Query 048807
Match_columns 757
No_of_seqs 886 out of 4199
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 23:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.1E-41 1.1E-45 380.8 42.1 504 146-734 82-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.1E-40 3.9E-45 376.2 43.6 501 113-699 85-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.6E-28 2.6E-32 255.6 49.3 383 335-739 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5E-28 1.7E-32 257.0 47.7 381 267-703 7-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.1E-28 7.1E-33 264.2 25.7 185 551-736 29-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.8E-28 1.3E-32 262.1 25.0 185 516-701 29-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.5E-24 5E-29 239.4 40.5 445 259-724 6-482 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.6E-24 8.9E-29 237.4 37.3 438 293-750 5-475 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 7.8E-23 2.7E-27 221.5 41.3 373 348-744 11-445 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 6.2E-23 2.1E-27 222.3 40.1 329 256-625 23-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 7E-23 2.4E-27 227.4 40.4 437 259-718 25-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 2.9E-23 9.9E-28 230.5 35.9 427 294-750 25-488 (537)
13 2xm6_A Protein corresponding t 99.9 2E-18 6.7E-23 188.8 51.5 362 279-718 27-432 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 2E-19 6.8E-24 187.9 40.2 331 258-629 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 6.6E-18 2.2E-22 184.6 52.0 362 243-646 26-431 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 5.9E-19 2E-23 184.3 40.7 333 293-667 2-353 (359)
17 1xi4_A Clathrin heavy chain; a 99.9 5.9E-16 2E-20 176.1 63.6 532 125-745 997-1584(1630)
18 2ooe_A Cleavage stimulation fa 99.9 1.1E-17 3.7E-22 184.8 47.8 422 256-718 10-492 (530)
19 1xi4_A Clathrin heavy chain; a 99.8 5.2E-16 1.8E-20 176.6 56.3 421 257-749 983-1441(1630)
20 3hym_B Cell division cycle pro 99.8 1.7E-18 5.9E-23 178.6 33.8 200 293-506 21-221 (330)
21 3hym_B Cell division cycle pro 99.8 2.7E-18 9.1E-23 177.1 33.5 287 326-628 19-314 (330)
22 2ooe_A Cleavage stimulation fa 99.8 5.5E-17 1.9E-21 179.2 45.8 413 237-683 25-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 2.5E-18 8.4E-23 180.6 27.5 305 305-643 36-355 (368)
24 1fch_A Peroxisomal targeting s 99.8 4.2E-18 1.4E-22 178.8 25.6 305 269-608 35-355 (368)
25 4g1t_A Interferon-induced prot 99.8 9.9E-17 3.4E-21 174.6 34.9 391 145-613 48-460 (472)
26 4eqf_A PEX5-related protein; a 99.8 2.9E-18 1E-22 179.8 21.3 263 480-750 67-353 (365)
27 4eqf_A PEX5-related protein; a 99.8 5.9E-18 2E-22 177.5 22.5 275 328-643 64-352 (365)
28 4g1t_A Interferon-induced prot 99.8 1.4E-16 4.9E-21 173.3 34.3 386 256-684 48-460 (472)
29 1b89_A Protein (clathrin heavy 99.8 1E-17 3.6E-22 171.7 22.8 282 271-605 15-304 (449)
30 3cv0_A Peroxisome targeting si 99.8 8.7E-17 3E-21 165.5 26.9 265 182-504 22-312 (327)
31 3cv0_A Peroxisome targeting si 99.8 6.5E-17 2.2E-21 166.4 25.6 264 259-537 21-310 (327)
32 1b89_A Protein (clathrin heavy 99.8 6E-17 2.1E-21 166.1 22.1 282 341-676 15-304 (449)
33 3mkr_A Coatomer subunit epsilo 99.7 5.3E-16 1.8E-20 156.1 27.0 274 453-746 9-287 (291)
34 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.7E-20 152.5 27.4 251 337-612 7-264 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 6E-22 183.0 10.9 118 583-701 127-248 (1134)
36 3e4b_A ALGK; tetratricopeptide 99.7 2.6E-15 8.8E-20 161.4 24.4 347 265-646 9-386 (452)
37 3spa_A Mtrpol, DNA-directed RN 99.7 4.4E-17 1.5E-21 179.9 10.4 156 367-527 124-286 (1134)
38 3e4b_A ALGK; tetratricopeptide 99.7 5.8E-15 2E-19 158.7 25.5 378 187-646 9-420 (452)
39 3uq3_A Heat shock protein STI1 99.6 4.4E-14 1.5E-18 139.6 26.5 225 479-718 6-236 (258)
40 2pl2_A Hypothetical conserved 99.6 1.3E-14 4.5E-19 139.2 21.5 200 256-470 2-212 (217)
41 3u4t_A TPR repeat-containing p 99.6 5.2E-14 1.8E-18 140.5 26.1 245 260-520 4-262 (272)
42 3uq3_A Heat shock protein STI1 99.6 2.5E-14 8.6E-19 141.3 23.6 225 260-507 6-236 (258)
43 2pl2_A Hypothetical conserved 99.6 2.1E-14 7.2E-19 137.8 20.9 200 291-505 2-212 (217)
44 4e6h_A MRNA 3'-END-processing 99.6 1E-11 3.5E-16 137.7 44.6 431 275-718 48-570 (679)
45 2h6f_A Protein farnesyltransfe 99.6 6.8E-14 2.3E-18 145.5 24.7 250 258-524 96-364 (382)
46 2h6f_A Protein farnesyltransfe 99.6 1.3E-13 4.3E-18 143.5 25.5 248 182-489 98-364 (382)
47 4e6h_A MRNA 3'-END-processing 99.6 2E-11 6.8E-16 135.4 43.5 426 310-751 48-568 (679)
48 1ouv_A Conserved hypothetical 99.6 3E-12 1E-16 127.8 33.1 224 477-719 5-252 (273)
49 3u4t_A TPR repeat-containing p 99.6 4.9E-13 1.7E-17 133.3 27.2 246 331-588 5-260 (272)
50 2ho1_A Type 4 fimbrial biogene 99.6 5.3E-13 1.8E-17 131.4 26.2 202 259-472 37-238 (252)
51 2ho1_A Type 4 fimbrial biogene 99.6 1E-12 3.5E-17 129.4 28.0 202 294-508 37-239 (252)
52 1ouv_A Conserved hypothetical 99.6 5E-12 1.7E-16 126.1 33.4 27 410-436 8-34 (273)
53 2vq2_A PILW, putative fimbrial 99.6 5.7E-13 2E-17 128.4 25.6 204 258-472 7-211 (225)
54 2q7f_A YRRB protein; TPR, prot 99.6 1E-13 3.5E-18 135.6 20.2 211 257-482 21-231 (243)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.9E-14 3E-18 138.9 20.1 221 272-507 18-244 (275)
56 2q7f_A YRRB protein; TPR, prot 99.6 1.7E-13 6E-18 133.9 20.2 201 293-507 22-222 (243)
57 2vq2_A PILW, putative fimbrial 99.6 9.7E-13 3.3E-17 126.8 25.0 203 293-507 7-211 (225)
58 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.3E-13 4.4E-18 137.7 19.3 153 549-712 112-269 (275)
59 3sf4_A G-protein-signaling mod 99.5 4.8E-13 1.6E-17 142.0 21.8 303 406-740 7-363 (406)
60 4a1s_A PINS, partner of inscut 99.5 5.9E-13 2E-17 141.7 21.2 275 443-718 48-372 (411)
61 3sf4_A G-protein-signaling mod 99.5 9.7E-13 3.3E-17 139.6 22.7 248 256-505 6-294 (406)
62 4a1s_A PINS, partner of inscut 99.5 6.5E-13 2.2E-17 141.4 20.2 281 370-682 48-371 (411)
63 3ro2_A PINS homolog, G-protein 99.5 2E-12 6.7E-17 133.0 20.3 243 261-505 7-290 (338)
64 3ro2_A PINS homolog, G-protein 99.5 1.7E-12 6E-17 133.4 19.9 276 410-717 7-331 (338)
65 2ond_A Cleavage stimulation fa 99.5 3.4E-11 1.2E-15 122.4 28.7 219 276-507 33-270 (308)
66 3vtx_A MAMA; tetratricopeptide 99.5 7.9E-12 2.7E-16 116.3 21.6 167 258-437 4-170 (184)
67 2ond_A Cleavage stimulation fa 99.5 7.6E-11 2.6E-15 119.8 30.7 219 495-718 33-270 (308)
68 3ulq_A Response regulator aspa 99.5 6.6E-12 2.3E-16 132.2 23.3 231 484-717 109-367 (383)
69 3vtx_A MAMA; tetratricopeptide 99.4 1.5E-11 5E-16 114.4 22.9 171 547-724 4-174 (184)
70 3ulq_A Response regulator aspa 99.4 1.1E-11 3.9E-16 130.4 23.5 297 380-682 22-367 (383)
71 4abn_A Tetratricopeptide repea 99.4 9.7E-12 3.3E-16 134.4 22.7 193 547-747 101-315 (474)
72 4abn_A Tetratricopeptide repea 99.4 4.8E-12 1.6E-16 136.8 19.4 216 274-504 83-318 (474)
73 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-12 4.5E-17 132.9 13.1 250 256-506 24-306 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 5.9E-12 2E-16 128.0 15.0 175 367-541 24-223 (311)
75 3q15_A PSP28, response regulat 99.4 2E-10 6.8E-15 120.5 26.9 230 484-717 107-364 (378)
76 3q15_A PSP28, response regulat 99.3 1.8E-10 6E-15 120.9 24.9 312 366-682 6-364 (378)
77 1hz4_A MALT regulatory protein 99.3 9E-10 3.1E-14 115.3 29.4 277 262-540 17-320 (373)
78 1hz4_A MALT regulatory protein 99.3 1.2E-09 4.3E-14 114.2 29.9 273 413-717 19-321 (373)
79 3as5_A MAMA; tetratricopeptide 99.3 1.4E-10 4.7E-15 107.5 19.5 165 260-437 9-173 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.3 5.1E-11 1.7E-15 133.9 18.7 168 256-436 6-173 (723)
81 4i17_A Hypothetical protein; T 99.3 4.1E-10 1.4E-14 108.7 22.0 209 257-486 5-222 (228)
82 3as5_A MAMA; tetratricopeptide 99.3 3.6E-10 1.2E-14 104.6 19.4 164 295-471 9-172 (186)
83 4gyw_A UDP-N-acetylglucosamine 99.2 3.3E-10 1.1E-14 127.3 21.2 169 366-541 5-173 (723)
84 4i17_A Hypothetical protein; T 99.2 1.3E-09 4.4E-14 105.2 22.7 200 511-725 5-214 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 2.4E-10 8.1E-15 114.1 16.8 230 131-397 26-279 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 2.3E-10 8E-15 114.2 14.2 235 271-506 13-280 (283)
87 1qqe_A Vesicular transport pro 99.1 6.5E-09 2.2E-13 104.4 22.2 96 551-646 120-227 (292)
88 2uy1_A Cleavage stimulation fa 99.1 1.2E-07 4E-12 102.2 33.1 379 271-717 6-412 (493)
89 1qqe_A Vesicular transport pro 99.1 4.7E-09 1.6E-13 105.4 19.2 217 274-506 32-268 (292)
90 3mv2_B Coatomer subunit epsilo 99.0 5.6E-08 1.9E-12 95.6 24.6 179 497-682 85-281 (310)
91 3qky_A Outer membrane assembly 99.0 1E-08 3.5E-13 101.1 19.5 212 256-496 12-250 (261)
92 2uy1_A Cleavage stimulation fa 99.0 5.4E-07 1.9E-11 97.0 34.3 378 306-750 6-410 (493)
93 3urz_A Uncharacterized protein 99.0 7.8E-09 2.7E-13 97.9 17.7 162 261-436 6-185 (208)
94 3mv2_B Coatomer subunit epsilo 99.0 4.7E-08 1.6E-12 96.1 23.0 176 567-750 85-279 (310)
95 3qky_A Outer membrane assembly 99.0 1.8E-08 6E-13 99.4 20.4 206 511-742 13-250 (261)
96 2fo7_A Synthetic consensus TPR 99.0 1E-08 3.6E-13 88.9 16.2 128 261-397 3-130 (136)
97 3urz_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 96.7 17.3 137 589-732 60-198 (208)
98 3dra_A Protein farnesyltransfe 99.0 1.8E-07 6.3E-12 93.0 26.3 236 269-518 42-298 (306)
99 2fo7_A Synthetic consensus TPR 99.0 1.4E-08 4.7E-13 88.1 15.8 130 296-437 3-132 (136)
100 3dra_A Protein farnesyltransfe 99.0 3.4E-07 1.2E-11 91.1 27.3 221 162-436 47-286 (306)
101 3rjv_A Putative SEL1 repeat pr 99.0 7.8E-08 2.7E-12 91.2 21.5 173 532-719 5-198 (212)
102 2pzi_A Probable serine/threoni 99.0 4E-09 1.4E-13 119.2 14.4 153 270-436 402-562 (681)
103 3rjv_A Putative SEL1 repeat pr 99.0 5.7E-08 2E-12 92.2 20.2 61 258-322 17-81 (212)
104 4ga2_A E3 SUMO-protein ligase 98.9 1.7E-09 5.7E-14 96.5 7.9 144 266-422 4-148 (150)
105 2yhc_A BAMD, UPF0169 lipoprote 98.9 8.2E-08 2.8E-12 92.1 20.5 186 259-474 4-215 (225)
106 3qou_A Protein YBBN; thioredox 98.9 1.6E-08 5.5E-13 101.1 15.5 168 256-435 114-282 (287)
107 2pzi_A Probable serine/threoni 98.9 1.8E-08 6.1E-13 113.9 17.1 174 340-528 402-583 (681)
108 2ifu_A Gamma-SNAP; membrane fu 98.9 4.7E-08 1.6E-12 98.9 17.7 159 522-681 45-222 (307)
109 4ga2_A E3 SUMO-protein ligase 98.9 9.5E-09 3.2E-13 91.5 10.5 145 336-493 4-149 (150)
110 2r5s_A Uncharacterized protein 98.9 2.5E-08 8.6E-13 91.6 13.4 161 262-435 9-171 (176)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 5.5E-08 1.9E-12 98.4 17.0 207 272-505 4-222 (307)
112 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.9E-07 1.3E-11 87.3 22.1 186 547-755 3-215 (225)
113 2vsy_A XCC0866; transferase, g 98.8 3.9E-08 1.3E-12 109.1 17.1 153 273-438 3-158 (568)
114 2r5s_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 90.4 13.8 56 334-396 11-66 (176)
115 3qou_A Protein YBBN; thioredox 98.8 5.6E-08 1.9E-12 97.2 15.8 167 292-471 115-283 (287)
116 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.4E-12 104.9 19.0 154 342-508 2-158 (568)
117 4gco_A Protein STI-1; structur 98.7 1.7E-07 5.8E-12 80.3 14.0 111 259-378 13-123 (126)
118 3q7a_A Farnesyltransferase alp 98.7 2.9E-06 1E-10 85.1 24.5 224 269-506 64-330 (349)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.4E-07 2.2E-11 84.8 17.9 127 551-682 9-149 (213)
120 4f3v_A ESX-1 secretion system 98.7 3.3E-07 1.1E-11 88.9 15.1 187 271-472 18-237 (282)
121 3gyz_A Chaperone protein IPGC; 98.7 4.8E-07 1.6E-11 80.0 14.9 101 257-359 34-134 (151)
122 3q7a_A Farnesyltransferase alp 98.7 1.1E-05 3.6E-10 81.1 26.2 170 345-528 70-257 (349)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1E-06 3.6E-11 83.4 18.2 92 262-358 9-100 (213)
124 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.5E-11 86.8 20.3 167 550-717 77-265 (293)
125 2c2l_A CHIP, carboxy terminus 98.7 6.6E-08 2.3E-12 96.3 9.9 99 258-358 3-101 (281)
126 2qfc_A PLCR protein; TPR, HTH, 98.6 1.8E-06 6.2E-11 86.5 20.3 166 584-749 76-262 (293)
127 3u3w_A Transcriptional activat 98.6 8.5E-06 2.9E-10 81.5 25.1 165 553-717 80-265 (293)
128 3u3w_A Transcriptional activat 98.6 5.4E-06 1.9E-10 83.0 23.5 173 264-436 80-265 (293)
129 1a17_A Serine/threonine protei 98.6 7.1E-07 2.4E-11 80.5 15.5 130 259-397 13-144 (166)
130 2lni_A Stress-induced-phosphop 98.6 5.7E-07 1.9E-11 77.6 14.0 121 256-385 13-133 (133)
131 1na0_A Designed protein CTPR3; 98.6 9.1E-07 3.1E-11 75.1 15.0 116 259-383 9-124 (125)
132 4f3v_A ESX-1 secretion system 98.6 1.3E-06 4.4E-11 84.7 17.0 206 303-518 16-246 (282)
133 3gw4_A Uncharacterized protein 98.6 8.4E-07 2.9E-11 83.2 15.2 166 270-436 3-175 (203)
134 4gco_A Protein STI-1; structur 98.6 7.1E-07 2.4E-11 76.4 13.3 96 294-397 13-108 (126)
135 1a17_A Serine/threonine protei 98.6 1.2E-06 4E-11 79.0 15.2 130 294-435 13-144 (166)
136 2vyi_A SGTA protein; chaperone 98.6 9.3E-07 3.2E-11 75.8 13.8 120 258-386 11-130 (131)
137 2c2l_A CHIP, carboxy terminus 98.6 4.1E-07 1.4E-11 90.5 12.7 99 407-507 3-101 (281)
138 1na0_A Designed protein CTPR3; 98.5 1.3E-06 4.4E-11 74.2 14.0 96 294-397 9-104 (125)
139 3gyz_A Chaperone protein IPGC; 98.5 6.7E-07 2.3E-11 79.0 11.2 121 261-397 11-131 (151)
140 2vgx_A Chaperone SYCD; alterna 98.5 6.6E-07 2.3E-11 79.1 11.1 97 259-357 21-117 (148)
141 1p5q_A FKBP52, FK506-binding p 98.5 1.3E-06 4.6E-11 89.2 15.0 131 258-396 146-291 (336)
142 3dss_A Geranylgeranyl transfer 98.5 7.2E-05 2.5E-09 74.7 26.9 140 269-421 39-192 (331)
143 2lni_A Stress-induced-phosphop 98.5 1.4E-06 4.9E-11 74.9 12.9 118 293-422 15-132 (133)
144 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 81.6 13.7 62 656-717 109-175 (203)
145 1p5q_A FKBP52, FK506-binding p 98.5 1.4E-07 4.9E-12 96.5 6.8 149 273-435 127-292 (336)
146 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.9E-11 80.3 11.9 118 271-397 22-142 (177)
147 2vyi_A SGTA protein; chaperone 98.4 5.2E-06 1.8E-10 70.9 15.2 118 618-739 12-129 (131)
148 3upv_A Heat shock protein STI1 98.4 2.9E-06 9.9E-11 72.5 13.3 98 259-358 4-101 (126)
149 2vgx_A Chaperone SYCD; alterna 98.4 1.5E-06 5.1E-11 76.8 11.7 102 281-391 9-110 (148)
150 2xcb_A PCRH, regulatory protei 98.4 1.4E-06 4.7E-11 76.5 11.3 99 258-358 17-115 (142)
151 2fbn_A 70 kDa peptidylprolyl i 98.4 2.2E-07 7.7E-12 87.0 6.4 151 265-428 10-176 (198)
152 4gcn_A Protein STI-1; structur 98.4 3.2E-06 1.1E-10 72.4 13.2 98 260-358 9-112 (127)
153 3dss_A Geranylgeranyl transfer 98.4 0.00013 4.3E-09 73.0 26.5 166 340-519 40-233 (331)
154 1elw_A TPR1-domain of HOP; HOP 98.4 5.4E-06 1.8E-10 69.4 14.3 112 259-379 4-115 (118)
155 2e2e_A Formate-dependent nitri 98.4 1.8E-06 6E-11 79.0 11.6 122 305-438 21-145 (177)
156 4gcn_A Protein STI-1; structur 98.4 4.6E-06 1.6E-10 71.4 12.7 106 619-728 9-120 (127)
157 3q49_B STIP1 homology and U bo 98.3 5.1E-06 1.8E-10 72.0 12.8 102 256-359 6-107 (137)
158 2xcb_A PCRH, regulatory protei 98.3 1.4E-06 4.8E-11 76.4 8.9 97 293-397 17-113 (142)
159 3sz7_A HSC70 cochaperone (SGT) 98.3 5E-06 1.7E-10 74.9 12.6 101 257-359 9-109 (164)
160 3upv_A Heat shock protein STI1 98.3 5.5E-06 1.9E-10 70.7 12.1 96 294-397 4-99 (126)
161 1elw_A TPR1-domain of HOP; HOP 98.3 1.5E-05 5.3E-10 66.5 14.5 95 294-396 4-98 (118)
162 2fbn_A 70 kDa peptidylprolyl i 98.3 7.6E-06 2.6E-10 76.4 13.5 129 260-396 39-183 (198)
163 1elr_A TPR2A-domain of HOP; HO 98.3 5.4E-06 1.8E-10 70.9 11.1 113 259-380 4-122 (131)
164 2dba_A Smooth muscle cell asso 98.3 1.5E-05 5.3E-10 69.9 14.1 115 256-379 25-142 (148)
165 2kck_A TPR repeat; tetratricop 98.2 5.7E-06 2E-10 68.5 10.2 100 258-359 5-107 (112)
166 1hxi_A PEX5, peroxisome target 98.2 6.7E-06 2.3E-10 69.6 10.4 96 262-359 20-115 (121)
167 1elr_A TPR2A-domain of HOP; HO 98.2 1.1E-05 3.7E-10 69.0 11.9 111 619-733 5-121 (131)
168 3sz7_A HSC70 cochaperone (SGT) 98.2 2.3E-05 8E-10 70.4 14.4 96 549-646 12-107 (164)
169 2dba_A Smooth muscle cell asso 98.2 5.9E-05 2E-09 66.0 16.2 98 617-718 27-128 (148)
170 4b4t_Q 26S proteasome regulato 98.2 6.6E-05 2.3E-09 79.7 19.5 198 485-682 11-244 (434)
171 2kck_A TPR repeat; tetratricop 98.2 1.4E-05 4.7E-10 66.1 11.2 97 330-437 7-106 (112)
172 3q49_B STIP1 homology and U bo 98.2 1.6E-05 5.3E-10 68.9 12.0 98 292-397 7-104 (137)
173 2xev_A YBGF; tetratricopeptide 98.1 5.8E-05 2E-09 64.4 14.2 96 262-359 5-106 (129)
174 4b4t_Q 26S proteasome regulato 98.1 9.7E-05 3.3E-09 78.4 19.0 198 449-646 10-244 (434)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.7E-05 9.2E-10 83.2 14.3 131 258-396 267-412 (457)
176 3ro3_A PINS homolog, G-protein 98.1 2.3E-05 7.8E-10 69.8 11.3 133 585-717 11-157 (164)
177 1wao_1 Serine/threonine protei 98.0 8.8E-06 3E-10 87.4 9.3 121 265-394 12-134 (477)
178 3rkv_A Putative peptidylprolyl 98.0 2.2E-05 7.6E-10 70.4 10.6 100 259-359 11-127 (162)
179 1hxi_A PEX5, peroxisome target 98.0 2.9E-05 1E-09 65.6 10.7 96 331-437 19-114 (121)
180 3ro3_A PINS homolog, G-protein 98.0 4.7E-05 1.6E-09 67.7 12.8 140 296-436 11-157 (164)
181 1ihg_A Cyclophilin 40; ppiase 98.0 2.9E-05 1E-09 80.2 12.6 123 260-391 224-362 (370)
182 3k9i_A BH0479 protein; putativ 98.0 1.1E-05 3.7E-10 67.8 6.5 87 271-358 2-90 (117)
183 2xev_A YBGF; tetratricopeptide 98.0 0.00016 5.6E-09 61.5 14.1 91 299-397 7-103 (129)
184 2hr2_A Hypothetical protein; a 97.9 7.4E-05 2.5E-09 65.2 11.5 98 260-358 12-131 (159)
185 3rkv_A Putative peptidylprolyl 97.9 8.4E-05 2.9E-09 66.5 12.4 68 654-724 63-130 (162)
186 1wao_1 Serine/threonine protei 97.9 3E-05 1E-09 83.2 11.0 123 298-432 10-134 (477)
187 1dce_A Protein (RAB geranylger 97.9 0.00027 9.3E-09 77.2 18.6 175 270-458 39-241 (567)
188 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 9.3E-05 3.2E-09 79.0 14.1 142 273-428 248-405 (457)
189 1dce_A Protein (RAB geranylger 97.9 0.0004 1.4E-08 75.9 19.4 173 563-742 44-244 (567)
190 1ihg_A Cyclophilin 40; ppiase 97.9 7.5E-05 2.6E-09 77.1 12.5 139 294-463 223-361 (370)
191 2hr2_A Hypothetical protein; a 97.9 0.00014 4.6E-09 63.6 12.0 93 656-750 13-128 (159)
192 3k9i_A BH0479 protein; putativ 97.8 2.5E-05 8.4E-10 65.6 6.6 84 307-397 3-88 (117)
193 2l6j_A TPR repeat-containing p 97.8 2.4E-05 8.3E-10 64.6 6.4 96 653-751 3-105 (111)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 5.6E-05 1.9E-09 77.1 9.4 150 258-437 178-328 (338)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 5.7E-05 2E-09 77.0 8.2 134 236-396 191-325 (338)
196 3n71_A Histone lysine methyltr 97.7 0.00025 8.6E-09 75.5 12.8 134 338-471 318-463 (490)
197 3n71_A Histone lysine methyltr 97.7 0.00038 1.3E-08 74.1 14.0 128 379-506 318-463 (490)
198 1klx_A Cysteine rich protein B 97.7 0.0014 4.6E-08 56.6 14.9 87 449-541 31-125 (138)
199 2l6j_A TPR repeat-containing p 97.6 3.6E-05 1.2E-09 63.5 4.5 94 258-354 3-103 (111)
200 2kat_A Uncharacterized protein 97.6 0.0002 6.8E-09 59.6 9.0 79 277-357 3-81 (115)
201 1klx_A Cysteine rich protein B 97.6 0.0012 4.1E-08 57.0 14.2 48 561-611 74-125 (138)
202 1zu2_A Mitochondrial import re 97.6 0.00014 4.7E-09 63.4 7.2 99 270-378 13-132 (158)
203 1na3_A Designed protein CTPR2; 97.5 0.00047 1.6E-08 54.1 9.5 62 260-322 10-71 (91)
204 1na3_A Designed protein CTPR2; 97.5 0.00052 1.8E-08 53.9 9.6 66 293-359 8-73 (91)
205 1zu2_A Mitochondrial import re 97.5 0.00022 7.7E-09 62.0 7.4 97 632-733 16-133 (158)
206 2kat_A Uncharacterized protein 97.4 0.00047 1.6E-08 57.3 8.6 61 583-644 19-79 (115)
207 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.7E-08 53.5 8.9 66 256-322 4-69 (100)
208 3ma5_A Tetratricopeptide repea 97.3 0.0012 3.9E-08 53.3 9.1 64 653-717 6-69 (100)
209 3ly7_A Transcriptional activat 97.0 0.0066 2.3E-07 60.8 13.3 74 651-728 274-347 (372)
210 2kc7_A BFR218_protein; tetratr 96.8 0.0025 8.6E-08 50.9 6.6 83 265-357 6-89 (99)
211 3qww_A SET and MYND domain-con 96.8 0.0052 1.8E-07 64.2 10.4 96 341-436 310-410 (433)
212 3ly7_A Transcriptional activat 96.6 0.035 1.2E-06 55.6 14.8 66 405-472 274-339 (372)
213 3qwp_A SET and MYND domain-con 96.6 0.017 5.7E-07 60.5 13.0 101 336-436 294-399 (429)
214 3bee_A Putative YFRE protein; 96.5 0.03 1E-06 44.0 11.1 68 256-324 3-73 (93)
215 2kc7_A BFR218_protein; tetratr 96.5 0.011 3.9E-07 46.9 8.7 80 660-750 6-87 (99)
216 3qww_A SET and MYND domain-con 96.5 0.014 4.6E-07 61.0 11.1 89 383-471 311-410 (433)
217 3qwp_A SET and MYND domain-con 96.2 0.033 1.1E-06 58.2 12.6 93 379-471 296-399 (429)
218 3mkq_A Coatomer beta'-subunit; 96.2 0.17 5.7E-06 58.2 19.8 188 487-741 608-800 (814)
219 3mkq_A Coatomer beta'-subunit; 96.0 0.18 6.2E-06 57.9 18.6 190 451-707 607-801 (814)
220 3mkq_B Coatomer subunit alpha; 95.8 0.58 2E-05 41.2 16.5 128 268-434 14-141 (177)
221 1wy6_A Hypothetical protein ST 95.8 0.68 2.3E-05 38.2 15.9 139 560-721 19-157 (172)
222 3mkq_B Coatomer subunit alpha; 95.7 0.55 1.9E-05 41.4 15.7 100 594-715 16-115 (177)
223 3bee_A Putative YFRE protein; 95.6 0.099 3.4E-06 41.0 9.8 68 291-359 3-73 (93)
224 4ady_A RPN2, 26S proteasome re 95.5 4.6 0.00016 45.8 36.6 310 415-739 381-721 (963)
225 3u64_A Protein TP_0956; tetrat 95.5 1.4 4.9E-05 42.2 19.0 90 529-620 179-279 (301)
226 1pc2_A Mitochondria fission pr 95.4 0.17 5.7E-06 43.4 11.1 70 652-724 30-104 (152)
227 2v5f_A Prolyl 4-hydroxylase su 95.4 0.091 3.1E-06 42.2 9.3 67 257-323 3-75 (104)
228 1pc2_A Mitochondria fission pr 95.3 0.12 4.2E-06 44.3 10.2 79 277-357 16-99 (152)
229 2v5f_A Prolyl 4-hydroxylase su 95.3 0.16 5.4E-06 40.7 10.5 67 656-724 7-79 (104)
230 1wy6_A Hypothetical protein ST 95.3 0.94 3.2E-05 37.4 14.3 32 442-473 124-155 (172)
231 3lvg_A Clathrin heavy chain 1; 95.2 0.0001 3.5E-09 74.9 -10.8 249 258-534 53-325 (624)
232 4ady_A RPN2, 26S proteasome re 95.1 5.8 0.0002 44.9 36.9 269 453-736 384-673 (963)
233 3u64_A Protein TP_0956; tetrat 94.3 0.24 8.3E-06 47.5 10.3 83 634-721 179-272 (301)
234 4h7y_A Dual specificity protei 94.0 1 3.5E-05 38.1 12.1 104 328-442 12-128 (161)
235 3lvg_A Clathrin heavy chain 1; 93.8 0.0015 5.1E-08 66.6 -6.3 237 147-429 82-325 (624)
236 4h7y_A Dual specificity protei 92.8 0.83 2.8E-05 38.6 9.7 55 561-616 73-127 (161)
237 2wpv_A GET4, UPF0363 protein Y 92.0 9.7 0.00033 37.1 21.2 81 476-575 132-215 (312)
238 1nzn_A CGI-135 protein, fissio 91.4 0.81 2.8E-05 37.6 8.1 83 274-358 16-103 (126)
239 1nzn_A CGI-135 protein, fissio 91.2 1.1 3.8E-05 36.8 8.7 23 660-682 80-102 (126)
240 3ffl_A Anaphase-promoting comp 91.1 2.6 8.9E-05 36.4 11.2 120 624-756 26-154 (167)
241 4fhn_B Nucleoporin NUP120; pro 90.1 10 0.00035 45.0 19.4 129 445-575 901-1048(1139)
242 4gns_B Protein CSD3, chitin bi 89.7 2.6 8.9E-05 46.7 12.7 128 262-396 251-397 (754)
243 4fhn_B Nucleoporin NUP120; pro 88.0 8 0.00027 45.9 16.5 211 376-611 818-1049(1139)
244 4gns_B Protein CSD3, chitin bi 87.9 2.1 7.3E-05 47.4 10.5 51 699-751 347-398 (754)
245 1v54_E Cytochrome C oxidase po 87.8 3 0.0001 32.3 8.0 62 669-731 25-86 (109)
246 4b4t_P 26S proteasome regulato 87.5 29 0.00099 36.0 21.8 95 587-681 141-245 (445)
247 1y8m_A FIS1; mitochondria, unk 86.8 12 0.0004 31.4 11.8 72 651-724 36-110 (144)
248 3lpz_A GET4 (YOR164C homolog); 86.6 26 0.00087 34.4 23.5 81 476-575 134-214 (336)
249 2wpv_A GET4, UPF0363 protein Y 86.1 26 0.0009 34.0 21.9 80 617-716 133-215 (312)
250 2ff4_A Probable regulatory pro 85.6 2.2 7.6E-05 43.6 8.6 70 261-331 173-247 (388)
251 3o48_A Mitochondria fission 1 85.0 7.7 0.00026 32.1 9.7 71 652-724 38-111 (134)
252 2y69_E Cytochrome C oxidase su 84.5 13 0.00045 30.6 10.6 62 670-732 69-130 (152)
253 2ff4_A Probable regulatory pro 84.4 3.8 0.00013 41.8 9.8 69 551-620 174-247 (388)
254 3txn_A 26S proteasome regulato 84.3 38 0.0013 34.3 21.5 167 443-610 19-208 (394)
255 3ffl_A Anaphase-promoting comp 83.2 9.7 0.00033 32.9 10.1 126 578-716 13-149 (167)
256 1v54_E Cytochrome C oxidase po 79.9 8.1 0.00028 30.0 7.4 51 598-648 25-75 (109)
257 1y8m_A FIS1; mitochondria, unk 79.0 27 0.00094 29.2 12.4 87 241-329 20-110 (144)
258 3o48_A Mitochondria fission 1 78.7 23 0.00077 29.3 10.3 70 254-323 35-107 (134)
259 4b4t_P 26S proteasome regulato 77.2 71 0.0024 33.0 23.2 177 255-435 52-245 (445)
260 1zbp_A Hypothetical protein VP 74.2 59 0.002 30.6 14.9 55 268-323 6-60 (273)
261 2p58_C Putative type III secre 73.2 14 0.00046 28.6 6.9 49 662-716 48-96 (116)
262 1zbp_A Hypothetical protein VP 72.4 17 0.00059 34.2 9.1 53 558-611 7-59 (273)
263 2y69_E Cytochrome C oxidase su 71.4 16 0.00054 30.1 7.4 50 598-647 68-117 (152)
264 3ltm_A Alpha-REP4; protein eng 71.4 57 0.0019 29.2 19.0 170 547-737 32-201 (211)
265 3lpz_A GET4 (YOR164C homolog); 71.3 80 0.0027 30.9 26.7 167 480-681 37-214 (336)
266 1qsa_A Protein (soluble lytic 70.8 1.2E+02 0.0042 32.8 36.3 335 334-713 77-437 (618)
267 4b4t_R RPN7, 26S proteasome re 70.0 37 0.0013 35.0 12.3 64 372-436 133-196 (429)
268 3esl_A Checkpoint serine/threo 68.9 33 0.0011 30.7 9.7 54 669-722 94-148 (202)
269 4b4t_R RPN7, 26S proteasome re 68.3 41 0.0014 34.6 12.2 102 331-436 133-236 (429)
270 2uwj_G Type III export protein 67.6 13 0.00045 28.6 5.8 76 633-717 21-96 (115)
271 3txn_A 26S proteasome regulato 63.0 1.3E+02 0.0045 30.3 24.9 167 371-539 20-207 (394)
272 1qsa_A Protein (soluble lytic 62.2 1.8E+02 0.006 31.5 32.7 200 384-607 228-437 (618)
273 2uwj_G Type III export protein 58.6 61 0.0021 25.0 8.0 6 343-348 53-58 (115)
274 3ltm_A Alpha-REP4; protein eng 58.4 1E+02 0.0034 27.5 19.2 122 547-682 63-184 (211)
275 2p58_C Putative type III secre 57.8 64 0.0022 25.0 9.2 9 342-350 53-61 (116)
276 4a1g_A Mitotic checkpoint seri 56.1 76 0.0026 26.9 9.3 54 671-724 82-136 (152)
277 3ltj_A Alpharep-4; protein eng 53.9 1.2E+02 0.004 26.8 20.0 138 582-736 58-195 (201)
278 3esl_A Checkpoint serine/threo 51.9 1.3E+02 0.0045 26.8 10.8 53 529-581 95-148 (202)
279 2wvi_A Mitotic checkpoint seri 50.2 1.1E+02 0.0036 26.4 9.4 53 672-724 78-131 (164)
280 2d2s_A Exocyst complex compone 43.0 1.5E+02 0.005 27.3 10.0 91 376-470 24-118 (235)
281 4gq2_M Nucleoporin NUP120; bet 39.0 2.5E+02 0.0086 32.3 13.3 48 445-492 899-950 (950)
282 3eiq_C Programmed cell death p 38.4 3E+02 0.01 27.1 12.2 67 621-689 220-288 (358)
283 3kae_A CDC27, possible protein 37.1 2E+02 0.007 24.8 8.8 47 594-646 44-90 (242)
284 1k1a_A B-cell lymphoma 3-encod 36.0 1.4E+02 0.0048 26.9 9.1 190 264-477 11-210 (241)
285 4aez_C MAD3, mitotic spindle c 35.6 1E+02 0.0035 28.0 7.3 54 671-724 131-185 (223)
286 3mv2_A Coatomer subunit alpha; 34.3 3.3E+02 0.011 26.3 11.5 49 670-718 186-236 (325)
287 4gq2_M Nucleoporin NUP120; bet 32.9 3.6E+02 0.012 31.0 13.3 131 376-527 816-950 (950)
288 1wdy_A 2-5A-dependent ribonucl 32.4 95 0.0032 29.0 7.4 95 246-350 20-123 (285)
289 2nsz_A Programmed cell death p 31.4 2.1E+02 0.0072 23.3 8.8 64 373-440 10-75 (129)
290 2qx5_A Nucleoporin NIC96; mRNA 31.4 5.4E+02 0.018 27.9 21.6 43 374-420 156-198 (661)
291 2zu6_B Programmed cell death p 31.1 1.4E+02 0.0048 28.8 8.1 25 481-505 6-30 (307)
292 3ltj_A Alpharep-4; protein eng 29.9 2.8E+02 0.0095 24.1 20.1 122 547-682 58-179 (201)
293 4b4t_S RPN3, 26S proteasome re 29.8 5E+02 0.017 27.1 14.6 64 147-210 230-299 (523)
294 2zu6_B Programmed cell death p 29.4 72 0.0025 30.9 5.7 25 262-286 6-30 (307)
295 2ion_A PDCD4, programmed cell 28.4 1.8E+02 0.0063 24.5 7.5 65 372-440 11-77 (152)
296 3eu9_A Huntingtin-interacting 28.3 78 0.0027 28.7 5.8 17 265-281 45-61 (240)
297 2d2s_A Exocyst complex compone 28.1 3.3E+02 0.011 25.0 9.7 23 414-436 24-46 (235)
298 4a1g_A Mitotic checkpoint seri 28.0 2.7E+02 0.0094 23.5 10.0 50 532-581 84-134 (152)
299 3eiq_C Programmed cell death p 27.9 4.5E+02 0.015 25.9 13.1 67 657-724 220-288 (358)
300 2r9g_A AAA ATPase, central reg 27.8 3.2E+02 0.011 24.2 10.1 35 527-562 28-62 (204)
301 2cos_A Serine/threonine protei 27.3 51 0.0017 22.0 2.8 37 711-752 12-50 (54)
302 1q02_A Sequestosome 1; helical 27.1 1.1E+02 0.0038 20.2 4.3 40 242-283 9-48 (52)
303 4fke_A Aminopeptidase N; zinc 26.3 7.6E+02 0.026 28.1 15.8 88 264-356 691-785 (909)
304 4b4t_S RPN3, 26S proteasome re 26.2 3.9E+02 0.013 27.9 10.7 62 294-358 231-299 (523)
305 2nsz_A Programmed cell death p 25.2 2.8E+02 0.0094 22.6 7.9 64 621-686 10-75 (129)
306 2b7e_A PRE-mRNA processing pro 25.1 76 0.0026 21.8 3.5 32 310-341 2-34 (59)
307 1wdy_A 2-5A-dependent ribonucl 24.7 1.8E+02 0.0061 27.0 7.8 12 533-544 199-210 (285)
308 3bge_A Predicted ATPase; struc 24.4 3.7E+02 0.013 23.8 8.6 17 492-508 21-37 (201)
309 3hra_A Ankyrin repeat family p 24.0 1.2E+02 0.0042 26.4 6.1 15 269-283 12-26 (201)
310 3eu9_A Huntingtin-interacting 23.3 96 0.0033 28.0 5.3 6 490-495 186-191 (240)
311 1oyz_A Hypothetical protein YI 23.3 4.5E+02 0.015 24.3 23.4 235 475-736 34-279 (280)
312 4aez_C MAD3, mitotic spindle c 23.0 2.7E+02 0.0092 25.3 7.8 52 530-581 131-183 (223)
313 2wvi_A Mitotic checkpoint seri 22.6 3.6E+02 0.012 23.0 10.3 50 532-581 79-129 (164)
314 1bpo_A Protein (clathrin); cla 20.8 7E+02 0.024 25.6 11.1 95 251-347 353-447 (494)
315 2ion_A PDCD4, programmed cell 20.3 2.4E+02 0.0081 23.8 6.6 24 622-645 13-36 (152)
316 2xig_A Ferric uptake regulatio 20.2 3.2E+02 0.011 22.8 7.5 59 285-344 18-76 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-41 Score=380.85 Aligned_cols=504 Identities=11% Similarity=0.020 Sum_probs=291.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHH
Q 048807 146 LSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVF 225 (757)
Q Consensus 146 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~ 225 (757)
++...++.+++.|.+.|++++|+.+|+++....|+..+++.++.+|.+.|++++|+.+|+++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------- 145 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---------------- 145 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG----------------
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc----------------
Confidence 3455566666666666666666666666554444555566666666666666666666655421
Q ss_pred HHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 226 YALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALG 305 (757)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 305 (757)
.+++..+++.++.+|.++|++++|+++|+++... +.. ..++.
T Consensus 146 -----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~ 187 (597)
T 2xpi_A 146 -----------------------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF----RKD-----EKNAN 187 (597)
T ss_dssp -----------------------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT----C------------
T ss_pred -----------------------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc----ccc-----ccccc
Confidence 1234556666666666666666666666642211 100 00000
Q ss_pred HcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC
Q 048807 306 REGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK 385 (757)
Q Consensus 306 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 385 (757)
+.++ ...+.+++..+|+.++.+|.+.|++++|++.|+++++.+ +.+...+..++..+...+.
T Consensus 188 ~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~ 249 (597)
T 2xpi_A 188 KLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-------AKCYEAFDQLVSNHLLTAD 249 (597)
T ss_dssp ---C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCSCHH
T ss_pred cccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------chhhHHHHHHHHhhcccch
Confidence 0000 001222344555555555555555555555555555432 2233444444433332222
Q ss_pred HHHHHH--H-HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 048807 386 QEEALG--L-IEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 386 ~~~A~~--~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 462 (757)
.+.+.. + +..+. ..+......+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|
T Consensus 250 ~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 250 EEWDLVLKLNYSTYS---KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp HHHHHHHHSCTHHHH---GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHhcCCcccc---cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHH
Confidence 111111 0 22221 1222223344455555555556666666666555543 34555666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048807 463 VEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA 542 (757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 542 (757)
.++|+++.+.+.. +..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.
T Consensus 325 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666554332 44555666666666666666666666665432 445556666666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 543 GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYG 622 (757)
Q Consensus 543 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 622 (757)
. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+
T Consensus 403 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 403 D-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 2 2245666777777777777777777777766654 4466677777777777777777777777777643 33567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSS---SNVSPN--TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFK 697 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 697 (757)
.++..|.+.|++++|.++|+++.+. .+..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 7777777777777777777777652 144566 6678888888888888888888888877653 346778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 048807 698 GLRQKNMLDKAFKLMDRMIEHACHPD-YISMEILTEWL 734 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 734 (757)
+|.+.|++++|.++++++++. .|+ ...+..+...|
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 888888888888888888764 453 45555555443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-40 Score=376.21 Aligned_cols=501 Identities=12% Similarity=0.043 Sum_probs=374.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHH
Q 048807 113 YAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLL 192 (757)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (757)
..+..++..+ ...+.+++|+.+|+.+... .|+..++..++.+|.+.|++++|+.+|+++....+++.+++.++.+|.
T Consensus 85 ~~~~~~~~~~-~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 85 DYLRLWRHDA-LMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 4455555544 4478899999999999853 457789999999999999999999999998766678899999999999
Q ss_pred hcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048807 193 RCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRK 272 (757)
Q Consensus 193 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 272 (757)
++|++++|+++|+++.. +.. .+ ..+.+.
T Consensus 162 ~~g~~~~A~~~~~~~~~-------~~~----------------------~~-----------------------~~~~~~ 189 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNP-------FRK----------------------DE-----------------------KNANKL 189 (597)
T ss_dssp HTTCHHHHHHHHCSSCT-------TC------------------------------------------------------
T ss_pred HHhhHHHHHHHHhccCC-------ccc----------------------cc-----------------------cccccc
Confidence 99999999999985321 110 00 000011
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHH--H
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEAL--E 350 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~--~ 350 (757)
++ ...+.+.++.+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..+...+...+..+.+. .
T Consensus 190 ~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (597)
T 2xpi_A 190 LM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLK 257 (597)
T ss_dssp -C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHh
Confidence 11 112233456667777777777777777777777776653 223333444433332222211111 1
Q ss_pred H-HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 351 V-FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLE 429 (757)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (757)
+ +..+...+ ......+|+.++..|.+.|++++|.++|+++. .. +++..+|+.++.+|.+.|++++|++
T Consensus 258 l~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 258 LNYSTYSKED------AAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN---GL--EKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp SCTHHHHGGG------HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST---TG--GGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCcccccch------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh---cC--CchHHHHHHHHHHHHHhcCHHHHHH
Confidence 1 33343333 34455667777888888888888888888874 11 5788888888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048807 430 LFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGC 509 (757)
Q Consensus 430 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 509 (757)
+|+++.+.+.. +..++..++.++.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 327 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 403 (597)
T 2xpi_A 327 ITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD- 403 (597)
T ss_dssp HHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 88888876533 67788888888888888888888888888654 3377888888888888888888888888888754
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 510 SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTL 589 (757)
Q Consensus 510 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 589 (757)
+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 481 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNEL 481 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4567788888889999999999999998888764 3477888899999999999999999999998775 5678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKE----GLVPT--VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDS 663 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 663 (757)
+..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+. + +.+..+|..++.+
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-S-TNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-SCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCChHHHHHHHHH
Confidence 99999999999999999998875 55677 788999999999999999999999998872 2 4578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 664 LCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGL 699 (757)
Q Consensus 664 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 699 (757)
|.+.|++++|.+.|+++.+.. +.+...+..+..+|
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 999999999999999998852 33556666666554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.6e-28 Score=255.57 Aligned_cols=383 Identities=13% Similarity=0.066 Sum_probs=317.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
+...+.+.|++++|++.++++.+.. |.+...+..+...+.+.|++++|...++... ...+.+..+|..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~----~~~p~~~~~~~~l 73 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI----KQNPLLAEAYSNL 73 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCchHHHHHH
Confidence 3456778889999999998888764 5567778888888888999999999888874 3346678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
+..|.+.|++++|++.|+++.+.. +.+..+|..++.++.+.|++++|.+.|+++.+..+. +...+..+...+...|++
T Consensus 74 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCH
Confidence 999999999999999999988763 225667888999999999999999999998887543 556777888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+. .+...+..+...+...|++++|...|++.
T Consensus 152 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 229 (388)
T 1w3b_A 152 EEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988764 55678888999999999999999999999888743 35778888999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
.+.. +.+..++..++..|.+.|++++|...|+++++.. +.+..++..++.++.+.|++++|...++++.+. .+.+.
T Consensus 230 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 305 (388)
T 1w3b_A 230 LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHA 305 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCH
T ss_pred HhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccH
Confidence 8875 5567888999999999999999999999999864 235778889999999999999999999999882 45677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD-YISMEILTEW 733 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 733 (757)
.++..++..+.+.|++++|...++++.+.. +.+..++..++.++.+.|++++|.+.++++++ +.|+ ...|..+...
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHH
Confidence 889999999999999999999999998752 44677899999999999999999999999986 4564 4777788777
Q ss_pred HHhcCC
Q 048807 734 LSEAGQ 739 (757)
Q Consensus 734 ~~~~g~ 739 (757)
+...|+
T Consensus 383 ~~~~~~ 388 (388)
T 1w3b_A 383 LKEMQD 388 (388)
T ss_dssp HHHTCC
T ss_pred HHHccC
Confidence 766653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5e-28 Score=256.96 Aligned_cols=381 Identities=14% Similarity=0.105 Sum_probs=214.2
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChh
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRAD 346 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 346 (757)
..+.+.|++++|++.+..+.+..+. +...+..+...+.+.|++++|...++..++.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3444555555555555555554332 44444555555555555555555555554432 334444555555555555555
Q ss_pred HHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 347 EALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEK 426 (757)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (757)
+|++.|+++++.. +.+..+|..++..+.+.|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------------ 127 (388)
T 1w3b_A 85 EAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSA------------------------------ 127 (388)
T ss_dssp HHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------------
Confidence 5555555554432 233344555555555555555555555544
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 427 GLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
.+... .+...+..+...+...|++++|.+.|+++.+..+. +..+|..+...|.+.|++++|...|+++.+
T Consensus 128 --------l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 128 --------LQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp --------HHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --------HHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43321 12333444444444445555555555554443221 344555555555555555555555555555
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 507 AGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTY 586 (757)
Q Consensus 507 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 586 (757)
.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..++..|.+.|++++|.+.|+++.+.+ +.+..+|
T Consensus 198 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T 1w3b_A 198 LD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 43 3344555556666666666666666666655542 1245566666666666777777777776666654 4455666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 666 (757)
..++..+.+.|++++|...|+++++.. +.+..++..+...+...|++++|...++++.+ ..+.+..++..++..|.+
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHH
Confidence 667777777777777777777776642 34566677777777777777777777777665 223345667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 667 NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
.|++++|...|+++.+.. +.+...|..+...+...|
T Consensus 352 ~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 777777777777776631 224556666666666554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.1e-28 Score=264.16 Aligned_cols=185 Identities=18% Similarity=0.294 Sum_probs=108.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN---------FSAARRVLKKMVKEGLVPTVVTY 621 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~p~~~~~ 621 (757)
++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 45556666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 622 GALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ 701 (757)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 701 (757)
++||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 6666666666666666666666655 556666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 702 KNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 702 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
.|++++|.+++++|.+.|..|+..||..++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666655666666666665555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.8e-28 Score=262.09 Aligned_cols=185 Identities=15% Similarity=0.259 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 516 YFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK---------MLDKAYEVLQEMEDIGMTPNSVTY 586 (757)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~~~~~~~~~~~~~~ 586 (757)
++.+|++|++.|++++|.++|++|.+.|+.||..+||.+|.+|++.+ .+++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444444444444444444444444444444444444444444332 245666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 666 (757)
++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhh
Confidence 666666666666666666666666666666666666666666666666666666666666 5666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 667 NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ 701 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 701 (757)
.|++++|.++|++|.+.|..|+..||+.++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-24 Score=239.45 Aligned_cols=445 Identities=11% Similarity=0.001 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...|.+.|++++|+..|+++.+.+ |+..+|..++.+|.+.|++++|.+.|+++++.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456778889999999999999999999876 589999999999999999999999999999875 4456788999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+.+.|++++|+..|+++.+.+ +++......++..+.+......+.+.+..+. ..+..|+...+.......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-------DFNDASIEPMLERNLNKQAMSKLKEKFGDID---TATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-------SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-------CCccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhccCChhhHHH
Confidence 999999999999999999875 4455555555555555444444444443321 111111111111111101
Q ss_pred HHcCCHHHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----CC--C-----
Q 048807 419 CKSGNIEKGLELFHLMKQEGV---------TPNVVTLNTLVDGMCR---HGRINSAVEFFQEVTR-----KG--L----- 474 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~--~----- 474 (757)
...........+...+..... +.+...+......+.. .|++++|...++++.+ .. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 111111111111111111111 1124445555555554 7899999999999887 31 1
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048807 475 -CANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNH 553 (757)
Q Consensus 475 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 553 (757)
+.+..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+... .+...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHH
Confidence 1235677888899999999999999999998875 3388888999999999999999999999988743 36778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (757)
+...|...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999875 5567888899999999999999999999998753 3356788889999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 634 VDEAMKIFKELSSSSNVSPN----TVIYNILIDSLCK---NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLD 706 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 706 (757)
+++|...++++.+.....++ ...+..++..+.+ .|++++|...|+++.+.. +.+..++..++.++.+.|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 99999999988763222222 3478899999999 999999999999998753 446778899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 048807 707 KAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 707 ~A~~~~~~~~~~g~~p~~ 724 (757)
+|.+.++++++. .|+.
T Consensus 467 ~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 467 EAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHh--cccc
Confidence 999999999974 5665
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.6e-24 Score=237.44 Aligned_cols=438 Identities=11% Similarity=0.008 Sum_probs=330.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
....|......+.+.|++++|.+.|+++++.+ |+..+|..+..++.+.|++++|++.++++++.+ +.+..+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 75 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHH
Confidence 35677888899999999999999999999975 688899999999999999999999999999875 667889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
|..++.+|.+.|++++|...|+++. . ..+++......++..+........+.+.+..+...+..|+..........
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLS---L-NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---H-SSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH---h-cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH
Confidence 9999999999999999999999985 2 23455555666666665555555555555444333222222211111111
Q ss_pred HHHcCChHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cC-C-----
Q 048807 453 MCRHGRINSAVEFFQEVTRKGL---------CANAVTYTILITAFCN---VNNFQEAIKWFDDMSR-----AG-C----- 509 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~-~----- 509 (757)
............+...+..... +.+...+..+...+.. .|++++|...|+++.+ .. .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 231 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc
Confidence 1111111111111111111111 1225555555555554 8999999999999987 31 1
Q ss_pred --CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 510 --SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYN 587 (757)
Q Consensus 510 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 587 (757)
+.+..++..+...+...|++++|...++++.+... +...+..++..|...|++++|...++++.+.. +.+...+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 308 (514)
T 2gw1_A 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYY 308 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHH
T ss_pred cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHH
Confidence 22456788899999999999999999999998753 38889999999999999999999999999875 55778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc
Q 048807 588 TLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN 667 (757)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 667 (757)
.+...|...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+. .+.+...+..++..|.+.
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHC
Confidence 99999999999999999999999864 336778889999999999999999999999873 234567899999999999
Q ss_pred CCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048807 668 NQVELALSLMEEMKVKEV-RPN----TNTYNAMFKGLRQ---KNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQ 739 (757)
Q Consensus 668 g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 739 (757)
|++++|...++++.+... .++ ...|..++.++.. .|++++|.+.++++++. .+.+..++..++..+...|+
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcC
Confidence 999999999999986321 111 3488999999999 99999999999999975 23356888999999999999
Q ss_pred HHHHHHHHhhc
Q 048807 740 TEKLKKFVQGY 750 (757)
Q Consensus 740 ~~~A~~~~~~~ 750 (757)
.++|.+.+++.
T Consensus 465 ~~~A~~~~~~a 475 (514)
T 2gw1_A 465 IDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=7.8e-23 Score=221.53 Aligned_cols=373 Identities=13% Similarity=0.110 Sum_probs=294.3
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKG 427 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 427 (757)
+...+..++..+ +.+...+..++..|.+.|++++|..+|+++.. ..+.+..+|..++.+|...|++++|
T Consensus 11 ~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~g~~~~A 79 (450)
T 2y4t_A 11 VDLGTENLYFQS-------MADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKSKAA 79 (450)
T ss_dssp -------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccccccccc-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHCCCHHHH
Confidence 344455555443 66788999999999999999999999999852 2466899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHhcC
Q 048807 428 LELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA---VTYTIL------------ITAFCNVN 492 (757)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g 492 (757)
++.|+++.+.+. .+..++..++..|.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|
T Consensus 80 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 80 LPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999998753 36889999999999999999999999999987432 33 555555 44588999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 493 NFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQ 572 (757)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (757)
++++|+..|+++.+.. +.+..++..++..|.+.|++++|...|+++.+.. +.+..++..++.+|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998874 5678899999999999999999999999998764 3478899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHH
Q 048807 573 EMEDIGMTPNSVTYNTL------------ISFLSKSGNFSAARRVLKKMVKEGLVPT-----VVTYGALIHAFCVNGHVD 635 (757)
Q Consensus 573 ~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~ 635 (757)
++.+.. +.+...+..+ +..|.+.|++++|...|+++++. .|+ ...+..+..++.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 999874 4455555555 78899999999999999999985 344 457888899999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH------------HHHc
Q 048807 636 EAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP-NTNTYNAMFKG------------LRQK 702 (757)
Q Consensus 636 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~------------~~~~ 702 (757)
+|+..++++.+. .+.+...|..++.+|.+.|++++|...|+++.+. .| +...+..+..+ |...
T Consensus 313 ~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 313 EAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 999999998872 2346789999999999999999999999999984 45 45666666633 3333
Q ss_pred C-----CHHHHHHHHHHH-HHcCCCCCH-----------HHHHHHHHHHHhcCCHHHHH
Q 048807 703 N-----MLDKAFKLMDRM-IEHACHPDY-----------ISMEILTEWLSEAGQTEKLK 744 (757)
Q Consensus 703 g-----~~~~A~~~~~~~-~~~g~~p~~-----------~~~~~l~~~~~~~g~~~~A~ 744 (757)
| +.+++.+.|+++ ++ ..||. ..+..+..+|...|+.+++.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4 567778888874 43 23432 25666666777666655443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6.2e-23 Score=222.33 Aligned_cols=329 Identities=11% Similarity=0.050 Sum_probs=213.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+.+...+..++..|.+.|++++|+.+|+++.+..+. +..+|..++.+|.+.|++++|.+.|+++++.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 445566666666777777777777777766665433 56666666666667777777777776666654 3345566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDV---IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 412 (757)
+..|.+.|++++|.+.|+++++.. +.+. .++..++..+.. ..+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~--------------------------~~~~ 147 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-------PSENEEKEAQSQLIKSDEM--------------------------QRLR 147 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHH--------------------------HHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-------CCChhhHHHHHHHHHHHHH--------------------------HHHH
Confidence 666666666666666666666543 2333 444444444211 0122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVN 492 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 492 (757)
.+...+.+.|++++|++.|+++.+.. +.+..++..++..|.+.|++++|.+.|+++.+... .+..+|..++..|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 23445667788888888888777653 23667777778888888888888888887776533 36777777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 048807 493 NFQEAIKWFDDMSRAGCSADSVVYFTL------------ISGLCQAGRMNDASLVVSKLKEAGFRPD----IVCYNHLIS 556 (757)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~ 556 (757)
++++|+..|+++.+.. +.+...+..+ +..+.+.|++++|...|+++.+.... + ...+..++.
T Consensus 226 ~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHH
Confidence 8888888888777653 3344444433 66677777777777777777665321 2 335667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 557 GFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625 (757)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (757)
++.+.|++++|...++++.+.. +.+..+|..++.+|...|++++|...++++++.. +-+...+..+.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 7777777777777777776653 4466777777777777777777777777777642 11344444444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=7e-23 Score=227.36 Aligned_cols=437 Identities=12% Similarity=0.073 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...+.+.|++++|++.|+++.+.++. +..+|..++.+|.+.|++++|.+.|+++++.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456788899999999999999999999998755 88999999999999999999999999999875 4567888999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+...|++++|+..|+ .+.. .|+ .....+..+...+...+|...++++.... .+..+........+..+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--------~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 170 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--------NGD--FDGASIEPMLERNLNKQAMKVLNENLSKD-EGRGSQVLPSNTSLASF 170 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--------CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhC-ccccccccchHhHHHHH
Confidence 999999999999996 4432 222 22233455666677788999998873110 00111111223344556
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH--------HcCChHHHHHHHHHHHHCCCCCC-------HHHHH
Q 048807 419 CKSGNIEKGLELFHLMKQEGVTPNVV-TLNTLVDGMC--------RHGRINSAVEFFQEVTRKGLCAN-------AVTYT 482 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 482 (757)
....+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.... + ..++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALC 247 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHH
Confidence 6677777666555443322 22211 2222322222 235788999999998876433 3 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048807 483 ILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK 562 (757)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 562 (757)
.+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+... .+..++..+...|...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcC
Confidence 77788889999999999999998874 5578888899999999999999999999888743 36788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 563 MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFK 642 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 642 (757)
++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 325 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998875 5567888999999999999999999999998864 3356788889999999999999999999
Q ss_pred HhhhcC----CCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 643 ELSSSS----NVSPNTVIYNILIDSLCKN----------NQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 643 ~~~~~~----~~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
++.+.. ........+..+...+.+. |++++|...|+++.+.. +.+...+..++.++.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 876621 1111223355566778887 99999999999998752 44678899999999999999999
Q ss_pred HHHHHHHHHc
Q 048807 709 FKLMDRMIEH 718 (757)
Q Consensus 709 ~~~~~~~~~~ 718 (757)
.+.++++++.
T Consensus 482 ~~~~~~al~~ 491 (537)
T 3fp2_A 482 IELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.9e-23 Score=230.48 Aligned_cols=427 Identities=12% Similarity=0.077 Sum_probs=330.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+.+.|++++|.+.|+++++.+ +.+..+|..+..+|.+.|++++|++.++++++.+ +.+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHH
Confidence 5678889999999999999999999999875 5578889999999999999999999999999875 6678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE------GVTPNVVTLN 447 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~ 447 (757)
..++..|...|++++|...|+.+. . +.......+..+...+...+|.+.++.+... ...|+.
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~---- 164 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVLS----L----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN---- 164 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh----c----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----
Confidence 999999999999999999997442 1 1122233355566667778999999998764 122333
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHcCCCCCH-----
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRKGLCAN-AVTYTILITAFC--------NVNNFQEAIKWFDDMSRAGCSADS----- 513 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~~----- 513 (757)
..+..+....+.+.+...+...... .+. ......+...+. ..|++++|..+|+++.+.. +.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHH
Confidence 3344455666666665544333322 112 112333333322 2357899999999998764 2332
Q ss_pred --hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 514 --VVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLIS 591 (757)
Q Consensus 514 --~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 591 (757)
.++..+...+...|++++|...++++.+. .|+...+..+...|...|++++|...++++.+.. +.+..++..+..
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 318 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQ 318 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHH
Confidence 35677778889999999999999999987 4568889999999999999999999999999875 567889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVE 671 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 671 (757)
.|...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+. .+.+...+..++..|.+.|+++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999864 235678899999999999999999999999883 3345678999999999999999
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 672 LALSLMEEMKVKE-----VRPNTNTYNAMFKGLRQK----------NMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 672 ~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
+|...|+++.+.. .......+..+..++.+. |++++|...++++++. .+.+..++..++..+..
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 9999999988532 111223345566778888 9999999999999975 23456889999999999
Q ss_pred cCCHHHHHHHHhhc
Q 048807 737 AGQTEKLKKFVQGY 750 (757)
Q Consensus 737 ~g~~~~A~~~~~~~ 750 (757)
.|+.++|.+.+++.
T Consensus 475 ~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 475 MEKIDEAIELFEDS 488 (537)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH
Confidence 99999999999884
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=2e-18 Score=188.79 Aligned_cols=362 Identities=13% Similarity=0.070 Sum_probs=180.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh----cCChhHHHH
Q 048807 279 WDVLHVLMKFDAPLEAASCNALLNALGR----EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK----LYRADEALE 350 (757)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 350 (757)
.+.+....+.| ++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444432 45555555555555 556666666666555543 34445555555555 555555666
Q ss_pred HHHHHHhCCCCCcccccCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cC
Q 048807 351 VFEKMIAGKETAEISVEPDVIIFNTLIDGLCK----VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK----SG 422 (757)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 422 (757)
.|++..+.+ +...+..|...|.. .+++++|.+.|++.. .. .+...+..+...|.. .+
T Consensus 101 ~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~---~~---~~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 101 WYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA---EQ---GRDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp HHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HT---TCHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---HC---CCHHHHHHHHHHHHcCCCCCC
Confidence 555555432 34455555555555 455555555555543 11 234445555555544 44
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 048807 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR----HGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN----VNNF 494 (757)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 494 (757)
+.++|++.|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 5555555555555442 34444445544444 455555555555554432 33344444444443 4445
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK----KKMLDKAYEV 570 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~ 570 (757)
++|..+|++..+.+ +.. .+..+...|.. .++.++|...
T Consensus 240 ~~A~~~~~~a~~~~---~~~-----------------------------------a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSI-----------------------------------AQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHHHHTTT---CHH-----------------------------------HHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHH-----------------------------------HHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 55555554444432 333 34444444444 4555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 048807 571 LQEMEDIGMTPNSVTYNTLISFLSKS-----GNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG---HVDEAMKIFK 642 (757)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~ 642 (757)
|++..+.| +...+..|...|... +++++|...|++..+.+ +...+..+...|...| ++++|++.|+
T Consensus 282 ~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 282 YRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 55554443 333444444444444 45555555555555542 3344444444444434 4555555555
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 048807 643 ELSSSSNVSPNTVIYNILIDSLCK----NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ----KNMLDKAFKLMDR 714 (757)
Q Consensus 643 ~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 714 (757)
+..+ . .+...+..|...|.. .+++++|...|++..+.| +...+..+...|.+ .++.++|...|++
T Consensus 356 ~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 356 KAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 5554 1 234445555555555 455555555555555532 34455555555554 4555555555555
Q ss_pred HHHc
Q 048807 715 MIEH 718 (757)
Q Consensus 715 ~~~~ 718 (757)
+.+.
T Consensus 429 A~~~ 432 (490)
T 2xm6_A 429 ASTN 432 (490)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 5554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=2e-19 Score=187.94 Aligned_cols=331 Identities=12% Similarity=0.032 Sum_probs=211.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
|+..+..+...+.+.|++++|+..|+++.+.++. +..+|..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4557788999999999999999999999988654 78999999999999999999999999999874 446678899999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCccccc---CCHhHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhhcC
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVE---PDVIIFNTL------------IDGLCKVGKQEEALGLIEQMRLRLQK 402 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (757)
.+...|++++|...++++++.. + .+...+..+ ...+...|++++|.+.++++..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---- 148 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE---- 148 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHcCChHHHHHHHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----
Confidence 9999999999999999999864 3 345555544 3455555555555555555531
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048807 403 GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYT 482 (757)
Q Consensus 403 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 482 (757)
..+.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 226 (359)
T 3ieg_A 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFA 226 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHH
Confidence 123345555555555555555555555555555542 224445555555555555555555555555543221 222211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 048807 483 ILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI----VCYNHLISGF 558 (757)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~ 558 (757)
.+... . .......+...+.+.|++++|...++++.+.... +. ..+..+...+
T Consensus 227 ~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 227 HYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHH
Confidence 11000 0 0001112344566666677776666666665322 22 2244566667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 559 CKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFC 629 (757)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 629 (757)
.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++++.. +.+...+..+..+..
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 77777777777777776653 4466677777777777777777777777777643 223455555555544
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=6.6e-18 Score=184.61 Aligned_cols=362 Identities=14% Similarity=0.067 Sum_probs=265.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 048807 243 LVGLVSKFAEHGVFPNAVWLTQLITRFCR----KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR----EGDFKRMN 314 (757)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 314 (757)
.+..+....+.| +...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555555554 78899999999998 899999999999999874 77899999999999 99999999
Q ss_pred HHHHHHHHCCCCCccchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH----cCCH
Q 048807 315 QLFTEMKENDIEPSVVTFGTIINRLCK----LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK----VGKQ 386 (757)
Q Consensus 315 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 386 (757)
+.|++..+.| +...+..|...|.. .+++++|++.|++..+.+ +..++..|...|.. .++.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---------RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999876 66778888888888 889999999999998765 67888999999988 8899
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 048807 387 EEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK----SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR----HGR 458 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 458 (757)
++|.+.|++.. .. .+...+..+...|.. .++.++|.++|++..+.| +...+..+...|.. .++
T Consensus 168 ~~A~~~~~~a~---~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 168 VMAREWYSKAA---EQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHHHHHHHHH---HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHH---HC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 99999999985 32 478899999999998 899999999999999875 67788889988887 899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CCh
Q 048807 459 INSAVEFFQEVTRKGLCANAVTYTILITAFCN----VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA-----GRM 529 (757)
Q Consensus 459 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~ 529 (757)
+++|..+|++..+.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... +++
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998874 56677778888877 788888888888887764 555666666666655 566
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK---MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAA 602 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 602 (757)
++|...|++..+.| +...+..+...|...| ++++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 66666666655543 3344455555554433 4455555555555442 34444444444444 4445555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhh
Q 048807 603 RRVLKKMVKEGLVPTVVTYGALIHAFCV----NGHVDEAMKIFKELSS 646 (757)
Q Consensus 603 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 646 (757)
...|++..+.+ +...+..|...|.. .+++++|...|++..+
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 55555444432 23344444444444 4444444444444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=5.9e-19 Score=184.34 Aligned_cols=333 Identities=13% Similarity=0.072 Sum_probs=220.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
++..+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|++++|+..++++++.. +.+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCcchH
Confidence 45677778888888888888888888888764 4456777888888888888888888888888754 446778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM---PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTL 449 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (757)
+..+...|...|++++|...++++. ...+ .+...+..+...+. ...+..+
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~ 126 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVL----KSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQ 126 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH----TSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH----hcCCcccChHHHHHHHHHHHH-----------------------HHHHHHH
Confidence 8888888888888888888888874 2222 24444444421100 0012222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048807 450 VDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRM 529 (757)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 529 (757)
...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3444455555555555555544422 244445555555555555555555555554432 33444555555555555555
Q ss_pred hHHHHHHHHHHHCCCCCCHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVC------------YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV----TYNTLISFL 593 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~ 593 (757)
++|...+++..+.... +... ...+...+.+.|++++|...++++.+.. +.+.. .+..+...+
T Consensus 205 ~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHH
Confidence 5555555555443211 2222 2234677899999999999999999875 33432 355678899
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc
Q 048807 594 SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN 667 (757)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 667 (757)
.+.|++++|...++++++.. +.+..++..+...|...|++++|...|+++.+. .+.+...+..+..+....
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence 99999999999999999863 347889999999999999999999999999882 233466777777766543
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=5.9e-16 Score=176.15 Aligned_cols=532 Identities=12% Similarity=0.085 Sum_probs=347.3
Q ss_pred cCCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHH
Q 048807 125 ERMSPESLFDLYKACKDQN--IPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFN 202 (757)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 202 (757)
..|.+.+|+++++++.-.+ +..+....+.|+.+..+. +.........++. .+....++..+...|.+++|..
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-----~~d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-----NYDAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-----hccHHHHHHHHHhCCCHHHHHH
Confidence 4677788888888876332 123445666666666665 3344444444432 1224557888889999999999
Q ss_pred HHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 048807 203 VLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVL 282 (757)
Q Consensus 203 ~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 282 (757)
+|++.... ......++..+ ...++|.++.+++ .+..+|..+..++.+.|++++|++.|
T Consensus 1071 IYkKa~~~-------~~A~~VLie~i---------~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1071 IFRKFDVN-------TSAVQVLIEHI---------GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHcCCH-------HHHHHHHHHHH---------hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99986311 11111122111 2236676666654 35778999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 048807 283 HVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETA 362 (757)
Q Consensus 283 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 362 (757)
.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++.. -| ++
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele-~f---I~----- 1191 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE-EF---IN----- 1191 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH-HH---Hh-----
Confidence 774 378889999999999999999999999888764 44444556889999999988533 33 22
Q ss_pred cccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048807 363 EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN 442 (757)
Q Consensus 363 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 442 (757)
.++...|..+...|...|++++|..+|... ..|..++..|++.|++++|.+.+++.. +
T Consensus 1192 ----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1192 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 356677888999999999999999999976 279999999999999999999999873 6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048807 443 VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISG 522 (757)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 522 (757)
..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..+... +.....|+-+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 7899999999999999999988765432 366677789999999999999999998887654 4455566666666
Q ss_pred HHhc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHhCCCCC
Q 048807 523 LCQA--GRMNDASLVVSKLKEAGFRP------DIVCYNHLISGFCKKKMLDKAYEVL-------------QEMEDIGMTP 581 (757)
Q Consensus 523 ~~~~--g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~~~~~~~~~ 581 (757)
|++. ++..++.++|..-.. +++ +...|..++..|.+.|+++.|.... ...... ..
T Consensus 1324 yaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~ 1399 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VA 1399 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cc
Confidence 6654 455666666654322 222 4567999999999999999988322 222222 44
Q ss_pred CHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 582 NSVTYNTLISFLSKSG---------------NFSAARRVLKKMVKE----------GLVPTVVTYGALIHAFCVNGHVDE 636 (757)
Q Consensus 582 ~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~ 636 (757)
|...|...+..|...+ +.+++.++|.+.-.. ...-+...-.++...|....+++.
T Consensus 1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~ 1479 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 1479 (1630)
T ss_pred cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHH
Confidence 6667777777776555 555555555421100 000111222223333333333221
Q ss_pred HHHHHHHhhh------cCCCCC-CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 637 AMKIFKELSS------SSNVSP-NTVIYNIL-IDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 637 A~~~~~~~~~------~~~~~p-~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
-....+.... ...+.. +..-+.-+ ...|.+.|+|.+|.+++++.. .|.-.+.+..++|+.+.+
T Consensus 1480 Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~~a~~S~d~e~~ 1550 (1630)
T 1xi4_A 1480 LRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQYASESKDTELA 1550 (1630)
T ss_pred HHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHHHHHHcCCHHHH
Confidence 1111110000 000011 11112222 334455588888888887643 244556777888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 709 FKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKK 745 (757)
Q Consensus 709 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 745 (757)
.+++.-..+. -+...|...+-.|...-+.+-+.+
T Consensus 1551 e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1551 EELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHH
Confidence 8887777754 344566666666666555444443
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.1e-17 Score=184.83 Aligned_cols=422 Identities=11% Similarity=0.051 Sum_probs=248.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
|.|..+|..++. +.+.|++++|..+|+++++..|. +...|...+..+.+.|++++|.++|++++... |+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 446666776776 36667777777777777765433 56667777777777777777777777776652 455555555
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHhCCCCCcccc-cCCHhHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhh
Q 048807 336 INRL-CKLYRADEALE----VFEKMIAGKETAEISV-EPDVIIFNTLIDGLCK---------VGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 336 i~~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~ 400 (757)
+... ...|+.++|.+ +|++++..- +. +++...|...+....+ .|++++|..+|++..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~-----g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al--- 157 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKI-----GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC--- 157 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHT-----TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH---
Confidence 5322 33455555554 555544321 11 1234556666665544 456666666666652
Q ss_pred cCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH------HHC
Q 048807 401 QKGCMPN--AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEV------TRK 472 (757)
Q Consensus 401 ~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~ 472 (757)
. .+.+ ...|..........|. .+...++. .+.++++.|..++.++ .+.
T Consensus 158 -~-~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 158 -V-NPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp -T-SCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred -h-chhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 1111 1222221111000000 00000110 0234455565555542 221
Q ss_pred C---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------c
Q 048807 473 G---LCAN--------AVTYTILITAFCNV----NNF----QEAIKWFDDMSRAGCSADSVVYFTLISGLCQ-------A 526 (757)
Q Consensus 473 ~---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~ 526 (757)
. ++|+ ...|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhc
Confidence 1 2232 23454444332221 122 36677787777653 4567777777777765 6
Q ss_pred CChh-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCC
Q 048807 527 GRMN-------DASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS-VTYNTLISFLSKSGN 598 (757)
Q Consensus 527 g~~~-------~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~ 598 (757)
|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|+
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcC
Confidence 7776 788888887762223357778888888888888888888888888763 2233 477777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALIHA-FCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLM 677 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 677 (757)
+++|..+|++.++.. +.+...+...+.. +...|+.++|..+|++..+. .+.+...|..++..+.+.|+.++|..+|
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 888888888888752 1223333322222 33578888888888877762 2335677888888888888888888888
Q ss_pred HHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 678 EEMKVKE-VRPN--TNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 678 ~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8887742 1222 346777777777788888888888887763
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=5.2e-16 Score=176.60 Aligned_cols=421 Identities=12% Similarity=0.134 Sum_probs=313.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDA--PLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGT 334 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 334 (757)
.|+.-....+.+|...|.+.+|+++++++...+. ..+....+.++....+. +..+..++..+.... ....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 3444556678899999999999999999984421 13456777788777776 556666666655422 1344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
+...+...|.+++|..+|++.. ......+.++. ..|++++|.++.++. .+..+|..+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----------~~~~A~~VLie---~i~nldrAiE~Aerv---------n~p~vWsqL 1111 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----------VNTSAVQVLIE---HIGNLDRAYEFAERC---------NEPAVWSQL 1111 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----------CHHHHHHHHHH---HHhhHHHHHHHHHhc---------CCHHHHHHH
Confidence 7778889999999999999862 22333344433 778999999998876 257789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
..++.+.|++++|++.|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 99999999999999999664 377888999999999999999999999888764 3444445689999999988
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
++.... ++ .++...|..+...|...|++++|..+|... ..|..++..|.+.|++++|.+.+++.
T Consensus 1184 eele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 853333 22 346677778999999999999999999875 36899999999999999999999876
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++.... .. +-..
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~-Le-raH~ 1314 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG-LE-RAHM 1314 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cC-hhHh
Confidence 366889999999999999999988776532 3566677889999999999999999987765 22 2334
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHcCCHHHHHHH-------------HH
Q 048807 655 VIYNILIDSLCKN--NQVELALSLMEEMKVKEVRP------NTNTYNAMFKGLRQKNMLDKAFKL-------------MD 713 (757)
Q Consensus 655 ~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~ 713 (757)
..|+-|..+|++. ++..++.++|..-.. ++| +...|..++-.|.+.|+++.|... |+
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk 1392 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFK 1392 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHH
Confidence 4677777777764 467777777765433 333 456788899999999999988832 22
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHhh
Q 048807 714 RMIEHACHPDYISMEILTEWLSEAG---------------QTEKLKKFVQG 749 (757)
Q Consensus 714 ~~~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~ 749 (757)
..+. -..|...|...+..|...+ +.+++.+++++
T Consensus 1393 ~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1393 DIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 2221 2345666666666666655 66677666664
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-18 Score=178.57 Aligned_cols=200 Identities=14% Similarity=0.084 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++++.. +.+..+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 92 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNPVS 92 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSTHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHH
Confidence 34445555555556666666666666665543 3344445555555566666666666666665543 344555
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 373 FNTLIDGLCKVG-KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVD 451 (757)
Q Consensus 373 ~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (757)
|..+...+...| ++++|.+.|+++. ...+.+...|..+...+...|++++|++.++++.+.... +...+..+..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 167 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKAT----TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHH----TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH----HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 666666666666 6666666666552 222334555666666666666666666666665554221 3344555555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 452 GMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
.+...|++++|...++++.+.... +..++..+...|...|++++|...++++.+
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 555666666666666655554322 445555555555556666666555555544
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.7e-18 Score=177.15 Aligned_cols=287 Identities=13% Similarity=0.020 Sum_probs=174.1
Q ss_pred CCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 048807 326 EPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM 405 (757)
Q Consensus 326 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 405 (757)
+.+...+..++..+...|++++|+++|+++++.+ +.+...+..++..+...|++++|..+++++.. ..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~ 87 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVD----LYP 87 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH----HCT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH----hCc
Confidence 4456666777777777788888888888877754 45556666677777777888888888777742 234
Q ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048807 406 PNAVTYNCLINGFCKSG-NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTIL 484 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 484 (757)
.+...|..+...+...| ++++|.+.|+++.+... .+...+..+...+...|++++|...++++.+.... +...+..+
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 165 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYI 165 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 45667777777777777 77777777777776532 24566777777777777777777777777665433 34455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHHHHH
Q 048807 485 ITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAG--------FRPDIVCYNHLIS 556 (757)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------~~~~~~~~~~li~ 556 (757)
...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 666777777777777777666553 3445566666666666666666666666555421 0122344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 557 GFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
.|...|++++|...++++.+.. +.+...+..+...|.+.|++++|...++++++.. +.+...+..+..++
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555555555555555555443 2334444555555555555555555555544432 11334444444443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=5.5e-17 Score=179.19 Aligned_cols=413 Identities=8% Similarity=0.007 Sum_probs=273.3
Q ss_pred ccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCChhHHHH
Q 048807 237 SVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNAL-GREGDFKRMNQ 315 (757)
Q Consensus 237 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~ 315 (757)
.+..+++..+++++++. .|.+...|..++..+.+.|++++|.++|+++++.. |++..|...+... ...|+.++|.+
T Consensus 25 ~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHH
Confidence 45678899999999887 57788899999999999999999999999999875 4788888888543 46788888776
Q ss_pred ----HHHHHHHC-CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc-----CC
Q 048807 316 ----LFTEMKEN-DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV-----GK 385 (757)
Q Consensus 316 ----~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~ 385 (757)
+|++.+.. |..|+.. .+-..|.+ ++.. ....+ .-....-+......|.+. ..
T Consensus 102 ~~~~~~~~al~~~g~~~~~~---~~w~~~~~---~~~~------~~~~~------~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSY---QIWVDYIN---FLKG------VEAVG------SYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCH---HHHHHHHH---HHHH------SCCCS------STTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHCCCCcccH---HHHHHHHH---HHhc------CCCcc------cHHHHhHHHHHHHHHHHHHhchhhh
Confidence 67666553 5444431 12222322 1111 00000 000000111111111110 11
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHH
Q 048807 386 QEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLM------KQEG---VTPN--------VVTLNT 448 (757)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~ 448 (757)
.+.....+..+... .+..+...++. .+.+++++|..++..+ .+.. ++|+ ...|..
T Consensus 164 ~~~~~~~~~~~e~~------~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 164 IEQLWRDYNKYEEG------INIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp HHHHHHHHHHHHHH------HCHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------hchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 11111111111100 01111222221 1235566777666652 2221 2333 234555
Q ss_pred HHHHHHHc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH
Q 048807 449 LVDGMCRH----GRI----NSAVEFFQEVTRKGLCANAVTYTILITAFCN-------VNNFQ-------EAIKWFDDMSR 506 (757)
Q Consensus 449 li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~ 506 (757)
.+...... ++. +++..+|++++...+ .+...|..++..+.+ .|+++ +|..+|++.++
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 55433322 232 367788998888633 378888888888775 68876 89999999986
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 507 AGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD-I-VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV 584 (757)
Q Consensus 507 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 584 (757)
.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+.. +.+..
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~ 391 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHH 391 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchH
Confidence 333557888999999999999999999999999986 443 3 589999999999999999999999999863 33333
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--HHHHHHHH
Q 048807 585 TYNTLISF-LSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN--TVIYNILI 661 (757)
Q Consensus 585 ~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li 661 (757)
.|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++........|+ ...|...+
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33333222 346899999999999998863 336788999999999999999999999999883333332 45788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 048807 662 DSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
....+.|+.+.+..+++++.+.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999998863
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.5e-18 Score=180.57 Aligned_cols=305 Identities=12% Similarity=0.016 Sum_probs=180.2
Q ss_pred HHcCChhHHHH-HHHHHHHCCCC-C--ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH
Q 048807 305 GREGDFKRMNQ-LFTEMKENDIE-P--SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL 380 (757)
Q Consensus 305 ~~~g~~~~A~~-~~~~m~~~g~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 380 (757)
...|++++|.+ .|++....... | +...+..+...+.+.|++++|+..|+++++.. +.+..++..++..|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQ 108 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 34477888887 77766543211 1 34567778888888888888888888888764 56777888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 048807 381 CKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRIN 460 (757)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 460 (757)
.+.|++++|.+.|+++.. ..+.+..++..++..|...|++++|++.++++.+.... +...+..+... .
T Consensus 109 ~~~g~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~ 176 (368)
T 1fch_A 109 AENEQELLAISALRRCLE----LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A 176 (368)
T ss_dssp HHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------
T ss_pred HHCcCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h
Confidence 888888888888888742 23557778888888888888888888888888876422 22222111000 0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 461 SAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSA-DSVVYFTLISGLCQAGRMNDASLVVSKL 539 (757)
Q Consensus 461 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (757)
.. .. ....+..+...+ ..|++++|...|+++.+..... +..++..+...+...|++++|...++++
T Consensus 177 ~~-----------~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 177 GG-----------AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp ---------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh-----------hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00 00 000111122222 5556666666666665543111 3555666666666666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---
Q 048807 540 KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP--- 616 (757)
Q Consensus 540 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--- 616 (757)
.+.. +.+..++..++..|...|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++++.....
T Consensus 244 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 244 LSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 5542 2245566666666666666666666666666553 4455666666666666667777666666665532110
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 617 -------TVVTYGALIHAFCVNGHVDEAMKIFKE 643 (757)
Q Consensus 617 -------~~~~~~~li~~~~~~g~~~~A~~~~~~ 643 (757)
...+|..+..+|...|+.++|..++++
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 145666777777777777777666553
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4.2e-18 Score=178.80 Aligned_cols=305 Identities=13% Similarity=0.023 Sum_probs=167.3
Q ss_pred HHHcCChhHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 269 FCRKGKTDEAWD-VLHVLMKFDAP---LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 269 ~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
+.-.|++++|.+ .|++..+..+. .+...+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 88876655432 135667888888999999999999999998875 4466778888888999999
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI 424 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (757)
+++|++.|+++++.+ +.+..++..++..|...|++++|.+.++++.. ..+.+...+..+...
T Consensus 114 ~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~------- 175 (368)
T 1fch_A 114 ELLAISALRRCLELK-------PDNQTALMALAVSFTNESLQRQACEILRDWLR----YTPAYAHLVTPAEEG------- 175 (368)
T ss_dssp HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSTTTGGGCC------------
T ss_pred HHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCcHHHHHHHHHH-------
Confidence 999999999988864 56788888999999999999999999988852 222333333211000
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 425 EKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA-NAVTYTILITAFCNVNNFQEAIKWFDD 503 (757)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (757)
.. . ..+ ...+..+...+ ..|++++|...++++.+..... +..++..+...|.+.|++++|+..|++
T Consensus 176 ~~-------~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 176 AG-------G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp ----------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hh-------h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 0 000 00011111111 4444444444444444432211 244444444555555555555555554
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 048807 504 MSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPN- 582 (757)
Q Consensus 504 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~- 582 (757)
+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+.. +.+
T Consensus 243 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 319 (368)
T 1fch_A 243 ALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSR 319 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC-
T ss_pred HHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCC
Confidence 44432 2334445555555555555555555555544432 1234455555555555555555555555554432 111
Q ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048807 583 ----------SVTYNTLISFLSKSGNFSAARRVLKK 608 (757)
Q Consensus 583 ----------~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (757)
..+|..+..+|...|++++|..++++
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 45566666666666666666655543
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=9.9e-17 Score=174.60 Aligned_cols=391 Identities=10% Similarity=-0.035 Sum_probs=245.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---------CC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCC
Q 048807 145 PLSINSATLLIRFFGKVSMYDYSLLVYNELDNN---------LR-NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQF 214 (757)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 214 (757)
+.....|+.|...+...|++++|++.|+++... .+ ...+|+.++.+|...|++++|+..|+++......+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567999999999999999999999876431 22 23578999999999999999999999886521000
Q ss_pred CCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHhCCCCC
Q 048807 215 PVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRK--GKTDEAWDVLHVLMKFDAPL 292 (757)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~ 292 (757)
. ...-.....++..+..++.+. +++++|++.|+++.+.++.
T Consensus 128 --------------------~----------------~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~- 170 (472)
T 4g1t_A 128 --------------------S----------------SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK- 170 (472)
T ss_dssp --------------------C----------------CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-
T ss_pred --------------------c----------------cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-
Confidence 0 000112344555555555554 4689999999999988755
Q ss_pred CHHHHHHHHHHH---HHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCccc
Q 048807 293 EAASCNALLNAL---GREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK----LYRADEALEVFEKMIAGKETAEIS 365 (757)
Q Consensus 293 ~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 365 (757)
+...+..+..++ ...++.++|++.|++.++.+ +.+..++..+...+.. .|+.++|.+.+++.+...
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~------ 243 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA------ 243 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC------
Confidence 677776666553 45678889999999988864 3355566666555544 467889999999988865
Q ss_pred ccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 366 VEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVT 445 (757)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (757)
+.+..++..+...|...|++++|.+.+++.. ...+.+..++..+...|...+....+..
T Consensus 244 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~lg~~y~~~~~~~~~~~---------------- 302 (472)
T 4g1t_A 244 -PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL----EYIPNNAYLHCQIGCCYRAKVFQVMNLR---------------- 302 (472)
T ss_dssp -SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred -ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH----HhCCChHHHHHHHHHHHHHHHHHhhhHH----------------
Confidence 6678889999999999999999999999984 2345567788887777654321111100
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHH-H
Q 048807 446 LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV--VYFTLIS-G 522 (757)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~ 522 (757)
...........+.+++|...++++.+.... +..++..+...|...|++++|+..|++.++....+... .+..+.. .
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 000001111223356677777777665432 44566677777888888888888888777654222211 1222222 2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 523 LCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAA 602 (757)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 602 (757)
..+.|++++|+..|++..+. .|+..... +....+..++++..+.+ +.+..+|..+...|...|++++|
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34667888888888887775 33332221 12234455566666554 56777888888888888888888
Q ss_pred HHHHHHHHhCC
Q 048807 603 RRVLKKMVKEG 613 (757)
Q Consensus 603 ~~~~~~m~~~~ 613 (757)
++.|++.++.+
T Consensus 450 ~~~y~kALe~~ 460 (472)
T 4g1t_A 450 DEDSERGLESG 460 (472)
T ss_dssp -----------
T ss_pred HHHHHHHHhcC
Confidence 88888888754
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=2.9e-18 Score=179.83 Aligned_cols=263 Identities=10% Similarity=-0.001 Sum_probs=186.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
.+..+...+.+.|++++|+..|+++++.. +.+..+|..+...+...|++++|...|+++.+.. +.+..++..++..|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555666666666666666666666543 3455666666666666666666666666666553 224566666666677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTP----------NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PTVVTYGALIHAF 628 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~ 628 (757)
..|++++|...|+++.+.. +. ....+..+...+.+.|++++|...++++++.... ++..++..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7777777777776666542 11 1223345577888889999999999998876422 1578888899999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
...|++++|+..++++.+. .+.+..+|..++.+|.+.|++++|+..|+++.+.. +.+..+|..++.+|.+.|++++|
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998872 33567789999999999999999999999998752 33578899999999999999999
Q ss_pred HHHHHHHHHcCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 709 FKLMDRMIEHACHP-------------DYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 709 ~~~~~~~~~~g~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
...++++++. .| +..+|..+..++...|+.+.+.+..++-
T Consensus 301 ~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999864 22 2478899999999999999999988763
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=5.9e-18 Score=177.53 Aligned_cols=275 Identities=10% Similarity=-0.035 Sum_probs=153.8
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC
Q 048807 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN 407 (757)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 407 (757)
+...+..+...+.+.|++++|++.|+++++.. +.+..+|..++..|.+.|++++|++.|+++.. ..+.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~ 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLE----LQPNN 132 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCC
Confidence 44557777788888888888888888887764 55677788888888888888888888887742 23456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 408 AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV-VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILIT 486 (757)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 486 (757)
..+|..++..|...|++++|++.|+++.+.. |+. ..+..+. .....+..+..
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~ 185 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSK 185 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-----------------------------------------
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHH
Confidence 7778888888888888888888888777642 111 1111110 01112233344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 487 AFCNVNNFQEAIKWFDDMSRAGCSA--DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKML 564 (757)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 564 (757)
.+...|++++|+..|+++.+.. +. +..++..+...+...|++++|...++++.+.. +.+..+|..+..+|.+.|++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 4444444555555554444432 11 34444555555555555555555555544432 22344555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCC
Q 048807 565 DKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-----------PTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~ 633 (757)
++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++++.... .+...|..+..++...|+
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 55555555555543 334555555555566666666666666555542100 023456666666666666
Q ss_pred HHHHHHHHHH
Q 048807 634 VDEAMKIFKE 643 (757)
Q Consensus 634 ~~~A~~~~~~ 643 (757)
.+.+.++.++
T Consensus 343 ~~~a~~~~~~ 352 (365)
T 4eqf_A 343 PELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.4e-16 Score=173.30 Aligned_cols=386 Identities=13% Similarity=-0.049 Sum_probs=249.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF--------DAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN---- 323 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 323 (757)
......||.|...|...|++++|++.|++..+. ..+...++|+.+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344568999999999999999999999988653 11225688999999999999999999999987652
Q ss_pred -C-CCC-ccchHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH---HHcCCHHHHHHHHHH
Q 048807 324 -D-IEP-SVVTFGTIINRLCKL--YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL---CKVGKQEEALGLIEQ 395 (757)
Q Consensus 324 -g-~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~ 395 (757)
+ ..+ ...++..+..++.+. +++++|++.|+++++.+ |.+...+..+...+ ...++.++|++.+++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-------p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-------PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1 011 234555555556554 46899999999999864 44566666665553 456777889988888
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048807 396 MRLRLQKGCMPNAVTYNCLINGFCK----SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
... -.+.+..++..+...+.. .|+.++|.+.+++..+.. +.+..++..+...|...|++++|...++++.+
T Consensus 201 al~----l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 201 AIR----LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHH----HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhh----cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 742 235567777776665554 467788999999888764 33677888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048807 472 KGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCY 551 (757)
Q Consensus 472 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 551 (757)
..+. +..++..+...|...+....+.. ...........+.+++|...++...+... .+..++
T Consensus 276 ~~p~-~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 337 (472)
T 4g1t_A 276 YIPN-NAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVC 337 (472)
T ss_dssp HSTT-CHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCH
T ss_pred hCCC-hHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhh
Confidence 7543 66777777766643221111100 00011111122345778888888776532 245567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 552 NHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS--VTYNTLIS-FLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
..+...|...|++++|.+.|++.++....+.. ..+..+.. .+...|++++|+..|++.++. .|+......
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~----- 410 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK----- 410 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH-----
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH-----
Confidence 78888888899999999999888877432221 12333332 234678899999999988875 454332222
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 684 (757)
....+.++++...+. -+.+..+|..++.+|...|++++|++.|++.++.+
T Consensus 411 ----~~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 411 ----MKDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp ----HHHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred ----HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 233445555555551 23456688899999999999999999999988753
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1e-17 Score=171.68 Aligned_cols=282 Identities=13% Similarity=0.126 Sum_probs=127.4
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHH
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALE 350 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 350 (757)
+.|++++|.++++++. +..+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6688999999998883 3358999999999999999999999652 467788889999999999999999
Q ss_pred HHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 351 VFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLEL 430 (757)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 430 (757)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...
T Consensus 83 yl~~ark~--------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 83 YLQMARKK--------ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp ----------------------------------CHHHHTTTTT----------CC----------------CTTTHHHH
T ss_pred HHHHHHHh--------CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88777663 3557788889999999999998887764 35667999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048807 431 FHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCS 510 (757)
Q Consensus 431 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 510 (757)
|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----- 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----- 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----
Confidence 9876 36888999999999999999998888 278899999999999999999966555432
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------C
Q 048807 511 ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKK--KMLDKAYEVLQEMEDIGMTP------N 582 (757)
Q Consensus 511 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~ 582 (757)
..+.-...++..|.+.|++++|..+++...... +.....|+.+.-.|++- +++.+.++.|..- .+++| +
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~ 281 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQ 281 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 233445568888899999999999998887664 44567788887777764 3444555554422 12222 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q 048807 583 SVTYNTLISFLSKSGNFSAARRV 605 (757)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~ 605 (757)
...|..++..|.+.++++.|...
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHH
Confidence 45688888888888999888764
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=8.7e-17 Score=165.49 Aligned_cols=265 Identities=8% Similarity=-0.059 Sum_probs=191.7
Q ss_pred chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHH
Q 048807 182 HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVW 261 (757)
Q Consensus 182 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (757)
..+..++..+.+.|++++|+..|+++...+ +.+..+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------------~~~~~~ 57 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--------------------------------------------PEREEA 57 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------------TTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------------------------------------CCCHHH
Confidence 457788889999999999999999887642 224556
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH------
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI------ 335 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l------ 335 (757)
+..++..|.+.|++++|.+.|+++.+..+. +..++..+...|...|++++|.+.|+++.+.. +.+...+..+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 135 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVD 135 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHH
Confidence 777888999999999999999999987654 78899999999999999999999999999874 3333444433
Q ss_pred --------HH-HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC
Q 048807 336 --------IN-RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP 406 (757)
Q Consensus 336 --------i~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (757)
.. .+...|++++|.+.++++++.. +.+..++..++..|.+.|++++|.+.++++.. ..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~ 204 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE----LRPD 204 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCC
Confidence 22 3566777788888888877654 44677777777888888888888888877642 2344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----------
Q 048807 407 NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA---------- 476 (757)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------- 476 (757)
+..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.....
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 283 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence 56777777777777777777777777777653 2256667777777777777777777777766643221
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 477 -NAVTYTILITAFCNVNNFQEAIKWFDDM 504 (757)
Q Consensus 477 -~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (757)
+..+|..+..++.+.|+.++|..++++.
T Consensus 284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 284 ATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3556666667777777777777666543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=6.5e-17 Score=166.41 Aligned_cols=264 Identities=9% Similarity=-0.030 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..++..+.+.|++++|..+|+++.+..+. +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 345667888999999999999999999987654 88899999999999999999999999999875 4567788999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhhcCC
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTL--------------ID-GLCKVGKQEEALGLIEQMRLRLQKG 403 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~~~~~~ 403 (757)
+...|++++|++.++++++.. +.+...+..+ .. .+...|++++|.+.++++.. .
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~ 167 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE----M 167 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-------TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH----H
T ss_pred HHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh----h
Confidence 999999999999999999864 3333333333 22 25555666666666666531 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048807 404 CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTI 483 (757)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 483 (757)
.+.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+..++..
T Consensus 168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 245 (327)
T 3cv0_A 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYN 245 (327)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 23355666666666666666666666666665542 22445555566666666666666666666555432 24455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHhhHHHHHHHHHhcCChhHHHHHHH
Q 048807 484 LITAFCNVNNFQEAIKWFDDMSRAGCSA-----------DSVVYFTLISGLCQAGRMNDASLVVS 537 (757)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (757)
+...|.+.|++++|.+.|+++.+..... +..+|..+...+.+.|++++|..+++
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5555555666666665555555432110 23444444444555555555444443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=6e-17 Score=166.10 Aligned_cols=282 Identities=14% Similarity=0.170 Sum_probs=134.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
+.|++++|.+.++++- +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+..
T Consensus 15 ~~~~ld~A~~fae~~~------------~~~vWs~La~A~l~~g~~~eAIdsfika---------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC---------CCHHHHHHHHHHHHh
Confidence 6688999999999872 2349999999999999999999999764 477799999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKW 500 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (757)
.|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988777764 4467889999999999999999888774 25777999999999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048807 501 FDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMT 580 (757)
Q Consensus 501 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 580 (757)
|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+.
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----- 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----- 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----
Confidence 9976 37899999999999999999999988 278999999999999999999966555432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhcCCCCC------
Q 048807 581 PNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVN--GHVDEAMKIFKELSSSSNVSP------ 652 (757)
Q Consensus 581 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~p------ 652 (757)
.+..-...++..|.+.|++++|..+++..+... +-....|+-|...|++- +++.+.++.|. +..+++|
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~ 280 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAE 280 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHH
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHH
Confidence 233345578899999999999999999998754 44577788777777764 45555555554 2233433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSL 676 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~ 676 (757)
+...|..++..|.+.++++.|...
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Confidence 455688999999999999988874
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=5.3e-16 Score=156.08 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=165.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 532 (757)
....|++..|+...+................+..+|...|++++|+..++.. .+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3345666666666555433211111223344556666666666666555431 244555666666666666677777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 533 SLVVSKLKEAGFRP-DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 533 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
++.++++...+..| +...+..+..+|.+.|++++|.+.+++ +.+...+..++..|.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777666654333 445556666677777777777777665 34666677777777777777777777777776
Q ss_pred CCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048807 612 EGLVPTVVTY---GALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPN 688 (757)
Q Consensus 612 ~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 688 (757)
.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|...|+++++.. +-+
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 43 432211 12223333457777777777777762 34566677777777777777777777777777642 335
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 689 TNTYNAMFKGLRQKNMLDK-AFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKF 746 (757)
Q Consensus 689 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 746 (757)
..++..++.++...|+.++ +.++++++++ +.|+... +.+...+.+.++++..-
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHHH
Confidence 6677777777777777765 4577777775 3565533 22334445555555443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.7e-15 Score=152.47 Aligned_cols=251 Identities=12% Similarity=0.106 Sum_probs=162.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPD--VIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
.-....|++.+|+..+++.... .|+ ......+.++|...|++++|+..++. ..+|+..++..+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~l 71 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--------SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMF 71 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHH
Confidence 3445567788888777765432 232 23455667778888888777765432 235566777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTP-NVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
...+...|+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|+
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 777777777888888888777665434 455566666777777888888777766 3466677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 494 FQEAIKWFDDMSRAGCSADSVVY---FTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEV 570 (757)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (757)
+++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...
T Consensus 146 ~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777663 332111 112233334466777777777766652 34566666777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhC
Q 048807 571 LQEMEDIGMTPNSVTYNTLISFLSKSGNFSA-ARRVLKKMVKE 612 (757)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 612 (757)
|+++++.. +.+..++..++..+...|+.++ +.++++++++.
T Consensus 223 l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77766654 4456666666666666666654 45666666654
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=182.99 Aligned_cols=118 Identities=10% Similarity=0.164 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 048807 583 SVTYNTLISFLSKSGNFSAARRVLKKMVK---EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNI 659 (757)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 659 (757)
..||++||++|++.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+ .|+.||.+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHH
Confidence 34666666666666666666666655543 35566666666666666666666666666666666 566666666666
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 660 LIDSLCKNNQ-VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ 701 (757)
Q Consensus 660 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 701 (757)
+|+++++.|+ .++|.++|++|.+.|+.||..+|++++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666665 35566666666666666666666666554444
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=2.6e-15 Score=161.41 Aligned_cols=347 Identities=10% Similarity=0.010 Sum_probs=180.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDF---KRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
+...+.+.|++++|++.|++..+.| ++.++..+...|...|+. ++|.+.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667778888888888888887765 445566677777777777 8888888888754 45566666665555
Q ss_pred cC-----ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 342 LY-----RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 342 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
.| +.++|+..|++..+.+ +..++..|...|...+..+++.+.++.+...... .+...+..+..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~---g~~~a~~~Lg~ 149 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA---GYPEAGLAQVL 149 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---TCTTHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---CCHHHHHHHHH
Confidence 44 6778888888888765 2336777777777666544433333333211122 23456666677
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHG---RINSAVEFFQEVTRKGLCANAVTYTILITAFCNV-- 491 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 491 (757)
.|...+.++++.+....+.+.-...+...+..|...|...| +.++|++.|++..+.|.. +...+..|...|...
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 77776644433333222221111113336666777777777 677777777777776643 444445555555443
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 048807 492 --NNFQEAIKWFDDMSRAGCSADSVVYFTLISG-L--CQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK---- 562 (757)
Q Consensus 492 --g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---- 562 (757)
+++++|+..|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 56777777777665 33 44555555554 2 34566666666666666554 4455555555555 33
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 048807 563 -MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV----NGH 633 (757)
Q Consensus 563 -~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 633 (757)
++++|...|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCC
Confidence 5666666666555 32 44455555555444 2255555555555555432 2223333333432 234
Q ss_pred HHHHHHHHHHhhh
Q 048807 634 VDEAMKIFKELSS 646 (757)
Q Consensus 634 ~~~A~~~~~~~~~ 646 (757)
.++|..+|+...+
T Consensus 374 ~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 374 PLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=179.85 Aligned_cols=156 Identities=14% Similarity=0.180 Sum_probs=128.6
Q ss_pred cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 367 EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTL 446 (757)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 446 (757)
..-..+||+||++||+.|++++|.++|++|..+...|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44567999999999999999999999999875445689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HhhHHHH
Q 048807 447 NTLVDGMCRHGRI-NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSAD------SVVYFTL 519 (757)
Q Consensus 447 ~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~l 519 (757)
+++|+++|+.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. ..++..+++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 78999999999999999999999998766554 333344443 2233333 3344445
Q ss_pred HHHHHhcC
Q 048807 520 ISGLCQAG 527 (757)
Q Consensus 520 i~~~~~~g 527 (757)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 55555444
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=5.8e-15 Score=158.66 Aligned_cols=378 Identities=10% Similarity=0.037 Sum_probs=244.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 187 LIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLI 266 (757)
Q Consensus 187 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 266 (757)
+...+.+.|++++|++.|++..+.+ .++ .+..|.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~-------------------------------------------A~~~Lg 42 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSE-------------------------------------------AQVGLA 42 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCT-------------------------------------------GGGTCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHH-------------------------------------------HHHHHH
Confidence 5667778888889988888876532 111 222234
Q ss_pred HHHHHcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 267 TRFCRKGKT---DEAWDVLHVLMKFDAPLEAASCNALLNALGREG-----DFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 267 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
..|...|+. ++|++.|++..+. ++..+..+...+...| ++++|.+.|++..+.| +...+..|...
T Consensus 43 ~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 115 (452)
T 3e4b_A 43 DIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAML 115 (452)
T ss_dssp --------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 445556666 8888888888864 5566777777555555 7788999999998876 34477778888
Q ss_pred HHhcCChhH---HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 339 LCKLYRADE---ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 339 ~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
|...+..++ +.+.+.+....+ +...+..|...|...+.++++......+......+ +...+..|.
T Consensus 116 y~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg 183 (452)
T 3e4b_A 116 YLQYPHSFPNVNAQQQISQWQAAG---------YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELA 183 (452)
T ss_dssp HHHCGGGCTTCCHHHHHHHHHHHT---------CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 877665443 455555554433 56677888888888886555554433332111222 333888888
Q ss_pred HHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 048807 416 NGFCKSG---NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRH----GRINSAVEFFQEVTRKGLCANAVTYTILITA- 487 (757)
Q Consensus 416 ~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~- 487 (757)
..|.+.| +.++|++.|++..+.|.. +...+..+...|... +++++|..+|++.. . -+...+..|...
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHH
Confidence 8999999 899999999999988743 555556777777554 68899999999988 3 356677777776
Q ss_pred H--HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 488 F--CNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAG-----RMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 488 ~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
| ...+++++|+..|++..+.| +...+..|...|. .| ++++|...|++.. . -+...+..+...|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRR 330 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHC
Confidence 4 46889999999999998876 7778888888877 55 8999999998877 3 367778888888876
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 561 ----KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 561 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
..++++|...|++..+.| +......|...|.. ..+.++|...|+...+.|.. +.......+......+
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~ 406 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPA 406 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHH
Confidence 448999999999999877 33455667777764 45899999999999887632 2222222222222233
Q ss_pred CHHHHHHHHHHhhh
Q 048807 633 HVDEAMKIFKELSS 646 (757)
Q Consensus 633 ~~~~A~~~~~~~~~ 646 (757)
+..+|..+.++..+
T Consensus 407 ~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 407 QRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666655444
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.4e-14 Score=139.55 Aligned_cols=225 Identities=13% Similarity=0.073 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC----HHHHH
Q 048807 479 VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR--PD----IVCYN 552 (757)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~----~~~~~ 552 (757)
..+..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|...+++..+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555666666666666666655554 45555566666666666666666666655543211 11 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
.+...|...|++++|...|+++.+. .|+. ..+.+.|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7777777777777777777777765 3442 34556677888888888887753 224566777788888888
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 633 HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLM 712 (757)
Q Consensus 633 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (757)
++++|...++++.+. .+.+..+|..++..|.+.|++++|...|+++.+.. +.+...|..++.++.+.|++++|.+.+
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888888772 23456778888888888888888888888888752 345778888888888888888888888
Q ss_pred HHHHHc
Q 048807 713 DRMIEH 718 (757)
Q Consensus 713 ~~~~~~ 718 (757)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=1.3e-14 Score=139.22 Aligned_cols=200 Identities=10% Similarity=0.017 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
|++...+..+...+.+.|++++|+..|+++++.++. +...|..+...+.+.|++++|...|++.++.+ +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 566778889999999999999999999999998765 89999999999999999999999999999875 4466788888
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 048807 336 INRLCKL-----------YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC 404 (757)
Q Consensus 336 i~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 404 (757)
...+.+. |++++|+..++++++.+ |.+..+|..+...|...|++++|+..|++... ..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~- 148 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRYAPLHLQRGLVYALLGERDKAEASLKQALA---LE- 148 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC-
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cc-
Confidence 8999888 88888888888888764 45677788888888888888888888888752 22
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048807 405 MPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVT 470 (757)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 470 (757)
.+...+..+...|...|++++|+..|++..+... .+...+..+...+.+.|++++|...+++..
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 5677778888888888888888888888777532 256677777777777777777777776543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=5.2e-14 Score=140.46 Aligned_cols=245 Identities=7% Similarity=-0.019 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch----HHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT----FGTI 335 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l 335 (757)
..+......+.+.|++++|+..|+++.+..+. +..+|..+...|.+.|++++|.+.|+++.+.+ ++... |..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHH
Confidence 34556778888999999999999999988654 66688888899999999999999999998843 33333 7888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
...+...|++++|++.|+++++.. +.+..+|..+...|...|++++|.+.+++. ....+.+...|..+.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----l~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ----IRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG----CCSSCCCHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHH----hhcCCCcHHHHHHHH
Confidence 889999999999999999998864 556788999999999999999999999887 344566777888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHH
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGR---INSAVEFFQEVTRKG-LCAN------AVTYTILI 485 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li 485 (757)
..+...+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ..+|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 44445569999999999988863 2246777778888888887 778888888877642 1122 24677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048807 486 TAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLI 520 (757)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 520 (757)
..|...|++++|...|+++.+.. +.+...+..+.
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhh
Confidence 88888888888888888887764 34444444443
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.5e-14 Score=141.30 Aligned_cols=225 Identities=14% Similarity=0.100 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCc----cchHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDI--EPS----VVTFG 333 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 333 (757)
..+..+...+.+.|++++|++.|+++.+.+ .+..+|..+...|...|++++|.+.|+++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677788888888888888888888776 5777888888888888888888888888776421 011 35677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC 413 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 413 (757)
.+...+...|++++|+..|+++++.. |+. ..+.+.|++++|...++++. ...+.+...|..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~-------~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~ 144 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--------RTA-------DILTKLRNAEKELKKAEAEA----YVNPEKAEEARL 144 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--------CCH-------HHHHHHHHHHHHHHHHHHHH----HCCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--------chh-------HHHHHHhHHHHHHHHHHHHH----HcCcchHHHHHH
Confidence 77777778888888888888777642 332 34556677777777777763 222344566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 414 LINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++++.... +..+|..+...|.+.|+
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhh
Confidence 77777777777777777777776532 25666677777777777777777777777665432 45666666677777777
Q ss_pred HHHHHHHHHHHHHc
Q 048807 494 FQEAIKWFDDMSRA 507 (757)
Q Consensus 494 ~~~A~~~~~~m~~~ 507 (757)
+++|...|++..+.
T Consensus 223 ~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 223 YASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777666553
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=2.1e-14 Score=137.82 Aligned_cols=200 Identities=13% Similarity=0.005 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 291 PLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 291 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
+++...+..+...+.+.|++++|...|++.++.+ +.+...+..+...+.+.|++++|+..++++++.+ |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcH
Confidence 3577889999999999999999999999999875 5567889999999999999999999999999875 6678
Q ss_pred hHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048807 371 IIFNTLIDGLCKV-----------GKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV 439 (757)
Q Consensus 371 ~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (757)
.++..+...+.+. |++++|+..+++... ..+.+...|..+...+...|++++|++.|++..+..
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER----VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 8999999999888 777777777777642 234456677777777777777777777777777765
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 440 TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
.+...+..+...+...|++++|...|+++++..+. +...+..+...+.+.|++++|+..|++..
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 46667777777777777777777777777765432 56666667777777777777777666543
No 44
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=1e-11 Score=137.69 Aligned_cols=431 Identities=10% Similarity=0.035 Sum_probs=267.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC---hhHHHHH
Q 048807 275 TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR---ADEALEV 351 (757)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~ 351 (757)
..+.+..|++.+..++. |..+|..++..+.+.++++.+..+|++++.. ++.....|...+..-.+.|. .+.+..+
T Consensus 48 ~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34445556666666654 7888888888888888888888888888876 34456667777777777777 8888888
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCH--------HHHHHHHHHHHHhhcCCC-C-CCHHHHHHHHHHHH--
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQ--------EEALGLIEQMRLRLQKGC-M-PNAVTYNCLINGFC-- 419 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~~~-~-~~~~~~~~li~~~~-- 419 (757)
|++.+.... .+|++..|...+....+.++. +...++|+.... .-|. . .....|...+....
T Consensus 126 feRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~--~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 126 LARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVD--KCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH--HTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HhCcccccchHHHHHHHHHHHhc
Confidence 888876520 137788888877766665543 233466666542 2233 2 34567777776543
Q ss_pred -------HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHH--CCCC--
Q 048807 420 -------KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR-------------HGRINSAVEFFQEVTR--KGLC-- 475 (757)
Q Consensus 420 -------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~~~~--~~~~-- 475 (757)
.+++++.+..+|+.++......-..+|......-.. ..+++.|...+.++.. .++.
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 344577888888888853221112233222111111 1123334444444321 1110
Q ss_pred -------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 048807 476 -------------A-----N---AVTYTILITAFCNVN-------NFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAG 527 (757)
Q Consensus 476 -------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 527 (757)
| + ...|...+..--..+ ..+.+..+|++++.. ++.....|...+..+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 0 0 134555444332222 123455677777765 3557777888888778888
Q ss_pred ChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHH
Q 048807 528 RMNDAS-LVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM---------TPN------------SVT 585 (757)
Q Consensus 528 ~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~------------~~~ 585 (757)
+.++|. .+|++.... .+.+...|...+....+.|+++.|.++|+++.+... .|+ ...
T Consensus 358 ~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp CCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 888886 888887765 334566677777888888888888888888775310 121 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 586 YNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVN-GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
|...+....+.|..+.|..+|.++++.........|...+..-.+. ++.+.|.++|+...+. .+.+...|...++..
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 6677777777788888888888887751111233343333333333 4478888888888773 334566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 665 CKNNQVELALSLMEEMKVKEVRP--NTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
...|+.+.|..+|++.+.....+ ....|..++..-.+.|+.+.+.++.+++.+.
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77888888888888887753211 2356777777777888888888888888775
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=6.8e-14 Score=145.53 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGD-FKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
+..+|..+...+.+.|++++|++.|+++++.++. +..+|+.+..++.+.|+ +++|+..|+++++.+ +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4557788888999999999999999999998765 88999999999999996 999999999999975 44678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
..+...|++++|+..|+++++.+ +.+..+|..+..++.+.|++++|+..++++. ...+.+...|+.+..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al----~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLL----KEDVRNNSVWNQRYF 242 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH----HHCTTCHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCCHHHHHHHHH
Confidence 99999999999999999999876 6788999999999999999999999999985 234667889999999
Q ss_pred HHHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048807 417 GFCK-SGNIEKG-----LELFHLMKQEGVTPNVVTLNTLVDGMCRHG--RINSAVEFFQEVTRKGLCANAVTYTILITAF 488 (757)
Q Consensus 417 ~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 488 (757)
++.+ .|..++| ++.+++.++.... +...|..+...+...| ++++|.+.+.++ +. .+.+...+..++.+|
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHH
Confidence 9999 6665777 5888888876433 6778888888888877 688898888887 33 334677888888888
Q ss_pred HhcC---------CHHHHHHHHHHH-HHcCCCCCHhhHHHHHHHHH
Q 048807 489 CNVN---------NFQEAIKWFDDM-SRAGCSADSVVYFTLISGLC 524 (757)
Q Consensus 489 ~~~g---------~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~ 524 (757)
.+.| ..++|+++|+++ .+.+ +.....|..+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 8864 258899999888 5542 334455655555443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.3e-13 Score=143.50 Aligned_cols=248 Identities=13% Similarity=0.078 Sum_probs=204.6
Q ss_pred chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHH
Q 048807 182 HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVW 261 (757)
Q Consensus 182 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (757)
.+|+.+..++.+.|++++|++.|++++..+ +.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--------------------------------------------P~~~~a 133 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--------------------------------------------AANYTV 133 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------------------------------------------TTCHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--------------------------------------------ccCHHH
Confidence 457778889999999999999999988743 335567
Q ss_pred HHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 262 LTQLITRFCRKGK-TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 262 ~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
|+.+..+|.+.|+ +++|+..|+++++.++. +..+|+.+..++.+.|++++|+..|+++++.+ +.+...|..+..++.
T Consensus 134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~ 211 (382)
T 2h6f_A 134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQ 211 (382)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH
Confidence 8888889999997 99999999999998766 89999999999999999999999999999976 557888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK-VGKQEEA-----LGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
+.|++++|+..++++++.+ +.+..+|+.+...|.+ .|..++| ++.+++.. .-.+.+...|+.+
T Consensus 212 ~~g~~~eAl~~~~~al~l~-------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al----~l~P~~~~a~~~l 280 (382)
T 2h6f_A 212 EFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI----KLVPHNESAWNYL 280 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH----HHSTTCHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH----HHCCCCHHHHHHH
Confidence 9999999999999999976 6688999999999999 6665777 47777774 2245678899999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHH-HHCCCCCCHHHHH
Q 048807 415 INGFCKSG--NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHG---------RINSAVEFFQEV-TRKGLCANAVTYT 482 (757)
Q Consensus 415 i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~ 482 (757)
...+.+.| ++++|++.+.++ +. .+.+...+..++..|.+.| .+++|+++++++ .+... .....|.
T Consensus 281 ~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~ 357 (382)
T 2h6f_A 281 KGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWR 357 (382)
T ss_dssp HHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHH
T ss_pred HHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 99999988 689999999888 43 3446788899999998874 358999999998 66532 2455666
Q ss_pred HHHHHHH
Q 048807 483 ILITAFC 489 (757)
Q Consensus 483 ~li~~~~ 489 (757)
.+...+.
T Consensus 358 ~~~~~l~ 364 (382)
T 2h6f_A 358 YIGRSLQ 364 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=2e-11 Score=135.43 Aligned_cols=426 Identities=10% Similarity=0.059 Sum_probs=301.8
Q ss_pred hhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC---H
Q 048807 310 FKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK---Q 386 (757)
Q Consensus 310 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~ 386 (757)
..+-...|++.+..+ +-|..+|..++..+.+.+.++.+..+|++++.. +|.....|...+..-.+.|. +
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-------fP~~~~lW~~Yi~~E~~~~~~~~~ 119 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-------FPLMANIWCMRLSLEFDKMEELDA 119 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTC--CCCH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhhCCcchH
Confidence 344555666666665 568999999999999999999999999999987 57788899999999999999 9
Q ss_pred HHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHH
Q 048807 387 EEALGLIEQMRLRLQKGC--MPNAVTYNCLINGFCKSGNI--------EKGLELFHLMKQ-EGV-TPN-VVTLNTLVDGM 453 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~li~~~ 453 (757)
+.+.++|++. .... +|++..|...+....+.++. +...++|+..+. .|. .++ ...|...+...
T Consensus 120 ~~v~~lfeRa----l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~ 195 (679)
T 4e6h_A 120 AVIEPVLARC----LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFL 195 (679)
T ss_dssp HHHHHHHHHH----TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 9999999998 4444 38999999988876665543 344577877665 365 454 46777777654
Q ss_pred H---------HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHc--CC
Q 048807 454 C---------RHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN-------------VNNFQEAIKWFDDMSRA--GC 509 (757)
Q Consensus 454 ~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~--~~ 509 (757)
. ..++++.+..+|.+++......-..+|......--. ..+++.|...+.++... ++
T Consensus 196 ~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l 275 (679)
T 4e6h_A 196 EHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGL 275 (679)
T ss_dssp HTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhH
Confidence 3 244578899999999864322223344322211111 12344455555543221 11
Q ss_pred ----CC----------------C---HhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 510 ----SA----------------D---SVVYFTLISGLCQAG-------RMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 510 ----~~----------------~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
+. + ...|...+.---..+ ..+.+..+|++++... +-+...|...+..+.
T Consensus 276 ~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~ 354 (679)
T 4e6h_A 276 KRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQG 354 (679)
T ss_dssp CCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred hhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 11 0 134555554333322 1234567788887763 447888999999888
Q ss_pred hcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------CCC------------
Q 048807 560 KKKMLDKAY-EVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL---------VPT------------ 617 (757)
Q Consensus 560 ~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------ 617 (757)
..|+.++|. ++|++.... +|.+...|...+....+.|++++|.++|+++++... .|+
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 999999997 999999875 366777788889999999999999999999986310 132
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN-QVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
..+|...+....+.|..+.|..+|.++.+..+. .....|...+..-.+.+ +.+.|.++|+..++. ++.+...|...+
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~ 511 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHH
Confidence 236777788778889999999999999872011 22334444444444544 599999999999986 445677788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 697 KGLRQKNMLDKAFKLMDRMIEHACHP--DYISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
+.....|+.+.|..+|++++.....+ ....|...+..-...|+.+.+.++.+++.
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 98889999999999999998753222 23788899999999999999999988864
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=3e-12 Score=127.76 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048807 477 NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ----AGRMNDASLVVSKLKEAGFRPDIVCYN 552 (757)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~ 552 (757)
+..++..+...|...|++++|+..|++..+. .+..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455555666666666666666666666653 245566666666666 667777777776666654 566666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 553 HLISGFCK----KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVKEGLVPTVVTYGAL 624 (757)
Q Consensus 553 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (757)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777776 777777777777777654 56667777777777 777777777777777754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 625 IHAFCV----NGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK----NNQVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 625 i~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
...|.. .+++++|+..|++..+ . .+...+..+...|.+ .+++++|+..|++..+.+ +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 777776 7778888888777776 2 245667777777777 788888888888877753 356667777
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcC
Q 048807 697 KGLRQ----KNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 697 ~~~~~----~g~~~~A~~~~~~~~~~g 719 (757)
.+|.+ .|++++|.+++++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888887653
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=4.9e-13 Score=133.33 Aligned_cols=246 Identities=14% Similarity=0.075 Sum_probs=139.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT 410 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (757)
.+......+...|++++|+..|+++++.. +.+..++..+...|...|++++|.+.+++.... .........+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~ 76 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSAD 76 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHH
Confidence 34455566666677777777777666653 334456666666666777777777776666410 0001111233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (757)
|..+...+...|++++|++.|++..+... .+..++..+...|...|++++|...++++.+... .+..++..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH
Confidence 66666666666777777766666666432 2445666666666666666666666666665522 245555555522333
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHh
Q 048807 491 VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR---MNDASLVVSKLKEAG-FRPD------IVCYNHLISGFCK 560 (757)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~~~------~~~~~~li~~~~~ 560 (757)
.+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|.+
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 346677777766666553 3345555556666666665 555666665554431 0111 1345556666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNT 588 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 588 (757)
.|++++|.+.|+++.+.. |.+...+..
T Consensus 234 ~~~~~~A~~~~~~al~~~-p~~~~a~~~ 260 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALD-PTNKKAIDG 260 (272)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-ccHHHHHHH
Confidence 666666666666666553 334444333
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=5.3e-13 Score=131.41 Aligned_cols=202 Identities=15% Similarity=0.065 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..++..|...|++++|.+.|+++.+..+. +..++..+...|.+.|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 445666667777777777777777777665433 56666667777777777777777777766653 2345556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+...|++++|++.++++++.+. .+.+...+..++..|.+.|++++|.+.++++.. ..+.+...+..++..+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTL-----YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR----LNRNQPSVALEMADLL 185 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTT-----CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCcc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCcccHHHHHHHHHHH
Confidence 6666666777666666655110 133455566666666666666666666666531 1233455666666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 419 CKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 186 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 186 YKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666666666665542 224455555555666666666666666665554
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1e-12 Score=129.36 Aligned_cols=202 Identities=13% Similarity=0.035 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++++.. +.+..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------SRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHH
Confidence 5678888889999999999999999998864 4467778888889999999999999999988864 5577888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQK-GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
..+...|...|++++|.+.++++. .. ..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 184 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEAS---QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH---hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 889999999999999999999884 21 233456778888888889999999999998888764 2357778888888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAG 508 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (757)
+...|++++|...++++.+... .+...+..+...+...|+.++|.+.++++.+..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888888888888877543 366777778888888888888888888887763
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=5e-12 Score=126.12 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 410 TYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
++..+...|...|++++|++.|++..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 34 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD 34 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=5.7e-13 Score=128.38 Aligned_cols=204 Identities=13% Similarity=0.003 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+..++..++..|...|++++|.+.|+++.+..+. +..+|..+...|...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4556667777777777777777777777766543 56677777777777777777777777776653 334556666666
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 338 RLCKL-YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 338 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
.+... |++++|...++++++... .+.+...+..++..+...|++++|.+.++++.. ..+.+...+..++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPT-----YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA----AQPQFPPAFKELAR 155 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTT-----CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCchHHHHHHH
Confidence 77777 777777777777765210 133355666666777777777777777766632 12334566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
.+.+.|++++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666666666666665432134555555555556666666666666665543
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1e-13 Score=135.58 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.....+..+...+.+.|++++|...|+++.+..+. +..++..+...|.+.|++++|.+.|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 45567778888888999999999999999887654 78888888889999999999999999888764 34567778888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
..+...|++++|.+.++++++.. +.+...+..++..+.+.|++++|.+.++++.. ..+.+...+..+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE----LNENDTEARFQFGM 167 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCccHHHHHHHHH
Confidence 88888889999999888888764 55677888888888888888888888888742 23456777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYT 482 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 482 (757)
.+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +..++.
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 231 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALH 231 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHH
Confidence 8888888888888888877763 235667777777888888888888888877775433 444443
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=8.9e-14 Score=138.93 Aligned_cols=221 Identities=10% Similarity=-0.051 Sum_probs=121.0
Q ss_pred cCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAP---LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 348 (757)
.|++++|++.|+++.+.... .+..+|..++..+...|++++|.+.|+++.+.+ +.+..+|..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35666666666666654321 134556666666666666666666666666653 33455566666666666666666
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGL 428 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 428 (757)
++.|+++++.. +.+..++..++..|.+.|++++|.+.++++... .|+.......+..+...|++++|.
T Consensus 97 ~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 97 YEAFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcC-------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHhcCHHHHH
Confidence 66666666543 334556666666666666666666666665421 222222333333444556666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 429 ELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA---NAVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
..+.+..... +++...+ .++..+...++.++|...+.++.+..... +..++..+...|.+.|++++|...|+++.
T Consensus 165 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 165 EVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6665555442 2222222 24445555555566666665554432110 13455555556666666666666666655
Q ss_pred Hc
Q 048807 506 RA 507 (757)
Q Consensus 506 ~~ 507 (757)
+.
T Consensus 243 ~~ 244 (275)
T 1xnf_A 243 AN 244 (275)
T ss_dssp TT
T ss_pred hC
Confidence 54
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1.7e-13 Score=133.94 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++++.. +.+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------SSAATA 93 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CcchHH
Confidence 45667777777778888888888888887754 3456667777777778888888888888877654 456677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
+..+...|...|++++|.+.++++.. ..+.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALR----AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 77777778888888888888777642 224456677777777777777777777777777653 2256666777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
+.+.|++++|...++++.+... .+..++..+...|.+.|++++|...++++.+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777777666533 25566666677777777777777777766665
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=9.7e-13 Score=126.75 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...|..++..+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++++.. +.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------PDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChHH
Confidence 45677777777788888888888888777754 3345667777777777788888888887777653 446667
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 373 FNTLIDGLCKV-GKQEEALGLIEQMRLRLQK-GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 373 ~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
+..++..|... |++++|...++++. .. ..+.+...+..+...+...|++++|++.++++.+... .+...+..+.
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 154 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKAL---ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELA 154 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHH---TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH---cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHH
Confidence 77777777777 77777777777774 21 1222356677777777777777777777777766532 2456666677
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
..+...|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777777777666543135555666666666677777777666666544
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.3e-13 Score=137.73 Aligned_cols=153 Identities=10% Similarity=0.002 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
..+..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+
T Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~ 187 (275)
T 1xnf_A 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFY 187 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHH
Confidence 344444444444444444444444444432 121122222222333445555555554444321 1122222 233344
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPN-----TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
...++.++|...+++..+ ..|+ ...+..++..|.+.|++++|...|+++... .|+. +.....++...|
T Consensus 188 ~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~ 260 (275)
T 1xnf_A 188 LGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELS 260 (275)
T ss_dssp TTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHH
Confidence 444445555555544433 1111 244555566666666666666666666553 2321 122233445555
Q ss_pred CHHHHHHHH
Q 048807 704 MLDKAFKLM 712 (757)
Q Consensus 704 ~~~~A~~~~ 712 (757)
++++|++.+
T Consensus 261 ~~~~a~~~~ 269 (275)
T 1xnf_A 261 LLGQDQDDL 269 (275)
T ss_dssp HHHHC----
T ss_pred HHHhhHHHH
Confidence 566655544
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=4.8e-13 Score=142.00 Aligned_cols=303 Identities=15% Similarity=0.116 Sum_probs=164.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-
Q 048807 406 PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN----VVTLNTLVDGMCRHGRINSAVEFFQEVTRK----GLCA- 476 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~- 476 (757)
.....+......+...|++++|...|+++.+.+.. + ..++..+...+...|++++|...++++.+. +..+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44555666677777777777777777777765322 2 245666666777777777777777665442 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 477 NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCS-ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLI 555 (757)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 555 (757)
...++..+...|...|++++|...+++..+.... .+.. ....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-------------------------------chHHHHHHHH
Confidence 1334555566666666666666666665543100 0100 0022344444
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 556 SGFCKKKM--------------------LDKAYEVLQEMEDI----GM-TPNSVTYNTLISFLSKSGNFSAARRVLKKMV 610 (757)
Q Consensus 556 ~~~~~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (757)
..|...|+ +++|...+++..+. +. +....++..+...|...|++++|...+++.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444 55555555443321 10 1112345556666666666666666666655
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 611 KEGL-VPT----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 611 ~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
+... .++ ..++..+...|...|++++|...+++..+...-.++ ..++..++..|.+.|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 011 235566666677777777777777665431110111 3456667777777777777777777765
Q ss_pred hCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCH
Q 048807 682 VKEV-RPN----TNTYNAMFKGLRQKNMLDKAFKLMDRMIEH----ACHPD-YISMEILTEWLSEAGQT 740 (757)
Q Consensus 682 ~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~ 740 (757)
+... .++ ..++..+..++...|++++|.+++++.++. +..+. ..++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 4200 111 345666777777777777777777776542 11111 24555666666665543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=5.9e-13 Score=141.70 Aligned_cols=275 Identities=15% Similarity=0.136 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCH
Q 048807 443 VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA----VTYTILITAFCNVNNFQEAIKWFDDMSRA----G-CSADS 513 (757)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~ 513 (757)
...+..+...+...|++++|...|+++++.... +. .++..+...|...|++++|...+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556777888889999999999988887433 33 46778888888899999999988887653 1 12234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 048807 514 VVYFTLISGLCQAGRMNDASLVVSKLKEA----GF-RPDIVCYNHLISGFCKKKM-----------------LDKAYEVL 571 (757)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 571 (757)
.++..+...|...|++++|...+++..+. +. .....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56777788888888888888888876653 11 1123467777778888888 78888877
Q ss_pred HHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 572 QEMEDI----GM-TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PT----VVTYGALIHAFCVNGHVDEAMKIF 641 (757)
Q Consensus 572 ~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~ 641 (757)
++..+. +. +....++..+...|...|++++|...+++.++.... ++ ...+..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776542 11 112246667777778888888888888777653110 11 225667777777788888888888
Q ss_pred HHhhhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 642 KELSSSSNVSPN----TVIYNILIDSLCKNNQVELALSLMEEMKVK----EVRP-NTNTYNAMFKGLRQKNMLDKAFKLM 712 (757)
Q Consensus 642 ~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (757)
++..+...-..+ ..++..+...|...|++++|...+++.... +..+ ...++..+..+|.+.|++++|.+++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 777662211111 345667777777788888888887777642 1000 1235666777777778888888888
Q ss_pred HHHHHc
Q 048807 713 DRMIEH 718 (757)
Q Consensus 713 ~~~~~~ 718 (757)
+++++.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=9.7e-13 Score=139.57 Aligned_cols=248 Identities=13% Similarity=0.086 Sum_probs=164.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE----AASCNALLNALGREGDFKRMNQLFTEMKEN----DIEP 327 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 327 (757)
......+..+...+.+.|++++|...|+++.+.++. + ..+|..+...|...|++++|...|+++... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445667778889999999999999999999987644 4 367889999999999999999999987643 2122
Q ss_pred -ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC--------------------H
Q 048807 328 -SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK--------------------Q 386 (757)
Q Consensus 328 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~ 386 (757)
...++..+...+...|++++|...++++++...... .......++..+...|...|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 245678888899999999999999999876420000 001124478888899999999 8
Q ss_pred HHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCh
Q 048807 387 EEALGLIEQMRLRLQKG--CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV-TPN----VVTLNTLVDGMCRHGRI 459 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~ 459 (757)
++|.+.+++........ .+....++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 88888887764221111 111234667777777777888877777777664310 011 22555666666666666
Q ss_pred HHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 460 NSAVEFFQEVTRKGLC-AN----AVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
++|...+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 6666666665542100 01 3344555555555555555555555544
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=6.5e-13 Score=141.37 Aligned_cols=281 Identities=12% Similarity=0.036 Sum_probs=160.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-C
Q 048807 370 VIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNA----VTYNCLINGFCKSGNIEKGLELFHLMKQE----GV-T 440 (757)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 440 (757)
...+..+...+...|++++|...|+++... .+.+. ..|..+...|...|++++|++.+++..+. +. .
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 344445566666667777777766666421 12222 35566666666666666666666665542 10 1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHH
Q 048807 441 PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG-----LCANAVTYTILITAFCNVNN----------FQEAIKWFDDMS 505 (757)
Q Consensus 441 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~ 505 (757)
....++..+...|...|++++|...++++.+.. ......++..+...|...|+ .++|...
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~----- 198 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA----- 198 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-----
Confidence 122344555555555555555555555544320 00112233444444444444 0000000
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 048807 506 RAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA----GFR-PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM- 579 (757)
Q Consensus 506 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 579 (757)
+++|...+++..+. +.. ....++..+...|...|++++|...+++..+...
T Consensus 199 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 199 -----------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 44444444443321 111 1223566677777777777777777777654310
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 048807 580 TPN----SVTYNTLISFLSKSGNFSAARRVLKKMVKEGL--V---PTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV 650 (757)
Q Consensus 580 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 650 (757)
..+ ..++..+...|...|++++|...+++.++... . ....++..+...|...|++++|...+++..+...-
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011 23667777888888888888888887765311 0 11456777888888889999998888877652111
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 651 SPN----TVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 651 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
..+ ..++..+...|.+.|++++|...|++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 34677888999999999999999999886
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=2e-12 Score=133.01 Aligned_cols=243 Identities=14% Similarity=0.106 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-ccch
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE----AASCNALLNALGREGDFKRMNQLFTEMKEN----DIEP-SVVT 331 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 331 (757)
.+......+.+.|++++|+..|+++.+.++. + ...+..+...|...|++++|.+.+++..+. +..| ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4555678889999999999999999987644 4 467889999999999999999999987653 2111 2556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC--------------------HHHHHH
Q 048807 332 FGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK--------------------QEEALG 391 (757)
Q Consensus 332 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~ 391 (757)
+..+...+...|++++|...+++.++...... .......++..+...|...|+ +++|.+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 78888899999999999999999876420000 001114478888899999999 888888
Q ss_pred HHHHHHHhhcC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHH
Q 048807 392 LIEQMRLRLQK-G-CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV-TPN----VVTLNTLVDGMCRHGRINSAVE 464 (757)
Q Consensus 392 ~~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~ 464 (757)
.+++....... + .+....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88775321111 1 111234667777777777888888777777654310 001 2245556666666666666666
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 465 FFQEVTRKGLC-AN----AVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 465 ~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
.+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66655432100 01 2344445555555555555555555543
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.7e-12 Score=133.41 Aligned_cols=276 Identities=16% Similarity=0.131 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CCHHH
Q 048807 410 TYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN----VVTLNTLVDGMCRHGRINSAVEFFQEVTRK----GLC-ANAVT 480 (757)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~ 480 (757)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.++++.+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444455556666666666666666554211 2 234555555555666666666655554432 100 11233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMSRAGC-SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
+..+...|...|++++|...+++..+... .++.. ....++..+...|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHH
Confidence 44444445555555555555544433200 00100 00123444444455
Q ss_pred hcCC--------------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048807 560 KKKM--------------------LDKAYEVLQEMEDI----GM-TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL 614 (757)
Q Consensus 560 ~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 614 (757)
..|+ +++|.+.+++..+. +. +....++..+...|...|++++|...+++..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 55555555443321 10 11123455566666666777777766666553200
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 048807 615 -VPT----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TVIYNILIDSLCKNNQVELALSLMEEMKVK-- 683 (757)
Q Consensus 615 -~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 683 (757)
.++ ..++..+...+...|++++|...+++..+.....++ ..++..+...|...|++++|...++++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 011 225556666666667777776666665431110111 335566666677777777777777666531
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 684 --EVRP-NTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 684 --g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+..+ ...++..+..++.+.|++++|.++++++++
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0000 123555666667777777777777777665
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=3.4e-11 Score=122.36 Aligned_cols=219 Identities=9% Similarity=0.076 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 276 DEAWDVLHVLMKFDAPLEAASCNALLNALGR-------EGDF-------KRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
++|..+|+++++..+. ++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5777788888776543 67778777777653 3554 6666666666652112233456666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVI-IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC- 419 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~- 419 (757)
.|++++|.++|+++++.. +.+.. +|..++..+.+.|++++|..+|++.. ...+.+...|...+....
T Consensus 112 ~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR----EDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH----TSTTCCTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHH
Confidence 666666666666666532 22222 56666666666666666666666653 112233334433332222
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHH
Q 048807 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG-LCA--NAVTYTILITAFCNVNNFQE 496 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~ 496 (757)
..|+.++|.++|++..+.. +-+...|..++..+.+.|++++|..+|+++++.. .+| ....|..++..+.+.|+.++
T Consensus 181 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1456666666666555542 1244555555555555566666666666655542 222 34455555555555566666
Q ss_pred HHHHHHHHHHc
Q 048807 497 AIKWFDDMSRA 507 (757)
Q Consensus 497 A~~~~~~m~~~ 507 (757)
|..+++++.+.
T Consensus 260 a~~~~~~a~~~ 270 (308)
T 2ond_A 260 ILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555555544
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=7.9e-12 Score=116.29 Aligned_cols=167 Identities=12% Similarity=0.047 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+..+|..+...|.+.|++++|++.|+++++.++. +..+|..+...|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5667778888888888888888888888877654 67788888888888888888888888877664 334556666667
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
.+...++++.|.+.+.++.+.. +.+..++..+...|.+.|++++|++.|++... -.+.+..+|..+..+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS----IKPGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH----hcchhhhHHHHHHHH
Confidence 7777788888888888777654 55667777777778888888888887777642 234566777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 048807 418 FCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~ 437 (757)
|.+.|++++|++.|++.++.
T Consensus 151 ~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhC
Confidence 77777777777777777764
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=7.6e-11 Score=119.78 Aligned_cols=219 Identities=12% Similarity=0.124 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLC-------QAGRM-------NDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
++|..+|++++... +.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776653 456667776666654 34775 7888888888873122356678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSV-TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFC-VNGHVDEAM 638 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~ 638 (757)
.|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888763 22333 78888888888888999999998888754 234445544433322 368999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 639 KIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE-VRP--NTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 639 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.+|++..+. .+.+...|..++..+.+.|++++|..+|++.+... ++| ....|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888772 23466788888888888999999999999988852 344 4567888888888889999999999988
Q ss_pred HHc
Q 048807 716 IEH 718 (757)
Q Consensus 716 ~~~ 718 (757)
++.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=6.6e-12 Score=132.16 Aligned_cols=231 Identities=10% Similarity=0.077 Sum_probs=147.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-----CHHHHH
Q 048807 484 LITAFCNVNNFQEAIKWFDDMSRA----GCSA-DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR-P-----DIVCYN 552 (757)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-----~~~~~~ 552 (757)
....+...|++++|+..|++..+. +.++ ...++..+...|...|++++|...+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777666542 1011 2345666666677777777777766665542100 1 134667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGM-TPN----SVTYNTLISFLSKSGNFSAARRVLKKMVKE----GL-VPTVVTYG 622 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 622 (757)
.+...|...|++++|.+.|++..+... .++ ..++..+...|...|++++|...+++.++. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777788888888888888877664310 011 136777888888888888888888887762 22 22356677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSSSNVSPN---TVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPN-TNTYNAM 695 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 695 (757)
.+...|.+.|++++|...+++..+...-..+ ...+..+...|...|+ +++|+.++++.. ..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 7888888888888888888776552111112 2235667777777887 777777776652 2222 3456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 048807 696 FKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+..|...|++++|.++++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888765
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=1.5e-11 Score=114.45 Aligned_cols=171 Identities=16% Similarity=0.055 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 547 DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626 (757)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (757)
+...|..+...|.+.|++++|.+.|++.++.. |.+..++..+...|.+.|++++|...+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 55667777778888888888888888877765 5567777777888888888888888888777653 235666667777
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 627 AFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLD 706 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 706 (757)
.+...++++.|...+.+..+. .+.+...+..++..|.+.|++++|++.|++..+.. +.+..+|..++.+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 777888888888888877762 23456677788888888888888888888887642 345677788888888888888
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 048807 707 KAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 707 ~A~~~~~~~~~~g~~p~~ 724 (757)
+|++.|+++++ +.|+.
T Consensus 159 ~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHHh--CCccC
Confidence 88888888876 35554
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.1e-11 Score=130.38 Aligned_cols=297 Identities=8% Similarity=-0.031 Sum_probs=213.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHH--HHHcCCHHHHH-----------HHHHHHHhCCCCCCHH
Q 048807 380 LCKVGKQEEALGLIEQMRLRLQKGC--MPNAVTYNCLING--FCKSGNIEKGL-----------ELFHLMKQEGVTPNVV 444 (757)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~ 444 (757)
+.+.+++++|..+++++... .... .++...|..++.. ....++++.+. +.++.+.... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~-~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQE-LDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 45689999999999998654 2333 2334444444432 22234444444 6666665421 1111
Q ss_pred ------HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C--
Q 048807 445 ------TLNTLVDGMCRHGRINSAVEFFQEVTRK----GLCA-NAVTYTILITAFCNVNNFQEAIKWFDDMSRAG--C-- 509 (757)
Q Consensus 445 ------~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-- 509 (757)
.+......+...|++++|...++++.+. +..+ ...++..+...|...|++++|+..+++..+.- .
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1223667788999999999999999874 1111 34678889999999999999999999887631 1
Q ss_pred --CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 048807 510 --SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR-PD----IVCYNHLISGFCKKKMLDKAYEVLQEMEDI----G 578 (757)
Q Consensus 510 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~ 578 (757)
+....+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 112357888999999999999999999887754111 12 247888999999999999999999998872 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhcCCC
Q 048807 579 M-TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE----GLVPTVVTYGALIHAFCVNGH---VDEAMKIFKELSSSSNV 650 (757)
Q Consensus 579 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~ 650 (757)
. +....++..+...|.+.|++++|...+++.++. +-+.....+..+...|...|+ +++|+.++++... .
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---Y 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---H
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---H
Confidence 2 334678899999999999999999999998763 111122335667788888998 7888888876522 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 651 SPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+.....+..+...|.+.|++++|...|++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234678899999999999999999999875
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=9.7e-12 Score=134.40 Aligned_cols=193 Identities=12% Similarity=0.017 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 547 DIVCYNHLISGFCKKKML-DKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625 (757)
Q Consensus 547 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (757)
+...+..+...|...|++ ++|.+.|++.++.. +.+...|..+...|.+.|++++|...|++.++. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344444555555555555 55555555554443 333445555555555555555555555555543 24444455555
Q ss_pred HHHHhc---------CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--
Q 048807 626 HAFCVN---------GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN--------NQVELALSLMEEMKVKEVR-- 686 (757)
Q Consensus 626 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~-- 686 (757)
..|... |++++|+..+++..+. .+.+...|..++.+|... |++++|+..|++..+.. +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCc
Confidence 555555 5555555555555441 122344455555555555 55555555555555421 1
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 687 -PNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHP-DYISMEILTEWLSEAGQTEKLKKFV 747 (757)
Q Consensus 687 -p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 747 (757)
.+...|..++.+|...|++++|.+.|+++++. .| +...+..+...+...|+.++|.+.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24445555555555555555555555555543 23 2244445555555555555555443
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=4.8e-12 Score=136.82 Aligned_cols=216 Identities=9% Similarity=-0.003 Sum_probs=177.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHH
Q 048807 274 KTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDF-KRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVF 352 (757)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 352 (757)
.+++|++.++......+ .+...|..+...|...|++ ++|.+.|++.++.. +.+...|..+...|.+.|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677777777766543 4788899999999999999 99999999998875 445778899999999999999999999
Q ss_pred HHHHhCCCCCcccccCCHhHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc--
Q 048807 353 EKMIAGKETAEISVEPDVIIFNTLIDGLCKV---------GKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS-- 421 (757)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 421 (757)
+++++. .|+..++..+...|... |++++|++.+++... -.+.+...|..+..+|...
T Consensus 161 ~~al~~--------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 161 SGALTH--------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----MDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHHTT--------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhh--------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHH
Confidence 999885 46678889999999998 999999999999852 2456788999999999988
Q ss_pred ------CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 422 ------GNIEKGLELFHLMKQEGVT--PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 422 ------g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
|++++|++.|++..+.... -+...|..+...|...|++++|.+.|+++.+.... +...+..+...+...|+
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 8899999999999886320 37788888999999999999999999998887543 66778888888888888
Q ss_pred HHHHHHHHHHH
Q 048807 494 FQEAIKWFDDM 504 (757)
Q Consensus 494 ~~~A~~~~~~m 504 (757)
+++|++.+.++
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 88888766544
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=132.92 Aligned_cols=250 Identities=14% Similarity=0.068 Sum_probs=165.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF-------DAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN----- 323 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 323 (757)
+.+..++..+...|...|++++|..+|+++.+. +.+....++..+...|...|++++|...|+++++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445678899999999999999999999999873 23335678999999999999999999999998864
Q ss_pred -CC-CCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 048807 324 -DI-EPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETA-EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 324 -g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 400 (757)
+- +....++..+...|...|++++|.+.++++++..... ....+....++..+...|...|++++|.+.++++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 2235678888999999999999999999988641000 00013345678889999999999999999999886321
Q ss_pred cCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHHHcCChHHH
Q 048807 401 QKG----CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE-------GVTPNV-------VTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 401 ~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-------~~~~~li~~~~~~g~~~~A 462 (757)
... .+....++..+...|...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 111 2233567888999999999999999999988863 111111 1112222223333444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 463 VEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
...+....... +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44454444321 12344556666666666666666666666554
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=5.9e-12 Score=128.05 Aligned_cols=175 Identities=15% Similarity=0.086 Sum_probs=123.8
Q ss_pred cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----
Q 048807 367 EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK----GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE----- 437 (757)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 437 (757)
+.+..++..+...|...|++++|..+++++...... ..+....++..+...|...|++++|.+.++++.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445677888999999999999999999887532111 22334667888888999999999999998888764
Q ss_pred -CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 048807 438 -GV-TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK------GL-CANAVTYTILITAFCNVNNFQEAIKWFDDMSRA- 507 (757)
Q Consensus 438 -g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 507 (757)
+. +....++..+...|...|++++|...++++.+. +. +....++..+...|...|++++|+..++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 223456777888888888888888888887764 11 223456677777888888888888888777654
Q ss_pred -----C-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048807 508 -----G-CSADSVVYFTLISGLCQAGRMNDASLVVSKLKE 541 (757)
Q Consensus 508 -----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (757)
+ .+....++..+...+...|++++|...++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122234566677777777777777777777664
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=2e-10 Score=120.54 Aligned_cols=230 Identities=11% Similarity=0.090 Sum_probs=149.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CC-CHHHHH
Q 048807 484 LITAFCNVNNFQEAIKWFDDMSRAGC-SA----DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGF-----RP-DIVCYN 552 (757)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-----~~-~~~~~~ 552 (757)
....+...|++++|+..|++..+... .+ ...++..+...|...|++++|...+++..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455667777777777777654310 11 234566677777777777777777776554210 11 134667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDI----GMTP-NSVTYNTLISFLSKSGNFSAARRVLKKMVK-----EGLVPTVVTYG 622 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 622 (757)
.+...|...|++++|.+.|++..+. +.++ ...++..+...|...|++++|...+++.++ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7778888888888888888776643 1111 124667778888888888888888888776 32 22356777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCC--C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSSSNVS--P-NTVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPN-TNTYNAM 695 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 695 (757)
.+...|.+.|++++|...+++..+...-. + ....+..+...|...|+ +++|+..+++.. ..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 78888888888888888888776632211 2 23345666666777777 777777776632 1222 3456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 048807 696 FKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+..|...|++++|.++++++++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888764
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=1.8e-10 Score=120.93 Aligned_cols=312 Identities=10% Similarity=-0.014 Sum_probs=218.6
Q ss_pred ccCCHhHHHHHHHHH--HHcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHH--HHcCCHHHHH---------HH
Q 048807 366 VEPDVIIFNTLIDGL--CKVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGF--CKSGNIEKGL---------EL 430 (757)
Q Consensus 366 ~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~--~~~g~~~~A~---------~~ 430 (757)
..|...+-+.|-.+| ...+++++|.++++++... ......| ...|..++..- .-.+..+.+. +.
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~-~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQD-IQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-GGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 346666777777787 7899999999999998643 2222223 44445444421 1112222222 55
Q ss_pred HHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 431 FHLMKQEGVTPN----VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC-A----NAVTYTILITAFCNVNNFQEAIKWF 501 (757)
Q Consensus 431 ~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~ 501 (757)
++.+.....+.+ ...+......+...|++++|...|+++.+.... + ...++..+...|...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 555543211101 112334556678899999999999998865211 2 2457888999999999999999999
Q ss_pred HHHHHcC--C---C-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 502 DDMSRAG--C---S-ADSVVYFTLISGLCQAGRMNDASLVVSKLKEA----GFRP-DIVCYNHLISGFCKKKMLDKAYEV 570 (757)
Q Consensus 502 ~~m~~~~--~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 570 (757)
++..+.. . . ....+++.+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9877531 1 1 12457788999999999999999999887653 1111 234788899999999999999999
Q ss_pred HHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHhcCC---HHHHH
Q 048807 571 LQEMED-----IGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL---VP-TVVTYGALIHAFCVNGH---VDEAM 638 (757)
Q Consensus 571 ~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p-~~~~~~~li~~~~~~g~---~~~A~ 638 (757)
+++..+ .. +....++..+...|.+.|++++|...+++..+... .+ ....+..+...|...|+ +.+|+
T Consensus 245 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 245 FQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999887 43 33467888999999999999999999999887421 12 23456666667777888 88888
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 639 KIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 639 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
..+++... .+.....+..++..|.+.|++++|...|++..+
T Consensus 324 ~~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKKNL---HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCC---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88876322 112234677899999999999999999999875
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=9e-10 Score=115.25 Aligned_cols=277 Identities=14% Similarity=0.045 Sum_probs=177.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCc----cchH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAA----SCNALLNALGREGDFKRMNQLFTEMKENDI-EPS----VVTF 332 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~ 332 (757)
...+...+...|++++|...+++.....+..+.. +++.+...+...|++++|.+.+++...... .++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445567778999999999999998876443432 567778889999999999999999876310 011 1235
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCccccc--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CCCCCH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVE--P-DVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK-GCMPNA 408 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 408 (757)
..+...+...|++++|...+++.++..... +.+ | ...++..+...+...|++++|...+++....... +.+...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQ--HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 667788899999999999999987632100 011 2 3456777888999999999999999987532111 111124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHH
Q 048807 409 VTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN-VVTLN-----TLVDGMCRHGRINSAVEFFQEVTRKGLCA---NAV 479 (757)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 479 (757)
.++..+...+...|++++|.+.+++.......++ ...+. ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 5677888888899999999999888765321111 11111 23344667888888888877766543211 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRA----GCSADS-VVYFTLISGLCQAGRMNDASLVVSKLK 540 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 540 (757)
.+..+...+...|++++|...+++.... |..++. ..+..+...+...|+.++|...+++..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666777777777777777665432 111111 133334444555555555555554443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1.2e-09 Score=114.18 Aligned_cols=273 Identities=11% Similarity=0.008 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHH
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQEGVTPNVV----TLNTLVDGMCRHGRINSAVEFFQEVTRKGLC-ANA----VTYTI 483 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 483 (757)
.....+...|++++|...+++........+.. ++..+...+...|++++|.+.+++..+.... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444555666666666666655542111111 3344445555555555555555554432100 011 12233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHh
Q 048807 484 LITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR--P-DIVCYNHLISGFCK 560 (757)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~-~~~~~~~li~~~~~ 560 (757)
+...+...|++++|...+++..+.. .+.+.. | ....+..+...+..
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhccccCcHHHHHHHHHHHHHHH
Confidence 4444444555555555554443310 000111 1 12234445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHh
Q 048807 561 KKMLDKAYEVLQEMEDIGMT----PNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP--TVVTYG----ALIHAFCV 630 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~----~li~~~~~ 630 (757)
.|++++|...+++..+.... ....++..+...+...|++++|...+++.......+ ...... ..+..+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 55555555555555432110 012345555555666666666666666554321011 111111 12233556
Q ss_pred cCCHHHHHHHHHHhhhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHHc
Q 048807 631 NGHVDEAMKIFKELSSSSNVSP---NTVIYNILIDSLCKNNQVELALSLMEEMKV----KEVRPNT-NTYNAMFKGLRQK 702 (757)
Q Consensus 631 ~g~~~~A~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~l~~~~~~~ 702 (757)
.|++++|...+++.... ...+ ....+..+...+...|++++|...+++... .|..++. ..+..+..++...
T Consensus 228 ~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp TTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 66666666666665441 1111 122345556666666666666666666543 1111112 2444555666666
Q ss_pred CCHHHHHHHHHHHHH
Q 048807 703 NMLDKAFKLMDRMIE 717 (757)
Q Consensus 703 g~~~~A~~~~~~~~~ 717 (757)
|+.++|...+++.++
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777766666653
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=1.4e-10 Score=107.54 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL 339 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 339 (757)
..+..++..+...|++++|.+.|+++.+..+. +..++..++..+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 35666777778888888888888887766543 67777778888888888888888888877663 33556677777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 048807 340 CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (757)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.. ..+.+...+..++..+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-------PINFNVRFRLGVALDNLGRFDEAIDSFKIALG----LRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----cCccchHHHHHHHHHHH
Confidence 77788888888887777653 45666777777777777777777777777642 12445667777777777
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 048807 420 KSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~ 437 (757)
..|++++|.+.++++.+.
T Consensus 156 ~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 156 QMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 777777777777776654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=5.1e-11 Score=133.86 Aligned_cols=168 Identities=14% Similarity=0.048 Sum_probs=150.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
|.+..+++.|...|.+.|++++|++.|+++++..+. +..+|+.+..+|.+.|++++|++.|++.++.+ +-+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 446778999999999999999999999999998765 78999999999999999999999999999875 4457889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
...|.+.|++++|++.|+++++.+ +.+..+|+.+...|.+.|++++|++.|++... -.+.+...|..+.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~----l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-------PAFADAHSNLASIHKDSGNIPEAIASYRTALK----LKPDFPDAYCNLA 152 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHhhhh
Confidence 999999999999999999999875 56788999999999999999999999999852 2356788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 048807 416 NGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (757)
..|...|++++|.+.++++.+
T Consensus 153 ~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 153 HCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHTTCCTTHHHHHHHHHH
T ss_pred hHHHhcccHHHHHHHHHHHHH
Confidence 999999999999998888765
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=4.1e-10 Score=108.65 Aligned_cols=209 Identities=9% Similarity=0.010 Sum_probs=164.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.|+..+..+...|.+.|++++|++.|+++.+..++++...+..+...+.+.|++++|.+.|++.++.+ +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888999999999999999999999998875688888889999999999999999999999875 44677889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--C
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDV-------IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--N 407 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~ 407 (757)
..|...|++++|++.+++.++.. +.+. .+|..+...+...|++++|++.|++.. ...+. +
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al----~~~p~~~~ 152 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT----DVTSKKWK 152 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT----TSSCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH----hcCCCccc
Confidence 99999999999999999999864 4445 568888999999999999999999983 33344 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 408 AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILIT 486 (757)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 486 (757)
...|..+...|...| ...++++...+. .+...|.... ....+.+++|...+++..+..+. +..+...+..
T Consensus 153 ~~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 153 TDALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 678888888886654 344566655532 2444454443 33457789999999999987543 5555544433
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=3.6e-10 Score=104.63 Aligned_cols=164 Identities=14% Similarity=0.087 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHH
Q 048807 295 ASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFN 374 (757)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (757)
..|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-------PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHH
Confidence 345555556666666666666666655542 2344455555555666666666666666655542 33455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMC 454 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (757)
.++..+...|++++|.+.++++.. ..+.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAE----ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHH
Confidence 555566666666666666655531 123344555555555555555555555555555442 123444445555555
Q ss_pred HcCChHHHHHHHHHHHH
Q 048807 455 RHGRINSAVEFFQEVTR 471 (757)
Q Consensus 455 ~~g~~~~A~~~~~~~~~ 471 (757)
..|++++|...++++.+
T Consensus 156 ~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 156 QMGRHEEALPHFKKANE 172 (186)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555544443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=3.3e-10 Score=127.27 Aligned_cols=169 Identities=15% Similarity=0.079 Sum_probs=150.3
Q ss_pred ccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 366 VEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVT 445 (757)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (757)
.|.+..+++.|...|.+.|++++|++.|++... -.+.+..+|+.+..+|.+.|++++|++.|++.++.... +..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a 79 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADA 79 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 466788999999999999999999999999852 23567899999999999999999999999999987433 6789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048807 446 LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ 525 (757)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 525 (757)
|..+...|.+.|++++|++.|+++++.... +..+|+.+...|.+.|++++|++.|++.++.. +.+...+..+...+..
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 999999999999999999999999987544 78899999999999999999999999999875 5578899999999999
Q ss_pred cCChhHHHHHHHHHHH
Q 048807 526 AGRMNDASLVVSKLKE 541 (757)
Q Consensus 526 ~g~~~~A~~~~~~~~~ 541 (757)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998888765
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.3e-09 Score=105.16 Aligned_cols=200 Identities=13% Similarity=0.024 Sum_probs=154.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 511 ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLI 590 (757)
Q Consensus 511 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 590 (757)
.|+..+......+...|++++|...|++..+....++...+..+..++...|++++|...|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46778888899999999999999999999887654677777779999999999999999999999875 44667888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---HHHHHHH
Q 048807 591 SFLSKSGNFSAARRVLKKMVKEGLVPTV-------VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN---TVIYNIL 660 (757)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l 660 (757)
..|...|++++|+..+++.++.. +.+. ..|..+...+...|++++|+..|++..+ ..|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999998853 2244 4577788888899999999999999887 3455 4577778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048807 661 IDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 661 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 725 (757)
..+|...| ...++++...+ ..+...|.... ....|.+++|+..+++.++. .|+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 88876544 44556665543 33445554433 34556789999999999974 56553
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=2.4e-10 Score=114.11 Aligned_cols=230 Identities=12% Similarity=0.063 Sum_probs=146.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc------C--C-CcchHHHHHHHHHhcCChhhHH
Q 048807 131 SLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNN------L--R-NTHVRNVLIDVLLRCDHDRDAF 201 (757)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~--~-~~~~~~~l~~~~~~~g~~~~A~ 201 (757)
+|++++..+.....|....++..+..+|...|++++|+..|+++... . + ...+++.++.+|...|++++|+
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 34444444443343556678899999999999999999999887642 1 1 2357899999999999999999
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 202 NVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDV 281 (757)
Q Consensus 202 ~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 281 (757)
+.|+++... ..... ....+....++..+...|...|++++|++.
T Consensus 106 ~~~~~al~~--------------~~~~~----------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 149 (283)
T 3edt_B 106 PLCKRALEI--------------REKVL----------------------GKFHPDVAKQLNNLALLCQNQGKAEEVEYY 149 (283)
T ss_dssp HHHHHHHHH--------------HHHHH----------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHH--------------HHHHc----------------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999998652 00000 001122356788899999999999999999
Q ss_pred HHHHHhC------C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCccc-hHHHHHHHHHhcCChh
Q 048807 282 LHVLMKF------D-APLEAASCNALLNALGREGDFKRMNQLFTEMKEN-------DIEPSVV-TFGTIINRLCKLYRAD 346 (757)
Q Consensus 282 ~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-~~~~li~~~~~~g~~~ 346 (757)
|+++.+. + .+....++..+...|.+.|++++|.+.|+++.+. ...+... .|..+...+...+...
T Consensus 150 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (283)
T 3edt_B 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229 (283)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh
Confidence 9999875 1 1124578889999999999999999999998763 1223333 3333333333322222
Q ss_pred HHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 347 EALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
.+.. +..+...-.......+....++..+...|.+.|++++|..++++..
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 230 DSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp C-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222 2111110000000013334567777777777777777777777663
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=2.3e-10 Score=114.17 Aligned_cols=235 Identities=14% Similarity=0.052 Sum_probs=143.2
Q ss_pred HcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-ccchHHHHH
Q 048807 271 RKGKTDEAWDVLHVLMK-------FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN------DIEP-SVVTFGTII 336 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li 336 (757)
..|++++|+..|++..+ .+.+....++..+...|...|++++|...|+++++. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555444 222334667888888888888888888888888754 2122 355678888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCc-ccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC----CCCCCHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAE-ISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK----GCMPNAVTY 411 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~ 411 (757)
..|...|++++|++.++++++...... ...+....++..+...|...|++++|.+.++++...... ..+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 889999999999999998876410000 001334678889999999999999999999988532111 122345678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHH------HHHHHHHCCCCCC
Q 048807 412 NCLINGFCKSGNIEKGLELFHLMKQE-------GVTPN-VVTLNTLVDGMCRHGRINSAVE------FFQEVTRKGLCAN 477 (757)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-~~~~~~li~~~~~~g~~~~A~~------~~~~~~~~~~~~~ 477 (757)
..+...|...|++++|.+.++++.+. ...+. ...+..+...+...+....+.. .+..... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88999999999999999999888763 11222 2233333333333222222211 1111110 01112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
..++..+...|...|++++|...|++.++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666666666666666666553
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=6.5e-09 Score=104.40 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=42.1
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------
Q 048807 551 YNHLISGFCKK-KMLDKAYEVLQEMEDIGMT-PN----SVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV------ 618 (757)
Q Consensus 551 ~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------ 618 (757)
++.+..+|... |++++|...|++..+.... .+ ..++..+...|.+.|++++|+..|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44444555553 5555555555554432100 00 123444455555555555555555555543211111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..+..+..++...|++++|...|++..+
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1233444444445555555555544433
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=1.2e-07 Score=102.21 Aligned_cols=379 Identities=11% Similarity=0.025 Sum_probs=211.7
Q ss_pred HcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC-hhHH
Q 048807 271 RKG-KTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR-ADEA 348 (757)
Q Consensus 271 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A 348 (757)
+.| +++.|..+|++++..- |. |+++.+.++|++.+.. .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 3777777777776542 12 7788888888888874 4677788877776666653 3556
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHH----HcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHcC
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLC----KVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGFCKSG 422 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 422 (757)
..+|+.++..-. .-+.+...|...+..+. ..|+.+.+.++|++.. . .++. ...|...... .+..
T Consensus 68 ~~~fe~al~~vg----~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL---~--~P~~~~~~lw~~Y~~f-E~~~ 137 (493)
T 2uy1_A 68 YEVYEFTLGQFE----NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRAL---Q--TPMGSLSELWKDFENF-ELEL 137 (493)
T ss_dssp HHHHHHHHHHST----TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH---T--SCCTTHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHcC----CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH---h--ChhhhHHHHHHHHHHH-HHHh
Confidence 777887775310 01345678888777654 3467888999999884 2 2221 1122222111 1111
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HH
Q 048807 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVN--N-----FQ 495 (757)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~ 495 (757)
+...+..++.+.. +.+..|..+++.+...-...+...|...+..-...+ - .+
T Consensus 138 ~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~ 196 (493)
T 2uy1_A 138 NKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHES 196 (493)
T ss_dssp CHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHH
T ss_pred ccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHH
Confidence 1122222221111 122233333333222100012234444443322110 0 23
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 496 EAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 496 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
.+..+|++++... +.+...|...+.-+.+.|+.++|..++++.... +.+...|.. |....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 4556666666542 445666666666666777777777777777666 223222221 2111111111 22221
Q ss_pred hCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 048807 576 DIG---------M---TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG-HVDEAMKIFK 642 (757)
Q Consensus 576 ~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~ 642 (757)
+.- . ......|...+..+.+.++.+.|..+|+++ +. ...+...|...+..-...+ +.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 011245666677777788899999999999 32 1234445543333323333 6999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 643 ELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 643 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
...+..+ .+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 345 ~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9888432 344556777888888999999999999973 3567888888877888999999998988874
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=4.7e-09 Score=105.43 Aligned_cols=217 Identities=12% Similarity=0.000 Sum_probs=136.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCc-cchHHHHHHHHHhcCChhHH
Q 048807 274 KTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN----DIEPS-VVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A 348 (757)
++++|.+.|+++ +..|...|++++|.+.|.+..+. |-+++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777666665 33566777777777777776543 21111 45677888888888888888
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV-GKQEEALGLIEQMRLRLQK-GCMP-NAVTYNCLINGFCKSGNIE 425 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~ 425 (757)
+..+++.++..... .....-..+++.+...|... |++++|+..|++....... +... ...+++.+...+.+.|+++
T Consensus 97 ~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHR-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 88888877532000 00001145778888888886 9999999999887532111 1000 1356788888888888888
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHH--hcCC
Q 048807 426 KGLELFHLMKQEGVTPNV------VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA-N---AVTYTILITAFC--NVNN 493 (757)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~~~~li~~~~--~~g~ 493 (757)
+|++.|++..+....... ..|..+..++...|++++|...|++..+..... + ...+..++..|. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 888888888876433221 146667777888888888888888877642210 1 112333444443 3456
Q ss_pred HHHHHHHHHHHHH
Q 048807 494 FQEAIKWFDDMSR 506 (757)
Q Consensus 494 ~~~A~~~~~~m~~ 506 (757)
+++|+..|+++..
T Consensus 256 ~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 256 LSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTSSC
T ss_pred HHHHHHHhccCCc
Confidence 7777777766544
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=5.6e-08 Score=95.58 Aligned_cols=179 Identities=10% Similarity=0.031 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 497 AIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGF-RPDIVCYNHLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 497 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
|+..|++....+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 33444444555566666666666666666554432 1234455555666666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 576 DIGMTP-----NSVTYNTLISFLS--KSG--NFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 576 ~~~~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
+. .| +..+...|+.++. ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 2334444444422 223 566666666665543 23322323333355566666666666654443
Q ss_pred cC----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 647 SS----N----VSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 647 ~~----~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
.. . -+.|..++..+|......|+ +|.+++.++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 10 0 02233444444444444554 55566666555
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=1e-08 Score=101.14 Aligned_cols=212 Identities=11% Similarity=0.032 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCccc
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE---AASCNALLNALGREGDFKRMNQLFTEMKENDI--EPSVV 330 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~ 330 (757)
+.+...+..+...+.+.|++++|+..|+++.+..+. + ..++..+..+|.+.|++++|...|++.++... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456677888899999999999999999999997654 4 67899999999999999999999999998631 11234
Q ss_pred hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 048807 331 TFGTIINRLCK--------LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK 402 (757)
Q Consensus 331 ~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (757)
.+..+..++.. .|++++|+..|+++++.. +.+......+.. +..+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~--------------~~~~~~---- 145 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-------PNHELVDDATQK--------------IRELRA---- 145 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-------TTCTTHHHHHHH--------------HHHHHH----
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-------cCchhHHHHHHH--------------HHHHHH----
Confidence 56777888888 999999999999999864 333333322211 111100
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc----------CChHHHHHHHHHHH
Q 048807 403 GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP--NVVTLNTLVDGMCRH----------GRINSAVEFFQEVT 470 (757)
Q Consensus 403 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~ 470 (757)
.-...+..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|++++
T Consensus 146 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 146 ---KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 001124455566666666666666666666542111 123455555555544 66666666666666
Q ss_pred HCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 048807 471 RKGLCAN--AVTYTILITAFCNVNNFQE 496 (757)
Q Consensus 471 ~~~~~~~--~~~~~~li~~~~~~g~~~~ 496 (757)
+..+... ..+...+...+.+.+++++
T Consensus 223 ~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 223 QIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 6532211 2233344444444444443
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=5.4e-07 Score=97.01 Aligned_cols=378 Identities=11% Similarity=-0.002 Sum_probs=235.0
Q ss_pred HcC-ChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC
Q 048807 306 REG-DFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG 384 (757)
Q Consensus 306 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 384 (757)
+.| +++.|..+|+.++.. -|. |+++.+..+|++.+.. .|++..|...+....+.+
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~ 61 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVS 61 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhC
Confidence 456 488899999988875 233 7899999999999874 469999999998888777
Q ss_pred C-HHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 385 K-QEEALGLIEQMRLRLQKG-CMPNAVTYNCLINGFC----KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGR 458 (757)
Q Consensus 385 ~-~~~A~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (757)
. .+....+|+.... .-| .+.+...|...+..+. .+|+.+.+.++|++.+......-...|...... .....
T Consensus 62 ~~~~~i~~~fe~al~--~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~ 138 (493)
T 2uy1_A 62 QKKFKLYEVYEFTLG--QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELN 138 (493)
T ss_dssp ----CTHHHHHHHHH--HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHC
T ss_pred chHHHHHHHHHHHHH--HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhc
Confidence 4 4556677777652 223 3456788888887654 356788999999999874211111122222111 11111
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--C-----hhH
Q 048807 459 INSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAG--R-----MND 531 (757)
Q Consensus 459 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~-----~~~ 531 (757)
...+..+..+.. +.+..|..+++++...-...+...|...+.--...+ - .+.
T Consensus 139 ~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 139 KITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred cccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHH
Confidence 222222222211 233444555544432100113345655555433221 1 345
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 532 ASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 532 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... |.+...|. .|+...+.++. ++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHH
Confidence 677899988764 446788988899899999999999999999988 44443333 23332222222 222221
Q ss_pred CC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 048807 612 EG---------LVP---TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN-QVELALSLME 678 (757)
Q Consensus 612 ~~---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~ 678 (757)
.- ..+ ....|...+..+.+.+..+.|..+|++. +..+ .+...|...+..-...+ +.+.|..+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 10 001 1245666666667788899999999998 4222 34445544333333334 6999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 679 EMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 679 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
...+.. +.++..|...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+++.+++.
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 998752 3345667778888889999999999999972 24678888888888889999998877664
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=7.8e-09 Score=97.93 Aligned_cols=162 Identities=9% Similarity=0.017 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNA----------------LLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
.+......+.+.|++++|+..|+++.+.++. +...|.. +...|.+.|++++|...|++.++.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3444566777889999999999998886543 4455555 5555556666666666666555543
Q ss_pred CCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcC
Q 048807 325 IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK--QEEALGLIEQMRLRLQK 402 (757)
Q Consensus 325 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~ 402 (757)
+.+...+..+...+...|++++|+..|+++++.+ |.+..+|..+...|...|+ .+.+...+....
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----- 151 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----- 151 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----
Confidence 2344555555555555666666666666655543 3445555555555544432 222333333321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 403 GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 403 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
...|....+.....++...|++++|+..|++.++
T Consensus 152 ~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0111122233334444445555555555555554
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.02 E-value=4.7e-08 Score=96.13 Aligned_cols=176 Identities=12% Similarity=0.054 Sum_probs=97.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 567 AYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL-VPTVVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 567 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
|...|++..+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665544 34455555666666667777777777776655442 1244555666666777777777777777665
Q ss_pred hcCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 646 SSSNVSP-----NTVIYNILIDS--LCKNN--QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 646 ~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
+ ..| +..+...|+.+ ....| ++++|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 234 23333344433 22223 677777777776553 3443333333336666677777777766554
Q ss_pred Hc-----CC---CCCH-HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 717 EH-----AC---HPDY-ISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 717 ~~-----g~---~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
+. .. .|+. .+...++......|+ +|.++++++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 32 00 1333 455455555555565 566666554
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=1.8e-08 Score=99.43 Aligned_cols=206 Identities=13% Similarity=0.058 Sum_probs=119.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHH
Q 048807 511 ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD---IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM--TPNSVT 585 (757)
Q Consensus 511 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 585 (757)
.+...+..+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|+++.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555556666666666666666666666665321 2 44556666666666666666666666665421 111334
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH
Q 048807 586 YNTLISFLSK--------SGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI 656 (757)
Q Consensus 586 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 656 (757)
+..+..++.. .|++++|+..|+++++.. |+ ......+ ..+..+.. .....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~-----~~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRA-----KLARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHH-----HHHHH
Confidence 5555556665 666666666666666542 22 1111111 01111110 00112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCC
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMKVKEVRPN----TNTYNAMFKGLRQK----------NMLDKAFKLMDRMIEHACHP 722 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p 722 (757)
+..++..|.+.|++++|+..|+++++. .|+ ...+..++.+|... |++++|+..++++++. .|
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p 226 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FP 226 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CC
Confidence 466788899999999999999998874 343 45677788888766 8899999999999875 45
Q ss_pred CH----HHHHHHHHHHHhcCCHHH
Q 048807 723 DY----ISMEILTEWLSEAGQTEK 742 (757)
Q Consensus 723 ~~----~~~~~l~~~~~~~g~~~~ 742 (757)
+. .....+...+...|+.++
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhhh
Confidence 54 333344444444444443
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=1e-08 Score=88.85 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
.+..++..|...|++++|..+|+++.+.++. +...+..++..+...|++++|.++|+++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 5677888999999999999999999887644 78889999999999999999999999998875 445677888889999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..|++++|.+.++++++.. +.+..++..++..+.+.|++++|.+.++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9999999999999998864 5567888889999999999999999998875
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.00 E-value=1.2e-08 Score=96.66 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=95.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC
Q 048807 589 LISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN 668 (757)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 668 (757)
+...|.+.|++++|+..|++.++.. +.+...+..+..+|...|++++|+..|+++.+. -+.+...|..++..|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 7788888888888888888888764 236778888888888888999998888888872 2345667888888876655
Q ss_pred C--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048807 669 Q--VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTE 732 (757)
Q Consensus 669 ~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 732 (757)
+ .+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......+..
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3 4455666665542 122223344456667778899999999999885 5788765554443
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=1.8e-07 Score=92.99 Aligned_cols=236 Identities=10% Similarity=0.061 Sum_probs=180.2
Q ss_pred HHHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCccchHHHHHHHH----Hh
Q 048807 269 FCRKGK-TDEAWDVLHVLMKFDAPLEAASCNALLNALGREG--DFKRMNQLFTEMKENDIEPSVVTFGTIINRL----CK 341 (757)
Q Consensus 269 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~ 341 (757)
..+.|. .++|++.++.++..++. +..+|+.-...+...| +++++++.++.++..+ +-+..+|+.-...+ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 334444 46899999999998866 7889999999999999 9999999999999875 44666777766666 55
Q ss_pred c---CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 342 L---YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQE--EALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 342 ~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
. ++++++++.++++++.+ +.+..+|+.-.-.+.+.|.++ ++++.++++. ...+.|...|+.-..
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i----~~d~~N~sAW~~R~~ 188 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI----DTDLKNNSAWSHRFF 188 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH----HHCTTCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH----HhCCCCHHHHHHHHH
Confidence 5 78999999999999876 778899999888888899988 9999999985 334678888988777
Q ss_pred HHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 048807 417 GFCKSGN------IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINS-AVEFFQEVTRKG--LCANAVTYTILITA 487 (757)
Q Consensus 417 ~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~ 487 (757)
...+.+. ++++++.+++++...+. |...|+-+...+.+.|+..+ +..+..++.+.+ -..+...+..++..
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 7777776 88888888888877544 77888888888888777444 445555555432 12367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 048807 488 FCNVNNFQEAIKWFDDMSRAGCSADSVVYFT 518 (757)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 518 (757)
|.+.|+.++|.++++.+.+.--+.....|+.
T Consensus 268 ~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 8888888888888888775321333344443
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=1.4e-08 Score=88.11 Aligned_cols=130 Identities=20% Similarity=0.224 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT 375 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
.|..++..+...|++++|.++|+++.+.+ +.+...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CCchHHHHH
Confidence 45566666666677777777776666543 2344555666666666666666666666666543 344556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
++..+...|++++|.+.++++.. ..+.+...+..++..+.+.|++++|.+.++++.+.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALE----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666666666666666666531 12334555666666666666666666666665543
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=3.4e-07 Score=91.09 Aligned_cols=221 Identities=10% Similarity=0.035 Sum_probs=166.7
Q ss_pred CChhHHHHHHHHhhccCCCc-chHHHHHHHHHhcC--ChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhcccc
Q 048807 162 SMYDYSLLVYNELDNNLRNT-HVRNVLIDVLLRCD--HDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSV 238 (757)
Q Consensus 162 g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 238 (757)
...++|+..++++....|+. .+||.-..++...| .++++++.++.++..+ |..++.
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk~y~a----------------- 105 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EKNYQI----------------- 105 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TTCCHH-----------------
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cccHHH-----------------
Confidence 34467888888887765654 56899899998888 9999999999998864 444321
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 048807 239 TDEELVGLVSKFAEHGVFPNAVWLTQLITRF----CRK---GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFK 311 (757)
Q Consensus 239 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 311 (757)
|+.-...+ .+. +++++++++++.+.+.++. +..+|+.-...+.+.|.++
T Consensus 106 -----------------------W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 106 -----------------------WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTT
T ss_pred -----------------------HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC
Confidence 11111111 122 6789999999999998766 8899999888888899888
Q ss_pred --HHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC------hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc
Q 048807 312 --RMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR------ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV 383 (757)
Q Consensus 312 --~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 383 (757)
++++.++++++.+ +-|...|+.....+...|+ ++++++.+++++..+ +.|..+|+-+...+.+.
T Consensus 162 ~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 162 DAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-------PQNPSTWNYLLGIHERF 233 (306)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhc
Confidence 9999999999886 4577788887777777776 889999999999875 77889999999889888
Q ss_pred CCHHH-HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 384 GKQEE-ALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 384 g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
|+..+ +..+..++... ....+.+...+..++.+|.+.|+.++|.++++.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 234 DRSITQLEEFSLQFVDL-EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TCCGGGGHHHHHTTEEG-GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88544 44566655210 111245778888888888888888888888888876
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=7.8e-08 Score=91.24 Aligned_cols=173 Identities=13% Similarity=0.055 Sum_probs=107.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 048807 532 ASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSG----NFSAARRVLK 607 (757)
Q Consensus 532 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 607 (757)
|...|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 55556666666666666666666666666654 45555556666655 4 6667777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHH
Q 048807 608 KMVKEGLVPTVVTYGALIHAFCV----NGHVDEAMKIFKELSSSSNVSPN---TVIYNILIDSLCK----NNQVELALSL 676 (757)
Q Consensus 608 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~ 676 (757)
+..+.| +...+..|...|.. .+++++|+.+|++..+ .+ +. ...+..|...|.. .+++++|+..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-ST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 666643 45556666666655 6677777777776665 22 21 4566667777766 6677777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 048807 677 MEEMKVKEVRPNTNTYNAMFKGLRQK-N-----MLDKAFKLMDRMIEHA 719 (757)
Q Consensus 677 ~~~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 719 (757)
|++..+. ..+...+..|...|... | +.++|+++|++..+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777664 23444566666666543 2 6777777777777665
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=4e-09 Score=119.17 Aligned_cols=153 Identities=10% Similarity=-0.068 Sum_probs=72.9
Q ss_pred HHcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 270 CRKGKTDEAWDVLHVLM--------KFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
...|++++|++.++++. +..+. +...|..+...|.+.|++++|.+.|+++++.+ +.+...|..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555554 32222 34445555555555555555555555555432 2233444445555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (757)
.|++++|++.|+++++.+ +.+...|..+...|.+.|++++ ++.|++.. .-.+.+...|..+..++.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al----~~~P~~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-------PGELAPKLALAATAELAGNTDE-HKFYQTVW----STNDGVISAAFGLARARSAE 547 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH----HHCTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHH-HHHHHHHH----HhCCchHHHHHHHHHHHHHc
Confidence 555555555555555432 3334445555555555555555 55554442 11233444455555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 048807 422 GNIEKGLELFHLMKQ 436 (757)
Q Consensus 422 g~~~~A~~~~~~m~~ 436 (757)
|++++|++.|++..+
T Consensus 548 g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPP 562 (681)
T ss_dssp TCHHHHHHHHHTSCT
T ss_pred CCHHHHHHHHHhhcc
Confidence 555555555554444
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=5.7e-08 Score=92.19 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG----DFKRMNQLFTEMKE 322 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~ 322 (757)
++..+..|...|...+++++|++.|++..+.| +..++..|...|.. + ++++|.+.|++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444444432 33344444444333 3 34444444444433
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=1.7e-09 Score=96.46 Aligned_cols=144 Identities=8% Similarity=-0.015 Sum_probs=76.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCCh
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRA 345 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 345 (757)
..++...|++++|+..++......+. +...+..+...|.+.|++++|.+.|++.++.. +.+..+|..+...|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 34444556666666666665544322 33445555666666666666666666666553 33455566666666666666
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 048807 346 DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGL-IEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422 (757)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (757)
++|+..|+++++.+ +.+..+|..+...|.+.|++++|.+. +++.. .-.|.+..+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al----~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAA----KLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH----HHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----HhCcCCHHHHHHHHHHHHHhC
Confidence 66666666666543 34455666666666666665544433 34432 112334455555444444444
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=8.2e-08 Score=92.14 Aligned_cols=186 Identities=10% Similarity=-0.026 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc----hH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV----TF 332 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 332 (757)
...+..++..+.+.|++++|+..|+++.+..+... ...+..++.+|.+.|++++|...|+++++.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 44566678889999999999999999998755422 4678889999999999999999999999864 4332 34
Q ss_pred HHHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 048807 333 GTIINRLCK------------------LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIE 394 (757)
Q Consensus 333 ~~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 394 (757)
..+..++.+ .|++++|+..|+++++.. |.+..++....... .+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~----------~~~~ 144 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLV----------FLKD 144 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHH----------HHHH
Confidence 445555543 578999999999999864 33343433221110 0111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 395 QMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN--VVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
.+ ......+...|.+.|++++|+..|+++++...... ...+..+..++.+.|+.++|.+.++.+...
T Consensus 145 ~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 145 RL-----------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HH-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HH-----------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 11 11223466778888888888888888887632111 245777888888888888888888888776
Q ss_pred CC
Q 048807 473 GL 474 (757)
Q Consensus 473 ~~ 474 (757)
++
T Consensus 214 ~~ 215 (225)
T 2yhc_A 214 SS 215 (225)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=1.6e-08 Score=101.12 Aligned_cols=168 Identities=12% Similarity=0.035 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchH-HH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF-GT 334 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ 334 (757)
+.+...+..+...+.+.|++++|+..|+++.+..+. +...+..+...+.+.|++++|...++++.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 556667778888888999999999999998887755 77888888899999999999999998887763 443322 22
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
....+.+.++.++|++.+++.++.. +.+...+..+...|...|++++|++.|.++... .....+...+..+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l 261 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-------PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTF 261 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHH
Confidence 2334567778888888888888764 667788888888888888888888888887522 1111225677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 048807 415 INGFCKSGNIEKGLELFHLMK 435 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~ 435 (757)
+..+...|+.++|...+++..
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHH
Confidence 888888888888877777654
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=1.8e-08 Score=113.90 Aligned_cols=174 Identities=11% Similarity=-0.004 Sum_probs=142.8
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 048807 340 CKLYRADEALEVFEKMI--------AGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTY 411 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 411 (757)
...|++++|++.+++++ +.. +.+...+..+...|.+.|++++|++.|+++.. ..+.+...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~ 470 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAE----RVGWRWRLV 470 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCCHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCcchHHHH
Confidence 67899999999999998 443 55678899999999999999999999999852 235678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 412 NCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV 491 (757)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 491 (757)
..+..+|.+.|++++|++.|++..+.... +...+..+...+.+.|++++ .+.|+++++.... +...|..+..+|.+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHc
Confidence 99999999999999999999999987433 67788999999999999999 9999999887544 777888999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048807 492 NNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR 528 (757)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 528 (757)
|++++|++.|++..+.+ +.+...+..+..++...++
T Consensus 548 g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999999888763 3345667777777665554
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=4.7e-08 Score=98.87 Aligned_cols=159 Identities=11% Similarity=-0.001 Sum_probs=70.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEAGF----RP-DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM---TPN--SVTYNTLIS 591 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~g~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~li~ 591 (757)
.|...|++++|...|.+..+... .+ -..+|+.+...|.+.|++++|...|++..+... .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666655443210 00 022455555555555666666665555443210 011 124444455
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHH
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVP-T----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TVIYNILID 662 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~ 662 (757)
.|.. |++++|+..|++.++..... + ..++..+...|...|++++|+..|++..+...-.++ ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5544 55555555555544321000 0 233444445555555555555555544431000011 113334444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048807 663 SLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~ 681 (757)
++...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 4444455555555555544
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=9.5e-09 Score=91.48 Aligned_cols=145 Identities=7% Similarity=-0.042 Sum_probs=95.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
...+...|++++|++.+++..... +.+...+..+...|.+.|++++|++.|++... -.+.+..+|..+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~~~a~~~lg 72 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERDPKAHRFLG 72 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHH
Confidence 344555677777777777776542 33455666777778888888888888877742 2355677777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEF-FQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
.+|.+.|++++|+..|++..+.... +..++..+...|.+.|++++|.+. ++++++..+. ++.+|......+...|+
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 8888888888888888777775322 566777777777777777665544 4666665433 56666666666555553
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=2.5e-08 Score=91.56 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH-HH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR-LC 340 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~ 340 (757)
+..+...+.+.|++++|+..|+++.+.++. +...+..+...+.+.|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 444566777788888888888877766544 67777778888888888888888887776653 233222221111 11
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC-MPNAVTYNCLINGFC 419 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~ 419 (757)
..+...+|+..+++.++.. +.+...+..+...+...|++++|...|+++. .... ..+...+..+...+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-------PDNFELACELAVQYNQVGRDEEALELLWNIL---KVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTTTTTHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHH---HhCcccChHHHHHHHHHHHH
Confidence 2223334666666666643 4456666667777777777777777776663 1111 112445666666666
Q ss_pred HcCCHHHHHHHHHHHH
Q 048807 420 KSGNIEKGLELFHLMK 435 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~ 435 (757)
..|+.++|...|++.+
T Consensus 156 ~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHCSSCHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHH
Confidence 6666666666666544
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=5.5e-08 Score=98.42 Aligned_cols=207 Identities=11% Similarity=0.061 Sum_probs=125.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEV 351 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 351 (757)
.|++++|.+++++..+.... . .+...+++++|...|.++ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 46777888888877654221 1 011147788888777765 3456778888888888
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--NAVTYNCLINGFCKSGNIEKGLE 429 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~ 429 (757)
|.++++...... ....-..+|+.+...|.+.|++++|+..|++..........+ -..+++.+...|.. |++++|++
T Consensus 59 ~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 59 YLQEAEAHANNR-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 888765320000 001114567788888888888888888888764321111111 13566777777777 88888888
Q ss_pred HHHHHHhCCCCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048807 430 LFHLMKQEGVTP-N----VVTLNTLVDGMCRHGRINSAVEFFQEVTRKG----LCAN-AVTYTILITAFCNVNNFQEAIK 499 (757)
Q Consensus 430 ~~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~A~~ 499 (757)
.|++..+..... + ..++..+...|.+.|++++|+..|+++++.. ..+. ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887766531100 1 3456666777777777777777777666531 1111 1244455555666677777777
Q ss_pred HHHHHH
Q 048807 500 WFDDMS 505 (757)
Q Consensus 500 ~~~~m~ 505 (757)
.|++.+
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776665
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=3.9e-07 Score=87.33 Aligned_cols=186 Identities=10% Similarity=0.061 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CH-HHHH
Q 048807 547 DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMT-P-NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP-TV-VTYG 622 (757)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~-~~~~ 622 (757)
+...+..+...+.+.|++++|...|+++.+.... + ....+..++.+|.+.|++++|+..|+++++..... .. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777788889999999999988876311 1 13567778888888999999999999888753221 11 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 623 ALIHAFCV------------------NGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 623 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
.+..++.. .|++++|...|+++.+.. |+. ..+..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHH----------HHHHHH---
Confidence 45555544 345555555555555421 211 1111100000 000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHhhchhccC
Q 048807 684 EVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY----ISMEILTEWLSEAGQTEKLKKFVQGYAVSAA 755 (757)
Q Consensus 684 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 755 (757)
......++..+.+.|++++|+..|+++++. .|+. ..+..++.++.+.|+.++|.+.++++...++
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 001134566777888888888888888864 3432 4677788888888888888888887654443
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=3.9e-08 Score=109.07 Aligned_cols=153 Identities=11% Similarity=-0.050 Sum_probs=82.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHH
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVF 352 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 352 (757)
|++++|++.|+++.+..+. +...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566666666666655433 55666666666666666666666666666553 234455666666666666666666666
Q ss_pred HHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc---CCHHHHHH
Q 048807 353 EKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS---GNIEKGLE 429 (757)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~ 429 (757)
+++++.. +.+...+..+...|.+.|++++|.+.+++... ..+.+...+..+...+... |+.++|.+
T Consensus 81 ~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 81 QQASDAA-------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ----LLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 6666543 34455666666666666666666666666531 1234455666666666666 66666666
Q ss_pred HHHHHHhCC
Q 048807 430 LFHLMKQEG 438 (757)
Q Consensus 430 ~~~~m~~~g 438 (757)
.+++..+.+
T Consensus 150 ~~~~al~~~ 158 (568)
T 2vsy_A 150 QVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 666666543
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=3.7e-08 Score=90.41 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=26.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
.+...+.+.|++++|+..|+++++.+ +.+...+..+...+.+.|++++|...+++.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-------QSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 33444444555555555555444432 334444555555555555555555555443
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=5.6e-08 Score=97.17 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (757)
.+...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|...++++... .|+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--------~p~~~ 185 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--------DQDTR 185 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--------GCSHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--------hcchH
Confidence 356677788888899999999999999998874 445677888888999999999999999988764 34443
Q ss_pred HH-HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 048807 372 IF-NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP-NVVTLNTL 449 (757)
Q Consensus 372 ~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 449 (757)
.. ......+.+.++.++|.+.+++.. ...+.+...+..+...+...|++++|++.|.++.+..... +...+..+
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al----~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQV----AENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHH----hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 33 333334667778888888888774 2346678888888899999999999999998888864221 25678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 048807 450 VDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~~~~ 471 (757)
+..+...|+.++|...|++.+.
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 8888888888888888777653
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=1.3e-07 Score=104.91 Aligned_cols=154 Identities=8% Similarity=-0.042 Sum_probs=118.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (757)
.|++++|++.++++++.. +.+...|..+...|.+.|++++|.+.+++.. ...+.+...|..+...|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-------PQDFVAWLMLADAELGMGDTTAGEMAVQRGL----ALHPGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----TTSTTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHC
Confidence 478899999999988764 5568899999999999999999999999984 34466788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHH
Q 048807 422 GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV---NNFQEAI 498 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~ 498 (757)
|++++|.+.+++..+... .+...+..+...+.+.|++++|.+.++++.+.... +...+..+...+... |+.++|.
T Consensus 71 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHH
Confidence 999999999999998743 36788999999999999999999999999887543 678888999999999 9999999
Q ss_pred HHHHHHHHcC
Q 048807 499 KWFDDMSRAG 508 (757)
Q Consensus 499 ~~~~~m~~~~ 508 (757)
+.+++..+.+
T Consensus 149 ~~~~~al~~~ 158 (568)
T 2vsy_A 149 AQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999998875
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=1.7e-07 Score=80.33 Aligned_cols=111 Identities=13% Similarity=0.034 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...|.+.|++++|++.|+++++.++. +..+|..+..+|.+.|++++|++.|++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 346777899999999999999999999998765 89999999999999999999999999999875 4567889999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
+...|++++|++.|+++++.+ |.+..++..|..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-------P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-------PSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-------cCCHHHHHHHHH
Confidence 999999999999999999865 556666665544
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=2.9e-06 Score=85.14 Aligned_cols=224 Identities=11% Similarity=0.058 Sum_probs=158.8
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc-C-Ch
Q 048807 269 FCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG-DFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL-Y-RA 345 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~ 345 (757)
..+.+..++|+++++.++..++. +..+|+.-...+...| .++++++.++.++... +-+..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 33445567899999999998866 7889999888888888 5999999999999875 45677888887777776 7 89
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 346 DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQE--------EALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
+++++.++++++.+ +.|..+|+--.-.+.+.|.++ ++++.++++. ...+.|..+|+.....
T Consensus 142 ~~EL~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I----~~dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML----RVDGRNNSAWGWRWYL 210 (349)
T ss_dssp HHHHHHHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH----HhCCCCHHHHHHHHHH
Confidence 99999999999875 678888888777777666666 8888888874 2346688888888888
Q ss_pred HHHcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHH
Q 048807 418 FCKSGN-------IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRI--------------------NSAVEFFQEVT 470 (757)
Q Consensus 418 ~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~ 470 (757)
+.+.+. ++++++.++++...... |...|+-+-..+.+.|+. ....+...++.
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 777775 67888888888776433 677777766666665553 11111111111
Q ss_pred HCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 471 RKG-----LCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 471 ~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
..+ -.+.......|++.|...|+.++|.++++.+.+
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 111 023555566666666666666666666666553
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=6.4e-07 Score=84.84 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|+..+++.++.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4445555556666666666665543 3455555556666666666666666666655542 2244555555555666
Q ss_pred cCCHHHHHHHHHHhhhcCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 631 NGHVDEAMKIFKELSSSSNVSP--------------NTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 631 ~g~~~~A~~~~~~~~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
.|++++|...|++..+...-.+ ....+..++.+|.+.|++++|...|++..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666666655555111000 013455555555555555555555555554
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=3.3e-07 Score=88.92 Aligned_cols=187 Identities=7% Similarity=-0.075 Sum_probs=117.8
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCcc--------------
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNAL-------LNALGREGDFKRMNQLFTEMKENDIEPSV-------------- 329 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------------- 329 (757)
..++...|.+.|.++.+.++. ....|+.+ ...+.+.++..+++..+..-++. .|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 578999999999999988765 78888888 56666666667776666665542 2221
Q ss_pred --------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 048807 330 --------VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQ 401 (757)
Q Consensus 330 --------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 401 (757)
..+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~---- 162 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--------SEHLVAWMKAVVYGAAERWTDVIDQVKSAG---- 162 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGG----
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 012234456667777777777777766533 332255666667777777777777776542
Q ss_pred CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 402 KGCMPN--AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN--VVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 402 ~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
....|. ...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 163 KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111111 23566667777777777777777777664322133 234555566666777777777777777665
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=4.8e-07 Score=79.99 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.+...+..+...+.+.|++++|+..|+++.+.+|. +...|..+..+|.+.|++++|...|++.++.. +.+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 35667888999999999999999999999998765 88999999999999999999999999999875 45678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 048807 337 NRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
.+|.+.|++++|+..|+++++..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999853
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.66 E-value=1.1e-05 Score=81.13 Aligned_cols=170 Identities=12% Similarity=0.051 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-C
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG-KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS-G 422 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 422 (757)
.++|++++++++..+ +.+..+|+.-...+...| .+++++++++.+ ....+.+..+|+.-...+.+. +
T Consensus 70 se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~----L~~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 70 SERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEF----AVQNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp SHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHTTCCCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHhCCCcHHHHHHHHHHHHHhcC
Confidence 345556666655543 344455555555555555 356666666555 223344555555555555444 4
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 423 -NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRIN--------SAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 423 -~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
+.++++++++++.+...+ |..+|+--.-.+.+.|.++ ++++.++++++..+. |..+|+-....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 555666666666554322 4445544444444434443 666666666665443 66666666655555554
Q ss_pred -------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048807 494 -------FQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR 528 (757)
Q Consensus 494 -------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 528 (757)
++++++.+++++... +.|...|+-+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566666666666553 4566666665555555544
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=1e-06 Score=83.37 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
+..+...+.+.|++++|++.|+++. .++..+|..+...|.+.|++++|.+.|++.++.. +.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555555555555555543 2345555555555555555555555555555443 2234445555555555
Q ss_pred cCChhHHHHHHHHHHhC
Q 048807 342 LYRADEALEVFEKMIAG 358 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~ 358 (757)
.|++++|++.|+++++.
T Consensus 84 ~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 55555555555555543
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=1.6e-06 Score=86.84 Aligned_cols=167 Identities=11% Similarity=0.111 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--H
Q 048807 550 CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS------VTYNTLISFLSKSGNFSAARRVLKKMVKEGL---VPT--V 618 (757)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~ 618 (757)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++.++... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556667777777777777776655311 21 1233455566777888888888888775321 112 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh---cCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSS---SSNVSP--NTVIYNILIDSLCKNNQVELALSLMEEMKVK----EVRPN- 688 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 688 (757)
.+++.+...|...|++++|...+++..+ ..+..+ ...++..++..|.+.|++++|+..+++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778888888888888888888888762 111111 1247888888899999999999999887742 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 048807 689 TNTYNAMFKGLRQKNMLDKA-FKLMDRMIE 717 (757)
Q Consensus 689 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 717 (757)
..+|..++.+|.+.|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788888899999999999 777887754
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=6.6e-08 Score=96.28 Aligned_cols=99 Identities=14% Similarity=-0.063 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...+..+...+.+.|++++|+..|+++++..+. +...|..+...|.+.|++++|.+.+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455666677777777777777777777766543 66677777777777777777777777776653 334556666667
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 048807 338 RLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~ 358 (757)
+|...|++++|+..|+++++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776653
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=1.8e-06 Score=86.47 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC--CCCC--H
Q 048807 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV-----VTYGALIHAFCVNGHVDEAMKIFKELSSSSN--VSPN--T 654 (757)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~--~ 654 (757)
..+...+..+...|++++|.+.+.+.++....... ..+..+...+...|++++|+..+++..+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 45556777889999999999999998875322111 2244466667888999999999999875211 1122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVK-EVRPN-----TNTYNAMFKGLRQKNMLDKAFKLMDRMIEH----ACHPD- 723 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~- 723 (757)
.+|+.++..|...|++++|+..|+++.+. ...|+ ..++..++.+|.+.|++++|++++++.++. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 48899999999999999999999998731 01222 257889999999999999999999998753 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHhh
Q 048807 724 YISMEILTEWLSEAGQTEKL-KKFVQG 749 (757)
Q Consensus 724 ~~~~~~l~~~~~~~g~~~~A-~~~~~~ 749 (757)
..+|..++..+...|+.++| ..++++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 47888999999999999999 776665
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=8.5e-06 Score=81.51 Aligned_cols=165 Identities=12% Similarity=0.106 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGM-TPNS----VTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PT----VVTYG 622 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 622 (757)
..+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..++++++.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667788888888888888776421 1121 12334666666777888888888888874222 22 33678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc---C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSS---S-NVSPN-TVIYNILIDSLCKNNQVELALSLMEEMKV----KEVRPN-TNTY 692 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 692 (757)
.+...|...|++++|...++++.+. . +..+. ..+|..++..|.+.|++++|+..+++.++ .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888888988888888887631 1 11122 23678888889999999999998888774 222222 5678
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHH
Q 048807 693 NAMFKGLRQKN-MLDKAFKLMDRMIE 717 (757)
Q Consensus 693 ~~l~~~~~~~g-~~~~A~~~~~~~~~ 717 (757)
..++.++.+.| .+++|.+.++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888888 46899998888864
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=5.4e-06 Score=82.96 Aligned_cols=173 Identities=12% Similarity=0.038 Sum_probs=122.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc-----chHH
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAP-LE----AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV-----VTFG 333 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~ 333 (757)
..+..+.+.|++++|...+++..+.... ++ ...+..+...+...|++++|...|+++.+.....+. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3477889999999999999999885432 12 113345777778888999999999999985322222 2688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-CCCCCC-HHHH
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQ-KGCMPN-AVTY 411 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~-~~~~ 411 (757)
.+...|...|++++|+..|+++++.-.......+....++..+...|.+.|++++|.+.+++...... .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999998421000000122244788899999999999999999887653211 111222 5678
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHh
Q 048807 412 NCLINGFCKSG-NIEKGLELFHLMKQ 436 (757)
Q Consensus 412 ~~li~~~~~~g-~~~~A~~~~~~m~~ 436 (757)
..+..+|.+.| ++++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888888 46888888877654
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=7.1e-07 Score=80.49 Aligned_cols=130 Identities=15% Similarity=0.024 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...+...|++++|...|++..+..+. +..+|..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 346777888999999999999999999987654 78899999999999999999999999999875 4467788889999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT--LIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+...|++++|.+.++++++.. +.+...+.. ++..+.+.|++++|.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999864 445555533 4444778899999998888764
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=5.7e-07 Score=77.58 Aligned_cols=121 Identities=10% Similarity=0.004 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+.+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...|...|++++|.+.|++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 567778899999999999999999999999988654 78999999999999999999999999999874 4467788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK 385 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 385 (757)
...+.+.|++++|++.|++.++.. +.+...+..+...+.+.|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhcC
Confidence 999999999999999999998864 4456777777777776653
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=9.1e-07 Score=75.11 Aligned_cols=116 Identities=21% Similarity=0.211 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..++..|.+.|++++|.+.|+++.+..+. +..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 567888999999999999999999999987643 78899999999999999999999999999874 4567788899999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV 383 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 383 (757)
+...|++++|...++++++.. +.+...+..+...+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-------PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHhc
Confidence 999999999999999998864 45666777776666544
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=1.3e-06 Score=84.72 Aligned_cols=206 Identities=10% Similarity=-0.021 Sum_probs=145.4
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCccchHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCC---C--c-cc----
Q 048807 303 ALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI-------INRLCKLYRADEALEVFEKMIAGKET---A--E-IS---- 365 (757)
Q Consensus 303 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~---~--~-~~---- 365 (757)
++ +.++...|.+.|.++.+.+ +-....|..+ ...+.+.++..+++..+...++.... . . .+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 44 5799999999999999975 3456778888 56777777777887777776652100 0 0 00
Q ss_pred ----ccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 366 ----VEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP 441 (757)
Q Consensus 366 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (757)
+..-...+..+...+...|++++|.++|+.+ ..+. |+......+...+.+.+++++|+..|+...+.. .|
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~----~~~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~ 167 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAA----PVAG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DK 167 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSS----CCTT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHH----HhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cc
Confidence 0011234556788899999999999999987 3333 333377777778999999999999998665431 11
Q ss_pred C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 048807 442 N--VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN--AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYF 517 (757)
Q Consensus 442 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 517 (757)
. ...+..+..++.+.|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++.... |+...+.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~ 245 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHH
Confidence 1 23677788889999999999999999885433243 3356667788889999999999999988874 4443333
Q ss_pred H
Q 048807 518 T 518 (757)
Q Consensus 518 ~ 518 (757)
.
T Consensus 246 a 246 (282)
T 4f3v_A 246 A 246 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=8.4e-07 Score=83.19 Aligned_cols=166 Identities=9% Similarity=-0.075 Sum_probs=113.4
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CccchHHHHHHHHHhcCC
Q 048807 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN----DIE-PSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~ 344 (757)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996665544 33346788999999999999999999999998762 212 234567888889999999
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHcC
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGFCKSG 422 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 422 (757)
+++|.+.+++.++..............++..+...+...|++++|...+++..........+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 999999999987641000000002245678888899999999999999988753211111111 234566777777788
Q ss_pred CHHHHHHHHHHHHh
Q 048807 423 NIEKGLELFHLMKQ 436 (757)
Q Consensus 423 ~~~~A~~~~~~m~~ 436 (757)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888777776654
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.59 E-value=7.1e-07 Score=76.38 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...+......|.+.|++++|++.|++.++.+ +.+..+|..+..+|.+.|++++|+..|+++++.+ +.+..+|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-------SKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-------hhhhHHH
Confidence 3456666666777777777777777766654 3355666666666677777777777777766654 4456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..+..+|...|++++|.+.|++..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666777777776666653
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=1.2e-06 Score=79.01 Aligned_cols=130 Identities=12% Similarity=0.022 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+...|++++|...|++.++.. +.+..++..+...+...|++++|+..+++.++.. +.+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHH
Confidence 3456666777777777777777777777653 3355666667777777777777777777777653 4456667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC--LINGFCKSGNIEKGLELFHLMK 435 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 435 (757)
..+...+...|++++|...+++.... .+.+...+.. ++..+.+.|++++|++.+....
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777777777776421 2334444433 3333556667777766666543
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=9.3e-07 Score=75.79 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...+..++..+...|++++|.+.|+++.+..+. +...|..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 4567888899999999999999999999987654 78899999999999999999999999999874 445778888999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQ 386 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 386 (757)
.+...|++++|...++++++.. +.+...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999864 55778888888888887764
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=4.1e-07 Score=90.50 Aligned_cols=99 Identities=8% Similarity=-0.069 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 407 NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILIT 486 (757)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 486 (757)
+...+..+...+.+.|++++|++.|++..+... .+...|..+...|.+.|++++|...++++++.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 344555566666666666666666666665422 25556666666666666666666666666655332 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 048807 487 AFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~ 507 (757)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665543
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=1.3e-06 Score=74.16 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|+..++++++.. +.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CccHHHH
Confidence 4556666666666677777776666666543 2344555666666666666666666666666543 3455566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..+...|...|++++|...++++.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 666666666666666666666653
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=6.7e-07 Score=79.04 Aligned_cols=121 Identities=9% Similarity=-0.052 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
+...+.+.+...+.+++++ +..+. +...+..+...+.+.|++++|...|++++..+ +.+...|..+..+|.
T Consensus 11 ~~~~l~~~~~~~~~l~~al-------~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDIN-------AIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGC-------CSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHh-------CCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3455555555555555443 32222 56788899999999999999999999999875 457888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..|++++|+..|+++++.+ |.+...|..+..+|.+.|++++|...|++..
T Consensus 82 ~~g~~~~Ai~~~~~al~l~-------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALG-------KNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHS-------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999875 5678899999999999999999999999985
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=6.6e-07 Score=79.11 Aligned_cols=97 Identities=13% Similarity=-0.034 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...+.+.|++++|+..|+++.+.++. +...|..+..+|.+.|++++|.+.|++.+..+ +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 334444444555555555555555555444332 44445555555555555555555555554432 2233444444445
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 048807 339 LCKLYRADEALEVFEKMIA 357 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~ 357 (757)
|...|++++|++.|+++++
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=1.3e-06 Score=89.23 Aligned_cols=131 Identities=13% Similarity=0.003 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--------------AASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+...+..+...|.+.|++++|+..|+++++..+... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455788899999999999999999999999875532 589999999999999999999999999987
Q ss_pred CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 048807 324 DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEA-LGLIEQM 396 (757)
Q Consensus 324 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~ 396 (757)
. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.|+.++| ...+..|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4567889999999999999999999999999875 56788899999999999999988 4456655
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=7.2e-05 Score=74.72 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=91.7
Q ss_pred HHHcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 269 FCRKGKTD-EAWDVLHVLMKFDAPLEAASCNALLNALGREGD----------FKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 269 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
..+.|.+. +|++.++.++..+|. +..+|+.--..+...|. +++++.+++.++... +-+..+|+.-..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556654 788888888888765 67777766555544443 567777777777654 345666766666
Q ss_pred HHHhcCC--hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 338 RLCKLYR--ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK-QEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 338 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
.+.+.|+ +++++..++++++.+ +.|..+|+.-.-.+...|. ++++++.++++. ...+.|..+|+..
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I----~~~p~N~SAW~~R 185 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI----TRNFSNYSSWHYR 185 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH----HHCSCCHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH----HHCCCCHHHHHHH
Confidence 6666663 677777777777765 5667777776666666676 467777777764 2235566677666
Q ss_pred HHHHHHc
Q 048807 415 INGFCKS 421 (757)
Q Consensus 415 i~~~~~~ 421 (757)
...+.+.
T Consensus 186 ~~ll~~l 192 (331)
T 3dss_A 186 SCLLPQL 192 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=1.4e-06 Score=74.94 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.++++++.. +.+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------PTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCchHH
Confidence 45677777777777777777777777777653 3355666667777777777777777777777653 445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (757)
+..+...|.+.|++++|.+.|++.... .+.+...+..+...+.+.|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDL----DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhc
Confidence 777777777777777777777766421 2234455555555555444
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.4e-06 Score=81.64 Aligned_cols=62 Identities=11% Similarity=-0.075 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKE-VRPN----TNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.+..+...+...|++++|...+++..+.. -..+ ..++..+..++...|++++|.+.+++.++
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34445555555555555555555544210 0011 12234555555555666666655555543
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=1.4e-07 Score=96.53 Aligned_cols=149 Identities=11% Similarity=-0.055 Sum_probs=96.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc----------------chHHHHH
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV----------------VTFGTII 336 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~li 336 (757)
+++++|++.++...+..+ .+...|..+...|.+.|++++|...|++.++.. |+. .+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHH
Confidence 444555554444333221 156788889999999999999999999998864 332 5666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
.+|.+.|++++|+..++++++.. +.+..+|..+..+|...|++++|+..|++... -.+.+...+..+..
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ----LYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHH
Confidence 66677777777777777766653 44566666666677777777777777666632 12445566666666
Q ss_pred HHHHcCCHHHH-HHHHHHHH
Q 048807 417 GFCKSGNIEKG-LELFHLMK 435 (757)
Q Consensus 417 ~~~~~g~~~~A-~~~~~~m~ 435 (757)
++.+.|+.++| ..+++.|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666 33444443
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.1e-06 Score=80.33 Aligned_cols=118 Identities=7% Similarity=0.091 Sum_probs=77.2
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH-HHhcCCh--hH
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR-LCKLYRA--DE 347 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~ 347 (757)
..|++++|+..+++..+..+. +...|..+...|...|++++|...|++..+.+ +.+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456777777777777666543 66777777777777777777777777776653 3345556666666 5567776 77
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
|+..++++++.+ +.+...+..+...|...|++++|...++++.
T Consensus 100 A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 100 TRAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 777777777653 4456667777777777777777777777764
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=5.2e-06 Score=70.94 Aligned_cols=118 Identities=11% Similarity=-0.014 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFK 697 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 697 (757)
...+..+...+...|++++|...+++..+. .+.+...+..++..+...|++++|...+++..... +.+...+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 344555556666666666666666666551 22345566666666666666667766666666532 234556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048807 698 GLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQ 739 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 739 (757)
++...|++++|.+.++++++.. +.+...+..+...+...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6677777777777777766541 2244555566666655554
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=2.9e-06 Score=72.51 Aligned_cols=98 Identities=14% Similarity=0.024 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...+.+.|++++|+..|++.++.++. +...|..+..+|.+.|++++|...|++.++.+ +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 446777889999999999999999999998755 78999999999999999999999999999875 4467788999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 048807 339 LCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~ 358 (757)
+...|++++|+..|+++++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=1.5e-06 Score=76.83 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=72.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 048807 281 VLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE 360 (757)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 360 (757)
.|+++.+.++. +...+..+...+.+.|++++|...|++.+..+ +.+...|..+..+|...|++++|+..|+++++.+
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 44555554422 55667777777788888888888888877764 4466677777777788888888888888877754
Q ss_pred CCcccccCCHhHHHHHHHHHHHcCCHHHHHH
Q 048807 361 TAEISVEPDVIIFNTLIDGLCKVGKQEEALG 391 (757)
Q Consensus 361 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 391 (757)
+.+..++..+..+|...|++++|.+
T Consensus 86 ------p~~~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 86 ------IXEPRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp ------TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 4566777777888888888777654
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=1.4e-06 Score=76.45 Aligned_cols=99 Identities=18% Similarity=-0.026 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...+..+...+.+.|++++|+..|+++.+.++. +...|..+..+|.+.|++++|...|++.+..+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4456777888999999999999999999998765 88999999999999999999999999999875 456778888999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 048807 338 RLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~ 358 (757)
+|...|++++|++.|+++++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=2.2e-07 Score=87.00 Aligned_cols=151 Identities=11% Similarity=-0.134 Sum_probs=80.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc---------------
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV--------------- 329 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 329 (757)
.+......|++++|.+.++......+ .....+..+...+.+.|++++|.+.|++.++.. +.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence 33444455666666666553322111 135567778888888888888888888888753 1122
Q ss_pred -chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCH
Q 048807 330 -VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNA 408 (757)
Q Consensus 330 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 408 (757)
..+..+..+|.+.|++++|+..++++++.. +.+..++..+..+|...|++++|.+.|++... ..+.+.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~ 156 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS----LNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCcH
Confidence 455555566666666666666666666543 34555666666666666666666666666531 123345
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 048807 409 VTYNCLINGFCKSGNIEKGL 428 (757)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~ 428 (757)
..+..+..++...++.+++.
T Consensus 157 ~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444444
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=3.2e-06 Score=72.41 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCc----cchHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDI--EPS----VVTFG 333 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 333 (757)
..+..|...|.+.|++++|++.|+++++.++. +..+|+.+..+|.+.|++++|++.|++.++.+. .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 46777999999999999999999999998765 789999999999999999999999999987531 111 13577
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
.+...+...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7888889999999999999999874
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.42 E-value=0.00013 Score=72.98 Aligned_cols=166 Identities=11% Similarity=0.091 Sum_probs=106.9
Q ss_pred HhcCChh-HHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhcCCCCCCH
Q 048807 340 CKLYRAD-EALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK----------QEEALGLIEQMRLRLQKGCMPNA 408 (757)
Q Consensus 340 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 408 (757)
.+.|.++ +|+.+++.++..+ |.+..+|+.--..+...+. +++++.+++.+. ...+.+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L----~~~PKny 108 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL----RVNPKSY 108 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HHCTTCH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH----HhCCCCH
Confidence 3455544 7888888888765 5556667765555544433 567777777773 3346677
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 409 VTYNCLINGFCKSG--NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGR-INSAVEFFQEVTRKGLCANAVTYTILI 485 (757)
Q Consensus 409 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li 485 (757)
.+|+.-...+.+.| .+++++++++++.+.... |..+|+.-.-.+...|. ++++++.+.++++..+. |..+|+...
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~ 186 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS 186 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 78877777777777 478888888888876543 67777776666677777 47788888887776544 677777665
Q ss_pred HHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 048807 486 TAFCNV--------------NNFQEAIKWFDDMSRAGCSADSVVYFTL 519 (757)
Q Consensus 486 ~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l 519 (757)
..+.+. +.++++++.+++.+... |.|..+|+-+
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 555444 23555555555555443 3444444433
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=5.4e-06 Score=69.37 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..++..+...|++++|.+.|+++.+..+. +...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456778889999999999999999999987654 78899999999999999999999999999875 4457788889999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG 379 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (757)
+...|++++|.+.+++.++.+ +.+...+..+...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-------ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHHh
Confidence 999999999999999999864 4455555555443
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.40 E-value=1.8e-06 Score=79.05 Aligned_cols=122 Identities=7% Similarity=0.061 Sum_probs=83.5
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH-HHHc
Q 048807 305 GREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG-LCKV 383 (757)
Q Consensus 305 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 383 (757)
...|++++|...+++..+.. +.+...|..+...|...|++++|+..|+++++.. +.+...+..+... +...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhc
Confidence 34577777887787777654 3455677777777778888888888888877653 4466677777777 6677
Q ss_pred CCH--HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 384 GKQ--EEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEG 438 (757)
Q Consensus 384 g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (757)
|++ ++|...+++... ..+.+...+..+...|...|++++|.+.|+++.+..
T Consensus 93 ~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALA----LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777 888888777642 234456777777777778888888888887777753
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.37 E-value=4.6e-06 Score=71.38 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHH
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE--VRPN----TNTY 692 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~ 692 (757)
..+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.|++.++.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34555666667777777777777766661 22345566677777777777777777777766421 1111 1356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 728 (757)
..++.++...|++++|++.|++.++. .||+.+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 66777777788888888888877763 56665443
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=5.1e-06 Score=72.01 Aligned_cols=102 Identities=15% Similarity=-0.047 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+.+...+..+...+.+.|++++|+..|+++.+.++. +...|..+...+...|++++|...|++.++.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 456788999999999999999999999999988755 78999999999999999999999999999875 4467788999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 048807 336 INRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
...+...|++++|+..|+++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999998753
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.33 E-value=1.4e-06 Score=76.39 Aligned_cols=97 Identities=12% Similarity=-0.019 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...+..+...+.+.|++++|...|++.+..+ +.+...|..+..++.+.|++++|+..|+++++.+ +.+...
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 88 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-------INEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCcHH
Confidence 44566667777778888888888888877764 3456667777777788888888888888877764 456667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+..+..+|...|++++|.+.|++..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777778888888888888887764
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=5e-06 Score=74.93 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.+...+..+...|.+.|++++|++.|+++++..+. +...|..+..+|.+.|++++|+..|++.++.+ +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35667888999999999999999999999998755 88999999999999999999999999999875 44678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 048807 337 NRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..|...|++++|+..|+++++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999998854
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=5.5e-06 Score=70.70 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+.+.|++++|...|++.++.. +.+...|..+..++.+.|++++|+..++++++.+ +.+..+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHH
Confidence 3456666667777777777777777777654 3355666677777777777777777777777654 4456667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..+..++...|++++|.+.|++..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHH
Confidence 777777777777777777777664
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=1.5e-05 Score=66.47 Aligned_cols=95 Identities=17% Similarity=-0.011 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...+..++..+...|++++|.+.|++..... +.+...+..+...+...|++++|...++++++.. +.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------cccHHHH
Confidence 3455556666666666666666666666543 2344555555666666666666666666666543 3345556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
..+...+...|++++|.+.+++.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666666666666655
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=7.6e-06 Score=76.39 Aligned_cols=129 Identities=14% Similarity=0.032 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE---------------AASCNALLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
..+..+...+.+.|++++|++.|+++.+..+... ..+|..+..+|.+.|++++|...+++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788899999999999999999998754422 2789999999999999999999999999874
Q ss_pred CCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 048807 325 IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEAL-GLIEQM 396 (757)
Q Consensus 325 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~ 396 (757)
+.+...+..+..+|...|++++|++.|+++++.. +.+..++..+..++...++.+++. ..+..+
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999864 557788888888888877777666 444444
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=5.4e-06 Score=70.94 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCc----cchH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDI--EPS----VVTF 332 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 332 (757)
...+..+...+...|++++|...|+++.+..+. +...+..+...|...|++++|...++++..... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 346778889999999999999999999987644 788999999999999999999999999987631 111 6678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL 380 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 380 (757)
..+...+...|++++|.+.|+++++. .|+...+..+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--------HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--------CCCHHHHHHHHHHH
Confidence 88889999999999999999999885 35666665555443
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.5e-05 Score=69.86 Aligned_cols=115 Identities=15% Similarity=0.085 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE---AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
+.+...+..+...+.+.|++++|.+.|++..+..+. + ...|..+...|...|++++|.+.+++..+.. +.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 457788899999999999999999999999987643 2 6889999999999999999999999998874 3456778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG 379 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (757)
..+...+...|++++|...|++.++.. +.+...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-------PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHH
Confidence 888999999999999999999998864 4455555544443
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=5.7e-06 Score=68.48 Aligned_cols=100 Identities=12% Similarity=-0.019 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--ccchHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP--SVVTFGTI 335 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 335 (757)
+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...+...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 4456777888999999999999999999987654 78899999999999999999999999999874 33 56778889
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhCC
Q 048807 336 INRLCKL-YRADEALEVFEKMIAGK 359 (757)
Q Consensus 336 i~~~~~~-g~~~~A~~~~~~~~~~~ 359 (757)
...+.+. |++++|++.+++++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999 99999999999998764
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=6.7e-06 Score=69.61 Aligned_cols=96 Identities=7% Similarity=-0.020 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
+..+...+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|+..|++.++.+ +.+...+..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 455778899999999999999999998765 89999999999999999999999999999875 4467788899999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 048807 342 LYRADEALEVFEKMIAGK 359 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~ 359 (757)
.|++++|+..++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998753
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=1.1e-05 Score=69.00 Aligned_cols=111 Identities=10% Similarity=0.067 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEV--RPN----TNTY 692 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 692 (757)
..+..+...+...|++++|...+++..+. .+.+...+..++..|...|++++|...++++..... .++ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555666666667777777777666652 223455666667777777777777777777665310 112 5566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEW 733 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 733 (757)
..++.++...|++++|.+.++++++. .|+...+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 67777777777777777777777764 4555555544443
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=2.3e-05 Score=70.41 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555555555556666665555555543 3345555555555555666666666665555542 12345555555555
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 048807 629 CVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~ 646 (757)
...|++++|...|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 556666666665555554
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=5.9e-05 Score=66.00 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 617 TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 692 (757)
+...+..+...+...|++++|...|++..+ ..|+ ...|..+...|.+.|++++|+..+++..... +.+...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 455666666667777777777777777665 2344 4566777777777777777777777776642 2356667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
..+..++...|++++|.+.+++.++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777788887777777764
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=6.6e-05 Score=79.68 Aligned_cols=198 Identities=11% Similarity=0.022 Sum_probs=114.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC
Q 048807 485 ITAFCNVNNFQEAIKWFDDMSRAGCSADS----------------VVYFTLISGLCQAGRMNDASLVVSKLKEAGF-RPD 547 (757)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~ 547 (757)
...+.+.|++++|++.|.++++....... .++..++..|...|++++|.+.+..+.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788888888888888876422111 1356677777777777777777776554211 111
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC--
Q 048807 548 I----VCYNHLISGFCKKKMLDKAYEVLQEMEDI----GMTPN-SVTYNTLISFLSKSGNFSAARRVLKKMVKE--GL-- 614 (757)
Q Consensus 548 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-- 614 (757)
. ...+.+...+...|++++|.+++++.... +..+. ..++..++..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233333444566777777777665431 11122 345666677777777777777777766542 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 615 VP-TVVTYGALIHAFCVNGHVDEAMKIFKELSSS---SNVSPN--TVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 615 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
.+ ...++..++..|...|++++|..++++.... ...++. ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1345666667777777777777777665431 111111 13455556666666777777777766654
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=1.4e-05 Score=66.13 Aligned_cols=97 Identities=13% Similarity=-0.016 Sum_probs=45.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--C
Q 048807 330 VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--N 407 (757)
Q Consensus 330 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~ 407 (757)
..+..+...+...|++++|...++++++.. +.+..++..+...+...|++++|.+.+++... ..+. +
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVIN----VIEDEYN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSCCTTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCcccch
Confidence 334444444455555555555555554432 23344444555555555555555555554421 1122 3
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC
Q 048807 408 AVTYNCLINGFCKS-GNIEKGLELFHLMKQE 437 (757)
Q Consensus 408 ~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 437 (757)
...|..+...+.+. |++++|.+.++...+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 44444455555555 5555555555554443
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=1.6e-05 Score=68.88 Aligned_cols=98 Identities=11% Similarity=0.030 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (757)
.+...|..+...+...|++++|...|++.+... +.+...|..+...+...|++++|+..++++++.+ +.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------chhHH
Confidence 356777777888888888888888888877764 3356667777777778888888888888877754 45667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 372 IFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
.+..+...|...|++++|...|++..
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777888888888888888777764
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=5.8e-05 Score=64.38 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc---cchHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEA---ASCNALLNALGREGDFKRMNQLFTEMKENDIEPS---VVTFGTI 335 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l 335 (757)
+..+...+.+.|++++|...|+.+.+..+. +. ..+..+...+.+.|++++|...|+++.+.. +.+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 344677888999999999999999987654 33 688889999999999999999999999874 223 4567788
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 048807 336 INRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..++.+.|++++|...|+++++..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 889999999999999999998863
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=9.7e-05 Score=78.38 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=144.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC
Q 048807 449 LVDGMCRHGRINSAVEFFQEVTRKGLCAN----------------AVTYTILITAFCNVNNFQEAIKWFDDMSRAGC-SA 511 (757)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~ 511 (757)
-...+.+.|++++|.+.|.++++...... ..++..++..|.+.|++++|.+.+.++...-- .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35667889999999999999998754321 12467789999999999999999998875311 11
Q ss_pred CH----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 048807 512 DS----VVYFTLISGLCQAGRMNDASLVVSKLKEA----GFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDI--GM- 579 (757)
Q Consensus 512 ~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~- 579 (757)
+. .+.+.+...+...|++++|..+++..... +..+. ..++..+...|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 12233334445678999999999886542 22333 457788999999999999999999987643 11
Q ss_pred -CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 580 -TP-NSVTYNTLISFLSKSGNFSAARRVLKKMVKE--GLV-P-T--VVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 580 -~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
.+ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2357888899999999999999999988753 111 2 1 24566667777889999999999988766
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=2.7e-05 Score=83.21 Aligned_cols=131 Identities=11% Similarity=-0.021 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--------------AASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
....+..+...|.+.|++++|+..|+++++..+... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345788899999999999999999999998765422 689999999999999999999999999987
Q ss_pred CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 048807 324 DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALG-LIEQM 396 (757)
Q Consensus 324 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~ 396 (757)
. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.++.++|.+ .+..|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4567889999999999999999999999999875 5567888999999999998887764 44444
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.3e-05 Score=69.81 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HH
Q 048807 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PT----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TV 655 (757)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 655 (757)
++..+...|...|++++|...+++.++.... ++ ..++..+...+...|++++|...+++..+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554432000 01 124445555555666666666665554431100011 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVK----EVRP-NTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.+..+...+...|++++|...+++..+. +..+ ....+..+..++...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4555666666666666666666665531 1111 123455666666777777777777776654
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=8.8e-06 Score=87.39 Aligned_cols=121 Identities=14% Similarity=0.017 Sum_probs=98.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
+...|.+.|++++|++.|+++.+..+. +..+|..+..+|.+.|++++|.+.+++.++.. +.+..++..+...|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 445667889999999999999988654 78999999999999999999999999999975 4467788999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH--HHHcCCHHHHHHHHH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG--LCKVGKQEEALGLIE 394 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 394 (757)
+++|++.|+++++.. +.+..++..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999864 4455566666666 888899999999988
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=2.2e-05 Score=70.40 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKF--------DA---------PLEAASCNALLNALGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 321 (757)
...+......+.+.|++++|+..|.+.++. .+ +.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 346777889999999999999999998875 11 1245789999999999999999999999999
Q ss_pred HCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 322 ENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 322 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
+.+ +.+...|..+..+|...|++++|+..|+++++.+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 875 4567889999999999999999999999999854
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=2.9e-05 Score=65.60 Aligned_cols=96 Identities=14% Similarity=-0.017 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT 410 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (757)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++... -.+.+...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~~ 87 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPKDIAV 87 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHH
Confidence 34555566667777777777777777654 45666777777777777777777777776632 22445666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
+..+..+|.+.|++++|++.+++.++.
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777776654
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=4.7e-05 Score=67.67 Aligned_cols=140 Identities=13% Similarity=0.030 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-Cc----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKENDIE-PS----VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
++..+...|...|++++|.+.+++..+.... ++ ..++..+...+...|++++|.+.+++.++..... .......
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcHHHH
Confidence 4455555555555666555555555432100 01 1355666677777777887777777766431000 0001124
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKG-C-MPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
.++..+...+...|++++|.+.+++........ . .....++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 466777778888888888888887764221111 0 11133455566666666666666666665543
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=2.9e-05 Score=80.18 Aligned_cols=123 Identities=14% Similarity=0.052 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMK----------------FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
..+..+...|.+.|++++|++.|+++++ ..+ .+..+|..+..+|.+.|++++|++.+++.++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3577889999999999999999999987 322 25678999999999999999999999999987
Q ss_pred CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHH
Q 048807 324 DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALG 391 (757)
Q Consensus 324 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 391 (757)
. +.+...|..+..+|...|++++|++.|+++++.. +.+...+..+...+.+.++.+++.+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4467788899999999999999999999999864 5577788888888888887777654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.96 E-value=1.1e-05 Score=67.85 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=65.2
Q ss_pred HcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHH
Q 048807 271 RKGKTDEAWDVLHVLMKFD--APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 348 (757)
..|++++|+..|+++++.+ .+.+..+|..+...|.+.|++++|.+.|++.++.. +.+..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888888864 12256778888888888888888888888888874 34567777888888888888888
Q ss_pred HHHHHHHHhC
Q 048807 349 LEVFEKMIAG 358 (757)
Q Consensus 349 ~~~~~~~~~~ 358 (757)
+..+++.++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888775
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=0.00016 Score=61.46 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=54.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCcc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCC---HhH
Q 048807 299 ALLNALGREGDFKRMNQLFTEMKENDIEPSV---VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPD---VII 372 (757)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~ 372 (757)
.+...+.+.|++++|...|+++.+.. +.+. ..+..+...+.+.|++++|+..|+++++.. +.+ ..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~ 78 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------PTHDKAAGG 78 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTSTTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------CCCcccHHH
Confidence 34455666667777777776666643 1122 255556666666666666666666666543 222 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+..+..+|.+.|++++|...|+++.
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666666666666653
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.95 E-value=7.4e-05 Score=65.23 Aligned_cols=98 Identities=17% Similarity=0.081 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHC-----
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL------EA-----ASCNALLNALGREGDFKRMNQLFTEMKEN----- 323 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 323 (757)
..+......+.+.|++++|+..|+++++..+.. +. ..|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 356678888999999999999999999876541 23 39999999999999999999999999986
Q ss_pred --CCCCccchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 324 --DIEPSVVTF----GTIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 324 --g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
+ +-+...| .....++...|++++|+..|++.++.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 3356678 88999999999999999999999874
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=8.4e-05 Score=66.51 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 654 TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 654 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
...|..+..+|.+.|++++|+..+++.+... +.+...|..++.++...|++++|+..|++.++. .|+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 4567888888888888888888888888752 345778888888888888888888888888864 5654
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.94 E-value=3e-05 Score=83.21 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHH
Q 048807 298 NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLI 377 (757)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li 377 (757)
..+...+.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|++.++++++.+ +.+..+|..+.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg 81 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRRA 81 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence 334455677889999999999888864 3456778888888888999999999999988865 55678888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 048807 378 DGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING--FCKSGNIEKGLELFH 432 (757)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 432 (757)
..|.+.|++++|++.|++.... .+.+...+..+..+ +.+.|++++|++.++
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH----STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8899999999999998887522 23344555555555 778888888888887
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=0.00027 Score=77.20 Aligned_cols=175 Identities=11% Similarity=0.023 Sum_probs=124.6
Q ss_pred HHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 270 CRKGK-TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGD----------FKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 270 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
.+.|+ -++|++.++.+++.++. +..+|+.-...+.+.|+ ++++++.++++.+.. +-+..+|..-...
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34444 46789999999988766 78888888777777777 888888888888875 4467778887777
Q ss_pred HHhcC--ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 339 LCKLY--RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG-KQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 339 ~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
+.+.| +++++++.++++++.+ +.|..+|+.-.-.+.+.| .++++++.++++ ....+.|..+|+...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~----I~~~p~n~saW~~r~ 185 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL----ITRNFSNYSSWHYRS 185 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT----TTTTCCCHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhc-------cccccHHHHHHHHHHHcCCChHHHHHHHHHH----HHHCCCCccHHHHHH
Confidence 88888 6688889898888876 667888888888888888 788888888877 444566788888777
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 416 NGFCKS--------------GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGR 458 (757)
Q Consensus 416 ~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (757)
..+.+. +.++++++.+++....... |...|.-+...+.+.++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 766653 3345555555555554322 44445544444444443
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.91 E-value=9.3e-05 Score=79.02 Aligned_cols=142 Identities=12% Similarity=-0.020 Sum_probs=79.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc----------------cchHHHHH
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPS----------------VVTFGTII 336 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li 336 (757)
+++++|++.|+...+..+ .....|..+...|.+.|++++|...|++.++.. |+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHH
Confidence 344555555544333211 145678889999999999999999999998753 22 24455555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
.+|.+.|++++|+..++++++.+ +.+..+|..+..+|...|++++|+..|++.. .-.+.+...+..+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al----~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVL----EVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTC----CHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHHHHH
Confidence 55555555555555555555543 3345555555555555555555555555542 222333444555555
Q ss_pred HHHHcCCHHHHH
Q 048807 417 GFCKSGNIEKGL 428 (757)
Q Consensus 417 ~~~~~g~~~~A~ 428 (757)
++.+.++.+++.
T Consensus 394 ~~~~~~~~~~a~ 405 (457)
T 1kt0_A 394 CQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=0.0004 Score=75.88 Aligned_cols=173 Identities=11% Similarity=0.052 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 563 MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN----------FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
..++|++.++++.+.. +.+..+|+.-...+.+.|+ ++++++.++++++... -+..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 3457788888888775 5566677776666666666 8888888888887642 36777877777778888
Q ss_pred --CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-------
Q 048807 633 --HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN-QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQK------- 702 (757)
Q Consensus 633 --~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------- 702 (757)
+++++++.++++.+. -+.|...|+.....+.+.| .++++++.++++++.. +-|...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 668888888888882 3357778888888888888 8888888888888753 34677787777776653
Q ss_pred -------CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 048807 703 -------NMLDKAFKLMDRMIEHACHP-DYISMEILTEWLSEAGQTEK 742 (757)
Q Consensus 703 -------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 742 (757)
+.+++|++++++++.. .| |...|..+...+.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5689999999999874 45 45888888888877776443
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.89 E-value=7.5e-05 Score=77.09 Aligned_cols=139 Identities=6% Similarity=-0.087 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+.+.|++++|.+.|++.++.- ++. ..... .+...+. .+.+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~-------~~~~~~~~ 276 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKL-------QPVALSCV 276 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGG-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHH-------HHHHHHHH
Confidence 3457788889999999999999999888620 000 00000 0111001 12233445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGM 453 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (757)
..+..+|.+.|++++|++.+++.. ...+.+...|..+..+|...|++++|++.|++..+... .+...+..+...+
T Consensus 277 ~nla~~~~~~g~~~~A~~~~~~al----~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 277 LNIGACKLKMSDWQGAVDSCLEAL----EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH----HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 555555555555555555555542 22233445555555555555555555555555554421 1344444444444
Q ss_pred HHcCChHHHH
Q 048807 454 CRHGRINSAV 463 (757)
Q Consensus 454 ~~~g~~~~A~ 463 (757)
...++.+++.
T Consensus 352 ~~~~~~~~a~ 361 (370)
T 1ihg_A 352 QKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.88 E-value=0.00014 Score=63.57 Aligned_cols=93 Identities=9% Similarity=-0.069 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKEVRPN--------T-----NTYNAMFKGLRQKNMLDKAFKLMDRMIEH---- 718 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 718 (757)
.+...+..+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3556666777777777777777777763 233 2 27888888888889999999888888862
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHhhc
Q 048807 719 -ACHPDY-ISM----EILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 719 -g~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
.+.|+. ..| .....++...|++++|...+++-
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 127766 677 88899999999999999988873
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=2.5e-05 Score=65.60 Aligned_cols=84 Identities=10% Similarity=-0.001 Sum_probs=52.2
Q ss_pred cCChhHHHHHHHHHHHCC--CCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC
Q 048807 307 EGDFKRMNQLFTEMKEND--IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG 384 (757)
Q Consensus 307 ~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 384 (757)
.|++++|...|++.++.+ -+.+...+..+...|...|++++|+..|+++++.. +.+..++..+..+|.+.|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcC
Confidence 466777777777776653 12234556666667777777777777777776653 445666666777777777
Q ss_pred CHHHHHHHHHHHH
Q 048807 385 KQEEALGLIEQMR 397 (757)
Q Consensus 385 ~~~~A~~~~~~~~ 397 (757)
++++|...+++..
T Consensus 76 ~~~~A~~~~~~al 88 (117)
T 3k9i_A 76 RYEQGVELLLKII 88 (117)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777776654
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.83 E-value=2.4e-05 Score=64.64 Aligned_cols=96 Identities=11% Similarity=-0.005 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD-------YI 725 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~ 725 (757)
+...+..++..+.+.|++++|+..|++.++.. +.+...|..++.++.+.|++++|++.++++++ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 44567778888888888888888888888742 34677788888888888888888888888885 3554 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 726 SMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
.+..+..++...|+.++|.+.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 66667777777777777777666654
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=5.6e-05 Score=77.11 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
....+..+...|.+.|++++|+..|+++++.. |+... +...|+.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 35567777777778888888888888877653 22211 222333333332221 125677778
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
+|.+.|++++|+..++++++.+ +.+..+|..+..+|...|++++|...|++.. .-.+.+...+..+...
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al----~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQ----KYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT----C---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHCCCCHHHHHHHHHH
Confidence 8888888888888888888764 4567788888888888888888888888773 2233345555555544
Q ss_pred -HHHcCCHHHHHHHHHHHHhC
Q 048807 418 -FCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 418 -~~~~g~~~~A~~~~~~m~~~ 437 (757)
....+..+++.++|..|...
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 23345566666777776654
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.72 E-value=5.7e-05 Score=77.05 Aligned_cols=134 Identities=11% Similarity=-0.035 Sum_probs=62.5
Q ss_pred cccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 048807 236 NSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQ 315 (757)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 315 (757)
.....++|...+.+.++.. |+... +...|+.+++...+. ..+|+.+..+|.+.|++++|+.
T Consensus 191 ~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp SSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCCHHHHHH
Confidence 4456688888888877652 33221 222333333332221 1356667777777777777777
Q ss_pred HHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH-HHcCCHHHHHHHHH
Q 048807 316 LFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL-CKVGKQEEALGLIE 394 (757)
Q Consensus 316 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~ 394 (757)
.|++.++.. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+.... ...+..+++...|.
T Consensus 252 ~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-------p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 252 HCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-------PDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777653 3355666777777777777777777777776543 33444555554442 23445556666666
Q ss_pred HH
Q 048807 395 QM 396 (757)
Q Consensus 395 ~~ 396 (757)
++
T Consensus 324 ~~ 325 (338)
T 2if4_A 324 GI 325 (338)
T ss_dssp --
T ss_pred Hh
Confidence 65
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00025 Score=75.52 Aligned_cols=134 Identities=10% Similarity=-0.017 Sum_probs=84.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC----CCCHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEP-DVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC----MPNAVTYN 412 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~ 412 (757)
.+...|++++|+.++++.++..+..-..-.| -..+++.|...|...|++++|+.++++.......-. +....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4557899999999999887643211111122 245789999999999999999999887643212111 22245677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQE-----GVT-PN-VVTLNTLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
.|...|...|++++|+.++++..+. |.. |+ ..+.+.+..++...+.+++|..+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887776542 211 11 12334444555555666666666655544
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=0.00038 Score=74.12 Aligned_cols=128 Identities=8% Similarity=-0.034 Sum_probs=87.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHH
Q 048807 379 GLCKVGKQEEALGLIEQMRLRLQKGCMPN----AVTYNCLINGFCKSGNIEKGLELFHLMKQE-----G-VTPN-VVTLN 447 (757)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~ 447 (757)
.+...|++++|+.++++.......-..++ ..+++.|...|...|++++|+.++++.++. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45578999999999888754323322232 567888899999999999999888887642 2 1222 35678
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRK-----GLC-A-NAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
.|...|...|++++|..+++++++. |.. | ...+.+.+..++...+.+++|..+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888876652 322 1 123445555666677777777777777654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.0014 Score=56.64 Aligned_cols=87 Identities=9% Similarity=0.025 Sum_probs=36.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048807 449 LVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN----VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLC 524 (757)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 524 (757)
+...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|+..|++..+.| +...+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333333444444444444444432 33344444444444 344444444444444433 3333444444443
Q ss_pred h----cCChhHHHHHHHHHHH
Q 048807 525 Q----AGRMNDASLVVSKLKE 541 (757)
Q Consensus 525 ~----~g~~~~A~~~~~~~~~ 541 (757)
. .++.++|...|++..+
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHH
Confidence 3 3444444444444433
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=3.6e-05 Score=63.55 Aligned_cols=94 Identities=9% Similarity=-0.014 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc-------cc
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPS-------VV 330 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 330 (757)
+...+..+...+.+.|++++|++.|+++.+..+. +...|..+..+|.+.|++++|.+.|++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 4557788999999999999999999999988755 78999999999999999999999999999864 44 33
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEK 354 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~ 354 (757)
.+..+..++...|+.++|++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 455555566666666555554443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.0002 Score=59.61 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 277 EAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMI 356 (757)
Q Consensus 277 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 356 (757)
+|++.|+++.+.++. +...|..+...|.+.|++++|...|++.++.+ +.+...|..+...|...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666665543 56666666677777777777777777766653 3345556666666777777777777777665
Q ss_pred h
Q 048807 357 A 357 (757)
Q Consensus 357 ~ 357 (757)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.63 E-value=0.0012 Score=56.98 Aligned_cols=48 Identities=19% Similarity=0.044 Sum_probs=19.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVK 611 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 611 (757)
.+++++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 334444444444444332 33333334444443 3444444444444444
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=0.00014 Score=63.40 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=75.5
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHCCCCCccchHHHHHHHH
Q 048807 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDF----------KRMNQLFTEMKENDIEPSVVTFGTIINRL 339 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 339 (757)
.+.+.+++|++.+++..+.++. +...|+.+..++.+.|++ ++|+..|++.++.+ +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556788888888888887765 788888888888887765 48888888888875 33567788888888
Q ss_pred Hhc-----------CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 340 CKL-----------YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 340 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
... |++++|++.|+++++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--------~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 776 4899999999999984 566555544433
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.53 E-value=0.00047 Score=54.14 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE 322 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 322 (757)
..+..+...|.+.|++++|+..|++..+..+. +..+|..+...+.+.|++++|.+.|++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555555444322 344444444444444444444444444444
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.52 E-value=0.00052 Score=53.89 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.++..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45677888888888899999999998888764 3456677888888888999999999998887765
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.49 E-value=0.00022 Score=62.04 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 632 GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQ----------VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ 701 (757)
Q Consensus 632 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 701 (757)
+.+++|.+.++...+. -+.+...|..+..++.+.++ +++|+..|++.++.. +.+...|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 3344444444444441 12233444444444444433 346666666666531 2244566666666665
Q ss_pred c-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048807 702 K-----------NMLDKAFKLMDRMIEHACHPDYISMEILTEW 733 (757)
Q Consensus 702 ~-----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 733 (757)
. |++++|++.|+++++ +.|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4 367777777777776 46766555444433
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.43 E-value=0.00047 Score=57.27 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048807 583 SVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKEL 644 (757)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 644 (757)
...+..+...|...|++++|+..|++.++.. +.+...+..+..+|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333344444444444444444444443321 112333333344444444444444444333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.0011 Score=53.48 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE 322 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 322 (757)
+.+..++..+..+|.+.|++++|+..|+++++.++. +..+|..+..+|.+.|++++|.+.|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666777777777777777777777766544 556666777777777777777777766654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.0012 Score=53.28 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+...+..++..|.+.|++++|+..|++.++.. +.+...|..++.+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45567777777777777777777777777642 23455677777777777777777777777764
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.04 E-value=0.0066 Score=60.78 Aligned_cols=74 Identities=15% Similarity=0.040 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048807 651 SPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 728 (757)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++++. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 4577788888777777799999999999998863 7887888888888899999999999999886 477776654
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.77 E-value=0.0025 Score=50.92 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=63.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAA-SCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
.+..+.+.|++++|++.|+++.+.++. +.. .|..+...|...|++++|.+.|++.++.+ +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 566788999999999999999987654 677 89999999999999999999999999874 223333321 4
Q ss_pred ChhHHHHHHHHHHh
Q 048807 344 RADEALEVFEKMIA 357 (757)
Q Consensus 344 ~~~~A~~~~~~~~~ 357 (757)
.+.++...|++...
T Consensus 76 ~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 76 MVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHhc
Confidence 55666776666544
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.76 E-value=0.0052 Score=64.18 Aligned_cols=96 Identities=13% Similarity=-0.037 Sum_probs=66.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC---CC-CHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPD-VIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC---MP-NAVTYNCLI 415 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~-~~~~~~~li 415 (757)
..|++++|+.++++.++..+..-..-.|+ ..+++.|...|...|++++|+.++++.......-. .| -..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35789999999998876322111111222 46788999999999999999999988643222211 22 245678888
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 048807 416 NGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (757)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877664
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.63 E-value=0.035 Score=55.62 Aligned_cols=66 Identities=8% Similarity=-0.036 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 405 MPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4556666666666666677777777777776654 56666666666666677777777777666665
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.60 E-value=0.017 Score=60.47 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=70.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccc-cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC----CHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISV-EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP----NAVT 410 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ 410 (757)
+..+.+.|++++|+.++++.++.....-... +.-..+++.|+..|...|++++|+.++++.......-..| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4456678899999999999987532211111 1224578899999999999999999998764322221122 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888888888888888888877664
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.54 E-value=0.03 Score=43.98 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 256 FPNAVWLTQLITRFCRKGK---TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
+.|...+..+..++...++ .++|..++++.++.++. ++.+...+...+.+.|++++|...|+++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577778888888865555 68999999999998866 88889999999999999999999999999875
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.50 E-value=0.011 Score=46.94 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 048807 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTN-TYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEA 737 (757)
Q Consensus 660 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~ 737 (757)
.+..+.+.|++++|+..|+++.+.. +.+.. .|..++.++...|++++|++.|+++++. .|+. ..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------
Confidence 4556677788888888888877642 23456 7777777888888888888888888764 4443 33211
Q ss_pred CCHHHHHHHHhhc
Q 048807 738 GQTEKLKKFVQGY 750 (757)
Q Consensus 738 g~~~~A~~~~~~~ 750 (757)
+.++++...+++.
T Consensus 75 ~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 KMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666553
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.45 E-value=0.014 Score=61.04 Aligned_cols=89 Identities=8% Similarity=-0.077 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHH
Q 048807 383 VGKQEEALGLIEQMRLRLQKGCMPN----AVTYNCLINGFCKSGNIEKGLELFHLMKQE-----G-VTPN-VVTLNTLVD 451 (757)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~li~ 451 (757)
.|++++|+.++++.......-..|+ ..+++.|...|...|++++|+.++++.++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4778888888877653322222222 456778888888888888888888776642 2 1222 245667777
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 048807 452 GMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~ 471 (757)
.|...|++++|..+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777766554
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.24 E-value=0.033 Score=58.20 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=49.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHH
Q 048807 379 GLCKVGKQEEALGLIEQMRLRLQKGCMPN----AVTYNCLINGFCKSGNIEKGLELFHLMKQE-----G-VTPN-VVTLN 447 (757)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~ 447 (757)
-+.+.|++++|+.++++.......-..|+ ..+++.++..|...|++++|+.+++++++. | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456667777776666542211112222 345666666666666666666666655532 1 1111 23455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
.|...|...|++++|..+++++.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566666666666666665555443
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.20 E-value=0.17 Score=58.20 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=103.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 487 AFCNVNNFQEAIK-WFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLD 565 (757)
Q Consensus 487 ~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 565 (757)
.....+++++|.+ ++..+. +......++..+.+.|..++|.++.+. .. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3445778888766 442211 122336677777788888887765531 11 1123345678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 566 KAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 566 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
+|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887765432 3667788888888888888888887776643 2334444445555555444433333
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-
Q 048807 646 SSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY- 724 (757)
Q Consensus 646 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~- 724 (757)
. .|. ++....+|.+.|++++|++ .|.+.|++++|..+-++. .|..
T Consensus 735 ~-~~~------~~~A~~~~~~~g~~~~a~~----------------------~~~~~~~~~~A~~lA~~~-----~~~~~ 780 (814)
T 3mkq_A 735 T-TGK------FNLAFNAYWIAGDIQGAKD----------------------LLIKSQRFSEAAFLGSTY-----GLGDN 780 (814)
T ss_dssp H-TTC------HHHHHHHHHHHTCHHHHHH----------------------HHHHTTCHHHHHHHHHHT-----TCCHH
T ss_pred H-cCc------hHHHHHHHHHcCCHHHHHH----------------------HHHHcCChHHHHHHHHHh-----CCChH
Confidence 3 111 2223333444444444444 445556677777665542 3444
Q ss_pred ---HHHHHHHHHHHhcCCHH
Q 048807 725 ---ISMEILTEWLSEAGQTE 741 (757)
Q Consensus 725 ---~~~~~l~~~~~~~g~~~ 741 (757)
.........+...|+.+
T Consensus 781 ~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 781 EVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHhccchh
Confidence 44444555566667643
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.97 E-value=0.18 Score=57.89 Aligned_cols=190 Identities=14% Similarity=0.095 Sum_probs=117.2
Q ss_pred HHHHHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048807 451 DGMCRHGRINSAVE-FFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRM 529 (757)
Q Consensus 451 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 529 (757)
......+++++|.+ ++..+ ++......++..+.+.|..++|+++.++.. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 44456889999877 54221 112334778888999999999987664211 113345778999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (757)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999886543 3778999999999999999999999987652 223444455566666544444333
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 610 VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT 689 (757)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 689 (757)
...|+++.|...+...-+ +...++.|.+.+++++|..+-+.. .|..
T Consensus 734 -------------------~~~~~~~~A~~~~~~~g~----------~~~a~~~~~~~~~~~~A~~lA~~~-----~~~~ 779 (814)
T 3mkq_A 734 -------------------ETTGKFNLAFNAYWIAGD----------IQGAKDLLIKSQRFSEAAFLGSTY-----GLGD 779 (814)
T ss_dssp -------------------HHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHT-----TCCH
T ss_pred -------------------HHcCchHHHHHHHHHcCC----------HHHHHHHHHHcCChHHHHHHHHHh-----CCCh
Confidence 344455555544433222 334455556666777777766542 2333
Q ss_pred ----HHHHHHHHHHHHcCCHHH
Q 048807 690 ----NTYNAMFKGLRQKNMLDK 707 (757)
Q Consensus 690 ----~~~~~l~~~~~~~g~~~~ 707 (757)
.........+...|+.+.
T Consensus 780 ~~i~~~~~~~~~~L~~~~~~~~ 801 (814)
T 3mkq_A 780 NEVNDIVTKWKENLILNGKNTV 801 (814)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccchhH
Confidence 333333444555565433
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.58 Score=41.21 Aligned_cols=128 Identities=9% Similarity=0.069 Sum_probs=91.2
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhH
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADE 347 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 347 (757)
....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 456789999999998775 2788999999999999999999999988653 4556666777888877
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKG 427 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 427 (757)
-.++-+.....+ -++.....+.-.|+++++.++|.+.. ..| --+......|-.+.|
T Consensus 79 L~kla~iA~~~g------------~~n~af~~~l~lGdv~~~i~lL~~~~------r~~------eA~~~A~t~g~~~~a 134 (177)
T 3mkq_B 79 LSKMQNIAQTRE------------DFGSMLLNTFYNNSTKERSSIFAEGG------SLP------LAYAVAKANGDEAAA 134 (177)
T ss_dssp HHHHHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHHTT------CHH------HHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCc------------cHHHHHHHHHHcCCHHHHHHHHHHCC------ChH------HHHHHHHHcCcHHHH
Confidence 776666655544 24445556667899999999987652 111 111122235667777
Q ss_pred HHHHHHH
Q 048807 428 LELFHLM 434 (757)
Q Consensus 428 ~~~~~~m 434 (757)
.++.+.+
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777665
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.76 E-value=0.68 Score=38.17 Aligned_cols=139 Identities=14% Similarity=0.055 Sum_probs=92.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMK 639 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (757)
-.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+. .| ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence 356666777766666654 24555555554444444444444444444321 12 134566666666
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048807 640 IFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 640 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 719 (757)
.+-.+-. +.......++.+..+|+-++-.++...+... .+|++.....+..+|.+-|+..+|.+++.++.+.|
T Consensus 83 C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 5544322 4445677788888999999999999886542 47889999999999999999999999999999888
Q ss_pred CC
Q 048807 720 CH 721 (757)
Q Consensus 720 ~~ 721 (757)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.55 Score=41.36 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=50.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048807 594 SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELA 673 (757)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 673 (757)
.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 3455566665555443 2455566666666666666666666655433 33444444455555554
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 674 LSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 674 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.++-+.....| -++....++...|+++++++++.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44444433332 1233333444556666666555443
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.57 E-value=0.099 Score=40.96 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 291 PLEAASCNALLNALGREGD---FKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 291 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
+.+...+..+..++...++ .++|..++++.++.+ +.++.+...+...+.+.|++++|+..|+++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3578888899988876555 799999999999986 4567778888899999999999999999999865
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.47 E-value=4.6 Score=45.77 Aligned_cols=310 Identities=12% Similarity=0.068 Sum_probs=166.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------CCCHHHHHHHH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPN--VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL-------CANAVTYTILI 485 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li 485 (757)
.-+....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++...+...- .+....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3456677888888888877664211112 23333444556666766778887777665321 01122223333
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCCHhh--HH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 486 TAFCNVNN-FQEAIKWFDDMSRAGCSADSVV--YF--TLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 486 ~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
-+++-.|. -+++...+..++... +... .. +|...+...|+.+-...++..+.+.. .-+..-...+.-++..
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence 33433342 245666666666542 2211 22 23333456677777777777766542 1122222333334457
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHH---HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSV-TYN---TLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH--AFCVNGHV 634 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~ 634 (757)
.|+.+.+..+.+.+.... +.. -|. ++.-+|+..|+.....+++..+.+. ++..+....+. ++...|+.
T Consensus 537 ~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 537 YGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSC
T ss_pred CCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCH
Confidence 888888888888887642 332 222 3445667788887777788888874 23333333333 34456777
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------C
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQV-ELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN---------M 704 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~ 704 (757)
+.+.++++.+.+ .+ .|.+..-..+.-+....|+. .+|+..+..+.. .+|..+-..-+.++..-| +
T Consensus 611 e~v~rlv~~L~~-~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 611 TTVPRIVQLLSK-SH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp SSHHHHTTTGGG-CS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHHHHHHHHHh-cC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 777777776665 22 34444444444444445443 678888888875 456554444444443332 3
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 048807 705 LDKAFKLMDRMIEH-ACHPDYISMEILTEWLSEAGQ 739 (757)
Q Consensus 705 ~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~ 739 (757)
+..-++.+.+.... .-+++...-..+..++...|.
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 34444444444332 113334555566666666653
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.47 E-value=1.4 Score=42.17 Aligned_cols=90 Identities=12% Similarity=0.107 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCH
Q 048807 529 MNDASLVVSKLKEAGFRPD---IVCYNHLISGFCKK-----KMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKS-GNF 599 (757)
Q Consensus 529 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 599 (757)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666665 344 44677777777774 78888888888877774222366666777777764 778
Q ss_pred HHHHHHHHHHHhCCCC--CCHHH
Q 048807 600 SAARRVLKKMVKEGLV--PTVVT 620 (757)
Q Consensus 600 ~~A~~~~~~m~~~~~~--p~~~~ 620 (757)
++|.+.+++.+..... |+...
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhH
Confidence 8888888887776554 55433
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.39 E-value=0.17 Score=43.44 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 652 PNTVIYNILIDSLCKNN---QVELALSLMEEMKVKEVRP--NTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 652 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
++..+...+..++++.+ ++++++.++++..+.. .| +...+-.+.-++.+.|++++|.++++.+++ +.|+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 104 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 45555555555666655 4446666666655532 13 233444455555666666666666666665 35543
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.37 E-value=0.091 Score=42.21 Aligned_cols=67 Identities=12% Similarity=-0.064 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFD------APLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
.+..-|..|...+.+.|+++.|...|+.+.+.. .......+..+..+|.+.|+++.|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355567789999999999999999999987642 1235678899999999999999999999999876
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.35 E-value=0.12 Score=44.29 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHHHHH
Q 048807 277 EAWDVLHVLMKFDAPLEAASCNALLNALGREG---DFKRMNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEALEV 351 (757)
Q Consensus 277 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~ 351 (757)
.+.+-|.+..+.+. ++..+...+..++++.+ +++++..+|++..+.+ .| +...+..+.-++.+.|++++|++.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444443 35555555555555555 4445555555555543 12 233334444555666666666666
Q ss_pred HHHHHh
Q 048807 352 FEKMIA 357 (757)
Q Consensus 352 ~~~~~~ 357 (757)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666655
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.29 E-value=0.16 Score=40.74 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKE------VRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
-...++..+.+.|+++.|...|+++.+.- -.+....+..+..++.+.|++++|+.+++++++ +.|+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34455666666666666666666655420 122345666677777777777777777777765 34544
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.25 E-value=0.94 Score=37.36 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048807 442 NVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG 473 (757)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 473 (757)
+......+..+|.+.|+..+|.+++.++.+.|
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333344444444444444444444444433
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.19 E-value=0.0001 Score=74.88 Aligned_cols=249 Identities=12% Similarity=0.075 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
.+.+|..|..++.+.|++.+|++.|-+. .|+..|..+|....+.|.+++-.+.+.-..+.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3447888888888888888887765332 255667888888888888888888776665542 34455567888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------h-
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLR----------------L- 400 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------~- 400 (757)
+|++.++..+-.+.+ -.||+.-...+.+-|...|.++.|.-+|..+..- .
T Consensus 125 ayAk~~rL~elEefl-------------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHHTSCSSSTTTSTT-------------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTT
T ss_pred HHHhhCcHHHHHHHH-------------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 888888866533322 1456666666777777777777777666544100 0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 048807 401 QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVT 480 (757)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 480 (757)
...-..++.||-.+-.+|...+++.-|.-.--.++-. || -...++..|...|.+++-+.+++..... -......
T Consensus 192 aArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGm 265 (624)
T 3lvg_A 192 GARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGM 265 (624)
T ss_dssp TTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHH
T ss_pred HHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHH
Confidence 0001246778999999999998887776554444422 11 2334566788889999988888887743 2347778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC------CHhhHHHHHHHHHhcCChhHHHH
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMSR-AGCSA------DSVVYFTLISGLCQAGRMNDASL 534 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 534 (757)
|+-|.-.|++-. .++..+.++.... .+++. ....|.-++-.|.+-.+++.|..
T Consensus 266 FTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 266 FTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 888888888763 4444444332221 12221 23457777777777777776643
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.12 E-value=5.8 Score=44.93 Aligned_cols=269 Identities=9% Similarity=0.049 Sum_probs=144.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-----CCHhhHHHHHHHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCAN--AVTYTILITAFCNVNNFQEAIKWFDDMSRAGC--S-----ADSVVYFTLISGL 523 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----~~~~~~~~li~~~ 523 (757)
....|+.++++.++...+..+-..+ ...-..+.-+....|..+++..++...+...- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456677777766665544211112 23333444556666666677777777665321 0 1111122233333
Q ss_pred HhcCC-hhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHc
Q 048807 524 CQAGR-MNDASLVVSKLKEAGFRPDIV----CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISF--LSKS 596 (757)
Q Consensus 524 ~~~g~-~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~ 596 (757)
...|. -+++.+.+..+.... +.. .-.++.-.+.-.|+.+....++..+.+.. +..+...++.+ +...
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33343 245566666655532 221 12233344556777777778877776642 33333334444 4467
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HH---HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 597 GNFSAARRVLKKMVKEGLVPTVVT-YG---ALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVEL 672 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~~-~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 672 (757)
|+.+.+..+.+.+... .+... |. ++..+|+..|+.....++++.+.+. ...++.-...+.-++.-.|+.+.
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 8888888888888763 23332 22 3445677788887777788888772 22233333333334445666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 673 ALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNML-DKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 673 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+..+.. ++|..+-..-+-++..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 777776666543 33333333344444444443 678888888863 5666554444444443
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.34 E-value=0.24 Score=47.45 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhcCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc-
Q 048807 634 VDEAMKIFKELSSSSNVSPN---TVIYNILIDSLCKN-----NQVELALSLMEEMKVKEVRP--NTNTYNAMFKGLRQK- 702 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~- 702 (757)
..+|...+++..+ +.|+ ...|..++..|.+. |+.++|.+.|++.++. .| +..++..+.+.+++.
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence 4556666666655 3455 34567777777773 7777777777777763 44 356666666767663
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 048807 703 NMLDKAFKLMDRMIEHACH 721 (757)
Q Consensus 703 g~~~~A~~~~~~~~~~g~~ 721 (757)
|+.++|.+++++.+.....
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 7777777777777765444
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.01 E-value=1 Score=38.09 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=67.3
Q ss_pred ccchHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCcccccCCHh-HHHHHHH------HHHHcCCHHHHHHHHH
Q 048807 328 SVVTFGTIINRLCKLYRA------DEALEVFEKMIAGKETAEISVEPDVI-IFNTLID------GLCKVGKQEEALGLIE 394 (757)
Q Consensus 328 ~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~ 394 (757)
|..+|-..+...-+.|+. ++.+++|++++.. ++|+.. .|...|. .+...++.++|.++|+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-------~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-------LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQ 84 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-------SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-------CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555666666666666777 7777888888775 355421 1111111 1234478888888888
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048807 395 QMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN 442 (757)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 442 (757)
.+... .+.. ...|......-.++|++.+|.+++...+..+.+|.
T Consensus 85 ~a~~~-hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 85 MARAN-CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHH-CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHH-hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 88642 2222 77777777777888888888888888887765543
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.77 E-value=0.0015 Score=66.58 Aligned_cols=237 Identities=13% Similarity=0.058 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHH
Q 048807 147 SINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFY 226 (757)
Q Consensus 147 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~ 226 (757)
|+..|..++.+..+.|.+++-+..+..+.+..+++.+=+.|+-+|++.|++.+-.++. -.||......+-.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl---------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT---------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH---------cCCCcccHHHHHH
Confidence 4455777888888889888888877766666667778888999999998877654433 2355544444444
Q ss_pred HHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 227 ALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR 306 (757)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 306 (757)
.|...+.. +.|.-+ -.++.-|..|..++.+.|++..|.+.- .+. .++.||-.+-.+|..
T Consensus 153 rcf~e~lY------eAAKil---------ys~isN~akLAstLV~L~~yq~AVdaA---rKA---ns~ktWKeV~~ACvd 211 (624)
T 3lvg_A 153 RCYDEKMY------DAAKLL---------YNNVSNFGRLASTLVHLGEYQAAVDGA---RKA---NSTRTWKEVCFACVD 211 (624)
T ss_dssp HHHHSCCS------TTSSTT---------GGGSCCCTTTSSSSSSCSGGGSSTTTT---TTC---CSSCSHHHHTHHHHH
T ss_pred HHHHccCH------HHHHHH---------HHhCccHHHHHHHHHHHHHHHHHHHHH---Hhc---CChhHHHHHHHHHhC
Confidence 44433211 111101 122223556677777888888887543 222 367789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCH
Q 048807 307 EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQ 386 (757)
Q Consensus 307 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 386 (757)
.++|.-|.-.--.++-. +| -...++..|-..|.+++-+.+++..+... ....-.++.|.-.|++- +.
T Consensus 212 ~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-------rAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 212 GKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp SCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-------TCCHHHHHHHHHHHHSS-CT
T ss_pred chHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-------chhHHHHHHHHHHHHhc-CH
Confidence 99999887766666532 22 23346677888999999999999887543 45677888888888875 34
Q ss_pred HHHHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 048807 387 EEALGLIEQMRLRLQKGCMP-------NAVTYNCLINGFCKSGNIEKGLE 429 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 429 (757)
++-.+.++..- ..-.-| ....|.-++-.|++-.+++.|..
T Consensus 279 eKlmEHlklf~---sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 279 QKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHHHTTSS---SSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHH---HhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 44443333221 111111 34458888888888888887753
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.77 E-value=0.83 Score=38.63 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP 616 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 616 (757)
.+++++|.++|+.+.+.+ ..=...|......-.+.|++..|.+++.+.+..+.+|
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 366777777777765542 2225555555555666777777777777777665443
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.98 E-value=9.7 Score=37.10 Aligned_cols=81 Identities=9% Similarity=-0.041 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHH
Q 048807 476 ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA---GRMNDASLVVSKLKEAGFRPDIVCYN 552 (757)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~ 552 (757)
-++.....+...|.+.|++.+|...|-.-. ..+...+..++.-+.+. |...++- ...-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHH
Confidence 367778888888888888888887764111 11344555555444443 4443322 11112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
++ -.|.-.|+...|..+|+...
T Consensus 194 aV-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LV-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHHhcCHHHHHHHHHHHH
Confidence 22 23455678888888777654
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.43 E-value=0.81 Score=37.64 Aligned_cols=83 Identities=8% Similarity=-0.081 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHH
Q 048807 274 KTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKR---MNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A 348 (757)
.+..+.+-|......|. ++..+-..+..++.+..+... ++.+++++.+.+ .| .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555555444 466666667777777665555 777777777654 22 223344455677788888888
Q ss_pred HHHHHHHHhC
Q 048807 349 LEVFEKMIAG 358 (757)
Q Consensus 349 ~~~~~~~~~~ 358 (757)
++.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888774
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.20 E-value=1.1 Score=36.81 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 048807 660 LIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 660 li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
|.-++.+.|++++|.+.++.+++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.13 E-value=2.6 Score=36.40 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=63.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHH
Q 048807 624 LIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-------VIYNILIDSLCKNNQVELALSLMEEMKV--KEVRPNTNTYNA 694 (757)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ 694 (757)
-+..+...|.++.|+-+.+.+....+..|+. .++..+++++...|++.+|...|++.+. +.+..+..+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3455666777777777666654422233331 2455666777777777777777777653 111111111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhchhccCC
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSAAP 756 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 756 (757)
+. ....... .....++...-.-+..++.+.|+.++|...++.+|.+.++
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 10 0000000 0012233444455777888889999999999998877654
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.10 E-value=10 Score=45.04 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048807 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA----VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLI 520 (757)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 520 (757)
-|..++..+.+.+.++.+.++-..+++.....+. ..|..+...+...|++++|...+-.+.... .-......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 3555666666666666666666555543222121 145566666667777777766666555442 2334455555
Q ss_pred HHHHhcCC------------hhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 048807 521 SGLCQAGR------------MNDASLVVSKLKEA--GFRPDIVCYNHLISGFCKKKMLDKAYE-VLQEME 575 (757)
Q Consensus 521 ~~~~~~g~------------~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~ 575 (757)
..++..|+ .++..+++....+. .+...+.-|..|-..+...|++..|-. +|+.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 55554443 34444444332221 111122345555566667777765544 455544
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.66 E-value=2.6 Score=46.74 Aligned_cols=128 Identities=20% Similarity=0.074 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHC------CCCCccc---
Q 048807 262 LTQLITRFCRKGK-TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGD-FKRMNQLFTEMKEN------DIEPSVV--- 330 (757)
Q Consensus 262 ~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p~~~--- 330 (757)
...|+..+...|+ ++.|..+|+++.+.++..+.....+++..+.+.++ --+|.+++.+.++. ..++...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555566 58899999999887644333333444444433332 22455555554421 1122111
Q ss_pred --------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 331 --------TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 331 --------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
....-...+...|+++-|+++-.+.+... |.+-.+|..|..+|.+.|+++.|+-.+..+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11112344567899999999999998863 667899999999999999999999999887
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.05 E-value=8 Score=45.95 Aligned_cols=211 Identities=15% Similarity=0.231 Sum_probs=118.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
++..+.+.+..+-|.++.... +.+......+..+|...|++++|.+.|.+.-. |+..+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~--------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~--------- 879 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL--------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF--------- 879 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC---------
T ss_pred HHHHHHHhhhHHHHHHHhhhc--------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh---------
Confidence 444555566666555544433 33444445556666777777777777765432 111111000
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCh
Q 048807 456 HGRINSAVEFFQEVTRKG--LCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADS----VVYFTLISGLCQAGRM 529 (757)
Q Consensus 456 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~ 529 (757)
..... +..+.... ...-..-|..++..+-+.+.++.+.+.-+..++...+.+. ..|..+...+...|++
T Consensus 880 -~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 880 -AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp -SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred -hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 00000 11111111 1123455777888888999999999888777665322222 2578889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKML------------DKAYEVLQEMED-I-GMTPNSVTYNTLISFLSK 595 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~------------~~A~~~~~~~~~-~-~~~~~~~~~~~li~~~~~ 595 (757)
++|...+-.+..... -......|+...|..|.. ++..+++..-.+ . .......-|..|-.-+..
T Consensus 955 e~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~ 1032 (1139)
T 4fhn_B 955 DAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYK 1032 (1139)
T ss_dssp GGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhc
Confidence 999999888876533 355667777777765544 444445433221 1 111112235555556667
Q ss_pred cCCHHHHHH-HHHHHHh
Q 048807 596 SGNFSAARR-VLKKMVK 611 (757)
Q Consensus 596 ~g~~~~A~~-~~~~m~~ 611 (757)
.|++.+|-. +|+.+.+
T Consensus 1033 r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1033 HQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHTTSCHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHH
Confidence 787776654 4555443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.89 E-value=2.1 Score=47.42 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=26.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 699 LRQKNMLDKAFKLMDRMIEHACHPD-YISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
|...|+++-|+++.++++. +.|+ ..+|..|..+|...|+++.|.=.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3344555555555555554 2332 3555555555555555555555555554
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.76 E-value=3 Score=32.33 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 669 QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 669 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
+.=+..+-++.+....+.|++....+.+.+|.+.+++..|+++++-...+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34456666667777777888888888888888888888888888877665 344445666665
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.52 E-value=29 Score=35.96 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCC--HHH
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKE--GLVPT---VVTYGALIHAFCVNGHVDEAMKIFKELSSS---SNVSPN--TVI 656 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~p~--~~~ 656 (757)
..|...|...|++.+|..++..+... |..+. +..+...+..|...+++.+|..++.++... ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555556666666666666655432 11111 233444455566666666666666554210 111111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555556666666666666666554
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.83 E-value=12 Score=31.43 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 651 SPNTVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
.|+..+--.+.+++.+..+ ..+++.++++....+..-.....-.|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 3555555556666666553 345666666666532111233344455566777777777777777765 35543
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.60 E-value=26 Score=34.40 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 476 ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLI 555 (757)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 555 (757)
-|+.....+...|.+.+++.+|...|- . |..+....+..++.-+.+.+...++ |...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH
Confidence 466777778888888888888887772 2 2222335565555444444332222 222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048807 556 SGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~ 575 (757)
.|...++...|..+++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 3555677888877665554
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.09 E-value=26 Score=34.04 Aligned_cols=80 Identities=10% Similarity=-0.000 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 617 TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN---NQVELALSLMEEMKVKEVRPNTNTYN 693 (757)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 693 (757)
+......+...|.+.|++.+|...|-. +...+...+..++.-+.+. |...++--++-++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~-----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra------------- 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML-----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL------------- 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT-----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------------
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh-----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-------------
Confidence 677788888888888888888887742 1111334444444333333 4443332222221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 048807 694 AMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
+ --|.-.|+...|..+++...
T Consensus 195 -V-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 -V-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -H-HHHHHTTBHHHHHHHHHHHH
T ss_pred -H-HHHHHhcCHHHHHHHHHHHH
Confidence 1 22445567777777766654
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.56 E-value=2.2 Score=43.61 Aligned_cols=70 Identities=13% Similarity=0.007 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCccch
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE-----NDIEPSVVT 331 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 331 (757)
+...++..+...|++++|...+..+...++. +...|..++.+|.+.|+..+|++.|++..+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4456788899999999999999999887755 888999999999999999999999998754 388887654
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.00 E-value=7.7 Score=32.05 Aligned_cols=71 Identities=10% Similarity=0.058 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 652 PNTVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 652 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
|...+--.+..++.+..+ ..+++.++++....+..-....+-.|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 555555556666666654 445777777776543111244555566677778888888888877775 46654
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.54 E-value=13 Score=30.60 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTE 732 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 732 (757)
.=+..+-++.+....+.|++....+.+.+|.+-+++..|+++++-...+ ..+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3355666667777778899999999999999999999999999988775 4455566777763
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.44 E-value=3.8 Score=41.82 Aligned_cols=69 Identities=12% Similarity=-0.015 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK-----EGLVPTVVT 620 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 620 (757)
...++..+...|++++|...+..+.... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445566667777777777777766654 55667777777777777777777777776543 266666554
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.26 E-value=38 Score=34.27 Aligned_cols=167 Identities=10% Similarity=0.007 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHhhH-
Q 048807 443 VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL-C---ANAVTYTILITAFCNV-NNFQEAIKWFDDMSRAGCSADSVVY- 516 (757)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~- 516 (757)
......|...|.+.|+.++..+++......=. - -.......+++.+... +..+.-.++..+..+.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34566677778888888777777766543200 0 1222344555555543 23344444444443321 0011222
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 048807 517 -----FTLISGLCQAGRMNDASLVVSKLKEAGFRPD-----IVCYNHLISGFCKKKMLDKAYEVLQEMEDI--GMTPNSV 584 (757)
Q Consensus 517 -----~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 584 (757)
..++..|...|++.+|..++..+.+.--..| ...+..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2456666677777777666666554311111 123444455666666666666666655422 1112322
Q ss_pred HHHH----HHHHHH-HcCCHHHHHHHHHHHH
Q 048807 585 TYNT----LISFLS-KSGNFSAARRVLKKMV 610 (757)
Q Consensus 585 ~~~~----li~~~~-~~g~~~~A~~~~~~m~ 610 (757)
.... -+-.+. ..+++.+|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2111 112233 4566666666655543
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.24 E-value=9.7 Score=32.87 Aligned_cols=126 Identities=9% Similarity=0.058 Sum_probs=69.8
Q ss_pred CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 048807 578 GMTPNSVTYN--TLISFLSKSGNFSAARRVLKKMVKE-GLVPTV-------VTYGALIHAFCVNGHVDEAMKIFKELSSS 647 (757)
Q Consensus 578 ~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 647 (757)
|+.|....|+ .-+..+...|.++.|+-+.+.++.. +..|+. .++..+.+++...|++..|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444444333 3466678899999999988876542 123442 35677888999999999999999997552
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 648 SNVSPNTV-IYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 648 ~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
...-+... +...+. -...... ......+.+.---+..||.+.|++++|+.+++...
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 22222211 111110 0000000 01122334444447788999999999999988753
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.90 E-value=8.1 Score=30.00 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 048807 598 NFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSS 648 (757)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 648 (757)
+.-+..+-++.+....+.|+..+..+.+.+|.+..++..|.++|+.++...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 444556666666666666777777777777777777777777777666533
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.96 E-value=27 Score=29.18 Aligned_cols=87 Identities=10% Similarity=0.026 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 241 EELVGLVSKFAEH-GVFPNAVWLTQLITRFCRKGKT---DEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 241 ~~~~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
++...+-.+..+. +-.++..+--.+..++.+..+. .+++.+++...+.++.......--|.-++.+.|++++|.+.
T Consensus 20 eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 20 QQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp HHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3333333333333 3356777777777788877654 46888888888765443445566677888899999999999
Q ss_pred HHHHHHCCCCCcc
Q 048807 317 FTEMKENDIEPSV 329 (757)
Q Consensus 317 ~~~m~~~g~~p~~ 329 (757)
.+.+++. .|+.
T Consensus 100 ~d~lL~~--eP~n 110 (144)
T 1y8m_A 100 VDTLFEH--ERNN 110 (144)
T ss_dssp HHHHHHT--CCCC
T ss_pred HHHHHhc--CCCc
Confidence 9988886 4543
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.68 E-value=23 Score=29.28 Aligned_cols=70 Identities=9% Similarity=-0.001 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 254 GVFPNAVWLTQLITRFCRKGKT---DEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 254 g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+-.++..+--.+.-++.+..+. .+++.+++...+.++......+--|.-++.+.|++++|.+..+.+++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3345666666677777777654 467888888887664334556667778888888888888888888875
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.21 E-value=71 Score=32.98 Aligned_cols=177 Identities=10% Similarity=0.072 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCChhHHHHHHHHHHHC--CCCCc
Q 048807 255 VFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNAL----GREGDFKRMNQLFTEMKEN--DIEPS 328 (757)
Q Consensus 255 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~--g~~p~ 328 (757)
......+...++..|...|+++...+.+..+.+.... -...-..++..+ ......+...+ ....+. .+...
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~~d~~~~--~~~i~~l~~vte~ 128 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKSLDLNTR--ISVIETIRVVTEN 128 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCTTHHHHH--HHHHHCCSSSSSC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchhHHHH--HHHHHHHHHHhcc
Confidence 4556667888888888889888887777766654322 122223333222 22222221111 111111 11111
Q ss_pred --------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 048807 329 --------VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 329 --------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 400 (757)
......|...|...|++.+|..++..+...-. ......--+..+...++.|...+++..|..++.++....
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~-~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY-GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 11124456667777777777777777653210 000000013455566677777777777777777653211
Q ss_pred cCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 401 QKG-CMPN--AVTYNCLINGFCKSGNIEKGLELFHLMK 435 (757)
Q Consensus 401 ~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (757)
... .+|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111 1222 2344555666666777777766665554
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.19 E-value=59 Score=30.60 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=42.8
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
...+.|++++|++....-++..|. |...-..++..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455778888888888888877655 7777788888888888888888887777765
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.19 E-value=14 Score=28.62 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=23.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 662 DSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
..+...|++++|..+.+.+. .||.+.|.+|. -.+.|..+++..-+.++-
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHT
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 33445555555555544332 45555554432 244555555555444443
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.39 E-value=17 Score=34.20 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 558 FCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
..+.|++++|++....-++.. |.|...-..|+..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566666666655555553 44555555666666666666666666665555
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.45 E-value=16 Score=30.13 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 048807 598 NFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSS 647 (757)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 647 (757)
|.-+..+-++.+...++.|+..+..+.+.+|.+..++..|.++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445555566666666677777777777777777777777777766653
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.37 E-value=57 Score=29.19 Aligned_cols=170 Identities=11% Similarity=-0.002 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 547 DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626 (757)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (757)
+...-...+..+.+.|.. .+...+.++.. .+|...-...+.++.+.|+. ++...+.+++. .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 444444444555555542 22333333333 23555555555555555543 33344444443 245555556666
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 627 AFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLD 706 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 706 (757)
++.+.|+.+ +...+..+.+ .++...-...+.++.+.|.. ++...+.++.+ .++...-...+.++.+.|. .
T Consensus 104 aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHhCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 666666543 3333333333 25555555556666666553 34445555543 3555555566666666665 4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048807 707 KAFKLMDRMIEHACHPDYISMEILTEWLSEA 737 (757)
Q Consensus 707 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 737 (757)
++...+.++++ .++..+-...+.++...
T Consensus 174 ~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 174 RVRAAMEKLAE---TGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHH---HCCHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHh---CCCHHHHHHHHHHHHhc
Confidence 56666666654 24554444444444443
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.34 E-value=80 Score=30.90 Aligned_cols=167 Identities=13% Similarity=0.149 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCCHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVV----SKLKEAGFRPDIVCYNHLI 555 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~g~~~~~~~~~~li 555 (757)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++. +...+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455666888888888887765432 2345556665554443 5555667778887777777
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 556 SGFCKKKMLD-KAYEVLQEME----DIG--MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 556 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
..+.....-+ .=..+.++++ +.| ..-|......+...|.+.+++.+|...|- . |-.+....+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 7776654321 1122222222 111 22355566667777777777777766662 1 2222334554444444
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
...+...+ ++.+.-.+++ -|.-.++...|..+|+...
T Consensus 178 ~~~~~~~e---------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHT---------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGG---------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcc---------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 33332111 1222222222 3445567777777665554
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.81 E-value=1.2e+02 Score=32.76 Aligned_cols=335 Identities=11% Similarity=0.032 Sum_probs=152.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC 413 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 413 (757)
.-+..+.+.+++..-+..+.. .+.+...-.....+....|+..+|......+= ..+ ......+..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-----------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW---~~~-~~~p~~c~~ 141 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-----------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW---LTG-KSQPNACDK 141 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-----------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH---SCS-SCCCTHHHH
T ss_pred HHHHHHHhCCCHHHHHHhccC-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH---hCC-CCCcHHHHH
Confidence 334455556665554443321 13455555556666777777777766666552 333 233445666
Q ss_pred HHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH--------
Q 048807 414 LINGFCKSGNIE--KGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTI-------- 483 (757)
Q Consensus 414 li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------- 483 (757)
++..+.+.|.+. ...+=++.+...| +...-..++... . .......+.+..+.+. +++......
T Consensus 142 l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~ 214 (618)
T 1qsa_A 142 LFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN--PNTVLTFARTTGATDFT 214 (618)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhh
Confidence 666666655432 2333333344432 222222222211 0 1111111112222222 112111100
Q ss_pred ------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH----HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048807 484 ------LITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLIS----GLCQAGRMNDASLVVSKLKEAGFRPDIVCYNH 553 (757)
Q Consensus 484 ------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 553 (757)
.+.-+. ..+.+.|...+....+.. ..+......+-. .+...+...++...+....... .+.....-
T Consensus 215 ~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 290 (618)
T 1qsa_A 215 RQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIER 290 (618)
T ss_dssp HHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHH
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHH
Confidence 111122 235667777776665433 222222222222 2222332445555555544332 23222223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (757)
.+....+.|+++.|...|..|.... .......--+..++...|+.++|..+|.++... . +|-.++ +..+.|.
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~l-Aa~~Lg~ 362 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMV-AAQRIGE 362 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHH-HHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHH-HHHHcCC
Confidence 3333445677777777777765432 123333445566666777777777777777642 1 222222 1222332
Q ss_pred HHHHHHHHHHhhhcCCCCC---CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 634 VDEAMKIFKELSSSSNVSP---NTV---IYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDK 707 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p---~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 707 (757)
.-.. .. ....+ ... .-...+..+...|....|...+..+... .+......+.......|..+.
T Consensus 363 ~~~~-------~~-~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~ 431 (618)
T 1qsa_A 363 EYEL-------KI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDL 431 (618)
T ss_dssp CCCC-------CC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCC-------CC-CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHH
Confidence 1000 00 00000 110 1123345677888889998888887753 233434455555566777776
Q ss_pred HHHHHH
Q 048807 708 AFKLMD 713 (757)
Q Consensus 708 A~~~~~ 713 (757)
++....
T Consensus 432 ~v~~~~ 437 (618)
T 1qsa_A 432 SVQATI 437 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.99 E-value=37 Score=34.97 Aligned_cols=64 Identities=6% Similarity=-0.081 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 372 IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
+...+...|.+.|++++|.+.+.++... ..+...-...+..+++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677888899999999999999888643 223333466777888888888888888888877653
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.94 E-value=33 Score=30.69 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048807 669 QVELALSLMEEMKVKEVRPN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHP 722 (757)
Q Consensus 669 ~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 722 (757)
+..++.++|..|..+|+--. ..-|......+...|++++|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34455555555555444332 2344455555555555555555555555554444
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.34 E-value=41 Score=34.64 Aligned_cols=102 Identities=11% Similarity=-0.031 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT 410 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (757)
++..+...|.+.|++++|.+.+.++...-. +...-...+-.+++.+...+++..+...+.++......+..++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAI----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHT----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 455666777777777777777777664320 0122355677788888888999999888888764434443333221
Q ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 411 Y--NCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 411 ~--~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
. ..-+..+...+++.+|.+.|-+...
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1 1112223456778887777766554
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.60 E-value=13 Score=28.63 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 633 HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLM 712 (757)
Q Consensus 633 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (757)
..++|..+-+-+.. .+. ...+-.+-+..+...|++++|..+.+.+ ..||.+.|.+| +-.+.|..+++..-+
T Consensus 21 ~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLER-LGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 34555555555444 221 1222222233445556666665554433 24555555443 234555555555555
Q ss_pred HHHHH
Q 048807 713 DRMIE 717 (757)
Q Consensus 713 ~~~~~ 717 (757)
.++-.
T Consensus 92 ~~la~ 96 (115)
T 2uwj_G 92 AGLGG 96 (115)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44443
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.98 E-value=1.3e+02 Score=30.27 Aligned_cols=167 Identities=12% Similarity=-0.002 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHH-
Q 048807 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM--PNAVTYNCLINGFCKS-GNIEKGLELFHLMKQEGVTPNVVTL- 446 (757)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~- 446 (757)
.+...|...|.+.|+.++..+++...+.- ...++ ........+++.+... +..+.-.++..+..+..-. +-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPF-LSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTG-GGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34567889999999999999998876421 01111 1233455666666553 3344444444444332100 11122
Q ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHh
Q 048807 447 -----NTLVDGMCRHGRINSAVEFFQEVTRKGLCAN-----AVTYTILITAFCNVNNFQEAIKWFDDMSRA--GCSADSV 514 (757)
Q Consensus 447 -----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~ 514 (757)
..++..|...|++.+|.+++.++.+.-...| ..++..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2567777788888888777777665311111 234455566777777777777777665432 1112222
Q ss_pred hH--HHHHH--HHH-hcCChhHHHHHHHHH
Q 048807 515 VY--FTLIS--GLC-QAGRMNDASLVVSKL 539 (757)
Q Consensus 515 ~~--~~li~--~~~-~~g~~~~A~~~~~~~ 539 (757)
.. -.... .+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 11111 233 566677766655544
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=62.16 E-value=1.8e+02 Score=31.48 Aligned_cols=200 Identities=6% Similarity=-0.027 Sum_probs=109.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 048807 384 GKQEEALGLIEQMRLRLQKGCMPNAVTY----NCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRI 459 (757)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (757)
.+.+.|...+..... .. ..+.... ..++......+...++...+....... .+.....-.+....+.|++
T Consensus 228 ~d~~~A~~~~~~~~~---~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 QDAENARLMIPSLAQ---AQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HCHHHHHHHHHHHHH---HT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHhhhh---cc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCH
Confidence 377889999888742 11 2232222 223333334453556666777655442 3443344445555678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 460 NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKL 539 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (757)
+.|...|..|...... ......-+..++.+.|+.++|..+|..+.+. . +|..++.+ .+.|..-..
T Consensus 302 ~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~~~------- 366 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEYEL------- 366 (618)
T ss_dssp HHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCCCC-------
T ss_pred HHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCCCC-------
Confidence 9999999888664222 3444455677888899999999999988752 1 33333321 222321000
Q ss_pred HHCCCCC---CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048807 540 KEAGFRP---DIV---CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLK 607 (757)
Q Consensus 540 ~~~g~~~---~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (757)
....+.+ ... .-...+..+...|....|...+..+.+.. +......+.......|..+.++....
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~---~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0000000 000 01123445667788888888777776542 33333344444556677776665443
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=58.59 E-value=61 Score=25.05 Aligned_cols=6 Identities=50% Similarity=0.302 Sum_probs=2.2
Q ss_pred CChhHH
Q 048807 343 YRADEA 348 (757)
Q Consensus 343 g~~~~A 348 (757)
|++++|
T Consensus 53 G~Yq~A 58 (115)
T 2uwj_G 53 GRYQEA 58 (115)
T ss_dssp TCHHHH
T ss_pred hhHHHH
Confidence 333333
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.41 E-value=1e+02 Score=27.46 Aligned_cols=122 Identities=16% Similarity=0.022 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 547 DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626 (757)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (757)
+...-...+.++.+.+..+ +...+..+.. .++...-...+.++.+.|+. ++...+.++++ .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHH
Confidence 4444444444455544432 2233333332 24555555555555655553 23444444443 255555555566
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 627 AFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
++...|..+ +...+..+.+ .++..+-...+.++.+.+. .++...+.++.+
T Consensus 135 aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 666665533 3333333333 2455555555666666555 445555555544
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=57.80 E-value=64 Score=25.00 Aligned_cols=9 Identities=22% Similarity=-0.023 Sum_probs=3.3
Q ss_pred cCChhHHHH
Q 048807 342 LYRADEALE 350 (757)
Q Consensus 342 ~g~~~~A~~ 350 (757)
.|++++|..
T Consensus 53 rG~Yq~Al~ 61 (116)
T 2p58_C 53 RGDYASALQ 61 (116)
T ss_dssp TTCHHHHHH
T ss_pred chhHHHHHH
Confidence 333333333
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.07 E-value=76 Score=26.90 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 671 ELALSLMEEMKVKEVRPN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 671 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
+++.++|..|..+|+--. ..-|......+...|++++|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 347888888888776554 446777778888889999999999888887777743
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.85 E-value=1.2e+02 Score=26.77 Aligned_cols=138 Identities=10% Similarity=0.011 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 048807 582 NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILI 661 (757)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 661 (757)
+...-...+.++.+.|.. ++...+.+++. .++..+....+.++.+.|+.+. ...+..+.. .++...-...+
T Consensus 58 ~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~----d~~~~vr~~a~ 128 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK----DEDWFVRIAAA 128 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc----CCCHHHHHHHH
Confidence 444444445555555543 23333334443 2455555555666666655432 223333322 24555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 662 DSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
.++.+.|.. ++...+.++.. .++...-...+.++.+.|. .++...+..+++. ++..+-...+.++.+
T Consensus 129 ~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 129 FALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 566655542 34444444443 3455555556666666655 4455556666542 444444444444433
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.93 E-value=1.3e+02 Score=26.82 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 529 MNDASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTP 581 (757)
Q Consensus 529 ~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 581 (757)
..++..+|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4466666666666554432 3345555666666666666666666666555444
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.23 E-value=1.1e+02 Score=26.42 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 672 LALSLMEEMKVKEVRPN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 672 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
++.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 36677888877766544 345667777777788888888888888877767754
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.01 E-value=1.5e+02 Score=27.34 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=48.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMP----NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVD 451 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (757)
-++.+....++++|.+++++.+.... +.++ +.......+..-.....-.-+..+.+.+.. .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~-~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLE-DLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH-hCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 45678888999999999988764422 2221 111222223333332333333334444422 334555666666
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 048807 452 GMCRHGRINSAVEFFQEVT 470 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~ 470 (757)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7777777777777665543
No 281
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.05 E-value=2.5e+02 Score=32.25 Aligned_cols=48 Identities=10% Similarity=0.035 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 048807 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAV----TYTILITAFCNVN 492 (757)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g 492 (757)
-|..++..+.+.+.++-+.++-+.+++.--..|.. .|+.+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 67889999999999999999888888753333433 5677777777655
No 282
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.35 E-value=3e+02 Score=27.14 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCH
Q 048807 621 YGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQ--VELALSLMEEMKVKEVRPNT 689 (757)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 689 (757)
...++.-|...|+.++|.+.++++.. .... ...+...+..++-+.++ .+...+++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~-p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC-TTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC-Ccch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 46778888889999999999988865 1111 23345555555555433 45577777777776654433
No 283
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.13 E-value=2e+02 Score=24.80 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=26.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 594 SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
.-.|.+..++-++...- ..+..-|.. -+|-+..++..|...++.+.+
T Consensus 44 yyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~ 90 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILE 90 (242)
T ss_dssp HHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHT
T ss_pred hhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 34577777665553221 011122222 246677788888888877775
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.99 E-value=1.4e+02 Score=26.95 Aligned_cols=190 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHH--HHHHHH
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCN--ALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFG--TIINRL 339 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~ 339 (757)
+.+...++.|+.+....+++...+.+..++..... +.+...+..|+. ++++.+.+.|..++..... +.+...
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHH
Q ss_pred HhcCChhHHHHHHHHHH----hCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 340 CKLYRADEALEVFEKMI----AGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
+..|+.+-...+++... . +..........+...+..|+.+-...+++.- ..-...+...-.+.+
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~--------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~~g~t~L 154 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLD--------LEARNYDGLTALHVAVNTECQETVQLLLERG----ADIDAVDIKSGRSPL 154 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCC--------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTTCCCHH
T ss_pred HHcCCHHHHHHHHHcCCCcccc--------ccccCcCCCcHHHHHHHcCCHHHHHHHHHcC----CCcccccccCCCcHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLN--TLVDGMCRHGRINSAVEFFQEVTRKGLCAN 477 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 477 (757)
...+..|+.+ +++.+.+.|..++..... +.+...+..|+.+ +.+.+++.|..++
T Consensus 155 ~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 155 IHAVENNSLS----MVQLLLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHTTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.56 E-value=1e+02 Score=28.00 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 671 ELALSLMEEMKVKEVRPN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 671 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
+++..+|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 467788888888776554 446677777888888888888888888887777743
No 286
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=34.32 E-value=3.3e+02 Score=26.35 Aligned_cols=49 Identities=8% Similarity=0.046 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 670 VELALSLMEEMKVKEVRPNTN--TYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
..+.+++---+....+.|... ++..-+....+.+++..|..+.+++++.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444444444444332 3344455556666666666666666654
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.85 E-value=3.6e+02 Score=30.97 Aligned_cols=131 Identities=12% Similarity=0.138 Sum_probs=77.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
++..+...|..+-|.++...+ +.+...-..+..+|...|++++|.+.|+++-. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~--------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL--------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC--------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG-------
T ss_pred HHHHHHHhcHHHHHHHHHhhc--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc-------
Confidence 556666777777666554433 44555555678888999999999999987542 33221110000
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcC
Q 048807 456 HGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADS----VVYFTLISGLCQAG 527 (757)
Q Consensus 456 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g 527 (757)
.+....++.... . ......-|..++..+-+.+.++.+.++-+..++.--..|. ..|..+.++.+..|
T Consensus 880 ---~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 ---LREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ---GHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---hhhhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 001111111110 0 1112346778888999999999999988888764323333 35677777766654
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.42 E-value=95 Score=29.00 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=44.0
Q ss_pred HHHHHHhCCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHH
Q 048807 246 LVSKFAEHGVFPNAV---WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEA---ASCNALLNALGREGDFKRMNQLFTE 319 (757)
Q Consensus 246 ~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~ 319 (757)
++..+++.|..++.. ...+.+...++.|+.+-...+ .+.|..++. ..++ .+...+..|+.+ +++.
T Consensus 20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~ 90 (285)
T 1wdy_A 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL----LRHGADPVLRKKNGAT-PFLLAAIAGSVK----LLKL 90 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCC-HHHHHHHHTCHH----HHHH
T ss_pred HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCC-HHHHHHHcCCHH----HHHH
Confidence 344455555543321 112345556677886554444 444544332 1222 233344556654 4455
Q ss_pred HHHCCCCCccc---hHHHHHHHHHhcCChhHHHH
Q 048807 320 MKENDIEPSVV---TFGTIINRLCKLYRADEALE 350 (757)
Q Consensus 320 m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~ 350 (757)
+.+.|..++.. .++ .+...+..|+.+-...
T Consensus 91 Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~ 123 (285)
T 1wdy_A 91 FLSKGADVNECDFYGFT-AFMEAAVYGKVKALKF 123 (285)
T ss_dssp HHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHH
Confidence 55566555432 222 3344456676544333
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.44 E-value=2.1e+02 Score=23.27 Aligned_cols=64 Identities=13% Similarity=0.231 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCC
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGN--IEKGLELFHLMKQEGVT 440 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 440 (757)
...++.-|...|+.++|.+.++++. ............+..++-+.++ .+....++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~----~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC----CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567777888888888888888873 1111112233333444444332 34566667666666543
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.43 E-value=5.4e+02 Score=27.94 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
-.+|-.+.++|.+++|.++.++.. .....-...+...+..|+.
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~----~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENK----ANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTG----GGC-----CHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhh----hhHhhhhHHHHHHHHHHHh
Confidence 356778889999999999998763 1111112345555566653
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.09 E-value=1.4e+02 Score=28.81 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567888989999999999988864
No 292
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.89 E-value=2.8e+02 Score=24.13 Aligned_cols=122 Identities=16% Similarity=0.023 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 547 DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626 (757)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (757)
+...-...+.++...|..+ +...+..+.. .++...-...+.++.+.|+.+ +...+.+++. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444455555555432 2333333332 245555556666666666543 3444444443 356666666666
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 627 AFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
++.+.|..+ +...+..+.. .++..+-...+.++.+.|. +++...+..+..
T Consensus 130 aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 130 ALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHTCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 666666533 3334444433 1455555566666666665 345555555554
No 293
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.79 E-value=5e+02 Score=27.10 Aligned_cols=64 Identities=11% Similarity=-0.033 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---CCCcc---hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 048807 147 SINSATLLIRFFGKVSMYDYSLLVYNELDNN---LRNTH---VRNVLIDVLLRCDHDRDAFNVLDEMLDR 210 (757)
Q Consensus 147 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 210 (757)
-....|.+++.|...+.++.|..+..+..-. .+|.. -..-++..+.-.+++.+|.+.|....+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3467899999999999999999999987521 11111 1234678888899999999999998764
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.39 E-value=72 Score=30.87 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLM 286 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~ 286 (757)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567888999999999999988864
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.44 E-value=1.8e+02 Score=24.50 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCC
Q 048807 372 IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGN--IEKGLELFHLMKQEGVT 440 (757)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 440 (757)
..+.++.-|...|+.++|.+.++++. ........+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~----~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34567777888888888888888873 1111112233333444443222 34556666666665543
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.26 E-value=78 Score=28.66 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=8.1
Q ss_pred HHHHHHHcCChhHHHHH
Q 048807 265 LITRFCRKGKTDEAWDV 281 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~ 281 (757)
.+...++.|+.+-+..+
T Consensus 45 ~L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 34444556665444333
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.06 E-value=3.3e+02 Score=24.98 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=19.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 048807 414 LINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46788889999999999887764
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.98 E-value=2.7e+02 Score=23.46 Aligned_cols=50 Identities=18% Similarity=0.046 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 532 ASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTP 581 (757)
Q Consensus 532 A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 581 (757)
+..+|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555444322 2334444445555555555555555555444333
No 299
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.91 E-value=4.5e+02 Score=25.92 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCH
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNM--LDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~~ 724 (757)
...++.-|...|+.+||...++++....+. .......+..++-+.++ .+...+++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 567888899999999999999998632111 12334455555554433 34566777777766554433
No 300
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.76 E-value=3.2e+02 Score=24.23 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048807 527 GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK 562 (757)
Q Consensus 527 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 562 (757)
.+.+.|+-.+.+|++.| .|.-..-..++.+...-|
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 45555555555555555 444333344444444333
No 301
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.32 E-value=51 Score=22.00 Aligned_cols=37 Identities=11% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHhhchh
Q 048807 711 LMDRMIEHACHPDYISMEILTEWLSEAGQ--TEKLKKFVQGYAV 752 (757)
Q Consensus 711 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~ 752 (757)
.++.+++.|++++. ...++.+.|+ ++.|.+++.+|..
T Consensus 12 mlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 12 MLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp HHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhcC
Confidence 34444555555432 2234555555 6777777776643
No 302
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=27.07 E-value=1.1e+02 Score=20.21 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 048807 242 ELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLH 283 (757)
Q Consensus 242 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (757)
.+...+.+|...|+..+.-+.+.|+. .+.|+...|+++++
T Consensus 9 rl~~al~qMl~MGF~negGWLt~LL~--~k~gDI~~aLD~lq 48 (52)
T 1q02_A 9 RLIESLSQMLSMGFSDEGGWLTRLLQ--TKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHTTTCCCTTSHHHHHHH--HTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCccccHHHHHHH--HccCCHHHHHHHhh
Confidence 45556778888888877777777765 37888888887654
No 303
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.33 E-value=7.6e+02 Score=28.05 Aligned_cols=88 Identities=9% Similarity=0.040 Sum_probs=36.6
Q ss_pred HHHHHHHHcCC---hhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 264 QLITRFCRKGK---TDEAWDVLHVLMKFD----APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 264 ~li~~~~~~g~---~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.++...|+.|. .++|.+.|+.....+ ++||.. ..+...-.+.|.-++-..+++...... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 34555555554 234555555554321 223321 111222223444444444444444432 222233444
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMI 356 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~ 356 (757)
.+++-..+.+...++++..+
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHh
Confidence 45544445444444444443
No 304
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.23 E-value=3.9e+02 Score=27.92 Aligned_cols=62 Identities=11% Similarity=0.066 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc------chH-HHHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV------VTF-GTIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~-~~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
...+|.+++.|...+.++.|..+..+..- +.+. .+| ..+...+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46677777888888888888887776641 1111 112 22344556677888888888877664
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.23 E-value=2.8e+02 Score=22.56 Aligned_cols=64 Identities=17% Similarity=0.366 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 048807 621 YGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQ--VELALSLMEEMKVKEVR 686 (757)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 686 (757)
...++.-|...|+.++|.+.++++.. ... -...+...+..++-+.++ .+....++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV-PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC-GGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-Ccc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34566667777777777777777643 111 122334444444444332 34566666666655443
No 306
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.15 E-value=76 Score=21.80 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHCCCCCccchHHHHHHHH-Hh
Q 048807 310 FKRMNQLFTEMKENDIEPSVVTFGTIINRL-CK 341 (757)
Q Consensus 310 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~ 341 (757)
.++|.+.|.+|++..-.+...||...+..+ ++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~ 34 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTR 34 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccC
Confidence 467888888887765556677888877776 54
No 307
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.68 E-value=1.8e+02 Score=26.97 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=5.0
Q ss_pred HHHHHHHHHCCC
Q 048807 533 SLVVSKLKEAGF 544 (757)
Q Consensus 533 ~~~~~~~~~~g~ 544 (757)
..+.+.+.+.|.
T Consensus 199 ~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 199 EAITHLLLDHGA 210 (285)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 334444444443
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.41 E-value=3.7e+02 Score=23.82 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHHHcC
Q 048807 492 NNFQEAIKWFDDMSRAG 508 (757)
Q Consensus 492 g~~~~A~~~~~~m~~~~ 508 (757)
.+.+.|+-.+-+|++.|
T Consensus 21 SDpDAAly~LaRMl~~G 37 (201)
T 3bge_A 21 SAPDAALYWYARILTAG 37 (201)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.98 E-value=1.2e+02 Score=26.38 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=8.7
Q ss_pred HHHcCChhHHHHHHH
Q 048807 269 FCRKGKTDEAWDVLH 283 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~ 283 (757)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345666666655554
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.30 E-value=96 Score=28.01 Aligned_cols=6 Identities=17% Similarity=-0.047 Sum_probs=2.4
Q ss_pred hcCCHH
Q 048807 490 NVNNFQ 495 (757)
Q Consensus 490 ~~g~~~ 495 (757)
..|+.+
T Consensus 186 ~~~~~~ 191 (240)
T 3eu9_A 186 LAGNTT 191 (240)
T ss_dssp HHTCHH
T ss_pred HcCCHH
Confidence 344433
No 311
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.26 E-value=4.5e+02 Score=24.30 Aligned_cols=235 Identities=12% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----hhHHHHHHHHHHHCCCCCCHHH
Q 048807 475 CANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR----MNDASLVVSKLKEAGFRPDIVC 550 (757)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~g~~~~~~~ 550 (757)
.++..+-...+..+.+.|..+....+.+.+... +...-...+.++.+.|. ......++..+... .++...
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~v 107 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACV 107 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHH
Q ss_pred HHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 551 YNHLISGFCKKKM-----LDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625 (757)
Q Consensus 551 ~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (757)
-...+.++.+.+. ...+...+..+.. .++..+-...+.++.+.|+ .++...+.++.+ .++..+....+
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~ 180 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVRNWAA 180 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHHHHHH
Q ss_pred HHHHhcC--CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 626 HAFCVNG--HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 626 ~~~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
.++...| ..+-...+.+.+.. ++..+-...+.++.+.|+.+-.-.+.+.+.+ ++ .-...+.++.+.|
T Consensus 181 ~aL~~~~~~~~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 181 FAININKYDNSDIRDCFVEMLQD-----KNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHC
T ss_pred HHHHhhccCcHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcC
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 704 MLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 704 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
. .++...+.++++. .++.......+..+.+
T Consensus 250 ~-~~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 250 D-KTLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp C-GGGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred c-hhhhHHHHHHHhc--CCCcHHHHHHHHHhhc
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.01 E-value=2.7e+02 Score=25.28 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 530 NDASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTP 581 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 581 (757)
+++..+|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345556666665554432 3345555555566666666666666655554444
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.64 E-value=3.6e+02 Score=23.04 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 532 ASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTP 581 (757)
Q Consensus 532 A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 581 (757)
+..+|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555555544322 2344455555555555555555555555554444
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.76 E-value=7e+02 Score=25.61 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=59.4
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc
Q 048807 251 AEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV 330 (757)
Q Consensus 251 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 330 (757)
.+.|++.-...|..-.+.+...|++++|-++--...+ |.-.+..|.+.+-.+=..-|+..--+.+|..+.+.| ..+..
T Consensus 353 ~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ 430 (494)
T 1bpo_A 353 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKY 430 (494)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHH
T ss_pred HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchH
Confidence 4556776666677777888888999888887766543 344466676666555555566677777777777776 34433
Q ss_pred hHHHHHHHHHhcCChhH
Q 048807 331 TFGTIINRLCKLYRADE 347 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~ 347 (757)
--.-+++.-...|+.+-
T Consensus 431 ESlEl~r~vL~q~r~~l 447 (494)
T 1bpo_A 431 ESLELCRPVLQQGRKQL 447 (494)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HhhHHhHHHHhccHHHH
Confidence 22334444444455433
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.27 E-value=2.4e+02 Score=23.80 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 622 GALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555566666666665553
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.24 E-value=3.2e+02 Score=22.78 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 285 LMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 285 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
+.+.|.. ....-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3444544 3344445556666666666777777777766544455555555555555553
Done!