.. +..|..+. .
T Consensus 373 --p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~----~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 373 --PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV----LEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILES 445 (1018)
T ss_pred --cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH----HhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHH
Confidence 777888888988888876 557777777776 34457788899998888776554443 77766544 4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 437 EGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK---GLCANA------VTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 437 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
.+-.+.....|.+.......|++++|...|...... ...+|. .+-..+...+-..++.+.|.+.|..+++.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 455577889999999999999999999999998775 122233 22333666777788999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 048807 508 GCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIG-MTPNSVTY 586 (757)
Q Consensus 508 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 586 (757)
. +.-+..|..++......+...+|...+......+ ..++..+..+...+.+...+..|.+-|..+.+.- ..+|..+.
T Consensus 526 h-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 526 H-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred C-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 3 3334455556555556688899999999988764 4467778888889999999999999777766442 23577777
Q ss_pred HHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 587 NTLISFLSK------------SGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 587 ~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
-.|.+.|.+ .+..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.++.+. . ..+.
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~-~~~~ 680 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA-T-SDFE 680 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH-H-hhCC
Confidence 777776542 346789999999999864 347888899999999999999999999999983 2 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVK-EVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
.+|..+.++|..+|++..|+++|+..... +-.-+......|..++.+.|++.+|.+.+..+...
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 56999999999999999999999998763 33457788999999999999999999999988864
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2e-21 Score=205.65 Aligned_cols=600 Identities=15% Similarity=0.098 Sum_probs=436.3
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHH--HhcCCChHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcC
Q 048807 87 SSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELA--IRERMSPESLFDLYKACKD--QNIPLSINSATLLIRFFGKVS 162 (757)
Q Consensus 87 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g 162 (757)
+++.|.+.|+.+..++|. .+..+++.+ ..+++++..++.+|..+.. ...++++.+. ...++.++|
T Consensus 145 ~~~~A~a~F~~Vl~~sp~---------Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~ 213 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPD---------NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLG 213 (1018)
T ss_pred cHHHHHHHHHHHHhhCCc---------chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhcc
Confidence 367999999999999876 223445543 3567899999999999754 3445555443 457889999
Q ss_pred ChhHHHHHHHHhhccCCCcc-hHHHHHHHHHh---cCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhcccc
Q 048807 163 MYDYSLLVYNELDNNLRNTH-VRNVLIDVLLR---CDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSV 238 (757)
Q Consensus 163 ~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 238 (757)
+.+.|+..|.++....|..+ +.-.|.-+-.. ...+..|..++...-..+ |+.....+.+.... --..
T Consensus 214 ~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n----~~nP~~l~~LAn~f-----yfK~ 284 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN----NENPVALNHLANHF-----YFKK 284 (1018)
T ss_pred chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc----CCCcHHHHHHHHHH-----hhcc
Confidence 99999999999887655322 22222222222 234556777776665543 22222222232222 1123
Q ss_pred ChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 239 TDEELVGLVSKFAEHGVF--PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 239 ~~~~~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
+...+..+.+.++..-.. --...|-.+..+|-..|++++|...|.+..+.+....+..+-.|...|.+.|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 345666666655544321 123357789999999999999999999999887553366777889999999999999999
Q ss_pred HHHHHHCCCCCccchHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHH
Q 048807 317 FTEMKENDIEPSVVTFGTIINRLCKLY----RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGL 392 (757)
Q Consensus 317 ~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (757)
|+...+.. +.+..|...|...|...+ ..+.|..++.+..+.. +.|..+|-.+...|....-+.. +..
T Consensus 365 fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------~~d~~a~l~laql~e~~d~~~s-L~~ 435 (1018)
T KOG2002|consen 365 FEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------PVDSEAWLELAQLLEQTDPWAS-LDA 435 (1018)
T ss_pred HHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHhcChHHH-HHH
Confidence 99999874 445677777777777664 5688888999888763 7788899999988876555444 777
Q ss_pred HHHHHHh-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCC------CHHHHHHHHHHHHHcCChHHH
Q 048807 393 IEQMRLR-LQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE---GVTP------NVVTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 393 ~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p------~~~~~~~li~~~~~~g~~~~A 462 (757)
+..+... ...+..+.....|.+...+...|++.+|...|...... ...+ ++.+--.+...+-..++.+.|
T Consensus 436 ~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 436 YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH
Confidence 6655321 13344577888999999999999999999999988765 1222 333445567777888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048807 463 VEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA 542 (757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 542 (757)
.+.|..+++..+. -...|-.++.+....+...+|...+++....+ ..++..+..+...+.+...+..|.+-|....+.
T Consensus 516 ~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 516 EEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 9999999987321 23344444444445578889999999988764 557777888888999999999998877766554
Q ss_pred C-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 543 G-FRPDIVCYNHLISGFCK------------KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 543 g-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (757)
- ..+|..+.-.|.+.|.+ .+..++|+++|.++++.. |.|...-|.+.-.++..|++.+|..+|.+.
T Consensus 594 ~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 2 23578888778776643 356789999999999886 778899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 610 VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT 689 (757)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 689 (757)
.+... .+..+|..+.++|..+|++..|+++|+...+...-..+..+...|..++.+.|.+.+|.+...........-..
T Consensus 673 rEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 673 REATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 98643 25567889999999999999999999999886776678889999999999999999999999988875322233
Q ss_pred HHHHHHHHHH------------------HHcCCHHHHHHHHHHHHHcC
Q 048807 690 NTYNAMFKGL------------------RQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 690 ~~~~~l~~~~------------------~~~g~~~~A~~~~~~~~~~g 719 (757)
+.+|..+... ...+..++|.++|.++...+
T Consensus 752 v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 752 VKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455433221 12245778888999887654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=7.4e-24 Score=212.40 Aligned_cols=450 Identities=14% Similarity=0.131 Sum_probs=369.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
...|..-..+.|++++|++.....-..++. +....-.+-.++.+..+++...+--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 445667777899999999987776666543 44555556677777777777666555555543 3456789999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHH-HHHHHHHHHH
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT-YNCLINGFCK 420 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~ 420 (757)
.|++++|+..++.+++.. +..+..|..+..++...|+.+.|.+.|.+... ..|+... ...+...+-.
T Consensus 129 rg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPDLYCARSDLGNLLKA 196 (966)
T ss_pred hchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcchhhhhcchhHHHHh
Confidence 999999999999999875 55788999999999999999999999988741 2454433 3445556667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKW 500 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (757)
.|++++|...+.+.++... --...|..|...+...|+...|++.|+++++..+. -...|-.|...|...+.+++|...
T Consensus 197 ~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHH
Confidence 8999999999999888632 23567899999999999999999999999987432 245788899999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048807 501 FDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM 579 (757)
Q Consensus 501 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (757)
|.+..... +...+.+..+...|..+|..+-|+..|++.++. .|+ ...|+.|..++-..|+..+|...|.+.+...
T Consensus 275 Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~- 350 (966)
T KOG4626|consen 275 YLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC- 350 (966)
T ss_pred HHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-
Confidence 99887763 445677888888999999999999999999987 444 6789999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHH
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-VIY 657 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~ 657 (757)
+....+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|+..+++..+ +.|+. ..|
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~ 425 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADAL 425 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHH
Confidence 556778899999999999999999999999984 454 56789999999999999999999999877 66764 489
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 048807 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLS 735 (757)
Q Consensus 658 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 735 (757)
+.++..|-..|+++.|+..+.+.+.. .|. ....+.|...|..+|+..+|++-|+++++ ++||. ..|..++.++.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 99999999999999999999999874 454 45788999999999999999999999995 68887 77777877765
Q ss_pred hcCCH
Q 048807 736 EAGQT 740 (757)
Q Consensus 736 ~~g~~ 740 (757)
-..++
T Consensus 502 ~vcdw 506 (966)
T KOG4626|consen 502 IVCDW 506 (966)
T ss_pred HHhcc
Confidence 54433
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-22 Score=202.80 Aligned_cols=383 Identities=18% Similarity=0.163 Sum_probs=319.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch-HHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT-FGT 334 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ 334 (757)
+--..+|..+.+.+-..|++++|+..++.+++..+. .+..|..+..++...|+.+.|.+.|.+.++. .|+... .+.
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 334568888999999999999999999999998765 7899999999999999999999999999986 455444 344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
+...+-..|++++|...+.++++.. +.=.++|+.|...+-..|+...|++.|++.. .-.+.-...|-.|
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv----kldP~f~dAYiNL 258 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV----KLDPNFLDAYINL 258 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-------CceeeeehhcchHHhhcchHHHHHHHHHHhh----cCCCcchHHHhhH
Confidence 5556667899999999999998864 3446789999999999999999999999984 2223336789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
...|...+.+++|...+.+...... -..+++..+...|..+|.++-|+..|++.++..+. =...|+.|..++-..|++
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccch
Confidence 9999999999999999998887532 25678888999999999999999999999987433 356899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
.+|...|.+.+... +....+.+.|...|...|.+++|..+|....+- .|. ....+.|...|-+.|++++|+..|++
T Consensus 337 ~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 337 TEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 99999999998864 556778899999999999999999999988875 343 45789999999999999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 048807 574 MEDIGMTPN-SVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVS 651 (757)
Q Consensus 574 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 651 (757)
.+.. .|+ ...|+.+...|...|+.+.|.+.+.+.+.. .|. ...++.|...|-..|++.+|++-+++..+ ++
T Consensus 414 alrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk---lk 486 (966)
T KOG4626|consen 414 ALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK---LK 486 (966)
T ss_pred HHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc---cC
Confidence 9877 444 468999999999999999999999999885 454 56788899999999999999999999887 44
Q ss_pred CCH-HHHHHHHHHH
Q 048807 652 PNT-VIYNILIDSL 664 (757)
Q Consensus 652 p~~-~~~~~li~~~ 664 (757)
||. ..|..++.++
T Consensus 487 PDfpdA~cNllh~l 500 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCL 500 (966)
T ss_pred CCCchhhhHHHHHH
Confidence 553 3566665554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=9.1e-20 Score=204.43 Aligned_cols=432 Identities=15% Similarity=0.030 Sum_probs=302.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
.+......|.+.|++++|+..|+++++.. |+...|..+..+|.+.|++++|++.+.+.++.+ +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 45567888999999999999999999865 567889999999999999999999999999875 345678888999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
..|++++|+..|..+...+ ..+......++.-+.. ..+........ ...+++...+..+...+ .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~-------~~~~~~~~~~~~~~l~----~~a~~~~~~~l----~~~~~~~~~~~~~~~~~-~ 269 (615)
T TIGR00990 206 GLGKYADALLDLTASCIID-------GFRNEQSAQAVERLLK----KFAESKAKEIL----ETKPENLPSVTFVGNYL-Q 269 (615)
T ss_pred HcCCHHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHH----HHHHHHHHHHH----hcCCCCCCCHHHHHHHH-H
Confidence 9999999999988776543 1122222222221111 12222222221 11223333333333322 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH---HHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNV-VTLNTLVDG---MCRHGRINSAVEFFQEVTRKG--LCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 494 (757)
....+.+..-+....+. .++. ..+..+... ....+++++|.+.|+++.+.+ .+.....|+.+...+...|++
T Consensus 270 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 21122222112211111 1111 111111111 123478899999999998765 123456788888888999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
++|+..|++.++.. +.....|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++.
T Consensus 348 ~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 348 LEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988763 3446688888888999999999999999988764 335778888999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CC-
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV-SP- 652 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~p- 652 (757)
++.. +.+...+..+...+.+.|++++|+..|++.++.. +.+...++.+...+...|++++|++.|++..+...- .+
T Consensus 426 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 426 IDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred HHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence 9875 5567788888899999999999999999988753 335778888999999999999999999998762110 00
Q ss_pred --CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 653 --NTV-IYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 653 --~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
+.. .++..+..+...|++++|.+++++..... +.+...+..++.++.+.|++++|+++|+++.+.
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 111 12222233444689999999999988753 234557888999999999999999999999864
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.5e-19 Score=202.63 Aligned_cols=427 Identities=14% Similarity=0.079 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHH
Q 048807 295 ASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFN 374 (757)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (757)
..+......|.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++++++.+ +.+..+|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~ 198 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALN 198 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence 34566778899999999999999999975 5788889999999999999999999999999875 56788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMC 454 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (757)
.+..+|...|++++|+..|.... ... ..+......++..+.. ..+........+.. +++...+..+.. +.
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~---~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~ 268 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASC---IID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YL 268 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HH
Confidence 99999999999999999887664 111 1121222222222211 22333333333332 122222333322 22
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCh
Q 048807 455 RHGRINSAVEFFQEVTRKGLCANAVTYTILITA---FCNVNNFQEAIKWFDDMSRAG--CSADSVVYFTLISGLCQAGRM 529 (757)
Q Consensus 455 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~ 529 (757)
.......+..-+....+.... ....+..+... ....+++++|.+.|++..+.+ .+.....+..+...+...|++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HHccCCcchhhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 222222222212211111000 00111111111 123478999999999998764 233556788888899999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (757)
++|+..+++..+... .+...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|...|++.
T Consensus 348 ~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 348 LEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999988632 246688899999999999999999999999875 567889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 610 VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT 689 (757)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 689 (757)
++.. +.+...+..+...+.+.|++++|+..|++..+ ..+.+...|+.++..+...|++++|++.|++.... .|+.
T Consensus 426 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~ 500 (615)
T TIGR00990 426 IDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKET 500 (615)
T ss_pred HHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCcc
Confidence 9864 33577788899999999999999999999987 23445778999999999999999999999999874 2321
Q ss_pred -H-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 690 -N-------TYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 690 -~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
. .++..+..+...|++++|.++++++++. .|+. ..+..++..+...|++++|.+++++.
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1 1122222334479999999999999874 5655 67889999999999999999999874
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=8.8e-21 Score=202.05 Aligned_cols=303 Identities=15% Similarity=0.129 Sum_probs=222.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN---AVTYTILITAFCNV 491 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 491 (757)
...+...|++++|++.|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3445566777777777777776532 2455667777777777777777777777766432211 24566677777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 048807 492 NNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI----VCYNHLISGFCKKKMLDKA 567 (757)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A 567 (757)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|...++.+.+.+..+.. ..+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888887777642 445667777777788888888888888777765433221 2355677778888899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 048807 568 YEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSS 647 (757)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 647 (757)
...|+++.+.. +.+...+..++..|.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~- 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE- 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99998888764 4456677788888888999999999999988754222245678888889999999999999998877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCH
Q 048807 648 SNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ---KNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 648 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
..|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++|+.++++|+++++.|++
T Consensus 278 --~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 --EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2366666788888999999999999999988874 6888888887777664 56888999999999887777666
Q ss_pred H
Q 048807 725 I 725 (757)
Q Consensus 725 ~ 725 (757)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 4
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.9e-20 Score=198.11 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=113.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN----VVTLNT 448 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ 448 (757)
+..++..|.+.|++++|..+|+++. ...+.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLV----DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH----cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4444444555555555555555442 11223344445555555555555555555555444322111 112333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048807 449 LVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR 528 (757)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 528 (757)
++..+.+.|++++|...++++.+... .+...+..++..|.+.|++++|.++|+++.+.+......++..++.+|.+.|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 44444555555555555555554321 13334444555555555555555555555543211112334455555555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 048807 529 MNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK---SGNFSAARRV 605 (757)
Q Consensus 529 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 605 (757)
+++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+
T Consensus 265 ~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~ 340 (389)
T PRK11788 265 EAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLL 340 (389)
T ss_pred HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHH
Confidence 55555555555544 233333455555555555555555555555544 3455555555544443 3355555555
Q ss_pred HHHHHhCCCCCC
Q 048807 606 LKKMVKEGLVPT 617 (757)
Q Consensus 606 ~~~m~~~~~~p~ 617 (757)
+++|.+.++.|+
T Consensus 341 ~~~~~~~~~~~~ 352 (389)
T PRK11788 341 LRDLVGEQLKRK 352 (389)
T ss_pred HHHHHHHHHhCC
Confidence 555555444333
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2e-18 Score=192.74 Aligned_cols=332 Identities=12% Similarity=0.057 Sum_probs=263.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
.++..+.+.|++++|..+++..+...+. +...+..++.+....|++++|.+.|+++.+.. +.+...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3566777889999999999999887665 56666667777778999999999999999874 445677888888889999
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGN 423 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (757)
++++|+..++++++.. +.+...+..++..+...|++++|...++.+. ...+.+...+..+ ..+...|+
T Consensus 125 ~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~----~~~P~~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 125 QYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQA----QEVPPRGDMIATC-LSFLNKSR 192 (656)
T ss_pred CHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH----HhCCCCHHHHHHH-HHHHHcCC
Confidence 9999999999998864 5567788889999999999999999998774 2223344444444 34788899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHH
Q 048807 424 IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQE----AIK 499 (757)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~ 499 (757)
+++|.+.++.+.+....++...+..+...+.+.|++++|...++++.+.... +...+..+...|...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 9999999999887644445555666677888999999999999999887543 67788888999999999885 789
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048807 500 WFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM 579 (757)
Q Consensus 500 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (757)
.|++..+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..+|.+.|++++|...|+++.+.+
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 999888764 556778889999999999999999999998886432 46677788889999999999999999988774
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEG 613 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 613 (757)
+.+...+..+..++...|+.++|...|++..+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2233344445677889999999999999988753
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=6.1e-18 Score=193.06 Aligned_cols=421 Identities=15% Similarity=0.098 Sum_probs=247.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++.++.. +.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344444445555666677777777777766532 2245556677777777777777777777766653 33444555666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
..+...|++++|+..++++++.. +.+.. +..+...+...|+.++|+..++++. ...+.+...+..+..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al----~~~P~~~~~~~~la~ 158 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-------PDKAN-LLALAYVYKRAGRHWDELRAMTQAL----PRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHH
Confidence 66667777777777777776653 44455 6666666777777777777777663 233445555566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVV------TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (757)
.+...|..++|++.++.+.+ .|+.. ....++.... ......
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~------------------------------~~~~~~ 205 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSF------------------------------MPTRSE 205 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhc------------------------------ccccCh
Confidence 66666666667666655443 22200 0000000000 000111
Q ss_pred cCCH---HHHHHHHHHHHHc-CCCCCHh-hH----HHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 048807 491 VNNF---QEAIKWFDDMSRA-GCSADSV-VY----FTLISGLCQAGRMNDASLVVSKLKEAGFR-PDIVCYNHLISGFCK 560 (757)
Q Consensus 491 ~g~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~ 560 (757)
.+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|..
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~ 284 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLK 284 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHh
Confidence 1222 5566666666543 1112111 11 11123345567777777777777665422 221 12224556777
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTP---NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL-----------VPT---VVTYGA 623 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~ 623 (757)
.|++++|...|+++.+..... .......+..++...|++++|..+++++.+... .|+ ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 777777777777766542110 123445555566777777777777777765421 122 224455
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc
Q 048807 624 LIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPN-TNTYNAMFKGLRQK 702 (757)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 702 (757)
+...+...|++++|++.++++.. ..+.+...+..++..+...|++++|++.+++.... .|+ ...+...+..+...
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHh
Confidence 66777788888888888888776 33445667788888888888888888888888774 354 55666666777788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 703 NMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 703 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
|++++|..+++++++. .|+......+-
T Consensus 441 ~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 8888888888888863 56654444343
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=6.2e-18 Score=188.78 Aligned_cols=358 Identities=13% Similarity=0.044 Sum_probs=287.2
Q ss_pred HHcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhH
Q 048807 270 CRKGKTDEAWDVLHVLMKFD--APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADE 347 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 347 (757)
.++.+++.-.-+|....+.. -.-+......++..+.+.|++++|..+++..+... +-+...+..++..+...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 34555555444444433221 01123344556777889999999999999999874 3345566677778888999999
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKG 427 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 427 (757)
|++.++++++.. |.+...+..+...+.+.|++++|.+.++++. .-.+.+...+..++..+...|++++|
T Consensus 95 A~~~l~~~l~~~-------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al----~l~P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 95 VLQVVNKLLAVN-------VCQPEDVLLVASVLLKSKQYATVADLAEQAW----LAFSGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred HHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHCCChHHH
Confidence 999999999875 6678889999999999999999999999984 33456788899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 428 LELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|+..++++.+.
T Consensus 164 ~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988776433 33334333 347889999999999999988754445556666678899999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 508 GCSADSVVYFTLISGLCQAGRMND----ASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS 583 (757)
Q Consensus 508 ~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 583 (757)
. +.+...+..+...+...|++++ |...|++..+... .+...+..+...+.+.|++++|...+++..+.. +.+.
T Consensus 242 ~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~ 318 (656)
T PRK15174 242 G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP 318 (656)
T ss_pred C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 5 5677888899999999999986 8999999988743 367789999999999999999999999999875 5567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV-VTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..+..+...|.+.|++++|...++++...+ |+. ..+..+..++...|+.++|...|++..+
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788889999999999999999999999863 443 3444567788999999999999999877
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=6.2e-18 Score=193.03 Aligned_cols=403 Identities=9% Similarity=0.043 Sum_probs=248.1
Q ss_pred ccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 237 SVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 237 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
.+..++|+.++.++.... +.+...+..+...+.+.|++++|.+++++.++..+. +...+..++..+...|++++|...
T Consensus 28 ~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455678888888887632 556667999999999999999999999999988654 677888999999999999999999
Q ss_pred HHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 317 FTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 317 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
++++++.. +.+.. +..+...+...|+.++|+..++++++.. +.+...+..++..+...|..++|++.++..
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999874 44555 8888889999999999999999999975 567777788899999999999999999876
Q ss_pred HHhhcCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCChH
Q 048807 397 RLRLQKGCMPNA------VTYNCLINGFC-----KSGNI---EKGLELFHLMKQE-GVTPNVV-TLNTLVDGMCRHGRIN 460 (757)
Q Consensus 397 ~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~~li~~~~~~g~~~ 460 (757)
. . .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+..
T Consensus 177 ~----~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~------------ 238 (765)
T PRK10049 177 N----L--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR------------ 238 (765)
T ss_pred C----C--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH------------
Confidence 3 1 2321 01111111111 11112 4444444444432 1111111 0000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 461 SAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCS-ADSVVYFTLISGLCQAGRMNDASLVVSKL 539 (757)
Q Consensus 461 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (757)
.....+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++
T Consensus 239 -------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 239 -------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred -------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 0000011223344455555555554443311 111 1111234444555555555555554
Q ss_pred HHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHH
Q 048807 540 KEAGFRP---DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM-----------TPN---SVTYNTLISFLSKSGNFSAA 602 (757)
Q Consensus 540 ~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A 602 (757)
.+..... .......+..++...|++++|...++.+.+... .|+ ...+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 4332110 012233344444555555555555555544310 122 12345566667777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 603 RRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 603 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+++++++.... +.+...+..++..+...|++++|++.+++..+. .+.+...+..++..+.+.|++++|..+++++++
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777653 335666777777777777777777777777661 122345566666677777778888888777776
Q ss_pred CCCCCCHHHHH
Q 048807 683 KEVRPNTNTYN 693 (757)
Q Consensus 683 ~g~~p~~~~~~ 693 (757)
. .|+.....
T Consensus 456 ~--~Pd~~~~~ 464 (765)
T PRK10049 456 R--EPQDPGVQ 464 (765)
T ss_pred h--CCCCHHHH
Confidence 4 45544333
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=9.5e-16 Score=171.35 Aligned_cols=444 Identities=13% Similarity=0.096 Sum_probs=324.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
-+-...+.|+++.|++.|+++.+.++.-....+ .++..+...|+.++|+.++++..... +........+...+...|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 344567999999999999999998755222344 88889999999999999999998321 1122223333557888899
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI 424 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (757)
+++|+++|+++++.. +.+...+..++..|...++.++|++.++++. . ..|+...+..++..+...++.
T Consensus 118 yd~Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~----~-~dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 118 WDQALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELA----E-RDPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc----c-cCcchHHHHHHHHHHHhcchH
Confidence 999999999999986 5667778888999999999999999999984 2 245555565555555556777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH---H--hcC-
Q 048807 425 EKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTY------TILITAF---C--NVN- 492 (757)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~---~--~~g- 492 (757)
.+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-... +.+....+ ..++..- . ...
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 77999999999984 336778888999999999999998776653321 11111111 1111100 0 111
Q ss_pred --CHHHHHHHHHHHHHc-C-CCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 493 --NFQEAIKWFDDMSRA-G-CSADSV----VYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKML 564 (757)
Q Consensus 493 --~~~~A~~~~~~m~~~-~-~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 564 (757)
-.+.|+.-++.+... + .++... ...-.+-++...|++.+++..|+.+...+.+....+-..+.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 245566666666542 1 122222 22334557888999999999999999888665667888999999999999
Q ss_pred HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------CCCHH-HHHHHH
Q 048807 565 DKAYEVLQEMEDIG-----MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL-------------VPTVV-TYGALI 625 (757)
Q Consensus 565 ~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~li 625 (757)
++|..+|+.+.... .+++......|..+|...+++++|..+++++.+... .||-. .+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999987643 123444467888999999999999999999987311 12322 334556
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP-NTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 704 (757)
..+...|++.+|++.++++.. .-+-|......+.+.+...|...+|.+.++.+... .| +..+....+.++...|+
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhh
Confidence 778889999999999999977 44567888999999999999999999999777664 45 45566778888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048807 705 LDKAFKLMDRMIEHACHPDYISMEIL 730 (757)
Q Consensus 705 ~~~A~~~~~~~~~~g~~p~~~~~~~l 730 (757)
+++|..+.+...+. .|+......|
T Consensus 500 ~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 500 WHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHHHHHhh--CCCchhHHHH
Confidence 99999999998874 5665444443
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=2.9e-14 Score=145.11 Aligned_cols=607 Identities=11% Similarity=0.035 Sum_probs=423.8
Q ss_pred CChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 048807 86 PSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYD 165 (757)
Q Consensus 86 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 165 (757)
.|..+|.-++..+...+|. ++.-| +..+.++.. .|.+..|..+...-. ..+|.+..+|---++ .-..+
T Consensus 265 ~DikKaR~llKSvretnP~--hp~gW--IAsArLEEv---agKl~~Ar~~I~~GC-e~cprSeDvWLeaiR----Lhp~d 332 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK--HPPGW--IASARLEEV---AGKLSVARNLIMKGC-EECPRSEDVWLEAIR----LHPPD 332 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCchH--HHHHHHHHH---hhHHHHHHHHHHHHH-hhCCchHHHHHHHHh----cCChH
Confidence 3567888888888888875 33333 444444432 223334433322211 124666666643332 23445
Q ss_pred HHHHHHHHhhccCCC-cchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHH
Q 048807 166 YSLLVYNELDNNLRN-THVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELV 244 (757)
Q Consensus 166 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (757)
.|..+...+....|+ +..|---++. ......=..++++.++. -|+++. +..+.+. .-..+.|.
T Consensus 333 ~aK~vvA~Avr~~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~----iP~sv~---LWKaAVe------lE~~~dar 396 (913)
T KOG0495|consen 333 VAKTVVANAVRFLPTSVRLWLKAADL---ESDTKNKKRVLRKALEH----IPRSVR---LWKAAVE------LEEPEDAR 396 (913)
T ss_pred HHHHHHHHHHHhCCCChhhhhhHHhh---hhHHHHHHHHHHHHHHh----CCchHH---HHHHHHh------ccChHHHH
Confidence 555555555443333 3344222221 11223335566666663 455542 2222221 12234466
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----
Q 048807 245 GLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEM---- 320 (757)
Q Consensus 245 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 320 (757)
-++.+.++. ++.+...|. +|.+..-++.|..++..+.+. ++.+...|.+-...=-++|+.+...++..+-
T Consensus 397 ilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L 470 (913)
T KOG0495|consen 397 ILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSEL 470 (913)
T ss_pred HHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 667766665 344444444 566777888999999888875 4558888888887778888888888877654
Q ss_pred HHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 048807 321 KENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 321 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 400 (757)
...|+..+...|..=...|-..|..-.+..+....+..|.. -..--.+|+.-...|.+.+.++-|..+|...
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE----eed~~~tw~~da~~~~k~~~~~carAVya~a---- 542 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE----EEDRKSTWLDDAQSCEKRPAIECARAVYAHA---- 542 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc----cchhHhHHhhhHHHHHhcchHHHHHHHHHHH----
Confidence 34577777777877777888888888888888888776511 1223468888888899999999999988887
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 048807 401 QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVT 480 (757)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 480 (757)
..-.+.+...|...+..--..|..++-..+|+++... ++-....|......+-..|+...|..++.++.+.... +...
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 3445667778888887777788889888899988876 3335666777777888889999999999998887554 7778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
|-+-+.......+++.|..+|.+.... .++...|.--+....-.+..++|.+++++.++. ++.-...|..+...+-+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHH
Confidence 888888888888999999999887765 567777777777777788899999999888876 22234578888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKI 640 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 640 (757)
.++++.|.+.|..-.+. +|...-.|-.|...--+.|.+-.|..++++..-++ +-+...|...|.+-.+.|..+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 99999998888776655 35555677777777788889999999999888775 33778888889998999999999988
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048807 641 FKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHAC 720 (757)
Q Consensus 641 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 720 (757)
+.+..+ .++.+...|..-|....+.++-......+++ +.-|+.....+...+....++++|.+.|++.++ .
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~ 846 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--K 846 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--c
Confidence 888877 4555667788888887777775555544443 345777777788888888889999999998886 4
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 721 HPDY-ISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 721 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
.||. .+|.-+......+|.-++-.+.+++.
T Consensus 847 d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 847 DPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred CCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5665 78888888888888777666666654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=2.7e-15 Score=167.68 Aligned_cols=434 Identities=12% Similarity=0.051 Sum_probs=227.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCCCcc-hHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhh
Q 048807 153 LLIRFFGKVSMYDYSLLVYNELDNNLRNTH-VRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRR 231 (757)
Q Consensus 153 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~ 231 (757)
.-+-...+.|+++.|+..|+++....|+.. ....++..+...|+.++|+..+++... |+.
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~------p~n------------- 99 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS------SMN------------- 99 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc------CCC-------------
Confidence 333445567777777777777766555431 222667777777777777777776642 111
Q ss_pred hhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 048807 232 EHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFK 311 (757)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 311 (757)
........++..|...|++++|+++|+++.+..+. +...+..++..|...++.+
T Consensus 100 -------------------------~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 100 -------------------------ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGG 153 (822)
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHH
Confidence 11222333455677778888888888888887765 5666777777788888888
Q ss_pred HHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHH
Q 048807 312 RMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALG 391 (757)
Q Consensus 312 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 391 (757)
+|++.++++... .|+...+..++..+...++..+|++.++++++.. |.+...+..+...+.+.|-...|++
T Consensus 154 eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-------P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 154 VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-------PTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 888888888776 3454445444444444556656888888888764 5567777777888888888888877
Q ss_pred HHHHHHHhhcCCCCCCHHHH------HHHHHHH---H--HcC---CHHHHHHHHHHHHhC-CCCCC-HHHH----HHHHH
Q 048807 392 LIEQMRLRLQKGCMPNAVTY------NCLINGF---C--KSG---NIEKGLELFHLMKQE-GVTPN-VVTL----NTLVD 451 (757)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~------~~li~~~---~--~~g---~~~~A~~~~~~m~~~-g~~p~-~~~~----~~li~ 451 (757)
+..+-. .-..+...-+ ..+++.- . ..+ -.+.|+.-++.+... +..|. ...| .-.+-
T Consensus 225 l~~~~p----~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 225 LAKENP----NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHhCc----cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 766542 1111111111 0000000 0 001 123333334443331 11121 1111 11233
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHhhHHHHHHHHHhc
Q 048807 452 GMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAG-----CSADSVVYFTLISGLCQA 526 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~ 526 (757)
++...|+..++++.|+.+...+.+....+--.+.++|...++.++|+.+|+.+.... .+++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 444555555555555555555543333344555555555555555555555554421 111222234455555555
Q ss_pred CChhHHHHHHHHHHHCCC-------------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 527 GRMNDASLVVSKLKEAGF-------------RPDI-VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISF 592 (757)
Q Consensus 527 g~~~~A~~~~~~~~~~g~-------------~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 592 (757)
+++++|..+++.+.+... .||- ..+..++..+...|++.+|++.++++.... |-|......+.+.
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 555555555555554211 1111 112233444445555555555555554443 4444555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 593 LSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
+...|.+.+|++.++...... +-+..+....+.++...|++++|..+.+.+.+
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 555555555555554443321 12333444444445555555555555555444
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=1.9e-14 Score=152.46 Aligned_cols=637 Identities=14% Similarity=0.103 Sum_probs=412.6
Q ss_pred CChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 048807 86 PSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYD 165 (757)
Q Consensus 86 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 165 (757)
|+.+.|...+..+.++.|-.. ..|.. |+.++..+|+.++++...-.+... -|.+..-|..+.....+.|+++
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~------~ay~t-L~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNP------IAYYT-LGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccch------hhHHH-HHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHH
Confidence 899999999999999887521 12222 566778889999998765544443 4888899999999999999999
Q ss_pred HHHHHHHHhhccCCC-cchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhh-hhhccccChHHH
Q 048807 166 YSLLVYNELDNNLRN-THVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRR-EHVKNSVTDEEL 243 (757)
Q Consensus 166 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 243 (757)
.|.-+|.++....|. .-..-.-..+|-+.|....|..-|.++...++ |..+ ..+.....+. ..+-.....+.|
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p---~~d~--er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP---PVDI--ERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC---chhH--HHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999875443 33334457889999999999999999988643 3322 2222111110 001111223566
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-------------------------
Q 048807 244 VGLVSKFAEH-GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASC------------------------- 297 (757)
Q Consensus 244 ~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------- 297 (757)
.+.++..... +-..+...++.++..|.+...++.|......+..+...+|..-|
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 6666555542 22445667889999999999999999888777662222221111
Q ss_pred -HHHHHHHHHcCChhHHHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHH
Q 048807 298 -NALLNALGREGDFKRMNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFN 374 (757)
Q Consensus 298 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (757)
--+.-++.+....+....+.....+..+.| +...|..+..+|...|++.+|+.+|..+.... ...+...|-
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~------~~~~~~vw~ 453 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE------GYQNAFVWY 453 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc------cccchhhhH
Confidence 122333444555555555555566665333 45668889999999999999999999998765 455678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------CCCCCCHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ--------EGVTPNVVTL 446 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~ 446 (757)
.+..+|...|.+++|.+.++... .-.+.+...-.+|...+.+.|+.++|.+.+..+.. .+..|+....
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl----~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVL----ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH----hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 99999999999999999999984 34466777888899999999999999999998652 2344555556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-
Q 048807 447 NTLVDGMCRHGRINSAVEFFQEVTRKG----------------------LCANAVTYTILITAFCNVNNFQEAIKWFDD- 503 (757)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~- 503 (757)
....+.+.+.|+.++-..+-..|+... ..........++.+-.+.++.....+-...
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 666778888898888665555544321 011111222233333333332222111111
Q ss_pred -----HHHcCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 048807 504 -----MSRAGCSADS--VVYFTLISGLCQAGRMNDASLVVSKLKEAGF-RPDIV----CYNHLISGFCKKKMLDKAYEVL 571 (757)
Q Consensus 504 -----m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~----~~~~li~~~~~~g~~~~A~~~~ 571 (757)
-...|...+. ..+.-++..+++.+++++|+.+...+.+... ..+.. .-...+.+.+..+++..|...+
T Consensus 610 ~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 610 TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111211121 2345677788999999999999888876532 11222 2244556677899999999999
Q ss_pred HHHHhC-CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 048807 572 QEMEDI-GM---TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSS 647 (757)
Q Consensus 572 ~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 647 (757)
+.|... +. +--...|+...+...+.++-.--.+.+..+......-+......-.+-....+.+.-|+..+-++..
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~- 768 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR- 768 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH-
Confidence 998865 11 2223456656666666665544445554444332111122222233445677889999998877766
Q ss_pred CCCCCCHHHHH-HHHHHHHh----------cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 648 SNVSPNTVIYN-ILIDSLCK----------NNQVELALSLMEEMKVKEV-RPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 648 ~~~~p~~~~~~-~li~~~~~----------~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
..|+....+ +++-++.+ +-.+-++..++++..+... .-..+.+-.++.+|-..|-..-|..+|++.
T Consensus 769 --~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 --QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred --hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 335533333 33333322 1234556677766665321 124456777999999999999999999999
Q ss_pred HHcCCCC---------C----HHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 716 IEHACHP---------D----YISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 716 ~~~g~~p---------~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
++. .| + ...-.+|.-.|.+.|+.+.|+++++++
T Consensus 847 L~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 847 LEV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred hCC--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 963 22 1 123334666788999999999999875
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=2.5e-13 Score=138.43 Aligned_cols=553 Identities=11% Similarity=0.059 Sum_probs=430.9
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC-cchHHHHHHHHHhcCChhhHHHHHHHH
Q 048807 129 PESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRN-THVRNVLIDVLLRCDHDRDAFNVLDEM 207 (757)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 207 (757)
++.+..+...+.+. +|.++..|---+..= .+...-..++.++.+..|+ +..|-..+ .....++|+.++.+.
T Consensus 331 ~d~aK~vvA~Avr~-~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rA 402 (913)
T KOG0495|consen 331 PDVAKTVVANAVRF-LPTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERA 402 (913)
T ss_pred hHHHHHHHHHHHHh-CCCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHH
Confidence 34455555555444 366665553222211 1111123466665554443 44565443 456677799888888
Q ss_pred HhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-
Q 048807 208 LDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLM- 286 (757)
Q Consensus 208 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 286 (757)
.+ +.|.+.. +.-++.+. .+++.+...+.+..+. ++-+...|.+-...=-.+|..+....+.++.+
T Consensus 403 ve----ccp~s~d---LwlAlarL------etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~ 468 (913)
T KOG0495|consen 403 VE----CCPQSMD---LWLALARL------ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLS 468 (913)
T ss_pred HH----hccchHH---HHHHHHHH------HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66 5666644 33333332 3346777777777665 78899999888888889999999888887644
Q ss_pred ---hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 048807 287 ---KFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEALEVFEKMIAGKET 361 (757)
Q Consensus 287 ---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 361 (757)
..|+..+...|..=...+-..|..-.+..+....+.-|+.- -..||..-...|.+.+.++-|+.+|...++.
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--- 545 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--- 545 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---
Confidence 46777888999999999999999999999999988877653 2468899999999999999999999999986
Q ss_pred CcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 362 AEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP 441 (757)
Q Consensus 362 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (757)
++.+...|...+..--..|..++-..+|++. ...++.....|.....-+-..|++..|..++.+..+....
T Consensus 546 ----fp~k~slWlra~~~ek~hgt~Esl~Allqka----v~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 546 ----FPCKKSLWLRAAMFEKSHGTRESLEALLQKA----VEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred ----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHH----HHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 4777888988888888899999999999998 5567778888999999999999999999999999987544
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048807 442 NVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLIS 521 (757)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 521 (757)
+...|..-+..-....+++.|..+|.+.... .++..+|.--+...--.++.++|++++++.++. ++.-...|..+..
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 7788999999999999999999999998875 567788887777777789999999999998876 2334557888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSA 601 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 601 (757)
.+-+.++.+.|...|..-.+. ++..+..|..+...--+.|.+-.|..++++..-.+ |.+...|-..|.+-.+.|..++
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 899999999999988876665 34466788888888889999999999999998876 7788999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 602 ARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 602 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
|..+..++++. ++.+...|..-|....+.++-..+...+++.. -|......+...+....++++|.+.|.+.+
T Consensus 772 a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce------~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 772 AELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE------HDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 45567788888888777777666666665443 466678888889999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 048807 682 VKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEIL 730 (757)
Q Consensus 682 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l 730 (757)
..+ +.+-.+|..+...+.++|.-++-.+++.+... ..|.+ ..|.++
T Consensus 845 k~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 845 KKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred ccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 863 33557888888999999998888888888874 46765 445444
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=6.2e-14 Score=148.71 Aligned_cols=620 Identities=12% Similarity=0.080 Sum_probs=336.3
Q ss_pred HHHHHHHHH--HhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC-CCcchHHHHHHH
Q 048807 114 AYQAVFELA--IRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNL-RNTHVRNVLIDV 190 (757)
Q Consensus 114 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~ 190 (757)
....+++.+ ...+|+.++|..++..+++.. |....+|-+|...|-..|+.++++..+-.+.... .|...|-.+...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 355556543 244689999999998888765 7889999999999999999999998877666543 345689999999
Q ss_pred HHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHH----HHH
Q 048807 191 LLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLT----QLI 266 (757)
Q Consensus 191 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~li 266 (757)
..+.|.++.|+-.|.++++.+ |...-+..--..++ .+.+....|...+.++.....+.|..-.- ..+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~----p~n~~~~~ers~L~-----~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN----PSNWELIYERSSLY-----QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC----CcchHHHHHHHHHH-----HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 999999999999999998864 33322111111111 11222344555555555443222222222 234
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc---------------
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDA-PLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV--------------- 330 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------------- 330 (757)
..|...++.+.|++.++.....+. ..+...++.++..|.+...++.|......+..+...+|..
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 445556666666666666665221 1234456666666666666666666666665522222211
Q ss_pred -------hHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048807 331 -------TFG----TIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLR 399 (757)
Q Consensus 331 -------~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 399 (757)
.|. .+.-++......+....+.....+.+. .+.-++..|.-+.++|...|++.+|.++|..+.
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~----~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~-- 441 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV----WVSDDVDLYLDLADALTNIGKYKEALRLLSPIT-- 441 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC----ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh--
Confidence 111 122233334444444444444444331 012234456666666666666666666666664
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------
Q 048807 400 LQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK------- 472 (757)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 472 (757)
....-.+...|-.+..+|...|..++|.+.|+..+... +-+...-.+|...+.+.|+.++|.+.+..+..-
T Consensus 442 -~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 442 -NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred -cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 22222345566666666666666666666666666542 113344455555666666666666666664321
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 048807 473 -GLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGC-----SADSVVYFTLISGLCQAGRMNDASLVVSKLKEA---- 542 (757)
Q Consensus 473 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 542 (757)
+..|+........+.+.+.|+.++=+.+-..|+.... .|+..--.....+-...+...+-......+...
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 1223333333445556666666665555555443210 110000000000000011111111111111111
Q ss_pred -------------------CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHHc
Q 048807 543 -------------------GFRPDI--VCYNHLISGFCKKKMLDKAYEVLQEMEDIGM-TPNSV----TYNTLISFLSKS 596 (757)
Q Consensus 543 -------------------g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~li~~~~~~ 596 (757)
|..-+. ..+..++..+++.+++++|+.+...+.+... ..+.. .-...+.+....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~ 679 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYA 679 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 100000 1235566677888888888888777765421 11111 123344556677
Q ss_pred CCHHHHHHHHHHHHhC-CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 597 GNFSAARRVLKKMVKE-GLV--P-TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVEL 672 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~-~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 672 (757)
+++..|...++.|... +.. | -...|+...+...+.|+-.--.+.+..+.. .....+.......+.-....+.+.-
T Consensus 680 ~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~-~~~~~~~~l~~i~gh~~~~~~s~~~ 758 (895)
T KOG2076|consen 680 RDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV-KNKDDTPPLALIYGHNLFVNASFKH 758 (895)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCccCCcceeeeechhHhhccchHH
Confidence 8888888888887764 111 1 123444444455555544333344433332 1111112223333444556788889
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHHHH----------cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCH
Q 048807 673 ALSLMEEMKVKEVRPNTNTYN-AMFKGLRQ----------KNMLDKAFKLMDRMIEHACH-PDYISMEILTEWLSEAGQT 740 (757)
Q Consensus 673 A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~ 740 (757)
|+..+-+.-.. .|+....+ +++.++.+ +-..-.++.++.+..+.... .-..++.+++.+|...|-+
T Consensus 759 Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~ 836 (895)
T KOG2076|consen 759 ALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLV 836 (895)
T ss_pred HHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccH
Confidence 99877776653 46643333 33333322 12244567777666653221 2348888899999999999
Q ss_pred HHHHHHHhhc-hhcc
Q 048807 741 EKLKKFVQGY-AVSA 754 (757)
Q Consensus 741 ~~A~~~~~~~-~~~~ 754 (757)
.-|.+++++. ...|
T Consensus 837 ~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 837 HLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHhCCCc
Confidence 9999999884 4444
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.1e-15 Score=148.73 Aligned_cols=471 Identities=14% Similarity=0.145 Sum_probs=320.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc------
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASC-NALLNALGREGDFKRMNQLFTEMKENDIEPSV------ 329 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------ 329 (757)
..-.+...|..-|.......+|+..++-+.+...-|+.-.. ..+...+.+..+|.+|++.|+-.+.. .|++
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~ri 276 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRI 276 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHH
Confidence 34455666777888888889999999888877665665433 34567788888999999998877765 2332
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---------
Q 048807 330 VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL--------- 400 (757)
Q Consensus 330 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------- 400 (757)
...+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|....
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi 348 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI 348 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc
Confidence 23444555677889999999999988874 5777777677777777889888888888875210
Q ss_pred cCCCCCCHHHHHHHH-----HHHHHcC--CHHHHHHHHHHHHhCCCCCCHHH-------------HH--------HHHHH
Q 048807 401 QKGCMPNAVTYNCLI-----NGFCKSG--NIEKGLELFHLMKQEGVTPNVVT-------------LN--------TLVDG 452 (757)
Q Consensus 401 ~~~~~~~~~~~~~li-----~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~-------------~~--------~li~~ 452 (757)
.+...|+....+.-| .-.-+.+ +.++++-.-.++..--+.|+... +. .-...
T Consensus 349 ~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~ 428 (840)
T KOG2003|consen 349 KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGE 428 (840)
T ss_pred CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 111223333333222 2222211 22333322223322112222110 11 11234
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC-N-VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMN 530 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (757)
+.+.|+++.|.+++.-..+..-+.-...-+.|-..+. + -.++..|.+.-+..+..+ .-+......-...-...|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 6788999999999888777643322223333332222 2 235777777766665432 223333333333445689999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 531 DASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMV 610 (757)
Q Consensus 531 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (757)
+|.+.|++.+...-. .....-.+.-.+-..|++++|++.|-++... +..+..+...+...|....+..+|++++.+..
T Consensus 508 ka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999999876322 2222333444577899999999999887543 23467777888999999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 611 KEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTN 690 (757)
Q Consensus 611 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 690 (757)
.. ++.|......|...|-+.|+-.+|++.+-.--. -.+.|..+...|..-|....-+++|+.+|++..- +.|+..
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 65 566889999999999999999999998765444 3556788888899999999999999999999865 689999
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 691 TYNAMFKGL-RQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFV 747 (757)
Q Consensus 691 ~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 747 (757)
-|..++..| .+.|++++|.++|+....+ ++.|.....-|++.+...|. .++.++-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~ 716 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYA 716 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHH
Confidence 998877655 6789999999999999875 77788888889988888774 3344433
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1e-12 Score=129.20 Aligned_cols=471 Identities=12% Similarity=0.104 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...|...+.+=.++..+..|..++++++..-|.. ...|-..+.+=-..|+...|.++|++..+- .|+...|.+.|+.
T Consensus 107 itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKF 183 (677)
T ss_pred chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 3455555555566666666666666666543221 234444444445556666666666666653 5666666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
-.+....+.|..++++.+- +.|++.+|.-.+..-.++|....|..+++...+.... ...+...+++....-
T Consensus 184 ElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fE 254 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-DEEAEILFVAFAEFE 254 (677)
T ss_pred HHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHH
Confidence 6666666666666666554 4566666666666666666666666666665432111 112233444444444
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChH---HHHH-----HHHHHHHCCCCCCHHHHHHHHHHH
Q 048807 419 CKSGNIEKGLELFHLMKQEGVTPN--VVTLNTLVDGMCRHGRIN---SAVE-----FFQEVTRKGLCANAVTYTILITAF 488 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~---~A~~-----~~~~~~~~~~~~~~~~~~~li~~~ 488 (757)
.++..++.|.-+|+-.+++ ++.+ ...|......--+-|+.. +++- -|+.+++.+. .|-.+|-..+..-
T Consensus 255 e~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~ 332 (677)
T KOG1915|consen 255 ERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLE 332 (677)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHH
Confidence 4556666666666666654 2212 223333333323334332 2221 1333444332 2556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH--hhHHHHHH--------HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048807 489 CNVNNFQEAIKWFDDMSRAGCSADS--VVYFTLIS--------GLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGF 558 (757)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~--------~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 558 (757)
...|+.+...++|++.+.. ++|-. ..|...|- .-....+.+.+.++|+..++. ++...+|+..+--+|
T Consensus 333 e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmy 410 (677)
T KOG1915|consen 333 ESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMY 410 (677)
T ss_pred HhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHH
Confidence 6667777777777777654 33321 11211111 112456677777777777763 343445554444333
Q ss_pred H----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 559 C----KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHV 634 (757)
Q Consensus 559 ~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 634 (757)
+ ++.++..|.+++...+.. .|...++...|..-.+.++++.+..++++.++-+ +-+..+|......-...|+.
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhH
Confidence 3 566777777777766643 5666777777777777777777777777777754 22566666666666677777
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----HcC------
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLR-----QKN------ 703 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-----~~g------ 703 (757)
+.|..+|.-......+......|-+.|+.-...|.++.|..+++++++. .+....|.++...-. +.|
T Consensus 488 dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~ 565 (677)
T KOG1915|consen 488 DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAEL 565 (677)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhh
Confidence 7777777776664333334456667777777777777777777777764 233445555544322 223
Q ss_pred -----CHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH----HhcCCHHHHHHHHhhch
Q 048807 704 -----MLDKAFKLMDRMIEH--ACHPDYISMEILTEWL----SEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 704 -----~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~ 751 (757)
....|.++|+++... ...| ..--..|+.+. ...|........-.+||
T Consensus 566 e~~~~~~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 566 EITDENIKRARKIFERANTYLKESTP-KEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 455677777776432 1222 22222333333 23465555555555554
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=9.6e-15 Score=142.14 Aligned_cols=484 Identities=14% Similarity=0.140 Sum_probs=315.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc--cCCCc-chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccH
Q 048807 145 PLSINSATLLIRFFGKVSMYDYSLLVYNELDN--NLRNT-HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTG 221 (757)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~ 221 (757)
..+..+...|.+.|....+..+|+..|+-+.. ..||. ..--.+++.+.+...+.+|+++|+-.+.. .|...-
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq----vpsink- 272 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ----VPSINK- 272 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh----ccccch-
Confidence 34556677788889889999999988887654 24444 23345678889999999999999877663 232210
Q ss_pred HHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 222 DIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALL 301 (757)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 301 (757)
+ .-....+.+...+.+.|.+++|+..|+...+.. |+..+-..|+
T Consensus 273 -------------------~---------------~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~ 316 (840)
T KOG2003|consen 273 -------------------D---------------MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLI 316 (840)
T ss_pred -------------------h---------------hHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhh
Confidence 0 011234445556778899999999999988864 5655544455
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCccchH--------HHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCC
Q 048807 302 NALGREGDFKRMNQLFTEMKENDIEPSVVTF--------GTIINRLCKL-----------YRADEALEVFEKMIAGKETA 362 (757)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~ 362 (757)
-++..-|+.++..+.|.+|+.--..||..-| ..|+.--.+. .+.++++-.-.+++.--
T Consensus 317 i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapv--- 393 (840)
T KOG2003|consen 317 ICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPV--- 393 (840)
T ss_pred hhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccc---
Confidence 5555678999999999999864322332211 2222211111 11122222222222111
Q ss_pred cccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048807 363 EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN 442 (757)
Q Consensus 363 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 442 (757)
+.|+-.. +| +-.++.++.-. .. +.-...-..-..-|.++|+++.|+++++-+.+..-+.-
T Consensus 394 ---i~~~fa~------g~------dwcle~lk~s~---~~--~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 394 ---IAPDFAA------GC------DWCLESLKASQ---HA--ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred ---cccchhc------cc------HHHHHHHHHhh---hh--hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 2222211 11 11122222111 00 00001111223457789999999999998887643322
Q ss_pred HHHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH--
Q 048807 443 VVTLNTLVDGMCR--HGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFT-- 518 (757)
Q Consensus 443 ~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-- 518 (757)
...-+.|-..+.- -.++.+|.++-+..+...- -+......-...-...|++++|...|++.+.. |..+-.+
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealf 528 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALF 528 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHH
Confidence 3333333333322 3456777777666654321 13333333333444678999999999999876 3333333
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 519 -LISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSG 597 (757)
Q Consensus 519 -li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 597 (757)
+.-.+-..|+.++|+..|-++... +..+......+.+.|....+..+|++++.+.... ++.|+...+.|...|-+.|
T Consensus 529 niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 529 NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEG 606 (840)
T ss_pred HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhccc
Confidence 333567889999999998776543 2336777888899999999999999999888765 4778999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 048807 598 NFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLC-KNNQVELALSL 676 (757)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~ 676 (757)
+-.+|.+.+-+--+. ++-+..+..-|...|....-+++|+.+|++..- +.|+..-|..++..|. +.|++.+|.++
T Consensus 607 dksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 607 DKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred chhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999987765553 456788888888888888889999999998754 6799999998876654 67999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 677 MEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 677 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
++....+ ++-|...+.-|+..+...|.
T Consensus 683 yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9998765 56688888888888877764
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.6e-13 Score=130.66 Aligned_cols=428 Identities=17% Similarity=0.221 Sum_probs=287.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCChh-HHHHHHHHHHHCCCCCccchHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR--EGDFK-RMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~-~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+++-|.|+.+ ...|.+.++.-+|++|...|.+.+...-..|...-+- ..+.- .-++.|-.|...| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3445555554 4578899999999999999888777666665544332 22222 2345566666655 3334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
+.|.+.+ -+|+. .+....++..+|.++|+--..+.|.+++++.. ....+.+..++|.+|
T Consensus 191 -----K~G~vAd--L~~E~-----------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~---~~k~kv~~~aFN~lI 249 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFET-----------LPKTDETVSIMIAGLCKFSSLERARELYKEHR---AAKGKVYREAFNGLI 249 (625)
T ss_pred -----ccccHHH--HHHhh-----------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH---HhhheeeHHhhhhhh
Confidence 3454433 23332 35667788889999998888888888888876 555577888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINS----AVEFFQEVTRKGLCANAVTYTILITAFCNV 491 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 491 (757)
.+-.-. ...+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.
T Consensus 250 ~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 250 GASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 764432 226788888888888999999999998888888765 456777888888888888888888888887
Q ss_pred CCHHH-HHHHHHHHHHc----C----CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHH
Q 048807 492 NNFQE-AIKWFDDMSRA----G----CSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAG----FRPD---IVCYNHLI 555 (757)
Q Consensus 492 g~~~~-A~~~~~~m~~~----~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li 555 (757)
++..+ |..++.++... . .+.|..-|...++.|.+..+.+-|.++..-+.... +.|+ ..-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 77644 45555554331 1 22345566777778888888888877765544321 2222 23466777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C-
Q 048807 556 SGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG-H- 633 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~- 633 (757)
...|+....+.-...|+.|+-.-+-|+..+...++.+..-.|+++-.-+++.++...|...+.....-++..+++.. +
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp 485 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHP 485 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCC
Confidence 78888888888888888888766677888888888888888888888888888887765444444444444444433 1
Q ss_pred -------HHH-----HHHHHH-------HhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHH
Q 048807 634 -------VDE-----AMKIFK-------ELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEV-RPNTNTYN 693 (757)
Q Consensus 634 -------~~~-----A~~~~~-------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~ 693 (757)
+.. |..+++ ++.+ .. -.....+..+-.+.+.|+.++|.++|.-...++- -|-....+
T Consensus 486 ~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ln 562 (625)
T KOG4422|consen 486 LTPEREQLQVAFAKCAADIKEAYESQPIRQRA-QD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLN 562 (625)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-cc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchh
Confidence 111 111111 2222 22 2344567777888999999999999999865432 23333344
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048807 694 ---AMFKGLRQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 694 ---~l~~~~~~~g~~~~A~~~~~~~~~~g 719 (757)
-+++.-.+.+....|...++-|....
T Consensus 563 Am~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 563 AMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 56666678888999999999887653
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.7e-12 Score=127.74 Aligned_cols=454 Identities=11% Similarity=0.072 Sum_probs=346.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...|.....-=..++++..|..+|++++.-+.. +...|...+.+=.++.....|..+++..+..- +.-...|.-.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 4445555555556678889999999999987644 78899999999999999999999999998752 222344666666
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
+--..|++..|.++|++-.+ ..|+..+|++.|+.-.+-..++.|..++++.. -+.|++.+|-.....
T Consensus 150 mEE~LgNi~gaRqiferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerfV-----~~HP~v~~wikyarF 216 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERFV-----LVHPKVSNWIKYARF 216 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----eecccHHHHHHHHHH
Confidence 66778999999999999987 68999999999999999999999999999974 246999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 048807 418 FCKSGNIEKGLELFHLMKQE-G-VTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN-AVTYTILITAFCNVNNF 494 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 494 (757)
-.+.|.+..|..+|+...+. | -.-+...+.+....-.++..++.|.-+|..+++.-+... ...|..+...--+-|+.
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~ 296 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDK 296 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcch
Confidence 99999999999999988864 1 111234455666666678889999999999988633321 34555555444455654
Q ss_pred H---HHHH-----HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHH--------
Q 048807 495 Q---EAIK-----WFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI--VCYNHLIS-------- 556 (757)
Q Consensus 495 ~---~A~~-----~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~-------- 556 (757)
. +++- -|+++++.+ +.|-.+|-..++.-...|+.+...++|+..... ++|-. ..|...|-
T Consensus 297 ~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 297 EGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHH
Confidence 3 3332 245555554 678888998999888999999999999999876 34421 12222221
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 557 GFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFL----SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
.-....+.+.+.++|+..++. +|....|+.-+--.| .+..++..|.+++...+. ..|-..+|...|..-.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 123578899999999999985 355566666554444 467899999999998885 4688899999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 633 HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE-VRPNTNTYNAMFKGLRQKNMLDKAFKL 711 (757)
Q Consensus 633 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 711 (757)
+++...+++++..+ .+ +.|..+|......-...|+.+.|..+|+-+++.. +......|.+.|+.-...|.++.|..+
T Consensus 452 efDRcRkLYEkfle-~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLE-FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hHHHHHHHHHHHHh-cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 99999999999998 33 3467789888888888999999999999998732 222345778888888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Q 048807 712 MDRMIEHACHPDYISMEILTEWLS 735 (757)
Q Consensus 712 ~~~~~~~g~~p~~~~~~~l~~~~~ 735 (757)
|+++++. .+...+|.+....-.
T Consensus 530 YerlL~r--t~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 530 YERLLDR--TQHVKVWISFAKFEA 551 (677)
T ss_pred HHHHHHh--cccchHHHhHHHHhc
Confidence 9999975 444456666655433
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2e-12 Score=125.55 Aligned_cols=242 Identities=15% Similarity=0.259 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+-+..++..+|.+.||--..+.|.+++++........+..++|.+|.+-.-. ...++..+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4455566666666666666666666666666655556666666666553322 225666666666666666666666
Q ss_pred HHHHHhcCChhHH----HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHHHhh-cC----CCC
Q 048807 336 INRLCKLYRADEA----LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEE-ALGLIEQMRLRL-QK----GCM 405 (757)
Q Consensus 336 i~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~-~~----~~~ 405 (757)
+.+..+.|+++.| .+++.+|.+.| +.|...+|..+|..+++.++..+ |..++.++.... .+ ..+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiG------VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIG------VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhC------CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 6666666665543 34445555555 66666666666666666555432 333333332110 11 112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 048807 406 PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEG----VTPN---VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA 478 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 478 (757)
.|..-|..-+..|....+.+-|.++...+.... +.|+ ..-|..+....|+....+.-..+|+.|+-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 234445555555555556555555554443211 1111 122344444555555555555555555544444444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 479 VTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
.+...++++..-.|.++-.-+++.++...
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 44444555544455555555555544443
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.5e-13 Score=132.39 Aligned_cols=215 Identities=16% Similarity=0.218 Sum_probs=119.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 525 QAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARR 604 (757)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 604 (757)
-.|+.-.|..-|+..++....++ ..|-.+..+|....+.++....|++....+ +.|..+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34556666666666665533322 225555556666666666666666666655 4455556555666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048807 605 VLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684 (757)
Q Consensus 605 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 684 (757)
-|++.+... +-+...|..+..+..+.+++++++..|++..+ ..+..+..|+.....+..++++++|.+.|+..++.
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 666666542 11344555555555566666666666666665 33334445666666666666666666666666542
Q ss_pred CCCC-------HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 685 VRPN-------TNTY--NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 685 ~~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
.|. ...+ ..++. +.-.+++..|.+++.++++ ++|.. ..|..|.....+.|+.++|.++|++
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred -ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 222 1111 11111 1123566666666666664 34443 4555666666666666666666654
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.3e-14 Score=147.47 Aligned_cols=289 Identities=13% Similarity=0.037 Sum_probs=227.6
Q ss_pred ChhHHHHHHHHhhccCCCc-chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChH
Q 048807 163 MYDYSLLVYNELDNNLRNT-HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDE 241 (757)
Q Consensus 163 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (757)
+..+|...|.++..-..|+ .+..-++.+|...+.+++|++.|+.+.+.++-..-+...|.++++-+-..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---------- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---------- 403 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----------
Confidence 4678888888865544454 45677999999999999999999999887655444444566666655432
Q ss_pred HHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048807 242 ELVGLVSK-FAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEM 320 (757)
Q Consensus 242 ~~~~~~~~-~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 320 (757)
-++..+.+ +++. -+..+.+|.++.++|.-+++.+.|++.|+++++.++. ...+|+.+..-+....+++.|...|+..
T Consensus 404 v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 22333332 3333 3667889999999999999999999999999988754 7889999999999999999999999998
Q ss_pred HHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 048807 321 KENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 321 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 400 (757)
+..+ +.+-.+|..+...|.+.++++.|.-.|+++++.+ |.+.+....+...+.+.|+.|+|++++++..
T Consensus 482 l~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~--- 550 (638)
T KOG1126|consen 482 LGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-------PSNSVILCHIGRIQHQLKRKDKALQLYEKAI--- 550 (638)
T ss_pred hcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---
Confidence 8764 3456678888889999999999999999998876 6778888888889999999999999999884
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 048807 401 QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA 476 (757)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 476 (757)
.-.+.|+..-...+..+...+++++|++.++++++. ++-+..++..+...|.+.|+.+.|+.-|.-+.+..++.
T Consensus 551 -~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 551 -HLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred -hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 233556777777788888889999999999999886 33356778888889999999999998888888765443
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.64 E-value=2.7e-09 Score=109.44 Aligned_cols=563 Identities=12% Similarity=0.115 Sum_probs=309.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCC---CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHH
Q 048807 149 NSATLLIRFFGKVSMYDYSLLVYNELDNNLR---NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVF 225 (757)
Q Consensus 149 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~ 225 (757)
..+-.-+....++|++..-+..|+++...-| ...+|.-.+...-..|.++-++.+|++-+.- .|.. ....+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~--~eeyi 176 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEA--REEYI 176 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHH--HHHHH
Confidence 4566666777778888888888877654322 1245777777777777787888888877663 3333 12222
Q ss_pred HHHHhhhhhccccChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHhCCCCCCHHH
Q 048807 226 YALMRREHVKNSVTDEELVGLVSKFAEH------GVFPNAVWLTQLITRFCRKGKTDE---AWDVLHVLMKFDAPLEAAS 296 (757)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~ 296 (757)
.-++.. ...+++.+.+..++.. .-+.+--.|.-+-+...+.-+.-. ...+++.+..+-...-...
T Consensus 177 e~L~~~------d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~L 250 (835)
T KOG2047|consen 177 EYLAKS------DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFL 250 (835)
T ss_pred HHHHhc------cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHH
Confidence 222222 1113333333322211 113444455555555555444332 2334444444322222467
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHH
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTL 376 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (757)
|++|.+.|.+.|.+++|..+|++.+.. ...+.-|+.+.+.|+.-....-+..+ +...+.+ . -+.+...+...
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~--~---n~ed~~dl~~~ 322 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEES--G---NEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcc--c---ChhhhhhHHHH
Confidence 889999999999999999999888775 34566677777777653322212111 1000011 0 11122222111
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHHH
Q 048807 377 IDGLCK--VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN------VVTLNT 448 (757)
Q Consensus 377 i~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ 448 (757)
+..+.. .++. -++.... ....+.++..|..-... ..|+..+-...+.++.+. +.|. ...|..
T Consensus 323 ~a~~e~lm~rr~----~~lNsVl---LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 323 MARFESLMNRRP----LLLNSVL---LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVE 392 (835)
T ss_pred HHHHHHHHhccc----hHHHHHH---HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHH
Confidence 111110 0000 0111111 22335566666655443 346666777777777654 2232 234667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------
Q 048807 449 LVDGMCRHGRINSAVEFFQEVTRKGLCAN---AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCS--------------- 510 (757)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------- 510 (757)
+.+.|-..|+++.|..+|++..+-..+-- ..+|..-..+-.+..+++.|+++.++.....-.
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 77777778888888888877776543321 335555555556666777777777665432111
Q ss_pred --CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 048807 511 --ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS-VTYN 587 (757)
Q Consensus 511 --~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 587 (757)
.+...|...++..-..|-++....+|+.+.+..+. ++...-.....+-...-++++.++|++-+..--.|+. ..|+
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 12234555566666677777778888887776554 3322222333344555677777777765554334444 3566
Q ss_pred HHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhhhcCCCCCCH--HHHHHH
Q 048807 588 TLISFLSK---SGNFSAARRVLKKMVKEGLVPTVVTYGALIH--AFCVNGHVDEAMKIFKELSSSSNVSPNT--VIYNIL 660 (757)
Q Consensus 588 ~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l 660 (757)
..+.-+.+ ...++.|..+|+++++ |++|...-+.-|+. .-.+.|....|+.++++... ++++.. ..||..
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 65554443 2367888888888887 56665433222222 22345777888888888665 444432 356766
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHH
Q 048807 661 IDSLCKNNQVELALSLMEEMKVKEVRPNTNTYN---AMFKGLRQKNMLDKAFKLMDRMIEHACHP--DYISMEILTEWLS 735 (757)
Q Consensus 661 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~ 735 (757)
|.--...=-+.....+|++.++. -||...-. -..+.=++.|..+.|..+|...-+. ++| +...|.+.-..=.
T Consensus 629 I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEv 705 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEV 705 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHH
Confidence 65544443445556677777763 45544332 2333446678888888887776554 445 3466777777777
Q ss_pred hcCCHHHHHHHHh
Q 048807 736 EAGQTEKLKKFVQ 748 (757)
Q Consensus 736 ~~g~~~~A~~~~~ 748 (757)
++|+-+-.+++++
T Consensus 706 rHGnedT~keMLR 718 (835)
T KOG2047|consen 706 RHGNEDTYKEMLR 718 (835)
T ss_pred hcCCHHHHHHHHH
Confidence 7787555555543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.1e-11 Score=121.95 Aligned_cols=386 Identities=13% Similarity=0.068 Sum_probs=269.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchH-
Q 048807 254 GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF- 332 (757)
Q Consensus 254 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~- 332 (757)
+...|.+.+-.....+.+.|....|+..|...+..-|- .-.+|..|..... +.+.+ ..... |.+.|..-.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELIT---DIEIL----SILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhhc---hHHHH----HHHHh-cCcccchHHH
Confidence 44667888888888888999999999999998875432 4455555544332 22222 22222 222221111
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 048807 333 -GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTY 411 (757)
Q Consensus 333 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 411 (757)
--+..++-...+.+++++-.+.....| ++.....-+....+.....++++|+.+|+++... ..-.-.|..+|
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~g------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdly 302 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVG------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHH
Confidence 123345666668888888888888877 6666666666667777888999999999998521 11112367777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 412 NCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV 491 (757)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 491 (757)
..++-+ ++.+-+-+ .+.+-.-.=-+--+.|+..+.+-|.-.++.++|..+|++.++.+.. ...+|+.+..-|...
T Consensus 303 SN~LYv--~~~~skLs--~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 303 SNVLYV--KNDKSKLS--YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHHH--HhhhHHHH--HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHh
Confidence 777643 33322221 2211111101123457888888888899999999999999998654 667899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 492 NNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVL 571 (757)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (757)
.+...|++-|+..++.+ |.|-..|..|..+|.-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.+++++|++.|
T Consensus 378 KNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998875 7788899999999999999999999999988864 337889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 572 QEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE----GLVPT--VVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 572 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
......| ..+...+..|...|-+.++.++|...|++.++. |...+ .....-|..-+.+.+++++|........
T Consensus 456 krai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 456 KRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9998877 446688899999999999999999998887752 32222 2222234455667777777766555444
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 646 SSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 646 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
. + ....++|..+++++..
T Consensus 535 ~--~-----------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 535 K--G-----------------ETECEEAKALLREIRK 552 (559)
T ss_pred c--C-----------------CchHHHHHHHHHHHHH
Confidence 3 1 1234667777777664
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.1e-11 Score=116.90 Aligned_cols=364 Identities=10% Similarity=0.017 Sum_probs=246.5
Q ss_pred CCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 048807 326 EPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM 405 (757)
Q Consensus 326 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 405 (757)
..|...+......+-+.|....|+..|...+..- |-.-.+|..|... ..+.+.+..+... .+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~l---it~~e~~~~l~~~--------l~ 222 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSEL---ITDIEILSILVVG--------LP 222 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHh---hchHHHHHHHHhc--------Cc
Confidence 4455544444555667888888888888876542 4444444444433 2333333322221 12
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHH
Q 048807 406 PN--AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC--ANAVTY 481 (757)
Q Consensus 406 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 481 (757)
.| ...=-.+..++......+++++-.......|++-+...-+....+.....++++|+.+|+++.+..+- .|..+|
T Consensus 223 ~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdly 302 (559)
T KOG1155|consen 223 SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLY 302 (559)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 22 11122344566666678888888888888887766666666666677788899999999999887431 255666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 482 TILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKK 561 (757)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 561 (757)
+.++- .+..+-. +..+-+-...-.+--+.|+..+.+-|+-.++.++|...|++.++.+.. ....|+.+.+-|...
T Consensus 303 SN~LY--v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 303 SNVLY--VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHH--HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHh
Confidence 66553 3322211 112211111101223456677778888889999999999998887533 567888889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 562 KMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIF 641 (757)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 641 (757)
.+...|.+.++.+++.. |.|-..|-.|.++|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|
T Consensus 378 KNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999886 7788899999999999999999999999988853 337888999999999999999999999
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 642 KELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV----KEVRPNT--NTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 642 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.+... .+ ..+...+..|.+.|-+.++.++|...|++-++ .|...+. ..-.-|..-+.+.+++++|..+....
T Consensus 456 krai~-~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 456 KRAIL-LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHh-cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 98887 33 23557788899999999999999988888765 2322221 11222444556777777777766555
Q ss_pred H
Q 048807 716 I 716 (757)
Q Consensus 716 ~ 716 (757)
.
T Consensus 534 ~ 534 (559)
T KOG1155|consen 534 L 534 (559)
T ss_pred h
Confidence 4
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=1.8e-12 Score=137.47 Aligned_cols=293 Identities=13% Similarity=0.075 Sum_probs=160.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048807 420 KSGNIEKGLELFHLMKQEGVTPN-VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAI 498 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 498 (757)
..|+++.|.+.+.+..+.. |+ ...+-.......+.|+++.|.+++.++.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3566666666665555432 22 22333344555555666666666666554432222223333355555666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHH
Q 048807 499 KWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLIS---GFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 499 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~~~ 575 (757)
..++.+.+.. |.+..++..+...+.+.|++++|.+++..+.+.+..+.......-.. .....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666553 44455555666666666666666666666665543322111111111 1122222222333444444
Q ss_pred hCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 048807 576 DIGM---TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVT---YGALIHAFCVNGHVDEAMKIFKELSSSSN 649 (757)
Q Consensus 576 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 649 (757)
+... +.+...+..++..+...|+.++|.+++++.++.. ||... ...........++.+.+.+.+++..+...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 3311 1366677777777888888888888888877753 33321 11111122334666777777777666222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 650 VSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 650 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
-.|+.....+++..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22221456677777777888888888777433322467777777777777788888888777777643
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=3.7e-12 Score=134.31 Aligned_cols=286 Identities=10% Similarity=0.064 Sum_probs=178.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKW 500 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (757)
.|++++|.+.+....+..-.| ...|........+.|+++.|.+++.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 466666665555544431111 1222222334456666666666666665542221111212234556666666666666
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 501 FDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI-------VCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 501 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
++++.+.. |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 66666554 445556666666666666666666666666665433221 1222333333334445555666665
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 048807 574 MEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN 653 (757)
Q Consensus 574 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 653 (757)
+.+. .+.+......+...+...|+.++|.+++++..+. +|+... .++.+....++.+++.+..+...+ ..+.|
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~ 327 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDT 327 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCC
Confidence 5443 2456777778888888888888888888888874 344422 123344455888888888888877 33445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 654 TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 654 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
...+.++...|.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+.++|.+++++.+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666778888888888888888888888874 68888888888888888888888888888764
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.1e-12 Score=125.05 Aligned_cols=405 Identities=15% Similarity=0.138 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc-cchHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE-AASCNALLNALGREGDFKRMNQLFTEMKENDIEPS-VVTFGTIINR 338 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~ 338 (757)
.+....+-|.++|++++|++.+..++... |+ ++-|.....+|...|++++..+-..+.++. .|+ +..+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 34456778889999999999999999864 45 778888889999999999999988888876 354 3445555666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH-----Hhh---cCCCCCCHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR-----LRL---QKGCMPNAVT 410 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~---~~~~~~~~~~ 410 (757)
+-..|++++|+.-..-. .+..++....-.--+.+++.+.. ... .....|....
T Consensus 193 ~E~lg~~~eal~D~tv~-------------------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f 253 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVL-------------------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF 253 (606)
T ss_pred HHhhccHHHHHHhhhHH-------------------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 67777777765432221 12222211111112222222110 000 1122333332
Q ss_pred HHHHHHHHHHc---------C----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---C
Q 048807 411 YNCLINGFCKS---------G----NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG---L 474 (757)
Q Consensus 411 ~~~li~~~~~~---------g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 474 (757)
..+....+... . ...++.+.+..-.+ ..+..|.+.+.+-.... .
T Consensus 254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~--------------------e~Y~~a~~~~te~~~~~~~~~ 313 (606)
T KOG0547|consen 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLE--------------------EGYLKAYDKATEECLGSESSL 313 (606)
T ss_pred HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCc--------------------hhHHHHHHHHHHHhhhhhhhc
Confidence 22222222110 0 01111111111111 12222322222211110 0
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048807 475 CAN---------AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR 545 (757)
Q Consensus 475 ~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 545 (757)
..+ ..+...-...+.-.|+...|..-|+..+..... +...|--+..+|....+.++....|......+..
T Consensus 314 ~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~ 392 (606)
T KOG0547|consen 314 SVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE 392 (606)
T ss_pred cccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC
Confidence 001 112222223345577888888888888876422 2233777777888888888888888888876533
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 546 PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625 (757)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (757)
+..+|..-..++.-.+++++|..=|++.+... +.+...|-.+.-+..+.++++++...|++..++ ++.-+..|+...
T Consensus 393 -n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA 469 (606)
T KOG0547|consen 393 -NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFA 469 (606)
T ss_pred -CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHH
Confidence 56677777777777888888888888888775 456667777777777888888899999888876 455677888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPN---------TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
..+..++++++|.+.|+..++ +.|+ +.+--.++-.-. .+++.+|.+++++..+.. +.....|.+|.
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tla 544 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLA 544 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHH
Confidence 888888899999988888776 2232 112222222222 378889999999888742 22445788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 048807 697 KGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~ 717 (757)
..-.+.|+.++|+++|++...
T Consensus 545 q~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 545 QFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888899999999999998864
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=4.8e-12 Score=134.27 Aligned_cols=288 Identities=12% Similarity=0.025 Sum_probs=215.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHH
Q 048807 454 CRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDAS 533 (757)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 533 (757)
...|+++.|.+.+.+..+.... ....+-.....+.+.|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4589999999999988776432 233444556778899999999999999887632222234444688889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 048807 534 LVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNT----LISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 534 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m 609 (757)
..++.+.+..+. +...+..+...|.+.|++++|.+.+..+.+.+.. +...+.. ....+...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998533 6778889999999999999999999999988743 3333321 111223333334444566665
Q ss_pred HhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 610 VKEGL---VPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI---YNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 610 ~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
.+... +.+...+..++..+...|+.++|.+.+++..+. .||... ...........++.+.+.+.+++..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55421 137888899999999999999999999999882 233321 122222334457889999999998875
Q ss_pred CCCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 684 EVRP-NT--NTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 684 g~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
.| |+ ....++++.+.+.|++++|.++|++.......||...+..+...+.+.|+.++|.+++++
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34 44 566799999999999999999999543334689998899999999999999999999987
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=7.4e-12 Score=132.01 Aligned_cols=283 Identities=12% Similarity=0.088 Sum_probs=220.9
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCh
Q 048807 383 VGKQEEALGLIEQMRLRLQKGCMPN-AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTL--NTLVDGMCRHGRI 459 (757)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~ 459 (757)
.|++++|++.+.... .. .++ ...|........+.|+++.|.+.+.++.+. .|+...+ ......+...|++
T Consensus 97 eGd~~~A~k~l~~~~---~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNA---DH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHH---hc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 799999998888764 21 122 333444455568999999999999999875 4454322 3447788999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCChhHH
Q 048807 460 NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADS-------VVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A 532 (757)
++|...++++.+..+. +..+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998654 7888899999999999999999999999987644322 1233334444444555666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 533 SLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE 612 (757)
Q Consensus 533 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (757)
.++++.+.+. .+.++.....+...+...|+.++|.+++++..+. ++|.... ++.+....++.+++.+..++..+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 6666666443 2457888899999999999999999999999885 5665322 233444569999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 613 GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 613 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
. +-|...+..+...+.+.|++++|.+.|+...+ ..|+...+..+...+.+.|+.++|..++++...
T Consensus 324 ~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 H-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 34677788999999999999999999999987 469999999999999999999999999998864
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=6.9e-15 Score=148.15 Aligned_cols=262 Identities=16% Similarity=0.219 Sum_probs=88.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFD-APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 342 (757)
.+...+.+.|++++|++++....... ++.|...|..+.......|+++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677777888888888885544433 33456666666667777778888888888877765 2245556566555 577
Q ss_pred CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 048807 343 YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422 (757)
Q Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (757)
+++++|.+++++..+. .++...+..++..+.+.++++++.++++.+.. ....+.+...|..+...+.+.|
T Consensus 91 ~~~~~A~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEE--LPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCC
T ss_pred cccccccccccccccc--------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcC
Confidence 7777777777766543 24555566677777777777777777777641 2223456667777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFD 502 (757)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (757)
+.++|++.+++.++.... |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|+.+|+
T Consensus 161 ~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccc
Confidence 777777777777775322 45666677777777777777666666665543 2344556667777777777777777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 503 DMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLK 540 (757)
Q Consensus 503 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 540 (757)
+..+.. +.|......+..++.+.|+.++|..+.++..
T Consensus 239 ~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 239 KALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccc-ccccccccccccccccccccccccccccccc
Confidence 766643 4466666667777777777777776665543
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=8.4e-12 Score=117.37 Aligned_cols=291 Identities=15% Similarity=0.146 Sum_probs=182.3
Q ss_pred CChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHH
Q 048807 308 GDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQE 387 (757)
Q Consensus 308 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 387 (757)
.+.++|.++|-+|.+.+ +-+..+..+|.+.|-+.|..|.|++++..+.++. +.....-..+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHhhhhh
Confidence 56677777777777653 2344555667777777777777777777776532 1111122344556777788888888
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHH
Q 048807 388 EALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV----VTLNTLVDGMCRHGRINSAV 463 (757)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~ 463 (757)
.|+++|..+. .++ .--......|+..|-+..++++|++.-+++.+.+..+.. ..|.-+...+....+++.|.
T Consensus 125 RAE~~f~~L~---de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 125 RAEDIFNQLV---DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred HHHHHHHHHh---cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 8888888774 212 223456677888888888888888888888877544432 23555666666667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048807 464 EFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAG 543 (757)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 543 (757)
.++.+..+.+.. .+.+--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 777777776433 3334445566777777777777777777776544344556667777777777777777777766653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 048807 544 FRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK---SGNFSAARRVLKKMVK 611 (757)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 611 (757)
+....-..+........-.+.|...+.+-+.. .|+...+..+++.... .|...+-...+++|+.
T Consensus 280 --~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 --TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333344444444444455565555555544 5677777777765432 2334555555555554
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=6.7e-09 Score=106.68 Aligned_cols=541 Identities=12% Similarity=0.133 Sum_probs=291.1
Q ss_pred ChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHH
Q 048807 128 SPESLFDLYKACKDQNIPL--SINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLD 205 (757)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 205 (757)
....-...|+++... +|. -..+|...++-....|..+-+..++++-....| ...+--|.-+++.+++++|-+.+.
T Consensus 117 ~iT~tR~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P--~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 117 LITRTRRTFDRALRA-LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP--EAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred hHHHHHHHHHHHHHh-CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH--HHHHHHHHHHHhccchHHHHHHHH
Confidence 334444445554332 122 224566666666666667777777766554322 235555677777777777777777
Q ss_pred HHHhccCCCC---C-CcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHHcCChhH
Q 048807 206 EMLDRESQFP---V-NELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGV--FPN--AVWLTQLITRFCRKGKTDE 277 (757)
Q Consensus 206 ~m~~~~~~~~---p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~ 277 (757)
..+..+..+. + +...+..+..-+......+...+ + +.++..|+ .+| ...|++|.+-|.+.|.+++
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln---v----daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN---V----DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC---H----HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 6654332111 1 11122222222222211111111 1 12233333 233 5689999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--HCCCCCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 278 AWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMK--ENDIEPSVVTFGTIINRLCKLYRADEALEVFEKM 355 (757)
Q Consensus 278 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 355 (757)
|..+|++.+.. ...+.-++.+-++|++-.+-.-+..+= +. +.+-.-+...+ +-....|+.+
T Consensus 267 arDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl-------------~~~~a~~e~l 329 (835)
T KOG2047|consen 267 ARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDL-------------ELHMARFESL 329 (835)
T ss_pred HHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhH-------------HHHHHHHHHH
Confidence 99999998874 234556677777776532222221111 11 11111111221 1222222222
Q ss_pred HhCCCCCc-----ccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 048807 356 IAGKETAE-----ISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--NAVTYNCLINGFCKSGNIEKGL 428 (757)
Q Consensus 356 ~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 428 (757)
+....... ..-+.++..|..-+..+ .|+..+-...+.+..........+ -...|..+.+.|-..|+++.|.
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 22110000 00134455555544433 455555556665553211111111 1235666777777777777777
Q ss_pred HHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHH
Q 048807 429 ELFHLMKQEGVTPN---VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC-----------------ANAVTYTILITAF 488 (757)
Q Consensus 429 ~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~li~~~ 488 (757)
.+|++..+...+-- ..+|..-...=.+..+++.|+++.+.+....-. .+..+|..+++.-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 77777766533211 234444555555566667777766655432111 1334566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCCH
Q 048807 489 CNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIV-CYNHLISGFCK---KKML 564 (757)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~---~g~~ 564 (757)
-..|-++....+|+++++..+. ++.........+-.+.-++++.++|++-...-..|++. .|+..+.-+.+ ..++
T Consensus 488 Es~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 6778888888899988876432 22222223333445666788888887765553345543 56665554443 3468
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 048807 565 DKAYEVLQEMEDIGMTPNSVTYNTLI--SFLSKSGNFSAARRVLKKMVKEGLVPT--VVTYGALIHAFCVNGHVDEAMKI 640 (757)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 640 (757)
+.|..+|++.++ |++|...-+--|+ ..--+.|....|+.++++.... +++. ...|+..|.--...=-+.....+
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 899999999998 6676554332222 2223568888899999987654 3332 24566555443333334445666
Q ss_pred HHHhhhcCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCC
Q 048807 641 FKELSSSSNVSPNTVI---YNILIDSLCKNNQVELALSLMEEMKVKEVRP--NTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 641 ~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~ 704 (757)
|++.++. -||... ..-..+.-++.|.++.|..++.--.+. +.| +...|.+.-..=.++|+
T Consensus 645 YekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 645 YEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 7777662 244432 233445567789999999988776653 234 56677777777788888
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.8e-12 Score=133.67 Aligned_cols=282 Identities=14% Similarity=0.095 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHH-
Q 048807 241 EELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAP--LEAASCNALLNALGREGDFKRMNQLF- 317 (757)
Q Consensus 241 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~- 317 (757)
.+|..+|..+- .-+.....+...+..+|...+++++|+.+|+.+.+..+. .+...|.+.+..+-+. -++..+
T Consensus 336 ~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 34444554422 223334455555555666666666666666555554322 2344555544443321 111111
Q ss_pred HHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 318 TEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 318 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+.+...+ +-.+.+|.++.++|.-+++.+.|++.|++++..+ +....+|+.+..-+.....+|.|...|+...
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 1222221 2234555555555555555555555555555533 2245555555555555555555555555542
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048807 398 LRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN 477 (757)
Q Consensus 398 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 477 (757)
.-.+.+-.+|..+.-.|.+.++++.|+-.|+++.+.+.. +.+....+...+.+.|+.++|+++++++...... |
T Consensus 483 ----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 483 ----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred ----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-C
Confidence 111222333444445555555555555555555554322 3444444445555555555555555555544333 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA 542 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 542 (757)
+..---.+..+...+++++|+..++++.+. ++.+...+..+...|.+.|+.+.|+.-|.-+...
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 322222334444445555555555554443 2333344444444555555555555444444443
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.4e-11 Score=119.81 Aligned_cols=470 Identities=14% Similarity=0.061 Sum_probs=307.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH----
Q 048807 243 LVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFT---- 318 (757)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---- 318 (757)
|.-+-+++...+..|+. ---++.+|.-.|+++.|..+...-.-. ..|..+.......+.+..++++|..++.
T Consensus 35 a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~ 110 (611)
T KOG1173|consen 35 ALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHV 110 (611)
T ss_pred HHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 33344445444434433 334778888889999888777654221 2467777778888899999999998887
Q ss_pred HHHHCC---------CCCccch----HHH-------HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 319 EMKEND---------IEPSVVT----FGT-------IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 319 ~m~~~g---------~~p~~~~----~~~-------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
.+.... +.+|..- -+. -...|......++|...|.+.+.. |+..+..+..
T Consensus 111 ~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----------D~~c~Ea~~~ 180 (611)
T KOG1173|consen 111 ETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----------DAKCFEAFEK 180 (611)
T ss_pred hhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----------chhhHHHHHH
Confidence 221100 0111110 000 112334455667777777777543 3333333322
Q ss_pred HHHHc-CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 379 GLCKV-GKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHG 457 (757)
Q Consensus 379 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (757)
.-... =...+-.++|+...- ......++.....+.....-...-++....-.+..-.+..-+........+-+...+
T Consensus 181 lvs~~mlt~~Ee~~ll~~l~~--a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 181 LVSAHMLTAQEEFELLESLDL--AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred HHHHHhcchhHHHHHHhcccH--HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcC
Confidence 21111 111222333332110 000111222222222111000000000000010111123446667777788888999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 048807 458 RINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVS 537 (757)
Q Consensus 458 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (757)
++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=.++.+. .|....+|-++.--|...|+..+|.+.|.
T Consensus 259 ~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 259 RFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred hHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998874 346667777778899999988888887888776 36678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048807 538 KLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT 617 (757)
Q Consensus 538 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 617 (757)
+....+.. =...|-.+...|.-.|..++|+..+..+.+.- +-....+--+.--|.+.+.++-|.++|.+..... +-|
T Consensus 337 Kat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~D 413 (611)
T KOG1173|consen 337 KATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSD 413 (611)
T ss_pred HHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCc
Confidence 87765322 24579999999999999999999998876641 2222233445566888999999999999998753 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc---C-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSS---S-NVS-PNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 692 (757)
+...+-+.-.....+.+.+|..+|+..... . .-. --..+++.|+.+|.+.+++++|+..+++.+.. .+.|..++
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~ 492 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTH 492 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHH
Confidence 778888877777889999999999887631 0 001 13456899999999999999999999999986 35688899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
.+++-.|...|+++.|++.|.+.+ .+.||..+-..++..+..
T Consensus 493 asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 999999999999999999999998 478988666666655443
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.7e-14 Score=145.34 Aligned_cols=260 Identities=19% Similarity=0.213 Sum_probs=66.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRKG-LCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA 526 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 526 (757)
.+...+.+.|++++|.+++.+..... .+.|...|..+.......++++.|...++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 33555555666666666654433332 12233444444444555555666666666555543 1233344444444 455
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 527 GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIG-MTPNSVTYNTLISFLSKSGNFSAARRV 605 (757)
Q Consensus 527 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 605 (757)
+++++|..++....+. .++...+..++..+.+.++++++..+++.+.+.. .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555544333 2334444455555555555555555555544321 123444455555555555555555555
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048807 606 LKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684 (757)
Q Consensus 606 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 684 (757)
+++.++.. | |......++..+...|+.+++..+++...+. .+.|...+..+..+|...|+.++|+..|++.....
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 55555532 3 3444555555555555555555555554441 12233344555555555555555555555555421
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 685 VRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 685 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
+.|+.....+++++...|+.++|.++.+++.
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 2244444555555555555555555555443
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.7e-11 Score=118.87 Aligned_cols=477 Identities=13% Similarity=0.068 Sum_probs=316.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+..-+..+++-+..+.++.-|.-+-+++...+..| ...-.+..++.-.|+++.|..+...-.-. ..|..+..-...
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34445556666667778888888888887776444 44445678888889999998887665433 347777777888
Q ss_pred HHHhcCChhHHHHHHHHH----HhC--CCCC-cccccCCHhH----HHHHH-------HHHHHcCCHHHHHHHHHHHHHh
Q 048807 338 RLCKLYRADEALEVFEKM----IAG--KETA-EISVEPDVII----FNTLI-------DGLCKVGKQEEALGLIEQMRLR 399 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~----~~~--~~~~-~~~~~~~~~~----~~~li-------~~~~~~g~~~~A~~~~~~~~~~ 399 (757)
++.+..++++|..++... ..- .+.. ...+.+|..- -+.-+ ..|....+.++|...+.+..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al-- 168 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL-- 168 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH--
Confidence 899999999999998832 110 0000 0001111111 11111 23334445566666665553
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048807 400 LQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV----TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC 475 (757)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 475 (757)
..|...+..+...-.. ..-.+.+-++.+..... .-+......+.........-++....-.+..-.+..
T Consensus 169 -----~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~ 241 (611)
T KOG1173|consen 169 -----LADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLA 241 (611)
T ss_pred -----hcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhh
Confidence 3455444443322111 11122222222222111 112222222222211111111111111101111233
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 476 ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLI 555 (757)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 555 (757)
.+........+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+-.++.+.- +....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 355666667777888999999999999999875 6677777778889999999999888888888863 44678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 556 SGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVD 635 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 635 (757)
--|...|+.++|.+.|.+....+ +.=...|-.+...|+-.|.-++|+..+..+.+. ++-....+.-+.--|.+.++++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 99999999999999999988764 334568999999999999999999999888764 1112222333455688899999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 048807 636 EAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK--EVRP----NTNTYNAMFKGLRQKNMLDKAF 709 (757)
Q Consensus 636 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~l~~~~~~~g~~~~A~ 709 (757)
.|.++|.+... -.+.|+...+-+.-...+.+.+.+|..+|+..+.. .+.+ -..+++.|+.+|.+.+++++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999876 34456778888888888889999999999998731 1111 2456889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh-chhcc
Q 048807 710 KLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG-YAVSA 754 (757)
Q Consensus 710 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~ 754 (757)
..+++.+.. .+-|..++.+++-.+...|+++.|.+++.+ +..+|
T Consensus 476 ~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 476 DYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999975 455778999999999999999999999977 34444
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=2.7e-11 Score=114.02 Aligned_cols=290 Identities=14% Similarity=0.151 Sum_probs=198.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN---AVTYTILITAFCNVNNFQEA 497 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 497 (757)
+++.++|.++|-+|.+... .+..+.-+|.+.|.+.|..|.|++++..+.+..--+. ..+...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4566777777777777522 2444556677777777777777777777766421111 12334566777778888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 498 IKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI----VCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 498 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
+.+|..+.+.+ .--......|+..|-+..+|++|++.-+++.+.+..+.. ..|-.+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888777653 223445667777888888888888888877776544432 2455666666677888889999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 048807 574 MEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN 653 (757)
Q Consensus 574 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 653 (757)
..+.+ +.....--.+.+.+...|++++|.+.++...+.+..--..+...|..+|...|+.++....+.++.+ .. ++
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~~--~g 281 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-TN--TG 281 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-cc--CC
Confidence 88775 3444455566778888899999999999988876444456778888899999999999999988877 23 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc
Q 048807 654 TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLR---QKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 654 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~ 718 (757)
...-..+...-....-.+.|...+.+-+.. +|+...+..+++.-. ..|...+-...+.+|+..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333444555444455566666666665554 688888888887653 345677777788888653
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=3.8e-10 Score=107.35 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=120.8
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhH
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADE 347 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 347 (757)
-+....++..|+.+++.....+-.....+-..+..++.+.|++++|...|..+...+ .++...+..|.-++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344567777787777766644433223344445567778888888888888877765 4566666667766777888888
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKG 427 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 427 (757)
|..+-.+. +.+......|.+.-.+.|+-++-..+-+.+. ....--.+|.......-.+++|
T Consensus 110 A~~~~~ka-----------~k~pL~~RLlfhlahklndEk~~~~fh~~Lq--------D~~EdqLSLAsvhYmR~HYQeA 170 (557)
T KOG3785|consen 110 AKSIAEKA-----------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ--------DTLEDQLSLASVHYMRMHYQEA 170 (557)
T ss_pred HHHHHhhC-----------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHh--------hhHHHHHhHHHHHHHHHHHHHH
Confidence 88877664 3334444445555566677666665555553 1223334455555556667888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 428 LELFHLMKQEGVTPNVVTLNTL-VDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC 489 (757)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 489 (757)
++++...+.. .|+....|.- .-+|.+..-++-+.+++.-.++. ++.+...-|.......
T Consensus 171 IdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 171 IDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHh
Confidence 8888887765 2344444433 33556666677777777666654 2224444454444333
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.53 E-value=3.4e-09 Score=109.23 Aligned_cols=448 Identities=14% Similarity=0.177 Sum_probs=300.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 242 ELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 242 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 321 (757)
..+++.+.+.+ +++....+.....-.++..|+.++|....+...+.++. +.+.|..+.-.+....++++|++.|..++
T Consensus 25 kgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 25 KGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred hHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44555555555 45666667776777788899999999999999987765 78999999999999999999999999999
Q ss_pred HCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 048807 322 ENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQ 401 (757)
Q Consensus 322 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 401 (757)
..+ +.|...|..+...-.+.|+++-....-...++.. +..-..|..++.++.-.|+...|..+++.....
T Consensus 103 ~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t-- 172 (700)
T KOG1156|consen 103 KIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT-- 172 (700)
T ss_pred hcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 876 5567778877777788899988888888877753 556778999999999999999999999998632
Q ss_pred CCCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048807 402 KGCMPNAVTYNCL------INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC 475 (757)
Q Consensus 402 ~~~~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 475 (757)
....|+...|... .....+.|..++|++.+..-... +.-....-..-...+.+.+++++|..++..++..+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-- 249 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-- 249 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--
Confidence 1134555554433 34456788888888887765543 22133334456778889999999999999999874
Q ss_pred CCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048807 476 ANAVTYT-ILITAFCNVNNFQEAI-KWFDDMSRAGCSADSVVYFTL-ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYN 552 (757)
Q Consensus 476 ~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 552 (757)
||...|. .+..++.+-.+.-++. .+|....+. .|....-..+ ++......-.+....++..+.+.|+++ ++.
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~ 324 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFK 324 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhh
Confidence 4555554 4445554333444444 566555443 1211111111 111111222333445666677777653 233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 553 HLISGFCKKKMLDKAYEVLQEME----DIG----------MTPNSVTY--NTLISFLSKSGNFSAARRVLKKMVKEGLVP 616 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 616 (757)
.+...|-.-.+.+-..++...+. ..| -+|....| -.++..|-+.|+++.|...++..+.. .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 34444433222221112221111 111 14555444 45677888999999999999999975 46
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----
Q 048807 617 TV-VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTN----- 690 (757)
Q Consensus 617 ~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----- 690 (757)
+. ..|..-...+...|++++|..++++..+ .. .+|...-.--+.-..++.+.++|.++.......|. +..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~e-lD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~ 478 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQE-LD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAE 478 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHH
Confidence 54 4566667888999999999999999887 22 35665544666677789999999999988887664 221
Q ss_pred ---HHHH--HHHHHHHcCCHHHHHHHHHHH
Q 048807 691 ---TYNA--MFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 691 ---~~~~--l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.|-. =+.+|.+.|++.+|++=|...
T Consensus 479 mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 479 MQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 2222 244677888888877655444
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.4e-10 Score=112.85 Aligned_cols=286 Identities=13% Similarity=0.128 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 422 GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWF 501 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (757)
|++.+|+++..+-.+.+-. ....|..-+.+--+.|+.+.+-.++.++.+....++..++-+........|+++.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4444444444444443322 122333333444444444444444444444422333344444444444445555554444
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 502 DDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI-------VCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 502 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
+++.+.+ +...........+|.+.|++.+...+...+.+.|.-.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 4444443 333444444445555555555555555555544433332 24555555555555555544555554
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
... ...++..-.+++.-+.++|+.++|.++.++.++.+..|.... .-.+.+-++...-++..+.-.+..+. ++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~--~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPE--DP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCC--Ch
Confidence 433 244556666778888888889999988888888876666222 22345667777767777666663333 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
..+.+|+..|.+.+.|.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|.+..++.+-.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 56888888899999999999999987774 688889999999999999999998888887643
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1e-10 Score=123.96 Aligned_cols=471 Identities=17% Similarity=0.163 Sum_probs=269.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 048807 246 LVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDI 325 (757)
Q Consensus 246 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 325 (757)
++..+...|+.|+.+||.++|.-||..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455677899999999999999999999999999 9999998888888899999999999999888776
Q ss_pred CCccchHHHHHHHHHhcCChhH---HHHHHHHHHhC----CC-----------CCcccccCCHhHHHHHHHHHHHcCCHH
Q 048807 326 EPSVVTFGTIINRLCKLYRADE---ALEVFEKMIAG----KE-----------TAEISVEPDVIIFNTLIDGLCKVGKQE 387 (757)
Q Consensus 326 ~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~li~~~~~~g~~~ 387 (757)
.|-..||+.|..+|...|+... ..+.++.+... |. ....+.-||. ...+....-.|-++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHH
Confidence 5678899999999999998754 33322222221 10 0011112222 22444455566666
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048807 388 EALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS-GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFF 466 (757)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 466 (757)
.+++++..+.. .....|-.+ .++-+... ..+++-..+-+...+ .|+..+|..++..-...|+.+.|..++
T Consensus 157 qllkll~~~Pv--sa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 157 QLLKLLAKVPV--SAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHhhCCc--ccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 66666655531 111111111 12222222 222333332222222 367777777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhH---------------
Q 048807 467 QEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMND--------------- 531 (757)
Q Consensus 467 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~--------------- 531 (757)
.+|.+.|++.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAav 304 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAV 304 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHH
Confidence 777777777666655555544 56666677777777777777777766555544444332111
Q ss_pred ---------HHHHHH------------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC-CCHHHHH
Q 048807 532 ---------ASLVVS------------KLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIG--MT-PNSVTYN 587 (757)
Q Consensus 532 ---------A~~~~~------------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~ 587 (757)
|.+.++ +..-.|+......|...+. ....|+-++..++-..+..-- .. .++..|.
T Consensus 305 rsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~ 383 (1088)
T KOG4318|consen 305 RSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFG 383 (1088)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHH
Confidence 111111 1111122222222322222 223566666666666664321 12 2333454
Q ss_pred HHHHHHHHcCC----------------------HHHHHHHHHHHHhC----------------CCCC-------CHHHHH
Q 048807 588 TLISFLSKSGN----------------------FSAARRVLKKMVKE----------------GLVP-------TVVTYG 622 (757)
Q Consensus 588 ~li~~~~~~g~----------------------~~~A~~~~~~m~~~----------------~~~p-------~~~~~~ 622 (757)
.++.-|.+.-+ ..+..++....... ...| -...-+
T Consensus 384 ~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 384 ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 44444432111 11111111111000 0000 011123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK--EVRPNTNTYNAMFKGLR 700 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~ 700 (757)
.++..++..-+..+++..-++... .-+ + ..|..||+.++...+.+.|..+.++.... .+.-|..-+..+.+.+.
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 334444444444444443333333 111 1 45888999999999999999999888642 12335556788889999
Q ss_pred HcCCHHHHHHHHHHHHHcC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHh
Q 048807 701 QKNMLDKAFKLMDRMIEHA-CHPDY-ISMEILTEWLSEAGQTEKLKKFVQ 748 (757)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 748 (757)
+.+....+..+++++.+.- ..|.. .+.-.+++.....|+.+..++..+
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d 589 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLAD 589 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHH
Confidence 9999999999999887632 23332 556667777788888776665544
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=7.6e-09 Score=106.73 Aligned_cols=459 Identities=13% Similarity=0.136 Sum_probs=307.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
+...+..| ..+++...+...+.+++..+. ...+.....-.+...|+-++|....+..++.+ ..+.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 34445544 568889999999998885433 56666666667788899999999998888765 3477889988888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (757)
..++++|++.|..++..+ +.|...|.-+.-.=.+.|+++.....-.+. ..-.+.....|..++.++.-.
T Consensus 88 dK~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~L----Lql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQL----LQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHhhhhhHHHHHHHHHHHHHH
Confidence 899999999999999876 667888888877778888888777766655 233355678899999999999
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCC
Q 048807 422 GNIEKGLELFHLMKQEG-VTPNVVTLNTLV------DGMCRHGRINSAVEFFQEVTRKGLCANAVT-YTILITAFCNVNN 493 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~ 493 (757)
|+...|..+++...+.. -.|+...+.-.. ....+.|.+++|.+.+...... + .|... --.-...+.+.++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhh
Confidence 99999999999988764 345665554433 3445678888888877665543 1 13222 2344667889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHH-HHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 494 FQEAIKWFDDMSRAGCSADSVVYFTLIS-GLCQAGRMNDAS-LVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVL 571 (757)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (757)
+++|..++..++..+ ||...|.-... ++.+-.+.-++. .+|....+. ++........=++......-.+...+++
T Consensus 235 lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHH
Confidence 999999999999874 66666655544 443344444444 566655543 1111111111111111222334555667
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------CC----------CCCCHHHH--HHHHHHHHhc
Q 048807 572 QEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK--------EG----------LVPTVVTY--GALIHAFCVN 631 (757)
Q Consensus 572 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~----------~~p~~~~~--~~li~~~~~~ 631 (757)
..+.+.|+++ ++..+...|-.-...+ ++++.+. .| -+|....| .-++..|-+.
T Consensus 312 ~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 312 RPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 7778888664 3333443333222111 2222211 10 14454444 4567778899
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 632 GHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFK 710 (757)
Q Consensus 632 g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (757)
|+++.|..+++.... . .|+. ..|..-...+.+.|++++|..++++..+.. .||...-.--+.-..++++.++|.+
T Consensus 385 g~~~~A~~yId~AId--H-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 385 GDYEVALEYIDLAID--H-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred ccHHHHHHHHHHHhc--c-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999887 2 3554 467778899999999999999999999764 4555544455666678999999999
Q ss_pred HHHHHHHcCCCC--C----HHHHHHH--HHHHHhcCCHHHHHHHHhhc
Q 048807 711 LMDRMIEHACHP--D----YISMEIL--TEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 711 ~~~~~~~~g~~p--~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 750 (757)
+.......|... | ...|..+ +.+|.+.|++.+|.+-+..+
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 999887766411 1 1334433 34566777777776655443
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=6.1e-10 Score=108.53 Aligned_cols=292 Identities=13% Similarity=0.093 Sum_probs=232.7
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 048807 383 VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 462 (757)
.|++..|+++..+.. ..+ +.....|..-+.+.-+.|+.+.+-.++.+..+..-.++...+-+........|+++.|
T Consensus 97 eG~~~qAEkl~~rna---e~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNA---EHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhh---hcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 799999999998874 333 3345667777788889999999999999999875566777888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHHHHHHHHHhcCChhHHHHH
Q 048807 463 VEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV-------VYFTLISGLCQAGRMNDASLV 535 (757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~ 535 (757)
..-..++.+.+.. +..+......+|.+.|++.....++.++.+.+.-.+.. +|..+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999988765 77888999999999999999999999999988766553 566666555555555554445
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 048807 536 VSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV 615 (757)
Q Consensus 536 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 615 (757)
++..... .+.++..-.+++.-+.++|+.++|.++..+..+++..|.. ...-.+.+-++.+.-++..++..+.. +
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~ 325 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-P 325 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-C
Confidence 5554443 3446667778888899999999999999999998765552 12234567788888888888877652 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048807 616 PTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPN 688 (757)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 688 (757)
.+...+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.+.+++....-.+|+
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 3567889999999999999999999998776 568999999999999999999999999999875433443
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=7.8e-08 Score=101.49 Aligned_cols=408 Identities=14% Similarity=0.069 Sum_probs=239.5
Q ss_pred CCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 048807 325 IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC 404 (757)
Q Consensus 325 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 404 (757)
+..|...|..+.-++...|+++.+.+.|++.+.. .......|+.+...|...|.-..|..+++.... ....
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-------~~~~~e~w~~~als~saag~~s~Av~ll~~~~~--~~~~ 389 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-------SFGEHERWYQLALSYSAAGSDSKAVNLLRESLK--KSEQ 389 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc--cccC
Confidence 3445666666666667777777777777776543 234456677777777777777777777766531 1111
Q ss_pred CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CChHHHHHHHHH
Q 048807 405 MPNAVTYNCLINGFCK-SGNIEKGLELFHLMKQE--GV--TPNVVTLNTLVDGMCRH-----------GRINSAVEFFQE 468 (757)
Q Consensus 405 ~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~ 468 (757)
++|...+......|.+ .+.++++++.-.++... +. ......|..+.-+|... ....++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 3334444444444443 45666666666665551 11 11233444444444321 112345566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048807 469 VTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI 548 (757)
Q Consensus 469 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 548 (757)
..+.+.. |+.+.--+.--|+..++++.|....++.++.+-..+...|..+.-.+...+++.+|+.+.+...+. ...|.
T Consensus 470 av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~ 547 (799)
T KOG4162|consen 470 AVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNH 547 (799)
T ss_pred HHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhh
Confidence 6655433 222222234446666777777777777776655566777777777777777777777777665543 11122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHH--HHHHHH----HHcCCHHHHHHHHHHHH--------hC
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIG--MTPNSVTYN--TLISFL----SKSGNFSAARRVLKKMV--------KE 612 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~--~li~~~----~~~g~~~~A~~~~~~m~--------~~ 612 (757)
.....-+..-...++.++|......+...- .++-..+.. .+.... .-.++..+|.+...++. ..
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 222233333444666777766655543210 000000000 000000 00011222222111111 00
Q ss_pred C---------C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 613 G---------L--VPT------VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALS 675 (757)
Q Consensus 613 ~---------~--~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 675 (757)
| . .|+ ...|......+.+.+..++|...+.+..+ ..+-....|...+..+...|.+++|.+
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 1 1 122 22345566778888999999988888876 233445578888888889999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 676 LMEEMKVKEVRPNT-NTYNAMFKGLRQKNMLDKAFK--LMDRMIEHACHP-DYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 676 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
.|...... .|+. .+..++..++.+.|+..-|.. ++..+++. +| ++..|..|+..+.+.|+.++|.+.|+-
T Consensus 706 af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 706 AFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999874 5654 577899999999998887877 99999874 55 569999999999999999999888864
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.4e-08 Score=102.06 Aligned_cols=454 Identities=13% Similarity=0.112 Sum_probs=259.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
+=++.+...|++++|.+...+++..++. +...+..-+-++.+.+.|++|+++.+.-... .-+.+-+-.-..+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 3456777888889999888888887643 6677777777888888888888655433211 011111112233445788
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHc
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGFCKS 421 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 421 (757)
..++|+..++.. -+.+..+...-...+.+.|++++|+++|+.+. +...++ ...-..++.+-.
T Consensus 94 k~Dealk~~~~~----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~----kn~~dd~d~~~r~nl~a~~a-- 157 (652)
T KOG2376|consen 94 KLDEALKTLKGL----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLA----KNNSDDQDEERRANLLAVAA-- 157 (652)
T ss_pred cHHHHHHHHhcc----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHH--
Confidence 888888888722 12334466666777888899999999988884 111222 111222221111
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHHCC-------CCCCH-------HHHHHH
Q 048807 422 GNIEKGLELFHLMKQEGVTPNVVTLNT---LVDGMCRHGRINSAVEFFQEVTRKG-------LCANA-------VTYTIL 484 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~-------~~~~~l 484 (757)
+... ..+......| ..+|.. ....+...|++.+|+++++...+.+ -..+. .+--.|
T Consensus 158 -----~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 158 -----ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred -----hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 1111 0122222222 223333 3345567888888888888873321 11111 112235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHhcCChh-HHHHHHHHHHHCC-----------CCCCH
Q 048807 485 ITAFCNVNNFQEAIKWFDDMSRAGCSADSV----VYFTLISGLCQAGRMN-DASLVVSKLKEAG-----------FRPDI 548 (757)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~~~~~g-----------~~~~~ 548 (757)
...+...|+-++|.++|...++.. ++|.. .-|.|+..-....-++ .++..++...... -.-..
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556778899999999999988876 33432 2233333221111111 1222222211110 00011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFL--SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (757)
..=+.++..| .+..+.+.++-...... .|.. .+..++... ++.....+|.+++...-+....-..++...++.
T Consensus 310 ~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 310 YRNNALLALF--TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 1113333333 34455666655544432 3333 333343332 223357788888887776532223456666777
Q ss_pred HHHhcCCHHHHHHHHH--------HhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HH
Q 048807 627 AFCVNGHVDEAMKIFK--------ELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK--EVRPNTN----TY 692 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----~~ 692 (757)
.....|+++.|.+++. .+.+ .+..|-. ...+...+.+.++.+.|..++.+.+.. .-.+... ++
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILE-AKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 7888999999999998 5555 4444544 456677788888777777777776631 0122223 33
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhchhcc
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 754 (757)
.-++..-.++|+-++|..+++++.+. .++|..+...++.+|+.. +.+.|..+-+.++..+
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLK 521 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCcc
Confidence 33334446779999999999999975 466778888999888876 5788888888876443
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=2e-08 Score=105.74 Aligned_cols=443 Identities=14% Similarity=0.049 Sum_probs=270.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc
Q 048807 251 AEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV 330 (757)
Q Consensus 251 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 330 (757)
....+..|..+|..|.-+..++|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++.-....-.|+..
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33345678999999999999999999999999998875433 67899999999999999999999998876653335444
Q ss_pred hHHHHH-HHH-HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc-----------CCHHHHHHHHHHHH
Q 048807 331 TFGTII-NRL-CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV-----------GKQEEALGLIEQMR 397 (757)
Q Consensus 331 ~~~~li-~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~ 397 (757)
+-..++ ..| -+.+..++++..-.+++....... -......|-.+.-+|... ....++++.+++..
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 433333 333 346788888888888876221000 122334444444444432 12345556666653
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048807 398 LRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN 477 (757)
Q Consensus 398 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 477 (757)
. .. +.|......+.--|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....-.. |
T Consensus 472 ~--~d--~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N 546 (799)
T KOG4162|consen 472 Q--FD--PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-N 546 (799)
T ss_pred h--cC--CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-h
Confidence 1 12 22333333344456667777777777777777655556777777777777777777777777766654111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHH
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA--GFRPDIVCYNHLI 555 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li 555 (757)
-.....-+..-..-++.++|+.....++.. |...- ...+.++-....+....+.-. ...-...++..+.
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 111111222233355666666555554431 00000 001111111122222211110 0111122333332
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 556 SGFCKKKMLDKAYEVLQEMEDIGM--TPN------SVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHA 627 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (757)
......+....-... +..... .|+ ...|......+.+.+..++|...+.+..... +.....|......
T Consensus 618 ~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred HHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 222211111000000 111111 122 2245566777888899999998888887652 3356667777778
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 628 FCVNGHVDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCKNNQVELALS--LMEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 628 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
+...|..++|.+.|..... +.|+ +.+..++..++.+.|+..-|.. ++..+.+.+ +-++..|..++..+.+.|+
T Consensus 694 ~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc
Confidence 8888999999999988766 4455 4578899999999998777777 999999864 4578899999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 048807 705 LDKAFKLMDRMIEH 718 (757)
Q Consensus 705 ~~~A~~~~~~~~~~ 718 (757)
.++|.+.|..+.+.
T Consensus 770 ~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 770 SKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999988763
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=3e-09 Score=101.34 Aligned_cols=417 Identities=15% Similarity=0.133 Sum_probs=224.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
+..++.+.|++++|..++..+...+ .++...|..|...+.-.|.+.+|..+-....+ +.-.-..+...-.+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCc
Confidence 5567889999999999999988755 45778888888888888999999987665433 33333444555667888
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH-HHHHHHHcCC
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC-LINGFCKSGN 423 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~ 423 (757)
-++-....+.+... ..---+|.......-.+.+|.+++.++. .. .|+-...|. +.-+|.+..-
T Consensus 137 Ek~~~~fh~~LqD~-----------~EdqLSLAsvhYmR~HYQeAIdvYkrvL---~d--n~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT-----------LEDQLSLASVHYMRMHYQEAIDVYKRVL---QD--NPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHHHHHhhh-----------HHHHHhHHHHHHHHHHHHHHHHHHHHHH---hc--ChhhhhhHHHHHHHHHhcch
Confidence 77777777766432 2334456666666678899999999985 21 334444443 4557788888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHH
Q 048807 424 IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV-----NNFQEAI 498 (757)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~ 498 (757)
++-+.++++-.++. ++.+....|..+.-..+.=.-..|.+-...+.+.+-.. | ..+.-.++. .+-+.|+
T Consensus 201 ydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgAL 274 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGAL 274 (557)
T ss_pred hhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHH
Confidence 89999998887765 33345555555544444322222333333333322110 0 112222222 2334555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHH
Q 048807 499 KWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKK-------KMLDKAYEVL 571 (757)
Q Consensus 499 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------g~~~~A~~~~ 571 (757)
+++-.+.+. -+..-..|+--|.+.+++.+|..+.+++.-. ++.-|-.-.-.+... ..+.-|.+.|
T Consensus 275 qVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 275 QVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred HhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 555544432 1222333444566666666666665554321 222221111112222 2234455555
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 048807 572 QEMEDIGMTPNSV-TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV 650 (757)
Q Consensus 572 ~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 650 (757)
+-.-+.+..-|.. --.++.+.+.-..++++.+..++....--...|...+ .+..+++..|++.+|+++|-++.. ..+
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~-~~i 424 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISG-PEI 424 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcC-hhh
Confidence 4443333322221 1233444444455566666666655544222333333 355666666666666666665544 222
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048807 651 SPNTVIY-NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY-NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 651 ~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 725 (757)
.|..+| ..|..+|.+.++.+-|++++-++.. +.+..+. ..+...|.+.+.+--|-+.|+.+.. ++|++.
T Consensus 425 -kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pE 495 (557)
T KOG3785|consen 425 -KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPE 495 (557)
T ss_pred -hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcc
Confidence 233333 3445566666666666666554432 1222222 3334455666665555555555432 344443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=1.3e-10 Score=128.16 Aligned_cols=216 Identities=13% Similarity=-0.034 Sum_probs=113.7
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGN 423 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (757)
++++|...++++++.+ +.+..++..+...+...|++++|...|++.. ...+.+...|..+...+...|+
T Consensus 319 ~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al----~l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 319 AMIKAKEHAIKATELD-------HNNPQALGLLGLINTIHSEYIVGSLLFKQAN----LLSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred HHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCC
Confidence 3566666666666654 4455566666666666666666666666653 2234445556666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 424 IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDD 503 (757)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (757)
+++|+..+++..+.... +...+..++..+...|++++|...++++.+...+.+...+..+..+|...|+.++|...+++
T Consensus 388 ~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 388 LEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666666666665322 12222233334455666666666666665543222344455566666666666666666666
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 504 MSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAG-FRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI 577 (757)
Q Consensus 504 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (757)
+.... +.+....+.+...|...| ++|...++.+.+.. -.+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 467 ISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 54431 222333444444555555 35555554444321 01111111 33334445665555555 665554
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=3.1e-10 Score=111.29 Aligned_cols=200 Identities=11% Similarity=0.089 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 548 IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHA 627 (757)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (757)
...+..+...|...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445556666666666666666666666553 3345566666666666677777777776666543 2244555666666
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 628 FCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDK 707 (757)
Q Consensus 628 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 707 (757)
+...|++++|.+.+++..+..........+..+...+...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 667777777777777666521122233455666667777777777777777776542 2245566667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 708 AFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 708 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
|.++++++.+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777654 23344555556666666777777777666543
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=2.7e-10 Score=111.69 Aligned_cols=201 Identities=13% Similarity=0.084 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
....+..+...|...|++++|.+.++++.+..+. +...+..+...+...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456667777888888888888888887776533 56677777777777888888888887777654 334455666677
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
.+...|++++|.+.++++++... .+.....+..+...+...|++++|.+.+++.. ...+.+...+..+...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRAL----QIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCcCChHHHHHHHHH
Confidence 77777777777777777765320 12234455666666777777777777777663 2223345566666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048807 418 FCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVT 470 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 470 (757)
+...|++++|.+.+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66777777777777666655 23344455555566666666666666555544
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=3.9e-10 Score=124.44 Aligned_cols=214 Identities=13% Similarity=0.032 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 493 NFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQ 572 (757)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (757)
++++|...+++.++.+ +.+...+..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3556666666665553 34455555555556666666666666666655531 234455556666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 048807 573 EMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP 652 (757)
Q Consensus 573 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 652 (757)
+..+.. +.+...+..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...+.++.. . .|
T Consensus 397 ~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~-~~ 472 (553)
T PRK12370 397 ECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--Q-EI 472 (553)
T ss_pred HHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--c-cc
Confidence 666553 2222222233334445566666666666665442111333455555566666666666666666544 1 22
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 653 N-TVIYNILIDSLCKNNQVELALSLMEEMKVK-EVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 653 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+ ....+.+...|...| ++|...++++.+. ...+....+ +-..+.-.|+-+.+..+ +++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 2 223444444555555 3555555555431 112222222 22233445555555544 55543
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=8.7e-08 Score=93.61 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=163.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 048807 439 VTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFT 518 (757)
Q Consensus 439 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 518 (757)
++-|+.....+...+...|+.++|...|++....++. +..........+.+.|+++....+...+.... .-...-|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 4445666677777777777777777777776654221 11222222333455666666666666655432 122333444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 519 LISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN 598 (757)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 598 (757)
-...+....++..|+.+-++.+..+.. +...|-.-...+...|+.++|.-.|+...... |-+..+|..|+..|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 444455566777777777766665322 44455555566667777777777777766653 4566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALI-HAFC-VNGHVDEAMKIFKELSSSSNVSPNTV-IYNILIDSLCKNNQVELALS 675 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~ 675 (757)
+.+|.-+-+...+. ++.+..+...+. ..+. ...--++|.+++++..+ +.|+-. ..+.+...+...|+.++++.
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 77777666655543 223444444332 2222 22234667777766544 345432 45666667777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 676 LMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 676 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
++++.+. ..||....+.|++.+...+.+++|++.|..++. ++|+.
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 7777765 357777777777777777777777777777764 45544
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.1e-07 Score=92.78 Aligned_cols=400 Identities=14% Similarity=0.065 Sum_probs=179.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCCCCCcccHHH
Q 048807 145 PLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCD-HDRDAFNVLDEMLDRESQFPVNELTGDI 223 (757)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 223 (757)
+.+...-...+.+|-..|+-+.|.....+.++..+.+ --|.|+..+-+.| +-.++.--+.+.+.. .| ....
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p-~inlMla~l~~~g~r~~~~vl~ykevvre----cp---~aL~ 165 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSP-RINLMLARLQHHGSRHKEAVLAYKEVIRE----CP---MALQ 165 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccccch-hHHHHHHHHHhccccccHHHHhhhHHHHh----cc---hHHH
Confidence 3455556667788888888899988888776532222 1233343333333 333444444444331 11 1111
Q ss_pred HHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhC-CCCCCHHHHHHH
Q 048807 224 VFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCR--KGKTDEAWDVLHVLMKF-DAPLEAASCNAL 300 (757)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l 300 (757)
.+.++...+..|. +.-. ..|.....+++..+...-|.+++. .++...|...+-.+... -++.|+.....+
T Consensus 166 ~i~~ll~l~v~g~-----e~~S--~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~l 238 (564)
T KOG1174|consen 166 VIEALLELGVNGN-----EINS--LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMAL 238 (564)
T ss_pred HHHHHHHHhhcch-----hhhh--hhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHH
Confidence 2222222110010 0000 011111223333333333443332 23333333333322221 123345555666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCccch-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH
Q 048807 301 LNALGREGDFKRMNQLFTEMKENDIEPSVVT-FGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG 379 (757)
Q Consensus 301 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (757)
...+...|+.++|...|++....+ |+..+ .......+.+.|+.++-..+...+.... +-...-|..-...
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-------~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-------KYTASHWFVHAQL 309 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-------hcchhhhhhhhhh
Confidence 666666666666666666655432 22211 1122223344555555555555544321 1223333333334
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 048807 380 LCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRI 459 (757)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (757)
+....+++.|+.+-++.. ...+.++..|-.-...+...|+.++|.-.|+..+... +-+...|..|+..|...|++
T Consensus 310 l~~~K~~~rAL~~~eK~I----~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCI----DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhHHHHHHHHHHHh----ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 444555555655555543 1123334444444445555566666666665555432 12455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 048807 460 NSAVEFFQEVTRKGLCANAVTYTILI-TAFCN-VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVS 537 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (757)
.+|.-.-+...+. ++.+..+.+.+. ..+.. -.--++|.+++++.++.. |.-....+.+...+...|..++++.+++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 6655544444332 112333333331 11111 112344555555544432 1112233444444555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 538 KLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI 577 (757)
Q Consensus 538 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (757)
..... .||....+.|.+.+...+.+.+|++.|...+..
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55443 445555555555555555555555555555544
No 71
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.6e-06 Score=92.27 Aligned_cols=541 Identities=13% Similarity=0.120 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHH-----HHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHH
Q 048807 148 INSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNV-----LIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGD 222 (757)
Q Consensus 148 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 222 (757)
..-+..+.+.|.+.|-+..|++.|..+....+. ++.+. -+..|.-.-.++++.+.++.|+..+ ...|.....
T Consensus 606 HyDra~IAqLCEKAGL~qraLehytDl~DIKR~-vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~N--irqNlQi~V 682 (1666)
T KOG0985|consen 606 HYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRV-VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSAN--IRQNLQIVV 682 (1666)
T ss_pred cccHHHHHHHHHhcchHHHHHHhcccHHHHHHH-HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHhhhHHHH
Confidence 334677888899999998888888766432111 11111 1334555567888999999888754 333333222
Q ss_pred HHHHHHHhhhhhccccChHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--
Q 048807 223 IVFYALMRREHVKNSVTDEELVGLVSKFAEH-----------GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFD-- 289 (757)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 289 (757)
-+-..+ .+........++|+..... .+..|+.+.-..|.+-|+.|++.+.+++.++-.--+
T Consensus 683 Qvatky------~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpE 756 (1666)
T KOG0985|consen 683 QVATKY------HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPE 756 (1666)
T ss_pred HHHHHH------HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHH
Confidence 222222 1222335666777765443 245677778888999999999999998876422111
Q ss_pred -------------------------CCCCHHHH------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCc----------
Q 048807 290 -------------------------APLEAASC------NALLNALGREGDFKRMNQLFTEMKENDIEPS---------- 328 (757)
Q Consensus 290 -------------------------~~~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------- 328 (757)
+.+|.+.| -..|..|.+.=+....-.+...++..++.-+
T Consensus 757 rvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~ 836 (1666)
T KOG0985|consen 757 RVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVR 836 (1666)
T ss_pred HHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHh
Confidence 11111111 1123344443333333333333333221111
Q ss_pred -cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHH-HH---HHHH------HH
Q 048807 329 -VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEA-LG---LIEQ------MR 397 (757)
Q Consensus 329 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~---~~~~------~~ 397 (757)
.+...-|..-.-+.+++.--..+++..+..| ..|..++|+|...|...++-.+- ++ .++. ..
T Consensus 837 gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-------~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 837 GQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-------SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCE 909 (1666)
T ss_pred ccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-------CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhc
Confidence 0111223333345556666667777777776 45778888877666544332110 00 0000 00
Q ss_pred Hh--------hcCC------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCH
Q 048807 398 LR--------LQKG------------------------CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVT--PNV 443 (757)
Q Consensus 398 ~~--------~~~~------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~ 443 (757)
.+ ...| ...|...|..++. ..-.--.++.++..+.+++ .|+
T Consensus 910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dP 984 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDP 984 (1666)
T ss_pred ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCCh
Confidence 00 0000 0112222222221 0001123444444443321 133
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHH---------------------------HHHHHHHhcCCH
Q 048807 444 VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC--ANAVTYT---------------------------ILITAFCNVNNF 494 (757)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~---------------------------~li~~~~~~g~~ 494 (757)
......+.++...+-..+-+++++++.-.+-. -+....| .+.......+-+
T Consensus 985 e~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 985 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLY 1064 (1666)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHH
Confidence 34444455555555555555555555432100 0000111 112333344556
Q ss_pred HHHHHHHHHHHHcC---------------------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048807 495 QEAIKWFDDMSRAG---------------------CSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNH 553 (757)
Q Consensus 495 ~~A~~~~~~m~~~~---------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 553 (757)
++|+.+|++..-.+ --..+..|..+..+-.+.|...+|++-|-+. .|+..|..
T Consensus 1065 EEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1065 EEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 77777776532110 0113445667777777777777776655432 25666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (757)
.++...+.|.+++-...+....+..-.|.. -+.|+-+|++.+++.+-.+++. -||+.....+.+-|...|.
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhh
Confidence 777777777777777777666655444443 3456777777777666444331 3566666666666666666
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------------------hCCCCCCH
Q 048807 634 VDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK------------------------VKEVRPNT 689 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------------~~g~~p~~ 689 (757)
++.|.-+|..+. .|..|...+...|++..|...-+++- ..++--..
T Consensus 1210 y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivha 1279 (1666)
T KOG0985|consen 1210 YEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHA 1279 (1666)
T ss_pred hHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEeh
Confidence 666666554332 25555555555565555554433321 11111122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 048807 690 NTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSE 736 (757)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 736 (757)
.-...++.-|...|-++|-+.+++..+ |+..-+ ..|+-|.-.|++
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh
Confidence 234455555666666666666666655 444333 444455444444
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=4.3e-07 Score=96.01 Aligned_cols=347 Identities=15% Similarity=0.148 Sum_probs=186.5
Q ss_pred CHHHHHHHH--HHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHH
Q 048807 147 SINSATLLI--RFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIV 224 (757)
Q Consensus 147 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~ 224 (757)
|..+-..++ +.|...|+.|.|.+...-+.. -.+|..|.+++++..++|-|.-.+-.|.... +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS----~~vW~nmA~McVkT~RLDVAkVClGhm~~aR-g----------- 788 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS----DSVWDNMASMCVKTRRLDVAKVCLGHMKNAR-G----------- 788 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh----hHHHHHHHHHhhhhccccHHHHhhhhhhhhh-h-----------
Confidence 334444443 457778888888776655542 3679999999999999998887777664321 0
Q ss_pred HHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 225 FYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNAL 304 (757)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 304 (757)
.+-+++..+.|- .+-......-...|.+++|+.+|.+..+. ..|=..|
T Consensus 789 -------------------aRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKly 836 (1416)
T KOG3617|consen 789 -------------------ARALRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLY 836 (1416)
T ss_pred -------------------HHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHH
Confidence 001111111111 01111122223456666666666665542 2222345
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHH----------hCCCC---CcccccCCHh
Q 048807 305 GREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMI----------AGKET---AEISVEPDVI 371 (757)
Q Consensus 305 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~~---~~~~~~~~~~ 371 (757)
...|.+++|.++-+.=-+-. =..||.....-+-..++.+.|++.|++.- +.... ....-..|..
T Consensus 837 Qs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~ 913 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDES 913 (1416)
T ss_pred HhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchH
Confidence 55666666666544321111 12344444444455566666666665431 11000 0000112344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 372 IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVD 451 (757)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (757)
.|.-....+...|+.+.|+.++...+ -|.++++..|-+|+.++|-++-++-- |......|.+
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~------------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR 975 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAK------------DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLAR 975 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhh------------hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHH
Confidence 45555556666778888888777664 26667777777888888877765422 5666777788
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-----------hHHHHH
Q 048807 452 GMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV-----------VYFTLI 520 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----------~~~~li 520 (757)
.|...|++.+|...|.++.. +..-|+. |+.+++++-+.-+.-|... .|.+ -....+
T Consensus 976 ~YEn~g~v~~Av~FfTrAqa---------fsnAIRl-cKEnd~~d~L~nlal~s~~---~d~v~aArYyEe~g~~~~~AV 1042 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQA---------FSNAIRL-CKENDMKDRLANLALMSGG---SDLVSAARYYEELGGYAHKAV 1042 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHH---------HHHHHHH-HHhcCHHHHHHHHHhhcCc---hhHHHHHHHHHHcchhhhHHH
Confidence 88888888888888876653 3333443 3334444333222222111 1111 112233
Q ss_pred HHHHhcCChhHHHHHHHH--------HHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 521 SGLCQAGRMNDASLVVSK--------LKEA--GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~--------~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
..|-+.|.+.+|+++--+ ++.. ....|+...+.-.+-++...++++|..++-...
T Consensus 1043 mLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1043 MLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456667777666654211 1111 223456666777777777778888877776543
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=7.5e-08 Score=102.57 Aligned_cols=270 Identities=17% Similarity=0.112 Sum_probs=186.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHCCCCCccchH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG-----DFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
...+.......|.+.|+.++|..++..+++++|. |...|..+..+..-.. +.+...++|+++...- |.....
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~ 113 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAP 113 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccch
Confidence 3445667788899999999999999999999865 6667777777763332 5677788888887752 444443
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC---------
Q 048807 333 GTIINRLCKLYRAD-EALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK--------- 402 (757)
Q Consensus 333 ~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------- 402 (757)
..+.-.+.....+. .+...+..++..| +| .+++.|-..|....+.+-..+++.........
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------vP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~ 184 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKG------VP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDD 184 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcC------Cc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccc
Confidence 33333333322333 3455566666666 33 35666777777666666666666665322111
Q ss_pred --CCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 048807 403 --GCMPNAV--TYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA 478 (757)
Q Consensus 403 --~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 478 (757)
..+|... ++.-+...|...|++++|++..++.+++... .+..|..-.+.+-+.|++.+|.+.++.+...... |-
T Consensus 185 ~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DR 262 (517)
T PF12569_consen 185 EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DR 262 (517)
T ss_pred cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hH
Confidence 1234443 4466678888999999999999999987322 3667888889999999999999999999887554 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh------h--HHHHHHHHHhcCChhHHHHHHHHHHH
Q 048807 479 VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV------V--YFTLISGLCQAGRMNDASLVVSKLKE 541 (757)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~--~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (757)
..-+..+..+.++|++++|.+++....+.+..|... . ......+|.+.|++..|++.|..+.+
T Consensus 263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677777888889999999999998887765432221 1 23445678888888888877766654
No 74
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=2.7e-08 Score=106.05 Aligned_cols=169 Identities=15% Similarity=0.063 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 048807 552 NHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE--GLVPTVVTYGALIHAFC 629 (757)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~ 629 (757)
+.++..+++.-+..++...-++....- -+ ..|..||+-++...+.+.|..+.++.... .+..|..-+..+.+...
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 445555565555555554444333221 11 46888999999999999999999888653 23345566788888899
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 630 VNGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 630 ~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
+.+....+..++.++.+..-..|+. .++--+.+.....|+.+.-.++++-+...|+.-+ .-++....+.++...|
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhh
Confidence 9999999999999988743333432 3455666777788998888888888877765442 2334445566777777
Q ss_pred HHHHHHHHHcCCCCCHHHHH
Q 048807 709 FKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 709 ~~~~~~~~~~g~~p~~~~~~ 728 (757)
.+..+...+. .+|.+....
T Consensus 616 ~ea~e~~~qk-yk~~P~~~e 634 (1088)
T KOG4318|consen 616 QEAPEPEEQK-YKPYPKDLE 634 (1088)
T ss_pred hhcchHHHHH-hcCChHHHH
Confidence 7776665443 444443333
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=7.1e-10 Score=116.22 Aligned_cols=258 Identities=17% Similarity=0.107 Sum_probs=181.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc--------CCCcc-hHHHHHHHHHhcCChhhHHHHHHHHHhccC
Q 048807 142 QNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNN--------LRNTH-VRNVLIDVLLRCDHDRDAFNVLDEMLDRES 212 (757)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 212 (757)
.+.|.-..+...|..+|...|++++|..+|...... .+.+. ..+.+..+|...+++++|..+|.+++..
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-- 270 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-- 270 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--
Confidence 455666677888999999999999999999876543 12222 3567889999999999999999998762
Q ss_pred CCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----
Q 048807 213 QFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF---- 288 (757)
Q Consensus 213 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 288 (757)
...+. |.. .+.-..+++.|...|.+.|++++|...++++.+.
T Consensus 271 ------------~e~~~-----G~~-----------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 271 ------------REEVF-----GED-----------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred ------------HHHhc-----CCC-----------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 11111 111 1223457888888999999999999988887642
Q ss_pred -CC-CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCc----cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 289 -DA-PLEA-ASCNALLNALGREGDFKRMNQLFTEMKEN---DIEPS----VVTFGTIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 289 -~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
+. .+.+ ..++.++..++..+++++|..+++...+. -+.++ ..+++.|...|.+.|++++|.++|+++++.
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 11 1222 35677888899999999999999877653 11122 356889999999999999999999999864
Q ss_pred CCCCcccc-cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 359 KETAEISV-EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL---QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLM 434 (757)
Q Consensus 359 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (757)
........ .-.-..++.|...|.+.++.++|.++|.+...-. ....+.-..+|..|+..|.+.|++++|+++.+..
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 32111111 1224567788888999999999999988764321 1112223456777777777777777777777665
Q ss_pred H
Q 048807 435 K 435 (757)
Q Consensus 435 ~ 435 (757)
.
T Consensus 477 ~ 477 (508)
T KOG1840|consen 477 L 477 (508)
T ss_pred H
Confidence 5
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=9.4e-10 Score=115.31 Aligned_cols=252 Identities=19% Similarity=0.143 Sum_probs=168.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHC---
Q 048807 254 GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF-----DA-PLEAA-SCNALLNALGREGDFKRMNQLFTEMKEN--- 323 (757)
Q Consensus 254 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 323 (757)
+.|.-..+...|..+|...|+++.|+++++..++. |. .|.+. ..+.+...|...+++.+|..+|++++.-
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34444556677999999999999999999998875 11 12333 3455888999999999999999999753
Q ss_pred --C-CCCc-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 324 --D-IEPS-VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI-IFNTLIDGLCKVGKQEEALGLIEQMRL 398 (757)
Q Consensus 324 --g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 398 (757)
| -.|. ..+++.|...|++.|++++|...++.+++.-........|++. .++.++..++..+++++|..++.....
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 1222 3567888889999999999999988876532111111233333 356677888889999999998887644
Q ss_pred hhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 048807 399 RLQKGCMPN----AVTYNCLINGFCKSGNIEKGLELFHLMKQEG----V--TP-NVVTLNTLVDGMCRHGRINSAVEFFQ 467 (757)
Q Consensus 399 ~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (757)
....-..++ ..+++.|...|.+.|++++|.++|+++++.. . .+ .-..++.|...|.+.+++++|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 333222222 3567888888888888888888888776531 1 11 13456667777777777777777776
Q ss_pred HHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 468 EVTRK----GLC--ANAVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 468 ~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
+.... |+. -...+|..|+..|...|++++|+++.+...
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 64432 211 123456666666666777776666666554
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=8.6e-10 Score=103.92 Aligned_cols=234 Identities=11% Similarity=0.048 Sum_probs=163.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 482 TILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKK 561 (757)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 561 (757)
+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..|-..|.+..++..|+.++.+-.+. ++-|+.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45677777788888888777777665 456667777777777777888887777777665 222444445566677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 562 KMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIF 641 (757)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 641 (757)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|++++..|+. +...|+.+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 78888888888777764 455556666666777777888888888888877755 6677777777777777788777777
Q ss_pred HHhhhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048807 642 KELSSSSNVSPNT--VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 642 ~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 719 (757)
++... .-..|+. .+|-.+.......|++.-|.+.|+-.+..+ .-+.+.++.|.-.-.+.|++++|..++..+..
T Consensus 382 ~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s-- 457 (478)
T KOG1129|consen 382 QRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS-- 457 (478)
T ss_pred HHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--
Confidence 77765 2233332 356677777777788888888887777542 23456777777777777888888888777764
Q ss_pred CCCCH
Q 048807 720 CHPDY 724 (757)
Q Consensus 720 ~~p~~ 724 (757)
+.|+.
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 35554
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.29 E-value=8.5e-08 Score=103.54 Aligned_cols=474 Identities=11% Similarity=0.017 Sum_probs=223.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc-chHHHHHHHHHhcC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV-VTFGTIINRLCKLY 343 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g 343 (757)
+.-.|.+.++...|+.-|+...+.+|. |...|..++.+|.+.|.+..|.++|.+..... |+. ..---.....|..|
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhh
Confidence 445677888888999999998888765 88899999999999999999999998887753 332 22222333557788
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHh----hcCCCCCCHHHHHHHHHHHH
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLR----LQKGCMPNAVTYNCLINGFC 419 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~li~~~~ 419 (757)
.+.+|+..+..++........+-..-..++-.+...+.-.|-..+|.+.++..... .......+...|-.+.++|.
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 99999988888775321110001111223333333333344444444444432210 01111223333333322221
Q ss_pred HcCCHH------HHHHHH-HHHHhCCCC--------------------CCHHHHHHHHHHHHH----c----CChHHHHH
Q 048807 420 KSGNIE------KGLELF-HLMKQEGVT--------------------PNVVTLNTLVDGMCR----H----GRINSAVE 464 (757)
Q Consensus 420 ~~g~~~------~A~~~~-~~m~~~g~~--------------------p~~~~~~~li~~~~~----~----g~~~~A~~ 464 (757)
-.-..+ .-..+| .+....+.- .+..+|..++..|.+ . .+...|..
T Consensus 725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 100000 000000 011111111 122333333333332 1 11224555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048807 465 FFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGF 544 (757)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 544 (757)
.+.+.++..- .+...|+.|.-. ...|++.-|.-.|-+-.... +....+|..+.-.+.+..+++.|...|...+...
T Consensus 805 c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd- 880 (1238)
T KOG1127|consen 805 CCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD- 880 (1238)
T ss_pred HHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-
Confidence 5555554322 245556555443 33345555554444433322 3345556666666666667777777776666543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------
Q 048807 545 RPDIVCYNHLISGFCKKKMLDKAYEVLQEM--E--DIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE-------- 612 (757)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------- 612 (757)
+.+...|..........|+.-++..+|..- . ..|-.++..-|-.-.......|+.++-+...+++...
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 224555555555555566666666666541 1 1121233333322223334445444433333222111
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 613 -GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYN----ILIDSLCKNNQVELALSLMEEMKVKEVRP 687 (757)
Q Consensus 613 -~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p 687 (757)
+.+.+...|........+.+.++.|.....+...-....-+...|+ .+...++..|+++.|..-+...-. ..
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---ev 1037 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EV 1037 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hH
Confidence 2233445566555555666666666555554332111112333343 233344445555544433322111 01
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 688 NTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH-ACHPDY-ISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
+..+-..-+. ..-.|+++++.+.|++++.- .-..|. +....++......+..+.|+..+-+
T Consensus 1038 dEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1038 DEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred HHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 1111111111 13356777888888877642 112232 2233444444555666666665544
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.28 E-value=6.4e-08 Score=100.64 Aligned_cols=192 Identities=14% Similarity=0.218 Sum_probs=92.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 486 TAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLD 565 (757)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 565 (757)
.+-....++.+|+.+++.+.... .-...|..+...|...|+++.|.++|-+.- .++-.|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 33344455556666555554432 122234445555566666666665554321 2344555566666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 566 KAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 566 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-..- .|+. .|.+|-+.|..+..+++.++..
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 6655544433 112223334444444455556666555553332 1332 2445556666655555554322
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 646 SSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLM 712 (757)
Q Consensus 646 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (757)
. .--..|-..+..-|-..|+++.|.+.|-+..+ |.+-+..|..++.|++|.++-
T Consensus 878 ~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 G----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred h----hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 1 00112334445555556666666655544332 344445555566666665543
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2.8e-10 Score=107.11 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=62.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 414 LINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
+.+.+-..++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++++.|+. ++..|+.+.-+|.-.++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 3333334444444444444443331 113333333333333444444444444444444433 33344444434444444
Q ss_pred HHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 494 FQEAIKWFDDMSRAGCSAD--SVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVL 571 (757)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (757)
+|-++.-|++.+..-..|+ ..+|..+.......|++..|.+-|+-.+..+. .....+|.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHH
Confidence 4444444444333211111 22333444444444444444444444433321 12334444444444444444444444
Q ss_pred HHHH
Q 048807 572 QEME 575 (757)
Q Consensus 572 ~~~~ 575 (757)
+...
T Consensus 453 ~~A~ 456 (478)
T KOG1129|consen 453 NAAK 456 (478)
T ss_pred HHhh
Confidence 4443
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.28 E-value=1.8e-07 Score=101.05 Aligned_cols=571 Identities=10% Similarity=-0.025 Sum_probs=327.2
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc-CCCcchHHHHHHHHHhcCChhhHHHHHHHH
Q 048807 129 PESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNN-LRNTHVRNVLIDVLLRCDHDRDAFNVLDEM 207 (757)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 207 (757)
.+.++..|-+..+.. +.-..+|..|...|...-+...|.++|+++-+. ..+...+-...+.|++...++.|....-..
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 444555444444432 333457888888888877888888899888764 334567888888999988888888873333
Q ss_pred HhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048807 208 LDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMK 287 (757)
Q Consensus 208 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 287 (757)
-+.++. ........-+.-...+..+...++..++...+.. |.|...|..|+.+|.++|++..|.++|.++..
T Consensus 553 ~qka~a-------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKAPA-------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhchH-------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 222110 0000111111101122333445555555555443 56888999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHh----
Q 048807 288 FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN------DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIA---- 357 (757)
Q Consensus 288 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 357 (757)
.+|. +...---.....+..|.+++|...+...... +..--..++......+...|-...|...+++.++
T Consensus 625 LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 625 LRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred cCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 7544 3333333445567889999999998887643 1111123333333334444444444444444332
Q ss_pred ---CCCCCcccccCCHhHHHHHHHHHH-----------------------HcCCH--HH----HHHHHHHHHHhhcCCCC
Q 048807 358 ---GKETAEISVEPDVIIFNTLIDGLC-----------------------KVGKQ--EE----ALGLIEQMRLRLQKGCM 405 (757)
Q Consensus 358 ---~~~~~~~~~~~~~~~~~~li~~~~-----------------------~~g~~--~~----A~~~~~~~~~~~~~~~~ 405 (757)
.. ...+...|..+.+++. ..+.. .+ +.+.+-. .-...
T Consensus 704 ~l~h~------~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~-----hlsl~ 772 (1238)
T KOG1127|consen 704 SLIHS------LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA-----HLSLA 772 (1238)
T ss_pred HHHHh------hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH-----HHHHh
Confidence 21 1122223322222211 11111 00 0000000 00011
Q ss_pred CCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048807 406 PNAVTYNCLINGFCK--------SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN 477 (757)
Q Consensus 406 ~~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 477 (757)
.+..+|..++..|.+ ..+...|+..+.+.++..- -+..+|+.|.-. ...|.+.-|...|-+...... ..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TC 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cc
Confidence 234556666665554 1233577888888776532 267778877655 555777777776666555432 36
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHHH
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKE----AGFRPDIVCYNH 553 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~~~ 553 (757)
..+|..+...+.+..+++-|...|....... |.+...|-.........|+.-++..+|..-.+ .|-.++..-|..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 6788888888999999999999999887664 56777887777777788888888888876222 233344444444
Q ss_pred HHHHHHhcCCHHHHHH----------HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHH
Q 048807 554 LISGFCKKKMLDKAYE----------VLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE-GLVPTVVTYG 622 (757)
Q Consensus 554 li~~~~~~g~~~~A~~----------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~ 622 (757)
........|+.++-+. .+++.... .+.+...|.......-+.+.++.|.+...+...- ...-|...|+
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqyn 1007 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYN 1007 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4444445555544333 33333333 3566778888888888888888888777765421 0123444455
Q ss_pred H----HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-HHHHHHH
Q 048807 623 A----LIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK-EVRPNT-NTYNAMF 696 (757)
Q Consensus 623 ~----li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~~~~~l~ 696 (757)
. ....++..|.++.|...+..... ..+..+-..-+.. .-.++++++.+.|+++..- .-..+. +....++
T Consensus 1008 vak~~~gRL~lslgefe~A~~a~~~~~~----evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1008 VAKPDAGRLELSLGEFESAKKASWKEWM----EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVA 1082 (1238)
T ss_pred hhhhhhhhhhhhhcchhhHhhhhcccch----hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 3 23344556666666554433221 0122222222222 3357889999999988752 122333 3344555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 697 KGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
.+....+.-+.|...+-+.... -+|+..+...|.
T Consensus 1083 ~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~ 1116 (1238)
T KOG1127|consen 1083 VCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLP 1116 (1238)
T ss_pred HHHhhcccchHHHHHHHHHHHh-CccchhhHHHHH
Confidence 6667777888888777666653 345554444443
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.25 E-value=9.6e-07 Score=92.20 Aligned_cols=194 Identities=14% Similarity=0.195 Sum_probs=117.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048807 450 VDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRM 529 (757)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 529 (757)
+.+......+.+|+.+++.+..+.. -...|..+.+-|+..|+++.|.++|-+.- .++-.|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344455666677777766665532 22345556677777777777777775432 244556677777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (757)
.+|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-.+- .|+. -|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 77777665543 223345556666666667777777777664332 3443 356677777777776666554
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 610 VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLME 678 (757)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 678 (757)
... .-..|...+..-|...|++..|...|-+..+ |.+.+++|...+-|++|.++-+
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh
Confidence 321 1234455566667777777777776655443 5566677777777777766543
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.7e-06 Score=88.82 Aligned_cols=446 Identities=14% Similarity=0.100 Sum_probs=259.5
Q ss_pred ccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHH--HHcCCh
Q 048807 235 KNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNAL--LNAL--GREGDF 310 (757)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~~g~~ 310 (757)
+.....++|+....++...+ +.|...+..=+.++.+.+++++|+.+.+.-.. ..+++.. =.+| .+.+..
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred ccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHcccH
Confidence 44556688888888888776 66777777778889999999999965443221 1222322 3444 478999
Q ss_pred hHHHHHHHHHHHCCCCCc-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHH
Q 048807 311 KRMNQLFTEMKENDIEPS-VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEA 389 (757)
Q Consensus 311 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 389 (757)
++|+..+. |..++ ..+...-...+.+.|++++|+.+|+.+.+.+. -..|...-..++..- ..-.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-----dd~d~~~r~nl~a~~----a~l~~ 161 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-----DDQDEERRANLLAVA----AALQV 161 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHH----HhhhH
Confidence 99999988 33333 33555566788899999999999999988761 111222222222111 11111
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCC------CCH-HHHHHHHHHHHH
Q 048807 390 LGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE-------GVT------PNV-VTLNTLVDGMCR 455 (757)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~------p~~-~~~~~li~~~~~ 455 (757)
- +.+... .....+-..+......+...|++.+|+++++...+. +-. -.. ..-..|...+-.
T Consensus 162 ~-~~q~v~----~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-LLQSVP----EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-HHHhcc----CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 222221 111112223334456677899999999999988321 111 011 112335556778
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHHcCC----------CCCHhhHH-HH
Q 048807 456 HGRINSAVEFFQEVTRKGLCANAV----TYTILITAFCNVNNFQ-EAIKWFDDMSRAGC----------SADSVVYF-TL 519 (757)
Q Consensus 456 ~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~----------~~~~~~~~-~l 519 (757)
.|+-++|..++..+++.... |.. .-|.|+.+-....-++ .++..++....... ....+..| .+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988654 432 2333332211111111 22222222211100 00111111 12
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 520 ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC-KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN 598 (757)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 598 (757)
+.. ..+..+.+.++-..... ..|....=+.+..++. +...+.+|.+++...-+........+.-.++......|+
T Consensus 316 L~l--~tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 316 LAL--FTNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHH--HhhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 222 23334444444433322 2333332233333332 233577888888887776422234566677788889999
Q ss_pred HHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----CCCCCHHHHHHHHHHHH
Q 048807 599 FSAARRVLK--------KMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSS-----NVSPNTVIYNILIDSLC 665 (757)
Q Consensus 599 ~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~~~~~~~li~~~~ 665 (757)
++.|.+++. .+.+.+..|-.+ .++...+.+.++.+.|..++.+...-. +-..-..++.-++..-.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999999 666655555544 456666777777666666666554310 11111223444455556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 666 KNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
+.|+.++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-.++
T Consensus 470 r~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 7899999999999999853 67888999999999876 677887766554
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=1.3e-07 Score=100.71 Aligned_cols=258 Identities=15% Similarity=0.151 Sum_probs=120.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048807 377 IDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRH 456 (757)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 456 (757)
+..+...|++++|++.++.- ...+.............+.+.|+.++|..++..+++++.. |..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~----~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKN----EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhh----hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhh
Confidence 34556677777777777664 2333334445555666677777777777777777776422 333344444443222
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 048807 457 -----GRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQ-EAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMN 530 (757)
Q Consensus 457 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (757)
...+...++|+++...-+. ......+.-.+.....+. .+...+..++..|+|+ +++.+-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 2345555666665554322 212211211111111222 2334445555555332 3444444444333333
Q ss_pred HHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 531 DASLVVSKLKEA----G----------FRPDIV--CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLS 594 (757)
Q Consensus 531 ~A~~~~~~~~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 594 (757)
-...++...... + -.|... ++..+...|...|++++|++.+++.+++. |..+..|..-...|-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 333333333221 0 012221 22334444555555555555555555542 222344444455555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 595 KSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
+.|++++|.+.++........ |...-+-.+..+.+.|++++|.+++....+
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 555555555555555544321 344444444445555555555555555444
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=1.8e-08 Score=91.09 Aligned_cols=200 Identities=15% Similarity=0.074 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
+...|.-.|...|+...|..-++++++.++. +..+|..+...|.+.|+.+.|.+.|++.+... +.+-...|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4566788899999999999999999998765 78899999999999999999999999999875 446677888899999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
..|++++|...|++.+..-. ...-..+|..+.-+..+.|+.+.|.+.|++.. .-.+....+...+.....+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL----~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 115 AQGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRAL----ELDPQFPPALLELARLHYK 185 (250)
T ss_pred hCCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHH----HhCcCCChHHHHHHHHHHh
Confidence 99999999999999886431 33345678888888889999999999999874 3334456677888888899
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
.|++-.|...++.....+. ++..+.-..|..--..|+-+.+.++=.++.+.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 186 AGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred cccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999998888765 78888888888888888888887766666554
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=1.2e-08 Score=92.25 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
...|.-.|.+.|+...|.+-+++.++.+ |.+..+|..+...|.+.|+.+.|.+.|++.++.. +-+..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3444555666666666666666666654 4445566666666666666666666666666543 1244555555555666
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 631 NGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFK 710 (757)
Q Consensus 631 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (757)
+|++++|...|++........--..+|..++-+..++|+.+.|.+.|++.++.. +-...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 666666666666665532222233456666666666666666666666666542 2233445555566666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 711 LMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 711 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
+++.....+ .+...+.-..+..-...|+.+.+.++=.+
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 666665543 25555555455555555666555554433
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1.6e-08 Score=102.09 Aligned_cols=215 Identities=13% Similarity=-0.002 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 048807 241 EELVGLVSKFAEHGV---FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLF 317 (757)
Q Consensus 241 ~~~~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 317 (757)
+.++.-+.+++.... ......|..+...|.+.|+.++|...|+++.+.++. +...|+.+...+...|++++|.+.|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444455555554321 122455777888888889999999888888887754 7888888888888889999999888
Q ss_pred HHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 318 TEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 318 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
++.++.. +.+..+|..+...+...|++++|++.|++.++.+ +.+. ........+...++.++|.+.|.+..
T Consensus 122 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-------P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 122 DSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-------PNDP-YRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCH-HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888764 3345677778888888888899988888888754 2232 12222223345677888888886653
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048807 398 LRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE---GV--T-PNVVTLNTLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 398 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
....++...| . ......|+..++ +.+..+.+. .. . ....+|..+...+.+.|++++|...|+++.+
T Consensus 193 ----~~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 193 ----EKLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred ----hhCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112222222 2 222334444333 244444321 10 0 1234566777777777777777777777776
Q ss_pred CC
Q 048807 472 KG 473 (757)
Q Consensus 472 ~~ 473 (757)
.+
T Consensus 265 ~~ 266 (296)
T PRK11189 265 NN 266 (296)
T ss_pred hC
Confidence 54
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=2.7e-08 Score=100.48 Aligned_cols=226 Identities=13% Similarity=0.038 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048807 492 NNFQEAIKWFDDMSRAGC-SA--DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAY 568 (757)
Q Consensus 492 g~~~~A~~~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 568 (757)
+..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 345555666655554321 11 123466666667777777777777777766532 25667777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 048807 569 EVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSS 648 (757)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 648 (757)
..|++..+.. +.+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...|.+...
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 7777777664 3455666777777777777777777777777643 3322111112223445677777777765443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048807 649 NVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK---E--VR-PNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHP 722 (757)
Q Consensus 649 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 722 (757)
...|+...+ . ......|+..++ +.++.+.+. . +. .....|..++..+.+.|++++|+..|++.++.. +|
T Consensus 194 ~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 194 KLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred hCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 122332221 1 222234444333 233443321 0 01 123567778888888888888888888887642 34
Q ss_pred CHHHHH
Q 048807 723 DYISME 728 (757)
Q Consensus 723 ~~~~~~ 728 (757)
|.+-+.
T Consensus 269 ~~~e~~ 274 (296)
T PRK11189 269 NFVEHR 274 (296)
T ss_pred hHHHHH
Confidence 554443
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=5.5e-11 Score=83.58 Aligned_cols=49 Identities=33% Similarity=0.653 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4566666666666666666666666666666666666666666666655
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=9.8e-06 Score=86.11 Aligned_cols=209 Identities=10% Similarity=0.051 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc-----------CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCC
Q 048807 147 SINSATLLIRFFGKVSMYDYSLLVYNELDNN-----------LRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFP 215 (757)
Q Consensus 147 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 215 (757)
+..+|..+.++|.+..++|-|..++-.|... .++ ..--...-.-...|.+++|+.+|++-.+-|
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 5678999999999999999997666544320 111 111122333357788899999988875532
Q ss_pred CCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----------
Q 048807 216 VNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVL---------- 285 (757)
Q Consensus 216 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---------- 285 (757)
+++.+... .+...+|+++-+.--+ +. =..||.....-+-..++.+.|++.|++.
T Consensus 831 --------LlNKlyQs-----~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 831 --------LLNKLYQS-----QGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred --------HHHHHHHh-----cccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 23333322 1222444443321110 11 1235555666666777777777777642
Q ss_pred HhCCC---------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 286 MKFDA---------PLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMI 356 (757)
Q Consensus 286 ~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 356 (757)
++.++ ..|...|..-...+-..|+.+.|+.+|..... |-+++...|-.|+.++|-++-++
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-- 963 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-- 963 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh--
Confidence 22111 11333444444445556666666666665443 44556666667777777766554
Q ss_pred hCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 357 AGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..|..+...|.+.|...|++.+|..+|.+.+
T Consensus 964 ----------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 964 ----------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2356666777777887888888877777664
No 91
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.1e-10 Score=82.03 Aligned_cols=50 Identities=48% Similarity=1.042 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 406 PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.9e-07 Score=93.51 Aligned_cols=424 Identities=14% Similarity=0.040 Sum_probs=257.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc-cchHHHHHHHHHhcC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPS-VVTFGTIINRLCKLY 343 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 343 (757)
=.++.+..|+++.|+..|-+.+..++. |.+.|..=..+|...|+|++|++=-.+-++. .|+ ...|.....++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 456778889999999999999998876 8899999999999999999998877766664 455 456888888888899
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHH-HHHHHHHHHhhcCCCCCCHHHHHHHH-----HH
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEA-LGLIEQMRLRLQKGCMPNAVTYNCLI-----NG 417 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~~~li-----~~ 417 (757)
++++|+.-|.+-++.+ +.|...++.+..++ ..+.+ -+.| .+...|..+. +.
T Consensus 85 ~~~eA~~ay~~GL~~d-------~~n~~L~~gl~~a~----~~~~~~~~~~------------~~p~~~~~l~~~p~t~~ 141 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-------PSNKQLKTGLAQAY----LEDYAADQLF------------TKPYFHEKLANLPLTNY 141 (539)
T ss_pred cHHHHHHHHHHHhhcC-------CchHHHHHhHHHhh----hHHHHhhhhc------------cCcHHHHHhhcChhhhh
Confidence 9999999999998875 66777888888777 11111 1111 1222222221 11
Q ss_pred HHHcCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH-HCCCCC------------------
Q 048807 418 FCKSGNIEKGLELFHLMKQE-GVTP-NVVTLNTLVDGMCRHGRINSAVEFFQEVT-RKGLCA------------------ 476 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~------------------ 476 (757)
+...-.+..-++.+..-... +... |.....++... ...+.. ....-..+. ..+..|
T Consensus 142 ~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l-~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 142 SLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQL-KGVDEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred hhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHH-hcCccc--cccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 11111121111111110000 0000 11111111110 000000 000000000 000000
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--
Q 048807 477 ----NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVC-- 550 (757)
Q Consensus 477 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-- 550 (757)
-..-...+.++..+..+++.|++.+....+.. .+..-++....+|...|.+.+....-....+.|.. ...-
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~k 295 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYK 295 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHH
Confidence 11123456777778888999999998888764 45556677777888888888877777766665532 1112
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 048807 551 -----YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV-VTYGAL 624 (757)
Q Consensus 551 -----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 624 (757)
+..+..+|.+.++++.|...|.+.+.....|+. ..+....+++....+...-.+ |.. .-.-.-
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~k 364 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREK 364 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHH
Confidence 223445677778889999999887765433332 223344555555555544432 332 112222
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 625 IHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
...+.+.|++..|++.+.++++ ..+.|...|....-+|.+.|.+..|+.-.+..++.. ++....|..=+.++....+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHH
Confidence 5667788899999999988887 235677788888888899999988888888877752 2334456555666677778
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 705 LDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 705 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
+++|.+.|++.++. .|+..-+..-+.-|..
T Consensus 442 ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 YDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888888888864 5666444433344443
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=3.8e-05 Score=83.57 Aligned_cols=289 Identities=16% Similarity=0.182 Sum_probs=168.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
...+...+-+++|..+|++.. .+....+.|+. ..+.++.|.+.-++.. .+.+|+.+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 344455566677777776543 24445555554 2455666655544432 456788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
.+|++-|-+. .|+..|..++....+.|.+++-.+++....+..-.|.+. ..|+-+|++.+++.+-.+++.
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--
Confidence 8888776543 277788888888888888888888887777765555444 467778888887776655442
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh----------
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKEL---------- 644 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---------- 644 (757)
-|+......+.+-|...|.++.|.-+|... ..|..|...+...|++..|...-++.
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 345555555555555555555555554322 22333334444444444433322221
Q ss_pred --------------hhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 645 --------------SSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFK 710 (757)
Q Consensus 645 --------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (757)
-. .++.-...-..-++.-|...|-+++-+.+++..+... +..-..|..|.-.|.+- +.++-.+
T Consensus 1257 faCvd~~EFrlAQiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred HHHhchhhhhHHHhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 11 1122233345667788888888888888877765321 12233555565555443 3444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 711 LMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 711 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
.++-.-.+ .| .--+++++-.+..|.|..-++.++
T Consensus 1334 Hl~LFwsR---vN---ipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1334 HLKLFWSR---VN---IPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHh---cc---hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333211 11 224678888887888777666554
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2.7e-07 Score=86.28 Aligned_cols=315 Identities=15% Similarity=0.142 Sum_probs=161.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH-
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT- 375 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~- 375 (757)
+++.+.-+.+..+++.|++++..-.++. +.+......+..+|....++..|...++++-.. .|...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence 4555555666677777777777666653 235555666666777777777777777776553 344443332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN--GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGM 453 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (757)
-...+.+.+.+.+|+++...|. . .++...-..-+. .....+++..+..+.++....| +..+.+......
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~----D--~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLL----D--NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhc----C--CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 2445566777777777777663 1 122211111111 2234566666666666655332 344445555555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH----HHHHHHHHhcCCh
Q 048807 454 CRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVY----FTLISGLCQAGRM 529 (757)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~g~~ 529 (757)
.+.|++++|.+-|+...+-+--.....||.-+ +..+.|+++.|++...++++.|+...+..- +-.++ .+.+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsv 229 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSV 229 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcc
Confidence 66777777777777776654333445555433 344556777777777777776654221100 00000 0000
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI-GMTPNSVTYNTLISFLSKSGNFSAARRVLKK 608 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (757)
.....+.... -+..+|.-...+.+.|+.+.|.+.+..|.-+ ....|++|...+.-.-. .+++.+..+-+.-
T Consensus 230 gNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 230 GNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQF 301 (459)
T ss_pred cchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHH
Confidence 0000000000 0112333444455666666666666665421 11335555544432211 2334444444444
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 609 MVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKE 643 (757)
Q Consensus 609 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 643 (757)
++..+. -...||..++-.||+..-++.|-.++.+
T Consensus 302 LL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 444322 2345666666666666666666666544
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=8.2e-07 Score=93.27 Aligned_cols=199 Identities=11% Similarity=0.075 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT---FGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
...|..+...+...|+.+.+.+.+.+..+.. +++... .......+...|++++|.+.++++++.. |.|.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~ 77 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-------PRDL 77 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcH
Confidence 3445555555555555555555555444332 111111 1111223445666666666666666543 3333
Q ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 371 IIFNTLIDGLCK----VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTL 446 (757)
Q Consensus 371 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 446 (757)
..+.. ...+.. .+..+.+.+.+... ....+........+...+...|++++|.+.+++..+.. +.+...+
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~ 151 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAV 151 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHH
Confidence 33332 222222 23333333333321 22222333444455566666777777777777776653 2245556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 447 NTLVDGMCRHGRINSAVEFFQEVTRKGLC-ANA--VTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
..+...+...|++++|...+++..+.... ++. ..|..+...+...|++++|..++++...
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66666777777777777777766654321 121 2344566667777777777777777643
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=1.1e-06 Score=92.45 Aligned_cols=202 Identities=10% Similarity=0.021 Sum_probs=100.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048807 369 DVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNT 448 (757)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 448 (757)
....|..+...+...|+.+++.+.+........... ............+...|++++|.+++++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 355666666667677777776666655432111111 111222223344556777777777777776652 223333332
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048807 449 LVDGMCR----HGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLC 524 (757)
Q Consensus 449 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 524 (757)
...+.. .+..+.+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 222222 233333333333311 1111122333344455666666666666666666553 334455555666666
Q ss_pred hcCChhHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 525 QAGRMNDASLVVSKLKEAGFR-PDI--VCYNHLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~g~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
..|++++|...+++....... ++. ..|..+...+...|++++|..++++..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666666666666665543211 121 223345555666666666666666554
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.3e-06 Score=85.24 Aligned_cols=407 Identities=14% Similarity=0.091 Sum_probs=252.6
Q ss_pred ccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 237 SVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 237 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
.+..+.++.+|-..+... ++|.+.|+.-..+|.+.|++++|++=-.+..+..+. -...|+-...++.-.|+|++|..-
T Consensus 15 ~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHHHHHHH
Confidence 456688888988888775 559999999999999999999999888887776544 367899999999999999999999
Q ss_pred HHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHH-----HHHHHcCCHHHHHH
Q 048807 317 FTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLI-----DGLCKVGKQEEALG 391 (757)
Q Consensus 317 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~ 391 (757)
|.+-++.. +.|...++.+..++. .+.+. +. ...++..|..+. +.+...-.+..-++
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~---------~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQ---------LFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hh---------hccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999875 446666777776661 11111 11 111222222222 11211111211111
Q ss_pred HHHHHHHhhcCCCCCCHHHHH---HHHHHHHHcCCHHHH-HHHHHHHH-hCCCCC----------------------CHH
Q 048807 392 LIEQMRLRLQKGCMPNAVTYN---CLINGFCKSGNIEKG-LELFHLMK-QEGVTP----------------------NVV 444 (757)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A-~~~~~~m~-~~g~~p----------------------~~~ 444 (757)
.+.+- +-+...|. .++.+.......+.- ...-..+. ..+..| -..
T Consensus 154 ~~~~~--------p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~ 225 (539)
T KOG0548|consen 154 IIQKN--------PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAH 225 (539)
T ss_pred HhhcC--------cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhh
Confidence 11111 11111110 011111110000000 00000000 000011 112
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHH
Q 048807 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV-------VYF 517 (757)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~ 517 (757)
-...+.++..+..+++.|.+-+...++.. -+..-++....+|...|.+.++...-.+..+.|-. ... .+.
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 34567778888889999999999988875 36666677778899999988888877776665421 111 223
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHc
Q 048807 518 TLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV-TYNTLISFLSKS 596 (757)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~ 596 (757)
.+..+|.+.++++.|+..|.+.......|+. ..+....+++........-.+ |+.. -...-...+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhc
Confidence 3444677788899999999987765444332 223344555555555444332 2221 122225667788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048807 597 GNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCKNNQVELALS 675 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 675 (757)
|++..|+..|.++++.. +-|...|....-+|.+.|.+..|++-.+...+ +.|+ ...|.--+.++....++++|++
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie---L~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE---LDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 44788899999999999999999998888877 2344 3355555666666778999999
Q ss_pred HHHHHHhCCCCCCHHHH
Q 048807 676 LMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 676 ~~~~m~~~g~~p~~~~~ 692 (757)
.|++.++. .|+..-+
T Consensus 448 ay~eale~--dp~~~e~ 462 (539)
T KOG0548|consen 448 AYQEALEL--DPSNAEA 462 (539)
T ss_pred HHHHHHhc--CchhHHH
Confidence 99998875 3554433
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=3.4e-07 Score=85.63 Aligned_cols=417 Identities=16% Similarity=0.117 Sum_probs=233.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHH-HHHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGT-IINRLC 340 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~ 340 (757)
+++.+..+.+..++++|++++..-.++.+. +......+..+|....++..|...|+++-.. .|...-|.- -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 555666677889999999999998887654 7788889999999999999999999999875 455444432 345677
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIF--NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+.+.+.+|+++...|... ++...- ..-.......+++..+..++++.. . ..+..+.+...-..
T Consensus 90 ~A~i~ADALrV~~~~~D~---------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp---~---en~Ad~~in~gCll 154 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP---S---ENEADGQINLGCLL 154 (459)
T ss_pred HhcccHHHHHHHHHhcCC---------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc---C---CCccchhccchhee
Confidence 899999999999988542 222211 111223345788888888888873 1 23455666666677
Q ss_pred HHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCC
Q 048807 419 CKSGNIEKGLELFHLMKQEG-VTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTY----TILITAFCNVNN 493 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~ 493 (757)
.+.|+++.|.+-|....+.+ .. ....|+..+ +..+.|+++.|+++..+++++|++..+..- +-.+++- ..|+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN 231 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN 231 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc
Confidence 89999999999999998874 54 456777655 455779999999999999999875322110 0000000 0000
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 494 FQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA-GFRPDIVCYNHLISGFCKKKMLDKAYEVLQ 572 (757)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (757)
-.. |...+ -+..+|.-...+.+.|+++.|.+.+-.|.-. ....|++|...+.-. ...+++.+..+-+.
T Consensus 232 ---t~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 232 ---TLV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQ 300 (459)
T ss_pred ---hHH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHH
Confidence 000 00000 1122333344455666666666665555432 123355555444322 12334444444455
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HhcCCHHHHHHHHHHhhhcCCC
Q 048807 573 EMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PTVVTYGALIHAF-CVNGHVDEAMKIFKELSSSSNV 650 (757)
Q Consensus 573 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~ 650 (757)
-+++.. |-...|+..++-.||+..-++-|-.++.+-...... .+...|+. ++++ ...-..++|++-++.+.+. +
T Consensus 301 FLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~--l 376 (459)
T KOG4340|consen 301 FLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM--L 376 (459)
T ss_pred HHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH--H
Confidence 555543 334456666666677766666666665442221100 12222322 2222 2234555555555444331 0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 651 SPNTVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
........+-+.--....+ +..|++-+++..+. -.....+-.+.+.+..++..+.++|....+.
T Consensus 377 ~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 377 TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 0000001111111111111 22223333333321 1112233445667778888888888877763
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.03 E-value=3.3e-05 Score=78.76 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIYNILIDSLCKNNQVELALSLM 677 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 677 (757)
.+....++++++..-...-..+|..+++.-.+..-++.|..+|.++.+ .+..+ +++++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 445555555555432121233455566666666667777777777766 34444 55566666666654 5666777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 678 EEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY--ISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 678 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
+--+.+ ...++.--...++-+.+.|+-..|..+|++.+..++.||. .+|..+++.=+.-|+++-+.++-++
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 665543 1223333355666666777777777777777666555554 6677777776777777666655544
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=1.8e-05 Score=75.99 Aligned_cols=319 Identities=11% Similarity=0.084 Sum_probs=192.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch-HHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT-FGTI 335 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l 335 (757)
.++.-..-|...+...|++.+|+.-|..+++.++. +-.++-.-...|...|+...|+.=+...++. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 45555566788888889999999999998886533 3444445556788889999998888888875 566322 2233
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
...+.+.|.+++|..-|+.++... |+..+ ...++.+.-..++-.. ....+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--------~s~~~---~~eaqskl~~~~e~~~-------------------l~~ql 162 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--------PSNGL---VLEAQSKLALIQEHWV-------------------LVQQL 162 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--------CCcch---hHHHHHHHHhHHHHHH-------------------HHHHH
Confidence 456788999999999999988764 21110 0111111111111111 11123
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQ 495 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 495 (757)
..+...|+...|++....+++. .+.|...|..-..+|...|++..|+.-++.+-+..-. +..+..-+-..+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHH
Confidence 3344456666666666666655 2335555555666666666666666555555544322 3334444455555666666
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHH-----------H--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHH
Q 048807 496 EAIKWFDDMSRAGCSADSVVYFT-----------L--ISGLCQAGRMNDASLVVSKLKEAGFRPDIVC---YNHLISGFC 559 (757)
Q Consensus 496 ~A~~~~~~m~~~~~~~~~~~~~~-----------l--i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~ 559 (757)
.++...++.++.+ ||-..+.. | +......++|.++++-.+...+....-.... +..+-.+|.
T Consensus 241 ~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 6666666655542 33221110 0 1123456677777777777776643322222 334455666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEG 613 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 613 (757)
..|++.+|++.-.++++.. +.|..++.--..+|.-...++.|+.-|+...+.+
T Consensus 319 ~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7788888888888888764 4457788888888888888888888888888753
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=5.8e-06 Score=98.57 Aligned_cols=370 Identities=10% Similarity=-0.020 Sum_probs=228.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV--IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 412 (757)
....+...|++.+|.......- ..+. .........+...|+++.+..+++.+... ....+.....
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~----------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~---~~~~~~~l~~ 413 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAG----------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE---VLLENPRLVL 413 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCC----------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH---HHhcCcchHH
Confidence 3445566777776665444331 1111 11122233455678888877777765311 1111222334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC--C----CCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HH
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQEG--V----TPNV--VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA----VT 480 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 480 (757)
.....+...|++++|..++....+.- . .+.. .....+...+...|++++|...+++..+.-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 45556677899999999888775431 0 1111 12223345566789999999999988764222222 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CH
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMSRAGC---SA--DSVVYFTLISGLCQAGRMNDASLVVSKLKEA----GFR--P-DI 548 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~--~-~~ 548 (757)
.+.+...+...|++++|...+++.....- .+ ...++..+...+...|++++|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45566778889999999999988764311 11 1234556677788899999999988776542 211 1 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHH--H
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIG--MTP--NSVTYNTLISFLSKSGNFSAARRVLKKMVKEG--LVPTVV--T 620 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~--~ 620 (757)
..+..+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|...++++.... ...... .
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 345556667778899999999988876431 111 23344556667788999999999998875421 111111 0
Q ss_pred -H-HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HH
Q 048807 621 -Y-GALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT---VIYNILIDSLCKNNQVELALSLMEEMKVK----EVRPN-TN 690 (757)
Q Consensus 621 -~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 690 (757)
. ...+..+...|+.+.|...+..... ....... ..+..+..++...|+.++|...+++.... |..++ ..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPK-PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 0 1122445568999999999877654 1111111 12456777888999999999999988752 32222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
+...+..++.+.|+.++|...+.++++.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667778889999999999999999875
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=5.5e-06 Score=98.76 Aligned_cols=370 Identities=11% Similarity=0.030 Sum_probs=231.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN-AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGM 453 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (757)
.....+...|++.+|........ ..+. ..............|+++.+..++..+.......+..........+
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAG------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCC------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 34455667788877776655442 0000 1111222334556788888777776653211111222334445556
Q ss_pred HHcCChHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHH
Q 048807 454 CRHGRINSAVEFFQEVTRKGL------CAN--AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADS----VVYFTLIS 521 (757)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~ 521 (757)
...|++++|..++..+.+.-. .+. ......+...+...|++++|...+++..+.-...+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 778999999999988765311 111 112223345567899999999999988763211221 24456666
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEA----GFR-PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI----GMT--P-NSVTYNTL 589 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l 589 (757)
.+...|++++|...+++.... |.. ....++..+...+...|++++|...+++..+. +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 778899999999999887643 111 11235566777888999999999998886542 211 1 22345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHH-----HHH
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKE--GLVP--TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIY-----NIL 660 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-----~~l 660 (757)
...+...|++++|...+.+.... ...+ ....+..+...+...|++++|...+...............+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66777889999999999987653 1112 23345556667888999999999998875411111111111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHH
Q 048807 661 IDSLCKNNQVELALSLMEEMKVKEVRPNT---NTYNAMFKGLRQKNMLDKAFKLMDRMIEH----ACHPDY-ISMEILTE 732 (757)
Q Consensus 661 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~ 732 (757)
+..+...|+.+.|...+............ ..+..+..++...|++++|..+++++++. |..++. .+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24455689999999998776542111111 12456777888999999999999998753 333332 45667778
Q ss_pred HHHhcCCHHHHHHHHhhc
Q 048807 733 WLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 733 ~~~~~g~~~~A~~~~~~~ 750 (757)
++...|+.++|.+.+++.
T Consensus 740 a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 889999999999888763
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.94 E-value=0.0001 Score=75.39 Aligned_cols=428 Identities=13% Similarity=0.155 Sum_probs=244.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
|-|..+|+.||.-+..+ ..+++.+.++++...- +.....|..-|..-.+..+++...++|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 77999999999988666 9999999999998754 3367899999999999999999999999988763 355566655
Q ss_pred HHHHH-hcCChhH----HHHHHHHHHhCCCCCcccccC-CHhHHHHHHHH---------HHHcCCHHHHHHHHHHHHHhh
Q 048807 336 INRLC-KLYRADE----ALEVFEKMIAGKETAEISVEP-DVIIFNTLIDG---------LCKVGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 336 i~~~~-~~g~~~~----A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~~ 400 (757)
+.--. ..|+... -.+.|+-.+... ++++ .-..|+..+.. |....+++...+++.++.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~ki-----g~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral--- 164 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKI-----GMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL--- 164 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHh-----ccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh---
Confidence 54322 2333333 233444444321 0111 12235555443 334456666777777764
Q ss_pred cCCCCCCHHHHHH------HHHHHH-------HcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCChHH--HH
Q 048807 401 QKGCMPNAVTYNC------LINGFC-------KSGNIEKGLELFHLMKQ--EGVTPNVVTLNTLVDGMCRHGRINS--AV 463 (757)
Q Consensus 401 ~~~~~~~~~~~~~------li~~~~-------~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~--A~ 463 (757)
......=...|+- -|+... +...+..|.++++++.. +|..-+..+ .-..|--++ +.
T Consensus 165 ~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv 237 (656)
T KOG1914|consen 165 VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQV 237 (656)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHH
Confidence 1111100112221 111111 12234444444444432 122211111 000111111 11
Q ss_pred HHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHhhH-----HHHHHHHHhcCC----
Q 048807 464 EFFQEVTRK----GLC-ANAVTYTILITAFCNVNNFQEAIKWFDD-MSRAGCSADSVVY-----FTLISGLCQAGR---- 528 (757)
Q Consensus 464 ~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~-----~~li~~~~~~g~---- 528 (757)
+++...++. ++. .+..... ....-++++ +.-.+..|++.-. ...-+.+...|+
T Consensus 238 ~~W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 238 ELWKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred HHHHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 112111110 110 0000000 000111111 1111222222110 011112333343
Q ss_pred ---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 529 ---MNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK---MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAA 602 (757)
Q Consensus 529 ---~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 602 (757)
-+++..+++.....-..-+..+|..+.+---..- +.+.....+++++..-...-..+|..++..-.+..-+..|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 3455556655544322223344444433221111 3566667777776543222335778888888888899999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 603 RRVLKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 603 ~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
..+|.++.+.+..+ ++.+.++++.-|| .++.+-|.++|+--.+..| .+...-...++-+...++-..|..+|++..
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 99999999987777 7888888887766 5789999999998766343 344445677888889999999999999999
Q ss_pred hCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 682 VKEVRPN--TNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 682 ~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
..++.|+ ..+|..+++-=..-|+...+.++-+++..
T Consensus 463 ~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 463 TSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8866665 46899999988999999999999888865
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=2e-05 Score=75.61 Aligned_cols=316 Identities=13% Similarity=0.128 Sum_probs=176.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (757)
.++.-..-+...+...|++..|+.-|...++-+ +.+..++-.-...|...|+...|+.-+.++++ .+||-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--------lKpDF~ 106 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--------LKPDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--------cCccHH
Confidence 345555666677777777777777777777643 22333344444567777777777777777776 356643
Q ss_pred HH-HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 372 IF-NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 372 ~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
.- ..-...+.+.|.+++|..-|+.+.. . .|+. |...+|.+-+..+.+ .......+
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~---~--~~s~-------------~~~~eaqskl~~~~e------~~~l~~ql 162 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQ---H--EPSN-------------GLVLEAQSKLALIQE------HWVLVQQL 162 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHh---c--CCCc-------------chhHHHHHHHHhHHH------HHHHHHHH
Confidence 32 2234556677777777777776641 1 1211 111122211111111 11122334
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMN 530 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (757)
..+...|+...|+.....+++.. +.|...|..-..+|...|+...|+.-++...+.. ..+..+..-+-..+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 44556788888888888888763 3377777777888888888888887777665543 335556666777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHH----HHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHH
Q 048807 531 DASLVVSKLKEAGFRPDIVCY----NHL---------ISGFCKKKMLDKAYEVLQEMEDIGMTPNSVT---YNTLISFLS 594 (757)
Q Consensus 531 ~A~~~~~~~~~~g~~~~~~~~----~~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~ 594 (757)
.++...++.++. .||...+ ..+ +......+++.++.+-.+...+.......+. +..+-.++.
T Consensus 241 ~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 888888888775 4554321 111 1112234444445554444444421111111 222233344
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 595 KSGNFSAARRVLKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..|++.+|++...+.++. .| |+.++.--..+|.-...++.|+.-|+...+
T Consensus 319 ~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455555555555555543 23 245555555555555555555555555544
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.3e-07 Score=96.82 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=48.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 487 AFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDK 566 (757)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 566 (757)
-+.+.|++.+|.-.|+..++.+ |.+...|..|.......++-..|+..+++..+.... +....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3455666666666666655553 344555555555555555555555555555554321 34455555555555555555
Q ss_pred HHHHHHHHHhC
Q 048807 567 AYEVLQEMEDI 577 (757)
Q Consensus 567 A~~~~~~~~~~ 577 (757)
|.+.++..+..
T Consensus 372 Al~~L~~Wi~~ 382 (579)
T KOG1125|consen 372 ALKMLDKWIRN 382 (579)
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=1.3e-07 Score=93.86 Aligned_cols=253 Identities=13% Similarity=0.100 Sum_probs=133.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 532 (757)
+.-.|++..++.-.+ ........+......+.++|...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777765444 222221222334445567777777766543 3332222 44544444444333332344444
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 533 SLVVSKLKEAGFRP-DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 533 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
..-+++.......+ +.........++...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444333322221 2222233334555667777777766542 2455555667777777777777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 612 EGLVPTVVTYGALIHAFCV----NGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP 687 (757)
Q Consensus 612 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 687 (757)
. ..|. +...+..++.. .+.+.+|.-+|+++.+ ...++..+.+.+..++...|++++|.+++.+..+.+ +-
T Consensus 160 ~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 160 I--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp C--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred c--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 4 2332 33334443322 2357777777777766 334666677777777777777777777777766543 33
Q ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCH
Q 048807 688 NTNTYNAMFKGLRQKNML-DKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~ 724 (757)
++.++..++.+....|+. +.+.+++.++.. ..|++
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h 269 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTS
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCC
Confidence 455666666666667766 455666666654 35554
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=5.4e-07 Score=92.41 Aligned_cols=240 Identities=14% Similarity=0.081 Sum_probs=169.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
.||++. -..-+.+.|++.+|.-.|+..++.+|. +..+|-.|......+++-..|+..+++.++.+ +-|......|
T Consensus 285 ~pdPf~---eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaL 359 (579)
T KOG1125|consen 285 HPDPFK---EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMAL 359 (579)
T ss_pred CCChHH---HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 345544 334567999999999999999999876 89999999999999999999999999999975 4567788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCccccc--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVE--PDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC 413 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 413 (757)
.-.|...|.-.+|++.+++.+........... ++...-+. ..+.....+....++|-++.. ..+..+|......
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~--~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAAR--QLPTKIDPDVQSG 435 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHH--hCCCCCChhHHhh
Confidence 89999999999999999998765410000000 00000000 111112223344455555531 3444467777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 414 LINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
|.-.|.-.|++++|.+.|+.++..... |...||-|...++...+.++|+..|.++++..+. -+.+...|.-.|...|.
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGA 513 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhh
Confidence 888888888888888888888876432 6677888888888888888888888888876332 12344446667888888
Q ss_pred HHHHHHHHHHHHH
Q 048807 494 FQEAIKWFDDMSR 506 (757)
Q Consensus 494 ~~~A~~~~~~m~~ 506 (757)
+++|.+.|-..+.
T Consensus 514 ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 514 YKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888766543
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=3e-06 Score=95.05 Aligned_cols=225 Identities=11% Similarity=0.082 Sum_probs=156.7
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 510 SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD-----IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV 584 (757)
Q Consensus 510 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 584 (757)
|.....|-..|....+.++.++|.+++++.+.. +.+. ...|.++++.-...|.-+...++|+++.+.. ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 445566777777777777777777777776654 2111 2356677776667777777788888877652 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
.|..|...|.+.+.+++|.++++.|.++ +.-....|...+..+.++.+-+.|..++.+..+...-........-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 6777888888888888888888888875 334567777788888888888888888888777221111333455566667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY--ISMEILTEWLSEAGQ 739 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~ 739 (757)
.+.|+.+.+..+|+..+.. .+.-...|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|.-.+..=...|+
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 7788888888888887764 2345567888888888888888888888888887777754 566666665556565
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=2.6e-07 Score=91.82 Aligned_cols=247 Identities=15% Similarity=0.143 Sum_probs=105.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+.-.|.+..++.-.+ ..... .+.+.....-+.++|...|+.+.++ .++ ..+..|.......+...+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~------~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei----~~~~~~~l~av~~la~y~ 76 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFS------PENKLERDFYQYRSYIALGQYDSVL---SEI----KKSSSPELQAVRLLAEYL 76 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTST------CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-----TTSSCCCHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCC------chhHHHHHHHHHHHHHHcCChhHHH---HHh----ccCCChhHHHHHHHHHHH
Confidence 344566666665444 22211 1223344445566666667665433 333 222245555554444444
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048807 419 CKSGNIEKGLELFHLMKQEGVT-PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEA 497 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 497 (757)
...++-+.++.-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 3334444444444333322222 12222222233444456666666554332 1344444555566666666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 498 IKWFDDMSRAGCSADSVVYFTLISGLCQ----AGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 498 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
.+.++.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. +.+++.+.+.+..+....|++++|.+++.+
T Consensus 151 ~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 151 EKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666665442 12 222223322221 12355555555554333 334444455555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 048807 574 MEDIGMTPNSVTYNTLISFLSKSGNF-SAARRVLKKMV 610 (757)
Q Consensus 574 ~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 610 (757)
..+.+ +.|..+...++......|+. +.+.+.+.++.
T Consensus 227 al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 227 ALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 44433 23334444444444444444 33444444444
No 110
>PLN02789 farnesyltranstransferase
Probab=98.76 E-value=6e-06 Score=83.23 Aligned_cols=214 Identities=13% Similarity=0.069 Sum_probs=142.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG-DFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
+..+-..+...++.++|+.+.+++++.++. +..+|+.-..++...| ++++++..++++.+.+ +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 334444556677888888888888887655 6677877777777777 5788888888888765 345566776655566
Q ss_pred hcCCh--hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 341 KLYRA--DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 341 ~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+.|+. ++++..++++++.+ +.|..+|+...-.+...|+++++++.++++. +..+.|..+|+.....+
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I----~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL----EEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHCCCchhHHHHHHHHH
Confidence 66653 66788888888765 6677888888888888888888888888874 23355677777766655
Q ss_pred HHc---CC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048807 419 CKS---GN----IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRH----GRINSAVEFFQEVTRKGLCANAVTYTILITA 487 (757)
Q Consensus 419 ~~~---g~----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 487 (757)
.+. |. .+++++...++++... -|...|+-+...+... +...+|.+.+.+..+.++. +......|++.
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~ 264 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDL 264 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHH
Confidence 544 22 2456666666666533 2566677666666652 3345577777666654332 55666667777
Q ss_pred HHh
Q 048807 488 FCN 490 (757)
Q Consensus 488 ~~~ 490 (757)
|+.
T Consensus 265 ~~~ 267 (320)
T PLN02789 265 LCE 267 (320)
T ss_pred HHh
Confidence 664
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.76 E-value=0.00069 Score=73.77 Aligned_cols=527 Identities=15% Similarity=0.118 Sum_probs=289.2
Q ss_pred HhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 192 LRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCR 271 (757)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~ 271 (757)
...+++.+|+...++..++ .||.. +..++.++... +.+..+++..+++.....+.. |..|...+-.+|..
T Consensus 20 ld~~qfkkal~~~~kllkk----~Pn~~-~a~vLkaLsl~----r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK----HPNAL-YAKVLKALSLF----RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD 89 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH----CCCcH-HHHHHHHHHHH----HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH
Confidence 3455566666666666654 34442 33344444322 233345666666655555433 78889999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC-Ch-----
Q 048807 272 KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY-RA----- 345 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~----- 345 (757)
.|+.++|..+++++.+.. |+......+..+|.+.+++.+-.+.--+|-+. ++-+.+.+-++++.+...- ..
T Consensus 90 ~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence 999999999999999875 45777778888999998887766555555443 3456677767777665422 11
Q ss_pred ----hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 048807 346 ----DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421 (757)
Q Consensus 346 ----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (757)
.-|.+.++++++.+ +. + ....-.......+...|++++|++++..-.. ..-.+-+...-+.-++.+...
T Consensus 167 ~i~l~LA~~m~~~~l~~~--gk--~-~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la--~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKK--GK--I-ESEAEIILYLLILELQGKYQEALEFLAITLA--EKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred chhHHHHHHHHHHHhccC--Cc--c-chHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhccccchHHHHHHHHHHHHh
Confidence 23566677776643 11 1 1111222233455678899999999954321 222334455556778888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----------------HcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 048807 422 GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMC----------------RHGRINSAVEFFQEVTRKGLCANAV-TYTIL 484 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 484 (757)
+++.+..++-.++...|.. | |...++.+. ..+..+...+...+......+ ++. ++--+
T Consensus 240 ~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp~LA~lel 314 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GPYLARLEL 314 (932)
T ss_pred cChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-CcHHHHHHH
Confidence 9999999999999988643 2 333222211 112233333333333322111 211 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHH
Q 048807 485 ITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIV-------CYNHLISG 557 (757)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-------~~~~li~~ 557 (757)
...+-.-|+.+++...|-+-. | +-..|..=+..|...=..+.-..++...... .++.. .+...+..
T Consensus 315 ~kr~~~~gd~ee~~~~y~~kf--g---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~ 387 (932)
T KOG2053|consen 315 DKRYKLIGDSEEMLSYYFKKF--G---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLL 387 (932)
T ss_pred HHHhcccCChHHHHHHHHHHh--C---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHH
Confidence 223335577777665553321 1 1112222222222222222222222222211 01100 01111111
Q ss_pred HHhcCC-----HHHHHHHHHHH---HhCC------CCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHHh
Q 048807 558 FCKKKM-----LDKAYEVLQEM---EDIG------MTPNS---------VTYNTLISFLSKSGNFS---AARRVLKKMVK 611 (757)
Q Consensus 558 ~~~~g~-----~~~A~~~~~~~---~~~~------~~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~m~~ 611 (757)
-.-.|. -+.-..++.+. .++| +-|.. -+-+.|++.|.+.++.. +|+-+++.-..
T Consensus 388 ~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt 467 (932)
T KOG2053|consen 388 LRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT 467 (932)
T ss_pred HHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 111121 12222222221 1222 12222 23467788888888754 56666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 612 EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNT 691 (757)
Q Consensus 612 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 691 (757)
.. +.|..+-..+|..|+-.|-+..|.++|+.+.- ..+..|..-|. +..-+...|++..+...++.....--..-..+
T Consensus 468 ~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~ 544 (932)
T KOG2053|consen 468 KS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKET 544 (932)
T ss_pred cC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhh
Confidence 42 34666777889999999999999999998866 56666665443 33455667899999999988775311111223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH---HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhchhcc
Q 048807 692 YNAMFKGLRQKNMLDKAFKLMD---RMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754 (757)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~---~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 754 (757)
-. +|..-++.|.+.+-.++.. ++...--.--..+-+..++.++..++.++-...++.+...|
T Consensus 545 ~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 545 PE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPP 609 (932)
T ss_pred HH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCc
Confidence 33 3333456777776655432 22211001112445566777888899999999888887544
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=4.8e-06 Score=93.55 Aligned_cols=242 Identities=13% Similarity=0.096 Sum_probs=177.4
Q ss_pred HHHHHhhccCCCc-chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHH
Q 048807 169 LVYNELDNNLRNT-HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLV 247 (757)
Q Consensus 169 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (757)
.-|+++....||. ..|-.-+.-....+..++|++++++++.+ + +....++-
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t---I---------------------N~REeeEK---- 1496 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT---I---------------------NFREEEEK---- 1496 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---C---------------------CcchhHHH----
Confidence 4455555555654 67988899999999999999999998764 1 11111111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048807 248 SKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP 327 (757)
Q Consensus 248 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 327 (757)
.-.|.++++.-..-|.-+...++|+++.+.- ..-..|..|...|.+.+.+++|.++|+.|.+. +..
T Consensus 1497 -----------LNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q 1562 (1710)
T KOG1070|consen 1497 -----------LNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQ 1562 (1710)
T ss_pred -----------HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcc
Confidence 2256677777777788888889999988752 12467888889999999999999999999876 234
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 048807 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEP--DVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM 405 (757)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 405 (757)
....|...+..+.+..+.+.|.+++.++++.- |. .+....-.+..-.+.|+.+.+..+|+.. ....|
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-------Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl----l~ayP 1631 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSL-------PKQEHVEFISKFAQLEFKYGDAERGRTLFEGL----LSAYP 1631 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-------chhhhHHHHHHHHHHHhhcCCchhhHHHHHHH----HhhCc
Confidence 66778889999999999899999999988752 22 3555566677777889999999999887 44456
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHH
Q 048807 406 PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV--VTLNTLVDGMCRHGRINSAV 463 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~ 463 (757)
.-...|+..|+.-.+.|+.+.+..+|++....++.|-. ..|...+..=-+.|+-..+.
T Consensus 1632 KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1632 KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 67788999999999999999999999999888766532 34455554444445544433
No 113
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=1.6e-05 Score=80.21 Aligned_cols=204 Identities=13% Similarity=0.073 Sum_probs=118.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG-KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
.++.++|+.+.+++++.. +.+..+|+.....+...| +++++++.++++. ...+.+..+|+.-...+.+
T Consensus 50 ~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i----~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVA----EDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHH----HHCCcchHHhHHHHHHHHH
Confidence 356667777777776653 444556666666666666 4577777776663 2334555566655555555
Q ss_pred cCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC--
Q 048807 421 SGNI--EKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV---NN-- 493 (757)
Q Consensus 421 ~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~-- 493 (757)
.|+. ++++++++++.+...+ |..+|+...-.+...|+++++++.++++++.++. |..+|+.....+.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 5542 5566666666665433 5666666666666677777777777777776544 555666555444433 21
Q ss_pred --HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 494 --FQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA----GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 494 --~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
.++++....+++... +.+...|+.+...+... +...+|...+.+....+ ..+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 234555555555543 44556666666666552 33445666666655543 2245566666666654
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.7e-06 Score=91.21 Aligned_cols=222 Identities=16% Similarity=0.182 Sum_probs=182.9
Q ss_pred ccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 366 VEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVT 445 (757)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (757)
.+|--..-..+...+...|-..+|..+|++.. .|..+|.+|+..|+..+|.++..+..++ +||...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~l 459 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRL 459 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchh
Confidence 34444455678889999999999999999874 6888999999999999999999988884 678999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048807 446 LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ 525 (757)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 525 (757)
|..+.+......-+++|.++.+..-.. +-..+.......+++.++.+.|+.-.+.+ +.-..+|-.+..+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 999999888888888898888775443 22222333344789999999999887764 5567789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 526 AGRMNDASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARR 604 (757)
Q Consensus 526 ~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 604 (757)
.++++.|.+.|...... .|| ...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+.|.+++|++
T Consensus 532 lek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 99999999999998876 444 5689999999999999999999999999887 5566778888888889999999999
Q ss_pred HHHHHHhC
Q 048807 605 VLKKMVKE 612 (757)
Q Consensus 605 ~~~~m~~~ 612 (757)
.+.++...
T Consensus 609 A~~rll~~ 616 (777)
T KOG1128|consen 609 AYHRLLDL 616 (777)
T ss_pred HHHHHHHh
Confidence 99988753
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=6e-06 Score=80.87 Aligned_cols=188 Identities=13% Similarity=-0.007 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc---
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL--EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV--- 330 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 330 (757)
......+..++..+.+.|++++|...|+++.+..+.. ...++..+...+.+.|++++|...|+++.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 3456677888899999999999999999998876431 12577888999999999999999999999864 22222
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 048807 331 TFGTIINRLCKL--------YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK 402 (757)
Q Consensus 331 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (757)
++..+..++.+. |+.++|.+.++++++.. +.+...+..+..... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~----~~------~~~------ 165 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDY----LR------NRL------ 165 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHH----HH------HHH------
Confidence 455555666554 78899999999998864 333333332221110 00 000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 403 GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV--TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 403 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
......+...|.+.|++++|+..++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 166 -----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00122456678888888888888888887632 223567888888888889988888888877664
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=4e-06 Score=88.46 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
.-..+...+...|-...|..+|+++. .|...+.+|...|+.++|..+..+..++ +||...|..+++...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33445566666666666666666543 3455566666666666666666666553 556666666666665
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMK 639 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (757)
...-+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 555566666666554322 11111112223566666666666665542 2244566666666666667777766
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 640 IFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 640 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.|..... .-+.+...||++-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+-|.+++|++.+.++.+
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6666654 222233467777777777777777777777766654 33444555555556666777777766666654
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=8e-08 Score=60.37 Aligned_cols=32 Identities=31% Similarity=0.732 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048807 254 GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVL 285 (757)
Q Consensus 254 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 285 (757)
|+.||.++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=5.2e-06 Score=77.29 Aligned_cols=160 Identities=17% Similarity=0.102 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc
Q 048807 263 TQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 342 (757)
..+-..+.-.|+-+.+..+........ +.|....+..+....+.|++.+|...|.+..... ++|..+|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666666666666666544332 2255556666666777777777777777766654 56667777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 048807 343 YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422 (757)
Q Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (757)
|++++|..-|.+.++.. +.+....|.|.-.|.-.|+.+.|..++.... .....|...-..+.......|
T Consensus 148 Gr~~~Ar~ay~qAl~L~-------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~----l~~~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 148 GRFDEARRAYRQALELA-------PNEPSIANNLGMSLLLRGDLEDAETLLLPAY----LSPAADSRVRQNLALVVGLQG 216 (257)
T ss_pred cChhHHHHHHHHHHHhc-------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH----hCCCCchHHHHHHHHHHhhcC
Confidence 77777777777776652 4455666666666777777777777776663 222335566666666666777
Q ss_pred CHHHHHHHHHHHH
Q 048807 423 NIEKGLELFHLMK 435 (757)
Q Consensus 423 ~~~~A~~~~~~m~ 435 (757)
++++|.++-..-.
T Consensus 217 ~~~~A~~i~~~e~ 229 (257)
T COG5010 217 DFREAEDIAVQEL 229 (257)
T ss_pred ChHHHHhhccccc
Confidence 7777766655433
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=1.5e-05 Score=78.07 Aligned_cols=187 Identities=11% Similarity=-0.008 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 048807 546 PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS---VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV--VT 620 (757)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~ 620 (757)
.....+..++..+.+.|++++|...|+++.+.. +.+. .++..+..++.+.|++++|...++++++....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677777888888888888888888887763 2222 45677788888888888888888888875322111 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 621 YGALIHAFCVN--------GHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNT 691 (757)
Q Consensus 621 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 691 (757)
+..+..++... |+.++|.+.++++.+. .|+. ..+..+..... ... ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~-------~~~-------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRN-------RLA-------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHH-------HHH-------HH
Confidence 55555556554 6778888888887762 2332 22222211100 000 000 01
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHhhchhcc
Q 048807 692 YNAMFKGLRQKNMLDKAFKLMDRMIEHAC-HP-DYISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754 (757)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 754 (757)
...+...+.+.|++++|+..+++.++..- .| ....+..++.++.+.|+.++|..+++.+...+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 12456678888999999999999886511 22 23678888889999999999999888876544
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=2.5e-05 Score=72.89 Aligned_cols=159 Identities=17% Similarity=0.106 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048807 552 NHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVN 631 (757)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (757)
..+-..+...|+-+.+..+........ +.|......++....+.|++.+|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666666666666655544332 3454555556666666777777777777666542 45666777777777777
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 632 GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKL 711 (757)
Q Consensus 632 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 711 (757)
|++++|..-|.+..+..+ .+...++.+...|.-.|+.+.|..++......+ .-|...-..+..+....|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~--~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAP--NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhcc--CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 777777777766666222 233446666666666677777777776666542 22455555566666666777777666
Q ss_pred HHHH
Q 048807 712 MDRM 715 (757)
Q Consensus 712 ~~~~ 715 (757)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5544
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=5.7e-05 Score=84.78 Aligned_cols=221 Identities=13% Similarity=0.109 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc------
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV------ 329 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------ 329 (757)
+.+...+..|+..|...|++++|.++.+...+..+. ....|-.+...+.+.++.+.+.-+ .+...- ..+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHHH
Confidence 456778999999999999999999999988876543 344455555577788887776655 333321 1111
Q ss_pred -------------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 330 -------------VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 330 -------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
..+..+..+|-+.|+.++|..+++++++.+ +.|+.+.|.+...|+.. ++++|++++.+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 333344444444555555555555555543 34445555555555555 555555554444
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCC
Q 048807 397 RLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK-GLC 475 (757)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~ 475 (757)
. ..+...+++.++.+++.++....+ .+.+.-.++.+.+... |..
T Consensus 176 V------------------~~~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 176 I------------------YRFIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKVLGHREFT 220 (906)
T ss_pred H------------------HHHHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHHHhhhccc
Confidence 2 113333344444444444444311 1222222222333222 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048807 476 ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLC 524 (757)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 524 (757)
.-..++-.+-..|-+..+++++..+++.+++.. +.|.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 233444555566777777888888888877764 345556666666665
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=5.4e-05 Score=84.28 Aligned_cols=240 Identities=13% Similarity=0.104 Sum_probs=167.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchH
Q 048807 254 GVFPNAVWLTQLITRFCRKGKTDEA-WDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 254 g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
|...++...+.+=.+...-|..++| .+++.++.+ ++....+-....+++.-.....+. .+.+...+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 89 (694)
T PRK15179 23 GPASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQ 89 (694)
T ss_pred CCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHH
Confidence 4456677777777777888888777 455555443 222222222233333333333333 45567888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 412 (757)
..|.....+.|++++|..+++.+.+.. |.+......++..+.+.+++++|+..+++. ....+.+....+
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~-------Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~----l~~~p~~~~~~~ 158 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRF-------PDSSEAFILMLRGVKRQQGIEAGRAEIELY----FSGGSSSAREIL 158 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHH----hhcCCCCHHHHH
Confidence 888899999999999999999999864 556778888999999999999999999998 455577788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVN 492 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 492 (757)
.+..++.+.|++++|.++|+++...+ +-+..++..+...+...|+.++|...|++..+.. .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------
Confidence 99999999999999999999999843 2357889999999999999999999999998863 234455554432
Q ss_pred CHHHHHHHHHHHHHcC----CCCCHhhHHHHHHHHHh
Q 048807 493 NFQEAIKWFDDMSRAG----CSADSVVYFTLISGLCQ 525 (757)
Q Consensus 493 ~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~ 525 (757)
++..-...++++.-.+ .+..+.+..-+|.-|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 3334444555554333 22333344444444443
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.48 E-value=0.0041 Score=68.00 Aligned_cols=223 Identities=14% Similarity=0.124 Sum_probs=128.1
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048807 87 SSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDY 166 (757)
Q Consensus 87 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 166 (757)
...+|++-...+.++.|.. ....++.++ ...+.|..++|..+++.....+ +.|..+...+-.+|.+.|..++
T Consensus 24 qfkkal~~~~kllkk~Pn~----~~a~vLkaL---sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA----LYAKVLKAL---SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc----HHHHHHHHH---HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 4567777777788777651 112222222 2234566788887777765544 4588899999999999999999
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHHhcCChhh----HHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccCh--
Q 048807 167 SLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRD----AFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTD-- 240 (757)
Q Consensus 167 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-- 240 (757)
|..+|+++....|+-.....+-.+|+|-+.+.+ |++++... .-+.+.+-++.+-+...-.-.+....
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-------pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-------PKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcccchHHHHHHHHHHhccCCcccccch
Confidence 999999998766665555666777777766655 45555432 23445555555555432100111110
Q ss_pred --HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 241 --EELVGLVSKFAEHG-VFPNAVWLTQLITRFCRKGKTDEAWDVL-HVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 241 --~~~~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
.-|....+.+++.+ ...+..-.......+...|++++|++++ ....+.-..-+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 11122333333332 2222222223333445567777777776 3333333333444555566666667777777777
Q ss_pred HHHHHHCC
Q 048807 317 FTEMKEND 324 (757)
Q Consensus 317 ~~~m~~~g 324 (757)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 77776665
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=2.8e-05 Score=87.12 Aligned_cols=169 Identities=8% Similarity=0.074 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV-TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
.+...|..|+..|...+++++|.++.++..+. .|+.. .|..+...+.+.++.+++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 46788999999999999999999999977776 56644 444444566677776666555 3332
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
......++.-...+...+. . ...+...+..++.+|-+.|+.++|..+++++++.. +-|..+.|.+.
T Consensus 92 --------~~~~~~~~~~ve~~~~~i~----~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~A 157 (906)
T PRK14720 92 --------SFSQNLKWAIVEHICDKIL----L-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLA 157 (906)
T ss_pred --------hcccccchhHHHHHHHHHH----h-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 2222333322222333332 1 23345578888889999999999999999999887 34788899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
..|... ++++|.+++.+++.. |...+++.++..++.++...
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 999888 999999888887664 55566777777777777665
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.2e-07 Score=58.36 Aligned_cols=31 Identities=45% Similarity=0.831 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 650 VSPNTVIYNILIDSLCKNNQVELALSLMEEM 680 (757)
Q Consensus 650 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 680 (757)
+.||..+|++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=5.4e-05 Score=84.26 Aligned_cols=171 Identities=10% Similarity=0.058 Sum_probs=136.0
Q ss_pred HHHHHcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 267 TRFCRKGKTDEAWDVLHVLMK--FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
....+.|.+..+.+-+-++.. ++.+.++..+-.|.....+.|.+++|..+++...+.. +.+...+..++..+.+.++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~ 135 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQG 135 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcc
Confidence 344455555554444433321 2334478999999999999999999999999999974 3346677888899999999
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI 424 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (757)
+++|+...++.+..+ +.+......+...+.+.|++++|.++|+++. . ..+.+..++..+...+...|+.
T Consensus 136 ~eeA~~~~~~~l~~~-------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~---~-~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 136 IEAGRAEIELYFSGG-------SSSAREILLEAKSWDEIGQSEQADACFERLS---R-QHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHH---h-cCCCcHHHHHHHHHHHHHcCCH
Confidence 999999999999875 6678888999999999999999999999994 3 4455688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 425 EKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
++|...|+...+. ..|....|+..+
T Consensus 205 ~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 205 WRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 9999999999876 234455555544
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=5.3e-06 Score=77.80 Aligned_cols=116 Identities=9% Similarity=0.114 Sum_probs=60.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH-HhcCC--hhHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL-CKLYR--ADEA 348 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A 348 (757)
.++.+++...++..++.++. |...|..+...|...|++++|...|++..+.+ +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34445555555555554433 55555555555555555555555555555543 22344444444432 34444 3555
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
.++++++++.+ +.+..++..+...+.+.|++++|...++++
T Consensus 130 ~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 130 REMIDKALALD-------ANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555543 344555555555555555555555555555
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=7.6e-06 Score=72.52 Aligned_cols=109 Identities=11% Similarity=-0.100 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
.+..+...+...|++++|...|+.+...++. +...|..+..++.+.|++++|...|++..+.+ +.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 4556788899999999999999999998765 89999999999999999999999999999875 567888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
..|+.++|+..|+..++.. +.+...|.....
T Consensus 104 ~~g~~~eAi~~~~~Al~~~-------p~~~~~~~~~~~ 134 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS-------YADASWSEIRQN 134 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHH
Confidence 9999999999999999864 445555544433
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=3e-05 Score=72.80 Aligned_cols=119 Identities=9% Similarity=0.088 Sum_probs=74.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH-HHcCC
Q 048807 307 EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL-CKVGK 385 (757)
Q Consensus 307 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~ 385 (757)
.++.+++...+++.++.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------GENAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCC
Confidence 455566666666666654 4456666666666667777777777777766654 44566666666643 45555
Q ss_pred --HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 386 --QEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 386 --~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
.++|.+++++.. ...+.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 124 ~~~~~A~~~l~~al----~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 124 HMTPQTREMIDKAL----ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCcHHHHHHHHHHH----HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 366777666663 333445666666666666677777777777666665
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00011 Score=74.66 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT 375 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
.+-...-.+...|++++|++.++.++..- +.|.+.+......+.+.++.++|.+.+++++... +.....+-.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-------P~~~~l~~~ 379 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-------PNSPLLQLN 379 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCccHHHHH
Confidence 33333444556677777777777777652 3344445555567777777777777777777653 233666677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
+..+|.+.|++.+|..+++.. ....+.|...|..|..+|...|+..++.....+... -
T Consensus 380 ~a~all~~g~~~eai~~L~~~----~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~ 437 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRY----LFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------L 437 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHH----hhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------h
Confidence 777777777777777777776 344566777777777777777777777776666543 2
Q ss_pred cCChHHHHHHHHHHHHC
Q 048807 456 HGRINSAVEFFQEVTRK 472 (757)
Q Consensus 456 ~g~~~~A~~~~~~~~~~ 472 (757)
.|++++|...+....+.
T Consensus 438 ~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 46667776666666554
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=1.9e-05 Score=70.03 Aligned_cols=106 Identities=16% Similarity=0.055 Sum_probs=70.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 280 DVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
.+|++..+.+ +..+......+.+.|++++|...|++.+... +.+...|..+...+.+.|++++|+..|+++++.+
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555543 2234455666677777777777777777664 4456666777777777777777777777777654
Q ss_pred CCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 360 ETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 360 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+.+..++..+..++.+.|++++|...|+...
T Consensus 89 -------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 89 -------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566777777777777777777777777763
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00056 Score=63.97 Aligned_cols=157 Identities=20% Similarity=0.156 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
.....-...|+..|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+- .+..|.+.|..++
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~aw 179 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAW 179 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHH
Confidence 333334455667777777776665521 2222222234455666677777777777763 3555666666665
Q ss_pred Hhc----CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 629 CVN----GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 629 ~~~----g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
.+. +.+.+|.-+|+++.+ ..+|+..+.+....++...|++++|..++++.+++. ..++.+...++.+-...|+
T Consensus 180 v~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 442 456777777777766 455777777777777777777777777777777653 3456666666666566666
Q ss_pred HHHHH-HHHHHHHH
Q 048807 705 LDKAF-KLMDRMIE 717 (757)
Q Consensus 705 ~~~A~-~~~~~~~~ 717 (757)
-.++. +.+.++..
T Consensus 257 d~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 257 DAEVTERNLSQLKL 270 (299)
T ss_pred ChHHHHHHHHHHHh
Confidence 54443 45555543
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00026 Score=66.08 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 563 MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE 612 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (757)
++.+|.-+|++|.++- +|+..+.+....++...|++++|..+++..+.+
T Consensus 188 k~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444555555554431 444444444444444555555555555555444
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00021 Score=72.61 Aligned_cols=138 Identities=19% Similarity=0.164 Sum_probs=90.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 048807 558 FCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDE 636 (757)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 636 (757)
+...|++++|+..++.+.... |.|..-+....+.+.+.++.++|.+.+++++.. .|+ ......+..+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 345567777777777766552 344455555566677777777777777777764 344 4555566777777777777
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 637 AMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 637 A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
|+++++.... ..+.|...|..|..+|...|+..+|..-..+ .+...|++++|+..+....
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 7777777665 4455666777777777777776666544333 3455677777777777776
Q ss_pred Hc
Q 048807 717 EH 718 (757)
Q Consensus 717 ~~ 718 (757)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 54
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0011 Score=61.55 Aligned_cols=187 Identities=18% Similarity=0.210 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 422 GNIEKGLELFHLMKQE---G-VTPNVVT-LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQE 496 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 496 (757)
.+.++..+++..+... | ..++..+ |..++-+....|+.+.|...++++...- +-+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4456666666655532 2 3444433 4455556667777888888777776653 2222222222233445677888
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 497 AIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMED 576 (757)
Q Consensus 497 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (757)
|+++|+.+++.+ +.|.+++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888877765 666677776666777777777777777776665 455778888888888888888888888888776
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 048807 577 IGMTPNSVTYNTLISFLSKSG---NFSAARRVLKKMVKE 612 (757)
Q Consensus 577 ~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 612 (757)
.. |.+...+..+...+.-.| +.+-|.+.|.+.++.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 53 445555555555543333 566777777777774
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=5.8e-05 Score=66.49 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.+......++..+.+.|++++|.+.|+.+...++. +...|..+...+.+.|++++|..++++..+.+ +.+...+..+.
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 35566778889999999999999999999987754 88999999999999999999999999998875 55677788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 048807 337 NRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..+...|++++|...|+..++.+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998854
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.002 Score=59.96 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=73.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 557 GFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDE 636 (757)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 636 (757)
+....|+.+.|...++++...- +.+..+-..-...+-..|++++|+++++.+++.+ +.|.+++..-+...-..|+.-+
T Consensus 61 AAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHH
Confidence 3344455555555555554432 2222221111222334455555555555555543 2244444444444445555555
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 048807 637 AMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN---MLDKAFKLMD 713 (757)
Q Consensus 637 A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~ 713 (757)
|++-+....+ .+..|...|.-+...|...|++++|.-.+++++-.. +-++..+..+.+.+.-.| +.+-|.++|.
T Consensus 139 aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 139 AIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555554 233455555555555555555555555555555421 223334444444443333 2344555555
Q ss_pred HHHH
Q 048807 714 RMIE 717 (757)
Q Consensus 714 ~~~~ 717 (757)
+.++
T Consensus 216 ~alk 219 (289)
T KOG3060|consen 216 RALK 219 (289)
T ss_pred HHHH
Confidence 5554
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=9.5e-05 Score=65.10 Aligned_cols=104 Identities=19% Similarity=0.125 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFK 697 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 697 (757)
......+...+...|++++|...++.+.. . .+.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA-Y-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34455556666667777777777776655 1 22355566667777777777777777777766542 335566666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048807 698 GLRQKNMLDKAFKLMDRMIEHACHPDYIS 726 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 726 (757)
++...|++++|...+++.++. .|+...
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 777777777777777777653 454433
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=0.00011 Score=75.56 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 624 LIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
|+..+...++++.|+.+|+++.+. .|+. ...++..+...++-.+|.+++++.+.. .+-+...+..-...|.+.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 333444445555555555555541 1332 223444444455555555555555542 1223444444445555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhhchhc
Q 048807 704 MLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEAGQTEKLKKFVQGYAVS 753 (757)
Q Consensus 704 ~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (757)
+++.|+++.+++.+ +.|+. .+|..|+.+|...|++++|.-.++.+|..
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 55555555555554 24433 45555555555555555555555555543
No 140
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.033 Score=59.20 Aligned_cols=363 Identities=12% Similarity=0.080 Sum_probs=179.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCC--------ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKEN-DIEP--------SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETA 362 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 362 (757)
|.+..|..+...-...-+++.|...|-+...- |++. +...-.+=+.+ --|++++|.+++-.+-.++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence 56677777776666666666666666544331 1110 00000111111 2477888888777664432
Q ss_pred cccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048807 363 EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN---AVTYNCLINGFCKSGNIEKGLELFHLMKQEGV 439 (757)
Q Consensus 363 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (757)
..|..+.+.|++-...++++.- .+...| ...|+.+...+.....+++|.+.|..-..
T Consensus 765 ------------LAielr~klgDwfrV~qL~r~g-----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--- 824 (1189)
T KOG2041|consen 765 ------------LAIELRKKLGDWFRVYQLIRNG-----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--- 824 (1189)
T ss_pred ------------hhHHHHHhhhhHHHHHHHHHcc-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 2355666777776666655432 111112 35677777777777777777777764321
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 048807 440 TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTL 519 (757)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 519 (757)
....+.++.+..++++-..+-..+ +.+....-.+..++...|.-++|.+.|-+-.. | ...
T Consensus 825 ------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaA 884 (1189)
T KOG2041|consen 825 ------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAA 884 (1189)
T ss_pred ------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHH
Confidence 122344555555555544433332 22445556677777777777777766643211 1 123
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 048807 520 ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCY--------------NHLISGFCKKKMLDKAYEVLQEMEDI----GMTP 581 (757)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~ 581 (757)
+..|...++|.+|.++-+...- |.+.+. ...|..+.+.|+.-.|.+++.+|.+. +.++
T Consensus 885 v~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~ 960 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPY 960 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCH
Confidence 4556666777777766554321 222221 12234455566666666666665432 2222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 048807 582 NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILI 661 (757)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 661 (757)
-..--..++.++. ..+..++.+-.++....|...+... +...|-..++-++.+..-. | ...+.|..|.
T Consensus 961 lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilA 1028 (1189)
T KOG2041|consen 961 LRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILA 1028 (1189)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHH
Confidence 2111111111111 1223334444444444443222211 1222333333333332221 1 2344555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 662 DSLCKNNQVELALSLMEEMKV-KEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
+--...|.++.|+..--.+.+ ..+-|....|..+.-+-+....+...-+.|-++
T Consensus 1029 Qrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1029 QRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 666677888888876555554 235566677776665555544444444434333
No 141
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.97 E-value=0.028 Score=56.96 Aligned_cols=456 Identities=12% Similarity=0.135 Sum_probs=238.6
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH--Hh
Q 048807 269 FCRKGKTDEAWDVLHVLMKFDAPL-----EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL--CK 341 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~ 341 (757)
+-+++++.+|.++|.++.+.--.. ..+..+.++++|.. .+.+.....+.+..+. .| ...|..+..++ .+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 457899999999999887642211 13455677788876 4566666666666554 23 44566666544 57
Q ss_pred cCChhHHHHHHHHHHhCCCCCc-c-------cccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CCCCCHHHHH
Q 048807 342 LYRADEALEVFEKMIAGKETAE-I-------SVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK-GCMPNAVTYN 412 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 412 (757)
.+.+.+|.+.+......-.... . ..-+|...-+..++++...|++.+++.+++++..+... ...-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 8889999988877655410000 0 01123344466788899999999999999998644222 2345788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQE---GVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC 489 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 489 (757)
.++-.+.++ .|-++.+. .+-|+ |--++-.|.+.=+.-++. .-..+-|.......++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~------~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQR------PYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhc------hHHhhCcHHHHHHHHHHHHH
Confidence 866666543 33333322 12222 333444443321111110 00011222222222222222
Q ss_pred hcC--CHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcC
Q 048807 490 NVN--NFQEAIKWFDDMSRAGCSADS-VVYFTLISGLCQAGRMNDASLVVSKLKEAGFR----PDIVCYNHLISGFCKKK 562 (757)
Q Consensus 490 ~~g--~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g 562 (757)
-.. +..--.++++...+.-+.|+. .....+...+.+ +.+++..+-+.+....+. -=..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111112222222222223332 222333333333 334444443333322111 02345666777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCC-HHHH-HHHHHHHH
Q 048807 563 MLDKAYEVLQEMEDIGMTPNSVTY-------NTLISFLS----KSGNFSAARRVLKKMVKEGLVPT-VVTY-GALIHAFC 629 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~~~-------~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~~~~-~~li~~~~ 629 (757)
+...|.+.+.-+.-.+ |+...- ..+.+..+ ...+...=+.+|+.....++..- .+.| ..-..-+-
T Consensus 313 ~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 313 QTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLW 390 (549)
T ss_pred hHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 7777777776665542 322211 11222222 11123344455555555432211 1111 11122344
Q ss_pred hcCC-HHHHHHHHHHhhhcCCCCCCHHHHHHH----HHHHHh---cCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 048807 630 VNGH-VDEAMKIFKELSSSSNVSPNTVIYNIL----IDSLCK---NNQVELALSLMEEMKVKEVRP----NTNTYNAMFK 697 (757)
Q Consensus 630 ~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~---~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~ 697 (757)
+.|. -++|+++++.+.+-. +-|...-|.. =..|.+ ...+.+-+++-+-+.+.|+.| +...-|.|.+
T Consensus 391 ~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 5555 788888888887721 1233222222 122322 223444444444455677777 3445566666
Q ss_pred H--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhchhc
Q 048807 698 G--LRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVS 753 (757)
Q Consensus 698 ~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (757)
+ +..+|++.++.-+-....+ +.|++.+|.-++-++....+++||.++++.+|..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 5 4678999998877666654 7898899998888888888999999999998853
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.022 Score=60.48 Aligned_cols=369 Identities=16% Similarity=0.152 Sum_probs=201.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF-DAP--------LEAASCNALLNALGREGDFKRMNQLFTEMKENDIE 326 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 326 (757)
.|.+..|..|...-.+.-.++-|+..|-+.... |++ .+...-.+=|.+| -|+|++|.++|-+|-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 578889999988888888888888888765442 111 0011111122222 4899999999999887642
Q ss_pred CccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC
Q 048807 327 PSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP 406 (757)
Q Consensus 327 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (757)
.|..+.+.|++-...++++.--... .-..-..+|+.+...+.....+++|.+.+....
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~-----dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------- 823 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDD-----DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------- 823 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 3566777888877766655321110 011224678899999999999999999888763
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 407 NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILIT 486 (757)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 486 (757)
+ -...+.++.+..++++-..+-+.+ +-+....-.+.+++.+.|.-++|.+.|-+- +.+ . +.+.
T Consensus 824 ~---~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p-k-----aAv~ 886 (1189)
T KOG2041|consen 824 D---TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP-K-----AAVH 886 (1189)
T ss_pred c---hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc-H-----HHHH
Confidence 1 123566666666666555444443 335666777888888888888887766432 211 1 2345
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhH--------------HHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH
Q 048807 487 AFCNVNNFQEAIKWFDDMSRAGCSADSVVY--------------FTLISGLCQAGRMNDASLVVSKLKEA----GFRPDI 548 (757)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~ 548 (757)
.|...+++.+|.++-+...- |.+.+. .--|..+.+.|++-+|-+++.+|.+. +.++-.
T Consensus 887 tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 56666777777766554321 111111 11234455667776777777666543 222211
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
.--..++.++. ..+..++.+-.++...+|...|... +...|-..++-.+.+..-. | .....|..|..-.
T Consensus 963 ~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-g--AEAyHFmilAQrq 1031 (1189)
T KOG2041|consen 963 LKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-G--AEAYHFMILAQRQ 1031 (1189)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-h--HHHHHHHHHHHHH
Confidence 11111111111 1223344444444444443222111 1222333333333332221 1 2334455555555
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
...|.++.|++.--.+..-..+-|...+|..+.-+-+....+.-.-+.|-++.
T Consensus 1032 l~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1032 LFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 66788888877654444323345666677766655555544444444444443
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00062 Score=60.60 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPN--TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
..+...|++++|...|+.+.. ....|. ......|...+...|++++|+..++..... ......+...++++.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCC
Confidence 334444444444444444444 111111 112223344444445555555554443221 122333444444555555
Q ss_pred CHHHHHHHHHH
Q 048807 704 MLDKAFKLMDR 714 (757)
Q Consensus 704 ~~~~A~~~~~~ 714 (757)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555555444
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00025 Score=73.08 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+.....+|+..+...++++.|+++|+++.+.+ |+ ....++..+...++-.+|.+++.+.+... +.+...+..-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455667788888899999999999999875 33 44557888888899999999999999763 445556666667
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
.|.+.++.+.|+++.+++.... |.+..+|..|..+|.+.|++++|+..+..+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-------PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7889999999999999999864 5667799999999999999999999998874
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00054 Score=60.95 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC
Q 048807 591 SFLSKSGNFSAARRVLKKMVKEGLVPT--VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN 668 (757)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 668 (757)
..+...|++++|...|+........|+ ......|...+...|++++|+..++.... -......+...++.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCC
Confidence 344444555555555555444331111 11222334444444555555554443222 1112223444444455555
Q ss_pred CHHHHHHHHHH
Q 048807 669 QVELALSLMEE 679 (757)
Q Consensus 669 ~~~~A~~~~~~ 679 (757)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555544443
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=1.9e-05 Score=50.41 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKENDIEPS 328 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 328 (757)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.011 Score=59.05 Aligned_cols=273 Identities=13% Similarity=0.053 Sum_probs=132.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
.+.+..++.+|+..+..+++.. +.++.-|..-+..+...|++++|.--.+.-. .-.+.......-.-.+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~----r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSV----RLKDGFSKGQLREGQC 126 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhhe----ecCCCccccccchhhh
Confidence 4556667777888888887763 5556666666777777788877776654432 1111122233334444
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhcCCHH
Q 048807 418 FCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL-CANAVTYTIL-ITAFCNVNNFQ 495 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~ 495 (757)
+...++..+|.+.++ +...+ ....|+..++.+..... .|....|-.| ..++...|+.+
T Consensus 127 ~~a~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhhHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 444555555555444 11111 01111111222111111 1222233322 23444556666
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcC
Q 048807 496 EAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVC-------------YNHLISGFCKKK 562 (757)
Q Consensus 496 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-------------~~~li~~~~~~g 562 (757)
+|.++--..++.+ ..+......-..++.-.++.+.|...|++.+..+ |+... +..-.+-..+.|
T Consensus 187 ~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 187 EAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred hHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 6665555555442 1122221111223334555666666666555442 22211 112223345667
Q ss_pred CHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048807 563 MLDKAYEVLQEMEDIG---MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDEAM 638 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 638 (757)
++..|.+.|.+.+..+ ..++...|........+.|+.++|+.--+..++. .+. ...|..-..++...+++++|.
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766542 2233444555555666677777777766666653 111 112222334445556677777
Q ss_pred HHHHHhhh
Q 048807 639 KIFKELSS 646 (757)
Q Consensus 639 ~~~~~~~~ 646 (757)
+-+++..+
T Consensus 342 ~d~~~a~q 349 (486)
T KOG0550|consen 342 EDYEKAMQ 349 (486)
T ss_pred HHHHHHHh
Confidence 77766655
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.84 E-value=0.00045 Score=60.24 Aligned_cols=99 Identities=7% Similarity=-0.073 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+....-.+...+...|++++|..+|+.....++. +...|..|..++...|++++|+..|......+ +.|...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3445556777888999999999999999998876 88999999999999999999999999999987 467889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 048807 338 RLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~ 358 (757)
++...|+.+.|++.|+.++..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998864
No 149
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.80 E-value=0.0084 Score=53.00 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC--CCCCCHHHH
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSS--NVSPNTVIY 657 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~p~~~~~ 657 (757)
.|+...-..|..+....|+..+|...|++...--+-.|......+.++....+++.+|...++++.+.. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 556666667778888888888888888888765445577777778888888888888888888877621 11233 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048807 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 658 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 728 (757)
..+...|...|+..+|..-|+...+. -|+...-......+.+.|+.++|..-+....+. +.-+..+|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~-~~r~~~H~r 231 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDT-AKRSRPHYR 231 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHhcchhHH
Confidence 56677788888888888888888874 455554444455567778777776655555432 233444444
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.78 E-value=4.6e-05 Score=48.58 Aligned_cols=33 Identities=48% Similarity=0.813 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKEVRPN 688 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 688 (757)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00045 Score=55.91 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
++..++..+...|++++|...++++.+..+. +...+..+...+...|++++|.+.|++..... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 3556778888999999999999999887644 55788889999999999999999999998875 445567888888999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 048807 341 KLYRADEALEVFEKMIAG 358 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~ 358 (757)
..|+.++|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999988764
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0061 Score=60.79 Aligned_cols=330 Identities=12% Similarity=0.010 Sum_probs=184.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (757)
.......+.+..++.+|+..+...++.... +..-|..-+..+...|++++|.--.++-.+.... ....+.-.-.++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhh
Confidence 344567788888999999999999987543 5666777777888888998887766665554221 22344555666666
Q ss_pred cCCHHHHHHHHHHHHHc----------------CCCCCHhhHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048807 491 VNNFQEAIKWFDDMSRA----------------GCSADSVVYFTLI-SGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNH 553 (757)
Q Consensus 491 ~g~~~~A~~~~~~m~~~----------------~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 553 (757)
.++..+|...++.-... .-+|.-..|..+- .++.-.|++++|...-...++.... +......
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHh
Confidence 77777777766532100 0001112222222 2345567888887777666665311 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHhC---CCCCC
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTL-------------ISFLSKSGNFSAARRVLKKMVKE---GLVPT 617 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~A~~~~~~m~~~---~~~p~ 617 (757)
-..++...++.+.|...|++.+..+ |+...-..+ ..-..+.|++..|.+.|.+.+.. +..|+
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 2334445777888888888887763 444322111 22234677888888888887764 23345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVKEVRP-NTNTYNAM 695 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 695 (757)
...|........+.|+.++|+.-.++..+ +.+.. ..|..-..++...++|++|.+-|++..+..-.+ ...++.-.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A 363 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREA 363 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 55666666677778888888887777665 22211 123333344555677888888888777642222 22344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHH-hcCCHHHHHHHHhh
Q 048807 696 FKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT--EWLS-EAGQTEKLKKFVQG 749 (757)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~--~~~~-~~g~~~~A~~~~~~ 749 (757)
..++-++.+ ..-.+++--.......|....|.-+. .... ..|.-.||+.-+++
T Consensus 364 ~~aLkkSkR-kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFke 419 (486)
T KOG0550|consen 364 QLALKKSKR-KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKE 419 (486)
T ss_pred HHHHHHhhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHH
Confidence 444433322 11222222222222345555565332 2222 23555666665554
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.70 E-value=6e-05 Score=47.68 Aligned_cols=33 Identities=45% Similarity=0.643 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048807 295 ASCNALLNALGREGDFKRMNQLFTEMKENDIEP 327 (757)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 327 (757)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.0011 Score=56.58 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--CccchHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL--EAASCNALLNALGREGDFKRMNQLFTEMKENDIE--PSVVTFGTII 336 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li 336 (757)
++..++..+.+.|++++|.+.|..+.+..+.. ....+..+...+.+.|++++|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 55668888999999999999999998865431 2457778999999999999999999999876311 1245677788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 048807 337 NRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..+.+.|+.++|...++++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88999999999999999999864
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.68 E-value=0.0011 Score=66.30 Aligned_cols=131 Identities=12% Similarity=0.099 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 295 ASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK-LYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
.+|..++....+.+..+.|.++|.+..+.+ .-+...|......-.. .++.+.|.++|+..++. ++.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-------f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-------FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-------HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------CCCCHHHH
Confidence 356666666666666777777777766432 2223334333333223 34555577777777665 46666777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNA---VTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
...++.+.+.|+.+.|..+|++. .....++. ..|...+..-.+.|+++.+.++.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~----i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERA----ISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH----CCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHH----HHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777776 22232222 46777777777777777777777766663
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.67 E-value=8.6e-05 Score=46.94 Aligned_cols=32 Identities=38% Similarity=0.617 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKEVRP 687 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 687 (757)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666655554
No 157
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.64 E-value=0.093 Score=53.17 Aligned_cols=146 Identities=21% Similarity=0.313 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH-HHHH
Q 048807 583 SVTYNTLISFLSKSGNFSAARRVLKKMVKEG-LVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI-YNIL 660 (757)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l 660 (757)
..+|..++..-.+..-++.|..+|-++.+.| ..+++..+++++.-++ .|+...|.++|+--... . ||... -+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f-~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--F-PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--C-CCchHHHHHH
Confidence 3566777777777777888888888888887 5677888888887654 57788888888765552 2 34333 3455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048807 661 IDSLCKNNQVELALSLMEEMKVKEVRPN--TNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLS 735 (757)
Q Consensus 661 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 735 (757)
+.-+...++-+.|..+|+..+.. +..+ ..+|..+++--..-|+...+..+=++|.+. -|-..+.....+.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 66667778888888888866543 2233 467888888777888888888888888763 454433333434333
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.0024 Score=54.50 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 048807 620 TYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIYNILIDSLCKNNQVELALSLMEEMKVKEV--RPNTNTYNAMF 696 (757)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l~ 696 (757)
++..++..+.+.|++++|.+.|..+.+...-.+ ....+..++.++.+.|++++|...|+++....- +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566666777777777776665211111 123455566777777777777777777665310 11134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 048807 697 KGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
.++.+.|+.++|.+.++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777777664
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.012 Score=58.99 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=59.1
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHH-HHH
Q 048807 377 IDGLCKV-GKQEEALGLIEQMRLRLQKGCMP--NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP-----NVV-TLN 447 (757)
Q Consensus 377 i~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~ 447 (757)
...|... |++++|.+.|++..........+ -..++..++..+.+.|++++|.++|++....-... +.. .+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3344444 66666666666653221111111 12344556666777777777777777666542211 111 122
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRKG--LCA--NAVTYTILITAFCN--VNNFQEAIKWFDDMS 505 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 505 (757)
..+-++...|++..|.+.+++..... +.. .......|+.++-. ...+.+++.-|+.+.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 23334455666666766666665442 111 12233444444432 123555555555444
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.59 E-value=0.0011 Score=53.48 Aligned_cols=93 Identities=30% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 412 (757)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++... ...+.+..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 72 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKAL----ELDPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCcchhHHH
Confidence 334444555555555555555555432 2233445555555555555555555555542 11223334455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
.+...+...|+.++|...+....+
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHc
Confidence 555555555555555555555443
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.0017 Score=67.22 Aligned_cols=93 Identities=15% Similarity=-0.009 Sum_probs=82.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
....+...|++++|++.|+++++.++. +...|..+..+|.+.|++++|+..++++++.+ +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 355677889999999999999998765 78899999999999999999999999999875 4467788888999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 048807 345 ADEALEVFEKMIAGK 359 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~ 359 (757)
+++|+..|++.++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999864
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0026 Score=58.55 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
....+..+...|.+.|++++|...|+++.+.++.+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455678888899999999999999999987654432 4688999999999999999999999999864 3345667777
Q ss_pred HHHHHhcCC
Q 048807 336 INRLCKLYR 344 (757)
Q Consensus 336 i~~~~~~g~ 344 (757)
...+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777877776
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.0054 Score=66.44 Aligned_cols=70 Identities=14% Similarity=0.007 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYIS 726 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 726 (757)
+...|..+.-.....|++++|...++++++. .|+...|..++.++...|+.++|.+.++++.. +.|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 4456666665666667777777777777774 46677777777777777777777777777765 3555444
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.023 Score=56.97 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPN-----SV-TYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
+..++..+.+.|++++|.++|+++.......+ .. .+...+-.+...||+..|...+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555556666666666665544321111 10 111222233445566666666665554
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0025 Score=66.02 Aligned_cols=86 Identities=9% Similarity=0.014 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
...|++++|+..|+++.+ ..+.+...|..+..+|.+.|++++|+..+++++... +.+...|..++.+|...|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 344445555555544444 111233344444444555555555555555554431 12333444444455555555555
Q ss_pred HHHHHHHHH
Q 048807 709 FKLMDRMIE 717 (757)
Q Consensus 709 ~~~~~~~~~ 717 (757)
+..|+++++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555543
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0011 Score=63.38 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=88.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCC
Q 048807 591 SFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQ 669 (757)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 669 (757)
.-..+.+++++|+..|.++++.. +-|.+-|..-..+|++.|.++.|++-.+.... +.|+. .+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 34567788888888888888853 23666777778888888888888888887776 44543 478888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHH---HHHHHHHHHHHcCCCCCHH
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYNAMFKGL-RQKNMLD---KAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~---~A~~~~~~~~~~g~~p~~~ 725 (757)
+++|++.|++.++ +.|+..+|..=+... .+.+... .+..-++-....|..||..
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 8888888888887 578777775544433 2223322 3334444443345556653
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.0013 Score=65.72 Aligned_cols=129 Identities=17% Similarity=0.121 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR-EGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
.+|..+++..-+.+..+.|..+|.++.+.+. .+..+|......-.+ .++.+.|.++|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4788999999999999999999999996543 244555555555333 57777799999999986 45677889999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPD---VIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+.+.|+.+.|..+|++.+.. ++++ ...|...++.-.+.|+.+.+.++.+++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-------LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999875 2333 3589999999999999999999998885
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.51 E-value=0.00015 Score=57.52 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=59.4
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAP-LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALE 350 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 350 (757)
.|+++.|+.+++++.+..+. ++...+..+..+|.+.|++++|.+++++ .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57889999999999887653 2455666688999999999999999988 3322 1233444455778889999999999
Q ss_pred HHHHH
Q 048807 351 VFEKM 355 (757)
Q Consensus 351 ~~~~~ 355 (757)
.|++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88763
No 169
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.51 E-value=0.0016 Score=67.45 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 543 GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI--GMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVT 620 (757)
Q Consensus 543 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 620 (757)
+.+-+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456677777888888888888888888887754 1112234556889999999999999999998888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc
Q 048807 621 YGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN 667 (757)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 667 (757)
++.|++.+.+.|++..|.++...|.. .....+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888877 45556666766666666655
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0016 Score=59.73 Aligned_cols=95 Identities=17% Similarity=0.051 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (757)
...|..++..+...|++++|...|++.+.....+ ...++..+...+...|++++|+..+++++... +....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHH
Confidence 4566667777777788888888888776553222 12467777778888888888888888877653 33445
Q ss_pred HHHHHHHHHH-------HcCCHHHHHHHHHH
Q 048807 372 IFNTLIDGLC-------KVGKQEEALGLIEQ 395 (757)
Q Consensus 372 ~~~~li~~~~-------~~g~~~~A~~~~~~ 395 (757)
++..+...+. +.|++++|...+++
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5566666665 55565555444443
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.48 E-value=0.14 Score=51.08 Aligned_cols=251 Identities=14% Similarity=0.151 Sum_probs=134.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhH
Q 048807 456 HGRINSAVEFFQEVTRKGLCANAVTYTI----LITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMND 531 (757)
Q Consensus 456 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 531 (757)
.|++++|.+-|+.|... +.+--. |.-.--+.|+.+.|..+-+.....- +.-...+...+...+..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 45666666666665542 222111 1111224555555555555544432 2234455666666666666666
Q ss_pred HHHHHHHHHHCC-CCCCHHH--HHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHH
Q 048807 532 ASLVVSKLKEAG-FRPDIVC--YNHLISGF---CKKKMLDKAYEVLQEMEDIGMTPNSVTYN-TLISFLSKSGNFSAARR 604 (757)
Q Consensus 532 A~~~~~~~~~~g-~~~~~~~--~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~ 604 (757)
|+++.+.-.... +.++..- -..|+.+- .-..+...|...-.+..+. .||.+.-- .-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 666665543321 2222221 11121111 1123455555555555544 55544332 23456778888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 605 VLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIYNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 605 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
+++.+-+....|+.. .+..+.+.|+. +..-+++..+...++| +......+..+-...|++..|..--+....
T Consensus 285 ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 285 ILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred HHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 888888765445432 12233444542 2333333322222334 345666677777788888888777766665
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC
Q 048807 684 EVRPNTNTYNAMFKGLRQ-KNMLDKAFKLMDRMIEHACHP 722 (757)
Q Consensus 684 g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p 722 (757)
..|....|..|.+.-.. .|+-.++...+-+.++..-+|
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 36777777777776644 488888888888887654444
No 172
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.47 E-value=0.0038 Score=61.92 Aligned_cols=288 Identities=17% Similarity=0.134 Sum_probs=150.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCC----HhHHHHHHHHHHHcCCHHHHHHHHHHH--HHhhcCCCCCCHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPD----VIIFNTLIDGLCKVGKQEEALGLIEQM--RLRLQKGCMPNAVT 410 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~~ 410 (757)
.-+|+.|+......+|+.+++.| ..| ...|..|.++|.-.+++++|+++...= ..+......-...+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-------TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-------TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-------chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 45788888888888888888766 223 234666777777777888888764321 00000001112233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH----HHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 411 YNCLINGFCKSGNIEKGLELFH----LMKQEGV-TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILI 485 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~----~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 485 (757)
-..|...+--.|.+++|+-.-. -..+.|- ......+..+...|...|+--... .-.+.|-.++.++ .
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~-~--- 169 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT-S--- 169 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-H---
Confidence 3445555555666776654322 1222221 112344555666665554321100 0000111111111 0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----cCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCHHHHHHHH
Q 048807 486 TAFCNVNNFQEAIKWFDDMSR----AGC-SADSVVYFTLISGLCQAGRMNDASLVVSKLKE----AGFR-PDIVCYNHLI 555 (757)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~-~~~~~~~~li 555 (757)
.++.|.+.|.+-++ .|- -.--..|..|...|.-.|+++.|+...+.-++ -|-+ .....+..+.
T Consensus 170 -------al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlg 242 (639)
T KOG1130|consen 170 -------ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLG 242 (639)
T ss_pred -------HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence 12233333322111 110 01123456666666677788877766554222 2211 1233566777
Q ss_pred HHHHhcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 048807 556 SGFCKKKMLDKAYEVLQEME----DIGM-TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE-----GLVPTVVTYGALI 625 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li 625 (757)
+++.-.|+++.|.+.|+... +.|- .....+..+|...|.-..++++|+.++.+-+.. ...-....+.+|.
T Consensus 243 N~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLg 322 (639)
T KOG1130|consen 243 NCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLG 322 (639)
T ss_pred hhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 77778888888888777643 2221 122345566777777777888888877654431 1112455677888
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 048807 626 HAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~ 646 (757)
.+|...|..++|+.+.+...+
T Consensus 323 na~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 323 NAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 888888888888777665443
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.47 E-value=0.0019 Score=66.99 Aligned_cols=126 Identities=10% Similarity=0.146 Sum_probs=90.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 048807 401 QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE--GVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA 478 (757)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 478 (757)
..+.+-.......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.++..=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 4444556666667777777777788888887777754 22222345568888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048807 479 VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA 526 (757)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 526 (757)
.++|.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888877766666666665555555554
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.46 E-value=0.0056 Score=53.53 Aligned_cols=92 Identities=11% Similarity=-0.003 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
.+...+...|++++|..+|+-+...+ +.+..-|..|..++-..|++++|+..|.......+ .|...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 33444555666666666666655554 33444555555556666666666666666655442 24455555556666666
Q ss_pred CHHHHHHHHHHhhh
Q 048807 633 HVDEAMKIFKELSS 646 (757)
Q Consensus 633 ~~~~A~~~~~~~~~ 646 (757)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.46 E-value=0.059 Score=52.40 Aligned_cols=177 Identities=8% Similarity=0.062 Sum_probs=97.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTY---NTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
....+...|++++|.+.|+++.... |-..... -.++.+|.+.+++++|...+++.++....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556677777777777777653 2222221 34556667777777777777777765322222222222222221
Q ss_pred --cC---------------C---HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 631 --NG---------------H---VDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTN 690 (757)
Q Consensus 631 --~g---------------~---~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 690 (757)
.+ + ..+|+..|+++.+ -|=...-..+|...+..+.+. - ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~---l-a~ 176 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDR---L-AK 176 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHH---H-HH
Confidence 11 1 2344455555544 222222344554444444321 0 01
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIEH--ACHPDYISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
.--.+..-|.+.|.+..|+.-++.+++. +..........++.++.+.|..++|.++.+.+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124556688888888888888888875 222233666678888888898888888776553
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0015 Score=62.56 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=83.2
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChh
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRAD 346 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 346 (757)
+-+.+.+++++|++.|.++++..+. |.+.|..-..+|.+.|.++.|++-.+..+.-+ +--..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3456789999999999999998765 88888888999999999999999999988865 334678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcccccCCHhHHHH
Q 048807 347 EALEVFEKMIAGKETAEISVEPDVIIFNT 375 (757)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
+|++.|.+.++ +.|+-.+|-.
T Consensus 167 ~A~~aykKaLe--------ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--------LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--------cCCCcHHHHH
Confidence 99999999988 4566655543
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00026 Score=56.13 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 048807 668 NQVELALSLMEEMKVKEV-RPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEAGQTEKLKK 745 (757)
Q Consensus 668 g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~ 745 (757)
|++++|+.+++++.+... .++...+..++.++.+.|++++|+.++++ .+ ..|+. .....++.++.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 444555555555544211 01222333344455555555555555544 11 12222 222233444444555555555
Q ss_pred HHh
Q 048807 746 FVQ 748 (757)
Q Consensus 746 ~~~ 748 (757)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.003 Score=62.69 Aligned_cols=269 Identities=16% Similarity=0.121 Sum_probs=160.5
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHH--HHC--CC-CCccchHHHHHH
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDAPLEA----ASCNALLNALGREGDFKRMNQLFTEM--KEN--DI-EPSVVTFGTIIN 337 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~-~p~~~~~~~li~ 337 (757)
.-+||.|+.+....+|+.+++.|.. |. ..|..|..+|.-.+++++|+++...= +.+ |- .-...+-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578889999999999999888755 43 45667777788888888888764321 111 10 012223334455
Q ss_pred HHHhcCChhHHHHHHHHHHh----CCCCCcccccCCHhHHHHHHHHHHHcCCH--------------------HHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIA----GKETAEISVEPDVIIFNTLIDGLCKVGKQ--------------------EEALGLI 393 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~ 393 (757)
.+--.|.+++|+....+-+. .|. -.....++..|...|...|+. +.|.++|
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgD-----rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGD-----RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhH-----HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 55556777777655443221 110 012234555666666655532 2333333
Q ss_pred HHHHHhhc-CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 048807 394 EQMRLRLQ-KG-CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ----EGVT-PNVVTLNTLVDGMCRHGRINSAVEFF 466 (757)
Q Consensus 394 ~~~~~~~~-~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~ 466 (757)
.+-..... .| .-.--..|..|...|.-.|+++.|+...+.-+. .|-. .....+..+.+++.-.|+++.|.+.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 32110000 00 001123466666777778899999877664332 2311 12356778888888899999999888
Q ss_pred HHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 048807 467 QEVTR----KGLC-ANAVTYTILITAFCNVNNFQEAIKWFDDMSRA-----GCSADSVVYFTLISGLCQAGRMNDASLVV 536 (757)
Q Consensus 467 ~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 536 (757)
+.... .|-. .......+|...|.-..++++|+.++.+-+.. +..-...++.+|..+|...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 76433 2221 23445666788888888888998887654321 11235567888999999999999988777
Q ss_pred HHHHH
Q 048807 537 SKLKE 541 (757)
Q Consensus 537 ~~~~~ 541 (757)
+.-++
T Consensus 339 e~hl~ 343 (639)
T KOG1130|consen 339 ELHLR 343 (639)
T ss_pred HHHHH
Confidence 65543
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.44 E-value=0.00013 Score=44.89 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+||.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.032 Score=49.50 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHH
Q 048807 614 LVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP---NTN 690 (757)
Q Consensus 614 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~ 690 (757)
.-|++.....|..+....|+..||...|++... --..-|......+.++....++..+|...++++.+.. | ++.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPD 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCC
Confidence 358888889999999999999999999999887 3445577788899999999999999999999998742 3 233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
+-..+...|...|+..+|..-|+.++. .-|+...-......+.+.|+.+++...+..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 455677889999999999999999996 467776666667788899988887766544
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00017 Score=44.37 Aligned_cols=29 Identities=41% Similarity=0.666 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKE 684 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 684 (757)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.021 Score=60.11 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCc--chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHH
Q 048807 148 INSATLLIRFFGKVSMYDYSLLVYNELDNNLRNT--HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVF 225 (757)
Q Consensus 148 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~ 225 (757)
+..+..-...|...|.+++|.++-. +.+ .-|-.|..--...=+++-|++.|.+....
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------------- 614 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRVRDL--------------- 614 (1081)
T ss_pred cccccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---------------
Confidence 3344455566777787777755311 111 12555555555555667777777665331
Q ss_pred HHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 048807 226 YALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHV 284 (757)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (757)
..-+.+.-++++.+.|-.|+... +...++-.|++.+|-++|.+
T Consensus 615 -------------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 -------------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred -------------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 00122223445566666666543 44556666777777776654
No 183
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.38 E-value=0.0069 Score=55.69 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc--cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPS--VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
....+..+...+...|++++|...|++.++.+..+. ...+..+...+.+.|++++|+..++++++.. +.+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~ 106 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-------PKQP 106 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccH
Confidence 456788888899999999999999999987643222 3578888899999999999999999999864 4567
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
..+..+...|...|+...+..-++... ..+++|.+++++....+ |+ .|..++
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~------------------------~~~~~A~~~~~~a~~~~--p~--~~~~~~ 158 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAE------------------------ALFDKAAEYWKQAIRLA--PN--NYIEAQ 158 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHH------------------------HHHHHHHHHHHHHHhhC--ch--hHHHHH
Confidence 778888888888888766655544432 12566677777766642 22 244555
Q ss_pred HHHHHcCC
Q 048807 451 DGMCRHGR 458 (757)
Q Consensus 451 ~~~~~~g~ 458 (757)
..+...|+
T Consensus 159 ~~~~~~~~ 166 (172)
T PRK02603 159 NWLKTTGR 166 (172)
T ss_pred HHHHhcCc
Confidence 55544443
No 184
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.38 E-value=0.2 Score=50.85 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=71.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 244 VGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 244 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+++-+++.+. |.|..+|-.||.-|..+|..++-.+++++|..-- +--..+|..-+.+-....+|.....+|.+.+..
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3666665543 7899999999999999999999999999997632 223568888888888889999999999999887
Q ss_pred CCCCccchHHHHHHHHH
Q 048807 324 DIEPSVVTFGTIINRLC 340 (757)
Q Consensus 324 g~~p~~~~~~~li~~~~ 340 (757)
.+ +...|...+.-..
T Consensus 106 ~l--~ldLW~lYl~YIR 120 (660)
T COG5107 106 SL--NLDLWMLYLEYIR 120 (660)
T ss_pred hc--cHhHHHHHHHHHH
Confidence 54 4555655554333
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.38 E-value=0.048 Score=53.04 Aligned_cols=182 Identities=13% Similarity=0.048 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAA--SCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
..-.....+.+.|++++|.+.|+.+....+..... ..-.++.+|.+.+++++|...|++.++....-....+...+.+
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 34345666778999999999999999876653222 2245678889999999999999999987422222334344444
Q ss_pred HHh--cC---------------C---hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 339 LCK--LY---------------R---ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRL 398 (757)
Q Consensus 339 ~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 398 (757)
.+. .+ + ..+|+..|+.+++. |=...-..+|...+..++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------------yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------------YPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------------CcCChhHHHHHHHHHHHHH
Confidence 331 11 1 13445555555553 3333334555555555532
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048807 399 RLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE--GVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVT 470 (757)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 470 (757)
++ ..--..+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.++...+.
T Consensus 173 ~l-------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 173 RL-------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11 111225677788999999999999999876 333345667788899999999999988776554
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.36 E-value=0.018 Score=62.40 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH
Q 048807 564 LDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKS--------GNFSAARRVLKKMVKEG-LVPTVVTYGALIHAFCVNGHV 634 (757)
Q Consensus 564 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~ 634 (757)
...|..+|++.++.. |.....|..+..++... .++..+.+...+..... ...+...|..+.-.....|++
T Consensus 358 ~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 358 LNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 445666666666553 22233333333322211 12334444444433321 233456677666666677888
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYN 693 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 693 (757)
++|...+++..+ +.|+...|..++..+...|+.++|.+.+++.... .|...+|.
T Consensus 437 ~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 437 DEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred HHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 888888888877 3367778888888888888888888888888774 56555543
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.31 E-value=0.0044 Score=56.81 Aligned_cols=27 Identities=15% Similarity=-0.106 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+|..+...|.+.|++++|+..+++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.21 E-value=0.013 Score=49.38 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=27.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCc--cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048807 302 NALGREGDFKRMNQLFTEMKENDIEPS--VVTFGTIINRLCKLYRADEALEVFEKMIA 357 (757)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 357 (757)
.++-..|+.++|..+|++....|.... ...+..+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555543322 22333444455555555555555555544
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.048 Score=57.51 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH-------
Q 048807 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI------- 656 (757)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~------- 656 (757)
.+...+...+.+...+.-|-++|.+|-+. ..+++.....+++++|+.+-++..+ ..||++.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLA 815 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhh
Confidence 34444444445555566666666665431 2344555666777777766665544 2333311
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 657 ----YNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 657 ----~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
|.-.-.+|-++|+-.||..+++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 11122344455666666666666543
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.0016 Score=48.47 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=44.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+...+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677888888888888888887644 6778888888888888888888888888765
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.015 Score=56.21 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc-C--ChhHHHHHHHHHHhCCCCCcccccCC
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL-Y--RADEALEVFEKMIAGKETAEISVEPD 369 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g--~~~~A~~~~~~~~~~~~~~~~~~~~~ 369 (757)
|...|-.|...|.+.|++..|..-|....+.. ++|...+..+...+... | ...++..+|+++++.+ +.|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-------~~~ 226 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-------PAN 226 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-------Ccc
Confidence 44444444444444444444444444444432 22333333333322211 1 2233444444444443 334
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 370 VIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
+.+...|...+...|++.+|...++.|
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 444444444444444444444444444
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.13 E-value=0.0019 Score=48.84 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN-MLDKAFKLMDRMIE 717 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 717 (757)
+..+|..++..+.+.|++++|+..|++.++.. +.+...|..+..++.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666777777777777777777776642 224456666666777777 57777777776665
No 193
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.13 E-value=0.0059 Score=49.40 Aligned_cols=81 Identities=11% Similarity=0.190 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHCCCCCccch
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDA-PLEAASCNALLNALGREG--------DFKRMNQLFTEMKENDIEPSVVT 331 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~ 331 (757)
+....|.-+...+++..-..+|+.+.+.|+ .|++.+|+.++.+.++.. +.-+++.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566677777999999999999999999 799999999998887653 23467899999999999999999
Q ss_pred HHHHHHHHHh
Q 048807 332 FGTIINRLCK 341 (757)
Q Consensus 332 ~~~li~~~~~ 341 (757)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.12 E-value=0.035 Score=46.80 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=28.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKEGLVPT--VVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..++-..|+.++|+.+|++.+..|+... ...+..+...+...|++++|..++++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555555555555555544332 22333444455555555555555555544
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.12 E-value=0.0019 Score=48.77 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG-DFKRMNQLFTEMKE 322 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 322 (757)
..+|..+...+.+.|++++|+..|.+.++.++. ++..|..+..+|.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445666666666666777777766666666543 5666666666666666 56666666666654
No 196
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.41 Score=52.72 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=115.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL 339 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 339 (757)
...-++.+++...++.|+.+-.. .+..++ ........+.+.+.|++++|...|-+-+.. +.| ..++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 34567788888889998877544 222222 123444455667889999999988777653 122 3456677
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 048807 340 CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (757)
....+..+-..+++.+.+.+ -.+..--+.|+.+|.+.++.++-.++.+.. ..|.. ..-....+..+.
T Consensus 408 Ldaq~IknLt~YLe~L~~~g-------la~~dhttlLLncYiKlkd~~kL~efI~~~----~~g~~--~fd~e~al~Ilr 474 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKG-------LANSDHTTLLLNCYIKLKDVEKLTEFISKC----DKGEW--FFDVETALEILR 474 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcc-------cccchhHHHHHHHHHHhcchHHHHHHHhcC----CCcce--eeeHHHHHHHHH
Confidence 77777777788888888877 334455567899999999998887777665 22211 111345666777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048807 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEV 469 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 469 (757)
+.+-.++|.-+-.+... +......++ -..+++++|++++..+
T Consensus 475 ~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 475 KSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777777766554433 333444443 3568888998887654
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.09 E-value=0.0028 Score=47.19 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 660 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
++..+.+.|++++|...|++.++.. +-+...+..++.++.+.|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777777777777653 22455666677777777777777777777765
No 198
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.04 E-value=0.61 Score=49.65 Aligned_cols=134 Identities=13% Similarity=0.033 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...|+.||.---...+.+.+..+++.++..- |.----|-.....=.+.|..+.+.++|++-+.. ++-....|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 33445555544334444455556666665432 112334555555556666677777777666653 4444445555554
Q ss_pred HHH-hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 338 RLC-KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 338 ~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
.++ ..|+.+.-...|+.+...... --.....|-..|..-..++++.....+++++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~----dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGL----DFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhccc----chhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 333 345666666666666543200 11234456666666666666666666666663
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.00 E-value=0.0018 Score=48.78 Aligned_cols=61 Identities=16% Similarity=0.344 Sum_probs=44.3
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHH
Q 048807 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFG 333 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 333 (757)
.+.|++++|++.|+.+.+..+. +...+..++.+|.+.|++++|.++++++.... |+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHH
Confidence 4678888888888888877655 77777788888888888888888888887763 4433333
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.98 E-value=0.0033 Score=47.32 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEIL 730 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 730 (757)
.+.|++++|+++|+++.... +-+...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35677777777777776642 235566666777777777777777777777653 5554444433
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.35 Score=45.68 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-----
Q 048807 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTL----- 519 (757)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----- 519 (757)
+.+.++..+.-.|.+.-....+.++++...+.++.....|+++-.+.|+.+.|...|++..+..-..+..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 455566666666777777777777777665666777777777777777777777777765543222222222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 520 ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI 577 (757)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (757)
...|.-.+++.+|...+.++...+. .|+...|.-.-+..-.|+..+|.+..+.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2233344455555555555544421 13333333333333345555555555555554
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.02 Score=52.53 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 546 PDIVCYNHLISGFCK-----KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK 595 (757)
Q Consensus 546 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 595 (757)
.+..+|..+++.|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 355666666666653 35666666667777777777777777777776654
No 203
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.84 Score=49.76 Aligned_cols=331 Identities=11% Similarity=0.063 Sum_probs=165.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI--EKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
.+|+-+...+.+..|.++-..+. .. ...+...|......+.+..+. +++++..++=..... -...+|..+..-
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~---~p-~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLN---LP-ESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARR 516 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhC---Cc-cccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHH
Confidence 45777888889999999888774 11 111255677777777776422 233332222222212 245578888887
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCA----NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR 528 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 528 (757)
....|+.+-|..+++.=...+... +..-+..-+.-..+.|+.+-...++-.+...- +...+ +....+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l------~~~l~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL------FMTLRN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH------HHHHHh
Confidence 888999999888765432221110 00011122222333444444433333333210 11111 111233
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHH----hCCCCCCHHHHHHHHHHHHHcCCH---H
Q 048807 529 MNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVL-QEME----DIGMTPNSVTYNTLISFLSKSGNF---S 600 (757)
Q Consensus 529 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~----~~~~~~~~~~~~~li~~~~~~g~~---~ 600 (757)
...|..+|.+..++. |.. .+-+.|....+...+-.+. +... ..+..|+ .......+.+.... +
T Consensus 588 ~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred chhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 445555665544421 111 1222232222222222111 1100 1121222 22333444443321 1
Q ss_pred HHH-------HHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 601 AAR-------RVLKKMVK-EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVEL 672 (757)
Q Consensus 601 ~A~-------~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 672 (757)
+|. .+.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.+- ||-..|-.-+.+++..+++++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHH
Confidence 111 11122211 12222222333444556677888888877666443 777778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 048807 673 ALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQ 748 (757)
Q Consensus 673 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (757)
-.++-+.+. .+.-|.-++.+|.+.|+.+||.+++-+.-. . + -.+.+|.+.|++.+|.+..-
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--l-~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--L-Q------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC--h-H------HHHHHHHHhccHHHHHHHHH
Confidence 776665543 244566677888888888888888776631 1 1 35566777777777766543
No 204
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.94 E-value=0.014 Score=47.25 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=25.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc
Q 048807 414 LINGFCKSGNIEKGLELFHLMKQEGV-TPNVVTLNTLVDGMCRH 456 (757)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~ 456 (757)
.|.-+...+++.....+|+.++..|+ .|+..+|+.++.+.++.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R 74 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKR 74 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Confidence 34444455666666666666666666 66666666666655543
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.022 Score=55.18 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCccchH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG---DFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
|.|..-|-.|...|.+.|+++.|...|.+..+..++ +...+..+..++.... ...++..+|++++..+ +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 779999999999999999999999999999998765 8888888887766443 4568999999999986 4567777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..|...+...|++.+|...++.|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777788999999999999999999864
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.98 Score=49.27 Aligned_cols=346 Identities=14% Similarity=0.149 Sum_probs=188.2
Q ss_pred HCCCCCccchH-----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 322 ENDIEPSVVTF-----GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 322 ~~g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
.-|++.+..-| ..+|+-+...+.+..|+++-..+...- ......+.....-+.+..+.. -.++++.+
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-------~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I 496 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-------SQGDRVLLEWARRKIKQSDKM-DEEVLDKI 496 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-------ccccHHHHHHHHHHHhccCcc-chHHHHHH
Confidence 34555544444 346777788889999999888774321 112566777777777764321 12233333
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 397 RLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVT----PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
..+.... .-...+|..+.......|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++..+...
T Consensus 497 ~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 497 DEKLSAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred HHHhccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3221222 245668888898888999999998887632211100 01111222233333444444444444333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHH-HHHH----HCCCCCC
Q 048807 473 GLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVV-SKLK----EAGFRPD 547 (757)
Q Consensus 473 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~----~~g~~~~ 547 (757)
- +...+ .....+...|..+|.+..+.. |.. .+-+.|-+..+...+-.+. +... ..|..|+
T Consensus 576 ~---~~s~l------~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~ 640 (829)
T KOG2280|consen 576 L---NRSSL------FMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA 640 (829)
T ss_pred H---HHHHH------HHHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh
Confidence 0 11111 111223445666666655532 211 1222222222222221111 1100 1122233
Q ss_pred HHHHHHHHHHHHhcCCHH---HH-------HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 548 IVCYNHLISGFCKKKMLD---KA-------YEVLQEMED-IGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP 616 (757)
Q Consensus 548 ~~~~~~li~~~~~~g~~~---~A-------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 616 (757)
.......+.+..... +| ..+.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.. -|
T Consensus 641 ---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ip 713 (829)
T KOG2280|consen 641 ---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IP 713 (829)
T ss_pred ---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Cc
Confidence 233344444433311 11 122222221 1212222344555666778899999998887775 47
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 617 TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
|...|..-+.+++..+++++-+++-+.... +.-|.-.+.+|.+.|+.+||.+++-+... .. -.+
T Consensus 714 dKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv 777 (829)
T KOG2280|consen 714 DKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKV 777 (829)
T ss_pred chhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHH
Confidence 888898889999999999997777655432 34577788899999999999999877532 21 567
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 048807 697 KGLRQKNMLDKAFKLMDR 714 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~ 714 (757)
.+|.+.|++.+|.+..-+
T Consensus 778 ~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 778 KAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhccHHHHHHHHHH
Confidence 889999999999876443
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.85 E-value=0.23 Score=46.97 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
.....+...|++++|.+.|+.+... -.+.+--......++.++.+.|++++|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~-~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDR-YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555667777777777776532 1111222344555666667777777777777766654
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.78 E-value=0.2 Score=47.30 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQEGVT--PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
+-.....+...|++.+|.+.|+.+...-.. --....-.++.++.+.|++++|...+++.++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566777788888887777765211 11234555667777777777777777776665
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.77 E-value=0.035 Score=51.02 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 580 TPNSVTYNTLISFLSK-----SGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
..+..+|..+++.|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+. -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 4577888888888764 36777777788888888888899999988887654 2221 011111110
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
.-| -.+-+-|++++++|...|+-||.+++..++..+.+.+.
T Consensus 113 -------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 12345567777777777777777777777777655443
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.69 E-value=0.028 Score=55.10 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---ccchHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEP---SVVTFG 333 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~ 333 (757)
...|..-+..+.+.|++++|+..|+.+++..|... ..++..+...|...|++++|...|+.+++.- +. ....+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHH
Confidence 44566666666778999999999999999865422 4678889999999999999999999999762 21 234455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
.++..+...|+.++|.+.|+.+++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667788999999999999999885
No 211
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.68 E-value=1.2 Score=47.62 Aligned_cols=185 Identities=13% Similarity=0.072 Sum_probs=109.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 512 DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLIS 591 (757)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 591 (757)
+..+|..-+.--...|+.+.+.-+|+...-.- ..-...|-..+......|+.+-|..++....+..++....+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 44677777777788888888888888766431 11122344455555555888888877777666544333333222222
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHhhhcCCCCCCHHHHHHHHHH----
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVPTVV-TYGALIHAFCVNGHVDEAM---KIFKELSSSSNVSPNTVIYNILIDS---- 663 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~p~~~~~~~li~~---- 663 (757)
..-..|+++.|..+++.....- |+.+ .-..-+....+.|..+.+. .++....+ ... +..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~--~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE--NNGILEKLYVKFARL 449 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc--CcchhHHHHHHHHHH
Confidence 2344678888888888888763 4432 2223345556777777777 44433333 111 11122222211
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 664 -LCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 664 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
+.-.++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22357788888888888875 4666777777777766554
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.62 E-value=1 Score=46.17 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=35.3
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 656 IYNILIDS--LCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 656 ~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.-|.|.++ +..+|++.++...-..+.+ +.|++.+|..++-++....++++|.+++..+
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34444433 3456677776655555544 4667777777766666667777777766654
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.67 Score=43.88 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHH-----HHHH
Q 048807 588 TLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYN-----ILID 662 (757)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~li~ 662 (757)
.++..+.-.|.+.-...++.+.++...+.+......|+..-.+.|+.+.|...|++..+..+ .-|..+.+ ....
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhh
Confidence 34444444445555555555555544344445555555555555555555555554433111 11211222 1222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 663 SLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.|.-++++.+|...|.+....+ +.|+..-|.-.-++.-.|+..+|++.++.|++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333445555555555554432 22333333333333344555555555555554
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.58 E-value=0.012 Score=44.89 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
..|.+.+++++|+++++++.+.++. +...|......+.+.|++++|.+.|++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4677788888888888888887655 77777778888888888888888888887764
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.57 E-value=0.033 Score=49.03 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=79.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
..--+-..|++++|..+|.-+...++. +..-|..|...+-..+++++|...|......+ .-|...+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 444556899999999999999988766 78889999999999999999999999887765 3567777778899999999
Q ss_pred hhHHHHHHHHHHhC
Q 048807 345 ADEALEVFEKMIAG 358 (757)
Q Consensus 345 ~~~A~~~~~~~~~~ 358 (757)
.+.|+..|+.++..
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.53 E-value=0.047 Score=53.56 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 048807 621 YGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCKNNQVELALSLMEEMKVKE--VRPNTNTYNAMFK 697 (757)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~ 697 (757)
|...+..+.+.|++++|...|+.+.+.+.-.+- ...+..++..|...|++++|...|+.+.+.. -+.....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444443344556677777777666652211100 1345566667777777777777777776531 0112344445556
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 048807 698 GLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~ 718 (757)
++...|+.++|.++|++.++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666777777777777777653
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.53 E-value=1 Score=45.15 Aligned_cols=292 Identities=17% Similarity=0.146 Sum_probs=188.4
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHH--H
Q 048807 373 FNTLIDGLC--KVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING--FCKSGNIEKGLELFHLMKQEGVTPNVVT--L 446 (757)
Q Consensus 373 ~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~ 446 (757)
|..|-.++. -.|+-..|.++-.+.. +-+..|......++.+ -.-.|+++.|.+-|+.|... |.... +
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~----~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGL 157 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARAS----KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGL 157 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHH----hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhH
Confidence 444444444 3678888888877763 2233444444444443 34579999999999999873 22221 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhh--HHHHHHHH
Q 048807 447 NTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAG-CSADSVV--YFTLISGL 523 (757)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~li~~~ 523 (757)
..|.-.--+.|..+.|.++-+..-..-.. -...+.+.+...|..|+++.|+++.+.-.... +.++..- -..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 23333345689999999888887765333 45677888999999999999999998765532 2333321 12222221
Q ss_pred H---hcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 524 C---QAGRMNDASLVVSKLKEAGFRPDIV-CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNF 599 (757)
Q Consensus 524 ~---~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 599 (757)
. -.-+...|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+.. |....+.. ..+.+.|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd- 309 (531)
T COG3898 237 AMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD- 309 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC-
Confidence 1 123456666666555554 55644 23344578899999999999999999884 55544432 23345554
Q ss_pred HHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 048807 600 SAARRVLKKMVKE-GLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK-NNQVELALSL 676 (757)
Q Consensus 600 ~~A~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~ 676 (757)
.+..-+++..+. .++| +..+...+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++...
T Consensus 310 -ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 310 -TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred -cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 333333332211 1234 566777778888888999888877766654 56888889888887654 4999999999
Q ss_pred HHHHHhC
Q 048807 677 MEEMKVK 683 (757)
Q Consensus 677 ~~~m~~~ 683 (757)
+-+....
T Consensus 386 lAqav~A 392 (531)
T COG3898 386 LAQAVKA 392 (531)
T ss_pred HHHHhcC
Confidence 9998864
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.45 E-value=1.2 Score=45.08 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 520 ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNF 599 (757)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 599 (757)
+.-+...|+...|.++-.+.. -|+...|-..+.+++..++|++-.++... . ..+.-|..++..|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCH
Confidence 333444444444444433332 23444444445555555555444432211 1 1223444444444444544
Q ss_pred HHHHHHHHH
Q 048807 600 SAARRVLKK 608 (757)
Q Consensus 600 ~~A~~~~~~ 608 (757)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 444444443
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.38 E-value=1.1 Score=46.03 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQEG---VTPNVVTLNTLVDGMCR---HGRINSAVEFFQEVTRKGLCANAVTYTIL 484 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 484 (757)
...++-.|....+++..+++.+.+.... +.-....-...+-++.+ .|+.++|++++..+......+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345555777777777777777776541 11111222233344455 67777777777775555555566666666
Q ss_pred HHHH
Q 048807 485 ITAF 488 (757)
Q Consensus 485 i~~~ 488 (757)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 5544
No 220
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.36 E-value=1.9 Score=49.80 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 048807 481 YTILITAFCNVN--NFQEAIKWFDDMSR 506 (757)
Q Consensus 481 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 506 (757)
.-.+|..|.+.+ .+++|+....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 345666777666 56666666655553
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.34 E-value=0.025 Score=43.09 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048807 662 DSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 725 (757)
..|.+.+++++|.+++++++..+ +.+...|...+.++.+.|++++|.+.+++.++. .|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcH
Confidence 45677777888888887777752 335556666777777778888888888877764 45443
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.30 E-value=0.18 Score=44.74 Aligned_cols=58 Identities=21% Similarity=0.329 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLM 434 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (757)
...++..+...|++++|.++.+.+. ...|-|...|..+|.+|...|+..+|.+.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l----~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRAL----ALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH----HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344445555555555555555552 223444555555555555555555555555544
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.008 Score=46.68 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVK--EVR---PN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+|+.+...|...|++++|+..|++..+. ... |+ ..++..++.++...|++++|++++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777777777777777777776631 011 11 34566777777777777777777777654
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.14 Score=51.69 Aligned_cols=139 Identities=15% Similarity=0.107 Sum_probs=98.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 188 IDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLIT 267 (757)
Q Consensus 188 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~ 267 (757)
++.|.+.|++..|...|+++...= ... +..+.++..... ..-...++.|.-
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l----~~~-----------------~~~~~ee~~~~~--------~~k~~~~lNlA~ 265 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL----EYR-----------------RSFDEEEQKKAE--------ALKLACHLNLAA 265 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh----hcc-----------------ccCCHHHHHHHH--------HHHHHHhhHHHH
Confidence 678899999999999999876520 000 001111111110 112346777889
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch-HHHHHHHHHhcCCh-
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT-FGTIINRLCKLYRA- 345 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~- 345 (757)
+|.|.+++.+|++..+..+..++. |+-..-.=..+|...|+++.|+..|+++++. .|+... -+.|+.+--+..+.
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998865 8888888899999999999999999999997 455444 44454444444433
Q ss_pred hHHHHHHHHHHhC
Q 048807 346 DEALEVFEKMIAG 358 (757)
Q Consensus 346 ~~A~~~~~~~~~~ 358 (757)
+...++|..|...
T Consensus 343 ~kekk~y~~mF~k 355 (397)
T KOG0543|consen 343 EKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhc
Confidence 3457888888754
No 225
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.22 E-value=1.7 Score=44.15 Aligned_cols=109 Identities=12% Similarity=0.175 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
+.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..++|++-..+... +-++..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445666777888888887766653 46888889999999999999887765432 224577888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKK 608 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (757)
+.|...+|..+..++. +..-+..|.++|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888877621 24567788899999888765443
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.1 Score=52.70 Aligned_cols=125 Identities=18% Similarity=0.066 Sum_probs=95.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC-----CC---------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFD-----AP---------LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV 330 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~-----~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 330 (757)
-.+.|.+.|++..|..-|+++...= .+ .-..+++.+..+|.+.+++.+|++.....+..+ ++|+-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 3467889999999999988866431 11 113578888899999999999999999999987 67888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEE-ALGLIEQMR 397 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~ 397 (757)
..-.-..+|...|+++.|+..|+++++.. |.|-.+-+.|+.+-.+..+..+ ..++|..|-
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~-------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE-------PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999864 4555566666666655555444 366777774
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.12 E-value=0.26 Score=43.75 Aligned_cols=57 Identities=16% Similarity=0.322 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 447 NTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDM 504 (757)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (757)
..++..+...|++++|..+...+....+. +...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444445555555555555555554322 4455555555555555555555555544
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.10 E-value=1.2 Score=45.70 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK---SGNIEKGLELFHLMKQEGVTPNVVTLNTLVD 451 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (757)
.++-.|....+++...++.+.+..............-...+-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688999999999999998621001112223333445556667 8999999999999776666778889988887
Q ss_pred HHHHc---------CChHHHHHHHHHHHHC
Q 048807 452 GMCRH---------GRINSAVEFFQEVTRK 472 (757)
Q Consensus 452 ~~~~~---------g~~~~A~~~~~~~~~~ 472 (757)
.|-.. ..+++|...|.+.-+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 76431 1244555555554443
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.04 E-value=0.12 Score=53.39 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEA---ASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+.+...++.+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|...|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667889999999999999999999999999998755 33 46999999999999999999999999985
No 230
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.99 E-value=1.6 Score=41.86 Aligned_cols=201 Identities=16% Similarity=0.103 Sum_probs=115.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 513 SVVYFTLISGLCQAGRMNDASLVVSKLKEA-GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLIS 591 (757)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 591 (757)
...+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344555555556666666666555555431 122334455555555666666666666666666543222 122222222
Q ss_pred -HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHhc
Q 048807 592 -FLSKSGNFSAARRVLKKMVKEGL--VPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIYNILIDSLCKN 667 (757)
Q Consensus 592 -~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 667 (757)
.+...|+++.|...+.+...... ......+......+...++.+++...+....+ .... ....+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 56677777777777777654211 11233344444445667777777777777766 2222 355677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 668 NQVELALSLMEEMKVKEVRPN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 668 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
+++++|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788888888777764 333 344444455555666778888777777653
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=95.94 E-value=0.51 Score=41.77 Aligned_cols=88 Identities=14% Similarity=0.010 Sum_probs=50.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSA 601 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 601 (757)
-+...|++++|..+|+-+...++. +..-|..|..++-..+++++|...|......+ ..|...+-.....|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 344566666666666665554332 44445555566666666666666666554443 2344444455566666666666
Q ss_pred HHHHHHHHHh
Q 048807 602 ARRVLKKMVK 611 (757)
Q Consensus 602 A~~~~~~m~~ 611 (757)
|+..|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.90 E-value=0.083 Score=54.57 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 616 PTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT----VIYNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
.+...++.+..+|.+.|++++|+..|++..+ +.|+. .+|..+..+|.+.|+.++|+..+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567788888888888888888888888776 34553 34788888888888888888888888774
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.83 E-value=0.14 Score=43.61 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 048807 584 VTYNTLISFLSKSGNFSAARRVLKKMVK---------------EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSS 648 (757)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 648 (757)
.++..++.++++.|+++....+++..-. ....|+..+..+++.+|+..|++..|+++.+...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 4455555555555555555555543321 1234555555555555555555555555555555555
Q ss_pred CCCCCHHHHHHHHHH
Q 048807 649 NVSPNTVIYNILIDS 663 (757)
Q Consensus 649 ~~~p~~~~~~~li~~ 663 (757)
+++-+..+|..|+.-
T Consensus 83 ~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHH
Confidence 555455555555543
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=1.7 Score=40.90 Aligned_cols=203 Identities=12% Similarity=0.122 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHH
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTL 376 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (757)
|..-..+|....++++|...+.+..+- ...| ..+-... .-++.|.-+.+++.+. +--+..++--
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnn-rslfhAA------KayEqaamLake~~kl--------sEvvdl~eKA 97 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENN-RSLFHAA------KAYEQAAMLAKELSKL--------SEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc-ccHHHHH------HHHHHHHHHHHHHHHh--------HHHHHHHHHH
Confidence 344445566666677766666655531 1112 1211111 2234555555555442 2223445556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C--CCCCHHHHHHHHH
Q 048807 377 IDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE---G--VTPNVVTLNTLVD 451 (757)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p~~~~~~~li~ 451 (757)
..+|..+|..+-|-..+++.... .+. -+.++|+++|.+.... + ...-...+....+
T Consensus 98 s~lY~E~GspdtAAmaleKAak~-len------------------v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAKA-LEN------------------VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHHH-hhc------------------CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 66777777777777766665322 222 3334444444443221 0 0001122333444
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHH
Q 048807 452 GMCRHGRINSAVEFFQEVTRK----GLCANA-VTYTILITAFCNVNNFQEAIKWFDDMSRAG---CSADSVVYFTLISGL 523 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~ 523 (757)
.+.+...+++|-..+.+-... .-.++. ..|-..|-.|.-..++..|.+.+++-.+.+ -+.+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 555555565554443322110 001111 223344444555566777777776643322 123444555555554
Q ss_pred HhcCChhHHHHH
Q 048807 524 CQAGRMNDASLV 535 (757)
Q Consensus 524 ~~~g~~~~A~~~ 535 (757)
..|+.+++..+
T Consensus 239 -d~gD~E~~~kv 249 (308)
T KOG1585|consen 239 -DEGDIEEIKKV 249 (308)
T ss_pred -ccCCHHHHHHH
Confidence 34455554443
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.81 E-value=0.045 Score=42.38 Aligned_cols=64 Identities=25% Similarity=0.309 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM---PN-AVTYNCLINGFCKSGNIEKGLELFHLMK 435 (757)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (757)
.+++.+...|...|++++|+..|++.... ..... |+ ..+++.+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666665422 11111 11 3445555555555555555555555543
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.72 E-value=0.34 Score=47.88 Aligned_cols=229 Identities=13% Similarity=0.065 Sum_probs=122.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHh
Q 048807 488 FCNVNNFQEAIKWFDDMSRAG--CSADSVVYFTLISGLCQAGRMNDASLVVSK----LKEAG-FRPDIVCYNHLISGFCK 560 (757)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~g-~~~~~~~~~~li~~~~~ 560 (757)
+....+.++|+..+.+-+..- ...--.++..+..+.+..|.+++++..--. ..+.. -..-...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777877777655431 011223556666777777777776543221 11110 00012244455555555
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc
Q 048807 561 KKMLDKAYEVLQEMEDI-GMTP---NSVTYNTLISFLSKSGNFSAARRVLKKMVKEG-----LVPTVVTYGALIHAFCVN 631 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~ 631 (757)
..++.+++.+-..-... |..| -.....++..++...+.++++++.|+...+.- ......++..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555544433322 1111 11233445666666777888888887776531 111235677777777777
Q ss_pred CCHHHHHHHHHHhhh---cCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHH
Q 048807 632 GHVDEAMKIFKELSS---SSNVSPNTVIY-----NILIDSLCKNNQVELALSLMEEMKV----KEVRPN-TNTYNAMFKG 698 (757)
Q Consensus 632 g~~~~A~~~~~~~~~---~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~ 698 (757)
.++++|.-+..+..+ ..++..-..-| ..|.-++...|+...|.+.-++..+ .|-.+- ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888887776655433 22322111122 2334456666777777776666543 332221 1233466777
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 048807 699 LRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~ 716 (757)
|...|+.+.|..-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 777788888777777775
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=4.5 Score=45.05 Aligned_cols=178 Identities=14% Similarity=0.198 Sum_probs=109.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
...-++.+++...++-|..+.+.- +..++ ........+.+.+.|++++|.+.|-+-... +.|. .++
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 344567777888888888776654 11222 122333455566789999999888776643 3332 234
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMN 530 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (757)
.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 4555666667777788888888876 55566778899999998888776665543 2211 112344566666777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 531 DASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 531 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
+|..+-..... +..... -.+-..+++++|.+.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 77666554432 222222 2344567777777777654
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.19 Score=48.98 Aligned_cols=155 Identities=14% Similarity=0.059 Sum_probs=108.6
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHH----HHHHHHHhcCCh
Q 048807 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFG----TIINRLCKLYRA 345 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~ 345 (757)
...|+..+|-..++++++.- |.|..+++-.=.++..+|+.+.-...++++... ..+|.-.|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34688888888888888764 448888888889999999999999999888765 234442222 222344678999
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 346 DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIE 425 (757)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (757)
++|.+.-++..+.+ +.|..+-.++...+...|++.++.++..+-......+...-..-|-...-.+...+.++
T Consensus 192 ~dAEk~A~ralqiN-------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred hhHHHHHHhhccCC-------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 99999999998876 66788888889999999999999998876531111111111122333344556667888
Q ss_pred HHHHHHHH
Q 048807 426 KGLELFHL 433 (757)
Q Consensus 426 ~A~~~~~~ 433 (757)
.|+++|+.
T Consensus 265 ~aleIyD~ 272 (491)
T KOG2610|consen 265 KALEIYDR 272 (491)
T ss_pred HHHHHHHH
Confidence 88888864
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.56 E-value=2.3 Score=40.63 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIEHACHPDY---ISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
+..-|.+.|.+..|..-+++|++. ..-.. ..+..+..+|.+.|..++|.+.-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 344566667777777777777664 22111 34445556666666666666555443
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.56 E-value=2 Score=42.73 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHH---
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGM-----TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE----GLVPTVVTY--- 621 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~--- 621 (757)
+..++...+.++++++.|+...+.-. .....++..|...|.+..|+++|.-+..+..+. ++..-..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44445555555666666555443211 111234555666666666666665555544321 111101111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 622 --GALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT----VIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 622 --~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
.-|.-++...|++..|.+..++..+..-..-|. .....+.+.|...|+.+.|+.-|++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122334555566666655555544311111122 233455666666666666666655543
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.51 E-value=0.93 Score=38.08 Aligned_cols=139 Identities=12% Similarity=0.174 Sum_probs=79.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMK 639 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (757)
-.|..++..++..+..... +..-+|.+|--....-+-+-..+.++..-+ -.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 3567777777777776642 455555555444444444444444444332 1221 23445555444
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048807 640 IFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 640 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 719 (757)
.+-.+- .+.......++.+.++|+-++-.++..++... -.+++.....+..+|.+-|+..+|-+++.++.+.|
T Consensus 78 C~~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 78 CYAKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 443322 23345566778888899999988888888753 36788888889999999999999999999998887
Q ss_pred CC
Q 048807 720 CH 721 (757)
Q Consensus 720 ~~ 721 (757)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.51 E-value=0.8 Score=49.47 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHHcCCHHH
Q 048807 632 GHVDEAMKIFKELSSSSNVSPNTVIYN-ILIDSLCKNNQVELALSLMEEMKVK--EV-RPNTNTYNAMFKGLRQKNMLDK 707 (757)
Q Consensus 632 g~~~~A~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p~~~~~~~l~~~~~~~g~~~~ 707 (757)
...+.|.++++.+.+. . |+...|. .-...+...|++++|++.|++.... .. .-....+.-+.+++.-.++|++
T Consensus 247 ~~~~~a~~lL~~~~~~--y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--Y-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh--C-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3455566666665551 1 4433332 2234444556666666666654421 00 0112334445555556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCH-------HHHHHHHhhch
Q 048807 708 AFKLMDRMIEHACHPDYISMEILTEWL-SEAGQT-------EKLKKFVQGYA 751 (757)
Q Consensus 708 A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~-------~~A~~~~~~~~ 751 (757)
|.+.+.++.+. -.-...+|..+..+| ...|+. ++|.+++++.|
T Consensus 324 A~~~f~~L~~~-s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKE-SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66666666553 122233333333322 233555 55666665544
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=1.9 Score=41.93 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE 322 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 322 (757)
.....|++.+|...|.......+. +...-..++..|...|+.+.|..++..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 334455555555555555544433 334444445555555555555555554443
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=1.7 Score=42.30 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=107.9
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH
Q 048807 303 ALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK 382 (757)
Q Consensus 303 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 382 (757)
.....|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+.... -.........-|..+.+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~------~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA------QDKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc------hhhHHHHHHHHHHHHHH
Confidence 4566799999999999998875 3345667778899999999999999999875432 11222222334556666
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChH
Q 048807 383 VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE--GVTPNVVTLNTLVDGMCRHGRIN 460 (757)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~ 460 (757)
.....+..++-.+.. ..+.|...-..+...+...|+.+.|++.+-.+.++ |.. |...-..++..+.-.|.-+
T Consensus 216 aa~~~~~~~l~~~~a-----adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 216 AAATPEIQDLQRRLA-----ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HhcCCCHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 666655555555542 12558888899999999999999999988777765 344 6667788888888888555
Q ss_pred HHHHHHH
Q 048807 461 SAVEFFQ 467 (757)
Q Consensus 461 ~A~~~~~ 467 (757)
.+...++
T Consensus 290 p~~~~~R 296 (304)
T COG3118 290 PLVLAYR 296 (304)
T ss_pred HHHHHHH
Confidence 5444333
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.37 E-value=0.33 Score=41.39 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 617 TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
|..++.+++.++++.|+++....+++.. .|+..+... ..+. --......|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHH
Confidence 3456777777777777777777776544 333332210 0000 111344678888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc
Q 048807 697 KGLRQKNMLDKAFKLMDRMIEH-ACHPDYISMEILTEWLSEA 737 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~ 737 (757)
.+|+..|++..|+++++...+. +++-+..+|..|+..+...
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998888653 6777788899888876654
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=95.36 E-value=0.46 Score=49.38 Aligned_cols=144 Identities=11% Similarity=0.109 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 048807 598 NFSAARRVLKKMVKE-GLVPT-VVTYGALIHAFCVN---------GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666 (757)
Q Consensus 598 ~~~~A~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 666 (757)
..+.|..+|.+.+.. .+.|+ ...|..+..++... ....+|.++-++..+ --+.|......++.+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 478899999999922 24555 45666666555322 245677788887777 233577788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHH
Q 048807 667 NNQVELALSLMEEMKVKEVRPNT-NTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY---ISMEILTEWLSEAGQTEK 742 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~ 742 (757)
.|+++.|...|++.... .||. .+|......+.-.|+.++|.+.+++.++ +.|.. .+....++.|+..+ +++
T Consensus 351 ~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~ 425 (458)
T PRK11906 351 SGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKN 425 (458)
T ss_pred hcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhh
Confidence 89999999999999985 5664 5777777888889999999999999886 46654 34444455666665 466
Q ss_pred HHHHHh
Q 048807 743 LKKFVQ 748 (757)
Q Consensus 743 A~~~~~ 748 (757)
|.+++-
T Consensus 426 ~~~~~~ 431 (458)
T PRK11906 426 NIKLYY 431 (458)
T ss_pred hHHHHh
Confidence 666553
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=95.35 E-value=0.77 Score=47.82 Aligned_cols=81 Identities=10% Similarity=-0.032 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc
Q 048807 275 TDEAWDVLHVLM---KFDAPLEAASCNALLNALGR---------EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 275 ~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 342 (757)
.+.|..+|.++. ..++. ....|..+...+.. ..+..+|.++-+..++.+ +.|......+...+.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456777888887 44322 24444444333221 112233444444444443 23334433333333444
Q ss_pred CChhHHHHHHHHHHh
Q 048807 343 YRADEALEVFEKMIA 357 (757)
Q Consensus 343 g~~~~A~~~~~~~~~ 357 (757)
++++.|..+|++...
T Consensus 352 ~~~~~a~~~f~rA~~ 366 (458)
T PRK11906 352 GQAKVSHILFEQAKI 366 (458)
T ss_pred cchhhHHHHHHHHhh
Confidence 444444444444444
No 248
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.26 E-value=6.8 Score=44.23 Aligned_cols=441 Identities=14% Similarity=0.120 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCc--cchHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCcccccC
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKE-NDIEPS--VVTFGTIINRLC-KLYRADEALEVFEKMIAGKETAEISVEP 368 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (757)
+...|..||.. |++.++.+.+ ..++|. ..++..+...+. ...++++|...+++.+.... .+
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~ 93 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE------RH 93 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------cc
Confidence 55666666654 5566666663 333333 344555666554 57788888888888765431 11
Q ss_pred C-----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---
Q 048807 369 D-----VIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK-GCMPNAVTYNCL-INGFCKSGNIEKGLELFHLMKQEG--- 438 (757)
Q Consensus 369 ~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g--- 438 (757)
+ -.....++..|.+.+... |...+++....... +..+-...+.-+ +..+...++...|.+.++.+....
T Consensus 94 ~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 94 RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 1 122345677777777766 88888876432111 111112222333 233333478888988888877542
Q ss_pred CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 048807 439 VTPNVVTLNTLVDGMC--RHGRINSAVEFFQEVTRKGL---------CANAVTYTILITAF--CNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 439 ~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~ 505 (757)
..|...++..++.+.. +.+..+++.+..+++..... .|-..+|..+++.+ ...|+++.+...++++.
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2334444544544443 44556677777766633211 23445666666543 45677666665555442
Q ss_pred H---cC--CC-------------------------CCHhhH---------HHHHHH--HHhcCChhHHHHHHHH------
Q 048807 506 R---AG--CS-------------------------ADSVVY---------FTLISG--LCQAGRMNDASLVVSK------ 538 (757)
Q Consensus 506 ~---~~--~~-------------------------~~~~~~---------~~li~~--~~~~g~~~~A~~~~~~------ 538 (757)
+ .. .+ +....| .-++++ .+..+..++|.+++++
T Consensus 253 ~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~ 332 (608)
T PF10345_consen 253 QFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIE 332 (608)
T ss_pred HHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH
Confidence 2 10 00 111111 112222 2334444455555544
Q ss_pred -HH-HCCCCCC--------HHHHHHHHH---------HHHhcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHH--HHH
Q 048807 539 -LK-EAGFRPD--------IVCYNHLIS---------GFCKKKMLDKAYEVLQEMEDIGM-TPN-----SVTYNT--LIS 591 (757)
Q Consensus 539 -~~-~~g~~~~--------~~~~~~li~---------~~~~~g~~~~A~~~~~~~~~~~~-~~~-----~~~~~~--li~ 591 (757)
.. .....+. ...|...+. ..+-.+++..|...+..+.+..- .|+ ...+.. .+-
T Consensus 333 ~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl 412 (608)
T PF10345_consen 333 KLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGL 412 (608)
T ss_pred HhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHH
Confidence 33 1111111 112222222 22457889999999998875421 111 122222 233
Q ss_pred HHHHcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHH--HHHHHhcCC--HHH--HHHHHHHhhhcCCCCCCH--H
Q 048807 592 FLSKSGNFSAARRVLK--------KMVKEGLVPTVVTYGAL--IHAFCVNGH--VDE--AMKIFKELSSSSNVSPNT--V 655 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l--i~~~~~~g~--~~~--A~~~~~~~~~~~~~~p~~--~ 655 (757)
.+-..|+++.|...|. .....+...+..++..+ +..+...+. .++ +.++++.+.......|+. .
T Consensus 413 ~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~ 492 (608)
T PF10345_consen 413 YYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNR 492 (608)
T ss_pred HHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHH
Confidence 3456799999999997 44455544444444332 222222222 223 777777765532333333 2
Q ss_pred HHH-HHHHHHHhcC--CHHHHHHHHHHHHhC---CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC--
Q 048807 656 IYN-ILIDSLCKNN--QVELALSLMEEMKVK---EVRPNT---NTYNAMFKGLRQKNMLDKAFKLMDRMIEHA-CHPD-- 723 (757)
Q Consensus 656 ~~~-~li~~~~~~g--~~~~A~~~~~~m~~~---g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~-- 723 (757)
++. .++.++...- ...++...+.+..+. ....+. .+++.+..-+. .|+..|..+......... -.||
T Consensus 493 ~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~ 571 (608)
T PF10345_consen 493 TAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYS 571 (608)
T ss_pred HHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 333 3344443222 223444444433321 011111 22333333333 688888776666554321 1233
Q ss_pred HHHHHHHHH-----HHHhcCCHHHHHHHHhhc
Q 048807 724 YISMEILTE-----WLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 724 ~~~~~~l~~-----~~~~~g~~~~A~~~~~~~ 750 (757)
...|..+.. .+...|+.++|....++.
T Consensus 572 ~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 572 DQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred hHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 366644433 466679999999887765
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.26 E-value=0.8 Score=49.49 Aligned_cols=133 Identities=20% Similarity=0.116 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc------hHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCcccc
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIEPSVV------TFGTIINRLC----KLYRADEALEVFEKMIAGKETAEISV 366 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~ 366 (757)
...++...+=.||-+.+++++.+..+.+--..+. .|...+..++ .....+.|.++++.+.++
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-------- 262 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-------- 262 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------
Confidence 3444555555566666666666554432111111 1222222222 234566677777777664
Q ss_pred cCCHhHHH-HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 367 EPDVIIFN-TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 367 ~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
-|+...|. .-.+.+...|++++|.+.|++.......-.+-....+--+...+.-.+++++|.+.|..+.+.
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 24444333 334556667777777777776431000111112333444555566666666666666666654
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.13 E-value=0.35 Score=40.37 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=66.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHc
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTN---TYNAMFKGLRQK 702 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~ 702 (757)
-+.+..|+++.|++.|.+... -.+.+...||.-..++.-+|+.++|++-+++.++..-..... .|.--...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 356778888888888888776 234566778888888888888888888888888732111222 333444566778
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 048807 703 NMLDKAFKLMDRMIEHAC 720 (757)
Q Consensus 703 g~~~~A~~~~~~~~~~g~ 720 (757)
|+-+.|..-|+.+-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888888877663
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.09 E-value=1.7 Score=38.09 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=17.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 589 LISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
++..+.+.+.......+++.+...+ ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3333444444444444444444433 1333444444444443
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.08 E-value=3.3 Score=39.60 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=35.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 380 LCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
-.+.|++++|.+.|+.+..+ ....+-...+--.++.++.+.+++++|+...++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44667777777777777532 2222223455556666777777777777777776654
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=1.5 Score=38.38 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc
Q 048807 263 TQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 342 (757)
..+|..+...+.......+++.+.+.+. .+...+|.++..|++.+ ..+..+.+.. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4577777778889999999999888874 57888999999998753 3344444442 12455566677888888
Q ss_pred CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 343 YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV-GKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
+.++++.-++.++-. .. ..+..+... ++++.|.+.+.+. .+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~-----------~~----~Al~~~l~~~~d~~~a~~~~~~~---------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN-----------FK----DAIVTLIEHLGNYEKAIEYFVKQ---------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC-----------HH----HHHHHHHHcccCHHHHHHHHHhC---------CCHHHHHHHHHHHHc
Confidence 888888888877521 12 223333333 7788888877653 256677777766553
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=3.5 Score=38.88 Aligned_cols=205 Identities=11% Similarity=0.103 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 410 TYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC 489 (757)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 489 (757)
.|..-..+|....++++|...+.+..+- ..-|...|. ....++.|.-+.+++.+. .--+..|+.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4445555666677777777766665531 111111111 112233343444444332 111223444555667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCCH
Q 048807 490 NVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA---GF--RPDIVCYNHLISGFCKKKML 564 (757)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~--~~~~~~~~~li~~~~~~g~~ 564 (757)
.+|..+-|-..+++.-+. ...-++++|+.+|++.... +- ..-...+......+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777766666655554331 1233444555555443221 00 00111233344445555555
Q ss_pred HHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 048807 565 DKAYEVLQEMEDI----GMTPNS-VTYNTLISFLSKSGNFSAARRVLKKMVKEG---LVPTVVTYGALIHAFCVNGHVDE 636 (757)
Q Consensus 565 ~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~ 636 (757)
++|-..+.+-... .--++. ..|-..|-.|....++..|...++.--+.+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 5555444332110 001111 123333444444556666666666543321 112344455555544 3455555
Q ss_pred HHHHH
Q 048807 637 AMKIF 641 (757)
Q Consensus 637 A~~~~ 641 (757)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 44443
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.87 E-value=2.6 Score=44.11 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=23.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048807 589 LISFLSKSGNFSAARRVLKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKEL 644 (757)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 644 (757)
+....-+.|+.++|++.+++|++..... .......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3333444445555555554444332111 1223344444444444444444444444
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.80 E-value=0.53 Score=45.27 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-C-ccchHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL--EAASCNALLNALGREGDFKRMNQLFTEMKENDIE-P-SVVTFGTII 336 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li 336 (757)
.|+.-+.. .+.|++.+|.+.|...++..+.. ...++-.|...+...|+++.|..+|..+.+.-.. | -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56665554 47888999999999999986541 2457778999999999999999999999886211 1 134566777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 048807 337 NRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
....+.|+.++|...|+++++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8889999999999999999986
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.75 E-value=0.092 Score=35.18 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALL 301 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 301 (757)
++..+...|.+.|++++|+++|+++++..+. |...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4566777777777777777777777777654 666665553
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.85 Score=44.73 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=109.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHHcCC
Q 048807 523 LCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTY----NTLISFLSKSGN 598 (757)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~ 598 (757)
....|++.+|-..++++++. .+.|..+++..=.+|...|+.+.-...++++... ..+|...| ..+.-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34578888888888888876 4557888888888888899988888888888754 13343333 333445567899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC--CCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVS--PNTVIYNILIDSLCKNNQVELALSL 676 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~ 676 (757)
+++|.+.-++..+.+ +.|.-...++.+.+...|+..++.++..+-....... .-...|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999998888765 3466677788888888899999998877655421100 0112233333445566889999999
Q ss_pred HHHHHh
Q 048807 677 MEEMKV 682 (757)
Q Consensus 677 ~~~m~~ 682 (757)
|+.-+-
T Consensus 270 yD~ei~ 275 (491)
T KOG2610|consen 270 YDREIW 275 (491)
T ss_pred HHHHHH
Confidence 987664
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.63 E-value=4.3 Score=38.71 Aligned_cols=202 Identities=16% Similarity=0.117 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRA-GCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLIS 556 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 556 (757)
...+......+...+++..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344445555555566666666555555431 123344445555555555666666666666655543222 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 557 -GFCKKKMLDKAYEVLQEMEDIGM--TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 557 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (757)
.+...|+++.|...+.+...... ......+......+...++.++|...+.+............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56677777777777777755321 012333444444466677888888888887765311135667777777777788
Q ss_pred HHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 634 VDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
+++|...+..... ..|+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888887766 2233 334455555555667788888888887764
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.63 E-value=5.4 Score=39.84 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=14.0
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 048807 698 GLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~ 716 (757)
.+.+.+++++|.+.|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4567788888888887554
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.59 E-value=0.95 Score=48.15 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=73.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 378 DGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHG 457 (757)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (757)
....-.|+++++.++.+.-. ....++ ....+.++..+.+.|..+.|+++-..-. .-.....+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~--ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN--LLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHH--TGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhh--hcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence 34444666666666664221 011111 3345666666666666666665543221 1223344566
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 048807 458 RINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVS 537 (757)
Q Consensus 458 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (757)
+++.|.++.++. .+...|..|.+...++|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+
T Consensus 333 ~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 333 NLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp -HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 666665543221 2555666666666666666666666665432 3444555555666555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 538 KLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 538 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
.....|- ++....++.-.|+.++..+++.+
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444431 33333444444555555555443
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.41 E-value=0.6 Score=44.89 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 624 LIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
|..++...|++++|..+|..+.+.++-.|.. ..+.-|.....+.|+.++|...|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444444444444444322222221 2333344444444444444444444443
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.37 E-value=0.59 Score=39.08 Aligned_cols=92 Identities=21% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--NAVTYNCLI 415 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li 415 (757)
++...|+++.|++.|.+.+.. .+....+||.-..++--.|+.++|++-+++..+ ..|... --.+|..-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-------~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale--Lag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-------APERASAYNNRAQALRLQGDDEEALDDLNKALE--LAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-------cccchHhhccHHHHHHHcCChHHHHHHHHHHHH--hcCccchHHHHHHHHHH
Confidence 345566777777777766654 355666677777777767777777666666542 222111 112233333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEG 438 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g 438 (757)
..|...|+.+.|..=|+..-+.|
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC
Confidence 34555555555555555554443
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.21 E-value=11 Score=41.82 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHHcCChhHHHHHHHHHHH-------CCCCCccchHHHHHHHHHhc
Q 048807 275 TDEAWDVLHVLMKFDAPLEAASCNALLNA-----LGREGDFKRMNQLFTEMKE-------NDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 342 (757)
..+|.++++...+.| +...-..++.. +....|.+.|..+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456677777776665 33333333322 3345677777777777766 44 333555666666653
Q ss_pred C-----ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 343 Y-----RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV---GKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 343 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
. +.+.|..++.+..+.+ .|+... .+...|... .+...|.++|.... ..|. ...+-.+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa---~~G~---~~A~~~l 366 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAA---KAGH---ILAIYRL 366 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHHH--HHHHHHHcCCccccHHHHHHHHHHHH---HcCC---hHHHHHH
Confidence 3 4566788887777665 333322 233333322 34567777777664 3332 2222222
Q ss_pred HHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048807 415 INGFC----KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG 473 (757)
Q Consensus 415 i~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 473 (757)
..+|. -..+.+.|..++.+..+.| .|...--...+..+.. +..+.+.-.+..+.+.|
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 22222 2235677777777777766 2222222222233333 55555555555555544
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.08 E-value=3.2 Score=35.04 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=20.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG 473 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 473 (757)
...++|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444444444444444321 12334444444444444444444444444444443
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.01 E-value=2 Score=45.82 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
.+.++.-+.+.|..+.|+++-.. ..+ -.....+.|+++.|.++.++. ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 44555555555555555544322 111 112234455555555443321 244556666666666
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 631 NGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFK 710 (757)
Q Consensus 631 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (757)
+|+++-|.+.|.+... |..|.-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 360 ~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp TTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 6666666666655433 4455555555555555555554444432 12333333444455555554
Q ss_pred HHHH
Q 048807 711 LMDR 714 (757)
Q Consensus 711 ~~~~ 714 (757)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.00 E-value=12 Score=41.51 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHh
Q 048807 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDG-----MCRHGRINSAVEFFQEVTR-------KGLCANAVTYTILITAFCN 490 (757)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~ 490 (757)
+...|.++++...+.| +......+..+ +....+.+.|..+|..+.+ .| +......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 5678888888888876 33333333332 3355688888888888876 44 33345566666665
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 048807 491 VN-----NFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA---GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC--- 559 (757)
Q Consensus 491 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--- 559 (757)
.. +.+.|+.++.+..+.| .|+.. ..+...+... .+...|.++|....+.|.. ..+-.+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGL 374 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCC
Confidence 43 5566777777777766 22222 2222222222 3456777777777776633 22222222221
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 560 -KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEG 613 (757)
Q Consensus 560 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 613 (757)
-..+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2335667777777777766 2221111112222333 66666666665555544
No 268
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.99 E-value=14 Score=41.94 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=125.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEAGFRPDI-------VCYNHLIS-GFCKKKMLDKAYEVLQEMEDI----GMTPNSVTYNTL 589 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l 589 (757)
......++++|..+..++...-..|+. ..++.+-. .....|++++|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345678888988888776554222221 13444332 234578899999888877654 123345667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---H--HHHHHhcCC--HHHHHHHHHHhhhcC--CCC---CCHHHH
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGA---L--IHAFCVNGH--VDEAMKIFKELSSSS--NVS---PNTVIY 657 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---l--i~~~~~~g~--~~~A~~~~~~~~~~~--~~~---p~~~~~ 657 (757)
..+..-.|++++|..+..+..+..-.-++..+.. + ...+..+|+ +.+....|....... ..+ +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7888888999999998887765422233333322 2 223456673 334444444433310 011 112344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHH
Q 048807 658 NILIDSLCKN-NQVELALSLMEEMKVKEVRPNTNT--YNAMFKGLRQKNMLDKAFKLMDRMIEHAC----HPDYISMEIL 730 (757)
Q Consensus 658 ~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----~p~~~~~~~l 730 (757)
..+..++.+. +...+|..-+.--......|-... +..|+.+....|+.++|...+.++..... .++......+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4555555542 222333333333222222222222 23677888899999999999998876422 3333444444
Q ss_pred HHHHH--hcCCHHHHHHHHhh
Q 048807 731 TEWLS--EAGQTEKLKKFVQG 749 (757)
Q Consensus 731 ~~~~~--~~g~~~~A~~~~~~ 749 (757)
+.... ..|+.+++..+..+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 44432 45888888887766
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.98 E-value=7.4 Score=38.87 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHh
Q 048807 732 EWLSEAGQTEKLKKFVQ 748 (757)
Q Consensus 732 ~~~~~~g~~~~A~~~~~ 748 (757)
..+.+.+++++|.++++
T Consensus 254 ~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHhhcCHHHHHHHHH
Confidence 34567799999999987
No 270
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.95 E-value=9.5 Score=40.06 Aligned_cols=88 Identities=9% Similarity=-0.010 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHHHH
Q 048807 243 LVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNA-LGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~ 321 (757)
++.++...... +..|+..|...+..+-+.+.+.+.-.+|..|....+. ++..|-.-..- |-.+-+++.|..+|..-+
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34444443333 5669999999998887888899999999999998765 67777655544 334445999999999988
Q ss_pred HCCCCCccchHH
Q 048807 322 ENDIEPSVVTFG 333 (757)
Q Consensus 322 ~~g~~p~~~~~~ 333 (757)
+.+ +.++..|.
T Consensus 168 R~n-pdsp~Lw~ 178 (568)
T KOG2396|consen 168 RFN-PDSPKLWK 178 (568)
T ss_pred hcC-CCChHHHH
Confidence 874 22344443
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.31 E-value=21 Score=41.89 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV----TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
..++.--+.|.+.+|..++ .|+.. .|.+..+.+...+.+++|.-.|+..-+ ..-.+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHH
Confidence 3334444555555555544 33433 344444445556677777666665432 11235567
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTV--IYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLD 706 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 706 (757)
..+|++++|+.+..++.. + .+.. +-..|+.-+..+++.-+|-++..+.... | .-.+..|++.-.++
T Consensus 976 ~~~~dWr~~l~~a~ql~~--~--~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE--G--KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWE 1043 (1265)
T ss_pred HHhccHHHHHHHHHhhcC--C--HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHH
Confidence 777888888877776654 1 2222 2356777777788888887777776542 2 22334455666677
Q ss_pred HHHHHHHHH
Q 048807 707 KAFKLMDRM 715 (757)
Q Consensus 707 ~A~~~~~~~ 715 (757)
+|++.....
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 776655443
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.28 E-value=3.9 Score=35.42 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=56.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPL--EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
-.....+.|++++|.+.|+.+..+-+.. ...+-..++.+|.+.|++++|...+++.++....--.+-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4455568899999999999998875432 3456778889999999999999999999987532223456555555544
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.16 E-value=7.1 Score=41.06 Aligned_cols=150 Identities=12% Similarity=0.047 Sum_probs=86.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRKGLCANA-VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA 526 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 526 (757)
.++.-.-+..+.+.-.+.-.++++. .||. ..|..|. --......+|.++|++..+.| ...+. ......
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAg----E~~lg---~s~~~~ 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAG----EASLG---KSQFLQ 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHH----HHhhc---hhhhhh
Confidence 3444445566666666666666665 2332 2222222 223455788888888887753 11110 000000
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 527 GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTP-NSVTYNTLISFLSKSGNFSAARRV 605 (757)
Q Consensus 527 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 605 (757)
. .-..++........+-...-..+..+.-+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..+
T Consensus 242 ~----~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 242 H----HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred c----ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 0 00111222222222333344556667778999999999999998754221 334677899999999999999999
Q ss_pred HHHHHhC
Q 048807 606 LKKMVKE 612 (757)
Q Consensus 606 ~~~m~~~ 612 (757)
+.+.-+.
T Consensus 318 L~kYdDi 324 (539)
T PF04184_consen 318 LAKYDDI 324 (539)
T ss_pred HHHhccc
Confidence 9987543
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.13 E-value=0.29 Score=32.74 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLI 377 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li 377 (757)
++..+...|...|++++|+++|+++++.. |.|...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence 45667777777788888888887777764 55566655543
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.93 E-value=5.2 Score=37.02 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
-+.++|-|.--+...|+++.|.+.|+...+.++.-+-...|.-|..| --|+++-|.+-|.+.-..+ +.|+ |.++--
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D-~~DP--fR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDD-PNDP--FRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcC-CCCh--HHHHHH
Confidence 45678888888889999999999999999988765544555555444 3589999988887776664 2232 222221
Q ss_pred HH-HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC-------HH
Q 048807 338 RL-CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN-------AV 409 (757)
Q Consensus 338 ~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~ 409 (757)
-+ -..-++.+|..-+.+-.+. .|..-|...|-.|. .|++.+ +.+++++. .+...+ ..
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~---------~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~----a~a~~n~~~Ae~LTE 238 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEK---------SDKEQWGWNIVEFY-LGKISE-ETLMERLK----ADATDNTSLAEHLTE 238 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHh---------ccHhhhhHHHHHHH-HhhccH-HHHHHHHH----hhccchHHHHHHHHH
Confidence 11 2234667776555443322 23334433333322 122221 22334432 111111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 410 TYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
||.-+...+...|+.++|..+|+..+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 6777888888888888888888877765
No 276
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.73 E-value=0.98 Score=43.24 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCC----------------HHHH
Q 048807 615 VPTVVTYGALIHAFCVN-----GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQ----------------VELA 673 (757)
Q Consensus 615 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------------~~~A 673 (757)
+-|..+|.+.+..+... +.++=....++.|.+ +|+..|..+|+.|++.+-+..- -+=+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 34677777777776543 456666666777777 7888888888888877754221 1224
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 674 LSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 674 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
++++++|...|+.||.++-..|+.++.+.|
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 455555555555555555555555554444
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=20 Score=39.91 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=69.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMP---NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
=|+.+.+.+.+++|++..+... |..| -...+...|..+...|++++|-...-.|... +..-|.--+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~-----~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~ 432 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI-----GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFK 432 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc-----CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHH
Confidence 3677888999999999887652 3333 3456788899999999999999888888765 56666666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (757)
+...++...... .+.......+..+|..++..+..
T Consensus 433 f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 433 FAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 666666543322 22222222456677777766665
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.39 E-value=1.7 Score=39.83 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHH---H
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFG---T 334 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ 334 (757)
..+..++..|++.|+.++|.+.|.++.+....+. ...+-.+|......|++..+.....+....--.+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677899999999999999999999988644332 4577888899999999999998888775532111212222 2
Q ss_pred HHH--HHHhcCChhHHHHHHHHHHhC
Q 048807 335 IIN--RLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 335 li~--~~~~~g~~~~A~~~~~~~~~~ 358 (757)
... .+...+++.+|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 222 234578999999998877543
No 279
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.37 E-value=2.6 Score=40.50 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=54.7
Q ss_pred CCCHhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 510 SADSVVYFTLISGLCQA-----GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV 584 (757)
Q Consensus 510 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 584 (757)
..|..+|.+.+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+-.-... .+|++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~----------- 130 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQK----------- 130 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHH-----------
Confidence 34566666666665432 4455555556667777777777777777766543221100 00000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (757)
..-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+.
T Consensus 131 ----~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 ----VFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ----HHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 000010 1223455666666666666666666666666655544
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.27 E-value=1.2 Score=43.51 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCccchHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE-----NDIEPSVVTFGT 334 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 334 (757)
.+++.++..+..+|+.+.+...+++....++. +...|..++.+|.+.|+...|+..|+++.. .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 47888999999999999999999999999876 889999999999999999999999998876 477777666554
Q ss_pred HHHH
Q 048807 335 IINR 338 (757)
Q Consensus 335 li~~ 338 (757)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.22 E-value=9.7 Score=35.33 Aligned_cols=180 Identities=16% Similarity=0.057 Sum_probs=100.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHH
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVF 352 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 352 (757)
|-..-|.--|.+.+...|. -+.+||-+.-.+...|+++.|.+.|+...+.+.. ...+...-.-.+.--|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHH
Confidence 4444555555665555433 4678999999999999999999999999987622 2333322223344578999999888
Q ss_pred HHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 048807 353 EKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK-SGNIEKGLELF 431 (757)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~ 431 (757)
.+.-+.+. -.|=...|--++ ...-++.+|..-+.+- -. ..|..-|...|-.|.- .=..+ .++
T Consensus 157 ~~fYQ~D~-----~DPfR~LWLYl~---E~k~dP~~A~tnL~qR----~~--~~d~e~WG~~iV~~yLgkiS~e---~l~ 219 (297)
T COG4785 157 LAFYQDDP-----NDPFRSLWLYLN---EQKLDPKQAKTNLKQR----AE--KSDKEQWGWNIVEFYLGKISEE---TLM 219 (297)
T ss_pred HHHHhcCC-----CChHHHHHHHHH---HhhCCHHHHHHHHHHH----HH--hccHhhhhHHHHHHHHhhccHH---HHH
Confidence 88777651 122223343333 2344566665544332 11 2344445444333322 11112 233
Q ss_pred HHHHhCCCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 432 HLMKQEGVTPN-------VVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 432 ~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
+.+... -.-+ ..||--+..-+...|+.++|..+|+-.+..
T Consensus 220 ~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 220 ERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 333321 1111 235555666677777777777777766654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.70 E-value=0.41 Score=30.32 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
+|..|+.+|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888755
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.60 E-value=0.27 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=17.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 048807 283 HVLMKFDAPLEAASCNALLNALGREGDFKRMN 314 (757)
Q Consensus 283 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 314 (757)
++.++.+|. +..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444433 5666666666666666666654
No 284
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.30 E-value=19 Score=40.50 Aligned_cols=59 Identities=22% Similarity=0.161 Sum_probs=35.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-------hHHHHHHHHHHHCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDF-------KRMNQLFTEMKEND 324 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g 324 (757)
+|-.+.|+|++++|.++....... .......+-..+..|....+. ++...-|.+..+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 566678999999999998544332 233445666777777664322 34555666666543
No 285
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.29 E-value=16 Score=41.08 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhC
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGN-------IEKGLELFHLMKQE 437 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 437 (757)
.-.+|-.+.++|.+++|.++..+. ..........+-..+..|....+ -++...-|++....
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~----~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANEN----RNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHT----GGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHh----hhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 345777888999999999999665 33344455566777777766432 23455555655554
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.03 E-value=11 Score=33.50 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=22.8
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 630 VNGHVDEAMKIFKELSSSSNVSPNTVI-YNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 630 ~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+.++.+++..++..+.- +.|.... -..-...+...|++.+|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555543 2232221 11222334455555555555555544
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.81 E-value=12 Score=33.52 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=50.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCCH
Q 048807 559 CKKKMLDKAYEVLQEMEDIGMTPNSV-TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVV-TYGAL--IHAFCVNGHV 634 (757)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~ 634 (757)
.+.++.++|+.-|..+.+.|...-.+ ............|+...|...|+++-.....|-.. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455555555555555544321111 11112223344555555555555555433222221 11111 1122344555
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
++.....+.+.. .+.+-....-..|.-+-.+.|++.+|.+.|..+.+
T Consensus 149 ~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 554444444433 22222222334444444455555555555555443
No 288
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.74 E-value=1.2 Score=43.89 Aligned_cols=91 Identities=15% Similarity=0.074 Sum_probs=68.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCCh
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRA 345 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 345 (757)
.+.|.++|++++|+..|...+...+. |.+++..-..+|.+...|..|..=....+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 45789999999999999998887644 88999999999999999998888777777653 11223344444444556777
Q ss_pred hHHHHHHHHHHhC
Q 048807 346 DEALEVFEKMIAG 358 (757)
Q Consensus 346 ~~A~~~~~~~~~~ 358 (757)
++|.+-++.++..
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 7777777777763
No 289
>PRK09687 putative lyase; Provisional
Probab=90.70 E-value=19 Score=35.86 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHHH
Q 048807 477 NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRM----NDASLVVSKLKEAGFRPDIVCYN 552 (757)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~~ 552 (757)
|..+....+..+...|. +++...+..+... +|...-...+.++.+.|+. .++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444444444443 2233333333322 2444444455555555542 3455555544332 33444444
Q ss_pred HHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 553 HLISGFCKKKML-----DKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHA 627 (757)
Q Consensus 553 ~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (757)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ ++|...+-.+++. +|..+....+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444443321 223333333332 2355555566666666665 4566666666653 455555555555
Q ss_pred HHhcC-CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 628 FCVNG-HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLD 706 (757)
Q Consensus 628 ~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 706 (757)
+...+ ...++...+..+.. .+|..+-...+.++.+.|+ .+|+..+-+..+.+ + .....+.++.+.|..
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 55543 23455555555554 2456666677777777777 45666666665532 2 234566777777774
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048807 707 KAFKLMDRMIEHACHPDYISMEILTEWLS 735 (757)
Q Consensus 707 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 735 (757)
+|+..+.++.+. .||..+-...+.+|.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677777777753 456655444444443
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.49 E-value=2.9 Score=41.00 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK-----EGLVPTVVTYGA 623 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 623 (757)
.++..++..+...|+.+.+.+.++++.+.. +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677777888888888888888888776 66778888888888888888888888887765 366676665554
Q ss_pred HHHH
Q 048807 624 LIHA 627 (757)
Q Consensus 624 li~~ 627 (757)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.35 E-value=0.73 Score=28.53 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+|..++.++...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666665
No 292
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.27 E-value=12 Score=32.60 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=51.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
-.....+.|++++|.+.|+.+..+...| +-...+-..++.+|.+.+++++|...+++.++.....-...|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3344557788888888888885432222 223455667788888888888888888888876433333445555555544
Q ss_pred c
Q 048807 456 H 456 (757)
Q Consensus 456 ~ 456 (757)
.
T Consensus 95 ~ 95 (142)
T PF13512_consen 95 Y 95 (142)
T ss_pred H
Confidence 3
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.22 E-value=4.9 Score=36.86 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH--
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT--VIYNILIDSLCKNNQVELALSLMEEMKVKEVRP-NTNTYN-- 693 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~-- 693 (757)
..+..+...|++.|+.++|++.|.++.+ +...+.. ..+..+|......|++..+.....+....--.+ |...-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3456667777777777777777777766 4433333 245666677777777777777766665421111 111111
Q ss_pred HHHH--HHHHcCCHHHHHHHHHHHH
Q 048807 694 AMFK--GLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 694 ~l~~--~~~~~g~~~~A~~~~~~~~ 716 (757)
.... .+...|++.+|-+.|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 1111 1234566777776666654
No 294
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.13 E-value=24 Score=36.08 Aligned_cols=78 Identities=8% Similarity=0.071 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH---cCCHH
Q 048807 311 KRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK---VGKQE 387 (757)
Q Consensus 311 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~ 387 (757)
+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.+++++... +.+...|...++.... .-.++
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-------~~~~~LW~~yL~~~q~~~~~f~v~ 119 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-------PGSPELWREYLDFRQSNFASFTVS 119 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHhccCcHH
Confidence 45567778877773 4456667777777788888888888888888764 4567778777776554 22455
Q ss_pred HHHHHHHHH
Q 048807 388 EALGLIEQM 396 (757)
Q Consensus 388 ~A~~~~~~~ 396 (757)
+...+|.+.
T Consensus 120 ~~~~~y~~~ 128 (321)
T PF08424_consen 120 DVRDVYEKC 128 (321)
T ss_pred HHHHHHHHH
Confidence 666666554
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.07 E-value=0.66 Score=29.34 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 048807 297 CNALLNALGREGDFKRMNQLFTE 319 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~ 319 (757)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555554
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=37 Score=37.95 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=23.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAP-LEAASCNALLNALGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 321 (757)
|+.+.+.+.+++|+..-+.....-.. .-...+...|..+.-.|++++|-...-.|.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 44445555555555444333221100 012344444444444555555544444444
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.57 E-value=25 Score=35.37 Aligned_cols=147 Identities=13% Similarity=0.220 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC--
Q 048807 565 DKAYEVLQEMEDIGMTPNSVTYNTLISFLSK--S----GNFSAARRVLKKMVKEGL---VPTVVTYGALIHAFCVNGH-- 633 (757)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~-- 633 (757)
++...+++.+.+.|+..+..+|-+....... . ....+|..+|+.|.+... .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777777666555443222222 1 235667778888877632 2344555555433 2222
Q ss_pred --HHHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHhc-C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 634 --VDEAMKIFKELSSSSNVSPNTV-IYNILIDSLCKN-N--QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDK 707 (757)
Q Consensus 634 --~~~A~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~-g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 707 (757)
.+....+|+.+.+ .|...+-. -+.+-+-+++.. . ...++.++++.+.+.|+++....|..++-...-.+..++
T Consensus 157 ~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 157 ELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3556666766666 55554332 222222222221 1 145677777777777777777766655543333333324
Q ss_pred HHHHHHH
Q 048807 708 AFKLMDR 714 (757)
Q Consensus 708 A~~~~~~ 714 (757)
..+-+.+
T Consensus 236 ~~~~i~e 242 (297)
T PF13170_consen 236 IVEEIKE 242 (297)
T ss_pred HHHHHHH
Confidence 3333333
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.51 E-value=25 Score=35.34 Aligned_cols=131 Identities=19% Similarity=0.284 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCC---
Q 048807 531 DASLVVSKLKEAGFRPDIVCYNHLISGFCK--KK----MLDKAYEVLQEMEDIGM---TPNSVTYNTLISFLSKSGN--- 598 (757)
Q Consensus 531 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--- 598 (757)
+...+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|.+... .++..++..|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 345566777777777666655543333322 11 34567778888877642 2344455555443 2222
Q ss_pred -HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-CC--HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 599 -FSAARRVLKKMVKEGLVPTVV-TYGALIHAFCVN-GH--VDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 599 -~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~-g~--~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
.+.+..+|+.+.+.|+..+.. -+.+-+-++... .. ...+..+++.+.+ .+++.....|..++-..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHHH
Confidence 356667777777767665322 222222222221 11 4467777777777 57777766666555433
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.46 E-value=0.55 Score=29.28 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=24.1
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHH
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEAL 390 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 390 (757)
|++.++.+ |.|..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555554 667888888888888888888875
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.27 E-value=0.98 Score=27.82 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.|..+..++...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666664
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.04 E-value=34 Score=36.27 Aligned_cols=182 Identities=11% Similarity=0.138 Sum_probs=114.5
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 510 SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTL 589 (757)
Q Consensus 510 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 589 (757)
+.|.....+++..+.++..+.-.+.+..+|.+-| -+...|..++..|... ..+.-..+++++.+..+ .|.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 3455666777777777777777777777777764 3566777788888777 55667777777777653 344444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKEGLVP--T---VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
+..|.+ ++.+.+..+|.++...-++. + ...|.-+... -..+.+.-..+...+....|...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555555 77777777887776542210 1 1233333321 13456667777777776555555566666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGL 699 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 699 (757)
....++++|++++..+.+.. ..|...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 78888888888888777643 23443334444444
No 302
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.95 E-value=42 Score=37.28 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCccchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 326 EPSVVTFGTIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 326 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
.|| |..+..+|.-..+.+.+.++++++.+.
T Consensus 210 ~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 210 SPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred CCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 455 445677888889999999999999874
No 303
>PRK09687 putative lyase; Provisional
Probab=88.46 E-value=28 Score=34.66 Aligned_cols=233 Identities=12% Similarity=0.071 Sum_probs=108.7
Q ss_pred cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCC
Q 048807 367 EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI----EKGLELFHLMKQEGVTPN 442 (757)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~ 442 (757)
.+|.......+..+...|..+ +...+..+. ..+|...-...+.++.+.|+. +++...+..+... .++
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll------~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d 104 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELC------SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS 104 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHH------hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC
Confidence 345556666666666666533 333333331 134555555666666666652 4566666665333 234
Q ss_pred HHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 048807 443 VVTLNTLVDGMCRHGRI-----NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYF 517 (757)
Q Consensus 443 ~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 517 (757)
..+-...+.++...+.. ..+...+...... ++..+-...+.++.+.++ ++++..+-.+++. +|..+-.
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~ 177 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRN 177 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHH
Confidence 44444444444443321 1223333222222 244444455555555554 3455555555542 2333444
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048807 518 TLISGLCQAG-RMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKS 596 (757)
Q Consensus 518 ~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 596 (757)
..+.++.+.+ ....+...+..+.. .++...-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhc
Confidence 4444444332 12344444444443 2345555555556666555 34444444444432 2 123445555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 597 GNFSAARRVLKKMVKEGLVPTVVTYGALIHA 627 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (757)
|+. +|...+.++.+. .||..+-...+.+
T Consensus 249 g~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 249 GDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred CCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 553 455556555543 2344444333333
No 304
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=23 Score=33.44 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCC
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLC 475 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~ 475 (757)
..-...+++.+|+++|+++......
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344567777777777777765544
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.21 E-value=19 Score=32.38 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 048807 244 VGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDE 277 (757)
Q Consensus 244 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 277 (757)
.++...+.+.|++++...+..+|+.+.+.|++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444444445555555555555555555554433
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.20 E-value=3.9 Score=43.70 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=44.6
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 048807 382 KVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINS 461 (757)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 461 (757)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+.
T Consensus 649 ~lgrl~iA~~la~e~~---------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN---------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hcCcHHHHHHHHHhhc---------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 4555555555544431 444455555555555555555555554332 3333444444444443
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 462 AVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFD 502 (757)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (757)
...+-....+.|.. |.-.-+|...|+++++.+++.
T Consensus 711 l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 711 LAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 33333333333321 112223444555555555544
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.16 E-value=27 Score=34.11 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 048807 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE-----HACHPDYIS 726 (757)
Q Consensus 658 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 726 (757)
+.....|..+|.+.+|.++.++.+... +-+...|-.++..+...|+--.|.+.++++.+ .|+..|..+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 444566777888888888887777642 34566677777777778877777777766642 355555433
No 308
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.08 E-value=52 Score=37.24 Aligned_cols=447 Identities=13% Similarity=0.107 Sum_probs=218.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHH-HcCChhHHHHHHHHHHHCCCCCccc--
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLM-KFDAPL--EAASCNALLNALG-REGDFKRMNQLFTEMKENDIEPSVV-- 330 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-- 330 (757)
.+...|..||.+ |++.++.+. +..++| ++.++-.++..+. ...+++.|...+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345556666654 344455555 222332 3456666776666 6788888888888775543222211
Q ss_pred ---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhcCCCCC
Q 048807 331 ---TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTL-IDGLCKVGKQEEALGLIEQMRLRLQKGCMP 406 (757)
Q Consensus 331 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (757)
....++..+.+.+... |...+++.++.-+. .+..+-...+.-+ +..+...++...|.+.++.+.........|
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~--~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET--YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 1123455566665555 88888887764310 0011122233333 333333478888888888875432222344
Q ss_pred CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHH--
Q 048807 407 NAVTYNCLINGFC--KSGNIEKGLELFHLMKQEG---------VTPNVVTLNTLVDGMC--RHGRINSAVEFFQEVTR-- 471 (757)
Q Consensus 407 ~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~-- 471 (757)
...++..++.+.. ..+..+++.+.+..+.... ..|...+|..+++.++ ..|+++.+...++++.+
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~ 255 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFL 255 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4555555555443 3455666777776663321 1334566666666554 46676666665554432
Q ss_pred -----CC-CC----------------------CCHH---------HHHHHHHH--HHhcCCHHHHHHHHH-------HHH
Q 048807 472 -----KG-LC----------------------ANAV---------TYTILITA--FCNVNNFQEAIKWFD-------DMS 505 (757)
Q Consensus 472 -----~~-~~----------------------~~~~---------~~~~li~~--~~~~g~~~~A~~~~~-------~m~ 505 (757)
.. .+ +... +..-++.+ ++..+..++|.+.++ +..
T Consensus 256 ~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 256 DEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 10 00 0011 11112222 223344445555544 443
Q ss_pred -HcCCCCC--------HhhHHHHHH---------HHHhcCChhHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHHH
Q 048807 506 -RAGCSAD--------SVVYFTLIS---------GLCQAGRMNDASLVVSKLKEAGF-RPD-------IVCYNHLISGFC 559 (757)
Q Consensus 506 -~~~~~~~--------~~~~~~li~---------~~~~~g~~~~A~~~~~~~~~~g~-~~~-------~~~~~~li~~~~ 559 (757)
.....+. ...|...+. ..+-.+++..|....+.+....- .|+ ...+...+-.+.
T Consensus 336 ~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q 415 (608)
T PF10345_consen 336 IKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQ 415 (608)
T ss_pred ccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHH
Confidence 1111111 112222222 23456889999999988876421 111 122222223344
Q ss_pred hcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHH--HHHHHHcC--CHHH--HHHHHHHHHhC-CCCC--CHHHHH
Q 048807 560 KKKMLDKAYEVLQ--------EMEDIGMTPNSVTYNTL--ISFLSKSG--NFSA--ARRVLKKMVKE-GLVP--TVVTYG 622 (757)
Q Consensus 560 ~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~--A~~~~~~m~~~-~~~p--~~~~~~ 622 (757)
..|+++.|...|. .....+...+..++..| +..+...+ ..++ +.++++.+... .-.| +..++.
T Consensus 416 ~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~ 495 (608)
T PF10345_consen 416 STGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAY 495 (608)
T ss_pred HcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHH
Confidence 5799999999997 44455544444444332 22222222 2223 66666665542 1122 233333
Q ss_pred HH-HHHHHhcC--CHHHHHHHHHHhhhcC--CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHH
Q 048807 623 AL-IHAFCVNG--HVDEAMKIFKELSSSS--NVSPNT---VIYNILIDSLCKNNQVELALSLMEEMKVKE-VRP--NTNT 691 (757)
Q Consensus 623 ~l-i~~~~~~g--~~~~A~~~~~~~~~~~--~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~ 691 (757)
.+ +.++...- ...++...+.+..+.. ....+. .+++.+...+. .|+..+..+......... -.| ....
T Consensus 496 ~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~L 574 (608)
T PF10345_consen 496 CLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQL 574 (608)
T ss_pred HHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 33 33333222 2234544444433312 111222 23344444444 688777666655543211 122 3345
Q ss_pred HH-----HHHHHHHHcCCHHHHHHHHHHHH
Q 048807 692 YN-----AMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 692 ~~-----~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
|. .+.+.+...|+.++|.....+..
T Consensus 575 W~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 575 WHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 53 33444677899999999887764
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.97 E-value=19 Score=32.01 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=47.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
+..-.+.++.+++..+++.+.-..|. ....-..-...+.+.|++.+|..+|+++.+.+ |....-..|+..|.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 33445778999999999988877554 23333333455678899999999999987763 33333344444443
No 310
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.56 E-value=23 Score=32.52 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=54.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 625 IHAFCVNGHVDEAMKIFKELSSSSNVSPNT----VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLR 700 (757)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 700 (757)
...+...|++++|..-++.... . +.|. .+-.-|.......|.+|+|+..++...+.+. .......-++++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~-~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA-Q--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc-c--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 3446667777777777776554 1 1121 1122344566677778888777777654321 2223445566777
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 048807 701 QKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~g 719 (757)
..|+-++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7788888888888877653
No 311
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.92 E-value=46 Score=35.35 Aligned_cols=181 Identities=13% Similarity=0.198 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 546 PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625 (757)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (757)
.|.....+++..+...-++.-...+-.+|.+.| .+...|..++..|... ..++-..+|+++.+..+. |++.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 466677888999999989999999999999885 4777888999999988 668889999999987543 555555566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPN------TVIYNILIDSLCKNNQVELALSLMEEMKV-KEVRPNTNTYNAMFKG 698 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~ 698 (757)
..|.+ ++...+..+|.++.. .+-|. ...|.-+...- ..+.+..+.+..++.. .|...-.+.+.-+-.-
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 65655 899999999988876 22231 12455554432 3467777777777764 4544556677777788
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 699 LRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
|....++++|++++...++.. ..|.-.-..++..++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd 251 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENLRD 251 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHH
Confidence 888999999999999998763 4455555566666554
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.74 E-value=42 Score=34.74 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 582 NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP---TVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
...+|..++..+.+.|.++.|...+.++...+... +......-+...-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567778888888888888888888887643111 233333445556677888888888877766
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.37 E-value=6.7 Score=31.10 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTE 732 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 732 (757)
.=++.+-++.+....+.|++....+.+.+|.+-+++.-|+++++-...+ ...+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3355566666666777888888888888888888888888888877654 3334456666653
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.19 E-value=25 Score=31.55 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=25.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 595 KSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..|.+++.....+.+...+-+.....-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4455555554444444333222333344444444555555555555555554
No 315
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.04 E-value=1.8 Score=26.73 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKF 288 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 288 (757)
+|..+..+|...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4455555555556666666555555554
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.65 E-value=2.5 Score=41.66 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=29.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
..-|.+.|.+++|+..|...+.. .| +.+++..-..+|.+..++..|..-.....
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455566666666666555543 23 55555555556666655555554444433
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.43 E-value=9.2 Score=34.97 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=37.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHh
Q 048807 593 LSKSGNFSAARRVLKKMVKEGLVPT-----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCK 666 (757)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 666 (757)
+.+.|++++|..-|..++..- ++. ...|..-..++.+.+.++.|+.-..+.++ +.|. .....--..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHHHh
Confidence 445555555555555555531 111 12233333344455555555554444444 1121 1112222334444
Q ss_pred cCCHHHHHHHHHHHHh
Q 048807 667 NNQVELALSLMEEMKV 682 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~ 682 (757)
...+++|++-|+++.+
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5555555555555544
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.41 E-value=0.021 Score=50.59 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=20.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIF 641 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 641 (757)
.+.+.+.++....+++.+...+...+....+.++..|++.++.++..+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 33334444444444444443332333444444444444444444444443
No 319
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.37 E-value=55 Score=34.77 Aligned_cols=90 Identities=4% Similarity=0.003 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 048807 280 DVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY-RADEALEVFEKMIAG 358 (757)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~ 358 (757)
.+|+.+..+ +.-|+..|...+..+.+.+.+.+..++|.+|.... +.++..|-.-.......+ .++.|..+|.+.+..
T Consensus 92 ~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 92 FLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 344444443 23389999999999988888999999999999863 334455544444444444 499999999999886
Q ss_pred CCCCcccccCCHhHHHHHHH
Q 048807 359 KETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 359 ~~~~~~~~~~~~~~~~~li~ 378 (757)
+ +.....|....+
T Consensus 170 n-------pdsp~Lw~eyfr 182 (568)
T KOG2396|consen 170 N-------PDSPKLWKEYFR 182 (568)
T ss_pred C-------CCChHHHHHHHH
Confidence 4 444555554443
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.13 E-value=12 Score=33.77 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
+++|.+.|++..+ ..|+...|+.-+... ++|-++..++.++
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 4455555555555 356666666555443 2344444444443
No 321
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.83 E-value=35 Score=38.21 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVL 285 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 285 (757)
++.-|+ .+..+.-.|.++.|.+++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 467777 677788899999999988543
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.61 E-value=12 Score=36.90 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 548 IVCYNHLISGFCKKKMLDKAYEVLQEMEDIG---MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGAL 624 (757)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (757)
..+...++..-....+++.+...+-++...- ..++... .+.+.. +-.-++++++.++..=+..|+-||-.+++.+
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3344444444444556666666655554321 0111111 111222 2223455666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 048807 625 IHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~~~~ 646 (757)
++.+.+.+++.+|.++.-.|..
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666655555444
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.12 E-value=12 Score=40.28 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHH
Q 048807 454 CRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDAS 533 (757)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 533 (757)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 35566666666544432 455666666666666666666666665432 334555555555555444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 534 LVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 534 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
.+-....+.|.. |...-+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444444444321 2223344555666666665543
No 324
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.08 E-value=6.9 Score=31.40 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 672 LALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 672 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
+..+-++.+....+.|++....+.+.+|.+.+++..|+++++-...+ ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 45555666666677788888888888888888888888888877664 333333666665
No 325
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.77 E-value=33 Score=30.91 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 048807 429 ELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINS 461 (757)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 461 (757)
+.++.+.+.+++|+...+..+++.+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444455555666666666666666665443
No 326
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.59 E-value=89 Score=35.81 Aligned_cols=227 Identities=11% Similarity=0.027 Sum_probs=114.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCHhhHHHHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANA-------VTYTILIT-AFCNVNNFQEAIKWFDDMSRA----GCSADSVVYFTLI 520 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li 520 (757)
.....++.+|..++.++...-..|+. ..++.|-. .....|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888877654222221 13343322 234567888888887766553 2234556667777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH---HH--HHHHHhcCC--HHHHHHHHHHHHhCC---CCC---CHHHHH
Q 048807 521 SGLCQAGRMNDASLVVSKLKEAGFRPDIVCYN---HL--ISGFCKKKM--LDKAYEVLQEMEDIG---MTP---NSVTYN 587 (757)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~---~l--i~~~~~~g~--~~~A~~~~~~~~~~~---~~~---~~~~~~ 587 (757)
.+..-.|++++|..+..+..+.--.-+...+. .+ ...+...|+ ..+....|....... .+. -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77788888888888776655432222333222 22 223445663 233333333332221 011 122334
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCCHHHHHHHH
Q 048807 588 TLISFLSK-SGNFSAARRVLKKMVKEGLVPTVVT--YGALIHAFCVNGHVDEAMKIFKELSSSS---NVSPNTVIYNILI 661 (757)
Q Consensus 588 ~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~~~~~~~li 661 (757)
.+..++.+ .+...+|..-+.--......|-... +..|+..+...|++++|...+.++.... +..++...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 44444443 1222233333332222222222222 2256677778899999988888876521 1112222222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 048807 662 DS--LCKNNQVELALSLMEE 679 (757)
Q Consensus 662 ~~--~~~~g~~~~A~~~~~~ 679 (757)
.. ....|+..+|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2346777777666655
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.06 E-value=23 Score=32.55 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=70.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLE----AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
.+-+.+.|++++|..-|..++..-+... .+.|..-..++.+.+.++.|+.-....++.+ +-.......-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3457789999999999999988744322 3456666778889999999999999988875 2233334444567888
Q ss_pred cCChhHHHHHHHHHHhCC
Q 048807 342 LYRADEALEVFEKMIAGK 359 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~ 359 (757)
...+++|++-|.++++.+
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 899999999999998864
No 328
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.44 E-value=3.1 Score=25.47 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhC
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKF 288 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 288 (757)
+..+...|.+.|++++|++.|++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.38 E-value=3.4 Score=26.76 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 690 NTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.+++.+...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777778888888888888777754
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.12 E-value=14 Score=34.20 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=53.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHH
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH---ACHPDYISMEILTEWLSEAGQTE 741 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~ 741 (757)
.+.|+ ++|.+.|-++...+.--++.....|+..| -..+.++|+.++.+.++. +-.+|+..+.+|++.+.+.|+.+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 67777777777665555555555555444 456778888888887763 22566778888888888888888
Q ss_pred HHHH
Q 048807 742 KLKK 745 (757)
Q Consensus 742 ~A~~ 745 (757)
+|.=
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 7753
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.92 E-value=13 Score=33.59 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 670 VELALSLMEEMKVKEVRPNT-NTYNAMFKGLRQKN-----------MLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
+++|+.-|++.+. +.|+. .++.+++.+|...+ .+++|.+.|+++.+ .+|+...|..-+....+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 3444555555554 34543 56666777665443 25666777777775 58999999877776654
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.64 E-value=2.8 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+|..+...+...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666666666554
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.52 E-value=3.5 Score=26.70 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~ 321 (757)
+++.|...|...|++++|.+++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555443
No 334
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.18 E-value=13 Score=36.64 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEG---LVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI 656 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 656 (757)
+....+...++..-....+++.+...+-++.... ..|+... .+++..+ -.-+.++++.++..=.. +|+-||.++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIq-YGiF~dqf~ 137 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQ-YGIFPDQFT 137 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcch-hccccchhh
Confidence 3344445555555555667777777777776531 1122111 1222222 22356677777776666 788888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
++.+++.+.+.+++.+|..+...|+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877777653
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.12 E-value=15 Score=33.95 Aligned_cols=72 Identities=18% Similarity=0.084 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHH
Q 048807 387 EEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE---GVTPNVVTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A 462 (757)
++|++.|-.+. ..+...++.....|...|. ..+.+++++++....+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E---~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLE---GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHc---CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33444444443 3333333444444443333 34455555555544432 2234455555555555555555554
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.86 E-value=10 Score=35.28 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT 410 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (757)
|.+..+..+.+.+++.+|+...+.-++.. +.|...-..++..||-.|++++|..-++-.... .....+....
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-~p~~t~~a~l 74 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-SPQDTVGASL 74 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhc-CcccchHHHH
Confidence 34555667777888888888887777764 556667777888888888888888777655321 3333444566
Q ss_pred HHHHHHH
Q 048807 411 YNCLING 417 (757)
Q Consensus 411 ~~~li~~ 417 (757)
|..+|.+
T Consensus 75 yr~lir~ 81 (273)
T COG4455 75 YRHLIRC 81 (273)
T ss_pred HHHHHHH
Confidence 6666654
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.67 E-value=16 Score=29.41 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 048807 601 AARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSN 649 (757)
Q Consensus 601 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 649 (757)
+..+-++.+....+.|+..+..+.+.+|.+..++..|.++|+.++...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 4555555666666667777777777777777777777777776665433
No 338
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.43 E-value=12 Score=40.08 Aligned_cols=105 Identities=18% Similarity=0.105 Sum_probs=83.3
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHH
Q 048807 269 FCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 348 (757)
+...|+...|...+..+....+....+....|.....+.|....|-.++.+.+... ....-++..+.++|....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34568999999988888766555556677778888888899999999999888765 44677888899999999999999
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHH
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLC 381 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 381 (757)
++.|+.+++.. +.+.+.-+.|...-|
T Consensus 696 ~~~~~~a~~~~-------~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLT-------TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcC-------CCChhhHHHHHHHHH
Confidence 99999999875 556666676665544
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.64 E-value=17 Score=28.98 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 598 NFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
+.-++.+-++.+....+.|+.....+.+.+|.+..++..|.++|+.++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555566666666667777777777777777777777777776654
No 340
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.41 E-value=6 Score=30.06 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHH
Q 048807 666 KNNQVELALSLMEEMKVKEVRPN-T-NTYNAMFKGLRQKNMLDKAFKL 711 (757)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~ 711 (757)
...+.++|+..|+..++.-..+. . .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554444211111 0 1334444444444444444443
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.62 E-value=3.8 Score=24.80 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
++.++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44455555566666666655554
No 342
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.25 E-value=83 Score=31.52 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=37.4
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh----c
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR----EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK----L 342 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 342 (757)
..+++..|...+......+ +......+...|.. ..+..+|.++|..+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 3456666666666655532 22333334333332 2244555555555555442 2222233333333 2
Q ss_pred CChhHHHHHHHHHHhCC
Q 048807 343 YRADEALEVFEKMIAGK 359 (757)
Q Consensus 343 g~~~~A~~~~~~~~~~~ 359 (757)
.+..+|..+++++.+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 24445555555554443
No 343
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.25 E-value=89 Score=31.33 Aligned_cols=83 Identities=8% Similarity=0.035 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------
Q 048807 636 EAMKIFKELSSSSNVSPNTVIYNILIDSLCK----NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN-------- 703 (757)
Q Consensus 636 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-------- 703 (757)
.|...+.++.. .+ +......+...|.. ..+.++|...|++..+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~-~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 173 KALYLYRKAAE-LG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred hHHHHHHHHHH-hc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhh
Confidence 56666666555 22 23333444444432 2366777777777776553 22222222 444444
Q ss_pred -------CHHHHHHHHHHHHHcCCCCCHHH
Q 048807 704 -------MLDKAFKLMDRMIEHACHPDYIS 726 (757)
Q Consensus 704 -------~~~~A~~~~~~~~~~g~~p~~~~ 726 (757)
+...|...+......|.......
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEA 274 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 66666777766666554443333
No 344
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.07 E-value=1.4 Score=38.85 Aligned_cols=84 Identities=14% Similarity=0.208 Sum_probs=56.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
+|..+.+.+..+....+++.+.+.+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666777788888888888888766556678888888888888777777777661 122334456666667777
Q ss_pred hhHHHHHHHHH
Q 048807 345 ADEALEVFEKM 355 (757)
Q Consensus 345 ~~~A~~~~~~~ 355 (757)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77776666654
No 345
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.00 E-value=1.5e+02 Score=34.54 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 372 IFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
-|..|+..|...|+.++|++++.+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHh
Confidence 36788889999999999999998884
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.23 E-value=20 Score=37.42 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=60.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc
Q 048807 304 LGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV 383 (757)
Q Consensus 304 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 383 (757)
-...|+...|.+-+...+++ .+.++.............|+++.+.+.+..+-+. +.....+...+++...+.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-------~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-------IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-------hcCCchHHHHHHHhhhch
Confidence 33456666655544444443 2433333322233445566666666665544332 233344555666666666
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 384 GKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEG 438 (757)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (757)
|++++|...-+.|. ... -.+...........-..|-++++.-.++++...+
T Consensus 371 ~r~~~a~s~a~~~l---~~e-ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 371 ARWREALSTAEMML---SNE-IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhHHHHHHHHHHHh---ccc-cCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 66666666666553 211 2222222222223334455666666666665543
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.02 E-value=4 Score=23.47 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCChhhHHHHHH
Q 048807 185 NVLIDVLLRCDHDRDAFNVLD 205 (757)
Q Consensus 185 ~~l~~~~~~~g~~~~A~~~~~ 205 (757)
..+..++...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666554
No 348
>PRK11619 lytic murein transglycosylase; Provisional
Probab=74.97 E-value=1.6e+02 Score=33.55 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=21.9
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 627 AFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLM 677 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 677 (757)
.+...|...+|...+..+.. . .+......+...-.+.|..+.++...
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~--~--~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVA--S--RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHh--c--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455566666655555544 1 12223334444444455555544433
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.38 E-value=1.2e+02 Score=31.99 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=78.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFD-APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
|.--...|+...|-+-+...++.. ..|+.+... ...+...|+++.+.+.+...... +.....+...++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 334445688877755444444443 234444333 34566789999999988766543 22345677888899999999
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+++|...-+.|+... ++ +..........--..|-++++.-.++++.
T Consensus 373 ~~~a~s~a~~~l~~e------ie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 373 WREALSTAEMMLSNE------IE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHHHhccc------cC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 999999999888765 22 22222222223344577888888888873
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.72 E-value=62 Score=28.37 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=39.6
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
...++.+++..+++.+.-..|. ....-..-...+...|++.+|.++|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3578999999999998876544 22233333445678899999999999998875
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.61 E-value=63 Score=28.35 Aligned_cols=53 Identities=8% Similarity=0.206 Sum_probs=35.4
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 382 KVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEG 438 (757)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (757)
..++.+++..+++.|+- .....+...++.. ..+...|++++|..+|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 37888888888888752 2222233344443 34677888888888888888764
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.49 E-value=47 Score=31.62 Aligned_cols=118 Identities=11% Similarity=0.098 Sum_probs=75.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHhcCCH
Q 048807 593 LSKSGNFSAARRVLKKMVKEGLVPTVVT-YGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTV-IYNILIDSLCKNNQV 670 (757)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~ 670 (757)
|....+++.|+..|.+.+.. .|++.+ |..-+-++.+..+++.+..--.+..+ +.||.+ ....+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 44556788888888777764 566644 44556677778888887777666665 456655 344556667777788
Q ss_pred HHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 671 ELALSLMEEMKV----KEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 671 ~~A~~~~~~m~~----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
++|+..+.+..+ ..+.+-...+..|..+-...=...++.++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888888743 234444556666665544444455555555543
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.47 E-value=42 Score=32.77 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=54.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 048807 625 IHAFCVNGHVDEAMKIFKELSS-SSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ-- 701 (757)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 701 (757)
|.+++..+++.+++...-+.-+ ...++|. +...=|-.|.|.|+...+.++-......--.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 6778888888888766544322 1233333 3444455688888888888888777753111223346666666544
Q ss_pred ---cCCHHHHHHHH
Q 048807 702 ---KNMLDKAFKLM 712 (757)
Q Consensus 702 ---~g~~~~A~~~~ 712 (757)
.|.++||.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58888888877
No 354
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.30 E-value=1.2e+02 Score=31.35 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048807 477 NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSA---DSVVYFTLISGLCQAGRMNDASLVVSKLKE 541 (757)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (757)
...+|..++..+.+.|.++.|...+..+...+... ++.....-+..+...|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666667777777777666666533111 233333445555666666777666666555
No 355
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.18 E-value=10 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKE 322 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 322 (757)
+|..+...|.+.|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555444
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.87 E-value=31 Score=32.24 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048807 298 NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIA 357 (757)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 357 (757)
+..++.+.+.+...+|++..++-++.. +-|..+-..++..||-.|++++|...++-.-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 334555566666666666666666553 33455555666667777777777666665544
No 357
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.60 E-value=5.8 Score=23.94 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=13.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc
Q 048807 187 LIDVLLRCDHDRDAFNVLDEMLDR 210 (757)
Q Consensus 187 l~~~~~~~g~~~~A~~~~~~m~~~ 210 (757)
++.+|.+.|+.++|++.|+++...
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555556666666666665553
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.50 E-value=1.1e+02 Score=30.21 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
+++.....|..+|.+.+|.++.++.++... .+...|-.|+..++..|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344555667777777777777777766532 366667777777777777666666666554
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.99 E-value=25 Score=28.20 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048807 634 VDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMD 713 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 713 (757)
.++|..+-+-+.. .+-. ...+-.+-+..+...|++++|..+.+.+ ..||.+.|.+|- -.+.|..+++..-+.
T Consensus 21 HqEA~tIAdwL~~-~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHL-KGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhc-CCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 4555555544443 1111 2222223344566777777777776655 357777776542 356676666666666
Q ss_pred HHHHcC
Q 048807 714 RMIEHA 719 (757)
Q Consensus 714 ~~~~~g 719 (757)
+|-..|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 665543
No 360
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.93 E-value=45 Score=28.07 Aligned_cols=58 Identities=10% Similarity=0.225 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 673 ALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 673 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
..+-++......+.|++.....-+.+|.+-+++..|.++++-...+ +.+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3445556666677888888888888888888888888888887654 333334566555
No 361
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.65 E-value=1.1e+02 Score=30.04 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=12.3
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 048807 664 LCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 664 ~~~~g~~~~A~~~~~~m~~ 682 (757)
|.-.|+...|...++...+
T Consensus 151 yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 4455777777777666654
No 362
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.20 E-value=1.9e+02 Score=32.43 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEM 320 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m 320 (757)
..-|+ .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 67887 567777789999999998543
No 363
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.11 E-value=45 Score=31.63 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=43.6
Q ss_pred HHhcCCHHHHHHHHHHhhhc---CCCCCCH--HHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCC----CHH-
Q 048807 628 FCVNGHVDEAMKIFKELSSS---SNVSPNT--VIYNILIDSLCKNNQ-------VELALSLMEEMKVKEVRP----NTN- 690 (757)
Q Consensus 628 ~~~~g~~~~A~~~~~~~~~~---~~~~p~~--~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p----~~~- 690 (757)
+.....+++|.+.+.-+.-. .+.++.. ..+.-+.+.|...|+ ...|++.|.+..+..-.| +..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 44455666666666544321 1222221 234444555555555 334555555554432221 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
..-.++....+.|+.++|.+.|.+.+..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 2223444445666667777666666654
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.03 E-value=6.2 Score=22.65 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCChhHHHHHHH
Q 048807 263 TQLITRFCRKGKTDEAWDVLH 283 (757)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~ 283 (757)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666665554
No 365
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.76 E-value=1.6e+02 Score=31.37 Aligned_cols=109 Identities=16% Similarity=0.052 Sum_probs=76.6
Q ss_pred HHHhcCCHHHHHHHHHHhhh--cCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC----
Q 048807 627 AFCVNGHVDEAMKIFKELSS--SSNV--SP---NTVIYNILIDSLCKNNQVELALSLMEEMKV-------KEVRPN---- 688 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~~~~~--~~~~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~---- 688 (757)
-+...|++.+|.+++...-- ..|. .| .-..||.|.-...+.|.+.-+..+|.+... .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 35567999999988765321 1121 11 123457777777788888888888877763 455553
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048807 689 -------TNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEA 737 (757)
Q Consensus 689 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 737 (757)
..+||+ +-.|...|+.-.|.+.|.+.... +..++..|..|..+|...
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 234554 44678899999999999999875 778889999999999754
No 366
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=68.41 E-value=2.2e+02 Score=32.53 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHH
Q 048807 634 VDEAMKIFKELSSSSNVSPNTVIYNILIDSLC-KNNQVELALSLMEEMKVKEVRPNTN-TYNAMFKGLRQKNMLDKAFKL 711 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 711 (757)
++.|...|..... ....+...+.......+. -+++.+.++.+|+.....|. -+.. .|...+..-...|+...|..+
T Consensus 442 F~~A~~eLt~~~~-~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~-~~iag~Wle~~~lE~~~g~~~~~R~~ 519 (881)
T KOG0128|consen 442 FNHAWEELTELYG-DQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG-GSIAGKWLEAINLEREYGDGPSARKV 519 (881)
T ss_pred HHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc-chHHHHHHHHHhHHHHhCCchhHHHH
Confidence 4445555555444 112222333333333322 35678888888888776542 2333 455555555667888888887
Q ss_pred HHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 048807 712 MDRMIEHACHPDY--ISMEILTEWLSEAGQTEKL 743 (757)
Q Consensus 712 ~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A 743 (757)
+..+.-....|+. .++..+...-...|.++..
T Consensus 520 ~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~ 553 (881)
T KOG0128|consen 520 LRKAYSQVVDPEDALEVLEFFRRFEREYGTLESF 553 (881)
T ss_pred HHHHHhcCcCchhHHHHHHHHHHHHhccccHHHH
Confidence 7777765555653 3333344444445555543
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.59 E-value=19 Score=27.44 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=29.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 048807 701 QKNMLDKAFKLMDRMIEHACHPDY--ISMEILTEWLSEAGQTEKLKKFV 747 (757)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 747 (757)
...+.++|+..+++.++.-..|.. .++..|+.+++..|++.+..+|.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777664222222 55666667777777777766664
No 368
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.50 E-value=1.3e+02 Score=30.29 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=22.9
Q ss_pred hcCCHHHHHHHHHHhhhcC--CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 630 VNGHVDEAMKIFKELSSSS--NVSPNTVIYN--ILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 630 ~~g~~~~A~~~~~~~~~~~--~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+.++.++|+++++++.+.. --.|+.+.|. ..+..+...|+.+++.+.+++..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555544311 1123333332 233334444555555555555443
No 369
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.74 E-value=1.3e+02 Score=29.07 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048807 421 SGNIEKGLELFHLMKQEGVT---PNVVTLNTLVDGMCRHGRINSAVEFFQEVT 470 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 470 (757)
..+.++|+.-|.+.++.... ....+...++..+.+.|++++....|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34666777777766654211 122334455666666666666666665554
No 370
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=65.10 E-value=2.4e+02 Score=31.79 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 391 GLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGM 453 (757)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (757)
++++.+.........|| |..+.++|.-..+.+.+.++++++.+.. .....|....+.+
T Consensus 196 ~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~ 253 (929)
T KOG2062|consen 196 KVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLY 253 (929)
T ss_pred HHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHh
Confidence 33443332235555665 5567778888899999999999998852 1233444444443
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.58 E-value=15 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=13.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555666666666666666554
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.23 E-value=28 Score=37.46 Aligned_cols=94 Identities=7% Similarity=-0.025 Sum_probs=50.6
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcc-hHHHHHHHHHhcCChhhHH
Q 048807 124 RERMSPESLFDLYKACKDQNIPLS-INSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTH-VRNVLIDVLLRCDHDRDAF 201 (757)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 201 (757)
|.+|...+|+..+....-.--+.. ....-+|...+-+.|...+|-.++..+....++.. -+..+..+|+..|.+...+
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~ 303 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSV 303 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhh
Confidence 456666666666555443211111 12344556666777777777665554443222111 1334566666666666777
Q ss_pred HHHHHHHhccCCCCCC
Q 048807 202 NVLDEMLDRESQFPVN 217 (757)
Q Consensus 202 ~~~~~m~~~~~~~~p~ 217 (757)
.-|+...+.++++.|.
T Consensus 304 ~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 304 LCYDHALQARPGFEQA 319 (886)
T ss_pred hhhhhhhccCcchhHH
Confidence 7777776666555443
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.65 E-value=17 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=10.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 048807 415 INGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~ 436 (757)
..+|...|+.+.|.++++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 374
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=62.51 E-value=1.1e+02 Score=30.73 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH-H
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN--CLINGFCKSGNIEKGLELFHLMKQ-----EGVTPNVVT-L 446 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~-~ 446 (757)
.++...-+.++.++|++.++++......-..|+.+.|. .++..+...|+.+++.+++++..+ .|++|++.+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34445556678899999999887665555666766654 455666778888888888888776 466665543 4
Q ss_pred HHHHHHHHH-cCChH
Q 048807 447 NTLVDGMCR-HGRIN 460 (757)
Q Consensus 447 ~~li~~~~~-~g~~~ 460 (757)
..+-.-|.+ .|++.
T Consensus 160 Y~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHHhHH
Confidence 444444433 34443
No 375
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.85 E-value=1.5e+02 Score=28.30 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=12.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 048807 559 CKKKMLDKAYEVLQEMEDIGM 579 (757)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~ 579 (757)
...+++.+|+.+|+++....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666666655443
No 376
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.59 E-value=1.8e+02 Score=28.69 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMC 454 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (757)
.=|.+++..+++.+++...-+.... .+..+|.+ ...-|-.|.+.++...+.++-..-.+..-.-+...|.+++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~-pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQV-PEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcC-cccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3478888899999988876655321 33344443 34445568888998888888877776533334555777776665
Q ss_pred H-----cCChHHHHHHH
Q 048807 455 R-----HGRINSAVEFF 466 (757)
Q Consensus 455 ~-----~g~~~~A~~~~ 466 (757)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 58888887765
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.31 E-value=15 Score=21.09 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMK 287 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~ 287 (757)
+..+...|...|++++|...|+..++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34445555555555555555555544
No 378
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.98 E-value=2.4e+02 Score=30.08 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=67.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCCCCCH--
Q 048807 378 DGLCKVGKQEEALGLIEQMRLRLQKGCMPN-----AVTYNCLINGFCKSGNIEKGLELFHLMKQ-------EGVTPNV-- 443 (757)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~-- 443 (757)
..+.-.|++.+|.+++.........|.... -..||.|.-++.+.|.+.-+..+|.+.++ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 445567888888887765431112221111 22357777777777777777766666653 3544421
Q ss_pred ---------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 444 ---------VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490 (757)
Q Consensus 444 ---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (757)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|-.|..+|..
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2233 233566788888888888887765 33477888888877753
No 379
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.58 E-value=1.8e+02 Score=28.33 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=73.2
Q ss_pred ccCCHhHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC
Q 048807 366 VEPDVIIFNTLIDGL-CKVGKQEEALGLIEQMRLRLQKGCMP--NAVTYNCLINGFCKSGNIEKGLELFHLMKQE---GV 439 (757)
Q Consensus 366 ~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 439 (757)
..||+..-|..-..- .+..+.++|+.-|.+... .+|.+. .-.+.-.+|..+.+.|++++..+.+.+++.- .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVle--lEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLE--LEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHh--cccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 466666544432221 234578999999998763 233222 2445667899999999999999998888642 01
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 440 --TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK-----GLCANAVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 440 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
.-+..+.|++++......+.+-....|+.-++. +-..--.+-+.|...|...|.+.+..++++++.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 113345566655544444443333333322110 000001122334455555555555555555544
No 380
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=59.21 E-value=1.7e+02 Score=27.97 Aligned_cols=138 Identities=13% Similarity=0.196 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048807 552 NHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVN 631 (757)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (757)
..-+..|.+.-++.-|....+++.+- ..+-.++ --|.+..+.+--.++.+-....+++-+.....+++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEP-----IQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhh-----HHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 34455566666666665555555431 1111122 22444444333334444344444444444444443 4567
Q ss_pred CCHHHHHHHHHHhhhcCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 632 GHVDEAMKIFKELSSSSNV-----------SPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGL 699 (757)
Q Consensus 632 g~~~~A~~~~~~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 699 (757)
|+..+|+..++......|. .|.+.....++..|. .+++++|.+++.++-+.|+.|... .+.+..++
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 7888877777665543332 355655666666554 468999999999988888877543 34444444
No 381
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.54 E-value=1e+02 Score=24.94 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=5.5
Q ss_pred HhcCCHHHHHHHH
Q 048807 559 CKKKMLDKAYEVL 571 (757)
Q Consensus 559 ~~~g~~~~A~~~~ 571 (757)
...|++++|..+.
T Consensus 50 mNrG~Yq~Al~l~ 62 (115)
T TIGR02508 50 MNRGDYQSALQLG 62 (115)
T ss_pred HccchHHHHHHhc
Confidence 3444444444433
No 382
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.05 E-value=2.8e+02 Score=29.50 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=8.1
Q ss_pred HHHHHcCCHHHHHHHHH
Q 048807 378 DGLCKVGKQEEALGLIE 394 (757)
Q Consensus 378 ~~~~~~g~~~~A~~~~~ 394 (757)
...+..|+.+.+..+++
T Consensus 73 ~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 73 HDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 33445555555444443
No 383
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=55.90 E-value=3.7e+02 Score=30.99 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=17.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 048807 334 TIINRLCKLYRADEALEVFEKMIA 357 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~ 357 (757)
.++.-+.++|+.+.|.+.+.+...
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 456667788888888888887654
No 384
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.83 E-value=68 Score=22.44 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=18.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 728 (757)
+.-++.+.|++++|.++.+.+++ +.|+..-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 44456667777777777777765 356554333
No 385
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.69 E-value=6e+02 Score=33.33 Aligned_cols=152 Identities=12% Similarity=0.027 Sum_probs=98.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAP--LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
.|..+-.+++.+.+|...++.-.....+ ....-+..+...|...++++....+...-.. .|+ ...-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 5667788999999999999984111111 1123344444589999999988887764221 122 3345556778
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHH
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL-INGFCK 420 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~ 420 (757)
.|++..|...|+.+++.+ ++....++-++......|.++...-..+... ....+....|+++ +.+--+
T Consensus 1462 ~g~~~da~~Cye~~~q~~-------p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~----~~~se~~~~~~s~~~eaaW~ 1530 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-------PDKEKHHSGVLKSMLAIQHLSTEILHLDGLI----INRSEEVDELNSLGVEAAWR 1530 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-------CccccchhhHHHhhhcccchhHHHhhhcchh----hccCHHHHHHHHHHHHHHhh
Confidence 899999999999999875 4457777777777777888887777666552 2233444444443 233356
Q ss_pred cCCHHHHHHHHH
Q 048807 421 SGNIEKGLELFH 432 (757)
Q Consensus 421 ~g~~~~A~~~~~ 432 (757)
.++++.....+.
T Consensus 1531 l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1531 LSQWDLLESYLS 1542 (2382)
T ss_pred hcchhhhhhhhh
Confidence 666666665554
No 386
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.81 E-value=2.2e+02 Score=28.01 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=73.0
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----HHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 382 KVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFH----LMKQEGVTPNVVTLNTLVDGMCRHG 457 (757)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~~~~~li~~~~~~g 457 (757)
+.+++++|.+++..-. ..+.+.|+...|-++-. -..+.+.+.|......++..+...+
T Consensus 2 ~~kky~eAidLL~~Ga------------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~ 63 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA------------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFP 63 (260)
T ss_dssp HTT-HHHHHHHHHHHH------------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-
T ss_pred ccccHHHHHHHHHHHH------------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 4677788887776542 22333444433333322 2223345555554455555444433
Q ss_pred ChH-HHHHHHHHHHH---CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhH
Q 048807 458 RIN-SAVEFFQEVTR---KG--LCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMND 531 (757)
Q Consensus 458 ~~~-~A~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 531 (757)
.-+ +-.++.+.+++ .+ ..-|+.....+...|.+.|++.+|...|-.-. .++...+..++......|...+
T Consensus 64 ~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 64 PEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--
T ss_pred CCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcc
Confidence 221 12222222222 11 22366777888888999999988887764221 1222233224433334444333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 532 ASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI 577 (757)
Q Consensus 532 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (757)
+ |...-.+ +-.|...++...|...++...+.
T Consensus 140 ~--------------dlfi~Ra-VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 140 A--------------DLFIARA-VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp H--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred h--------------hHHHHHH-HHHHHHhcCHHHHHHHHHHHHHH
Confidence 3 2222222 23355677888888877666544
No 387
>PRK11619 lytic murein transglycosylase; Provisional
Probab=54.47 E-value=3.8e+02 Score=30.58 Aligned_cols=118 Identities=12% Similarity=0.068 Sum_probs=72.4
Q ss_pred cCChhHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 526 AGRMNDASLVVSKLKEAG-FRPDI--VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAA 602 (757)
Q Consensus 526 ~g~~~~A~~~~~~~~~~g-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 602 (757)
..+.+.|..++....... +.+.. ..+..+.......+..++|...++...... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 456688888888764442 22221 234444433344333667777777655442 2444444445555588999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 603 RRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 603 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
...+..|.... .-...-.--+..++...|+.++|...|+.+..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888876532 22333334456676778999999999999754
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.28 E-value=80 Score=25.20 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=26.0
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 381 CKVGKQEEALGLIEQMRLRLQKGCMPN-----AVTYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
.+.|++.+|.+.+.+.-+.......+. ......+...+...|+.++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356777777665555432212222211 12222334445555666666655555543
No 389
>PRK10941 hypothetical protein; Provisional
Probab=53.17 E-value=1.8e+02 Score=28.69 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH-ACHPDYISMEILTEWLS 735 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~ 735 (757)
.+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--+-.|.+.|.+..|..-++..+++ .-.|+.......+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3456667778888888888888887742 334455665666677888888888877777664 22344444444444443
No 390
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.45 E-value=2e+02 Score=26.72 Aligned_cols=127 Identities=9% Similarity=0.104 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccC
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFG-----TIINRLCKLYRADEALEVFEKMIAGKETAEISVEP 368 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (757)
...|-.++.... .+.. +.....+.+.... ...+|. .+...+...|++++|...++..+... .
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t--------~ 120 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT--------K 120 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc--------h
Confidence 344555555443 2333 4445555555542 122232 23345667888888888888776431 1
Q ss_pred C----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 369 D----VIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEG 438 (757)
Q Consensus 369 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (757)
| ..+--.|.+.....|.+++|+..++... ..+. .......-.+++...|+-++|..-|++.++.+
T Consensus 121 De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 121 DENLKALAALRLARVQLQQKKADAALKTLDTIK---EESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---cccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 2 1223345667777888888888877663 1111 11122334566777788888888888777764
No 391
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=51.91 E-value=1.7e+02 Score=27.77 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048807 614 LVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP---NTVIY--NILIDSLCKNNQVELALSLMEEMKVKEVRPN 688 (757)
Q Consensus 614 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 688 (757)
+.++..-++.|+--|.-...+.+|-..|..- .++.| |..++ ..-|....+.|++++|++......-.-+.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 3455566666666665555555555555432 34444 23333 2445666777888888877777643222334
Q ss_pred HHHHHHHHH----HHHHcCCHHHHHHHHHHHH
Q 048807 689 TNTYNAMFK----GLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 689 ~~~~~~l~~----~~~~~g~~~~A~~~~~~~~ 716 (757)
...+-.|.. -+.+.|..++|+++.+.=+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 322221111 2356677777777766654
No 392
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.72 E-value=28 Score=36.63 Aligned_cols=107 Identities=17% Similarity=0.013 Sum_probs=74.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCCh
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRA 345 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 345 (757)
++-+.+.+.++.|..++.++++.++. ++..|..=..++.+.+++..|+.=+..+++.. +-....|..-..++.+.+++
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHH
Confidence 34456678889999999999987643 44455444578888899999988888888765 22234444445566677888
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH
Q 048807 346 DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK 382 (757)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 382 (757)
.+|+..|+.... +.|+..-....++-+-+
T Consensus 89 ~~A~~~l~~~~~--------l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--------LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--------cCcCcHHHHHHHHHHHH
Confidence 888888888876 45676666666655443
No 393
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.12 E-value=1.2e+02 Score=23.98 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL-EAASCNALLNALGREGD 309 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 309 (757)
|.|...--.+...+...|++++|++.+-.+++.+... +...-..|+..|.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4566666667777777777777777777777665332 34445555555554444
No 394
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.00 E-value=2.1e+02 Score=27.54 Aligned_cols=123 Identities=13% Similarity=0.037 Sum_probs=72.6
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc-hHHHHHHHHHhcCChhH
Q 048807 269 FCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV-TFGTIINRLCKLYRADE 347 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~ 347 (757)
|....+++.|+..+.+.+..++. ....|+.=+..+.+..+++.+..--...++. .||.+ ....+..++.....+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 44456677777777777776533 2355666677777788888777766666664 45533 34455566777788888
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
|+..+.+......... +.+....+..|..+=-+.=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~--~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQP--FTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888754331111 2333445555555443333444444444443
No 395
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.83 E-value=2.8e+02 Score=27.99 Aligned_cols=96 Identities=11% Similarity=0.145 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh---cCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCH----H
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSS---SSNVSPNTVIYNILI-DSLCKNNQVELALSLMEEMKVKEVRPNT----N 690 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 690 (757)
..+.....-||+-|+.+.|++.+.+..+ ..|.+.|++.+..-+ -.|....-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455566778888888888888776544 145666665544333 3344444566666666777777655443 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
+|..+- |....++.+|-.+|-..+
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 444332 234457888887777665
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.78 E-value=2.8e+02 Score=29.19 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=23.3
Q ss_pred HcCChhHHHHHHHHHHHCCCCCccc--hHHHHHHHH--HhcCChhHHHHHHHHHHh
Q 048807 306 REGDFKRMNQLFTEMKENDIEPSVV--TFGTIINRL--CKLYRADEALEVFEKMIA 357 (757)
Q Consensus 306 ~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~--~~~g~~~~A~~~~~~~~~ 357 (757)
..++|..|.++|+++..+ ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555555555555544 333322 222232333 234555666666665543
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.32 E-value=69 Score=29.81 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 652 PNTVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 652 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
|+..+|..++.++...|+.++|.....++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.92 E-value=16 Score=31.06 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=17.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048807 700 RQKNMLDKAFKLMDRMIEHACHPDYISMEILTE 732 (757)
Q Consensus 700 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 732 (757)
...|.-.+|..+|++|++.|-+||. |..|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3445555666666666666666654 444443
No 399
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=47.68 E-value=3e+02 Score=27.39 Aligned_cols=116 Identities=9% Similarity=0.135 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHH
Q 048807 385 KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK-SG-NIEKGLELFHLMKQE-GVTPNVVTLNTLVDGMCRHGRINS 461 (757)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~ 461 (757)
-+.+|+++|+.... .+.+-.|..+...+++.... .+ ....-.++.+-+... |-.++..+...++..+++.+++.+
T Consensus 143 ~Vv~aL~L~~~~~~--~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 143 IVVEALKLYDGLNP--DESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred HHHHHHHHhhccCc--ccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 35667777764320 12234455666666665554 22 222223333333322 345566667777777777777777
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 462 AVEFFQEVTRK-GLCANAVTYTILITAFCNVNNFQEAIKWFD 502 (757)
Q Consensus 462 A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (757)
-.+++...... +...|...|..+|....+.|+..-..++.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77777666554 455567777777777777777665554443
No 400
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.62 E-value=3.3e+02 Score=27.85 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 048807 600 SAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK---NNQVELALSL 676 (757)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 676 (757)
+.-+.+++++++.+ +.+......++..+.+..+.++..+-++++... .+-+...|...++.... .-.+++...+
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34445555555542 234444555555555555555555556555551 11234445555444333 1234444444
Q ss_pred HHHHHh------CCC------CCC--H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH
Q 048807 677 MEEMKV------KEV------RPN--T---NTYNAMFKGLRQKNMLDKAFKLMDRMIEHAC-HPDY 724 (757)
Q Consensus 677 ~~~m~~------~g~------~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~ 724 (757)
|.+.+. .+. .++ . ..+..+...+.++|..+.|..+++-+++..+ .|+.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 444331 010 011 1 1222333344678888889888888887644 3443
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.58 E-value=2.9e+02 Score=27.25 Aligned_cols=194 Identities=16% Similarity=0.163 Sum_probs=86.9
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHHHHH
Q 048807 418 FCKSGNIEKGLELFHLMKQEGVTPNVV-------TLNTLVDGMCRHGRINSAVEFFQEVTR----KGLCANAVTYTILIT 486 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~li~ 486 (757)
..+.+++++|+..+.++...|+..|.. +...+...|...|+...-.+......+ -.-+....+..+|+.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 344455555555555555555444332 233445555555555443333222111 111112223344444
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCCH-----hhHHHHHHHHHhcCChhHHHHHHH----HHHHCCCCCCHHHHHHH-H
Q 048807 487 AFCNV-NNFQEAIKWFDDMSRAGCSADS-----VVYFTLISGLCQAGRMNDASLVVS----KLKEAGFRPDIVCYNHL-I 555 (757)
Q Consensus 487 ~~~~~-g~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~----~~~~~g~~~~~~~~~~l-i 555 (757)
.+-.. ..++.-+++.....+....... ..-.-++..+.+.|++.+|+.+.. ++.+..-+++..+...+ -
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES 172 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES 172 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence 43322 2344444444444332111111 112346677788888888876554 34444444544432222 2
Q ss_pred HHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh
Q 048807 556 SGFCKKKMLDKAYEVLQEME----DIGMTPNSVTYNTLISFL--SKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 611 (757)
.+|-...++.++..-+.... ..-+||....---|+++- |...++..|...|-+..+
T Consensus 173 Kvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 173 KVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 23444444444444443332 122455444444444442 344566777777666654
No 402
>PRK10941 hypothetical protein; Provisional
Probab=47.25 E-value=2.6e+02 Score=27.71 Aligned_cols=56 Identities=7% Similarity=-0.064 Sum_probs=22.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
-.+|.+.++++.|+.+.+.++... +.+..-+.--.-.|.+.|.+..|..-++...+
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 334444444444444444444421 11222233333334444444444444444433
No 403
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.76 E-value=20 Score=30.60 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=22.7
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNALLNA 303 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 303 (757)
+.|.-.+|..+|..|++.|.+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 44677778888888888887776 47766654
No 404
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.57 E-value=3.2e+02 Score=27.48 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=31.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 589 LISFLSKSGNFSAARRVLKKMVKEGLVPTV---VTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
|..+-.+.|+..+|.+.++++.+.- |-. .....|+.++....-+.+...++.+..+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3434446677777777777776642 211 1233456666666555555555555443
No 405
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.43 E-value=3.1e+02 Score=27.26 Aligned_cols=118 Identities=9% Similarity=0.117 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048807 597 GNFSAARRVLKKMVK-EGLVPTVVTYGALIHAFCV-N-GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELA 673 (757)
Q Consensus 597 g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 673 (757)
..+.+|+.+|+..-. ..+--|..+...+++.... . .....-.++.+-+....+-.++..+....+..+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345666666663221 1233455555555555443 1 123333344444444455567777788888889999999998
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048807 674 LSLMEEMKVK-EVRPNTNTYNAMFKGLRQKNMLDKAFKLMDR 714 (757)
Q Consensus 674 ~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 714 (757)
.++++..... +..-|...|..++......|+..-..+++++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8888887754 4455778888889888888887666665554
No 406
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.63 E-value=57 Score=23.67 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=8.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 048807 589 LISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m 609 (757)
+|.+|...|++++|.++.+++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 407
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.22 E-value=1.8e+02 Score=24.08 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMK 287 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 287 (757)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355677777777777777777766655
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.91 E-value=3.5e+02 Score=28.44 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 048807 557 GFCKKKMLDKAYEVLQEMEDIGMTPNSV--TYNTLISFLS--KSGNFSAARRVLKKMVKE 612 (757)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 612 (757)
.+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788999999999998886 455544 4455555554 456788899988887764
No 409
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.76 E-value=51 Score=23.93 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 048807 694 AMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
.++.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555554
No 410
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.46 E-value=1.5e+02 Score=25.27 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 048807 634 VDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTN-TYNAMFKGLRQKNMLDKAFKLM 712 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 712 (757)
++.+.+.|..... ...|......-+..-.... ++.++|+.|..+|+--... -|......+...|++++|.++|
T Consensus 49 Ler~~~~f~~~~~---Y~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 49 LERCIRKFKDDER---YKNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHTTSGG---GTT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHhhhHh---hcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHHH
Q 048807 713 DRMI 716 (757)
Q Consensus 713 ~~~~ 716 (757)
+..+
T Consensus 123 ~~Gi 126 (126)
T PF08311_consen 123 QLGI 126 (126)
T ss_dssp HHHH
T ss_pred HhhC
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.16 E-value=86 Score=29.15 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=35.8
Q ss_pred hcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 666 KNNQVELAL---SLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 666 ~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
..++.+... +..++... ..|++..|..++.++...|+.++|.+..+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444433 34444444 478888888888889999999999888888875
No 412
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.06 E-value=3.4e+02 Score=28.30 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT---VVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..+.-+.+.|..+|+++.|++.|.+...- +... +..|..+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 35666777788888888888888775543 1212 22344444444556777777777776665
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.79 E-value=4e+02 Score=27.83 Aligned_cols=170 Identities=17% Similarity=0.166 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---------CCCCcc
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDA--PLEAASCNALLNALGREGDFKRMNQLFTEMKEN---------DIEPSV 329 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~ 329 (757)
.+.-+.+.|..+|+++.|++.+.++..--. ..-...|-.+|..-...|++.....+-.+.... .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 456688899999999999999999543210 012345666677777778888777777666553 122233
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCH
Q 048807 330 VTFGTIINRLCKLYRADEALEVFEKMIAGKETA-EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNA 408 (757)
Q Consensus 330 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 408 (757)
..+..+...+ .++++.|.+.|-......... ..-.+.|+.+|..| .+++--++-+--+.+.....- ..-..-.+
T Consensus 232 ~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL-cALAtfdr~~Lk~~vi~n~~F--k~flel~P 306 (466)
T KOG0686|consen 232 KCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL-CALATFDRQDLKLNVIKNESF--KLFLELEP 306 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhh-HhhccCCHHHHHHHHHcchhh--hhHHhcCh
Confidence 3344443333 346777777666544322110 11123344444432 222222222211111111100 00011123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 409 VTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
..+..+...| .+++...+++++++..+
T Consensus 307 qlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 307 QLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred HHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 3344444333 35688888888887654
No 414
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.42 E-value=3.1e+02 Score=26.47 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=40.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHH
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR-EGDFKRMNQLFTEMKE 322 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~ 322 (757)
.++..+-..|+++++.+.+.++...++..+..--|.+..+|-. -|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4667778889999999999999998877777777777766642 3444556666655544
No 415
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=42.29 E-value=2.3e+02 Score=26.25 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 621 YGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
+...+-.....|++++|..-++++.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333334445555555555555443
No 416
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.73 E-value=3.6e+02 Score=26.68 Aligned_cols=166 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHCC--------CCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 048807 465 FFQEVTRKG--------LCANAVTYTILI-TAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLV 535 (757)
Q Consensus 465 ~~~~~~~~~--------~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 535 (757)
+|..+.+.| ++.|..-+|.|+ .--.+...++++++-.++-- |-.--..++..+..-|++.++.+.+.+.
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 048807 536 VSKLKEA----GFRPDIV-CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISF--LSKSGNFSAARRVLKK 608 (757)
Q Consensus 536 ~~~~~~~----g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~ 608 (757)
..+..+. |.+.|+. +-..|.-.|....-.++.++..+.|.++|...+..--...-.+ +....++.+|-.++-+
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 609 MVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 609 m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
.+..--.....+|...+..-.-+|
T Consensus 218 ~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 218 ILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HhccccccccccHHHHHHHHHHhh
No 417
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.71 E-value=1.8e+02 Score=24.65 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 601 AARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 601 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
+..+-++.+...++.|+......-+.++.+..++..|.++|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344445555555666666666666666666777777777666655
No 418
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.30 E-value=98 Score=21.66 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=17.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYN 693 (757)
Q Consensus 660 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 693 (757)
+.-++.+.|++++|.+..+.+++ +.|+..-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 34456666777777777666666 355544333
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.86 E-value=1.8e+02 Score=23.09 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=6.7
Q ss_pred HhcCCHHHHHHHHHHh
Q 048807 629 CVNGHVDEAMKIFKEL 644 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~ 644 (757)
...|+.++|...+++.
T Consensus 52 ~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 52 RRFGHYEEALQALEEA 67 (94)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3334444444444443
No 420
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.44 E-value=3.1e+02 Score=26.07 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=56.3
Q ss_pred HHHcCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCC-------HHHHHHHHHHhhhcCCCC---CCH-H
Q 048807 593 LSKSGNFSAARRVLKKMVK----EGLVPTV--VTYGALIHAFCVNGH-------VDEAMKIFKELSSSSNVS---PNT-V 655 (757)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~---p~~-~ 655 (757)
|.....+++|++.|.-++- .+.++.. ..+..+...|...|+ +..|.+.|.+..+....+ -+. .
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3445567777766654432 2234443 344555666777777 445666676666532221 122 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKE 684 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 684 (757)
..-.++....+.|+.++|.+.|.++...+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34456677888999999999999999754
No 421
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.39 E-value=2.1e+02 Score=23.57 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=38.4
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGN 423 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (757)
..++|..+.+.+...+ .-...+--+-+..+...|++++|+. .- .....||...|..|.. .+.|-
T Consensus 21 cH~EA~tIa~wL~~~~-------~~~E~v~lIr~~sLmNrG~Yq~ALl---~~----~~~~~pdL~p~~AL~a--~klGL 84 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG-------EMEEVVALIRLSSLMNRGDYQEALL---LP----QCHCYPDLEPWAALCA--WKLGL 84 (116)
T ss_dssp -HHHHHHHHHHHHHTT-------TTHHHHHHHHHHHHHHTT-HHHHHH---HH----TTS--GGGHHHHHHHH--HHCT-
T ss_pred HHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHhhHHHHHHHH---hc----ccCCCccHHHHHHHHH--Hhhcc
Confidence 4566666666665543 1222233333445566777777621 11 2334566666655533 35666
Q ss_pred HHHHHHHHHHHHhCC
Q 048807 424 IEKGLELFHLMKQEG 438 (757)
Q Consensus 424 ~~~A~~~~~~m~~~g 438 (757)
.+++...+.++...|
T Consensus 85 ~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 85 ASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHhCC
Confidence 666666666655543
No 422
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.36 E-value=7.3e+02 Score=29.81 Aligned_cols=111 Identities=10% Similarity=0.030 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048807 616 PTVVTYGALIHAFCVNGHVDE-AMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNA 694 (757)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 694 (757)
++..+-...+.++...+..+. +...+..+.+ .+|...-...+.++.+.|..+.+...+..+.+ .++...=..
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~ 826 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQG 826 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHH
Confidence 444555555555555544322 2233333332 14455555555666666554444333434433 234333344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEA 737 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 737 (757)
.+.++.+.+. +++...+..+++ +|+..+-...+.++.+.
T Consensus 827 Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 827 AARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhcc
Confidence 4455555443 345455555542 45555555555555543
No 423
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.74 E-value=67 Score=18.77 Aligned_cols=29 Identities=7% Similarity=-0.008 Sum_probs=15.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLN 302 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 302 (757)
|+.+.|..+|+++++..+ .+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 345666666666665433 34555554443
No 424
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.27 E-value=5.2e+02 Score=27.79 Aligned_cols=413 Identities=9% Similarity=0.030 Sum_probs=212.0
Q ss_pred HHHHHHcC--ChhHHHHHHHHHHHCCCCC--ccchHHHHHHHH-HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH
Q 048807 301 LNALGREG--DFKRMNQLFTEMKENDIEP--SVVTFGTIINRL-CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT 375 (757)
Q Consensus 301 i~~~~~~g--~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
.+.+...| +...+++.++......++. ...|...+...+ .-..+++.|..-+++........+.....--.++..
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~Sl 93 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASL 93 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHH
Confidence 34444455 5666666666655543211 122333333332 335678888888887654321111111222346778
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 376 LIDGLCKVG-KQEEALGLIEQMRLRLQKGCMP-NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGM 453 (757)
Q Consensus 376 li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (757)
|.+.|+... .+..|..++.+.... ..+.+- .-.....|+..+.-..++..|.+++.---+. -.+-...|..++..+
T Consensus 94 La~lh~~~~~s~~~~KalLrkaiel-sq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftl 171 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIEL-SQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTL 171 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHH-hcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHH
Confidence 888898877 788888888876532 222220 1112234666777788999998885432221 111222333222211
Q ss_pred ------HH---cCChHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcCCHHHHHHHHHHHHHc---CCC---
Q 048807 454 ------CR---HGRINSAVEFFQEVTRKGLCANAVT------Y--TILITAFCNVNNFQEAIKWFDDMSRA---GCS--- 510 (757)
Q Consensus 454 ------~~---~g~~~~A~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~g~~~~A~~~~~~m~~~---~~~--- 510 (757)
.. ..++..+.....+|.+. ..+|..- | +.-+.-|.-.|+...+...++++.+. +.+
T Consensus 172 s~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~ 250 (629)
T KOG2300|consen 172 SMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSR 250 (629)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCC
Confidence 11 22334445555555554 3334421 1 22234566778877777777765432 111
Q ss_pred ---------CCH--hhH--H----HH-----HHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHH--------HHH
Q 048807 511 ---------ADS--VVY--F----TL-----ISGLCQAGRMNDASLVVSKLKEA----GFRP-DIVCYN--------HLI 555 (757)
Q Consensus 511 ---------~~~--~~~--~----~l-----i~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~--------~li 555 (757)
|.. ..| + .| ...-...|-+++|.++-++++.. ...+ ....++ .++
T Consensus 251 ~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv 330 (629)
T KOG2300|consen 251 GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIV 330 (629)
T ss_pred CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 111 111 0 00 00011234455555544443322 1111 222221 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCC--H-----HHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHH--HHH
Q 048807 556 SGFCKKKMLDKAYEVLQEMEDIGM-TPN--S-----VTYNTLIS-FLSKSGNFSAARRVLKKMVKEGLVPTVVTY--GAL 624 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~-----~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~l 624 (757)
-+=.-.|++.+|++-...|.+--. .|. . .....++. .++.-+.++.|..-|....+.--.-|...+ ..+
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 222347999999998888875311 222 1 11223333 345678899999999888875433344333 234
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--
Q 048807 625 IHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIY----------NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY-- 692 (757)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~----------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-- 692 (757)
...|.+.|+-+.-.++++.+-- +|..++ -.-+-...+.+++.||..++.+-.+.. |..-+
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p-----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---naed~~r 482 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGP-----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---NAEDLNR 482 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCC-----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---chhhHHH
Confidence 5568888888887777776543 222211 111122346899999999999987632 33322
Q ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH
Q 048807 693 ------NAMFKGLRQKNMLDKAFKLMDRMIEH-ACHPDY 724 (757)
Q Consensus 693 ------~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~ 724 (757)
..|...+..-|+..++.+...-..+. .--||.
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 23334456678888888877665432 124665
No 425
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.67 E-value=4.3e+02 Score=26.72 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCCC----HH
Q 048807 409 VTYNCLINGFCKSGNIEKGLELFHLMKQ----EGVTPNVVTLNTLVD-GMCRHGRINSAVEFFQEVTRKGLCAN----AV 479 (757)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~----~~ 479 (757)
..+......||+-|+-+.|++.+++..+ .|.+.|++.+..-+. .|....-+.+-++..+.+.+.|...+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3444555566666666666666554443 245555544433222 22222223333333444444443322 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
+|..+- +....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 333322 2233467777777666543
No 426
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.13 E-value=1.7e+02 Score=24.88 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 048807 672 LALSLMEEMKVKEVRPNTN-TYNAMFKGLRQKNMLDKAFKLMD 713 (757)
Q Consensus 672 ~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 713 (757)
+..++|..|..+|+--... -|......+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566677777666544433 44556666667777777777665
No 427
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.61 E-value=63 Score=34.13 Aligned_cols=99 Identities=21% Similarity=0.237 Sum_probs=45.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 048807 559 CKKKMLDKAYEVLQEMEDIGMTPNSVTY-NTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDE 636 (757)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 636 (757)
.+.+.++.|..++.++++. .|+.+.| ..-..++.+.+++..|+.=+.++++.. |+ ...|..-..++.+.+.+.+
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 3445555566666555555 2333222 222245555555555555555555432 21 1222222333444455555
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 637 AMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 637 A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
|+..|+.... +.|+..-..-.+.-|
T Consensus 91 A~~~l~~~~~---l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKK---LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhh---cCcCcHHHHHHHHHH
Confidence 5555555443 334444444444333
No 428
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.40 E-value=3.8e+02 Score=25.70 Aligned_cols=142 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLME 678 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 678 (757)
..+-..+++.+...+.. +..-...+...+...+.... ....++.....++ |....-.+-+-.+...+++++|++.+
T Consensus 26 ~~~L~~Ll~~i~~~~~~-~~~K~~l~~YlLlD~~~~~~-~~~~~~Fa~~f~i-p~~~~~~~~g~W~LD~~~~~~A~~~L- 101 (226)
T PF13934_consen 26 DNDLRALLDLILSSNVS-LLKKHSLFYYLLLDLDDTRP-SELAESFARAFGI-PPKYIKFIQGFWLLDHGDFEEALELL- 101 (226)
T ss_pred HHHHHHHHHHHhcCCcC-HHHhHHHHHHHHHhcCcccc-ccHHHHHHHHhCC-CHHHHHHHHHHHHhChHhHHHHHHHh-
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 679 EMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 679 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
.+-.+.|+-... ++.++...|+.+.|..+++.. +..++..--..+.......|.+.||..+.+..+
T Consensus 102 --~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~---~p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 102 --SHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAV---GPPLSSPEALTLYFVALANGLVTEAFSFQRSYP 167 (226)
T ss_pred --CCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhc---CCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCc
No 429
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.97 E-value=4.5e+02 Score=26.39 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048807 412 NCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
..++..+.+.++..+..+.+..+.. ...-...+..+...|++..|++++.+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3345555555555555555555542 33344555666677777777777766554
No 430
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.84 E-value=1.2e+02 Score=25.02 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777776665
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.82 E-value=3.9e+02 Score=25.66 Aligned_cols=151 Identities=13% Similarity=0.206 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc
Q 048807 588 TLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN 667 (757)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 667 (757)
.-+..|.+.-++.-|....++..+ | ..+..+++ -|.+..+.+--.++.+-... .+++-+..-..+++ +...
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~-Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAIL-RYSKLSDQQILKRLLEVAKA-EKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhh-hhcccCHHHHHHHHHHHHHH-hCCCCCcchHHHhh--hhcc
Confidence 345556666666666666666554 1 22333332 24444433333333332222 34443333344333 4567
Q ss_pred CCHHHHHHHHHHHHh-CC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048807 668 NQVELALSLMEEMKV-KE-----------VRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLS 735 (757)
Q Consensus 668 g~~~~A~~~~~~m~~-~g-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 735 (757)
|+..+|+..++.-.. .| -.|.+.....++..| ..+++++|.+++.++-+.|+.|...+ +++.+.+.
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~K 283 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDII-TTLFRVVK 283 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH
Confidence 888888888776542 11 256777777777655 45789999999999999999987633 23444443
Q ss_pred hcCCHHHHH--HHHhhc
Q 048807 736 EAGQTEKLK--KFVQGY 750 (757)
Q Consensus 736 ~~g~~~~A~--~~~~~~ 750 (757)
... +.|-. +++++.
T Consensus 284 ~~~-~~E~~rlE~ikei 299 (333)
T KOG0991|consen 284 NMD-VAESLRLEFIKEI 299 (333)
T ss_pred hcc-HHHHHHHHHHHHH
Confidence 332 44444 555554
No 432
>PHA02875 ankyrin repeat protein; Provisional
Probab=35.40 E-value=5.6e+02 Score=27.10 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=33.4
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCChhHHHHHHH
Q 048807 246 LVSKFAEHGVFPNAVW--LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAA--SCNALLNALGREGDFKRMNQLFT 318 (757)
Q Consensus 246 ~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 318 (757)
++..+.+.|..++... ..+.+...++.|+.+-+ +.+.+.|..++.. ...+-+...++.|+.+.+..+++
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 3444556676554322 23344555667776543 3334445443321 11223445556677766544443
No 433
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.20 E-value=2.4e+02 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=11.9
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 048807 302 NALGREGDFKRMNQLFTEMKE 322 (757)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~m~~ 322 (757)
..|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 445555666666666655554
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.02 E-value=1.6e+02 Score=28.80 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=7.7
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 048807 627 AFCVNGHVDEAMKIFKEL 644 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~~~ 644 (757)
-|.+.|++++|.++|+.+
T Consensus 187 ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 344444444444444433
No 435
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.94 E-value=1.5e+02 Score=20.11 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=15.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048807 701 QKNMLDKAFKLMDRMIEHACHPDYISMEIL 730 (757)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 730 (757)
+.|..+++...+++|.+.|+.-+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 445555555555555555555444444433
No 436
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.89 E-value=5.3e+02 Score=26.29 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048807 564 LDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK------SGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEA 637 (757)
Q Consensus 564 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 637 (757)
++++..++++....+ .|........|.++.. .-+|..-..+|+-+......| +++.|.-+ +..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHhH
Confidence 455666666665555 3555555544444321 124555555565555543222 22333222 23333345555
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 638 MKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 638 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+.+.+.+.....+.--...+..-.+.+.+.|+.++|..-|++...
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 555555544222221122234445556666666666666666665
No 437
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.26 E-value=29 Score=34.79 Aligned_cols=117 Identities=11% Similarity=0.092 Sum_probs=69.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 048807 595 KSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTV-IYNILIDSLCKNNQVELA 673 (757)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A 673 (757)
..|.+++|++.|...+..+ ++....|..-..++.+.++...|++-+....+ +.||.. -|-.-..+-.-.|+|++|
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchHHH
Confidence 4577777777777777653 33455566666667777777777777776655 344432 233334444456777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 674 LSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 674 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
...+....+.++.+....| +=...-+.+..++-...+++..+
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 7777777776554433322 23334445555555555555544
No 438
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.09 E-value=2.5e+02 Score=22.26 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP-TVVTYGALIHAFCVNGH 633 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~ 633 (757)
|.|......+...+...|++++|++.+-++++..... +...-..|+..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4455555566666666666666666666666543222 23344444444444443
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.09 E-value=2.1e+02 Score=27.86 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMKV----KEV-RPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
...+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.++.+.+.-++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34567778888888888888888752 121 1233445566666777777777766655543
No 440
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.27 E-value=86 Score=31.16 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 048807 412 NCLINGFCKSGNIEKGLELFHLMKQEGVT 440 (757)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (757)
+..|....+.||+++|+.++++..+.|..
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 35555555555555555555555555543
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.86 E-value=3.8e+02 Score=31.07 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 048807 589 LISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m 609 (757)
|..-...+|.++.|.+++.+-
T Consensus 912 L~adhvaAGsf~tA~~lL~dq 932 (1202)
T KOG0292|consen 912 LAADHVAAGSFETAMRLLHDQ 932 (1202)
T ss_pred chhhhhhcCchHHHHHHHHhh
Confidence 444566778888888887754
No 442
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.15 E-value=6.5e+02 Score=28.86 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC---CC----------CCHHHHHHHHHHH
Q 048807 599 FSAARRVLKKMV-KEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSN---VS----------PNTVIYNILIDSL 664 (757)
Q Consensus 599 ~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~----------p~~~~~~~li~~~ 664 (757)
.++....+.+.. +.|+..+......++... .|+...|+.+++++.. ++ +. .+......+++++
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia-~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA-LGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 355555555544 457776777666666433 6899999999988765 22 11 1112223344444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC
Q 048807 665 CKNNQVELALSLMEEMKVKEVR 686 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~ 686 (757)
.+ ++...++.+++++...|+.
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCC
Confidence 33 6677777777777766543
No 443
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.93 E-value=78 Score=23.30 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGRE 307 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 307 (757)
.|....++.++..+++-.-.++++..++++.+.|. .+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34555777788888877778888888888887775 3667777777766664
No 444
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.84 E-value=5.3e+02 Score=26.40 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048807 671 ELALSLMEEMKVKEVRPNT----NTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLS 735 (757)
Q Consensus 671 ~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 735 (757)
++.+.++..++.. -|+. ..|.+++......|.+++.+.+|++++..|-.|-...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455555555442 3443 3455666666666666666666666666666665555555555544
No 445
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=30.29 E-value=6.9e+02 Score=26.55 Aligned_cols=537 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcc--cHHHHHHH
Q 048807 150 SATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNEL--TGDIVFYA 227 (757)
Q Consensus 150 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~--~~~~~~~~ 227 (757)
....++.-|...|++.-|..-+.++-...-.++---.|+++-...++-++-..-+---.--..++.|+.+ -+..++..
T Consensus 52 ~~~sii~eyfstgdv~vaa~dl~elg~seyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~s 131 (645)
T KOG0403|consen 52 KAVSIIDEYFSTGDVVVAASDLKELGSSEYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLES 131 (645)
T ss_pred HHHHHHHHHccCCCchhhHHHHHHhccccccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Q ss_pred HHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048807 228 LMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGRE 307 (757)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 307 (757)
.- .-....-.|+..+..++.+.+..+.--=..|..+---.-+..+..++.....+. .......+-+.....--
T Consensus 132 ~d-----dl~vdipdavnvlalfiaraivddilpp~fl~r~~k~lp~~skg~qV~~~aeks--ylsap~hae~ve~~wGg 204 (645)
T KOG0403|consen 132 AD-----DLAVDIPDAVNVLALFIARAIVDDILPPAFLKRAKKLLPDSSKGFQVINTAEKS--YLSAPHHAELVELFWGG 204 (645)
T ss_pred cc-----cceecCchHHHHHHHHHHHHHHHhccChHHHHHHHhhCCCcccchhHHHHHHhh--ccCCCchhhHHHhhhCC
Q ss_pred CChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHH
Q 048807 308 GDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQE 387 (757)
Q Consensus 308 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 387 (757)
.....+.++-.++-. ++.-|...|+..+|.+..+++... +..+...-.+++.+....-.-.
T Consensus 205 ~~n~t~EEvK~kIn~------------~l~eyv~~getrea~rciR~L~vs-------ffhhe~vkralv~ame~~~ae~ 265 (645)
T KOG0403|consen 205 ETNATVEEVKNKING------------NLIEYVEIGETREACRCIRELGVS-------FFHHEGVKRALVDAMEDALAEG 265 (645)
T ss_pred CccccHHHHHHHHHH------------HHHHHHHcccHHHHHHHHHHhCCC-------chhhHHHHHHHHHHHhhhhccc
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 048807 388 EALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG--------NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRI 459 (757)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (757)
-.+.++.+.. ..+..+-..+..++.+.+ +.-.|...|+.+....+.-+--.-+++-..-...|+.
T Consensus 266 l~l~llke~~-------e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~ 338 (645)
T KOG0403|consen 266 LTLKLLKEGR-------EEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDS 338 (645)
T ss_pred ceeccchhhh-------hhcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcc
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 460 NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKL 539 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (757)
+. .+.|++-... +|+-|...|+..+..+.++++-.....|-...+..-+..-.++..-+.|..++..+
T Consensus 339 e~-~r~Fkk~~~~-----------IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L 406 (645)
T KOG0403|consen 339 EN-LRAFKKDLTP-----------IIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDL 406 (645)
T ss_pred hH-HHHHHHhhHH-----------HHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHh
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---
Q 048807 540 KEAGFRPDIVCYNHLISGFCKKKMLD----KAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE--- 612 (757)
Q Consensus 540 ~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 612 (757)
.-. +-+....-+.+...+-...+.. .|-+.+...+.+-+-.+...-..|=....+..-...+.+.++.+...
T Consensus 407 ~~e-~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsa 485 (645)
T KOG0403|consen 407 HGE-VFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSA 485 (645)
T ss_pred hcc-cCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHH
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048807 613 ------------------GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELAL 674 (757)
Q Consensus 613 ------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 674 (757)
.+..-..-...|+.-|...|++.+|.+.++++-- ..-...+.+.+++.+.-+.|+-..-+
T Consensus 486 r~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~l 563 (645)
T KOG0403|consen 486 RHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMIL 563 (645)
T ss_pred hhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHH
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048807 675 SLMEEMKVKEVRPNTNTYNAMFKGLRQKN--------MLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQ 739 (757)
Q Consensus 675 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 739 (757)
.++++.-.. ...|-+.|-.+|.+-. +.-.|.+-|+...+. ..-+...|..|-+.|-..++
T Consensus 564 dLLk~cf~s----glIT~nQMtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve~-~~~~G~i~~~l~~~~~s~l~ 631 (645)
T KOG0403|consen 564 DLLKECFKS----GLITTNQMTKGFERVYDSLPDLSLDVPNAYEKFERYVEE-CFQNGIISKQLRDLCPSRLR 631 (645)
T ss_pred HHHHHHHhc----CceeHHHhhhhhhhhhccCcccccCCCcHHHHHHHHHHH-HHHcCchhHHhhhcchhhhc
No 446
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.26 E-value=1.1e+03 Score=28.75 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 048807 332 FGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTY 411 (757)
Q Consensus 332 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 411 (757)
|..+++.+-+.+-.|.+.++-..+++.-... .+.-..+++.+.+-....|.+-+|...+-+.. . ...-....
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd---~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---d--serrrdcL 1057 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDD---NPSVALISTTVFNHHLDLGHWFQAYKAILRNP---D--SERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---chhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---c--HHHHHHHH
Confidence 5566677777788888888887777652100 12224456777777777888888777655431 0 01112345
Q ss_pred HHHHHHHHHcCCHHH------------HHH-HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 048807 412 NCLINGFCKSGNIEK------------GLE-LFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEF 465 (757)
Q Consensus 412 ~~li~~~~~~g~~~~------------A~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 465 (757)
..++-.++..|.++. ..+ +++..-..........|..|-..+...+++.+|-.+
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 566666677766533 222 222222221111223456666666677777776543
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.09 E-value=3.7e+02 Score=24.70 Aligned_cols=48 Identities=10% Similarity=0.234 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhcCCCCCC-H-H-----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 634 VDEAMKIFKELSSSSNVSPN-T-V-----IYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~-~-~-----~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
++.|+.+|+.+.+.... |+ . . .-...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~-~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSL-PETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 56777777777663221 21 1 0 112334456666777777777766665
No 448
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.06 E-value=1.8e+02 Score=19.75 Aligned_cols=33 Identities=6% Similarity=0.160 Sum_probs=22.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 664 LCKNNQVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 664 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
..+.|-.+++..++++|.+.|+.-+...|..++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 345677777777777777777777766666554
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.95 E-value=99 Score=30.74 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=26.8
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 651 SPNTV-IYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 651 ~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 692 (757)
.||.. .|+..|..-.+.|++++|+.++++..+.|+.--..+|
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34444 3567777777777777777777777777655444444
No 450
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.20 E-value=7.2e+02 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=11.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH
Q 048807 527 GRMNDASLVVSKLKEAGFRPDIV 549 (757)
Q Consensus 527 g~~~~A~~~~~~~~~~g~~~~~~ 549 (757)
.+.+.|+..+..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 45555555555555555444433
No 451
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.91 E-value=5.2e+02 Score=24.69 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP---TVVTYG--ALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
.++..-+|.|+--|.-...+.+|-+.|..-. |+.| |..+++ .-|......|++++|+.....+.. .-+..|.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P-eiLd~n~ 99 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP-EILDTNR 99 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh-HHHccch
Confidence 5566667777777766666677777665443 3443 444433 345667889999999999988754 2344454
Q ss_pred HHHHHHH----HHHHhcCCHHHHHHHHHHHHh
Q 048807 655 VIYNILI----DSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 655 ~~~~~li----~~~~~~g~~~~A~~~~~~m~~ 682 (757)
..+-.|. --+.+.|..++|+++.+.=..
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 3322221 123567888888888876543
No 452
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=28.90 E-value=6.1e+02 Score=25.46 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 048807 548 IVCYNHLISGFCKKKMLDKAY 568 (757)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~ 568 (757)
..+|.-|+.++|..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345788888888888876553
No 453
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=28.84 E-value=1.5e+02 Score=29.45 Aligned_cols=79 Identities=9% Similarity=-0.021 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHCCCCCccchHH
Q 048807 255 VFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNA-LLNALGREGDFKRMNQLFTEMKENDIEPSVVTFG 333 (757)
Q Consensus 255 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 333 (757)
++.|+..|...+.--.+.|.+.+.-.+|.++.+..|. |+..|-. -..-|...++++.+..+|...++.+ +.++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 5678888888888778888999999999999988754 7777765 3345667889999999999888775 44556665
Q ss_pred HH
Q 048807 334 TI 335 (757)
Q Consensus 334 ~l 335 (757)
..
T Consensus 181 ey 182 (435)
T COG5191 181 EY 182 (435)
T ss_pred HH
Confidence 43
No 454
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.79 E-value=3.6e+02 Score=31.20 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHH
Q 048807 298 NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLI 377 (757)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li 377 (757)
-++|..+.+.|-.+-|+...+ |..+- .......|+++.|++.-.++ .|..+|..|+
T Consensus 624 qaiIaYLqKkgypeiAL~FVk---------D~~tR---F~LaLe~gnle~ale~akkl------------dd~d~w~rLg 679 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVK---------DERTR---FELALECGNLEVALEAAKKL------------DDKDVWERLG 679 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeec---------Ccchh---eeeehhcCCHHHHHHHHHhc------------CcHHHHHHHH
Confidence 346666777777777776543 33332 22345779999988876654 3677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 378 DGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHG 457 (757)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (757)
..-...|+.+-|+..|++.+ .|+.|--.|.-.|+.++-.++.+....++ |..+.. . ...-.|
T Consensus 680 e~Al~qgn~~IaEm~yQ~~k------------nfekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~~-q--nalYl~ 741 (1202)
T KOG0292|consen 680 EEALRQGNHQIAEMCYQRTK------------NFEKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQF-Q--NALYLG 741 (1202)
T ss_pred HHHHHhcchHHHHHHHHHhh------------hhhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHHH-H--HHHHhc
Confidence 99999999999999988874 24555556777888888777777665542 322211 1 112257
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 458 RINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 458 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
+.++-.+++...-.. + ..|-. -...|.-++|.++.++....
T Consensus 742 dv~ervkIl~n~g~~----~-laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 742 DVKERVKILENGGQL----P-LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred cHHHHHHHHHhcCcc----c-HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 777766665543221 2 12211 23467778888888877653
No 455
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.60 E-value=5.4e+02 Score=24.83 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=16.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 555 ISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFL 593 (757)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 593 (757)
+..+.+.|++++..+.++++.+.+...+..-.+.|..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 334444555555555555555444333433333333333
No 456
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.49 E-value=6.6e+02 Score=25.41 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=60.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHH--HHHHHHHHhcCCHHH
Q 048807 595 KSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIY--NILIDSLCKNNQVEL 672 (757)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~ 672 (757)
...-+.+|.++|++.++.+ ..+|+ --+.+...|...+|. .+ ...++.+| .-|.-+-.+.|+..+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr-~sqq~qh~~~~~da~------~r---RDtnvl~YIKRRLAMCARklGrlrE 293 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYR-QSQQCQHQSPQHEAQ------LR---RDTNVLVYIKRRLAMCARKLGRLRE 293 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHh-hHHHHhhhccchhhh------hh---cccchhhHHHHHHHHHHHHhhhHHH
Confidence 3445778889998888753 22333 112233333333332 12 12344444 344555567899999
Q ss_pred HHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 673 ALSLMEEMKVKEVRPNTN---TYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 673 A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
|.+.|+.+.+. .|=.. .-..|+.+|....-+.+...++-+.-+
T Consensus 294 A~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 294 AVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999998763 33222 234577777776666666666555543
No 457
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=27.26 E-value=1.5e+02 Score=18.70 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 048807 692 YNAMFKGLRQKNMLDKAFKLMD 713 (757)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~ 713 (757)
+-.+.-.+...|++++|+++++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3445556667777777777743
No 458
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=27.13 E-value=4.2e+02 Score=23.03 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 582 NSVTYNTLISFLSKSG---NFSAARRVLKKMVKEGL-VPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 582 ~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
...+--.+..++.+.. +..+.+.++++..+... .-.......|.-++.+.++++++.++.+.+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333334444444433 34555666666664211 11122222344456666666666666666655
No 459
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.77 E-value=2.7e+02 Score=28.17 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDA---PLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
|.-=.+-|.+..++..|...|.+-++... ..+.+.|+.-..+-...|++..|+.=....+... +-....|..-..+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHH
Confidence 44456778899999999999999887643 3456788888888888899999998888887764 2233444444556
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 048807 339 LCKLYRADEALEVFEKMIA 357 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~ 357 (757)
+....++.+|..+.+....
T Consensus 163 ~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 6677777777777776543
No 460
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.59 E-value=3.2e+02 Score=21.54 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=17.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 048807 272 KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKR 312 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 312 (757)
.|+.+.|.+++..+. +|+ ..|...+.++...|.-.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 49 HGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHEL 84 (88)
T ss_pred cCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhh
Confidence 355555555555555 432 234455555555544433
No 461
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.41 E-value=5.3e+02 Score=23.96 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=8.4
Q ss_pred cCCHHHHHHHHHHHHh
Q 048807 421 SGNIEKGLELFHLMKQ 436 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~ 436 (757)
.|+++.|.+.++-|.+
T Consensus 134 ~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 134 KGSFEEAERFLKFMEK 149 (204)
T ss_pred hccHHHHHHHHHHHHH
Confidence 4555555555555543
No 462
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.71 E-value=3.1e+02 Score=24.09 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 298 NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
..++..+.+.++.-.|.++|+++.+.+..-+..|....+..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555555555555555555555543333333333334443333
No 463
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.70 E-value=4.5e+02 Score=29.39 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhCCCCCCHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIE------KGLELFHLMKQEGVTPNVVTLNT 448 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~ 448 (757)
+|..+|...|++-.+.++++..... .+|.+.-...||..|+...+.|.++ .|.+++++.. +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~-~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDH-NKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 7889999999999999999988643 4454555678899999999999753 4445555444 4447778887
Q ss_pred HHHHHHH
Q 048807 449 LVDGMCR 455 (757)
Q Consensus 449 li~~~~~ 455 (757)
|+.+-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 7765443
No 464
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.49 E-value=9.1e+02 Score=26.56 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 048807 263 TQLITRFCRKGKTDEAWDVLHVLM 286 (757)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~ 286 (757)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 357788999999999999998875
No 465
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.42 E-value=8.8e+02 Score=28.25 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC--CC----------CCHHHHHHHHHHHH
Q 048807 599 FSAARRVLKKMV-KEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSN--VS----------PNTVIYNILIDSLC 665 (757)
Q Consensus 599 ~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~----------p~~~~~~~li~~~~ 665 (757)
.++..+.+++.. +.|+..+......++. ...|+...|+.++++.....+ +. .+...+..+++.+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 456666666654 3566666666555543 447999999999887664111 10 1222223333333
Q ss_pred hcCCHHHHHHHHHHHHhCCCC
Q 048807 666 KNNQVELALSLMEEMKVKEVR 686 (757)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~g~~ 686 (757)
..|+..+++.+++++...|+.
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLS 277 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 336667777777776665543
No 466
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.34 E-value=9.4e+02 Score=26.50 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=48.5
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-C------------CCHHHHHHHHHHHH
Q 048807 600 SAARRVLKKM-VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV-S------------PNTVIYNILIDSLC 665 (757)
Q Consensus 600 ~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~------------p~~~~~~~li~~~~ 665 (757)
++....+... .+.|+..+......++.. ..|+...|..+++++.. ++- . ++......+++++.
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia-~~~~~It~~~V~~~lg~~~~~~i~~ll~al~ 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIA-YGNGKVLIADVKTMLGTIEPLLLFDILEALA 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHh-cCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3434444443 345776666666555543 36899999999887665 321 0 11222233344433
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 048807 666 KNNQVELALSLMEEMKVKEVRPN 688 (757)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~g~~p~ 688 (757)
.|+.+.++.++++|...|..|.
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 -AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred -cCCHHHHHHHHHHHHHcCCCHH
Confidence 3677777777777777765544
No 467
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.20 E-value=1.3e+02 Score=22.14 Aligned_cols=32 Identities=0% Similarity=0.010 Sum_probs=16.5
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
....++.++..+++..-.++++..+.++...|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444555555555555555555555555544
No 468
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.07 E-value=1.6e+02 Score=18.17 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYN 693 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~ 693 (757)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3444444444444 234444443
No 469
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.99 E-value=4e+02 Score=28.18 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKE--G----LVP-TVVTYGALIHAFCVNGHVDEAMKIFKE 643 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~--~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 643 (757)
..|+..++-.||+..|+++++.+.-. + +++ .+.++--+.-+|...+++.+|.+.|..
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777776655321 1 111 233455556666666777777776654
No 470
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.95 E-value=9.7e+02 Score=26.51 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=87.6
Q ss_pred cCChhHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHHHHH-------HCCCCC------
Q 048807 272 KGKTDEAWDVLHVLMKFDAP-----------LEAASCNALLNALGREGDFKRMNQLFTEMK-------ENDIEP------ 327 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~g~~p------ 327 (757)
...+++|...|.-......+ -.+.+.-.+..++..+|+.+.|..+.++.+ .-.+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 44566777777766654321 134567777788889999888777666543 211111
Q ss_pred -------ccchHHH---HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 048807 328 -------SVVTFGT---IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK-VGKQEEALGLIEQM 396 (757)
Q Consensus 328 -------~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 396 (757)
|..-|.+ -+..+.+.|.+..|.++..-+.+.+ ..-|+.....+|+.|+- ..+++--+++++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd------p~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD------PSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1112222 2344566788888888877777755 23366666777777663 45566666666655
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh
Q 048807 397 RLRLQKGCMPNAVTYNCLINGFCKSGN---IEKGLELFHLMKQ 436 (757)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~ 436 (757)
.....-..-||-.-=.+++..|..... -+.|...+.++..
T Consensus 405 e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 405 ENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 321111223443333344444544443 3444555554444
No 471
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=24.91 E-value=4e+02 Score=22.03 Aligned_cols=79 Identities=5% Similarity=-0.063 Sum_probs=50.2
Q ss_pred CCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHH
Q 048807 126 RMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLD 205 (757)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 205 (757)
....++|..+.+.....+- ....+.-..+..+.+.|++++| +........||...|-+|-. .+.|.-+++...+.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3446788888888776552 2334444556778999999999 33333334566666765554 68899999998888
Q ss_pred HHHh
Q 048807 206 EMLD 209 (757)
Q Consensus 206 ~m~~ 209 (757)
++-.
T Consensus 94 rla~ 97 (116)
T PF09477_consen 94 RLAS 97 (116)
T ss_dssp HHCT
T ss_pred HHHh
Confidence 7754
No 472
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.61 E-value=1.2e+03 Score=27.38 Aligned_cols=78 Identities=13% Similarity=0.247 Sum_probs=48.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLEA--ASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
-..|...|+++.|.+.-+.- |+. .++..-.+.|.+.++|..|.++|.++.+ .|..+.--+....
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcC
Confidence 34677889999998865432 232 3444455677888899999999988844 2444444455555
Q ss_pred ChhHHHHHHHHHHh
Q 048807 344 RADEALEVFEKMIA 357 (757)
Q Consensus 344 ~~~~A~~~~~~~~~ 357 (757)
+.+.-..++.+-++
T Consensus 431 ~~~~L~~~L~KKL~ 444 (911)
T KOG2034|consen 431 QERALRTFLDKKLD 444 (911)
T ss_pred CHHHHHHHHHHHHh
Confidence 55533333343333
No 473
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=24.52 E-value=6e+02 Score=25.91 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN--TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT-NTYNA 694 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 694 (757)
...|--=.+-|.+..++..|...|.+-.+..--.|| .+.|+.-..+-...|++..|+.=-...+.. .|+. ..|..
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhh
Confidence 345556677788888999999999887763333343 467887777777889999998888877763 5554 35555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
-..++....++++|....++.++
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Confidence 56677788888888888877753
No 474
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.45 E-value=8.3e+02 Score=26.63 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 600 SAARRVLKKMV-KEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 600 ~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
++..+.++... ..|+..+......++ -...|+...|+.+++++..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia--~~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIA--KKGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCChHHHHHHHHHHHHH
Confidence 44455555543 356766666665554 3456999999999988654
No 475
>PRK09857 putative transposase; Provisional
Probab=24.41 E-value=5.3e+02 Score=25.93 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=35.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 660 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
++.-..+.|+.++-.++++.+.+. .++......++..-+.+.|.-++++++..+|+..|+.++.
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 333334455555555555555443 2233334445556666666666777777888777766553
No 476
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.24 E-value=7.8e+02 Score=27.88 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=47.7
Q ss_pred HHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-------------CCHHHHHHHHHHH
Q 048807 599 FSAARRVLKKM-VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVS-------------PNTVIYNILIDSL 664 (757)
Q Consensus 599 ~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------p~~~~~~~li~~~ 664 (757)
.++..+.+.+. .+.|+..+......++. ...|+...++.+++++.. ++-. .+......+++++
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia-~~~~~It~~~V~~~Lg~~~~~~i~~LldaL 261 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIA-FGSGQLQEAAVRQMLGSVDRSHVFRLIDAL 261 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444455443 45677777766666654 446889999888877654 2211 1122223344444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC
Q 048807 665 CKNNQVELALSLMEEMKVKEVR 686 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~ 686 (757)
.. |+...++.+++++.+.|..
T Consensus 262 ~~-~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 262 AQ-GDGRTVVETADELRLNGLS 282 (618)
T ss_pred Hc-CCHHHHHHHHHHHHHcCCC
Confidence 33 6677777777777766544
No 477
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=24.11 E-value=3.6e+02 Score=21.27 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=6.6
Q ss_pred CChHHHHHHHHHHH
Q 048807 457 GRINSAVEFFQEVT 470 (757)
Q Consensus 457 g~~~~A~~~~~~~~ 470 (757)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 478
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=1.3e+03 Score=27.49 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE-HACHPDYISMEILTEWLSEAGQTEKLKKFVQ 748 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (757)
.+.-.+.|.++...--..|..+|..-.+-+...|++-.|.+++.++++ .|-.++...|..++..|...|- +--..+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw-~H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW-NHLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc-hHhHHHHh
Confidence 344455555655432234566666666667788999999999999976 3567777888878777777763 34444444
Q ss_pred h
Q 048807 749 G 749 (757)
Q Consensus 749 ~ 749 (757)
.
T Consensus 1291 ~ 1291 (1304)
T KOG1114|consen 1291 N 1291 (1304)
T ss_pred h
Confidence 4
No 479
>PRK09857 putative transposase; Provisional
Probab=23.70 E-value=7.6e+02 Score=24.82 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT 617 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 617 (757)
.++....+.++.++-.++++.+.+. .+.......++..-+.+.|.-+++.++..+|+..|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3343334555555556666555544 233333444555666666666667777777777765543
No 480
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=23.40 E-value=5e+02 Score=22.60 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 615 VPTVVTYGALIHAFCVNG---HVDEAMKIFKELSSSSNVS-PNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT 689 (757)
Q Consensus 615 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 689 (757)
.+...+-..+..++.+.. +..+.+.+++.+.+ ...+ ......-.|.-++.+.+++++++++.+.+.+. .||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCc
Confidence 345555556666666554 35566777777765 1111 11222233455677777888888777777764 4443
No 481
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.33 E-value=1.2e+03 Score=27.20 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 378 DGLCKVGKQEEALGLIEQMRLRLQKGCMPNA--VTYNCLINGFCKSGNIEKGLELFHLMK 435 (757)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (757)
..|...|++++|++.-.. +|+. ..+..-.+.|.+.+++..|-+++.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~---------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART---------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccC---------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 356667888888775432 2221 234444566777778888888887774
No 482
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.23 E-value=66 Score=32.43 Aligned_cols=86 Identities=12% Similarity=-0.025 Sum_probs=62.3
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc-chHHHHHHHHHhcCChhHHH
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV-VTFGTIINRLCKLYRADEAL 349 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~ 349 (757)
..|.++.|++.|...++.++. ....|..-..++.+.+....|++=+....+.+ ||. ..|-.-..+-.-.|.+++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 457788999999888887644 66777777788888888888888888777753 443 22333333344578889999
Q ss_pred HHHHHHHhCC
Q 048807 350 EVFEKMIAGK 359 (757)
Q Consensus 350 ~~~~~~~~~~ 359 (757)
..|+...+.+
T Consensus 203 ~dl~~a~kld 212 (377)
T KOG1308|consen 203 HDLALACKLD 212 (377)
T ss_pred HHHHHHHhcc
Confidence 9888887766
No 483
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=23.14 E-value=8e+02 Score=27.71 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-------------CCCHHHHHHHHHHH
Q 048807 599 FSAARRVLKKMV-KEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV-------------SPNTVIYNILIDSL 664 (757)
Q Consensus 599 ~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------~p~~~~~~~li~~~ 664 (757)
.++....+.+.. +.|+..+......++. ...|+...+...++++.. .+- ..+......++.+.
T Consensus 193 ~~el~~~L~~i~~kegi~i~~eAl~lIa~--~a~Gdlr~al~~Ldkli~-~g~g~It~e~V~~llg~~~~~~if~L~~ai 269 (598)
T PRK09111 193 ADVLAAHLSRIAAKEGVEVEDEALALIAR--AAEGSVRDGLSLLDQAIA-HGAGEVTAEAVRDMLGLADRARVIDLFEAL 269 (598)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHh-hcCCCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345555555443 4566666665555553 335899999999988754 220 11222222444433
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPN 688 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~ 688 (757)
..|+.++|+.+++.+...|..|-
T Consensus 270 -~~gd~~~Al~~l~~l~~~G~~p~ 292 (598)
T PRK09111 270 -MRGDVAAALAEFRAQYDAGADPV 292 (598)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34788888888888887765553
No 484
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=23.07 E-value=9e+02 Score=25.50 Aligned_cols=95 Identities=17% Similarity=0.103 Sum_probs=54.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
..|+...|+..++.+.... +++.. -..+...+++.+- ......+-..+..+|+++.|
T Consensus 202 s~GD~R~aLN~LE~~~~~~-------~~~~~------------~~~~~l~~~l~~~----~~~~Dk~gD~hYdliSA~hK 258 (436)
T COG2256 202 SNGDARRALNLLELAALSA-------EPDEV------------LILELLEEILQRR----SARFDKDGDAHYDLISALHK 258 (436)
T ss_pred cCchHHHHHHHHHHHHHhc-------CCCcc------------cCHHHHHHHHhhh----hhccCCCcchHHHHHHHHHH
Confidence 3578888888877776543 22220 0022233333332 22233444555566777665
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 421 ---SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGR 458 (757)
Q Consensus 421 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (757)
-.+.+.|+-++-+|.+.|-.|-...-..++-++..-|.
T Consensus 259 SvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 259 SVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred hhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 46788888888889888876655555555555544443
No 485
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.01 E-value=9e+02 Score=29.65 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 477 NAVTYTILITAFCNVNNFQEAIKWF 501 (757)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~ 501 (757)
....|..|...+.+.|+.++|+..-
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhc
Confidence 3445555555555666666555443
No 486
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=23.00 E-value=8.9e+02 Score=26.65 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-----C----------CCCHHHHHHHHH
Q 048807 599 FSAARRVLKKMV-KEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSN-----V----------SPNTVIYNILID 662 (757)
Q Consensus 599 ~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~----------~p~~~~~~~li~ 662 (757)
.++....++... +.|+..+......++. ...|+...|...++++....+ + ..+......+++
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 445555555444 4566666666655554 346889999999888754111 1 012222233444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 663 SLCKNNQVELALSLMEEMKVKEVRP 687 (757)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~~~g~~p 687 (757)
+..+ |+.++|+.+++++...|..|
T Consensus 267 ai~~-~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 267 YIIH-RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 4433 67777777777777766543
No 487
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=22.61 E-value=9.3e+02 Score=29.55 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=46.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------
Q 048807 512 DSVVYFTLISGLCQAGRMNDASLVVSKL-------KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI------- 577 (757)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 577 (757)
....|..+...+.+.|+.++|+..-... ......-+...|..+.-.+...++...|...+.+....
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 3445566666666666666666543321 11111112233444444444444555555555544321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 578 GMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 578 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
..||...+++.+-..+...++++.|.++.+.+.+
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1123333334333334444566666666665554
No 488
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.47 E-value=1.3e+03 Score=27.25 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCh--hHHHHHHHHHHHCCCCCccchHHH-
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE---AASCNALLNALGREGDF--KRMNQLFTEMKENDIEPSVVTFGT- 334 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~- 334 (757)
-|..|+..|...|+.++|++++....+..-..| ...+-.++..+.+.+.- +-.+++-+........-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 478899999999999999999999887321011 23344466666666655 555655555554421111111211
Q ss_pred -----------HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH
Q 048807 335 -----------IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK 382 (757)
Q Consensus 335 -----------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 382 (757)
.+-.|++....+-++..++.++... -.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~------~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN------RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc------cccchHHHHHHHHHHHH
Confidence 2335667778888999999988765 35577778888888875
No 489
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.97 E-value=9.7e+02 Score=25.46 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=28.1
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048807 482 TILITAFCN---VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGL 523 (757)
Q Consensus 482 ~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 523 (757)
..++.++.+ .++.+.|+.++..|++.|..|....-..++.++
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334555444 478999999999999988777655544444443
No 490
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.90 E-value=4.5e+02 Score=23.06 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=14.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048807 449 LVDGMCRHGRINSAVEFFQEVTRKGLCAN 477 (757)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 477 (757)
++..+.+.++.-.|.++|+++.+.++..+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 34444444444555555555555444433
No 491
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=21.62 E-value=4.4e+02 Score=29.44 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSS-SNVSPNTVIYNILIDSLCKNNQVE------LALSLMEEMKVKEVRPNTNTYNAM 695 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 695 (757)
+|..+|...|++..+.++++..... .|-+.-...||..|+-..+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999987762 122223456888888888888753 3455555544 45577888777
Q ss_pred HHHHHH
Q 048807 696 FKGLRQ 701 (757)
Q Consensus 696 ~~~~~~ 701 (757)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655443
No 492
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=21.60 E-value=5.6e+02 Score=22.54 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 655 VIYNILIDSLCKNNQ-VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ 701 (757)
Q Consensus 655 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 701 (757)
..|.++..+.....- ---+..+|+-|.+.+.+.++.-|..++.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 346666666655444 33456666666666666677777777766544
No 493
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.55 E-value=5.2e+02 Score=23.39 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCCh
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRA 345 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 345 (757)
-..++..+...++.-.|.++++++.+.+...+..|....+..+.+.|-+
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3345555555556667777777777776555666655566666666543
No 494
>PLN03025 replication factor C subunit; Provisional
Probab=21.36 E-value=8.7e+02 Score=24.65 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCCCHHHHHHHHHHHHHc
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK------------EVRPNTNTYNAMFKGLRQK 702 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------g~~p~~~~~~~l~~~~~~~ 702 (757)
++....+..+.+..|+.-+......++.... |+...|+..++..... .-.+.......+++.+..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~- 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLK- 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHc-
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048807 703 NMLDKAFKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 703 g~~~~A~~~~~~~~~~g~~p~~~~~~ 728 (757)
+++++|...+.+++..|..|......
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il~~ 263 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDIITT 263 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHH
No 495
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.33 E-value=7.6e+02 Score=23.99 Aligned_cols=110 Identities=11% Similarity=0.022 Sum_probs=60.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 187 LIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLI 266 (757)
Q Consensus 187 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 266 (757)
-++-+.+.|++.+|..-|++++-. +..+.-.. +.+..+ -+ -++++ ....+....
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~--------------l~~L~lkE---kP~e~e-W~-eLdk~-------~tpLllNy~ 237 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIIC--------------LRNLQLKE---KPGEPE-WL-ELDKM-------ITPLLLNYC 237 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHH--------------HHHHHhcc---CCCChH-HH-HHHHh-------hhHHHHhHH
Confidence 355677889999999888887542 12221110 001100 00 01111 112333445
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
.++...|++-++++--.++++..+. ++.+|..-..+.+..=+..+|..=|...++.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 5556667777777777777766544 6666666555555555666666666666654
No 496
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.09 E-value=9.8e+02 Score=26.32 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHH------------HHHHHHHHHH
Q 048807 599 FSAARRVLKKMV-KEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTV------------IYNILIDSLC 665 (757)
Q Consensus 599 ~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------------~~~~li~~~~ 665 (757)
.++....+.+.. +.|+..+......++. ...|+...|...++++.. .+-.-+.. ....+++++
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~--~s~GdlR~aln~Lekl~~-~~~~It~~~V~~~l~~~~~~~if~Li~al- 252 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVAR--LADGAMRDAESLLERLLA-LGTPVTRKQVEEALGLPPQERLRGIAAAL- 252 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHCCCcHHHHHHHHHHH-
Confidence 455555555543 4577666666655553 345888888888888765 32111111 112233333
Q ss_pred hcCCHHHHHHHHHHHHhCCCC
Q 048807 666 KNNQVELALSLMEEMKVKEVR 686 (757)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~g~~ 686 (757)
..++.++|+.+++++...|..
T Consensus 253 ~~~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 253 AQGDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred HcCCHHHHHHHHHHHHHcCCC
Confidence 346677777777777766543
No 497
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.09 E-value=5.1e+02 Score=25.99 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------CCHHHH
Q 048807 674 LSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEA----------GQTEKL 743 (757)
Q Consensus 674 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----------g~~~~A 743 (757)
.++|+.+.+.++.|.-.++..+.-.+.+.=.+.+.+.+++.++ .|..-+..|+..|+.. |++.--
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~-----sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL-----SDPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh-----cChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHhhch
Q 048807 744 KKFVQGYA 751 (757)
Q Consensus 744 ~~~~~~~~ 751 (757)
.++++.+|
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
No 498
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=21.05 E-value=2e+02 Score=27.35 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=42.7
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
+..+.|+.+.|.+++.++...-+. ....|..+...--+.|+++.|.+-|++..+.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 345677888888888888776443 66778888888888888888888888888764
Done!