Query 048809
Match_columns 878
No_of_seqs 458 out of 4181
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-58 2.7E-63 537.9 23.3 530 2-644 288-843 (889)
2 PLN03210 Resistant to P. syrin 100.0 1E-52 2.2E-57 517.7 38.9 563 1-839 322-911 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.6E-33 3.4E-38 349.0 27.4 501 227-841 69-591 (968)
4 PLN00113 leucine-rich repeat r 100.0 6.7E-33 1.5E-37 343.4 25.8 496 249-856 69-582 (968)
5 PF00931 NB-ARC: NB-ARC domain 99.9 1.3E-23 2.9E-28 222.4 6.0 147 2-155 128-285 (287)
6 KOG0618 Serine/threonine phosp 99.9 2.4E-24 5.2E-29 237.0 -3.4 263 514-854 218-485 (1081)
7 PLN03210 Resistant to P. syrin 99.9 1.1E-20 2.4E-25 234.1 28.4 176 225-418 556-754 (1153)
8 KOG4194 Membrane glycoprotein 99.9 1.4E-22 3.1E-27 211.7 6.9 368 226-670 51-428 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 1.7E-25 3.7E-30 223.4 -14.5 485 228-833 46-540 (565)
10 KOG0618 Serine/threonine phosp 99.8 1.4E-23 3.1E-28 231.1 -6.8 130 657-806 358-488 (1081)
11 KOG0444 Cytoskeletal regulator 99.8 4.5E-23 9.8E-28 216.4 -4.0 320 225-647 53-379 (1255)
12 KOG0472 Leucine-rich repeat pr 99.8 1.4E-23 3E-28 209.9 -10.6 175 540-741 360-537 (565)
13 KOG4194 Membrane glycoprotein 99.8 1.2E-20 2.7E-25 197.3 4.7 328 226-613 101-448 (873)
14 KOG0444 Cytoskeletal regulator 99.8 3.6E-21 7.8E-26 202.3 -3.4 171 225-420 5-182 (1255)
15 KOG0617 Ras suppressor protein 99.5 1.4E-16 3E-21 141.5 -5.1 166 220-410 26-195 (264)
16 KOG4341 F-box protein containi 99.4 2.1E-15 4.6E-20 153.1 -6.8 315 515-853 138-460 (483)
17 KOG0617 Ras suppressor protein 99.4 7E-15 1.5E-19 130.8 -2.9 156 239-419 23-181 (264)
18 KOG4341 F-box protein containi 99.4 2.1E-15 4.6E-20 153.1 -7.0 273 513-811 162-443 (483)
19 KOG4237 Extracellular matrix p 99.4 1.4E-14 3.1E-19 145.8 -2.7 114 232-346 51-169 (498)
20 KOG4658 Apoptotic ATPase [Sign 99.4 2.3E-13 4.9E-18 160.2 6.3 119 227-346 545-670 (889)
21 PRK15387 E3 ubiquitin-protein 99.4 7.1E-12 1.5E-16 144.3 17.1 94 231-334 205-298 (788)
22 PRK15370 E3 ubiquitin-protein 99.4 3.3E-12 7.2E-17 148.2 13.0 101 228-336 179-280 (754)
23 PRK15387 E3 ubiquitin-protein 99.3 1.7E-11 3.6E-16 141.3 17.6 249 216-558 212-460 (788)
24 PRK15370 E3 ubiquitin-protein 99.3 7.5E-12 1.6E-16 145.2 11.1 153 216-405 189-342 (754)
25 KOG4237 Extracellular matrix p 99.1 1E-11 2.2E-16 125.6 -1.2 131 215-346 56-193 (498)
26 PF14580 LRR_9: Leucine-rich r 99.0 3.2E-10 6.9E-15 107.0 4.6 119 226-346 18-145 (175)
27 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 5E-15 107.9 3.1 95 235-332 5-102 (175)
28 KOG0532 Leucine-rich repeat (L 98.9 1.9E-10 4.1E-15 121.8 -1.5 167 227-408 75-254 (722)
29 KOG0532 Leucine-rich repeat (L 98.8 2.6E-10 5.7E-15 120.8 -3.3 174 231-420 54-243 (722)
30 KOG1259 Nischarin, modulator o 98.7 1.1E-09 2.3E-14 106.9 -1.1 121 224-346 281-404 (490)
31 cd00116 LRR_RI Leucine-rich re 98.7 6.4E-09 1.4E-13 112.2 1.6 103 229-331 25-150 (319)
32 cd00116 LRR_RI Leucine-rich re 98.6 2.5E-08 5.3E-13 107.6 4.7 33 387-419 249-286 (319)
33 PF13855 LRR_8: Leucine rich r 98.6 3.8E-08 8.3E-13 76.1 3.1 60 249-308 1-61 (61)
34 KOG1259 Nischarin, modulator o 98.5 2.3E-08 5.1E-13 97.7 1.7 170 225-419 212-407 (490)
35 COG4886 Leucine-rich repeat (L 98.5 7.2E-08 1.6E-12 107.1 5.3 167 228-420 117-286 (394)
36 COG4886 Leucine-rich repeat (L 98.5 8.8E-08 1.9E-12 106.4 5.8 170 231-425 97-269 (394)
37 PRK15386 type III secretion pr 98.5 2.5E-07 5.5E-12 98.0 7.7 70 657-766 51-120 (426)
38 PRK15386 type III secretion pr 98.4 3.4E-07 7.3E-12 97.0 4.7 136 705-854 49-186 (426)
39 KOG3207 Beta-tubulin folding c 98.3 2E-07 4.2E-12 96.5 1.5 13 755-767 298-310 (505)
40 PF13855 LRR_8: Leucine rich r 98.3 4.4E-07 9.6E-12 70.1 3.0 58 273-330 1-61 (61)
41 KOG2120 SCF ubiquitin ligase, 98.3 2.3E-08 4.9E-13 97.9 -5.2 111 543-670 186-298 (419)
42 KOG1947 Leucine rich repeat pr 98.3 2.2E-08 4.8E-13 114.9 -7.2 119 541-671 187-308 (482)
43 KOG3207 Beta-tubulin folding c 98.2 1.9E-07 4.1E-12 96.6 -0.2 104 225-328 119-232 (505)
44 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.8E-11 61.6 3.5 42 273-314 1-42 (44)
45 KOG2120 SCF ubiquitin ligase, 98.1 8.8E-08 1.9E-12 93.9 -5.4 186 604-833 185-375 (419)
46 KOG0531 Protein phosphatase 1, 98.1 3.5E-07 7.7E-12 101.6 -1.5 87 247-335 93-179 (414)
47 KOG1947 Leucine rich repeat pr 98.0 5.2E-07 1.1E-11 103.5 -3.1 70 565-644 240-309 (482)
48 PLN03150 hypothetical protein; 97.9 1.6E-05 3.4E-10 92.7 7.4 89 250-339 419-512 (623)
49 PLN03150 hypothetical protein; 97.8 3.5E-05 7.5E-10 89.9 8.0 99 229-328 420-525 (623)
50 KOG1644 U2-associated snRNP A' 97.8 2.9E-05 6.4E-10 72.5 5.7 101 228-328 43-150 (233)
51 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.3E-10 54.7 3.9 40 296-335 1-41 (44)
52 KOG0531 Protein phosphatase 1, 97.8 6E-06 1.3E-10 91.8 0.2 106 225-333 93-201 (414)
53 KOG1859 Leucine-rich repeat pr 97.7 1.3E-06 2.8E-11 95.8 -6.5 118 226-346 163-284 (1096)
54 KOG3665 ZYG-1-like serine/thre 97.6 1.9E-05 4.1E-10 91.6 1.6 134 226-365 121-263 (699)
55 KOG1859 Leucine-rich repeat pr 97.4 4.7E-06 1E-10 91.6 -6.9 107 224-332 184-293 (1096)
56 KOG1644 U2-associated snRNP A' 97.4 0.00021 4.6E-09 66.9 4.9 103 230-334 22-129 (233)
57 KOG3665 ZYG-1-like serine/thre 97.4 7E-05 1.5E-09 87.0 2.0 52 294-346 146-200 (699)
58 KOG4579 Leucine-rich repeat (L 97.3 1.7E-05 3.7E-10 69.1 -2.9 90 247-336 51-141 (177)
59 KOG2982 Uncharacterized conser 97.3 0.00015 3.2E-09 71.8 2.6 101 231-331 49-159 (418)
60 KOG2982 Uncharacterized conser 97.2 7.7E-05 1.7E-09 73.8 0.2 60 270-329 68-132 (418)
61 KOG4579 Leucine-rich repeat (L 97.2 4.1E-05 8.9E-10 66.8 -2.1 82 229-311 55-138 (177)
62 KOG1909 Ran GTPase-activating 97.1 0.00014 3.1E-09 73.8 0.5 108 226-333 29-172 (382)
63 KOG1909 Ran GTPase-activating 97.1 0.00016 3.4E-09 73.5 0.6 106 226-331 156-283 (382)
64 KOG2739 Leucine-rich acidic nu 96.8 0.0006 1.3E-08 67.0 1.6 64 269-332 61-130 (260)
65 COG5238 RNA1 Ran GTPase-activa 96.4 0.00045 9.7E-09 67.6 -1.5 138 270-419 55-222 (388)
66 KOG2739 Leucine-rich acidic nu 96.4 0.0015 3.3E-08 64.2 2.0 102 226-328 42-153 (260)
67 KOG3864 Uncharacterized conser 96.0 0.00079 1.7E-08 63.3 -2.4 65 602-670 123-188 (221)
68 PRK04841 transcriptional regul 95.9 0.07 1.5E-06 66.5 13.5 171 3-201 152-332 (903)
69 PF00560 LRR_1: Leucine Rich R 95.8 0.003 6.5E-08 36.9 0.4 22 274-295 1-22 (22)
70 KOG3864 Uncharacterized conser 95.8 0.0013 2.8E-08 61.9 -1.8 87 710-807 103-189 (221)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0077 1.7E-07 35.2 0.8 22 319-340 1-22 (22)
72 KOG2123 Uncharacterized conser 95.2 0.0015 3.2E-08 64.3 -3.7 76 250-328 20-98 (388)
73 KOG2123 Uncharacterized conser 94.5 0.0027 5.9E-08 62.5 -3.9 107 271-394 17-123 (388)
74 COG5238 RNA1 Ran GTPase-activa 94.5 0.03 6.4E-07 55.3 3.0 162 226-400 29-226 (388)
75 PF13306 LRR_5: Leucine rich r 93.5 0.17 3.6E-06 45.8 6.0 101 228-334 13-118 (129)
76 PF13504 LRR_7: Leucine rich r 93.4 0.049 1.1E-06 29.4 1.3 16 274-289 2-17 (17)
77 PF13306 LRR_5: Leucine rich r 93.2 0.13 2.8E-06 46.5 4.7 95 247-346 10-108 (129)
78 TIGR00635 ruvB Holliday juncti 92.4 0.43 9.4E-06 50.7 8.1 148 3-182 130-290 (305)
79 PF13504 LRR_7: Leucine rich r 92.3 0.09 2E-06 28.4 1.4 16 319-334 2-17 (17)
80 PRK00080 ruvB Holliday junctio 92.2 0.47 1E-05 50.9 8.2 152 4-182 152-311 (328)
81 KOG0473 Leucine-rich repeat pr 88.9 0.014 3E-07 56.2 -6.3 82 247-329 40-122 (326)
82 KOG0473 Leucine-rich repeat pr 88.1 0.011 2.5E-07 56.7 -7.4 85 262-346 31-116 (326)
83 smart00369 LRR_TYP Leucine-ric 87.5 0.41 8.8E-06 29.1 1.7 21 272-292 1-21 (26)
84 smart00370 LRR Leucine-rich re 87.5 0.41 8.8E-06 29.1 1.7 21 272-292 1-21 (26)
85 smart00370 LRR Leucine-rich re 86.4 0.61 1.3E-05 28.3 2.1 23 248-270 1-23 (26)
86 smart00369 LRR_TYP Leucine-ric 86.4 0.61 1.3E-05 28.3 2.1 23 248-270 1-23 (26)
87 smart00367 LRR_CC Leucine-rich 83.2 0.69 1.5E-05 28.2 1.2 16 820-835 1-16 (26)
88 COG3903 Predicted ATPase [Gene 82.7 3.5 7.6E-05 44.1 6.9 180 5-202 119-315 (414)
89 smart00367 LRR_CC Leucine-rich 79.6 0.76 1.6E-05 28.0 0.5 17 758-774 2-18 (26)
90 TIGR03015 pepcterm_ATPase puta 79.1 9 0.0002 39.7 8.8 56 23-78 184-242 (269)
91 PRK06893 DNA replication initi 76.4 7.8 0.00017 39.0 7.1 68 2-71 123-200 (229)
92 smart00365 LRR_SD22 Leucine-ri 66.2 5.3 0.00012 24.4 1.9 12 297-308 3-14 (26)
93 PF01637 Arch_ATPase: Archaeal 65.4 15 0.00033 36.7 6.5 51 23-73 183-233 (234)
94 smart00364 LRR_BAC Leucine-ric 64.7 4.3 9.2E-05 24.7 1.2 17 274-290 3-19 (26)
95 COG3899 Predicted ATPase [Gene 61.6 65 0.0014 39.5 11.7 118 21-146 209-333 (849)
96 PRK09087 hypothetical protein; 60.9 33 0.00071 34.4 7.7 90 2-93 116-221 (226)
97 PF13516 LRR_6: Leucine Rich r 54.7 7.6 0.00017 22.9 1.2 12 296-307 2-13 (24)
98 smart00368 LRR_RI Leucine rich 45.0 15 0.00033 22.7 1.5 12 274-285 3-14 (28)
99 TIGR03420 DnaA_homol_Hda DnaA 38.6 1.3E+02 0.0028 29.9 8.1 70 3-75 123-202 (226)
100 COG2909 MalT ATP-dependent tra 37.2 1.4E+02 0.0031 35.6 8.6 173 3-203 160-340 (894)
101 cd00923 Cyt_c_Oxidase_Va Cytoc 32.9 1.8E+02 0.004 24.5 6.2 62 35-96 22-88 (103)
102 PRK00411 cdc6 cell division co 31.3 3.9E+02 0.0084 29.3 11.1 102 6-116 176-296 (394)
103 PRK09112 DNA polymerase III su 30.2 1.1E+02 0.0024 33.1 6.1 67 6-75 175-241 (351)
104 PF02284 COX5A: Cytochrome c o 29.8 1.3E+02 0.0029 25.6 5.1 65 33-97 23-92 (108)
105 PRK08727 hypothetical protein; 27.3 1.3E+02 0.0029 30.2 5.9 67 2-70 125-200 (233)
106 PRK07471 DNA polymerase III su 23.7 1.8E+02 0.0038 31.7 6.3 68 3-75 171-239 (365)
107 PF10236 DAP3: Mitochondrial r 22.7 1.7E+02 0.0037 31.0 5.8 59 12-71 246-306 (309)
108 TIGR01242 26Sp45 26S proteasom 21.7 4.1E+02 0.009 28.8 8.8 64 3-68 261-328 (364)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-58 Score=537.89 Aligned_cols=530 Identities=27% Similarity=0.430 Sum_probs=380.0
Q ss_pred CCcEEEEEeCChHHhhccCCCCccEEcCCCChHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809 2 GGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDC--IENGELKSVATEIVKECAGLPIAILPVAKALK 79 (878)
Q Consensus 2 ~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~ 79 (878)
+||||++|||++.||..+|++..+++++.|+++|||+||+++||.. ...+.++++|++||++|+|+|||++++|+.|+
T Consensus 288 ~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma 367 (889)
T KOG4658|consen 288 NGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLA 367 (889)
T ss_pred CCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhc
Confidence 6899999999999999879999999999999999999999999643 33345899999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHccC------cchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccH--HHHHHHHhhcc
Q 048809 80 NKSSLYVWKDALRQLKNKS------LLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNV--KDLLYHGMGLG 150 (878)
Q Consensus 80 ~~~~~~~w~~~l~~l~~~~------~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~--~~li~~w~~~g 150 (878)
.|.+.++|+++.+.+.+.. ..+.|+++|++|||.||+ ++|.||+|||+|| ||.| ++||.+|||||
T Consensus 368 ~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~------~lK~CFLycalFPED~~I~~e~Li~yWiaEG 441 (889)
T KOG4658|consen 368 CKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE------ELKSCFLYCALFPEDYEIKKEKLIEYWIAEG 441 (889)
T ss_pred CCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH------HHHHHHHhhccCCcccccchHHHHHHHHhcc
Confidence 9999999999999887651 234889999999999999 9999999999999 9999 99999999999
Q ss_pred CccCCCcHHHHHHHHHHHHHHHHhcccccccc---CCcceehhHHHHHHHHHHHc-----ccceEEEEccCCccCCCCCC
Q 048809 151 LFQNINTVDEARDRAHTLVDKLKNSCLLLGGW---RSEWFSMHDVVRDVAISIAS-----RDQHVFAVENEVVPLTSWPD 222 (878)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~mhdli~~~~~~~~~-----~e~~~~~~~~~~~~~~~~~~ 222 (878)
|+++....+.+.+.+++|+.+|+++|+++... ...+|+|||+||++|.++++ .++.+. .++ ......+.
T Consensus 442 fi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv--~~~-~~~~~~~~ 518 (889)
T KOG4658|consen 442 FIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIV--SDG-VGLSEIPQ 518 (889)
T ss_pred CcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEE--ECC-cCcccccc
Confidence 99886666677778889999999999998874 45789999999999999998 566333 321 12233444
Q ss_pred ccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCC--CCCCCchhhcCCCCCcEEEeeCC-CCCCCCccccCCCCCc
Q 048809 223 KDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDH--SLKIPDNFFTGMTELRVLDFTRM-HLLALPSSLGLLQNLQ 299 (878)
Q Consensus 223 ~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--~~~l~~~~~~~l~~Lr~L~Ls~~-~i~~lp~~i~~L~~L~ 299 (878)
...+..+|++++.++.+..++....+++|++|.+.+|. +..++.++|..+++||||||++| .+.++|.+|++|.|||
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred ccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 55577899999999999999999999999999999995 88999999999999999999987 5689999999999999
Q ss_pred EEEccCCCCCCc-ccccCcccCcEEEeeCC-CcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809 300 TLSLDYCELGDM-AIIGDLKKLVILALRGS-DMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR 377 (878)
Q Consensus 300 ~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 377 (878)
||+++++.++.+ .++++|++|.+||+..+ .+..+|..+..|.+||+| .+..... ..+
T Consensus 599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L-----------~l~~s~~----------~~~ 657 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL-----------RLPRSAL----------SND 657 (889)
T ss_pred cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE-----------Eeecccc----------ccc
Confidence 999999999876 89999999999999988 455555556667776666 3322211 111
Q ss_pred ccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhc
Q 048809 378 NASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQL 457 (878)
Q Consensus 378 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l 457 (878)
.....++.++.+|+.+.+..... .+-..+..+.+|.
T Consensus 658 ~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~------------------------------------------- 693 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR------------------------------------------- 693 (889)
T ss_pred hhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH-------------------------------------------
Confidence 23456666666777666543322 1111110111111
Q ss_pred cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccC-cccccceeeccccccccceecCCC
Q 048809 458 KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTT-AFPVLESLLLRHLSNLEKICRGPL 536 (878)
Q Consensus 458 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~L~~~~~~~~ 536 (878)
...+.+.+.++.. ......+ ..+.+|+.|.+.+|............. ... .|+++..+.+.+|..+....+
T Consensus 694 ~~~~~l~~~~~~~-~~~~~~~--~~l~~L~~L~i~~~~~~e~~~~~~~~~--~~~~~f~~l~~~~~~~~~~~r~l~~--- 765 (889)
T KOG4658|consen 694 SLLQSLSIEGCSK-RTLISSL--GSLGNLEELSILDCGISEIVIEWEESL--IVLLCFPNLSKVSILNCHMLRDLTW--- 765 (889)
T ss_pred HHhHhhhhccccc-ceeeccc--ccccCcceEEEEcCCCchhhccccccc--chhhhHHHHHHHHhhccccccccch---
Confidence 1111222211111 1111222 457888888888887543211100000 112 266777777777765554321
Q ss_pred CccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCcccccccccee-ecccCC
Q 048809 537 AAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTL-ELCSLP 615 (878)
Q Consensus 537 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~c~ 615 (878)
....|+|+.|.+..|+.+..+.+. .+.+..++++.+ .+.++..+ .+.+.+
T Consensus 766 -~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~--------------------------~f~~~~~l~~~~~l~ 816 (889)
T KOG4658|consen 766 -LLFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELIL--------------------------PFNKLEGLRMLCSLG 816 (889)
T ss_pred -hhccCcccEEEEecccccccCCCH--HHHhhhcccEEe--------------------------cccccccceeeecCC
Confidence 234577777777777777666542 233333333111 13344444 344444
Q ss_pred CcceecCCCcccccCCcceEEEecCCCcc
Q 048809 616 QLTSFCTGDLHFEFPSLEKLKILECPQVK 644 (878)
Q Consensus 616 ~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 644 (878)
.+..+... ...++.|+.+.+..||++.
T Consensus 817 ~l~~i~~~--~l~~~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 817 GLPQLYWL--PLSFLKLEELIVEECPKLG 843 (889)
T ss_pred CCceeEec--ccCccchhheehhcCcccc
Confidence 44443321 2235558888888888776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-52 Score=517.69 Aligned_cols=563 Identities=19% Similarity=0.254 Sum_probs=392.3
Q ss_pred CCCcEEEEEeCChHHhhccCCCCccEEcCCCChHHHHHHHHHHhC-CCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809 1 MGGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTG-DCIENGELKSVATEIVKECAGLPIAILPVAKALK 79 (878)
Q Consensus 1 ~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~-~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~ 79 (878)
++|||||||||+++|+.. ++++++|+++.|+++|||+||+++|+ ...+++++++++++||++|+|+||||+++|+.|+
T Consensus 322 ~~GsrIIiTTrd~~vl~~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~ 400 (1153)
T PLN03210 322 GSGSRIIVITKDKHFLRA-HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLR 400 (1153)
T ss_pred CCCcEEEEEeCcHHHHHh-cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHc
Confidence 479999999999999985 77889999999999999999999995 4455677999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccHHHHHHHHhhccCccCCCcH
Q 048809 80 NKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNVKDLLYHGMGLGLFQNINTV 158 (878)
Q Consensus 80 ~~~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~~~li~~w~~~g~i~~~~~~ 158 (878)
++ +..+|+++++++.... +++|+++|++||++|++ +..|.||+|+|+|| +..++ .+..|.|.+.+...
T Consensus 401 ~k-~~~~W~~~l~~L~~~~-~~~I~~~L~~SYd~L~~-----~~~k~~Fl~ia~ff~~~~~~-~v~~~l~~~~~~~~--- 469 (1153)
T PLN03210 401 GR-DKEDWMDMLPRLRNGL-DGKIEKTLRVSYDGLNN-----KKDKAIFRHIACLFNGEKVN-DIKLLLANSDLDVN--- 469 (1153)
T ss_pred CC-CHHHHHHHHHHHHhCc-cHHHHHHHHHhhhccCc-----cchhhhhheehhhcCCCCHH-HHHHHHHhcCCCch---
Confidence 98 7899999999998754 34899999999999987 25899999999999 77774 45667776544211
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCcceehhHHHHHHHHHHHcccceEEEEccCCccCCCCCCcc---------ccCCC
Q 048809 159 DEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKD---------VLKDC 229 (878)
Q Consensus 159 ~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~mhdli~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~l 229 (878)
..++.|+++||++.. .+.++|||++|+||+++++++.. +++.+..-|...+ ...++
T Consensus 470 --------~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~-----~~~~r~~l~~~~di~~vl~~~~g~~~v 534 (1153)
T PLN03210 470 --------IGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSN-----EPGEREFLVDAKDICDVLEDNTGTKKV 534 (1153)
T ss_pred --------hChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcC-----CCCcceeEeCHHHHHHHHHhCccccee
Confidence 147889999999775 35699999999999999876531 1111211222111 12344
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCC-------CCCCccccCCC-CCcEE
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL-------LALPSSLGLLQ-NLQTL 301 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i-------~~lp~~i~~L~-~L~~L 301 (878)
+.+++....+.+ ..+....|..+++|++|.+..+.. ..+|..+..++ +||+|
T Consensus 535 ~~i~l~~~~~~~--------------------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L 594 (1153)
T PLN03210 535 LGITLDIDEIDE--------------------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLL 594 (1153)
T ss_pred eEEEeccCccce--------------------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEE
Confidence 555544332221 123445678889999998876542 13666666654 47777
Q ss_pred EccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCc
Q 048809 302 SLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASL 381 (878)
Q Consensus 302 ~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 381 (878)
++.++.++.++.-....+|++|++.++.+..+|.++.
T Consensus 595 ~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~------------------------------------------- 631 (1153)
T PLN03210 595 RWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH------------------------------------------- 631 (1153)
T ss_pred EecCCCCCCCCCcCCccCCcEEECcCccccccccccc-------------------------------------------
Confidence 7777776655332345666666666665555444322
Q ss_pred ccccCCCCCCEEEeecCC-CCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhcccc
Q 048809 382 HELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGI 460 (878)
Q Consensus 382 ~~L~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L 460 (878)
.+++|+.|+++++. ...+|
T Consensus 632 ----~l~~Lk~L~Ls~~~~l~~ip-------------------------------------------------------- 651 (1153)
T PLN03210 632 ----SLTGLRNIDLRGSKNLKEIP-------------------------------------------------------- 651 (1153)
T ss_pred ----cCCCCCEEECCCCCCcCcCC--------------------------------------------------------
Confidence 23334444443321 11111
Q ss_pred ceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccc
Q 048809 461 KDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAES 540 (878)
Q Consensus 461 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~ 540 (878)
.+ ..+++|++|++.+|..+. .++ ..++.
T Consensus 652 ----------------~l--s~l~~Le~L~L~~c~~L~-------------------------------~lp---~si~~ 679 (1153)
T PLN03210 652 ----------------DL--SMATNLETLKLSDCSSLV-------------------------------ELP---SSIQY 679 (1153)
T ss_pred ----------------cc--ccCCcccEEEecCCCCcc-------------------------------ccc---hhhhc
Confidence 11 124566666666654332 221 12456
Q ss_pred cCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCccee
Q 048809 541 FCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSF 620 (878)
Q Consensus 541 l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~ 620 (878)
+++|+.|++.+|+.+..+|.. .++++|+.|++++|..+..++.. .++|+.|+++++. ++.+
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p~~---------------~~nL~~L~L~~n~-i~~l 740 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFPDI---------------STNISWLDLDETA-IEEF 740 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCccccccc---------------cCCcCeeecCCCc-cccc
Confidence 788999999999999888763 26889999999999877666521 4678888888753 6666
Q ss_pred cCCCcccccCCcceEEEecCCCccc-------cccccccccccccceeEEEEecccccccceeeeccccccceeeccCCC
Q 048809 621 CTGDLHFEFPSLEKLKILECPQVKF-------KSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFH 693 (878)
Q Consensus 621 ~~~~~~~~~~~L~~L~l~~C~~l~l-------p~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~ 693 (878)
|.. ..+++|++|.+.+|....+ +...... .++|+.|++++|+. +...
T Consensus 741 P~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~----~~sL~~L~Ls~n~~-------------------l~~l 794 (1153)
T PLN03210 741 PSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTML----SPSLTRLFLSDIPS-------------------LVEL 794 (1153)
T ss_pred ccc---ccccccccccccccchhhccccccccchhhhhc----cccchheeCCCCCC-------------------cccc
Confidence 652 2577888888877653221 1111111 45777777777765 2222
Q ss_pred CchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccccccc
Q 048809 694 PDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITE 773 (878)
Q Consensus 694 ~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 773 (878)
| ..++++++|+.|++++|..+..+|... .+++|+.|++++|.+++.++. ..++|+.|++++ +.++.
T Consensus 795 P-------~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~-n~i~~ 860 (1153)
T PLN03210 795 P-------SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSR-TGIEE 860 (1153)
T ss_pred C-------hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEeECCC-CCCcc
Confidence 2 245677888899998888888887665 788888999988888877632 235788888887 45776
Q ss_pred ccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccC
Q 048809 774 IVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSG 839 (878)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~ 839 (878)
+|.. ...+++|+.|++.+|++|+.+|.. ...+++|+.+++++|++|+.++-
T Consensus 861 iP~s------------i~~l~~L~~L~L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 861 VPWW------------IEKFSNLSFLDMNGCNNLQRVSLN---ISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ChHH------------HhcCCCCCEEECCCCCCcCccCcc---cccccCCCeeecCCCcccccccC
Confidence 6643 335889999999999999998877 67788999999999999887653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-33 Score=348.97 Aligned_cols=501 Identities=17% Similarity=0.176 Sum_probs=311.9
Q ss_pred CCCcEEEeeCCCCCCC-CCCC-CCCCccEEEeecCCCC-CCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCcEEE
Q 048809 227 KDCTAISLNNSNINEL-PQGF-ECPQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQTLS 302 (878)
Q Consensus 227 ~~lr~l~l~~~~~~~l-~~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~ 302 (878)
.+++.|+++++.+... +..+ .+++|++|++++|.+. .+|.++|..+++||+|+|++|.+. .+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4688899998887653 3333 7899999999999664 788888889999999999999886 4554 5688999999
Q ss_pred ccCCCCC-Cc-ccccCcccCcEEEeeCCCcc-cchHhhcccccCccc----------ccc---cccCCcEEEccCCCCCc
Q 048809 303 LDYCELG-DM-AIIGDLKKLVILALRGSDMK-ELVGEIGQLTQLRLL----------IAP---ILSRLEELYIGESPIEW 366 (878)
Q Consensus 303 L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L----------ip~---~l~~L~~L~l~~~~~~~ 366 (878)
|++|.+. .+ ..++++++|++|++++|.+. .+|..++++++|++| +|. .+.+|+.|++.+|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~- 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS- 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-
Confidence 9999876 33 77899999999999999664 678888888888777 232 4566667777666554
Q ss_pred cccccccccccccCcccccCCCCCCEEEeecCCCC-CCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCC
Q 048809 367 GKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK-TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGA 445 (878)
Q Consensus 367 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~ 445 (878)
...+..++++++|+.|++++|... .+|..+..+++|+.|++..+....
T Consensus 226 -----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------------------- 274 (968)
T PLN00113 226 -----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-------------------- 274 (968)
T ss_pred -----------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec--------------------
Confidence 234555667777777777766543 456666666777776664322110
Q ss_pred ccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeecccc
Q 048809 446 NICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHL 525 (878)
Q Consensus 446 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 525 (878)
..+.....+++|++|+++++.........+ ..+++|++|++.++.-...++. ....+++|+.|++.++
T Consensus 275 ---~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~-------~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 275 ---PIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPV-------ALTSLPRLQVLQLWSN 342 (968)
T ss_pred ---cCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCCh-------hHhcCCCCCEEECcCC
Confidence 000112235677777776654332222222 3466777777766542222211 3445677777777765
Q ss_pred ccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccc
Q 048809 526 SNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQ 605 (878)
Q Consensus 526 ~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 605 (878)
.-...+ +..++.+++|+.|++.++. +....+. .+..+++|+.|+++++.....++.... .+++
T Consensus 343 ~l~~~~---p~~l~~~~~L~~L~Ls~n~-l~~~~p~-~~~~~~~L~~L~l~~n~l~~~~p~~~~------------~~~~ 405 (968)
T PLN00113 343 KFSGEI---PKNLGKHNNLTVLDLSTNN-LTGEIPE-GLCSSGNLFKLILFSNSLEGEIPKSLG------------ACRS 405 (968)
T ss_pred CCcCcC---ChHHhCCCCCcEEECCCCe-eEeeCCh-hHhCcCCCCEEECcCCEecccCCHHHh------------CCCC
Confidence 422222 2224456677777777653 3322221 345566777777776654444443222 2677
Q ss_pred cceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeecccccc
Q 048809 606 LTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVN 684 (878)
Q Consensus 606 L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~ 684 (878)
|+.|++++|.-...++. ....+++|+.|++++|.... +|.... . +++|+.|++++|..
T Consensus 406 L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~----l~~L~~L~L~~n~~-------------- 464 (968)
T PLN00113 406 LRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQGRINSRKW-D----MPSLQMLSLARNKF-------------- 464 (968)
T ss_pred CCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccCccChhhc-c----CCCCcEEECcCcee--------------
Confidence 77777777654333333 24456777777777744322 443332 2 67777777777764
Q ss_pred ceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEE
Q 048809 685 AMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMK 764 (878)
Q Consensus 685 l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 764 (878)
....+. . ...++|+.|++++|......|..+..+++|+.|++++| .+....+ ..+.++++|+.|+
T Consensus 465 -----~~~~p~-------~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~ 529 (968)
T PLN00113 465 -----FGGLPD-------S-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIP-DELSSCKKLVSLD 529 (968)
T ss_pred -----eeecCc-------c-cccccceEEECcCCccCCccChhhhhhhccCEEECcCC-cceeeCC-hHHcCccCCCEEE
Confidence 111111 1 12366777787777766666666677777888887774 4444433 3345677788888
Q ss_pred EccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCCC
Q 048809 765 IFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGE 841 (878)
Q Consensus 765 i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~ 841 (878)
|++|.-...+|.. ...+++|+.|++++|.-...+|.. +..+++|+.|++++|+-...+|..+
T Consensus 530 Ls~N~l~~~~p~~------------~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 530 LSHNQLSGQIPAS------------FSEMPVLSQLDLSQNQLSGEIPKN---LGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred CCCCcccccCChh------------HhCcccCCEEECCCCcccccCChh---HhcCcccCEEeccCCcceeeCCCcc
Confidence 8776533333321 223677788888777655567665 5667778888888877766777543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.7e-33 Score=343.38 Aligned_cols=496 Identities=15% Similarity=0.111 Sum_probs=308.3
Q ss_pred CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CCCcccc-CCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809 249 PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-ALPSSLG-LLQNLQTLSLDYCELGDMAIIGDLKKLVILALR 326 (878)
Q Consensus 249 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~-~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~ 326 (878)
.+++.|+++++.+.......|..+++|++|+|++|.+. .+|..+. .+++||+|+|++|.++.....+.+.+|++|+++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence 47999999999766555556799999999999999996 7898765 999999999999998754334679999999999
Q ss_pred CCCcc-cchHhhcccccCccc----------ccc---cccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCE
Q 048809 327 GSDMK-ELVGEIGQLTQLRLL----------IAP---ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTS 392 (878)
Q Consensus 327 ~~~l~-~lp~~i~~L~~L~~L----------ip~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 392 (878)
+|.+. .+|..++++++|++| +|. ++++|+.|++.+|.+. ...+..++++++|+.
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------------~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV------------GQIPRELGQMKSLKW 216 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc------------CcCChHHcCcCCccE
Confidence 99776 688889988887777 222 4555666666655443 223455566666666
Q ss_pred EEeecCCCC-CCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCc
Q 048809 393 LEILIQDEK-TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDM 471 (878)
Q Consensus 393 L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 471 (878)
|++++|... .+|..+..+++|+.|++..+.... ..+.....+++|+.|++.++...
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------------~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-----------------------PIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceecc-----------------------ccChhHhCCCCCCEEECcCCeee
Confidence 666655533 455555556666666554222100 00001123455666666554432
Q ss_pred ccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeec
Q 048809 472 KSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEW 551 (878)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~ 551 (878)
......+ ..+++|++|+++++.-...++. ....+++|+.|++.++.-.... +..+..+++|+.|++.+
T Consensus 274 ~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~-------~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 274 GPIPPSI--FSLQKLISLDLSDNSLSGEIPE-------LVIQLQNLEILHLFSNNFTGKI---PVALTSLPRLQVLQLWS 341 (968)
T ss_pred ccCchhH--hhccCcCEEECcCCeeccCCCh-------hHcCCCCCcEEECCCCccCCcC---ChhHhcCCCCCEEECcC
Confidence 2222222 2355666666655431111110 2334555666666553221111 11234455666666665
Q ss_pred CCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCC
Q 048809 552 CDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPS 631 (878)
Q Consensus 552 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~ 631 (878)
|.-...+|. .+..+++|+.|++++|.....++..... +++|+.|++++++....++. ....+++
T Consensus 342 n~l~~~~p~--~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------------~~~L~~L~l~~n~l~~~~p~--~~~~~~~ 405 (968)
T PLN00113 342 NKFSGEIPK--NLGKHNNLTVLDLSTNNLTGEIPEGLCS------------SGNLFKLILFSNSLEGEIPK--SLGACRS 405 (968)
T ss_pred CCCcCcCCh--HHhCCCCCcEEECCCCeeEeeCChhHhC------------cCCCCEEECcCCEecccCCH--HHhCCCC
Confidence 432222222 3345556666666655433333322221 45566666655443333332 2334556
Q ss_pred cceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhccccccccCCc
Q 048809 632 LEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNL 710 (878)
Q Consensus 632 L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L 710 (878)
|+.|++++|..-. +|..+ .. +++|+.|++++|.. ....+..+..+++|
T Consensus 406 L~~L~L~~n~l~~~~p~~~-~~----l~~L~~L~Ls~N~l--------------------------~~~~~~~~~~l~~L 454 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEF-TK----LPLVYFLDISNNNL--------------------------QGRINSRKWDMPSL 454 (968)
T ss_pred CCEEECcCCEeeeECChhH-hc----CCCCCEEECcCCcc--------------------------cCccChhhccCCCC
Confidence 6666666543222 44332 22 56666666665543 22223334567899
Q ss_pred cEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccccccccc
Q 048809 711 EVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYE 790 (878)
Q Consensus 711 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~ 790 (878)
+.|++++|.....+|... ..++|+.|++++| ++....+ ..+.++++|+.|++++|.-...+|.. .
T Consensus 455 ~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~------------~ 519 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSF-GSKRLENLDLSRN-QFSGAVP-RKLGSLSELMQLKLSENKLSGEIPDE------------L 519 (968)
T ss_pred cEEECcCceeeeecCccc-ccccceEEECcCC-ccCCccC-hhhhhhhccCEEECcCCcceeeCChH------------H
Confidence 999999998777666544 5689999999986 4554433 44578999999999997654455542 2
Q ss_pred cccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCCCccCCCcceeeccccC
Q 048809 791 IVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWD 856 (878)
Q Consensus 791 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~i~~c~ 856 (878)
..+++|+.|+|++|.-...+|.. ...+++|+.|++++|.....+|.....+++|+.+++++|.
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQIPAS---FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred cCccCCCEEECCCCcccccCChh---HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 34899999999998765567766 6789999999999998888999988889999999999863
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.88 E-value=1.3e-23 Score=222.38 Aligned_cols=147 Identities=34% Similarity=0.517 Sum_probs=120.3
Q ss_pred CCcEEEEEeCChHHhhccCCC-CccEEcCCCChHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCCCcchHHHHHHHH
Q 048809 2 GGCKVLLTARSHDVLSSKMDC-QKNIFVDVLNAKEAWSLFEKMTGDC--IENGELKSVATEIVKECAGLPIAILPVAKAL 78 (878)
Q Consensus 2 ~gs~iivTtR~~~v~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l 78 (878)
.|||||||||+..|+.. ++. ...|++++|+++||++||++.++.. ...+..++.+++|+++|+|+||||+++|++|
T Consensus 128 ~~~kilvTTR~~~v~~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 128 SGSKILVTTRDRSVAGS-LGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp SS-EEEEEESCGGGGTT-HHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999985 433 6789999999999999999999632 3456678899999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHccCc-----chhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccH--HHHHHHHhhcc
Q 048809 79 KNKSSLYVWKDALRQLKNKSL-----LGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNV--KDLLYHGMGLG 150 (878)
Q Consensus 79 ~~~~~~~~w~~~l~~l~~~~~-----~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~--~~li~~w~~~g 150 (878)
+.+.+..+|+++++++..... ...++.++.+||+.||+ ++|+||+|||+|| ++.| +.++++|+++|
T Consensus 207 ~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~------~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~ 280 (287)
T PF00931_consen 207 RSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD------ELRRCFLYLSIFPEGVPIPRERLIRLWVAEG 280 (287)
T ss_dssp HHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT------CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-H
T ss_pred cccccccccccccccccccccccccccccccccceechhcCCc------cHHHHHhhCcCCCCCceECHHHHHHHHHHCC
Confidence 776577889999998766432 34899999999999999 9999999999999 8777 99999999999
Q ss_pred CccCC
Q 048809 151 LFQNI 155 (878)
Q Consensus 151 ~i~~~ 155 (878)
||+..
T Consensus 281 ~i~~~ 285 (287)
T PF00931_consen 281 FISSK 285 (287)
T ss_dssp HTC--
T ss_pred CCccc
Confidence 99653
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-24 Score=237.03 Aligned_cols=263 Identities=17% Similarity=0.213 Sum_probs=182.8
Q ss_pred ccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccc
Q 048809 514 FPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDES 593 (878)
Q Consensus 514 ~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 593 (878)
-|+|+.|...+++-.+ .. ....-.+|+.++++. .+++.+| .|+..+.+|+.+.+... .+..++.....
T Consensus 218 g~~l~~L~a~~n~l~~-~~----~~p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N-~l~~lp~ri~~--- 285 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTT-LD----VHPVPLNLQYLDISH-NNLSNLP--EWIGACANLEALNANHN-RLVALPLRISR--- 285 (1081)
T ss_pred CcchheeeeccCccee-ec----cccccccceeeecch-hhhhcch--HHHHhcccceEecccch-hHHhhHHHHhh---
Confidence 3555666666554321 11 111234678888877 5788887 47888999999988874 45666654443
Q ss_pred cCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-cccccccccccccc-ceeEEEEeccccc
Q 048809 594 SNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFH-TIKVLCIEGYDYD 671 (878)
Q Consensus 594 ~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~-~L~~L~l~~c~~~ 671 (878)
..+|+.|.+..| .++.++. ....+.+|++|++.. +++. +|..++.- .. +|+.|+.+.++.
T Consensus 286 ---------~~~L~~l~~~~n-el~yip~--~le~~~sL~tLdL~~-N~L~~lp~~~l~v----~~~~l~~ln~s~n~l- 347 (1081)
T KOG0618|consen 286 ---------ITSLVSLSAAYN-ELEYIPP--FLEGLKSLRTLDLQS-NNLPSLPDNFLAV----LNASLNTLNVSSNKL- 347 (1081)
T ss_pred ---------hhhHHHHHhhhh-hhhhCCC--cccccceeeeeeehh-ccccccchHHHhh----hhHHHHHHhhhhccc-
Confidence 788888888775 4666665 344688999999988 6666 88766543 32 366666666652
Q ss_pred ccceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeech
Q 048809 672 GEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTS 751 (878)
Q Consensus 672 ~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~ 751 (878)
...+.. +-...+.|+.|++.++.--.+..+-+.++..||.|++++ +.|..+ |.
T Consensus 348 -------------------~~lp~~------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~f-pa 400 (1081)
T KOG0618|consen 348 -------------------STLPSY------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSF-PA 400 (1081)
T ss_pred -------------------cccccc------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccC-CH
Confidence 222211 112357889999998876667777788999999999998 788877 55
Q ss_pred hhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCC
Q 048809 752 STAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDC 831 (878)
Q Consensus 752 ~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C 831 (878)
..+.++..|++|++|+ ++|+.+|. ....+..|+.|...+ +.|..+| . +..++.|+.+|+ +|
T Consensus 401 s~~~kle~LeeL~LSG-NkL~~Lp~------------tva~~~~L~tL~ahs-N~l~~fP-e---~~~l~qL~~lDl-S~ 461 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSG-NKLTTLPD------------TVANLGRLHTLRAHS-NQLLSFP-E---LAQLPQLKVLDL-SC 461 (1081)
T ss_pred HHHhchHHhHHHhccc-chhhhhhH------------HHHhhhhhHHHhhcC-Cceeech-h---hhhcCcceEEec-cc
Confidence 6678899999999999 77998885 334578888887654 5677888 4 567888888888 56
Q ss_pred CCccc--ccCCCccC-CCcceeeccc
Q 048809 832 PNMSI--FSGGELST-PNLRKVQLKQ 854 (878)
Q Consensus 832 ~~L~~--lp~~~~~~-~~L~~l~i~~ 854 (878)
.+|+. +|+.. + |+||+|++.+
T Consensus 462 N~L~~~~l~~~~--p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 462 NNLSEVTLPEAL--PSPNLKYLDLSG 485 (1081)
T ss_pred chhhhhhhhhhC--CCcccceeeccC
Confidence 67775 34432 4 8888888874
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.1e-20 Score=234.09 Aligned_cols=176 Identities=19% Similarity=0.250 Sum_probs=128.6
Q ss_pred ccCCCcEEEeeCCCCC-------CCCCCC-CC-CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCC
Q 048809 225 VLKDCTAISLNNSNIN-------ELPQGF-EC-PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLL 295 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~-------~l~~~~-~~-~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L 295 (878)
.+.+++.|.+..+... .+|..+ .+ ++||.|.+.++.+..+|..+ .+.+|+.|+++++.+..+|.++..+
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccC
Confidence 4667888887655321 244444 23 47999999999989999874 6789999999999999999999999
Q ss_pred CCCcEEEccCCC-CCCcccccCcccCcEEEeeCC-CcccchHhhcccccCccc----------ccc--cccCCcEEEccC
Q 048809 296 QNLQTLSLDYCE-LGDMAIIGDLKKLVILALRGS-DMKELVGEIGQLTQLRLL----------IAP--ILSRLEELYIGE 361 (878)
Q Consensus 296 ~~L~~L~L~~~~-l~~l~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L----------ip~--~l~~L~~L~l~~ 361 (878)
++|++|+|++|. ++.++.++.+++|++|++++| .+..+|..+++|++|++| +|. ++++|+.|++.+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsg 713 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG 713 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCC
Confidence 999999999886 777788899999999999998 788899999988888777 333 456677777766
Q ss_pred CCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEE
Q 048809 362 SPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRI 418 (878)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 418 (878)
|... ...+. ...+|+.|+++++.+..+|..+ .+++|+.|.+
T Consensus 714 c~~L------------~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l 754 (1153)
T PLN03210 714 CSRL------------KSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELIL 754 (1153)
T ss_pred CCCc------------ccccc---ccCCcCeeecCCCccccccccc-cccccccccc
Confidence 5322 01111 1346677777777766666654 4556665554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.4e-22 Score=211.67 Aligned_cols=368 Identities=16% Similarity=0.163 Sum_probs=219.7
Q ss_pred cCCCcEEEeeCCCCCCCCCCC----CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809 226 LKDCTAISLNNSNINELPQGF----ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL 301 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 301 (878)
.-+.+-++.+.+.+..+.+.- -.+..++|++++|.+..+.-.+|.++.+|+.+++..|.++.+|...+...||..|
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKL 130 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEE
Confidence 445677888888777653321 3467889999999999998888999999999999999999999999999999999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809 302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN 378 (878)
Q Consensus 302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (878)
+|.+|.|+.+ +.+.-+..|+.|||+.|.++.+|.. +. .-.++++|++.+|.+. .
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp-----------~~~ni~~L~La~N~It------------~ 187 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFP-----------AKVNIKKLNLASNRIT------------T 187 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC-----------CCCCceEEeecccccc------------c
Confidence 9999999988 7899999999999999999887753 33 2346788899988876 1
Q ss_pred cCcccccCCCCCCEEEeecCCCCCCCcchh-cccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhc
Q 048809 379 ASLHELNNLSKLTSLEILIQDEKTLPRDLS-FFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQL 457 (878)
Q Consensus 379 ~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l 457 (878)
.....+..+.+|..|.++.|++..+|...+ .+++|+.|++..+........ .+..+
T Consensus 188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l-----------------------tFqgL 244 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL-----------------------TFQGL 244 (873)
T ss_pred cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh-----------------------hhcCc
Confidence 223456677789999999999999987655 488888888753321110000 01123
Q ss_pred cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCC
Q 048809 458 KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLA 537 (878)
Q Consensus 458 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~ 537 (878)
++|+.|.+......+-....+ -.+.++++|++... .+..+..+ ...++.+|+.|++++ +.+..+.. ..
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N-~l~~vn~g------~lfgLt~L~~L~lS~-NaI~rih~--d~ 312 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETN-RLQAVNEG------WLFGLTSLEQLDLSY-NAIQRIHI--DS 312 (873)
T ss_pred hhhhhhhhhhcCcccccCcce--eeecccceeecccc-hhhhhhcc------cccccchhhhhccch-hhhheeec--ch
Confidence 344444433221100000011 12445555555432 22222111 222345555555554 22332211 11
Q ss_pred ccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809 538 AESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL 617 (878)
Q Consensus 538 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 617 (878)
....++|+.|++++ ++++.+++. .+..+..|++|.++.+ .+..+.... +..+.+|++|+|++..--
T Consensus 313 WsftqkL~~LdLs~-N~i~~l~~~-sf~~L~~Le~LnLs~N-si~~l~e~a-----------f~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 313 WSFTQKLKELDLSS-NRITRLDEG-SFRVLSQLEELNLSHN-SIDHLAEGA-----------FVGLSSLHKLDLRSNELS 378 (873)
T ss_pred hhhcccceeEeccc-cccccCChh-HHHHHHHhhhhccccc-chHHHHhhH-----------HHHhhhhhhhcCcCCeEE
Confidence 23345566666655 455555442 3445556666666653 333332211 122556666666553211
Q ss_pred ceecC-CCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809 618 TSFCT-GDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 618 ~~~~~-~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
-.+.. ......+++|+.|.+.+ ++++ +|...+.+ +++|+.|++.+|+.
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsg----l~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSG----LEALEHLDLGDNAI 428 (873)
T ss_pred EEEecchhhhccchhhhheeecC-ceeeecchhhhcc----CcccceecCCCCcc
Confidence 11111 01223456666666666 5555 66666655 66666666666654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.7e-25 Score=223.45 Aligned_cols=485 Identities=17% Similarity=0.192 Sum_probs=262.1
Q ss_pred CCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCC
Q 048809 228 DCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYC 306 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 306 (878)
.+..+.+++|.+..+...+ .+..+.+|.+++|...++|..+ +++..+..|+.++|++..+|+.++.+.+|+.|+.++|
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 3567788888888776665 7888999999999999999886 8899999999999999999999999999999999999
Q ss_pred CCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 307 ELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 307 ~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
.+..+ ++++.+..|..|+..+|.++.+|.+++++.+|-.+ .+.+|.+. +.+...-
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l-----------~~~~n~l~-------------~l~~~~i 180 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKL-----------DLEGNKLK-------------ALPENHI 180 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHh-----------hccccchh-------------hCCHHHH
Confidence 87765 88999999999999999999999998887766655 22222221 1222333
Q ss_pred CCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEe
Q 048809 386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCL 465 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l 465 (878)
.++.|++|+...|...++|..++.+.+|+.|++.......... +...+.|++|++
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-------------------------f~gcs~L~Elh~ 235 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-------------------------FPGCSLLKELHV 235 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC-------------------------CCccHHHHHHHh
Confidence 3445555555555555555555555554444443211110000 000122223332
Q ss_pred cCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCcc
Q 048809 466 GGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVK 545 (878)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~ 545 (878)
.... ++ +++.-....++++..|++.+. .++..|+ ....+.+|+.|++++ +.+..+ +...+++ .|+
T Consensus 236 g~N~-i~-~lpae~~~~L~~l~vLDLRdN-klke~Pd-------e~clLrsL~rLDlSN-N~is~L---p~sLgnl-hL~ 300 (565)
T KOG0472|consen 236 GENQ-IE-MLPAEHLKHLNSLLVLDLRDN-KLKEVPD-------EICLLRSLERLDLSN-NDISSL---PYSLGNL-HLK 300 (565)
T ss_pred cccH-HH-hhHHHHhcccccceeeecccc-ccccCch-------HHHHhhhhhhhcccC-CccccC---Ccccccc-eee
Confidence 2111 01 111111134677777777664 4555543 444566777777776 344443 3345666 677
Q ss_pred EEEeecCCCccccc----chhhhhhccCccEEEEecCCcchhhhccccc--ccccCCCCccccccccceeecccCCCcce
Q 048809 546 DIRVEWCDKLKNVF----PLVIGRGLQQLQSIEVTGCQNLEVIFAAERG--DESSNSNTQVIELTQLTTLELCSLPQLTS 619 (878)
Q Consensus 546 ~L~l~~c~~L~~l~----~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 619 (878)
.|.+.+.| ++.+- ..+...-++.|+.- ..|..+......... ...+...+........+.|++++ .+++.
T Consensus 301 ~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~--~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~ 376 (565)
T KOG0472|consen 301 FLALEGNP-LRTIRREIISKGTQEVLKYLRSK--IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTL 376 (565)
T ss_pred ehhhcCCc-hHHHHHHHHcccHHHHHHHHHHh--hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-ccccc
Confidence 77776643 22110 00000111122210 011111111000000 00000111122233344444443 23333
Q ss_pred ecCCCccc-ccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCchh
Q 048809 620 FCTGDLHF-EFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLK 697 (878)
Q Consensus 620 ~~~~~~~~-~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~ 697 (878)
+|..-+.. .-.-....+++. +.+. +|..... +..+.+.-+..+. ..
T Consensus 377 VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~-----lkelvT~l~lsnn--------------------------~i 424 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVE-----LKELVTDLVLSNN--------------------------KI 424 (565)
T ss_pred CCHHHHHHhhhcceEEEeccc-chHhhhhhhhHH-----HHHHHHHHHhhcC--------------------------cc
Confidence 33310000 000112223333 2222 3332211 1111111111111 11
Q ss_pred hhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccccccccccc
Q 048809 698 QILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVD 777 (878)
Q Consensus 698 ~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~ 777 (878)
+..+..+..++.|..|+++++ -+.++|..++.+..|+.|+|+. +.++.+ +.+...+..|+.+-.++ +++.+++..
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~l--P~~~y~lq~lEtllas~-nqi~~vd~~ 499 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSF-NRFRML--PECLYELQTLETLLASN-NQIGSVDPS 499 (565)
T ss_pred ccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccc-cccccc--hHHHhhHHHHHHHHhcc-ccccccChH
Confidence 222333455677888888764 3677888888888888888886 566655 23334444455555544 566666543
Q ss_pred ccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCC
Q 048809 778 DDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPN 833 (878)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~ 833 (878)
....+..|..|++.+ +.++.+|.. ++++++|++|+++|.|-
T Consensus 500 -----------~l~nm~nL~tLDL~n-Ndlq~IPp~---LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 500 -----------GLKNMRNLTTLDLQN-NDLQQIPPI---LGNMTNLRHLELDGNPF 540 (565)
T ss_pred -----------HhhhhhhcceeccCC-CchhhCChh---hccccceeEEEecCCcc
Confidence 234577888888866 568888887 78888888888888763
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-23 Score=231.05 Aligned_cols=130 Identities=17% Similarity=0.266 Sum_probs=83.4
Q ss_pred ccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcE
Q 048809 657 FHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTT 736 (878)
Q Consensus 657 l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 736 (878)
.+.|+.|.+.+|.. ++..|+......+|+++++++. .+.+++...+.++..|+.|+++|+. ++.+|.....++.|++
T Consensus 358 ~~~Lq~LylanN~L-td~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHL-TDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcc-cccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHH
Confidence 33444444444433 4444444333334444433332 1344455566778889999999864 8888888889999999
Q ss_pred EEecccCCceEeechhhhhhhccceEEEEcccccccccccccccccccccccccccc-ccchhhccccCcc
Q 048809 737 VAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVF-SELKELRLSSLES 806 (878)
Q Consensus 737 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~ 806 (878)
|...+ +++..+| .+ ..+++|+.+|++ |++|+.+..... .+ |.|++|++++...
T Consensus 435 L~ahs-N~l~~fP--e~-~~l~qL~~lDlS-~N~L~~~~l~~~------------~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHS-NQLLSFP--EL-AQLPQLKVLDLS-CNNLSEVTLPEA------------LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcC-Cceeech--hh-hhcCcceEEecc-cchhhhhhhhhh------------CCCcccceeeccCCcc
Confidence 97665 6777763 33 468899999997 677877654321 23 8899999988765
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.5e-23 Score=216.43 Aligned_cols=320 Identities=19% Similarity=0.284 Sum_probs=202.4
Q ss_pred ccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecC--CCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809 225 VLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHND--HSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL 301 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~--~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 301 (878)
..+++.||++.+|.+.++...+ .++.||++++..| ....||.++| +++.|.+||||+|.+.+.|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 4668899999999988776655 8999999999998 5567999985 8999999999999999999999999999999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccccccc
Q 048809 302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNA 379 (878)
Q Consensus 302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 379 (878)
+|++|.|+.+ +-+-+|+-|-+|||++|++..+|..+.+|.+|++| .+++|.+. .+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL-----------~Ls~NPL~------------hf 188 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL-----------KLSNNPLN------------HF 188 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh-----------hcCCChhh------------HH
Confidence 9999999876 66889999999999999999999999988887777 44444332 22
Q ss_pred CcccccCCCCCCEEEeecCC--CCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhc
Q 048809 380 SLHELNNLSKLTSLEILIQD--EKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQL 457 (878)
Q Consensus 380 ~~~~L~~l~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l 457 (878)
.+..|-.+..|..|.+++.+ ...+|..+..+.+|..++++.+.
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~----------------------------------- 233 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN----------------------------------- 233 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-----------------------------------
Confidence 23334444455555555443 23444444444444333332100
Q ss_pred cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCC
Q 048809 458 KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLA 537 (878)
Q Consensus 458 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~ 537 (878)
+..++..+ -.+++|+.|.+++. .++.+.- ..+...+|++|+++. +.|+.++ ..
T Consensus 234 -------------Lp~vPecl--y~l~~LrrLNLS~N-~iteL~~-------~~~~W~~lEtLNlSr-NQLt~LP---~a 286 (1255)
T KOG0444|consen 234 -------------LPIVPECL--YKLRNLRRLNLSGN-KITELNM-------TEGEWENLETLNLSR-NQLTVLP---DA 286 (1255)
T ss_pred -------------CCcchHHH--hhhhhhheeccCcC-ceeeeec-------cHHHHhhhhhhcccc-chhccch---HH
Confidence 00011111 12344444444442 2222211 223344555555554 3444442 22
Q ss_pred ccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809 538 AESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL 617 (878)
Q Consensus 538 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 617 (878)
...+++|++|.+.+ ++++.-...+.++.+.+|+++..++ +.++-+|.+... |++|+.|.++. +.+
T Consensus 287 vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcR------------C~kL~kL~L~~-NrL 351 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCR------------CVKLQKLKLDH-NRL 351 (1255)
T ss_pred HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCchhhhh------------hHHHHHhcccc-cce
Confidence 34456666666655 3433221112456666777776665 455666655444 77777777765 456
Q ss_pred ceecCCCcccccCCcceEEEecCCCccccc
Q 048809 618 TSFCTGDLHFEFPSLEKLKILECPQVKFKS 647 (878)
Q Consensus 618 ~~~~~~~~~~~~~~L~~L~l~~C~~l~lp~ 647 (878)
..+|.+ +.-++.|+.|++...+++..|+
T Consensus 352 iTLPea--IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 352 ITLPEA--IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred eechhh--hhhcCCcceeeccCCcCccCCC
Confidence 666653 4457777777777777777443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.4e-23 Score=209.88 Aligned_cols=175 Identities=13% Similarity=0.080 Sum_probs=93.4
Q ss_pred ccCCccEEEeecCCCcccccchhhhhhc--cCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809 540 SFCKVKDIRVEWCDKLKNVFPLVIGRGL--QQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL 617 (878)
Q Consensus 540 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 617 (878)
.....+.|.+++ .+++.+|.. ++..- .-....++++ +.+.++|..... +..+.+.-+...+.+
T Consensus 360 ~~i~tkiL~~s~-~qlt~VPdE-Vfea~~~~~Vt~Vnfsk-NqL~elPk~L~~------------lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 360 AIITTKILDVSD-KQLTLVPDE-VFEAAKSEIVTSVNFSK-NQLCELPKRLVE------------LKELVTDLVLSNNKI 424 (565)
T ss_pred hhhhhhhhcccc-cccccCCHH-HHHHhhhcceEEEeccc-chHhhhhhhhHH------------HHHHHHHHHhhcCcc
Confidence 455677888877 577777764 22221 2256677777 456677654222 333333333332333
Q ss_pred ceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCch
Q 048809 618 TSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDL 696 (878)
Q Consensus 618 ~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l 696 (878)
.-++. ....+++|..|++++ +-+. +|.+++. +..|+.|+|+.|.+ ............++.+ +.+-.++
T Consensus 425 sfv~~--~l~~l~kLt~L~L~N-N~Ln~LP~e~~~-----lv~Lq~LnlS~NrF--r~lP~~~y~lq~lEtl-las~nqi 493 (565)
T KOG0472|consen 425 SFVPL--ELSQLQKLTFLDLSN-NLLNDLPEEMGS-----LVRLQTLNLSFNRF--RMLPECLYELQTLETL-LASNNQI 493 (565)
T ss_pred ccchH--HHHhhhcceeeeccc-chhhhcchhhhh-----hhhhheeccccccc--ccchHHHhhHHHHHHH-Hhccccc
Confidence 33333 456789999999998 5566 9988876 88899999999865 0000000011111111 2222233
Q ss_pred hhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecc
Q 048809 697 KQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDF 741 (878)
Q Consensus 697 ~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~ 741 (878)
..+.+.++.++.+|..|++.++ .+..+|+.++++++|++|++++
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred cccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecC
Confidence 3344444444555555555432 2444555555555555555554
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.2e-20 Score=197.31 Aligned_cols=328 Identities=18% Similarity=0.226 Sum_probs=228.5
Q ss_pred cCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEc
Q 048809 226 LKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSL 303 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L 303 (878)
.++++.+.+..|.++.||... ...+|+.|++.+|.+..+..+.++.+..||+||||.|.|..+| .++..-.++++|+|
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 567788888888888888877 5567999999999988888877889999999999999999887 55777789999999
Q ss_pred cCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCccc------c--c-----ccccCCcEEEccCCCCCcc
Q 048809 304 DYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLL------I--A-----PILSRLEELYIGESPIEWG 367 (878)
Q Consensus 304 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L------i--p-----~~l~~L~~L~l~~~~~~~~ 367 (878)
++|.|+.+ ..|.+|.+|.+|.|+.|+++.+|.. |.+|.+|+.| | - .++.+|+.|.+..|.+...
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 99999987 7899999999999999999999965 6778888888 1 1 1777888888887766522
Q ss_pred ccccccccccccCcccccCCCCCCEEEeecCCCCCCC-cchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCc
Q 048809 368 KVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGAN 446 (878)
Q Consensus 368 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~ 446 (878)
.+ ..+-.+.++++|++..|+..... .|+..+..|+.|+++++..- .
T Consensus 261 ~D------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~---------------------r 307 (873)
T KOG4194|consen 261 DD------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ---------------------R 307 (873)
T ss_pred cC------------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh---------------------e
Confidence 11 23455677888888888766554 56778888888887643321 1
Q ss_pred cccchhHHhhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccc
Q 048809 447 ICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLS 526 (878)
Q Consensus 447 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 526 (878)
++...|. ..++|+.|+|+...... +++-....+..|++|.++.. .+..+-.+ ....+.+|++|+++..
T Consensus 308 ih~d~Ws--ftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~N-si~~l~e~------af~~lssL~~LdLr~N- 375 (873)
T KOG4194|consen 308 IHIDSWS--FTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHN-SIDHLAEG------AFVGLSSLHKLDLRSN- 375 (873)
T ss_pred eecchhh--hcccceeEecccccccc--CChhHHHHHHHhhhhccccc-chHHHHhh------HHHHhhhhhhhcCcCC-
Confidence 2222222 24788888887554321 11111124667788888764 23333211 4456788888888763
Q ss_pred ccc-ceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccc
Q 048809 527 NLE-KICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQ 605 (878)
Q Consensus 527 ~L~-~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 605 (878)
.+. .+......+..+++|++|.+.+ ++++.++.. .+.++++||.|++.++.....-+..+.. + .
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe~------------m-~ 440 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFEP------------M-E 440 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecC-ceeeecchh-hhccCcccceecCCCCcceeeccccccc------------c-h
Confidence 222 1112223345688999999988 688888664 6688899999999886543333332222 3 6
Q ss_pred cceeeccc
Q 048809 606 LTTLELCS 613 (878)
Q Consensus 606 L~~L~L~~ 613 (878)
|++|.+..
T Consensus 441 Lk~Lv~nS 448 (873)
T KOG4194|consen 441 LKELVMNS 448 (873)
T ss_pred hhhhhhcc
Confidence 77776654
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=3.6e-21 Score=202.29 Aligned_cols=171 Identities=19% Similarity=0.302 Sum_probs=140.2
Q ss_pred ccCCCcEEEeeCCCCC--CCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809 225 VLKDCTAISLNNSNIN--ELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL 301 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 301 (878)
+++-+|.+++++|+++ .+|..+ .+..++.|-+....+..+|++. +.+.+|..|.+++|++.++...++.|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 4567899999999987 477777 7889999999999999999885 99999999999999999998899999999999
Q ss_pred EccCCCCCC---cccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809 302 SLDYCELGD---MAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN 378 (878)
Q Consensus 302 ~L~~~~l~~---l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (878)
+++.|.++. |+.|-+|..|.+|||+.|.++..|.++.+-. ++-.|+++.|.+.
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AK-----------n~iVLNLS~N~Ie------------- 139 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAK-----------NSIVLNLSYNNIE------------- 139 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhc-----------CcEEEEcccCccc-------------
Confidence 999998763 4889999999999999999999998776544 4455678777765
Q ss_pred cCc-ccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809 379 ASL-HELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI 420 (878)
Q Consensus 379 ~~~-~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 420 (878)
..+ .-+.++..|-.|+++.|+...+|..+..+.+|+.|.++.
T Consensus 140 tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence 222 234567778888999999999998888888888887753
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.4e-16 Score=141.53 Aligned_cols=166 Identities=23% Similarity=0.412 Sum_probs=135.0
Q ss_pred CCCccccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCC
Q 048809 220 WPDKDVLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNL 298 (878)
Q Consensus 220 ~~~~~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 298 (878)
.++--.+..++++.+++|.++.+|+.+ ++.+|++|++++|.+.++|..+ +.+++||.|+++-|++..+|..|+.++-|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchh
Confidence 344334567788899999998888887 8889999999999999999886 88999999999999888899999999999
Q ss_pred cEEEccCCCCCC--c-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccc
Q 048809 299 QTLSLDYCELGD--M-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGE 375 (878)
Q Consensus 299 ~~L~L~~~~l~~--l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~ 375 (878)
++|||.+|.+.+ + ..|..++.|+.|.++.|.+.-+|.++++|++||.| .+..|.+.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil-----------~lrdndll---------- 163 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQIL-----------SLRDNDLL---------- 163 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEE-----------eeccCchh----------
Confidence 999999988652 3 77888888999999999888899999988776655 44444332
Q ss_pred ccccCcccccCCCCCCEEEeecCCCCCCCcchhcc
Q 048809 376 RRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFF 410 (878)
Q Consensus 376 ~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l 410 (878)
..+.+++.+.+|++|.+.+|+...+|..++.+
T Consensus 164 ---~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 164 ---SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred ---hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 46788889999999999999988888876543
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.43 E-value=2.1e-15 Score=153.06 Aligned_cols=315 Identities=17% Similarity=0.197 Sum_probs=200.1
Q ss_pred cccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhccccccccc
Q 048809 515 PVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESS 594 (878)
Q Consensus 515 ~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 594 (878)
..|++|.+++|.....-... .....+|+++.|.+.+|.++++..-....+.++.|+.|++..|..++........
T Consensus 138 g~lk~LSlrG~r~v~~sslr-t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la---- 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLR-TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA---- 212 (483)
T ss_pred cccccccccccccCCcchhh-HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----
Confidence 45788888888654432111 1134678888889999988888766667788888999999988888776544211
Q ss_pred CCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEecccccc
Q 048809 595 NSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDYDG 672 (878)
Q Consensus 595 ~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~~~ 672 (878)
..+++|++|+++.|+.++.-........+..++.+...+|..+. .-...... +.-+..+++.+|..++
T Consensus 213 ------~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~----~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 213 ------EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY----CLEILKLNLQHCNQLT 282 (483)
T ss_pred ------HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc----ChHhhccchhhhcccc
Confidence 23888999999988887773333334566778888777887776 11111122 5566777777887766
Q ss_pred cce-eeeccccccceeeccCCCCchhhhccccc-cccCCccEEEEccCCCcccc--cCcccccCCCcEEEecccCCceEe
Q 048809 673 EEL-FETVENGVNAMIKGINFHPDLKQILKQES-SHANNLEVLEIYGCDNLINL--VPSSTSFQNLTTVAVDFCYGMINI 748 (878)
Q Consensus 673 ~~~-~~~~~~~~~l~~l~l~~~~~l~~i~~~~~-~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~i~~c~~l~~l 748 (878)
++. +........++.++.++|.++.+.....+ .+..+|+.|.+.+|+.+++. ..-..+.+.|+.+++.+|..+.+.
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 654 33333345566677777776655444333 45677888888888766543 112246677888888777766655
Q ss_pred echhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEE
Q 048809 749 LTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVV 828 (878)
Q Consensus 749 ~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i 828 (878)
.....+.+++.|+.|.+++|..+++..... +.........|..+++++||.+++-... .+..+++||++++
T Consensus 363 tL~sls~~C~~lr~lslshce~itD~gi~~-------l~~~~c~~~~l~~lEL~n~p~i~d~~Le--~l~~c~~Leri~l 433 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSHCELITDEGIRH-------LSSSSCSLEGLEVLELDNCPLITDATLE--HLSICRNLERIEL 433 (483)
T ss_pred hHhhhccCCchhccCChhhhhhhhhhhhhh-------hhhccccccccceeeecCCCCchHHHHH--HHhhCcccceeee
Confidence 334555677788888888887766551111 0011223567777888888877755432 2456777888888
Q ss_pred cCCCCcccccC--CCccCCCcceeecc
Q 048809 829 EDCPNMSIFSG--GELSTPNLRKVQLK 853 (878)
Q Consensus 829 ~~C~~L~~lp~--~~~~~~~L~~l~i~ 853 (878)
.+|..+.+=|- -...+|+++.....
T Consensus 434 ~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 434 IDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred echhhhhhhhhHHHHhhCccceehhhc
Confidence 88877776432 12346666655543
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=7e-15 Score=130.76 Aligned_cols=156 Identities=24% Similarity=0.406 Sum_probs=137.7
Q ss_pred CCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC-cccccCc
Q 048809 239 INELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD-MAIIGDL 317 (878)
Q Consensus 239 ~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-l~~i~~L 317 (878)
+.+++..+.+.+++.|-+++|.+..+|..+ ..+++|++|++++|.|+++|.+|+.++.||.|++.-|++.. +..||.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 456777778999999999999999999997 89999999999999999999999999999999999999765 4999999
Q ss_pred ccCcEEEeeCCCcc--cchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEe
Q 048809 318 KKLVILALRGSDMK--ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEI 395 (878)
Q Consensus 318 ~~L~~L~l~~~~l~--~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l 395 (878)
..|++||+.+|++. .+|..|-.|+.|+-| +++.|.+. ..+..++++++|+.|.+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlral-----------yl~dndfe-------------~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRAL-----------YLGDNDFE-------------ILPPDVGKLTNLQILSL 157 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHH-----------HhcCCCcc-------------cCChhhhhhcceeEEee
Confidence 99999999999654 689888777766655 66666443 56788999999999999
Q ss_pred ecCCCCCCCcchhcccCCceEEEE
Q 048809 396 LIQDEKTLPRDLSFFKMLQRYRIL 419 (878)
Q Consensus 396 ~~~~~~~~~~~~~~l~~L~~L~l~ 419 (878)
..|+.-++|+.++.+..|+.|.+.
T Consensus 158 rdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 158 RDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred ccCchhhCcHHHHHHHHHHHHhcc
Confidence 999999999999999999998875
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.42 E-value=2.1e-15 Score=153.05 Aligned_cols=273 Identities=16% Similarity=0.183 Sum_probs=117.7
Q ss_pred cccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhccccccc
Q 048809 513 AFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDE 592 (878)
Q Consensus 513 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 592 (878)
.+|+++.|.+.+|.++++..... ....+++|+.|.+..|+.+++........++++|++|+++.|+.+..-.....
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~--- 237 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL--- 237 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH---
Confidence 45555555555555444321100 01234555555555555555543333344555555555555555443111100
Q ss_pred ccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-cc-ccccccccccccceeEEEEecccc
Q 048809 593 SSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FK-STIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 593 ~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp-~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
...+..++.+.+.+|..+..-........++-+.++++.+|..++ .. ..+..+ +..|+.|+.++|..
T Consensus 238 -------~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~----c~~lq~l~~s~~t~ 306 (483)
T KOG4341|consen 238 -------QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG----CHALQVLCYSSCTD 306 (483)
T ss_pred -------hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh----hhHhhhhcccCCCC
Confidence 011333444444444433321111112233444445555555554 11 111112 45555555555555
Q ss_pred cccceeeeccc-cccceeeccCCCCchhhhccccc-cccCCccEEEEccCCCcccc--cCcccccCCCcEEEecccCCce
Q 048809 671 DGEELFETVEN-GVNAMIKGINFHPDLKQILKQES-SHANNLEVLEIYGCDNLINL--VPSSTSFQNLTTVAVDFCYGMI 746 (878)
Q Consensus 671 ~~~~~~~~~~~-~~~l~~l~l~~~~~l~~i~~~~~-~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~i~~c~~l~ 746 (878)
+++......+. .++|+++.+..|..+.......+ .+.+.|+.+++.+|....+. ..-..+++.|+.|.++.|..++
T Consensus 307 ~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 307 ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence 44444333322 24455555555555444432222 34455555555555444322 1122345555555555555554
Q ss_pred Eeec---hhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceee
Q 048809 747 NILT---SSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFC 811 (878)
Q Consensus 747 ~l~~---~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 811 (878)
+... .....+...|+.+.+++|+.+++..-. ....++.|+.+++.+|...+.-+
T Consensus 387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-----------~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-----------HLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hhhhhhhhhccccccccceeeecCCCCchHHHHH-----------HHhhCcccceeeeechhhhhhhh
Confidence 4311 111123344555555555555443221 12234455555555555554443
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=1.4e-14 Score=145.78 Aligned_cols=114 Identities=23% Similarity=0.408 Sum_probs=82.1
Q ss_pred EEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccC-CCCC
Q 048809 232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDY-CELG 309 (878)
Q Consensus 232 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~-~~l~ 309 (878)
++-++..++++|..+. +....++|..|.+..||+++|+.+++||.||||+|.|+.| |+.|..|..|-.|-+-+ |+|+
T Consensus 51 VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 3444455666665542 3556778888888888888888888888888888888776 77788888877666655 6688
Q ss_pred Cc--ccccCcccCcEEEeeCCCcccchHh-hcccccCccc
Q 048809 310 DM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLL 346 (878)
Q Consensus 310 ~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L 346 (878)
++ ..|++|..|+.|.+.-|++.-++.+ +..|.+|..|
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence 76 6688888888888887777766544 6666655544
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=2.3e-13 Score=160.19 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=95.8
Q ss_pred CCCcEEEeeCCC--CCCCCCC--CCCCCccEEEeecC-CCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809 227 KDCTAISLNNSN--INELPQG--FECPQLKYFRIHND-HSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL 301 (878)
Q Consensus 227 ~~lr~l~l~~~~--~~~l~~~--~~~~~Lr~L~l~~~-~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 301 (878)
.+++.|-+..|. +..++.. ..+|.||+||+++| ...++|..+ +.+-|||||+|+++.+..+|.++++|+.|+||
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 368999998886 6667663 37999999999998 778999886 99999999999999999999999999999999
Q ss_pred EccCCC-CCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCccc
Q 048809 302 SLDYCE-LGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL 346 (878)
Q Consensus 302 ~L~~~~-l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 346 (878)
++..+. +..+ ..+..|.+||+|.+.......-...++.+.+|++|
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 999997 5666 45556999999999887533322334444544444
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=7.1e-12 Score=144.35 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=41.9
Q ss_pred EEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC
Q 048809 231 AISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD 310 (878)
Q Consensus 231 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~ 310 (878)
.|+++.+.++.+|..+. ++|+.|.+.+|.+..+|. .+++|++|++++|.++.+|.. ..+|++|++++|.++.
T Consensus 205 ~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTH 276 (788)
T ss_pred EEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhh
Confidence 44444444444444331 245555555554444443 134455555555555444432 2344455555554443
Q ss_pred cccccCcccCcEEEeeCCCcccch
Q 048809 311 MAIIGDLKKLVILALRGSDMKELV 334 (878)
Q Consensus 311 l~~i~~L~~L~~L~l~~~~l~~lp 334 (878)
++. -..+|+.|++++|+++.+|
T Consensus 277 Lp~--lp~~L~~L~Ls~N~Lt~LP 298 (788)
T PRK15387 277 LPA--LPSGLCKLWIFGNQLTSLP 298 (788)
T ss_pred hhh--chhhcCEEECcCCcccccc
Confidence 321 1133444455555444444
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=3.3e-12 Score=148.15 Aligned_cols=101 Identities=17% Similarity=0.287 Sum_probs=68.5
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCC
Q 048809 228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 307 (878)
+...+.+.++.++.+|..+ .++|+.|++++|.+..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 4566777777777777644 2467777777777777776653 467777777777777776554 367777777777
Q ss_pred CCCc-ccccCcccCcEEEeeCCCcccchHh
Q 048809 308 LGDM-AIIGDLKKLVILALRGSDMKELVGE 336 (878)
Q Consensus 308 l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~ 336 (878)
++.+ ..+. .+|++|++++|+++.+|..
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~ 280 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPEN 280 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccc
Confidence 6655 3333 4677777777777766654
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=1.7e-11 Score=141.34 Aligned_cols=249 Identities=19% Similarity=0.144 Sum_probs=169.5
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCC
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLL 295 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L 295 (878)
.+...|. .++.+++.|++.+|.++.+|.. .++|++|++++|.+..+|.. .++|+.|++++|.+..+|...
T Consensus 212 ~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~lp--- 281 (788)
T PRK15387 212 GLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPALP--- 281 (788)
T ss_pred CCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhch---
Confidence 4444443 4566899999999999999874 58999999999999999852 468999999999999888743
Q ss_pred CCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccc
Q 048809 296 QNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGE 375 (878)
Q Consensus 296 ~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~ 375 (878)
.+|+.|++++|.++.++. .+.+|++|++++|.++.+|.... +|+.|++.+|.+..
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp~--------------~L~~L~Ls~N~L~~--------- 336 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALPS--------------ELCKLWAYNNQLTS--------- 336 (788)
T ss_pred hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCcc--------------cccccccccCcccc---------
Confidence 578899999999887743 24789999999999988875322 34455666665541
Q ss_pred ccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHh
Q 048809 376 RRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIM 455 (878)
Q Consensus 376 ~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~ 455 (878)
.+ . -..+|+.|++++|....+|.. ..+|+.|.+..+... .++.
T Consensus 337 ----LP-~--lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~---------------------------~LP~ 379 (788)
T PRK15387 337 ----LP-T--LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT---------------------------SLPA 379 (788)
T ss_pred ----cc-c--cccccceEecCCCccCCCCCC---Ccccceehhhccccc---------------------------cCcc
Confidence 11 1 114688888888887777753 345555555321110 0111
Q ss_pred hccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCC
Q 048809 456 QLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGP 535 (878)
Q Consensus 456 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~ 535 (878)
.+.+|+.|+++++.. .. ++. ..++|+.|+++++. +..++ ..+.+|+.|++++ +.++.++.
T Consensus 380 l~~~L~~LdLs~N~L-t~-LP~----l~s~L~~LdLS~N~-LssIP----------~l~~~L~~L~Ls~-NqLt~LP~-- 439 (788)
T PRK15387 380 LPSGLKELIVSGNRL-TS-LPV----LPSELKELMVSGNR-LTSLP----------MLPSGLLSLSVYR-NQLTRLPE-- 439 (788)
T ss_pred cccccceEEecCCcc-cC-CCC----cccCCCEEEccCCc-CCCCC----------cchhhhhhhhhcc-CcccccCh--
Confidence 235788888876543 22 222 24689999998864 44432 1235688888887 45666532
Q ss_pred CCccccCCccEEEeecCCCcccc
Q 048809 536 LAAESFCKVKDIRVEWCDKLKNV 558 (878)
Q Consensus 536 ~~~~~l~~L~~L~l~~c~~L~~l 558 (878)
.+..+++|+.|++.++ .+...
T Consensus 440 -sl~~L~~L~~LdLs~N-~Ls~~ 460 (788)
T PRK15387 440 -SLIHLSSETTVNLEGN-PLSER 460 (788)
T ss_pred -HHhhccCCCeEECCCC-CCCch
Confidence 3567889999999885 45443
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=7.5e-12 Score=145.21 Aligned_cols=153 Identities=19% Similarity=0.301 Sum_probs=113.3
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCC
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLL 295 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L 295 (878)
.+...|. .++..++.|++++|.++.+|.... ++|++|++++|.+..+|..+. .+|+.|+|++|.+..+|..+.
T Consensus 189 ~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~-- 261 (754)
T PRK15370 189 GLTTIPA-CIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP-- 261 (754)
T ss_pred CcCcCCc-ccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh--
Confidence 3344443 356789999999999999987653 699999999999999998653 479999999999999998875
Q ss_pred CCCcEEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccc
Q 048809 296 QNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDG 374 (878)
Q Consensus 296 ~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~ 374 (878)
.+|++|++++|.++.+ ..+. .+|++|++++|+++.+|..+. .+|+.|++.+|.+..
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp-------------~sL~~L~Ls~N~Lt~-------- 318 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP-------------SGITHLNVQSNSLTA-------- 318 (754)
T ss_pred CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch-------------hhHHHHHhcCCcccc--------
Confidence 5899999999998876 4454 589999999999988886442 134455666665541
Q ss_pred cccccCcccccCCCCCCEEEeecCCCCCCCc
Q 048809 375 ERRNASLHELNNLSKLTSLEILIQDEKTLPR 405 (878)
Q Consensus 375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 405 (878)
.+..+ .++|+.|++++|....+|.
T Consensus 319 -----LP~~l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 319 -----LPETL--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred -----CCccc--cccceeccccCCccccCCh
Confidence 11111 2467777777776665554
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=1e-11 Score=125.55 Aligned_cols=131 Identities=22% Similarity=0.371 Sum_probs=113.5
Q ss_pred ccCCCCCCccccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeC-CCCCCCCcc
Q 048809 215 VPLTSWPDKDVLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTR-MHLLALPSS 291 (878)
Q Consensus 215 ~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~-~~i~~lp~~ 291 (878)
+.+.+.| .+.+.....|.|..|.|+.||+.. .+++||.|++++|.+..|.++.|..++.|-.|-+-+ |+|+.+|..
T Consensus 56 ~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 56 KGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 3444444 357888899999999999999877 899999999999999999999999999987776665 899999954
Q ss_pred -ccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCccc
Q 048809 292 -LGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLL 346 (878)
Q Consensus 292 -i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L 346 (878)
|+.|..||.|.+.-|++.-+ ..+..|++|..|.+..|.+..++. .+..+.+++++
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 79999999999999998754 789999999999999999999888 58888888887
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3.2e-10 Score=107.00 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=51.0
Q ss_pred cCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccc-cCCCCCcEEEc
Q 048809 226 LKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSL-GLLQNLQTLSL 303 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L 303 (878)
+.+.|.|++.++.|+.+.... .+.+|++|++++|.+..++. +..+++|++|++++|.|+.+++.+ ..+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 345799999999999887654 57899999999999999875 689999999999999999997666 46899999999
Q ss_pred cCCCCCCc---ccccCcccCcEEEeeCCCcccchHh----hcccccCccc
Q 048809 304 DYCELGDM---AIIGDLKKLVILALRGSDMKELVGE----IGQLTQLRLL 346 (878)
Q Consensus 304 ~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L 346 (878)
++|.|.++ ..+..+++|++|++.+|.+...+.- +..+++|+.|
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 99998755 6778899999999999977765432 4555555444
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=2.3e-10 Score=107.94 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=22.4
Q ss_pred eCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhc-CCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-c
Q 048809 235 NNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFT-GMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-A 312 (878)
Q Consensus 235 ~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~-~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~ 312 (878)
..+.|+.++...+..++|.|++.+|.+..+.. ++ .+.+|++|||++|.|++++ .+..+++|++|++++|.|+.+ .
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 34445556655566667777777776666643 23 4667777777777777664 466677777777777777666 3
Q ss_pred cc-cCcccCcEEEeeCCCccc
Q 048809 313 II-GDLKKLVILALRGSDMKE 332 (878)
Q Consensus 313 ~i-~~L~~L~~L~l~~~~l~~ 332 (878)
.+ ..+++|++|++++|++..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISD 102 (175)
T ss_dssp HHHHH-TT--EEE-TTS---S
T ss_pred chHHhCCcCCEEECcCCcCCC
Confidence 34 356777777777776654
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=1.9e-10 Score=121.80 Aligned_cols=167 Identities=23% Similarity=0.316 Sum_probs=134.2
Q ss_pred CCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809 227 KDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305 (878)
Q Consensus 227 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 305 (878)
......+++.|.+.++|... .+..|..+.+..|.+..+|..+ +.+..|.+|||+.|.++.+|..++.|+ |++|.+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 34567888899999998877 6778889999999999999886 899999999999999999999998876 99999999
Q ss_pred CCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCccc---------cccccc--CCcEEEccCCCCCcccccccc
Q 048809 306 CELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------IAPILS--RLEELYIGESPIEWGKVEGVD 373 (878)
Q Consensus 306 ~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L---------ip~~l~--~L~~L~l~~~~~~~~~~~~~~ 373 (878)
|+++.+ ..++.+..|..||.+.|.+..+|..++.|.+|+.| +|..+. .|..|+++.|.+.
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-------- 224 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-------- 224 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee--------
Confidence 998876 88999999999999999999999999999998888 444332 3456666666554
Q ss_pred ccccccCcccccCCCCCCEEEeecCCCCCCCcchh
Q 048809 374 GERRNASLHELNNLSKLTSLEILIQDEKTLPRDLS 408 (878)
Q Consensus 374 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~ 408 (878)
..+..+.+|++|++|-|.+|....-|..++
T Consensus 225 -----~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 225 -----YLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred -----ecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 345566677777777777777766666654
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=2.6e-10 Score=120.77 Aligned_cols=174 Identities=22% Similarity=0.355 Sum_probs=147.3
Q ss_pred EEEeeCCCCCCCCCC---CCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCC
Q 048809 231 AISLNNSNINELPQG---FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 231 ~l~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 307 (878)
++.|++..++++|.. +.+......+++.|+...+|..+ +.+..|..|.|..|.|..+|..+++|..|.||+|+.|.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 455666666666543 36667778999999999999885 88999999999999999999999999999999999999
Q ss_pred CCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCccc---------ccc---cccCCcEEEccCCCCCccccccccc
Q 048809 308 LGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------IAP---ILSRLEELYIGESPIEWGKVEGVDG 374 (878)
Q Consensus 308 l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L---------ip~---~l~~L~~L~l~~~~~~~~~~~~~~~ 374 (878)
++.+ ..++.|. |++|-+++|+++.+|.+++-+.+|.+| +|. ++.+|+.|.+..|.+.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~--------- 202 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE--------- 202 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh---------
Confidence 9876 6677665 899999999999999999988888888 444 6778888888877664
Q ss_pred cccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809 375 ERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI 420 (878)
Q Consensus 375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 420 (878)
..++++..| .|..|++++|++..+|..+..+..|+.|.+..
T Consensus 203 ----~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 203 ----DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred ----hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 467788866 59999999999999999999999999999864
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=1.1e-09 Score=106.85 Aligned_cols=121 Identities=22% Similarity=0.338 Sum_probs=106.5
Q ss_pred cccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEE
Q 048809 224 DVLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLS 302 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~ 302 (878)
+.|+.+..+++++|.|+.+..++ -.|++|.|+++.|.+..+.. +..+.+|..||||+|.++++-..-.+|-|.++|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 44777899999999999998888 47999999999998888876 5899999999999999988766667889999999
Q ss_pred ccCCCCCCcccccCcccCcEEEeeCCCcccch--HhhcccccCccc
Q 048809 303 LDYCELGDMAIIGDLKKLVILALRGSDMKELV--GEIGQLTQLRLL 346 (878)
Q Consensus 303 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L 346 (878)
|++|.++.++.+++|.+|..||+++|+|..+. .+||+|+.|+++
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 99999999999999999999999999988765 358888777666
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.67 E-value=6.4e-09 Score=112.16 Aligned_cols=103 Identities=26% Similarity=0.299 Sum_probs=56.5
Q ss_pred CcEEEeeCCCCCC-----CCCCC-CCCCccEEEeecCCCCCCCc------hhhcCCCCCcEEEeeCCCCC-CCCccccCC
Q 048809 229 CTAISLNNSNINE-----LPQGF-ECPQLKYFRIHNDHSLKIPD------NFFTGMTELRVLDFTRMHLL-ALPSSLGLL 295 (878)
Q Consensus 229 lr~l~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~l~~------~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L 295 (878)
++.+.+.++.++. ++... ..+++++|+++++.....+. ..|..+.+|+.|++++|.+. ..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 5666666665532 22222 44556677776664442111 23456667777777777664 233334333
Q ss_pred CC---CcEEEccCCCCCC-----c-ccccCc-ccCcEEEeeCCCcc
Q 048809 296 QN---LQTLSLDYCELGD-----M-AIIGDL-KKLVILALRGSDMK 331 (878)
Q Consensus 296 ~~---L~~L~L~~~~l~~-----l-~~i~~L-~~L~~L~l~~~~l~ 331 (878)
.+ |++|++++|.+.. + ..+..+ .+|+.|++++|.++
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 33 7777777776552 1 344555 66777777776655
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.62 E-value=2.5e-08 Score=107.57 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=17.0
Q ss_pred CCCCCEEEeecCCCC-----CCCcchhcccCCceEEEE
Q 048809 387 LSKLTSLEILIQDEK-----TLPRDLSFFKMLQRYRIL 419 (878)
Q Consensus 387 l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~ 419 (878)
..+|++|+++++... .+...+..+++|+.++++
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 356777777766543 112222234556666654
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=3.8e-08 Score=76.12 Aligned_cols=60 Identities=28% Similarity=0.536 Sum_probs=48.1
Q ss_pred CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCC
Q 048809 249 PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 249 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l 308 (878)
|+|++|++++|.+..+|.+.|..+++|++|++++|.++.+| ..|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888888888888888888888888888888775 4678888888888888763
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=2.3e-08 Score=97.73 Aligned_cols=170 Identities=20% Similarity=0.307 Sum_probs=102.0
Q ss_pred ccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCC----CCchh-------------------hcCCCCCcEEEe
Q 048809 225 VLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLK----IPDNF-------------------FTGMTELRVLDF 280 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~----l~~~~-------------------~~~l~~Lr~L~L 280 (878)
++++++.+-++.+.-+.|.... .-|.|.++.+....+.. +|... ...-+.|..|||
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 4566777777776655444333 34667777666542221 11111 012245888899
Q ss_pred eCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEcc
Q 048809 281 TRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIG 360 (878)
Q Consensus 281 s~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~ 360 (878)
|+|.|+.+-+++.-++.+|.|++++|.+..+.++..|.+|++||+++|.++++..--.+| .+.+.|.+.
T Consensus 292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL-----------GNIKtL~La 360 (490)
T KOG1259|consen 292 SGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKL-----------GNIKTLKLA 360 (490)
T ss_pred cccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhh-----------cCEeeeehh
Confidence 999998888888888899999999999888877888899999999998776654432222 333444444
Q ss_pred CCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCC--cchhcccCCceEEEE
Q 048809 361 ESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRIL 419 (878)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~ 419 (878)
+|.+. .+..|+++-+|..|++++|++..+. ..+++++.|+.+.+.
T Consensus 361 ~N~iE--------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 361 QNKIE--------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhHh--------------hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 44332 2344455555555555555544332 233345555544443
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=7.2e-08 Score=107.08 Aligned_cols=167 Identities=24% Similarity=0.361 Sum_probs=89.8
Q ss_pred CCcEEEeeCCCCCCCCCCCCCC--CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809 228 DCTAISLNNSNINELPQGFECP--QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 305 (878)
.+..+++.++.+.+++...... +|+.|++++|.+..+|..+ ..+++|+.|++++|.+..+|...+.+.+|+.|++++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 3455555555555555544332 5555555555555554332 555555555555555555555554555555555555
Q ss_pred CCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 306 CELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 306 ~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
|.++.+ ..++.+.+|++|.+++|.+...+..+.++.++. .|.+..+.+. ..+..+
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~-----------~l~l~~n~~~-------------~~~~~~ 251 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS-----------GLELSNNKLE-------------DLPESI 251 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCcceecchhhhhccccc-----------ccccCCceee-------------eccchh
Confidence 555544 223444445555555554444444444444333 3333333222 124566
Q ss_pred cCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809 385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI 420 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 420 (878)
+.+.+++.|+++++.+..++. +..+.+++.+++..
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ccccccceecccccccccccc-ccccCccCEEeccC
Confidence 677778888888887777766 55777777777653
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=8.8e-08 Score=106.40 Aligned_cols=170 Identities=26% Similarity=0.416 Sum_probs=132.1
Q ss_pred EEEeeCCCC-CCCCCCCCCCCccEEEeecCCCCCCCchhhcCCC-CCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCC
Q 048809 231 AISLNNSNI-NELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMT-ELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 231 ~l~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l 308 (878)
.+....+.+ ..+.....++.++.|++.++.+.+++... ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 355666555 33333446688999999999999999865 5664 99999999999999999999999999999999999
Q ss_pred CCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCC
Q 048809 309 GDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNL 387 (878)
Q Consensus 309 ~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l 387 (878)
+++ ...+.+.+|+.|++++|.+..+|..++.+..| +.|.+.+|.. ...+..+.++
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L-----------~~l~~~~N~~-------------~~~~~~~~~~ 231 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSAL-----------EELDLSNNSI-------------IELLSSLSNL 231 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhh-----------hhhhhcCCcc-------------eecchhhhhc
Confidence 988 44559999999999999999999877555544 4446655532 1355667788
Q ss_pred CCCCEEEeecCCCCCCCcchhcccCCceEEEEeccccc
Q 048809 388 SKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWT 425 (878)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 425 (878)
.++..+.+..++...++..+..+..++.|+++.+....
T Consensus 232 ~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 232 KNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccccccccCCceeeeccchhccccccceeccccccccc
Confidence 88888888888887777888788889999887544433
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.49 E-value=2.5e-07 Score=97.99 Aligned_cols=70 Identities=26% Similarity=0.339 Sum_probs=44.0
Q ss_pred ccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcE
Q 048809 657 FHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTT 736 (878)
Q Consensus 657 l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 736 (878)
+..++.|+|++|. |..+|.+ +.+|++|.+++|..++.+|..+ .++|+.
T Consensus 51 ~~~l~~L~Is~c~--------------------L~sLP~L----------P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~ 98 (426)
T PRK15386 51 ARASGRLYIKDCD--------------------IESLPVL----------PNELTEITIENCNNLTTLPGSI--PEGLEK 98 (426)
T ss_pred hcCCCEEEeCCCC--------------------CcccCCC----------CCCCcEEEccCCCCcccCCchh--hhhhhh
Confidence 6778888888884 3333321 3567777777777776665432 357777
Q ss_pred EEecccCCceEeechhhhhhhccceEEEEc
Q 048809 737 VAVDFCYGMINILTSSTAKSLVRLKQMKIF 766 (878)
Q Consensus 737 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 766 (878)
|++++|.++..++ ++|+.|++.
T Consensus 99 L~Ls~Cs~L~sLP--------~sLe~L~L~ 120 (426)
T PRK15386 99 LTVCHCPEISGLP--------ESVRSLEIK 120 (426)
T ss_pred eEccCcccccccc--------cccceEEeC
Confidence 7777776665542 246666664
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=3.4e-07 Score=97.05 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=86.9
Q ss_pred cccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccc
Q 048809 705 SHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDN 784 (878)
Q Consensus 705 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~ 784 (878)
..+..++.|++++| .++++| ...++|++|.+++|++++.++ ..+ .++|+.|+|++|..+..+|.....-.+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~ 120 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEISGLPESVRSLEIK 120 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCcccccccccccceEEeC
Confidence 34578999999999 788887 245689999999999998873 222 2589999999998888776532100000
Q ss_pred --cccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCCCccCCCcceeeccc
Q 048809 785 --YAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQ 854 (878)
Q Consensus 785 --~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~i~~ 854 (878)
........+++|+.|.+.++......... ..-+++|++|.|++|..+. +|.+. +.+|+.|.+..
T Consensus 121 ~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~ 186 (426)
T PRK15386 121 GSATDSIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHI 186 (426)
T ss_pred CCCCcccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Ccccc--cccCcEEEecc
Confidence 00011234456666666432211111000 1124689999999998664 56543 68999999875
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2e-07 Score=96.51 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=7.1
Q ss_pred hhhccceEEEEcc
Q 048809 755 KSLVRLKQMKIFH 767 (878)
Q Consensus 755 ~~l~~L~~L~i~~ 767 (878)
..+++|+.|++..
T Consensus 298 ~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 298 HTFPKLEYLNISE 310 (505)
T ss_pred cccccceeeeccc
Confidence 3445566665555
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=4.4e-07 Score=70.14 Aligned_cols=58 Identities=29% Similarity=0.465 Sum_probs=51.9
Q ss_pred CCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCc
Q 048809 273 TELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDM 330 (878)
Q Consensus 273 ~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l 330 (878)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+ ..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999999997 5678999999999999999876 6789999999999999864
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.3e-08 Score=97.90 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=54.0
Q ss_pred CccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecC
Q 048809 543 KVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCT 622 (878)
Q Consensus 543 ~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~ 622 (878)
+|+.|++++ ..++.-......++|.+|+.|.+.|..--..+...... -..|+.|+++.|..++....
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk------------N~~L~~lnlsm~sG~t~n~~ 252 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK------------NSNLVRLNLSMCSGFTENAL 252 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc------------cccceeeccccccccchhHH
Confidence 355555544 22332222223455566666666654322223222221 45666666666666665444
Q ss_pred CCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEecccc
Q 048809 623 GDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 623 ~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
.....+|..|.+|+++.|.-.+ ....+..- -++|+.|+|+||..
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi----se~l~~LNlsG~rr 298 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI----SETLTQLNLSGYRR 298 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchhhhHHHhhh----chhhhhhhhhhhHh
Confidence 3344556666666666665444 11111111 34566666666654
No 42
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.27 E-value=2.2e-08 Score=114.92 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=71.0
Q ss_pred cCCccEEEeecCCCcccccchhhhhhccCccEEEEecC-CcchhhhcccccccccCCCCccccccccceeecccCCCcce
Q 048809 541 FCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGC-QNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTS 619 (878)
Q Consensus 541 l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 619 (878)
++.|+.+.+.+|..+...........++.|++|++++| ......+.... .....+++|+.|+++.|..+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL--------LLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh--------hhhhhcCCcCccchhhhhccCc
Confidence 56777777777777666332234566777777777773 22211110000 0112367788888888776665
Q ss_pred ecCCCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEeccccc
Q 048809 620 FCTGDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDYD 671 (878)
Q Consensus 620 ~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~~ 671 (878)
.........+++|++|.+.+|..++ --..+.+. +++|++|+|++|..+
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCccc
Confidence 4433333447788888888887765 22223333 778888888888763
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.9e-07 Score=96.61 Aligned_cols=104 Identities=23% Similarity=0.254 Sum_probs=73.2
Q ss_pred ccCCCcEEEeeCCCCCCCCC--C-CCCCCccEEEeecCCCCCC--CchhhcCCCCCcEEEeeCCCCCCCCccc--cCCCC
Q 048809 225 VLKDCTAISLNNSNINELPQ--G-FECPQLKYFRIHNDHSLKI--PDNFFTGMTELRVLDFTRMHLLALPSSL--GLLQN 297 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~--~-~~~~~Lr~L~l~~~~~~~l--~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i--~~L~~ 297 (878)
..+++|.+++.++.+...+. . -.|+++|.|++++|-+... --.+...+++|+.|+|+.|.+...-.+. ..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 35678888888888776653 2 2788999999998832221 1234578889999999988875443332 36778
Q ss_pred CcEEEccCCCCC--Cc-ccccCcccCcEEEeeCC
Q 048809 298 LQTLSLDYCELG--DM-AIIGDLKKLVILALRGS 328 (878)
Q Consensus 298 L~~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~ 328 (878)
|..|.|+.|.++ ++ ...-..++|..|++.+|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 888899998876 34 45566777888888877
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.3e-06 Score=61.55 Aligned_cols=42 Identities=31% Similarity=0.501 Sum_probs=28.0
Q ss_pred CCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccc
Q 048809 273 TELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAII 314 (878)
Q Consensus 273 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i 314 (878)
++|++|++++|.|+.+|..+++|++|++|++++|.+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 367777777777777777677777777777777776655433
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=8.8e-08 Score=93.88 Aligned_cols=186 Identities=17% Similarity=0.113 Sum_probs=117.1
Q ss_pred cccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEecccccccceeeeccc
Q 048809 604 TQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVEN 681 (878)
Q Consensus 604 ~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~ 681 (878)
+.|++|++++ ..++.-........|..|+.|.|.+ ..+. +-..+.+ -..|+.|+|+.|..++....
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk-----N~~L~~lnlsm~sG~t~n~~----- 252 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK-----NSNLVRLNLSMCSGFTENAL----- 252 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc-----cccceeeccccccccchhHH-----
Confidence 4588888877 3344322222344677777777776 3444 3333333 35777777777765211110
Q ss_pred cccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCc--ccccCCCcEEEecccCCceEe-echhhhhhhc
Q 048809 682 GVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPS--STSFQNLTTVAVDFCYGMINI-LTSSTAKSLV 758 (878)
Q Consensus 682 ~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~l~~L~~L~i~~c~~l~~l-~~~~~~~~l~ 758 (878)
+ --+..++.|..|+++.|...+....- ..--++|+.|+++||.+--.. -.......+|
T Consensus 253 ---------------~----ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 253 ---------------Q----LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ---------------H----HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 0 12356788999999999865443111 123468999999998743221 1234567899
Q ss_pred cceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCC
Q 048809 759 RLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPN 833 (878)
Q Consensus 759 ~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~ 833 (878)
+|.+|++++|..++.-.. .....|+.|++|.++.|-.+- |.....+...|+|.+|++.||-.
T Consensus 314 ~l~~LDLSD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ceeeeccccccccCchHH-----------HHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccC
Confidence 999999999998865222 133468999999999998653 21112245689999999999843
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=3.5e-07 Score=101.63 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=45.0
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR 326 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~ 326 (878)
.+++|..|++.+|.+.++... +..+.+|++|++++|.|..+ ..+..+..|+.|++++|.++.+..+..+.+|+.++++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS 170 (414)
T ss_pred cccceeeeeccccchhhcccc-hhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence 345555555555554444432 24455555555555555544 2344445555555555555555555555555555555
Q ss_pred CCCcccchH
Q 048809 327 GSDMKELVG 335 (878)
Q Consensus 327 ~~~l~~lp~ 335 (878)
+|.+..+..
T Consensus 171 ~n~i~~ie~ 179 (414)
T KOG0531|consen 171 YNRIVDIEN 179 (414)
T ss_pred cchhhhhhh
Confidence 555544443
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.00 E-value=5.2e-07 Score=103.52 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=36.4
Q ss_pred hhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc
Q 048809 565 RGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK 644 (878)
Q Consensus 565 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~ 644 (878)
..+++|+.|++++|..+.+....... ..+++|+.|.+.+|..++..........+++|++|+++.|..++
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~----------~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALA----------SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHH----------hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 34455566666655544333222111 12556666666666654443332334456667777777766664
No 48
>PLN03150 hypothetical protein; Provisional
Probab=97.93 E-value=1.6e-05 Score=92.71 Aligned_cols=89 Identities=22% Similarity=0.470 Sum_probs=75.4
Q ss_pred CccEEEeecCCCC-CCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCcEEEccCCCCC-Cc-ccccCcccCcEEEe
Q 048809 250 QLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQTLSLDYCELG-DM-AIIGDLKKLVILAL 325 (878)
Q Consensus 250 ~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~l-~~i~~L~~L~~L~l 325 (878)
.++.|++++|.+. .+|.. +.++++|+.|+|++|.+. .+|..++.+++|++|+|++|.++ .+ ..+++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788999988654 56665 599999999999999996 78999999999999999999987 34 78999999999999
Q ss_pred eCCCcc-cchHhhcc
Q 048809 326 RGSDMK-ELVGEIGQ 339 (878)
Q Consensus 326 ~~~~l~-~lp~~i~~ 339 (878)
++|.++ .+|..++.
T Consensus 498 s~N~l~g~iP~~l~~ 512 (623)
T PLN03150 498 NGNSLSGRVPAALGG 512 (623)
T ss_pred cCCcccccCChHHhh
Confidence 999776 67877764
No 49
>PLN03150 hypothetical protein; Provisional
Probab=97.83 E-value=3.5e-05 Score=89.86 Aligned_cols=99 Identities=23% Similarity=0.414 Sum_probs=83.1
Q ss_pred CcEEEeeCCCCC-CCCCCC-CCCCccEEEeecCCCC-CCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCcEEEcc
Q 048809 229 CTAISLNNSNIN-ELPQGF-ECPQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQTLSLD 304 (878)
Q Consensus 229 lr~l~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~ 304 (878)
++.|+|+++.+. .+|..+ .+++|++|++++|.+. .+|.. ++.+++|++|+|++|.+. .+|+.++++++|++|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 678899998886 466555 8899999999999765 67766 599999999999999997 789999999999999999
Q ss_pred CCCCC-Cc-ccccC-cccCcEEEeeCC
Q 048809 305 YCELG-DM-AIIGD-LKKLVILALRGS 328 (878)
Q Consensus 305 ~~~l~-~l-~~i~~-L~~L~~L~l~~~ 328 (878)
+|.++ .+ ..++. +.++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 99976 33 55665 357788898887
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=2.9e-05 Score=72.50 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=74.6
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC--ccccCCCCCcEEEccC
Q 048809 228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP--SSLGLLQNLQTLSLDY 305 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~ 305 (878)
+...+++++|++..++....+++|.+|.+..|++..|.+.+-..+.+|.+|.|.+|+|.++- ..+..++.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 45677888888777777677888888888888888887776666677888888888887653 4456777888888888
Q ss_pred CCCCCc-----ccccCcccCcEEEeeCC
Q 048809 306 CELGDM-----AIIGDLKKLVILALRGS 328 (878)
Q Consensus 306 ~~l~~l-----~~i~~L~~L~~L~l~~~ 328 (878)
|.++.- --+.++++|++||..+-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 876532 34677888888877653
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.9e-05 Score=54.72 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=34.0
Q ss_pred CCCcEEEccCCCCCCccc-ccCcccCcEEEeeCCCcccchH
Q 048809 296 QNLQTLSLDYCELGDMAI-IGDLKKLVILALRGSDMKELVG 335 (878)
Q Consensus 296 ~~L~~L~L~~~~l~~l~~-i~~L~~L~~L~l~~~~l~~lp~ 335 (878)
++||+|++++|.+++++. +++|++|++|++++|.++.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 579999999999999855 9999999999999999887654
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=6e-06 Score=91.83 Aligned_cols=106 Identities=22% Similarity=0.347 Sum_probs=92.4
Q ss_pred ccCCCcEEEeeCCCCCCCCC-CCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEc
Q 048809 225 VLKDCTAISLNNSNINELPQ-GFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSL 303 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L 303 (878)
...++..+++.+|.++.+.. .-.+++|++|++++|.+.++.. +..+..|+.|++++|.|..+. .+..+++|+.+++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 35678999999999999988 5579999999999999999876 578889999999999998874 4666999999999
Q ss_pred cCCCCCCccc--ccCcccCcEEEeeCCCcccc
Q 048809 304 DYCELGDMAI--IGDLKKLVILALRGSDMKEL 333 (878)
Q Consensus 304 ~~~~l~~l~~--i~~L~~L~~L~l~~~~l~~l 333 (878)
++|.+..+.. ...+.+|+.+++.+|.+..+
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 9999998866 69999999999999976553
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=1.3e-06 Score=95.78 Aligned_cols=118 Identities=20% Similarity=0.211 Sum_probs=88.4
Q ss_pred cCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccc-cCCCCCcEEEc
Q 048809 226 LKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSL-GLLQNLQTLSL 303 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L 303 (878)
|.++...+++.|.+..+...+ -++.|+.|+|++|...++. .+..+.+|+.|||++|.+..+|.-= ..+ +|+.|++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence 455777788888776665555 4688999999999887775 3688999999999999988887432 333 3999999
Q ss_pred cCCCCCCcccccCcccCcEEEeeCCCcccch--HhhcccccCccc
Q 048809 304 DYCELGDMAIIGDLKKLVILALRGSDMKELV--GEIGQLTQLRLL 346 (878)
Q Consensus 304 ~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L 346 (878)
++|.++.+..+.+|++|+.||+++|-+..-. .-++.|..|+.|
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 9999999989999999999999988443211 125556666665
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=1.9e-05 Score=91.60 Aligned_cols=134 Identities=22% Similarity=0.275 Sum_probs=91.9
Q ss_pred cCCCcEEEeeCCCCC--CCCCCC--CCCCccEEEeecCCCCCC-CchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcE
Q 048809 226 LKDCTAISLNNSNIN--ELPQGF--ECPQLKYFRIHNDHSLKI-PDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQT 300 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~--~l~~~~--~~~~Lr~L~l~~~~~~~l-~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~ 300 (878)
..++++|++++...- .-+..+ .+|.||+|.+.+-....- ....+.++++|+.||+|+++++.+ .+|++|+|||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 346788888774421 111112 689999999988632211 124468899999999999999988 88999999999
Q ss_pred EEccCCCCCC---cccccCcccCcEEEeeCCCcccchHhhcccccCccc-ccccccCCcEEEccCCCCC
Q 048809 301 LSLDYCELGD---MAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL-IAPILSRLEELYIGESPIE 365 (878)
Q Consensus 301 L~L~~~~l~~---l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L-ip~~l~~L~~L~l~~~~~~ 365 (878)
|.+++=.++. +..+.+|++|++||+|..+....+.-+. +++ .+..+++|+.|+.++..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~-----qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIE-----QYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHH-----HHHHhcccCccccEEecCCcchh
Confidence 9999887663 4788999999999999875444332111 111 1224567777777665443
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.39 E-value=4.7e-06 Score=91.62 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=90.0
Q ss_pred cccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEc
Q 048809 224 DVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSL 303 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L 303 (878)
+..+.+++|+|++|.+.++.....+++|++||++.|++..+|.---..+ +|.+|++++|.++.+ ..|.+|++|+.||+
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccch
Confidence 3466789999999999988855589999999999999888886332344 499999999999887 67999999999999
Q ss_pred cCCCCC---CcccccCcccCcEEEeeCCCccc
Q 048809 304 DYCELG---DMAIIGDLKKLVILALRGSDMKE 332 (878)
Q Consensus 304 ~~~~l~---~l~~i~~L~~L~~L~l~~~~l~~ 332 (878)
++|-+. .+..++.|..|+.|.|.||.+--
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999865 45778899999999999986543
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00021 Score=66.91 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=78.6
Q ss_pred cEEEeeCCCCCCCCCC-CCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcccc-CCCCCcEEEccCCC
Q 048809 230 TAISLNNSNINELPQG-FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG-LLQNLQTLSLDYCE 307 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~ 307 (878)
|.+++.+..+..+... .-......+|+.+|.+..++. |.++..|.+|.|++|+|+.+-+.+. -+.+|..|.|.+|+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 4455555554433321 134567789999998888876 7999999999999999999877775 56789999999999
Q ss_pred CCCc---ccccCcccCcEEEeeCCCcccch
Q 048809 308 LGDM---AIIGDLKKLVILALRGSDMKELV 334 (878)
Q Consensus 308 l~~l---~~i~~L~~L~~L~l~~~~l~~lp 334 (878)
|..+ ..+..+++|++|.+-+|.+...+
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhccc
Confidence 7654 66778889999999988766544
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=7e-05 Score=86.97 Aligned_cols=52 Identities=23% Similarity=0.484 Sum_probs=25.9
Q ss_pred CCCCCcEEEccCCCCC--Cc-ccccCcccCcEEEeeCCCcccchHhhcccccCccc
Q 048809 294 LLQNLQTLSLDYCELG--DM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL 346 (878)
Q Consensus 294 ~L~~L~~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 346 (878)
.|++||.|.+++-.+. +. .-..++++|..||+++++++.+ .++++|++|++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 3455555555554422 12 3334455555555555555554 445555555555
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.32 E-value=1.7e-05 Score=69.09 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=55.8
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCC-CcccccCcccCcEEEe
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELG-DMAIIGDLKKLVILAL 325 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~-~l~~i~~L~~L~~L~l 325 (878)
...+|...++++|...++|+.+-.+++.+..|+|++|.|..+|..+..++.||.|+++.|.+. .+.-+..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 344556666666666666666555555666666666666666666666666666666666644 3355555666666666
Q ss_pred eCCCcccchHh
Q 048809 326 RGSDMKELVGE 336 (878)
Q Consensus 326 ~~~~l~~lp~~ 336 (878)
.++....+|-+
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 66655555544
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.00015 Score=71.84 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=67.1
Q ss_pred EEEeeCCCCCCCCCCC----CCCCccEEEeecCCCCCCC--chhhcCCCCCcEEEeeCCCCCCCCccc-cCCCCCcEEEc
Q 048809 231 AISLNNSNINELPQGF----ECPQLKYFRIHNDHSLKIP--DNFFTGMTELRVLDFTRMHLLALPSSL-GLLQNLQTLSL 303 (878)
Q Consensus 231 ~l~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~l~--~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L 303 (878)
-+.+.++.|....... .+.+++.|++.+|.+..-. ..++.++++|++|+|+.|.+..--.+. -.+++|++|.|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 4445555555443322 5678888888888554322 245678888999999988765433333 35678899999
Q ss_pred cCCCCC--Cc-ccccCcccCcEEEeeCCCcc
Q 048809 304 DYCELG--DM-AIIGDLKKLVILALRGSDMK 331 (878)
Q Consensus 304 ~~~~l~--~l-~~i~~L~~L~~L~l~~~~l~ 331 (878)
.++++. .. +.+..++.++.|.++.|++.
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 888865 34 66777888888887777443
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=7.7e-05 Score=73.75 Aligned_cols=60 Identities=28% Similarity=0.370 Sum_probs=36.1
Q ss_pred cCCCCCcEEEeeCCCCCC---CCccccCCCCCcEEEccCCCCCCc-ccc-cCcccCcEEEeeCCC
Q 048809 270 TGMTELRVLDFTRMHLLA---LPSSLGLLQNLQTLSLDYCELGDM-AII-GDLKKLVILALRGSD 329 (878)
Q Consensus 270 ~~l~~Lr~L~Ls~~~i~~---lp~~i~~L~~L~~L~L~~~~l~~l-~~i-~~L~~L~~L~l~~~~ 329 (878)
..+.+++.|||.+|.|+. +-.-+.++++|++|+|+.|.+..+ .++ -.+.+|++|-|.|+.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 455667777777776643 222235667777777777765543 444 355666666666653
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.17 E-value=4.1e-05 Score=66.80 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=75.0
Q ss_pred CcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCC
Q 048809 229 CTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYC 306 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 306 (878)
+..+++++|.++++|+.+ +++.+++|++.+|.+.++|.+ |..++.||-|+++.|.+...|+-|..|.+|-+|+..++
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 566889999999999877 677999999999999999999 69999999999999999999999999999999999999
Q ss_pred CCCCc
Q 048809 307 ELGDM 311 (878)
Q Consensus 307 ~l~~l 311 (878)
.+..+
T Consensus 134 a~~ei 138 (177)
T KOG4579|consen 134 ARAEI 138 (177)
T ss_pred ccccC
Confidence 86654
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.09 E-value=0.00014 Score=73.82 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=66.9
Q ss_pred cCCCcEEEeeCCCCCC-----CCCCC-CCCCccEEEeecCCCC----CCCch------hhcCCCCCcEEEeeCCCCC-CC
Q 048809 226 LKDCTAISLNNSNINE-----LPQGF-ECPQLKYFRIHNDHSL----KIPDN------FFTGMTELRVLDFTRMHLL-AL 288 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~----~l~~~------~~~~l~~Lr~L~Ls~~~i~-~l 288 (878)
...++.+++++|.+.. +.+.+ +.++||.-++++-..+ ++|+. .+-.+++|++||||+|.+. .-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4467788888887642 22222 4557777777765222 33322 2345668888888888762 22
Q ss_pred C----ccccCCCCCcEEEccCCCCCCc---------------ccccCcccCcEEEeeCCCcccc
Q 048809 289 P----SSLGLLQNLQTLSLDYCELGDM---------------AIIGDLKKLVILALRGSDMKEL 333 (878)
Q Consensus 289 p----~~i~~L~~L~~L~L~~~~l~~l---------------~~i~~L~~L~~L~l~~~~l~~l 333 (878)
+ +-|.+++.|++|.|.+|.+... .-+++=.+|+++...+|++..-
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 2 3356788888888888876532 1234556788888888766543
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.07 E-value=0.00016 Score=73.47 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=61.2
Q ss_pred cCCCcEEEeeCCCCCCCCCCC------CCCCccEEEeecCCCCC----CCchhhcCCCCCcEEEeeCCCCC-----CCCc
Q 048809 226 LKDCTAISLNNSNINELPQGF------ECPQLKYFRIHNDHSLK----IPDNFFTGMTELRVLDFTRMHLL-----ALPS 290 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~------~~~~Lr~L~l~~~~~~~----l~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~ 290 (878)
..++|.+....|.+..-+... ..+.|..+.+..|.+.. +-...|.+++||++|||.+|-++ .+-.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 456777877777766544322 34667777777663321 11223567777777777777663 2445
Q ss_pred cccCCCCCcEEEccCCCCCCc------ccc-cCcccCcEEEeeCCCcc
Q 048809 291 SLGLLQNLQTLSLDYCELGDM------AII-GDLKKLVILALRGSDMK 331 (878)
Q Consensus 291 ~i~~L~~L~~L~L~~~~l~~l------~~i-~~L~~L~~L~l~~~~l~ 331 (878)
.++.+++||.|++++|.++.= ..+ ...++|++|++.+|.++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 556666777777777765521 111 22456666666666554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=0.0006 Score=66.97 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=37.3
Q ss_pred hcCCCCCcEEEeeCC--CCC-CCCccccCCCCCcEEEccCCCCCCc---ccccCcccCcEEEeeCCCccc
Q 048809 269 FTGMTELRVLDFTRM--HLL-ALPSSLGLLQNLQTLSLDYCELGDM---AIIGDLKKLVILALRGSDMKE 332 (878)
Q Consensus 269 ~~~l~~Lr~L~Ls~~--~i~-~lp~~i~~L~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~ 332 (878)
|..+++|+.|+++.| ++. .++.....+++|++|++++|+++.+ ..+.++.+|..|++.+|..++
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 355566666666666 332 3444444556677777777665533 445566666677777664444
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.45 E-value=0.00045 Score=67.59 Aligned_cols=138 Identities=23% Similarity=0.286 Sum_probs=78.4
Q ss_pred cCCCCCcEEEeeCCCC----CCCC-------ccccCCCCCcEEEccCCCCC--Cc----ccccCcccCcEEEeeCCCccc
Q 048809 270 TGMTELRVLDFTRMHL----LALP-------SSLGLLQNLQTLSLDYCELG--DM----AIIGDLKKLVILALRGSDMKE 332 (878)
Q Consensus 270 ~~l~~Lr~L~Ls~~~i----~~lp-------~~i~~L~~L~~L~L~~~~l~--~l----~~i~~L~~L~~L~l~~~~l~~ 332 (878)
.+-++||+.+++.-.. .++| +.+-+|++|+..+|+.|-+. .+ .-|++-+.|.||.+++|.+..
T Consensus 55 a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 55 ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 4455666666554321 1222 33456777888888777543 22 456777888888888886654
Q ss_pred chHh-hcccccCccc-c---cccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcc-
Q 048809 333 LVGE-IGQLTQLRLL-I---APILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRD- 406 (878)
Q Consensus 333 lp~~-i~~L~~L~~L-i---p~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~- 406 (878)
+..+ |++ .|+|| . ...-+.|+......|++.- .........+....+|+.+.+..|.+. |..
T Consensus 135 ~aG~rigk--al~~la~nKKaa~kp~Le~vicgrNRlen--------gs~~~~a~~l~sh~~lk~vki~qNgIr--pegv 202 (388)
T COG5238 135 IAGGRIGK--ALFHLAYNKKAADKPKLEVVICGRNRLEN--------GSKELSAALLESHENLKEVKIQQNGIR--PEGV 202 (388)
T ss_pred cchhHHHH--HHHHHHHHhhhccCCCceEEEeccchhcc--------CcHHHHHHHHHhhcCceeEEeeecCcC--cchh
Confidence 3332 432 34444 1 1155678887777776541 111223344555678888888877765 332
Q ss_pred -------hhcccCCceEEEE
Q 048809 407 -------LSFFKMLQRYRIL 419 (878)
Q Consensus 407 -------~~~l~~L~~L~l~ 419 (878)
++...+|+.|++.
T Consensus 203 ~~L~~~gl~y~~~LevLDlq 222 (388)
T COG5238 203 TMLAFLGLFYSHSLEVLDLQ 222 (388)
T ss_pred HHHHHHHHHHhCcceeeecc
Confidence 1245666666664
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.0015 Score=64.16 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=74.5
Q ss_pred cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecC--CC-CCCCchhhcCCCCCcEEEeeCCCCCCC--CccccCCCCCcE
Q 048809 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHND--HS-LKIPDNFFTGMTELRVLDFTRMHLLAL--PSSLGLLQNLQT 300 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~--~~-~~l~~~~~~~l~~Lr~L~Ls~~~i~~l--p~~i~~L~~L~~ 300 (878)
...+.++++.+..++.+.....+++|++|.++.| +. ..++-- ..++++|++|++++|+|..+ -+.+..+.||..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 4456777777777777777778999999999999 32 223322 36779999999999998642 133567888999
Q ss_pred EEccCCCCCCc-----ccccCcccCcEEEeeCC
Q 048809 301 LSLDYCELGDM-----AIIGDLKKLVILALRGS 328 (878)
Q Consensus 301 L~L~~~~l~~l-----~~i~~L~~L~~L~l~~~ 328 (878)
|++.+|..+.+ ..+.-+++|.+||-...
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99999986544 34566777877775544
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.00079 Score=63.34 Aligned_cols=65 Identities=20% Similarity=0.369 Sum_probs=49.3
Q ss_pred cccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809 602 ELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 602 ~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
.+++++.|.+.+|..+.+++.+......++|+.|+|++|++++ .-...+.. +++|+.|.|.+-+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~----lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK----LKNLRRLHLYDLPY 188 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH----hhhhHHHHhcCchh
Confidence 3788888888899888888776555578899999999999888 33333333 78888888877665
No 68
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.89 E-value=0.07 Score=66.54 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=106.9
Q ss_pred CcEEEEEeCChHH---hhccCCCCccEEcC----CCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHH
Q 048809 3 GCKVLLTARSHDV---LSSKMDCQKNIFVD----VLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVA 75 (878)
Q Consensus 3 gs~iivTtR~~~v---~~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g 75 (878)
+-++|||||..-- +.. .......++. +|+.+|+.++|....|... -.+...+|.+.|+|.|+++..++
T Consensus 152 ~~~lv~~sR~~~~~~~~~l-~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANL-RVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CeEEEEEeCCCCCCchHhH-HhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHH
Confidence 4578899997421 110 0112244555 9999999999998776422 23456789999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHccCcchhhhhhhh-hcccccCCCCCChHHHHHHHhhhcccCCccHHHHHHHHhhccCccC
Q 048809 76 KALKNKSSLYVWKDALRQLKNKSLLGAAYSSLE-LSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQN 154 (878)
Q Consensus 76 ~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~l~-~sy~~L~~~~~~~~~~k~cf~~~~~fp~~~~~~li~~w~~~g~i~~ 154 (878)
..++...... ......+... ....+...+. --++.||+ +.++.+...|+++.+.. ++...-. |
T Consensus 227 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~l~~~v~~~l~~------~~~~~l~~~a~~~~~~~-~l~~~l~--~---- 290 (903)
T PRK04841 227 LSARQNNSSL--HDSARRLAGI-NASHLSDYLVEEVLDNVDL------ETRHFLLRCSVLRSMND-ALIVRVT--G---- 290 (903)
T ss_pred HHHhhCCCch--hhhhHhhcCC-CchhHHHHHHHHHHhcCCH------HHHHHHHHhcccccCCH-HHHHHHc--C----
Confidence 8876542211 1111111110 1113444432 23789999 99999999999984443 3332211 1
Q ss_pred CCcHHHHHHHHHHHHHHHHhcccccc-c-cCCcceehhHHHHHHHHHHH
Q 048809 155 INTVDEARDRAHTLVDKLKNSCLLLG-G-WRSEWFSMHDVVRDVAISIA 201 (878)
Q Consensus 155 ~~~~~~~~~~~~~~l~~L~~~~l~~~-~-~~~~~~~mhdli~~~~~~~~ 201 (878)
..+.. +.+.+|.+.+++.. . ++...|++|++++++.....
T Consensus 291 ---~~~~~----~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ---EENGQ----MRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CCcHH----HHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 11122 37888999998653 3 23347899999999988765
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.81 E-value=0.003 Score=36.90 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=15.4
Q ss_pred CCcEEEeeCCCCCCCCccccCC
Q 048809 274 ELRVLDFTRMHLLALPSSLGLL 295 (878)
Q Consensus 274 ~Lr~L~Ls~~~i~~lp~~i~~L 295 (878)
+|++||+++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4677888888777777766543
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.0013 Score=61.90 Aligned_cols=87 Identities=11% Similarity=0.181 Sum_probs=42.7
Q ss_pred ccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccccccccccccccccccccccc
Q 048809 710 LEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANY 789 (878)
Q Consensus 710 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~ 789 (878)
++.++-+++.....-...+..+++++.|.+.+|..+.+.....+.+-.++|+.|+|++|+.+|+--- ..
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~ 171 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------AC 171 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HH
Confidence 3444444444333333334455555555566665555544333444445666666666666554421 12
Q ss_pred ccccccchhhccccCccc
Q 048809 790 EIVFSELKELRLSSLESL 807 (878)
Q Consensus 790 ~~~~~~L~~L~l~~c~~L 807 (878)
+..+++|+.|.|.+.+..
T Consensus 172 L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHhhhhHHHHhcCchhh
Confidence 233555666665555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0077 Score=35.16 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=15.4
Q ss_pred cCcEEEeeCCCcccchHhhccc
Q 048809 319 KLVILALRGSDMKELVGEIGQL 340 (878)
Q Consensus 319 ~L~~L~l~~~~l~~lp~~i~~L 340 (878)
+|++||+++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4677788888777777766553
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.0015 Score=64.29 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=49.8
Q ss_pred CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc---ccccCcccCcEEEee
Q 048809 250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM---AIIGDLKKLVILALR 326 (878)
Q Consensus 250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~l~ 326 (878)
+.+.|++.|+.+..| .+..+++.|.||.||-|.|+.+ ..+..|++|+.|.|+.|.|.++ .-+.+|++|+.|-|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 444455555544444 2356777778888887777776 4566777777777777777765 345566667777666
Q ss_pred CC
Q 048809 327 GS 328 (878)
Q Consensus 327 ~~ 328 (878)
.|
T Consensus 97 EN 98 (388)
T KOG2123|consen 97 EN 98 (388)
T ss_pred cC
Confidence 65
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.0027 Score=62.54 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=70.8
Q ss_pred CCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCccccccc
Q 048809 271 GMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPI 350 (878)
Q Consensus 271 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~ 350 (878)
.+.+.+-|+..||.+..+. -+.+++.|++|.|+-|+|+.+..+..+++|+.|+|+.|.|..+.. +..|. +
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldE-L~YLk--------n 86 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDE-LEYLK--------N 86 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHH-HHHHh--------c
Confidence 4566778899999887651 234788899999999999999999999999999999987776543 22222 3
Q ss_pred ccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEE
Q 048809 351 LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLE 394 (878)
Q Consensus 351 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 394 (878)
+++|+.|.+..|.-.. .........-|.-+++|++|+
T Consensus 87 lpsLr~LWL~ENPCc~-------~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCG-------EAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCccc-------ccchhHHHHHHHHcccchhcc
Confidence 3445555665553220 111122234455667777765
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.48 E-value=0.03 Score=55.30 Aligned_cols=162 Identities=17% Similarity=0.200 Sum_probs=93.0
Q ss_pred cCCCcEEEeeCCCCCC-----CCCCC-CCCCccEEEeecCCCCCCCch----------hhcCCCCCcEEEeeCCCCC-CC
Q 048809 226 LKDCTAISLNNSNINE-----LPQGF-ECPQLKYFRIHNDHSLKIPDN----------FFTGMTELRVLDFTRMHLL-AL 288 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~l~~~----------~~~~l~~Lr~L~Ls~~~i~-~l 288 (878)
+..+..+++++|.|.. +...+ +-.+||.-+++.-..+..-+. .+-+|++|+..+||.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4457778888887653 22222 456777777776533332221 2467889999999999773 44
Q ss_pred C----ccccCCCCCcEEEccCCCCCCc--cccc-------------CcccCcEEEeeCCCcccchHhhcccccCcccccc
Q 048809 289 P----SSLGLLQNLQTLSLDYCELGDM--AIIG-------------DLKKLVILALRGSDMKELVGEIGQLTQLRLLIAP 349 (878)
Q Consensus 289 p----~~i~~L~~L~~L~L~~~~l~~l--~~i~-------------~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~ 349 (878)
| +-|+.-++|.+|.+++|.+..+ .-|+ +=+.|++.+...|++..-|....... +..
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~-----l~s 183 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL-----LES 183 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH-----HHh
Confidence 4 3457778899999999986543 2232 34567777777776655444321110 000
Q ss_pred cccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCC
Q 048809 350 ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDE 400 (878)
Q Consensus 350 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 400 (878)
. .+|+++.+..|.+....+ ..-....+..+.+|+.|++..|..
T Consensus 184 h-~~lk~vki~qNgIrpegv-------~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 184 H-ENLKEVKIQQNGIRPEGV-------TMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred h-cCceeEEeeecCcCcchh-------HHHHHHHHHHhCcceeeeccccch
Confidence 1 245566666665541100 011233455667777888776643
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.54 E-value=0.17 Score=45.80 Aligned_cols=101 Identities=17% Similarity=0.362 Sum_probs=44.8
Q ss_pred CCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEcc
Q 048809 228 DCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLD 304 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~ 304 (878)
+++.+.+.. .+..++... .+++|+.+.+.++ +..++...|.++..|+.+.+.+ .+..++ ..+..+.+|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 355555543 445554443 4556777776553 5666666667776677777754 444443 334556677777765
Q ss_pred CCCCCCc--ccccCcccCcEEEeeCCCcccch
Q 048809 305 YCELGDM--AIIGDLKKLVILALRGSDMKELV 334 (878)
Q Consensus 305 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp 334 (878)
.+ +..+ ..+.+. +|+.+.+.. .+..++
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred cc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 43 4433 445555 666666554 333443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.41 E-value=0.049 Score=29.42 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=6.9
Q ss_pred CCcEEEeeCCCCCCCC
Q 048809 274 ELRVLDFTRMHLLALP 289 (878)
Q Consensus 274 ~Lr~L~Ls~~~i~~lp 289 (878)
+||+|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555544
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.21 E-value=0.13 Score=46.55 Aligned_cols=95 Identities=17% Similarity=0.354 Sum_probs=56.6
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEE
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVIL 323 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L 323 (878)
.+.+|+.+.+.. .+..++...|..+.+|+.+++.++ +..++ ..+.++.+|+.+.+.. .+..+ ..+..+.+|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 567888888875 577788888999999999999875 77765 4467887899999976 44433 567778899999
Q ss_pred EeeCCCcccchHh-hcccccCccc
Q 048809 324 ALRGSDMKELVGE-IGQLTQLRLL 346 (878)
Q Consensus 324 ~l~~~~l~~lp~~-i~~L~~L~~L 346 (878)
++..+ +..++.. +.+. +|+.+
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EE
T ss_pred ccCcc-ccEEchhhhcCC-CceEE
Confidence 98664 5555543 4443 44433
No 78
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.37 E-value=0.43 Score=50.73 Aligned_cols=148 Identities=16% Similarity=0.033 Sum_probs=86.5
Q ss_pred CcEEEEEeCChHHhhcc-CCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhc-
Q 048809 3 GCKVLLTARSHDVLSSK-MDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKN- 80 (878)
Q Consensus 3 gs~iivTtR~~~v~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~- 80 (878)
.+-|.+|||...+.... -.....+++++++.+|..+++.+.++.... .--.+....|++.|+|.|-.+..++..+..
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRVRDF 208 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34466677765443320 112356899999999999999998842111 112456788999999999766555543211
Q ss_pred -----C--CChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHh-hhcccCC--ccHHHHHHHHhhcc
Q 048809 81 -----K--SSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFL-LIGYSYI--RNVKDLLYHGMGLG 150 (878)
Q Consensus 81 -----~--~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~-~~~~fp~--~~~~~li~~w~~~g 150 (878)
. .+.+..+ .+...+..+|..++. +.+..+. ..+.+.+ ..++++....
T Consensus 209 a~~~~~~~it~~~v~-------------~~l~~l~~~~~~l~~------~~~~~L~al~~~~~~~~~~~~~ia~~l---- 265 (305)
T TIGR00635 209 AQVRGQKIINRDIAL-------------KALEMLMIDELGLDE------IDRKLLSVLIEQFQGGPVGLKTLAAAL---- 265 (305)
T ss_pred HHHcCCCCcCHHHHH-------------HHHHHhCCCCCCCCH------HHHHHHHHHHHHhCCCcccHHHHHHHh----
Confidence 0 0111111 223335667888888 7777665 5566662 3444444432
Q ss_pred CccCCCcHHHHHHHHHHHHH-HHHhcccccccc
Q 048809 151 LFQNINTVDEARDRAHTLVD-KLKNSCLLLGGW 182 (878)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~l~-~L~~~~l~~~~~ 182 (878)
+.+...++. .++ .|++++|++..+
T Consensus 266 ----g~~~~~~~~----~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 266 ----GEDADTIED----VYEPYLLQIGFLQRTP 290 (305)
T ss_pred ----CCCcchHHH----hhhHHHHHcCCcccCC
Confidence 122233333 456 599999997553
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.28 E-value=0.09 Score=28.37 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=6.4
Q ss_pred cCcEEEeeCCCcccch
Q 048809 319 KLVILALRGSDMKELV 334 (878)
Q Consensus 319 ~L~~L~l~~~~l~~lp 334 (878)
+|+.|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 80
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.19 E-value=0.47 Score=50.93 Aligned_cols=152 Identities=13% Similarity=-0.019 Sum_probs=85.7
Q ss_pred cEEEEEeCChHHhhcc-CCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhcCC
Q 048809 4 CKVLLTARSHDVLSSK-MDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKS 82 (878)
Q Consensus 4 s~iivTtR~~~v~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~~~ 82 (878)
+-|.+|||...+.... -.....++++++++++..+++.+.++... -.--.+....|++.|+|.|-.+..+...+.
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~--- 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLRRVR--- 227 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHHHHH---
Confidence 4466777754443310 01234689999999999999999984211 112235788999999999954444443321
Q ss_pred ChHHHHHHHHHHHccCcch---hhhhhhhhcccccCCCCCChHHHHHHHh-hhcccC-C-ccHHHHHHHHhhccCccCCC
Q 048809 83 SLYVWKDALRQLKNKSLLG---AAYSSLELSYYHLEDEDLGGEELRKTFL-LIGYSY-I-RNVKDLLYHGMGLGLFQNIN 156 (878)
Q Consensus 83 ~~~~w~~~l~~l~~~~~~~---~~~~~l~~sy~~L~~~~~~~~~~k~cf~-~~~~fp-~-~~~~~li~~w~~~g~i~~~~ 156 (878)
.|..+.. ......+ .....+...|..|++ ..+..+. ....|+ + ..++.+.... +.
T Consensus 228 ---~~a~~~~--~~~I~~~~v~~~l~~~~~~~~~l~~------~~~~~l~~~~~~~~~~~~~~~~~a~~l--------g~ 288 (328)
T PRK00080 228 ---DFAQVKG--DGVITKEIADKALDMLGVDELGLDE------MDRKYLRTIIEKFGGGPVGLDTLAAAL--------GE 288 (328)
T ss_pred ---HHHHHcC--CCCCCHHHHHHHHHHhCCCcCCCCH------HHHHHHHHHHHHcCCCceeHHHHHHHH--------CC
Confidence 1211110 0001111 344556778888888 6677665 666777 3 3334443332 11
Q ss_pred cHHHHHHHHHHHHH-HHHhcccccccc
Q 048809 157 TVDEARDRAHTLVD-KLKNSCLLLGGW 182 (878)
Q Consensus 157 ~~~~~~~~~~~~l~-~L~~~~l~~~~~ 182 (878)
+...+++ .++ .|++.+|++..+
T Consensus 289 ~~~~~~~----~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 289 ERDTIED----VYEPYLIQQGFIQRTP 311 (328)
T ss_pred CcchHHH----HhhHHHHHcCCcccCC
Confidence 2223332 344 688899997553
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.91 E-value=0.014 Score=56.21 Aligned_cols=82 Identities=10% Similarity=0.099 Sum_probs=53.6
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC-cccccCcccCcEEEe
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD-MAIIGDLKKLVILAL 325 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-l~~i~~L~~L~~L~l 325 (878)
..+..+.||++.|+...+... |+.+..|..||++.|.|..+|..++.+..++.+++..|..+. |.+++++++++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 345566666666655555544 366666677777777777777777777777777776666553 466777777777777
Q ss_pred eCCC
Q 048809 326 RGSD 329 (878)
Q Consensus 326 ~~~~ 329 (878)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 6664
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.10 E-value=0.011 Score=56.72 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=73.4
Q ss_pred CCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHhhccc
Q 048809 262 LKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQL 340 (878)
Q Consensus 262 ~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L 340 (878)
..+|-.-+..++...+||++.|+...+-..++.++.|..|+++.+.+..+ .+++.+..++++++..|..+..|.+++++
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~ 110 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE 110 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc
Confidence 34453334778899999999999988888899999999999999998866 88999999999999999999999999998
Q ss_pred ccCccc
Q 048809 341 TQLRLL 346 (878)
Q Consensus 341 ~~L~~L 346 (878)
++++.+
T Consensus 111 ~~~k~~ 116 (326)
T KOG0473|consen 111 PHPKKN 116 (326)
T ss_pred CCcchh
Confidence 888776
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.54 E-value=0.41 Score=29.15 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=13.9
Q ss_pred CCCCcEEEeeCCCCCCCCccc
Q 048809 272 MTELRVLDFTRMHLLALPSSL 292 (878)
Q Consensus 272 l~~Lr~L~Ls~~~i~~lp~~i 292 (878)
+.+|++|+|++|.|+.+|+.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776543
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.54 E-value=0.41 Score=29.15 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=13.9
Q ss_pred CCCCcEEEeeCCCCCCCCccc
Q 048809 272 MTELRVLDFTRMHLLALPSSL 292 (878)
Q Consensus 272 l~~Lr~L~Ls~~~i~~lp~~i 292 (878)
+.+|++|+|++|.|+.+|+.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776543
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.40 E-value=0.61 Score=28.35 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=19.1
Q ss_pred CCCccEEEeecCCCCCCCchhhc
Q 048809 248 CPQLKYFRIHNDHSLKIPDNFFT 270 (878)
Q Consensus 248 ~~~Lr~L~l~~~~~~~l~~~~~~ 270 (878)
+++|++|++.+|.+..+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788999999999999988765
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.40 E-value=0.61 Score=28.35 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=19.1
Q ss_pred CCCccEEEeecCCCCCCCchhhc
Q 048809 248 CPQLKYFRIHNDHSLKIPDNFFT 270 (878)
Q Consensus 248 ~~~Lr~L~l~~~~~~~l~~~~~~ 270 (878)
+++|++|++.+|.+..+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788999999999999988765
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.15 E-value=0.69 Score=28.17 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=11.9
Q ss_pred cCCcceEEEcCCCCcc
Q 048809 820 FPSLERLVVEDCPNMS 835 (878)
Q Consensus 820 l~sL~~L~i~~C~~L~ 835 (878)
+|+|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4677888888887765
No 88
>COG3903 Predicted ATPase [General function prediction only]
Probab=82.67 E-value=3.5 Score=44.11 Aligned_cols=180 Identities=18% Similarity=0.103 Sum_probs=112.9
Q ss_pred EEEEEeCChHHhhccCCCCccEEcCCCChH-HHHHHHHHHhC----CCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809 5 KVLLTARSHDVLSSKMDCQKNIFVDVLNAK-EAWSLFEKMTG----DCIENGELKSVATEIVKECAGLPIAILPVAKALK 79 (878)
Q Consensus 5 ~iivTtR~~~v~~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~ 79 (878)
.|+.|+|..-. +..+..+.+.+|+.. ++.++|...|. .-.....-...+.+|.++..|.|+||...++..+
T Consensus 119 ~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~ 194 (414)
T COG3903 119 AILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVR 194 (414)
T ss_pred hhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 35666664433 445667888888755 79999998872 2233345567899999999999999999999988
Q ss_pred cCCChHHHHHHHHH----HHccC-----cchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccHHHHHHHHhhc
Q 048809 80 NKSSLYVWKDALRQ----LKNKS-----LLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNVKDLLYHGMGL 149 (878)
Q Consensus 80 ~~~~~~~w~~~l~~----l~~~~-----~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~~~li~~w~~~ 149 (878)
.-. ..+--+-++. +.... ........+.+||.-|.. -.+--|.-++.|. ++.-+ ...|.+-
T Consensus 195 sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg------we~~~~~rLa~~~g~f~~~--l~~~~a~ 265 (414)
T COG3903 195 SLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG------WERALFGRLAVFVGGFDLG--LALAVAA 265 (414)
T ss_pred hcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh------HHHHHhcchhhhhhhhccc--HHHHHhc
Confidence 763 2222222221 11110 012667889999999998 7888899999998 55543 3345444
Q ss_pred cCccCCCcHHHHHHHHHHHHHHHHhccccccc--cCCcceehhHHHHHHHHHHHc
Q 048809 150 GLFQNINTVDEARDRAHTLVDKLKNSCLLLGG--WRSEWFSMHDVVRDVAISIAS 202 (878)
Q Consensus 150 g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~--~~~~~~~mhdli~~~~~~~~~ 202 (878)
|-- ..++.+..| +-+..+++++++... ...-.++.-+.+|.++.....
T Consensus 266 g~~----~~~~~y~~~-~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 266 GAD----VDVPRYLVL-LALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred CCc----cccchHHHH-HHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 421 011222222 345567888887543 223346666667777665543
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.64 E-value=0.76 Score=27.99 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=9.9
Q ss_pred ccceEEEEccccccccc
Q 048809 758 VRLKQMKIFHCKMITEI 774 (878)
Q Consensus 758 ~~L~~L~i~~C~~l~~~ 774 (878)
++|+.|+|++|+++++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 45666666666655543
No 90
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=79.10 E-value=9 Score=39.67 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=43.8
Q ss_pred CccEEcCCCChHHHHHHHHHHh---CCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHH
Q 048809 23 QKNIFVDVLNAKEAWSLFEKMT---GDCIENGELKSVATEIVKECAGLPIAILPVAKAL 78 (878)
Q Consensus 23 ~~~~~l~~L~~~~~~~Lf~~~~---~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l 78 (878)
...+++++++.+|..+++...+ |......--.+....|++.++|.|..|+.++..+
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 3467899999999999999877 3211112234788999999999999999999887
No 91
>PRK06893 DNA replication initiation factor; Validated
Probab=76.43 E-value=7.8 Score=39.05 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=45.9
Q ss_pred CCcEEEEEeCC----------hHHhhccCCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchH
Q 048809 2 GGCKVLLTARS----------HDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAI 71 (878)
Q Consensus 2 ~gs~iivTtR~----------~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~ 71 (878)
.|..|||||.+ ++++.+ +.....++++++++++.++++++++.... -.--+++..-|++.+.|-.-++
T Consensus 123 ~~~~illits~~~p~~l~~~~~~L~sR-l~~g~~~~l~~pd~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 123 QGKTLLLISADCSPHALSIKLPDLASR-LTWGEIYQLNDLTDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTL 200 (229)
T ss_pred cCCcEEEEeCCCChHHccccchhHHHH-HhcCCeeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHH
Confidence 35666555443 466665 66667899999999999999999983111 1112456777888887755444
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.19 E-value=5.3 Score=24.36 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=5.2
Q ss_pred CCcEEEccCCCC
Q 048809 297 NLQTLSLDYCEL 308 (878)
Q Consensus 297 ~L~~L~L~~~~l 308 (878)
+|++|+++.|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444444444443
No 93
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=65.42 E-value=15 Score=36.75 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=31.2
Q ss_pred CccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHH
Q 048809 23 QKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILP 73 (878)
Q Consensus 23 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~ 73 (878)
...+.+++|+.+++++++...+.....-+.-.+...+|...+||.|..|.-
T Consensus 183 ~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 183 FSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp --EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred cceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 445999999999999999998732211122345569999999999988753
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.73 E-value=4.3 Score=24.70 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=12.7
Q ss_pred CCcEEEeeCCCCCCCCc
Q 048809 274 ELRVLDFTRMHLLALPS 290 (878)
Q Consensus 274 ~Lr~L~Ls~~~i~~lp~ 290 (878)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777775
No 95
>COG3899 Predicted ATPase [General function prediction only]
Probab=61.62 E-value=65 Score=39.48 Aligned_cols=118 Identities=15% Similarity=0.071 Sum_probs=82.8
Q ss_pred CCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhcC------CChHHHHHHHHHH
Q 048809 21 DCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNK------SSLYVWKDALRQL 94 (878)
Q Consensus 21 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~~------~~~~~w~~~l~~l 94 (878)
.+.+.+.+.||+..|.-.|.....+.. .....+....|++|-+|+|+-+.-+=..+... .+...|..=...+
T Consensus 209 ~~i~~I~L~PL~~~d~~~lV~~~l~~~--~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i 286 (849)
T COG3899 209 TNITTITLAPLSRADTNQLVAATLGCT--KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL 286 (849)
T ss_pred CceeEEecCcCchhhHHHHHHHHhCCc--ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence 334689999999999999999888642 23345678899999999999998887777764 2555664322222
Q ss_pred HccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccHHHHHHHH
Q 048809 95 KNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNVKDLLYHG 146 (878)
Q Consensus 95 ~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~~~li~~w 146 (878)
.....-+++.+.+..-.+.||. ..|.....-|++- .+....|...|
T Consensus 287 ~~~~~~~~vv~~l~~rl~kL~~------~t~~Vl~~AA~iG~~F~l~~La~l~ 333 (849)
T COG3899 287 GILATTDAVVEFLAARLQKLPG------TTREVLKAAACIGNRFDLDTLAALA 333 (849)
T ss_pred CCchhhHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCccCCHHHHHHHH
Confidence 2222222445567788899999 8899999988886 66655555444
No 96
>PRK09087 hypothetical protein; Validated
Probab=60.93 E-value=33 Score=34.44 Aligned_cols=90 Identities=14% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCcEEEEEeC---------ChHHhhccCCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHH
Q 048809 2 GGCKVLLTAR---------SHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAIL 72 (878)
Q Consensus 2 ~gs~iivTtR---------~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~ 72 (878)
.|..||+|++ .++...+ +.....++++++++++-.+++++++.... -.--+++..-|++.+.|..-++.
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~SR-l~~gl~~~l~~pd~e~~~~iL~~~~~~~~-~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKSR-LKAATVVEIGEPDDALLSQVIFKLFADRQ-LYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHHH-HhCCceeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhhhHHHHH
Confidence 4677899887 3444444 55667899999999999999999993211 11124667777777777666554
Q ss_pred HHHHHH-----h-c-CCChHHHHHHHHH
Q 048809 73 PVAKAL-----K-N-KSSLYVWKDALRQ 93 (878)
Q Consensus 73 ~~g~~l-----~-~-~~~~~~w~~~l~~ 93 (878)
.+-..| . + +.+....+++++.
T Consensus 194 ~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 194 TIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 322222 1 2 2355666666654
No 97
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=54.74 E-value=7.6 Score=22.88 Aligned_cols=12 Identities=42% Similarity=0.537 Sum_probs=4.7
Q ss_pred CCCcEEEccCCC
Q 048809 296 QNLQTLSLDYCE 307 (878)
Q Consensus 296 ~~L~~L~L~~~~ 307 (878)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 344444544444
No 98
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.04 E-value=15 Score=22.74 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=6.1
Q ss_pred CCcEEEeeCCCC
Q 048809 274 ELRVLDFTRMHL 285 (878)
Q Consensus 274 ~Lr~L~Ls~~~i 285 (878)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 99
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=38.59 E-value=1.3e+02 Score=29.93 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=45.6
Q ss_pred CcEEEEEeCChH---------HhhccCCCCccEEcCCCChHHHHHHHHHHhC-CCCCChhhHHHHHHHHHHcCCCcchHH
Q 048809 3 GCKVLLTARSHD---------VLSSKMDCQKNIFVDVLNAKEAWSLFEKMTG-DCIENGELKSVATEIVKECAGLPIAIL 72 (878)
Q Consensus 3 gs~iivTtR~~~---------v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~-~~~~~~~~~~~~~~i~~~c~g~Pla~~ 72 (878)
|.+||+||+..- +... ......+++.++++++-..+++..+. ... .--.+..+.+++.+.|.|..+.
T Consensus 123 ~~~iIits~~~~~~~~~~~~~L~~r-~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~ 199 (226)
T TIGR03420 123 GGRLLIAGRAAPAQLPLRLPDLRTR-LAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLM 199 (226)
T ss_pred CCeEEEECCCChHHCCcccHHHHHH-HhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHH
Confidence 457888887432 2222 22346789999999999999988662 111 1123456777778888888776
Q ss_pred HHH
Q 048809 73 PVA 75 (878)
Q Consensus 73 ~~g 75 (878)
-+-
T Consensus 200 ~~l 202 (226)
T TIGR03420 200 ALL 202 (226)
T ss_pred HHH
Confidence 653
No 100
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.18 E-value=1.4e+02 Score=35.63 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=104.7
Q ss_pred CcEEEEEeCChHHhhcc-CCC-CccEEc----CCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHH
Q 048809 3 GCKVLLTARSHDVLSSK-MDC-QKNIFV----DVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAK 76 (878)
Q Consensus 3 gs~iivTtR~~~v~~~~-~~~-~~~~~l----~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~ 76 (878)
|-..|||||+.--..-+ +.. +...++ =.++.+|+-++|....+..- .+.-++.+.+...|=+-|+..++=
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L----d~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL----DAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC----ChHHHHHHHhhcccHHHHHHHHHH
Confidence 55789999965332210 111 112222 24689999999988764322 233467788889999999998888
Q ss_pred HHhcCCChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccCCccHHHHHHHHhhccCccCCC
Q 048809 77 ALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNIN 156 (878)
Q Consensus 77 ~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp~~~~~~li~~w~~~g~i~~~~ 156 (878)
.+++..+.+.--..+.-......+.=+ .==+|.||+ ++|.-.+-+|+++.+. .+|+..-.+++
T Consensus 236 a~~~~~~~~q~~~~LsG~~~~l~dYL~----eeVld~Lp~------~l~~FLl~~svl~~f~-~eL~~~Ltg~~------ 298 (894)
T COG2909 236 ALRNNTSAEQSLRGLSGAASHLSDYLV----EEVLDRLPP------ELRDFLLQTSVLSRFN-DELCNALTGEE------ 298 (894)
T ss_pred HccCCCcHHHHhhhccchHHHHHHHHH----HHHHhcCCH------HHHHHHHHHHhHHHhh-HHHHHHHhcCC------
Confidence 888544444333322211111101000 112478999 9999999999987322 34444332221
Q ss_pred cHHHHHHHHHHHHHHHHhcccccc--ccCCcceehhHHHHHHHHHHHcc
Q 048809 157 TVDEARDRAHTLVDKLKNSCLLLG--GWRSEWFSMHDVVRDVAISIASR 203 (878)
Q Consensus 157 ~~~~~~~~~~~~l~~L~~~~l~~~--~~~~~~~~mhdli~~~~~~~~~~ 203 (878)
+ + -+++++|.+++++.. .+....|+.|.++.||-....+.
T Consensus 299 ---n-g---~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 299 ---N-G---QAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ---c-H---HHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 1 1 137899999998863 35677899999999997766554
No 101
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=32.85 E-value=1.8e+02 Score=24.52 Aligned_cols=62 Identities=13% Similarity=0.276 Sum_probs=48.0
Q ss_pred HHHHHHHHHh---C-CCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhcCC-ChHHHHHHHHHHHc
Q 048809 35 EAWSLFEKMT---G-DCIENGELKSVATEIVKECAGLPIAILPVAKALKNKS-SLYVWKDALRQLKN 96 (878)
Q Consensus 35 ~~~~Lf~~~~---~-~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~~~-~~~~w~~~l~~l~~ 96 (878)
|.|++=+-.- | +-.+.+.....|-+.+++..-.|+|+.++-+.-.+.. ..+.|..+++++..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeikp 88 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIKP 88 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHhH
Confidence 6777755432 4 5678888999999999999999999999998765543 45678888887654
No 102
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=31.26 E-value=3.9e+02 Score=29.32 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=58.9
Q ss_pred EEEEeCChHHhhccCC-------CCccEEcCCCChHHHHHHHHHHh--C--CCCCC-hhhHHHHHHHHHHcCCCcchHHH
Q 048809 6 VLLTARSHDVLSSKMD-------CQKNIFVDVLNAKEAWSLFEKMT--G--DCIEN-GELKSVATEIVKECAGLPIAILP 73 (878)
Q Consensus 6 iivTtR~~~v~~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~--~--~~~~~-~~~~~~~~~i~~~c~g~Pla~~~ 73 (878)
||.+++..++... .. ....+.+.+++.++..+++..++ + ..... ..++.+++..+...|..+.|+.+
T Consensus 176 vI~i~~~~~~~~~-l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~l 254 (394)
T PRK00411 176 VIGISSDLTFLYI-LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDL 254 (394)
T ss_pred EEEEECCcchhhh-cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHH
Confidence 5666665544332 11 12467999999999999999887 2 11222 22333344343335668888887
Q ss_pred HHHHHh-----cC--CChHHHHHHHHHHHccCcchhhhhhhhhcccccCC
Q 048809 74 VAKALK-----NK--SSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLED 116 (878)
Q Consensus 74 ~g~~l~-----~~--~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~ 116 (878)
+-.+.. +. -+.++++++.++... ....-.+..||.
T Consensus 255 l~~a~~~a~~~~~~~I~~~~v~~a~~~~~~--------~~~~~~~~~L~~ 296 (394)
T PRK00411 255 LRRAGLIAEREGSRKVTEEDVRKAYEKSEI--------VHLSEVLRTLPL 296 (394)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHHH--------HHHHHHHhcCCH
Confidence 754321 11 255667766665421 122345778888
No 103
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=30.24 E-value=1.1e+02 Score=33.09 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=44.4
Q ss_pred EEEEeCChHHhhccCCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHH
Q 048809 6 VLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVA 75 (878)
Q Consensus 6 iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g 75 (878)
|++|++-..+......-...+.+.+++.++..+.+...+.... --.+....|++.++|.|..+..+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555554444333222346899999999999999987432111 123456789999999998776554
No 104
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=29.80 E-value=1.3e+02 Score=25.56 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHh---C-CCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhcCCChH-HHHHHHHHHHcc
Q 048809 33 AKEAWSLFEKMT---G-DCIENGELKSVATEIVKECAGLPIAILPVAKALKNKSSLY-VWKDALRQLKNK 97 (878)
Q Consensus 33 ~~~~~~Lf~~~~---~-~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~~~~~~-~w~~~l~~l~~~ 97 (878)
.-|.|++=+-.- + +-.+.+.....|-+.+++..-.|+|+.++-+.-.+..... .|..+++++...
T Consensus 23 ~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElkPt 92 (108)
T PF02284_consen 23 DIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELKPT 92 (108)
T ss_dssp T--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHhhH
Confidence 345666544322 3 5577888999999999999999999999998876654333 788888876553
No 105
>PRK08727 hypothetical protein; Validated
Probab=27.28 E-value=1.3e+02 Score=30.18 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=43.9
Q ss_pred CCcEEEEEeCC---------hHHhhccCCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcch
Q 048809 2 GGCKVLLTARS---------HDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIA 70 (878)
Q Consensus 2 ~gs~iivTtR~---------~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 70 (878)
+|..||+|++. +++..+ +.....++++++++++-.++++++|.... -.--++...-|++.+.|-.-+
T Consensus 125 ~~~~vI~ts~~~p~~l~~~~~dL~SR-l~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 125 AGITLLYTARQMPDGLALVLPDLRSR-LAQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAG 200 (233)
T ss_pred cCCeEEEECCCChhhhhhhhHHHHHH-HhcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHH
Confidence 46669999973 333333 33456889999999999999999882111 112245667778888764433
No 106
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=23.71 E-value=1.8e+02 Score=31.71 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=45.3
Q ss_pred CcEEEEEeCChH-HhhccCCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHH
Q 048809 3 GCKVLLTARSHD-VLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVA 75 (878)
Q Consensus 3 gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g 75 (878)
++.+|++|.+.+ +......-...+.+.+++.++..+.+....+... .+....+++.++|.|..+..+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHHh
Confidence 455666666553 3332233356899999999999999988653211 1122678999999998776654
No 107
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=22.66 E-value=1.7e+02 Score=30.99 Aligned_cols=59 Identities=25% Similarity=0.206 Sum_probs=39.2
Q ss_pred ChHHhhccCCCCccEEcCCCChHHHHHHHHHHh--CCCCCChhhHHHHHHHHHHcCCCcchH
Q 048809 12 SHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMT--GDCIENGELKSVATEIVKECAGLPIAI 71 (878)
Q Consensus 12 ~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~--~~~~~~~~~~~~~~~i~~~c~g~Pla~ 71 (878)
+..++.. +...++++|++++.+|+..++..++ |-......-+...+++.--.+|.|--+
T Consensus 246 d~~~~~~-l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 246 DPRVAES-LKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred cHHHHHH-hcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 3444443 4444589999999999999999988 311111334456666777778888543
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=21.74 E-value=4.1e+02 Score=28.82 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=40.5
Q ss_pred CcEEEEEeCChHHhhcc----CCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCc
Q 048809 3 GCKVLLTARSHDVLSSK----MDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLP 68 (878)
Q Consensus 3 gs~iivTtR~~~v~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~P 68 (878)
+.+||+||+..+....+ ...+..+.+...+.++.+++|+.++.......+. --..+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 56788888855433221 1235679999999999999999988322211111 1355666777754
Done!