Query 048809
Match_columns 878
No_of_seqs 458 out of 4181
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 23:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-36 3.6E-41 366.2 24.5 470 227-769 50-549 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.4E-36 1.2E-40 361.7 25.6 123 728-868 628-763 (768)
3 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-34 3.9E-39 340.9 28.5 130 216-346 22-158 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-33 4.4E-38 336.5 34.2 556 216-854 15-618 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-33 1.9E-37 331.0 39.6 552 230-855 7-594 (680)
6 3t6q_A CD180 antigen; protein- 100.0 1.5E-33 5.1E-38 331.4 30.0 510 224-854 30-556 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.2E-32 4.2E-37 323.6 33.9 492 225-834 55-560 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-32 8.3E-37 321.1 32.9 488 225-834 54-558 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 3.7E-30 1.3E-34 300.4 33.3 180 216-419 18-208 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-29 4.9E-34 307.4 32.4 500 216-832 15-558 (844)
11 2z7x_B TOLL-like receptor 1, v 100.0 3.1E-30 1.1E-34 297.0 22.8 460 230-855 3-478 (520)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-28 3.6E-33 299.8 34.0 526 230-854 7-556 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.6E-29 9E-34 291.5 26.9 482 216-810 16-513 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 8.1E-29 2.8E-33 289.0 28.2 497 229-855 9-528 (570)
15 4g8a_A TOLL-like receptor 4; l 100.0 7.6E-28 2.6E-32 284.9 31.3 182 216-418 42-231 (635)
16 2z81_A CD282 antigen, TOLL-lik 100.0 3.8E-28 1.3E-32 281.8 28.1 481 231-856 9-508 (549)
17 4eco_A Uncharacterized protein 100.0 7.8E-28 2.7E-32 282.3 24.5 34 227-260 81-116 (636)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.2E-28 1.8E-32 280.8 21.7 459 228-854 32-506 (562)
19 2a5y_B CED-4; apoptosis; HET: 100.0 3.6E-29 1.2E-33 287.2 9.3 188 2-205 264-472 (549)
20 4ecn_A Leucine-rich repeat pro 100.0 8.5E-27 2.9E-31 277.5 29.7 408 227-748 323-842 (876)
21 4g8a_A TOLL-like receptor 4; l 99.9 3E-25 1E-29 262.6 30.6 134 225-365 74-214 (635)
22 2z7x_B TOLL-like receptor 1, v 99.9 3.2E-26 1.1E-30 263.5 21.4 180 217-420 12-199 (520)
23 4ecn_A Leucine-rich repeat pro 99.9 3.1E-26 1.1E-30 272.6 21.0 135 249-407 323-537 (876)
24 4eco_A Uncharacterized protein 99.9 9E-26 3.1E-30 264.7 22.3 318 259-669 193-547 (636)
25 1o6v_A Internalin A; bacterial 99.9 2.9E-24 9.9E-29 243.0 29.2 343 226-670 45-387 (466)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-24 4.3E-29 252.3 22.5 451 216-769 42-508 (562)
27 1o6v_A Internalin A; bacterial 99.9 2.7E-23 9.4E-28 235.0 28.4 122 247-397 44-165 (466)
28 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-23 5.6E-28 234.7 23.3 159 226-419 41-199 (457)
29 1jl5_A Outer protein YOPM; leu 99.9 4.6E-24 1.6E-28 238.9 18.8 85 247-334 9-107 (454)
30 3v47_A TOLL-like receptor 5B a 99.9 3.2E-23 1.1E-27 234.3 25.9 149 230-403 13-169 (455)
31 3v47_A TOLL-like receptor 5B a 99.9 3.7E-23 1.3E-27 233.7 24.6 366 216-670 21-407 (455)
32 1jl5_A Outer protein YOPM; leu 99.9 1.6E-23 5.5E-28 234.5 19.0 115 271-418 9-138 (454)
33 3bz5_A Internalin-J, INLJ; leu 99.9 8.7E-23 3E-27 228.8 23.1 120 247-399 40-159 (457)
34 4fmz_A Internalin; leucine ric 99.9 1.5E-22 5E-27 220.0 23.7 165 225-418 42-206 (347)
35 2id5_A Lingo-1, leucine rich r 99.9 4.6E-22 1.6E-26 226.0 28.0 314 229-670 13-332 (477)
36 4fmz_A Internalin; leucine ric 99.9 8E-22 2.7E-26 214.1 26.8 303 247-641 42-344 (347)
37 3o6n_A APL1; leucine-rich repe 99.9 3.3E-22 1.1E-26 220.8 23.9 306 245-670 41-351 (390)
38 3oja_B Anopheles plasmodium-re 99.9 1.7E-21 5.7E-26 227.2 23.4 307 245-670 47-357 (597)
39 3o6n_A APL1; leucine-rich repe 99.9 2.1E-21 7.1E-26 214.4 22.6 280 225-578 43-328 (390)
40 3oja_B Anopheles plasmodium-re 99.9 9E-21 3.1E-25 221.0 22.5 280 226-579 50-335 (597)
41 2id5_A Lingo-1, leucine rich r 99.9 1.3E-20 4.4E-25 214.1 22.8 180 216-419 22-208 (477)
42 3ogk_B Coronatine-insensitive 99.9 2.2E-22 7.6E-27 235.6 8.4 62 707-769 462-524 (592)
43 3sfz_A APAF-1, apoptotic pepti 99.8 3E-21 1E-25 246.5 15.9 182 1-204 255-452 (1249)
44 1vt4_I APAF-1 related killer D 99.8 1.2E-21 4.2E-26 226.4 10.1 163 2-198 264-437 (1221)
45 3ogk_B Coronatine-insensitive 99.8 9.4E-22 3.2E-26 230.3 7.8 111 706-830 434-547 (592)
46 1xku_A Decorin; proteoglycan, 99.8 8.1E-19 2.8E-23 188.8 26.3 155 228-406 32-189 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 1.5E-19 5E-24 194.7 19.7 154 228-406 34-190 (332)
48 2p1m_B Transport inhibitor res 99.8 7.4E-21 2.5E-25 222.8 9.4 215 540-806 287-518 (594)
49 4fcg_A Uncharacterized protein 99.8 3.6E-19 1.2E-23 190.6 20.3 86 250-336 82-169 (328)
50 4fcg_A Uncharacterized protein 99.8 3.7E-19 1.3E-23 190.5 18.0 108 227-335 81-200 (328)
51 1xku_A Decorin; proteoglycan, 99.8 1E-17 3.5E-22 180.1 23.0 167 224-418 49-223 (330)
52 2ft3_A Biglycan; proteoglycan, 99.8 8.4E-18 2.9E-22 180.9 20.4 166 224-418 51-224 (332)
53 1z6t_A APAF-1, apoptotic prote 99.8 2.1E-18 7.1E-23 201.1 15.8 177 1-201 255-449 (591)
54 3g06_A SSPH2 (leucine-rich rep 99.8 4.1E-17 1.4E-21 188.1 25.2 260 228-584 41-300 (622)
55 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-18 9.1E-23 182.8 14.2 169 227-419 50-229 (313)
56 2p1m_B Transport inhibitor res 99.8 1.1E-19 3.7E-24 212.9 2.7 233 483-767 288-540 (594)
57 2z80_A TOLL-like receptor 2, v 99.7 1.6E-17 5.6E-22 180.3 17.8 113 540-670 196-313 (353)
58 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-19 3.7E-24 205.7 -0.9 82 250-331 4-98 (461)
59 1ogq_A PGIP-2, polygalacturona 99.7 9.2E-18 3.1E-22 178.6 13.2 129 249-401 50-187 (313)
60 1ozn_A Reticulon 4 receptor; N 99.7 1.8E-17 6.2E-22 174.1 14.8 173 224-419 29-209 (285)
61 2z66_A Variable lymphocyte rec 99.7 2.3E-17 7.9E-22 175.3 15.4 170 226-418 27-206 (306)
62 3g06_A SSPH2 (leucine-rich rep 99.7 2.3E-16 7.9E-21 181.8 24.5 119 249-405 40-158 (622)
63 3zyj_A Leucine-rich repeat-con 99.7 1.1E-16 3.7E-21 179.4 18.7 241 230-526 46-290 (440)
64 3zyi_A Leucine-rich repeat-con 99.7 1.1E-16 3.9E-21 179.9 18.7 242 229-526 56-301 (452)
65 2z80_A TOLL-like receptor 2, v 99.7 5.9E-17 2E-21 175.9 15.7 165 231-419 35-206 (353)
66 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-17 5.4E-22 177.3 8.9 259 255-619 16-277 (317)
67 3o53_A Protein LRIM1, AGAP0063 99.7 6.6E-18 2.3E-22 180.2 4.3 247 247-584 32-278 (317)
68 1ozn_A Reticulon 4 receptor; N 99.7 4.1E-16 1.4E-20 163.8 17.2 166 229-418 13-184 (285)
69 3zyi_A Leucine-rich repeat-con 99.7 3.6E-16 1.2E-20 175.7 17.1 190 217-419 66-274 (452)
70 3zyj_A Leucine-rich repeat-con 99.7 5E-16 1.7E-20 173.9 16.6 191 216-419 54-263 (440)
71 2xwt_C Thyrotropin receptor; s 99.7 6E-16 2E-20 157.8 15.0 144 238-404 22-172 (239)
72 1h6u_A Internalin H; cell adhe 99.7 1.4E-15 4.9E-20 161.1 18.5 178 226-422 40-228 (308)
73 2z66_A Variable lymphocyte rec 99.7 6.2E-16 2.1E-20 164.2 15.0 171 225-419 50-231 (306)
74 2o6q_A Variable lymphocyte rec 99.7 2.1E-15 7E-20 156.8 18.2 174 224-420 34-214 (270)
75 1z7x_W Ribonuclease inhibitor; 99.6 6.9E-18 2.3E-22 190.8 -1.9 393 226-670 2-439 (461)
76 1p9a_G Platelet glycoprotein I 99.6 1.5E-15 5.1E-20 159.2 16.1 179 228-420 11-204 (290)
77 2z62_A TOLL-like receptor 4, v 99.6 1.2E-15 4.2E-20 159.2 15.1 115 225-339 26-147 (276)
78 2xwt_C Thyrotropin receptor; s 99.6 1.4E-15 4.8E-20 155.0 14.6 186 217-418 23-233 (239)
79 3oja_A Leucine-rich immune mol 99.6 7.5E-16 2.6E-20 174.0 11.8 81 250-334 35-115 (487)
80 2o6q_A Variable lymphocyte rec 99.6 7.4E-15 2.5E-19 152.6 17.9 154 225-401 59-218 (270)
81 3m19_A Variable lymphocyte rec 99.6 2.1E-14 7.1E-19 147.4 17.2 167 229-419 16-187 (251)
82 2z62_A TOLL-like receptor 4, v 99.6 2.3E-14 7.8E-19 149.6 16.9 152 230-404 10-165 (276)
83 1h6t_A Internalin B; cell adhe 99.6 2.6E-14 8.7E-19 150.0 17.3 168 225-422 44-211 (291)
84 1h6u_A Internalin H; cell adhe 99.6 3E-14 1E-18 150.8 17.6 170 219-406 55-235 (308)
85 4ay9_X Follicle-stimulating ho 99.6 2E-14 6.7E-19 155.5 16.4 105 230-335 12-121 (350)
86 3rfs_A Internalin B, repeat mo 99.6 4.5E-14 1.5E-18 146.8 17.1 171 225-420 39-214 (272)
87 3oja_A Leucine-rich immune mol 99.5 2.9E-14 9.8E-19 161.1 14.3 163 226-419 33-199 (487)
88 3m19_A Variable lymphocyte rec 99.5 9.4E-14 3.2E-18 142.5 16.4 164 216-403 25-194 (251)
89 1wwl_A Monocyte differentiatio 99.5 5.5E-14 1.9E-18 149.4 14.7 175 226-421 94-284 (312)
90 3rfs_A Internalin B, repeat mo 99.5 1.5E-13 5.3E-18 142.7 17.7 160 219-401 55-218 (272)
91 1p9a_G Platelet glycoprotein I 99.5 6.7E-14 2.3E-18 146.6 14.0 163 224-401 28-208 (290)
92 4ezg_A Putative uncharacterize 99.5 9.3E-14 3.2E-18 136.6 13.7 149 225-401 42-194 (197)
93 3e6j_A Variable lymphocyte rec 99.5 2.2E-13 7.4E-18 137.4 15.7 150 229-402 21-173 (229)
94 2v9t_B SLIT homolog 2 protein 99.5 2E-13 6.7E-18 136.7 14.1 147 230-400 14-164 (220)
95 4ay9_X Follicle-stimulating ho 99.5 4.6E-13 1.6E-17 144.7 18.0 200 603-854 53-255 (350)
96 1m9s_A Internalin B; cell inva 99.5 1.6E-13 5.6E-18 157.9 15.0 166 225-420 41-206 (605)
97 2v70_A SLIT-2, SLIT homolog 2 99.5 2.8E-13 9.7E-18 135.5 13.8 148 230-401 14-166 (220)
98 1h6t_A Internalin B; cell adhe 99.5 4.8E-13 1.6E-17 140.2 16.0 158 219-405 60-217 (291)
99 1xeu_A Internalin C; cellular 99.5 3.2E-13 1.1E-17 139.2 14.4 151 225-405 39-189 (263)
100 1wwl_A Monocyte differentiatio 99.5 1.5E-13 5.2E-18 146.0 11.3 83 248-330 94-185 (312)
101 2o6s_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 135.9 11.0 158 224-411 25-189 (208)
102 4glp_A Monocyte differentiatio 99.5 2.7E-13 9.2E-18 143.9 12.7 175 227-422 91-283 (310)
103 1xeu_A Internalin C; cellular 99.4 1.4E-13 4.9E-18 141.8 9.9 166 226-422 18-183 (263)
104 2ast_B S-phase kinase-associat 99.4 4.1E-14 1.4E-18 152.4 5.7 100 229-331 49-156 (336)
105 2o6s_A Variable lymphocyte rec 99.4 2.5E-12 8.4E-17 127.7 17.0 148 230-401 10-161 (208)
106 4ezg_A Putative uncharacterize 99.4 1.2E-12 4E-17 128.7 13.7 145 247-420 42-190 (197)
107 1m9s_A Internalin B; cell inva 99.4 4.6E-13 1.6E-17 154.1 12.3 185 232-471 26-210 (605)
108 3cvr_A Invasion plasmid antige 99.4 2.2E-12 7.5E-17 146.7 17.3 158 225-421 78-240 (571)
109 3e6j_A Variable lymphocyte rec 99.4 2.4E-12 8.3E-17 129.7 15.1 138 216-365 30-172 (229)
110 2ast_B S-phase kinase-associat 99.4 4E-13 1.4E-17 144.6 9.1 174 227-420 70-256 (336)
111 4glp_A Monocyte differentiatio 99.4 5.1E-13 1.8E-17 141.8 8.8 172 224-419 114-302 (310)
112 2v9t_B SLIT homolog 2 protein 99.4 2.4E-12 8.2E-17 128.8 11.8 137 217-365 23-165 (220)
113 2xot_A Amphoterin-induced prot 99.4 1.4E-12 4.7E-17 141.6 10.1 169 230-419 21-197 (361)
114 2ca6_A RAN GTPase-activating p 99.4 7.4E-14 2.5E-18 153.4 0.1 62 457-526 243-314 (386)
115 2ca6_A RAN GTPase-activating p 99.3 8.2E-14 2.8E-18 153.1 0.1 272 241-577 23-339 (386)
116 2xot_A Amphoterin-induced prot 99.3 5.5E-12 1.9E-16 136.8 14.0 165 216-401 29-202 (361)
117 2v70_A SLIT-2, SLIT homolog 2 99.3 4.7E-12 1.6E-16 126.6 11.7 131 224-365 29-166 (220)
118 2ell_A Acidic leucine-rich nuc 99.3 3.8E-12 1.3E-16 121.5 10.6 119 226-346 23-152 (168)
119 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.4E-17 120.5 8.4 119 226-346 16-145 (149)
120 2ell_A Acidic leucine-rich nuc 99.3 3.7E-12 1.3E-16 121.6 9.3 137 248-406 23-165 (168)
121 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.7E-16 120.3 11.5 124 230-365 11-139 (192)
122 3cvr_A Invasion plasmid antige 99.3 3.6E-11 1.2E-15 136.7 15.7 159 216-407 91-250 (571)
123 1a9n_A U2A', U2A'; complex (nu 99.3 6.9E-12 2.4E-16 120.7 8.4 119 226-346 18-145 (176)
124 2o6r_A Variable lymphocyte rec 99.3 5.3E-11 1.8E-15 114.6 14.2 106 230-336 10-118 (177)
125 2wfh_A SLIT homolog 2 protein 99.3 2.8E-11 9.5E-16 118.1 12.1 123 230-365 13-139 (193)
126 3goz_A Leucine-rich repeat-con 99.2 9.7E-13 3.3E-17 142.9 1.6 84 251-334 24-125 (362)
127 3goz_A Leucine-rich repeat-con 99.2 1.3E-12 4.4E-17 142.0 2.3 158 226-401 21-209 (362)
128 2r9u_A Variable lymphocyte rec 99.2 4.5E-11 1.5E-15 114.4 11.7 112 229-341 14-128 (174)
129 2je0_A Acidic leucine-rich nuc 99.2 1.7E-11 5.9E-16 114.3 7.3 84 249-334 17-104 (149)
130 4b8c_D Glucose-repressible alc 99.2 1.9E-11 6.3E-16 144.6 9.2 153 226-403 172-331 (727)
131 1w8a_A SLIT protein; signaling 99.2 4.6E-11 1.6E-15 116.6 10.4 124 252-401 11-139 (192)
132 2wfh_A SLIT homolog 2 protein 99.2 8.6E-11 2.9E-15 114.6 11.8 115 216-331 21-139 (193)
133 2o6r_A Variable lymphocyte rec 99.2 1.8E-10 6.1E-15 110.9 13.8 115 224-338 25-144 (177)
134 1a9n_A U2A', U2A'; complex (nu 99.2 1.1E-11 3.6E-16 119.4 4.8 132 245-399 15-151 (176)
135 3g39_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 111.5 11.5 108 229-337 11-121 (170)
136 1dce_A Protein (RAB geranylger 99.1 1.3E-10 4.5E-15 132.9 11.2 105 229-335 443-550 (567)
137 4b8c_D Glucose-repressible alc 99.1 6E-11 2E-15 140.2 8.5 95 247-342 222-317 (727)
138 1dce_A Protein (RAB geranylger 99.1 1.4E-10 4.8E-15 132.6 11.2 119 274-417 442-566 (567)
139 1ds9_A Outer arm dynein; leuci 99.1 3.1E-12 1.1E-16 125.8 -4.6 123 229-364 25-152 (198)
140 2r9u_A Variable lymphocyte rec 99.0 1.7E-09 5.9E-14 103.3 9.8 101 251-365 14-118 (174)
141 3g39_A Variable lymphocyte rec 98.9 1.9E-09 6.6E-14 102.6 9.7 102 250-365 10-115 (170)
142 1ds9_A Outer arm dynein; leuci 98.9 3.9E-11 1.3E-15 117.9 -4.4 108 225-334 46-156 (198)
143 2ifg_A High affinity nerve gro 98.7 3.3E-08 1.1E-12 106.4 10.3 102 230-332 11-117 (347)
144 3sb4_A Hypothetical leucine ri 98.7 1.8E-08 6E-13 107.6 7.8 156 248-417 100-327 (329)
145 3sb4_A Hypothetical leucine ri 98.6 1.2E-07 4.2E-12 101.0 11.9 211 263-521 83-327 (329)
146 2ifg_A High affinity nerve gro 98.5 1.4E-07 4.7E-12 101.5 9.3 101 252-365 11-116 (347)
147 4fdw_A Leucine rich hypothetic 98.4 5.4E-06 1.8E-10 90.3 16.2 222 250-524 136-379 (401)
148 3e4g_A ATP synthase subunit S, 98.4 1.9E-07 6.4E-12 87.3 3.9 91 708-809 61-154 (176)
149 4fdw_A Leucine rich hypothetic 98.4 5.3E-06 1.8E-10 90.3 15.9 260 514-854 112-379 (401)
150 3e4g_A ATP synthase subunit S, 98.3 1.1E-07 3.7E-12 88.9 1.5 95 731-836 60-154 (176)
151 3un9_A NLR family member X1; l 98.3 6.1E-08 2.1E-12 104.7 -0.5 158 225-401 70-252 (372)
152 4fs7_A Uncharacterized protein 98.3 3.1E-05 1.1E-09 84.5 20.1 97 247-346 69-190 (394)
153 4fs7_A Uncharacterized protein 98.3 1.6E-05 5.5E-10 86.8 17.1 66 260-327 58-126 (394)
154 3un9_A NLR family member X1; l 98.0 8.3E-07 2.8E-11 95.7 -0.2 128 227-365 101-252 (372)
155 2ra8_A Uncharacterized protein 97.8 3.6E-05 1.2E-09 82.1 8.7 137 603-768 171-317 (362)
156 2ra8_A Uncharacterized protein 97.7 4.4E-05 1.5E-09 81.5 7.3 138 267-419 166-315 (362)
157 4gt6_A Cell surface protein; l 97.6 0.0019 6.6E-08 70.1 18.3 31 251-282 66-96 (394)
158 3rw6_A Nuclear RNA export fact 97.5 5.9E-05 2E-09 76.1 5.2 63 270-332 167-234 (267)
159 3rw6_A Nuclear RNA export fact 97.5 4.8E-05 1.6E-09 76.8 4.2 77 247-324 168-257 (267)
160 4gt6_A Cell surface protein; l 97.5 0.0035 1.2E-07 68.1 19.0 97 229-328 66-170 (394)
161 1io0_A Tropomodulin; LRR prote 97.5 3.3E-05 1.1E-09 74.1 2.5 113 269-400 32-163 (185)
162 1io0_A Tropomodulin; LRR prote 97.3 5E-05 1.7E-09 72.8 1.1 103 228-330 37-163 (185)
163 4h09_A Hypothetical leucine ri 96.6 0.092 3.2E-06 56.3 19.2 71 699-775 254-325 (379)
164 2qen_A Walker-type ATPase; unk 96.5 0.036 1.2E-06 58.7 15.4 171 2-196 163-347 (350)
165 2fna_A Conserved hypothetical 96.5 0.021 7.1E-07 60.8 13.3 169 2-196 169-355 (357)
166 4h09_A Hypothetical leucine ri 96.3 0.1 3.4E-06 56.1 17.4 112 482-622 238-349 (379)
167 3rfe_A Platelet glycoprotein I 95.7 0.016 5.4E-07 51.3 6.3 52 231-283 12-65 (130)
168 1w5s_A Origin recognition comp 95.3 0.057 2E-06 58.7 10.5 156 5-181 181-371 (412)
169 3rfe_A Platelet glycoprotein I 95.2 0.033 1.1E-06 49.2 6.4 52 253-307 12-66 (130)
170 2qby_B CDC6 homolog 3, cell di 90.0 4.1 0.00014 43.2 14.8 155 3-180 164-338 (384)
171 1njg_A DNA polymerase III subu 88.4 0.66 2.3E-05 45.6 6.6 77 2-79 155-232 (250)
172 1pgv_A TMD-1, tropomodulin TMD 87.6 0.27 9.2E-06 46.5 2.8 62 270-331 38-111 (197)
173 1pgv_A TMD-1, tropomodulin TMD 87.0 0.28 9.6E-06 46.4 2.6 79 249-328 41-136 (197)
174 1hqc_A RUVB; extended AAA-ATPa 85.1 1.2 3.9E-05 46.3 6.4 75 4-79 139-215 (324)
175 2v1u_A Cell division control p 78.1 13 0.00045 39.1 11.9 155 3-180 167-350 (387)
176 2qby_A CDC6 homolog 1, cell di 76.7 8.2 0.00028 40.7 9.7 157 3-180 163-347 (386)
177 2chg_A Replication factor C sm 65.8 8.5 0.00029 36.6 6.2 73 2-77 131-206 (226)
178 1fnn_A CDC6P, cell division co 64.5 64 0.0022 33.6 13.4 158 3-181 159-351 (389)
179 1sxj_B Activator 1 37 kDa subu 48.4 21 0.00073 36.3 5.9 74 2-78 136-213 (323)
180 1v54_E Cytochrome C oxidase po 40.8 51 0.0018 26.9 5.4 62 35-96 25-91 (109)
181 1iqp_A RFCS; clamp loader, ext 34.5 59 0.002 32.9 6.7 77 2-79 139-216 (327)
182 2y69_E Cytochrome C oxidase su 29.6 60 0.0021 28.0 4.4 63 35-97 68-135 (152)
183 3bos_A Putative DNA replicatio 23.8 93 0.0032 29.5 5.6 48 24-74 167-216 (242)
184 1jr3_A DNA polymerase III subu 20.1 94 0.0032 32.1 5.0 71 3-76 149-222 (373)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-36 Score=366.16 Aligned_cols=470 Identities=15% Similarity=0.066 Sum_probs=252.8
Q ss_pred CCCcEEEeeCCCCCC----CCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CCCc--cccCCCCC
Q 048809 227 KDCTAISLNNSNINE----LPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-ALPS--SLGLLQNL 298 (878)
Q Consensus 227 ~~lr~l~l~~~~~~~----l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~--~i~~L~~L 298 (878)
..++.|+++++.+.. +++.+ .+++|+.++++.+.+..+|.. |+++++|++|+|++|.+. .+|. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 467888888877654 44444 678888888887766556665 588999999999999885 4677 88999999
Q ss_pred cEEEccCCCCCCc--cc-ccCcccCcEEEeeCCCcccchH-h---hcccccCccc----------ccc-cccCCcEEEcc
Q 048809 299 QTLSLDYCELGDM--AI-IGDLKKLVILALRGSDMKELVG-E---IGQLTQLRLL----------IAP-ILSRLEELYIG 360 (878)
Q Consensus 299 ~~L~L~~~~l~~l--~~-i~~L~~L~~L~l~~~~l~~lp~-~---i~~L~~L~~L----------ip~-~l~~L~~L~l~ 360 (878)
++|+|++|.+... .. ++++++|++|++++|.++..+. . ++++++|++| +|. .+++|+.|++.
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls 208 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECC
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECc
Confidence 9999999986532 33 3788999999999998876543 3 6788888888 121 77889999998
Q ss_pred CCCCCccccccccccccccCcccccCCCCCCEEEeecCCCC-CCCcchhcccCCceEEEEecccccccccchhhhhhhhh
Q 048809 361 ESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK-TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRL 439 (878)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 439 (878)
+|.+. .. +..++++++|++|++++|... .+|..+..+++|+.|+++.+........
T Consensus 209 ~n~l~------------~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---------- 265 (768)
T 3rgz_A 209 SNNFS------------TG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---------- 265 (768)
T ss_dssp SSCCC------------SC-CCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC----------
T ss_pred CCcCC------------CC-CcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc----------
Confidence 88765 11 223788889999999988865 4567777888888888864432111000
Q ss_pred hhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccce
Q 048809 440 MVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLES 519 (878)
Q Consensus 440 ~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~ 519 (878)
..+++|++|++.++.....+...+ ...+++|++|++.++.-...++. ....+++|+.
T Consensus 266 ---------------~~l~~L~~L~L~~n~l~~~ip~~~-~~~~~~L~~L~Ls~n~l~~~~p~-------~~~~l~~L~~ 322 (768)
T 3rgz_A 266 ---------------LPLKSLQYLSLAENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGAVPP-------FFGSCSLLES 322 (768)
T ss_dssp ---------------CCCTTCCEEECCSSEEEESCCCCS-CTTCTTCSEEECCSSEEEECCCG-------GGGGCTTCCE
T ss_pred ---------------cccCCCCEEECcCCccCCccCHHH-HhhcCcCCEEECcCCcCCCccch-------HHhcCCCccE
Confidence 024556666666554322222222 12235666666655431111110 3344556666
Q ss_pred eeccccccccceecCCCCccccCCccEEEeecCCCcc-cccchhhhhhcc-CccEEEEecCCcchhhhcccccccccCCC
Q 048809 520 LLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLK-NVFPLVIGRGLQ-QLQSIEVTGCQNLEVIFAAERGDESSNSN 597 (878)
Q Consensus 520 L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 597 (878)
|+++++.-...++.. .+..+++|+.|++.+| ++. .+|. .+..++ +|++|++++|.....++.....
T Consensus 323 L~L~~n~l~~~ip~~--~l~~l~~L~~L~Ls~n-~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~------- 390 (768)
T 3rgz_A 323 LALSSNNFSGELPMD--TLLKMRGLKVLDLSFN-EFSGELPE--SLTNLSASLLTLDLSSNNFSGPILPNLCQ------- 390 (768)
T ss_dssp EECCSSEEEEECCHH--HHTTCTTCCEEECCSS-EEEECCCT--THHHHTTTCSEEECCSSEEEEECCTTTTC-------
T ss_pred EECCCCcccCcCCHH--HHhcCCCCCEEeCcCC-ccCccccH--HHHhhhcCCcEEEccCCCcCCCcChhhhh-------
Confidence 666554321122110 1334555666666554 232 2222 223343 5555655554332222211110
Q ss_pred CccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEeccccccccee
Q 048809 598 TQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELF 676 (878)
Q Consensus 598 ~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~ 676 (878)
..+++|+.|++++|.....++. ....+++|++|++++|..-. +|..+ .. +++|+.|++++|.. ...+.
T Consensus 391 ---~~~~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~----l~~L~~L~L~~n~l-~~~~p 459 (768)
T 3rgz_A 391 ---NPKNTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLSGTIPSSL-GS----LSKLRDLKLWLNML-EGEIP 459 (768)
T ss_dssp ---STTCCCCEEECCSSEEEEECCG--GGGGCTTCCEEECCSSEEESCCCGGG-GG----CTTCCEEECCSSCC-CSCCC
T ss_pred ---cccCCccEEECCCCccccccCH--HHhcCCCCCEEECcCCcccCcccHHH-hc----CCCCCEEECCCCcc-cCcCC
Confidence 0134455555555432222222 23344555555555532111 33222 22 45555555555543 22222
Q ss_pred eeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhh
Q 048809 677 ETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKS 756 (878)
Q Consensus 677 ~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~ 756 (878)
.......+++.++++++.- ....+..+..+++|++|++++|.....+|..++.+++|+.|++++| .+....+ ..+..
T Consensus 460 ~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p-~~l~~ 536 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN-SFSGNIP-AELGD 536 (768)
T ss_dssp GGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEEECC-GGGGG
T ss_pred HHHcCCCCceEEEecCCcc-cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC-cccCcCC-HHHcC
Confidence 2222233444444444322 2222333444555555555555444444444455555555555553 3332222 22344
Q ss_pred hccceEEEEcccc
Q 048809 757 LVRLKQMKIFHCK 769 (878)
Q Consensus 757 l~~L~~L~i~~C~ 769 (878)
+++|+.|++++|+
T Consensus 537 l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 537 CRSLIWLDLNTNL 549 (768)
T ss_dssp CTTCCEEECCSSE
T ss_pred CCCCCEEECCCCc
Confidence 5555555555443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-36 Score=361.74 Aligned_cols=123 Identities=9% Similarity=0.007 Sum_probs=70.8
Q ss_pred ccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCccc
Q 048809 728 STSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESL 807 (878)
Q Consensus 728 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 807 (878)
+..+++|+.|++++ ++++...| ..++++++|+.|+++++.--..+|.. ...+++|+.|+++++.--
T Consensus 628 ~~~l~~L~~LdLs~-N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~------------l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 628 FDNNGSMMFLDMSY-NMLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDE------------VGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CSSSBCCCEEECCS-SCCBSCCC-GGGGGCTTCCEEECCSSCCCSCCCGG------------GGGCTTCCEEECCSSCCE
T ss_pred hhccccccEEECcC-CcccccCC-HHHhccccCCEEeCcCCccCCCCChH------------HhCCCCCCEEECCCCccc
Confidence 34457788888887 45655434 33467888888888876533355542 335788888888887544
Q ss_pred ceeeccccceeEcCCcceEEEcCCCCcccccCCCccCCCcceeeccc-----------c--CccccccccCChh
Q 048809 808 TSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQ-----------W--DDEKRWAWKDDLN 868 (878)
Q Consensus 808 ~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~i~~-----------c--~~~~~w~~~~~~~ 868 (878)
..+|.. +..+++|++|++++|+--..+|.+++ ..++....+.+ | ..+.+|+...+.+
T Consensus 694 g~ip~~---l~~l~~L~~L~ls~N~l~g~iP~~~~-~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~ 763 (768)
T 3rgz_A 694 GRIPQA---MSALTMLTEIDLSNNNLSGPIPEMGQ-FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSH 763 (768)
T ss_dssp ECCCGG---GGGCCCCSEEECCSSEEEEECCSSSS-GGGSCGGGGCSCTEEESTTSCCCCSCC-----------
T ss_pred CcCChH---HhCCCCCCEEECcCCcccccCCCchh-hccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcc
Confidence 467766 66788888888888876666776543 33333333322 3 4566777665543
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-34 Score=340.91 Aligned_cols=130 Identities=23% Similarity=0.301 Sum_probs=110.8
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-Cccc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSL 292 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i 292 (878)
.....|. .+++++++|++++|.++.++.. + ++++|++|++++|.+..++...|.++++||+|+|++|.++.+ |..|
T Consensus 22 ~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 22 KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp CCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred CcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 3444443 4678899999999999988763 3 899999999999999988877789999999999999999877 7889
Q ss_pred cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcc--cchHhhcccccCccc
Q 048809 293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMK--ELVGEIGQLTQLRLL 346 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L 346 (878)
+++++|++|++++|.++.+ ..++++++|++|++++|.+. .+|..++++++|++|
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 9999999999999998765 67999999999999999887 478888888776666
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-33 Score=336.52 Aligned_cols=556 Identities=15% Similarity=0.120 Sum_probs=350.3
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SL 292 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i 292 (878)
.....|. .++.++++|++++|.++.++.. + .+++|++|++++|.+..++.+.|.++++|++|+|++|.+..+|. .|
T Consensus 15 ~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 15 KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp CCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred Ccccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence 3344443 4568899999999999998864 3 78999999999999888887788999999999999999999986 59
Q ss_pred cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCccc---------ccc------cccCC
Q 048809 293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLL---------IAP------ILSRL 354 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L---------ip~------~l~~L 354 (878)
+++++|++|++++|.++.+ ..++++++|++|++++|.++..+ ..++++++|++| ++. .+++|
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 9999999999999998865 57999999999999999887754 457778877777 111 23567
Q ss_pred cEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchh------cccCCceEEEEecccccccc
Q 048809 355 EELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLS------FFKMLQRYRILIGSQWTWDY 428 (878)
Q Consensus 355 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~------~l~~L~~L~l~~~~~~~~~~ 428 (878)
+.|++.+|.+. ...+..+..+.+|+.|++.++... +.... ...+|+.|++..+......
T Consensus 174 ~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~- 238 (680)
T 1ziw_A 174 KKLELSSNQIK------------EFSPGCFHAIGRLFGLFLNNVQLG--PSLTEKLCLELANTSIRNLSLSNSQLSTTS- 238 (680)
T ss_dssp SEEECTTCCCC------------CBCTTGGGGSSEECEEECTTCCCH--HHHHHHHHHHHTTSCCCEEECTTSCCCEEC-
T ss_pred cEEECCCCccc------------ccChhhhhhhhhhhhhhccccccC--hhhHHHHHHHhhhccccEEEccCCcccccC-
Confidence 77777766554 122334445555555555544321 00000 1245666665322111000
Q ss_pred cchhhhhhhhhhhccCCccccchhHHhhc--cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccc
Q 048809 429 ISSEISEIFRLMVASGANICLNGGHIMQL--KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDR 506 (878)
Q Consensus 429 ~~~~~~~~l~~~l~l~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 506 (878)
......+ ++|+.|+++++.........+ ..+++|++|++.++. +..+...
T Consensus 239 ----------------------~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~--- 290 (680)
T 1ziw_A 239 ----------------------NTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNN-IQHLFSH--- 290 (680)
T ss_dssp ----------------------TTTTGGGGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCC-BSEECTT---
T ss_pred ----------------------hhHhhccCcCCCCEEECCCCCcCccCcccc--cCcccccEeeCCCCc-cCccChh---
Confidence 0001112 348888887765432211222 457788888887764 3333211
Q ss_pred cccccCcccccceeecccccccc-----ceec-CCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCc
Q 048809 507 ATALTTAFPVLESLLLRHLSNLE-----KICR-GPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQN 580 (878)
Q Consensus 507 ~~~~~~~~~~L~~L~L~~~~~L~-----~~~~-~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 580 (878)
....+++|+.|++.++..-. .++. ....+..+++|+.|++.++ .+..+++. .+.++++|++|++++|..
T Consensus 291 ---~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 291 ---SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN-MFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ---TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT-TTTTCTTCCEEECTTCBS
T ss_pred ---hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChh-HhccccCCcEEECCCCch
Confidence 44567788888887532111 1100 1113456788888888875 55555442 456778888888887642
Q ss_pred -chhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-cccccccccccccc
Q 048809 581 -LEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFH 658 (878)
Q Consensus 581 -l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~ 658 (878)
+..++..... ....++|+.|+++++. ++.+... ....+++|+.|++++|.... +|...+.+ ++
T Consensus 366 ~~~~l~~~~f~---------~~~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----l~ 430 (680)
T 1ziw_A 366 SLRTLTNETFV---------SLAHSPLHILNLTKNK-ISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRG----LE 430 (680)
T ss_dssp CCCEECTTTTG---------GGTTSCCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTT----CT
T ss_pred hhhhcchhhhc---------ccccCcCceEECCCCC-CCeEChh-hhhCCCCCCEEeCCCCcCccccCcccccC----cc
Confidence 2222211100 0013577788887764 4444331 34467778888888755433 66555555 77
Q ss_pred ceeEEEEecccccccceeeeccccccceeeccCCCCch-hhhccccccccCCccEEEEccCCCcccccC-cccccCCCcE
Q 048809 659 TIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDL-KQILKQESSHANNLEVLEIYGCDNLINLVP-SSTSFQNLTT 736 (878)
Q Consensus 659 ~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l-~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~ 736 (878)
+|++|++++|.. ...........+.++.++++.+.-- ....+..+..+++|+.|++++|. ++.+++ .+..+++|+.
T Consensus 431 ~L~~L~Ls~n~l-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 431 NIFEIYLSYNKY-LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEI 508 (680)
T ss_dssp TCCEEECCSCSE-EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cccEEecCCCCc-ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCE
Confidence 888888887764 1111111122345666666554310 01224456778888999988876 444544 3677888999
Q ss_pred EEecccCCceEeech-------hhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccce
Q 048809 737 VAVDFCYGMINILTS-------STAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTS 809 (878)
Q Consensus 737 L~i~~c~~l~~l~~~-------~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 809 (878)
|++++ +.++.+... ..+.++++|+.|+++++ .++.++.. ....+++|+.|+++++ +++.
T Consensus 509 L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~-----------~~~~l~~L~~L~Ls~N-~l~~ 574 (680)
T 1ziw_A 509 LDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVE-----------VFKDLFELKIIDLGLN-NLNT 574 (680)
T ss_dssp EECCS-SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTT-----------TTTTCTTCCEEECCSS-CCCC
T ss_pred EeCCC-CCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHH-----------HcccccCcceeECCCC-CCCc
Confidence 98887 456554211 23577888999999875 46666642 1234788899999764 6888
Q ss_pred eeccccceeEcCCcceEEEcCCCCcccccCCCc--cCCCcceeeccc
Q 048809 810 FCSVNNCAFKFPSLERLVVEDCPNMSIFSGGEL--STPNLRKVQLKQ 854 (878)
Q Consensus 810 l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~--~~~~L~~l~i~~ 854 (878)
+|.. ....+++|+.|++++| .++.+|.... .+++|+.+++++
T Consensus 575 l~~~--~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 575 LPAS--VFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CCTT--TTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CCHh--HhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence 8765 2346788999999888 6777765432 468899999877
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.6e-33 Score=331.04 Aligned_cols=552 Identities=16% Similarity=0.156 Sum_probs=376.4
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l 308 (878)
+.++.+++.++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.+..+ |..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 578889999999997664 7999999999999999988889999999999999999876 67789999999999999999
Q ss_pred CCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCccc----------ccc---cccCCcEEEccCCCCCccccccc
Q 048809 309 GDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLL----------IAP---ILSRLEELYIGESPIEWGKVEGV 372 (878)
Q Consensus 309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L----------ip~---~l~~L~~L~l~~~~~~~~~~~~~ 372 (878)
+.+ ..++++++|++|++++|.++.+| ..++++++|++| .|. ++++|+.|++.+|.+.
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------- 158 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ------- 158 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-------
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-------
Confidence 876 36999999999999999998887 458888777766 111 4455555555555443
Q ss_pred cccccccCcccc--cCCCCCCEEEeecCCCCCCC-cchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCcccc
Q 048809 373 DGERRNASLHEL--NNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICL 449 (878)
Q Consensus 373 ~~~~~~~~~~~L--~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~ 449 (878)
......+ ..+++|+.|++++|....++ ..+..+.+|+.+.+..... . .. .
T Consensus 159 -----~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l------~----~~------------~ 211 (680)
T 1ziw_A 159 -----ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL------G----PS------------L 211 (680)
T ss_dssp -----CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC------H----HH------------H
T ss_pred -----ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc------C----hh------------h
Confidence 0111111 13345555665555544332 2333444444444321000 0 00 0
Q ss_pred chhHH--hhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeecccccc
Q 048809 450 NGGHI--MQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSN 527 (878)
Q Consensus 450 ~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 527 (878)
...+. ...++|++|+++++.........+..-..++|++|+++++. +..++.. ....+++|+.|+++++ .
T Consensus 212 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~n-~ 283 (680)
T 1ziw_A 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGND------SFAWLPQLEYFFLEYN-N 283 (680)
T ss_dssp HHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTT------TTTTCTTCCEEECCSC-C
T ss_pred HHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcc------cccCcccccEeeCCCC-c
Confidence 00000 02378999999887643332222221112469999999874 4443221 4567899999999985 4
Q ss_pred ccceecCCCCccccCCccEEEeecCCC--------cccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCc
Q 048809 528 LEKICRGPLAAESFCKVKDIRVEWCDK--------LKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQ 599 (878)
Q Consensus 528 L~~~~~~~~~~~~l~~L~~L~l~~c~~--------L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 599 (878)
+.... +..+..+++|+.|++.++.. +..+... .+..+++|++|+++++......+...
T Consensus 284 l~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~----------- 349 (680)
T 1ziw_A 284 IQHLF--SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF-SFQWLKCLEHLNMEDNDIPGIKSNMF----------- 349 (680)
T ss_dssp BSEEC--TTTTTTCTTCCEEECTTCBCCC------CCEECTT-TTTTCTTCCEEECCSCCBCCCCTTTT-----------
T ss_pred cCccC--hhhhcCCCCccEEeccchhhhcccccccccccChh-hcccCCCCCEEECCCCccCCCChhHh-----------
Confidence 44432 22456789999999987531 1122111 34678999999999975433222222
Q ss_pred cccccccceeecccCC-CcceecCCCcc-cccCCcceEEEecCCCccccccccccccccccceeEEEEeccccccccee-
Q 048809 600 VIELTQLTTLELCSLP-QLTSFCTGDLH-FEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELF- 676 (878)
Q Consensus 600 ~~~~~~L~~L~L~~c~-~l~~~~~~~~~-~~~~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~- 676 (878)
..+++|+.|+++++. .+..++..... ...++|+.|++++|..-.++...+.. +++|+.|++++|.. ...+.
T Consensus 350 -~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~N~l-~~~~~~ 423 (680)
T 1ziw_A 350 -TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW----LGHLEVLDLGLNEI-GQELTG 423 (680)
T ss_dssp -TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT----CTTCCEEECCSSCC-EEECCS
T ss_pred -ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC----CCCCCEEeCCCCcC-ccccCc
Confidence 348999999999875 24444432111 12368999999996543455555566 99999999999985 22221
Q ss_pred eeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCC--cccccCcccccCCCcEEEecccCCceEeechhhh
Q 048809 677 ETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDN--LINLVPSSTSFQNLTTVAVDFCYGMINILTSSTA 754 (878)
Q Consensus 677 ~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~--l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 754 (878)
.......+++.++++.+. +..+....+..+++|+.|++++|.. +...|..+..+++|+.|++++ ++++.++ +..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~-N~l~~i~-~~~~ 500 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN-NNIANIN-DDML 500 (680)
T ss_dssp GGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS-SCCCCCC-TTTT
T ss_pred ccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC-CCCCcCC-hhhh
Confidence 122344678888888876 5566677788899999999998764 356677788999999999998 5787764 4556
Q ss_pred hhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCc
Q 048809 755 KSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNM 834 (878)
Q Consensus 755 ~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L 834 (878)
.++++|+.|+++++ .++.++......+. ......+++|+.|+++++ .++.+|.. ....+++|++|+++++ ++
T Consensus 501 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~---~~~~~~l~~L~~L~L~~N-~l~~i~~~--~~~~l~~L~~L~Ls~N-~l 572 (680)
T 1ziw_A 501 EGLEKLEILDLQHN-NLARLWKHANPGGP---IYFLKGLSHLHILNLESN-GFDEIPVE--VFKDLFELKIIDLGLN-NL 572 (680)
T ss_dssp TTCTTCCEEECCSS-CCGGGGSTTSTTSC---CCTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSS-CC
T ss_pred ccccccCEEeCCCC-CccccchhhccCCc---chhhcCCCCCCEEECCCC-CCCCCCHH--HcccccCcceeECCCC-CC
Confidence 78999999999985 46666432100000 012345899999999986 68888864 2457899999999876 78
Q ss_pred ccccCCC-ccCCCcceeecccc
Q 048809 835 SIFSGGE-LSTPNLRKVQLKQW 855 (878)
Q Consensus 835 ~~lp~~~-~~~~~L~~l~i~~c 855 (878)
+.+|.+. ..+++|+.|+++++
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCHhHhCCCCCCCEEECCCC
Confidence 8898764 56899999999975
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-33 Score=331.41 Aligned_cols=510 Identities=15% Similarity=0.131 Sum_probs=309.7
Q ss_pred cccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcE
Q 048809 224 DVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQT 300 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~ 300 (878)
.+++.+++|++++|.++.+++ .+ .+++|++|++++|.+..++...|.++++|++|+|++|.+..+ |..|+.+++|++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 355667777777777776643 33 677777777777777666555567777777777777777654 566777777777
Q ss_pred EEccCCCCCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809 301 LSLDYCELGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR 377 (878)
Q Consensus 301 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 377 (878)
|++++|.++.+ ..++++++|++|++++|.+..++ ..+. .+++|+.|++.+|.+.
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----------~l~~L~~L~L~~n~l~------------ 166 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-----------PTEKLKVLDFQNNAIH------------ 166 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-----------CCTTCCEEECCSSCCC------------
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCccccc-----------CCcccCEEEcccCccc------------
Confidence 77777777654 56777777777777777666542 1122 2345667777777665
Q ss_pred ccCcccccCCCCCC--EEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHh
Q 048809 378 NASLHELNNLSKLT--SLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIM 455 (878)
Q Consensus 378 ~~~~~~L~~l~~L~--~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~ 455 (878)
......++.+++|+ .|++++|....++.......+|+.|++..+.. +.. ...
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~---------~~~-----------------~~~ 220 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN---------LLV-----------------IFK 220 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC---------HHH-----------------HHH
T ss_pred ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh---------HHH-----------------Hhh
Confidence 23345667777777 77777777766655544555666666532110 000 011
Q ss_pred hcc--ccceEEecCcCCcccc-cccCcCCCC--CCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccc
Q 048809 456 QLK--GIKDLCLGGSLDMKSV-LYGSDGEGF--PQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEK 530 (878)
Q Consensus 456 ~l~--~L~~L~l~~~~~~~~~-~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 530 (878)
.+. .++.+.+..+...... ...-....+ .+|++|++.++. +..++.. ....+++|+.|+++++ .++.
T Consensus 221 ~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~------~~~~l~~L~~L~l~~n-~l~~ 292 (606)
T 3t6q_A 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSN------TFHCFSGLQELDLTAT-HLSE 292 (606)
T ss_dssp HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTT------TTTTCTTCSEEECTTS-CCSC
T ss_pred hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHH------HhccccCCCEEeccCC-ccCC
Confidence 122 2233333333222110 000000111 267888887763 3333211 3566888999999885 4555
Q ss_pred eecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceee
Q 048809 531 ICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLE 610 (878)
Q Consensus 531 ~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 610 (878)
++ ..+..+++|+.|++.+| .+..+++. .+.++++|++|++++|.....++... +..+++|+.|+
T Consensus 293 lp---~~l~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~-----------~~~l~~L~~L~ 356 (606)
T 3t6q_A 293 LP---SGLVGLSTLKKLVLSAN-KFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGC-----------LENLENLRELD 356 (606)
T ss_dssp CC---SSCCSCTTCCEEECTTC-CCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSST-----------TTTCTTCCEEE
T ss_pred CC---hhhcccccCCEEECccC-CcCcCchh-hhhccCcCCEEECCCCCcccccchhh-----------hhccCcCCEEE
Confidence 53 23567888999999886 55555442 45788899999998876544444321 22488899999
Q ss_pred cccCCCcceec-CCCcccccCCcceEEEecCCCccccccccccccccccceeEEEEecccccccceeeeccccccceeec
Q 048809 611 LCSLPQLTSFC-TGDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKG 689 (878)
Q Consensus 611 L~~c~~l~~~~-~~~~~~~~~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~ 689 (878)
++++. ++... .......+++|++|++++|....++...+.. +++|+.|++++|... .
T Consensus 357 l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~n~l~-~---------------- 414 (606)
T 3t6q_A 357 LSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE----CPQLELLDLAFTRLK-V---------------- 414 (606)
T ss_dssp CCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT----CTTCSEEECTTCCEE-C----------------
T ss_pred CCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC----CccCCeEECCCCcCC-C----------------
Confidence 98864 44432 1123557888999999886433354445555 888999999888740 0
Q ss_pred cCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceE--eechhhhhhhccceEEEEcc
Q 048809 690 INFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMIN--ILTSSTAKSLVRLKQMKIFH 767 (878)
Q Consensus 690 l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~--l~~~~~~~~l~~L~~L~i~~ 767 (878)
..+...+..+++|++|++++|......+..+..+++|++|++++|. ++. ++....+..+++|+.|++++
T Consensus 415 --------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 415 --------KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp --------CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTT
T ss_pred --------cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCC
Confidence 0112234556778888887776544445556677788888887753 332 22224566777888888877
Q ss_pred ccccccccccccccccccccccccccccchhhccccCccccee-eccccceeEcCCcceEEEcCCCCcccccCCCccCCC
Q 048809 768 CKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSF-CSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPN 846 (878)
Q Consensus 768 C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~~ 846 (878)
|. ++.++.. ....+++|+.|+++++. ++.. |.. +..+++| +|++++|.--...|.....+++
T Consensus 486 n~-l~~~~~~-----------~~~~l~~L~~L~Ls~N~-l~~~~~~~---l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 486 CD-LSSIDQH-----------AFTSLKMMNHVDLSHNR-LTSSSIEA---LSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp SC-CCEECTT-----------TTTTCTTCCEEECCSSC-CCGGGGGG---GTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred Cc-cCccChh-----------hhccccCCCEEECCCCc-cCcCChhH---hCccccc-EEECcCCcccccCHhhcccCCC
Confidence 64 4444321 22346778888887764 4433 333 4566777 7787777433333333345677
Q ss_pred cceeeccc
Q 048809 847 LRKVQLKQ 854 (878)
Q Consensus 847 L~~l~i~~ 854 (878)
|+++++++
T Consensus 549 L~~L~l~~ 556 (606)
T 3t6q_A 549 QRTINLRQ 556 (606)
T ss_dssp SSEEECTT
T ss_pred CCEEeCCC
Confidence 78888876
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-32 Score=323.55 Aligned_cols=492 Identities=16% Similarity=0.137 Sum_probs=344.4
Q ss_pred ccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEE
Q 048809 225 VLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTL 301 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L 301 (878)
...++++|++++|.+..+.+ .+ .+++|++|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 46789999999999988744 34 899999999999998888777789999999999999999987 6889999999999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809 302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN 378 (878)
Q Consensus 302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (878)
++++|.++.+ +.+..+++|++|++++|.++.+ |..++.+.+|+.+ .|++.+|.+..
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l---------~L~l~~n~l~~------------ 193 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL---------SLNLNGNDIAG------------ 193 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE---------EEECTTCCCCE------------
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee---------EEecCCCccCc------------
Confidence 9999998864 6677799999999999999887 4557877655532 57888776651
Q ss_pred cCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhc-
Q 048809 379 ASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQL- 457 (878)
Q Consensus 379 ~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l- 457 (878)
. ........+|+.|+++++. .++..+..+.++....+.......... ..+.+.....+
T Consensus 194 ~-~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~------------------~~i~~~~~~~l~ 252 (606)
T 3t6q_A 194 I-EPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDD------------------EDISPAVFEGLC 252 (606)
T ss_dssp E-CTTTTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCC------------------CCCCGGGGGGGG
T ss_pred c-ChhHhhhccccccccCCch--hHHHHhhhccccchhheechhhccccc------------------cccChhHhchhh
Confidence 1 1222233578889888775 344444455555554443222111100 00111111112
Q ss_pred -cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCC
Q 048809 458 -KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPL 536 (878)
Q Consensus 458 -~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~ 536 (878)
.+++.|++.++... .+.+.. ...+++|++|++.++. +..++. ....+++|+.|+++++. ++.+. +.
T Consensus 253 ~~~L~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~l~~n~-l~~lp~-------~l~~l~~L~~L~l~~n~-l~~~~--~~ 319 (606)
T 3t6q_A 253 EMSVESINLQKHYFF-NISSNT-FHCFSGLQELDLTATH-LSELPS-------GLVGLSTLKKLVLSANK-FENLC--QI 319 (606)
T ss_dssp GSEEEEEECTTCCCS-SCCTTT-TTTCTTCSEEECTTSC-CSCCCS-------SCCSCTTCCEEECTTCC-CSBGG--GG
T ss_pred cCceeEEEeecCccC-ccCHHH-hccccCCCEEeccCCc-cCCCCh-------hhcccccCCEEECccCC-cCcCc--hh
Confidence 27888999877543 322221 2468999999999874 444432 45678999999999863 44332 22
Q ss_pred CccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhh--hcccccccccCCCCccccccccceeecccC
Q 048809 537 AAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVI--FAAERGDESSNSNTQVIELTQLTTLELCSL 614 (878)
Q Consensus 537 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c 614 (878)
.+..+++|+.|++.+|.....++. ..+..+++|++|+++++...... +.. +..+++|+.|+++++
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQ------------LRNLSHLQSLNLSYN 386 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEESTTT------------TTTCTTCCEEECCSC
T ss_pred hhhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCccccccCcchh------------cccCCCCCEEECCCC
Confidence 457789999999999755445544 24578999999999997543222 222 234899999999997
Q ss_pred CCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCC
Q 048809 615 PQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFH 693 (878)
Q Consensus 615 ~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~ 693 (878)
. +..++.. ....+++|++|++++|..-. .|...+.. +++|+.|++++|..
T Consensus 387 ~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~l~~n~l----------------------- 437 (606)
T 3t6q_A 387 E-PLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQN----LHLLKVLNLSHSLL----------------------- 437 (606)
T ss_dssp S-CEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTT----CTTCCEEECTTCCC-----------------------
T ss_pred c-CCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhC----cccCCEEECCCCcc-----------------------
Confidence 4 4444332 34578999999999965444 55555666 99999999999974
Q ss_pred CchhhhccccccccCCccEEEEccCCCcccc---cCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccc
Q 048809 694 PDLKQILKQESSHANNLEVLEIYGCDNLINL---VPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKM 770 (878)
Q Consensus 694 ~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l---~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~ 770 (878)
....+..+..+++|++|++++|...... +..+..+++|+.|++++| .++.+++ ..+..+++|++|++++|.
T Consensus 438 ---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~- 511 (606)
T 3t6q_A 438 ---DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNR- 511 (606)
T ss_dssp ---BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-
T ss_pred ---CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCCCc-
Confidence 1222345566789999999998754321 234678899999999985 6777644 455788999999999864
Q ss_pred cccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCc
Q 048809 771 ITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNM 834 (878)
Q Consensus 771 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L 834 (878)
++.++.. ....+++| .|+++++. ++.++.. .+..+++|++|++++||-.
T Consensus 512 l~~~~~~-----------~l~~l~~L-~L~L~~N~-l~~~~~~--~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 512 LTSSSIE-----------ALSHLKGI-YLNLASNH-ISIILPS--LLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CCGGGGG-----------GGTTCCSC-EEECCSSC-CCCCCGG--GHHHHHTSSEEECTTCCEE
T ss_pred cCcCChh-----------HhCccccc-EEECcCCc-ccccCHh--hcccCCCCCEEeCCCCCcc
Confidence 5544321 22347788 88888874 6665543 2456889999999998743
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-32 Score=321.07 Aligned_cols=488 Identities=14% Similarity=0.112 Sum_probs=319.8
Q ss_pred ccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEE
Q 048809 225 VLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTL 301 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L 301 (878)
...++++|++++|.++.+++. + .+++||+|++++|.+..++.+.|+++++|++|++++|.+..+| ..++++++|++|
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 467899999999999987553 3 8999999999999999986666899999999999999998886 789999999999
Q ss_pred EccCCCCCC---cccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809 302 SLDYCELGD---MAIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR 377 (878)
Q Consensus 302 ~L~~~~l~~---l~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 377 (878)
++++|.++. +..++++++|++|++++|.++.++ ..++.+.+|+.. +..|++.+|.+..
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~-------l~~L~l~~n~l~~----------- 195 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV-------NLSLDMSLNPIDF----------- 195 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC-------CCEEECTTCCCCE-----------
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc-------cceeeccCCCcce-----------
Confidence 999999874 478999999999999999988875 457777766542 5678888887651
Q ss_pred ccCcccccCCCCCCEEEeecCCCC--CCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHh
Q 048809 378 NASLHELNNLSKLTSLEILIQDEK--TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIM 455 (878)
Q Consensus 378 ~~~~~~L~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~ 455 (878)
.........+|+.|+++++... ..|.++..+++|+.+.+..+......... ........
T Consensus 196 --~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~-----------------~~~~~~~~ 256 (606)
T 3vq2_A 196 --IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE-----------------IFEPSIME 256 (606)
T ss_dssp --ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS-----------------CCCGGGGT
T ss_pred --eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc-----------------ccChHHhh
Confidence 1122223337999999988753 45666778888888877643321110000 00000000
Q ss_pred hc--cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceec
Q 048809 456 QL--KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICR 533 (878)
Q Consensus 456 ~l--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~ 533 (878)
.+ -.++.+.+..........+.+ ..+++|++|++.++. +..++ ....+++|+.|++.+|.- +.++
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~--------~l~~~~~L~~L~l~~n~l-~~lp- 323 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLE--------DVPKHFKWQSLSIIRCQL-KQFP- 323 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCC--------CCCTTCCCSEEEEESCCC-SSCC-
T ss_pred hhhhccHhheecccccccccccccc--ccCCCCCEEEecCcc-chhhh--------hccccccCCEEEcccccC-cccc-
Confidence 11 135566665555544444443 457888888887764 23322 344566777777777643 4442
Q ss_pred CCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhh---hcccccccccCCCCccccccccceee
Q 048809 534 GPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVI---FAAERGDESSNSNTQVIELTQLTTLE 610 (878)
Q Consensus 534 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~L~ 610 (878)
.. .+++|+.|++.+|..+...+ +..+++|++|++++|.. ... +... ..+++|+.|+
T Consensus 324 ---~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l-~~~~~~~~~~------------~~~~~L~~L~ 382 (606)
T 3vq2_A 324 ---TL-DLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNAL-SFSGCCSYSD------------LGTNSLRHLD 382 (606)
T ss_dssp ---CC-CCSSCCEEEEESCSSCEECC----CCCCTTCCEEECCSSCE-EEEEECCHHH------------HCCSCCCEEE
T ss_pred ---cC-CCCccceeeccCCcCccchh----hccCCCCCEEECcCCcc-CCCcchhhhh------------ccCCcccEeE
Confidence 22 67777777777775555442 24677777777777642 222 2111 2367777777
Q ss_pred cccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeec
Q 048809 611 LCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKG 689 (878)
Q Consensus 611 L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~ 689 (878)
+++|. ++.++. ....+++|++|++++|.... .|...+.. +++|+.|++++|..
T Consensus 383 L~~n~-l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~l~~n~l------------------- 436 (606)
T 3vq2_A 383 LSFNG-AIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLS----LEKLLYLDISYTNT------------------- 436 (606)
T ss_dssp CCSCS-EEEECC--CCTTCTTCCEEECTTSEEESTTTTTTTTT----CTTCCEEECTTSCC-------------------
T ss_pred CCCCc-cccchh--hccCCCCCCeeECCCCccCCccChhhhhc----cccCCEEECcCCCC-------------------
Confidence 77754 555552 34467777777777754333 33344444 77777777777764
Q ss_pred cCCCCchhhhccccccccCCccEEEEccCCCccc-ccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccc
Q 048809 690 INFHPDLKQILKQESSHANNLEVLEIYGCDNLIN-LVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHC 768 (878)
Q Consensus 690 l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C 768 (878)
....+..+..+++|++|++++|..... +|..+..+++|++|++++| .++..++ ..+.++++|++|++++|
T Consensus 437 -------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 437 -------KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp -------EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS
T ss_pred -------CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCC
Confidence 111223445567788888877764442 4556677788888888774 5666533 34466778888888776
Q ss_pred cccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcC-CcceEEEcCCCCc
Q 048809 769 KMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFP-SLERLVVEDCPNM 834 (878)
Q Consensus 769 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~-sL~~L~i~~C~~L 834 (878)
. ++.++.. ....+++|+.|+++++. ++.+|.. +..++ +|++|+++++|-.
T Consensus 508 ~-l~~~~~~-----------~~~~l~~L~~L~l~~N~-l~~~p~~---~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 508 N-LLFLDSS-----------HYNQLYSLSTLDCSFNR-IETSKGI---LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp C-CSCEEGG-----------GTTTCTTCCEEECTTSC-CCCEESC---GGGSCTTCCEEECCSCCCC
T ss_pred c-CCCcCHH-----------HccCCCcCCEEECCCCc-CcccCHh---HhhhcccCcEEEccCCCcc
Confidence 4 4444221 22346778888887764 7777765 55665 5888888776543
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=300.39 Aligned_cols=180 Identities=20% Similarity=0.248 Sum_probs=136.9
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSL 292 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i 292 (878)
.....|. .++.++++|++++|.++.++.. + .+++|++|++++|.+..++.+.|.++++|++|+|++|.+..+| ..|
T Consensus 18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 3444443 4577899999999999887653 3 8999999999999988888888899999999999999998775 678
Q ss_pred cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCccc--chHhhcccccCcccccccccCCcEEEccCCCCCccc
Q 048809 293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGK 368 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~ 368 (878)
+.+++|++|++++|.++.+ ..++++++|++|++++|.++. +|..++++++ |+.|++.+|.+.
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~-----------L~~L~l~~n~l~--- 162 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-----------LEHLDLSSNKIQ--- 162 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-----------CCEEECTTSCCC---
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC-----------CCEEeCcCCccc---
Confidence 9999999999999998876 359999999999999998875 6888886664 455577777654
Q ss_pred cccccccccccCcccccCCCCC----CEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809 369 VEGVDGERRNASLHELNNLSKL----TSLEILIQDEKTLPRDLSFFKMLQRYRIL 419 (878)
Q Consensus 369 ~~~~~~~~~~~~~~~L~~l~~L----~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 419 (878)
......++.+++| +.|+++++....++.......+|+.|++.
T Consensus 163 ---------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 208 (570)
T 2z63_A 163 ---------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208 (570)
T ss_dssp ---------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred ---------eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence 1223344445555 67888888776665443333356776665
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=307.41 Aligned_cols=500 Identities=16% Similarity=0.140 Sum_probs=307.5
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecC-CCCCCCchhhcCCCCCcEEEeeCCCCCCC-Ccc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHND-HSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSS 291 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~-~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~ 291 (878)
.....|. .+.++++|++++|.++.+++ .+ .+++|++|++++| ....++...|.++++|++|+|++|.+..+ |..
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 4555565 78899999999999988744 33 8999999999999 66778666789999999999999999876 889
Q ss_pred ccCCCCCcEEEccCCCCCC--ccc--ccCcccCcEEEeeCCCcccch--HhhcccccCccc----------ccc---cc-
Q 048809 292 LGLLQNLQTLSLDYCELGD--MAI--IGDLKKLVILALRGSDMKELV--GEIGQLTQLRLL----------IAP---IL- 351 (878)
Q Consensus 292 i~~L~~L~~L~L~~~~l~~--l~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L----------ip~---~l- 351 (878)
|+++++|++|+|++|.++. +.. ++++++|++|++++|.++.++ ..++++++|++| .+. .+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 9999999999999999875 433 999999999999999887763 568988888887 111 22
Q ss_pred -cCCcEEEccCCCCCccccccccccccccCcccccCCC------CCCEEEeecCCCC-CCCcchh---cccCCceEEEEe
Q 048809 352 -SRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLS------KLTSLEILIQDEK-TLPRDLS---FFKMLQRYRILI 420 (878)
Q Consensus 352 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~------~L~~L~l~~~~~~-~~~~~~~---~l~~L~~L~l~~ 420 (878)
++|+.|++..|.+.. ..+..++.+. +|+.|++++|... ..+..+. ....+..+.+..
T Consensus 173 ~~~L~~L~L~~n~l~~------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYS------------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp HCSSCCCEECCSBSCC------------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CCccceEECCCCcccc------------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 567777777766541 1112222222 4777777776532 2333332 123344444421
Q ss_pred cccccccccchhhhhhhhhhhccCCccccchhHH--hhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCce
Q 048809 421 GSQWTWDYISSEISEIFRLMVASGANICLNGGHI--MQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLL 498 (878)
Q Consensus 421 ~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 498 (878)
....... .. ........... ...++|+.|+++++.........+ ..+++|++|++.++. +.
T Consensus 241 ~~~~~~~-~~-------------~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~-i~ 303 (844)
T 3j0a_A 241 HIMGAGF-GF-------------HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNK-IN 303 (844)
T ss_dssp SCCBCSS-SC-------------SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCC-CC
T ss_pred ccccccc-cc-------------cccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCc-CC
Confidence 0000000 00 00000000000 013678888888765433222222 457888888888764 44
Q ss_pred EEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecC
Q 048809 499 CVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGC 578 (878)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 578 (878)
.+... ....+++|+.|+++++ .++.+. +..+..+++|+.|++.++ ++..+++. .+.++++|++|+++++
T Consensus 304 ~~~~~------~~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 304 KIADE------AFYGLDNLQVLNLSYN-LLGELY--SSNFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EECTT------TTTTCSSCCEEEEESC-CCSCCC--SCSCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC
T ss_pred CCChH------HhcCCCCCCEEECCCC-CCCccC--HHHhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC
Confidence 43221 4556788888888875 344331 223567788888888885 56666553 3467888888888886
Q ss_pred CcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-cccc-cccccccc
Q 048809 579 QNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKST-IHESTKKR 656 (878)
Q Consensus 579 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~-~~~~~~~~ 656 (878)
. +..++ .+++|+.|.++++ .++.++. ...+++.|+++++ .++ ++.. .+..
T Consensus 373 ~-l~~i~----------------~~~~L~~L~l~~N-~l~~l~~-----~~~~l~~L~ls~N-~l~~l~~~~~~~~---- 424 (844)
T 3j0a_A 373 A-LTTIH----------------FIPSIPDIFLSGN-KLVTLPK-----INLTANLIHLSEN-RLENLDILYFLLR---- 424 (844)
T ss_dssp C-SCCCS----------------SCCSCSEEEEESC-CCCCCCC-----CCTTCCEEECCSC-CCCSSTTHHHHTT----
T ss_pred C-CCccc----------------CCCCcchhccCCC-Ccccccc-----cccccceeecccC-ccccCchhhhhhc----
Confidence 4 33322 2778888888875 4555543 2567788888874 444 3321 1223
Q ss_pred ccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCc-----ccccCccccc
Q 048809 657 FHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNL-----INLVPSSTSF 731 (878)
Q Consensus 657 l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l-----~~l~~~~~~l 731 (878)
+++|+.|++++|.. ..++. ...+..+++|+.|+++++..- ...+..+..+
T Consensus 425 l~~L~~L~Ls~N~l--------------------~~~~~-----~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 425 VPHLQILILNQNRF--------------------SSCSG-----DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp CTTCCEEEEESCCC--------------------CCCCS-----SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred CCccceeeCCCCcc--------------------ccccc-----ccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 78888888888864 22111 011223466666666665432 1112234456
Q ss_pred CCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceee
Q 048809 732 QNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFC 811 (878)
Q Consensus 732 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 811 (878)
++|+.|+++++ +++.++ +..+..+++|++|+++++ .++.++... ..++|+.|+++++ +++.++
T Consensus 480 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-------------~~~~L~~L~Ls~N-~l~~~~ 542 (844)
T 3j0a_A 480 SHLQVLYLNHN-YLNSLP-PGVFSHLTALRGLSLNSN-RLTVLSHND-------------LPANLEILDISRN-QLLAPN 542 (844)
T ss_dssp CCEECCCCCHH-HHTTCC-TTSSSSCCSCSEEEEESC-CCSSCCCCC-------------CCSCCCEEEEEEE-CCCCCC
T ss_pred ccccEEECCCC-cccccC-hhHccchhhhheeECCCC-CCCccChhh-------------hhccccEEECCCC-cCCCCC
Confidence 66666776663 555553 233456667777777664 455554422 1256667777664 355444
Q ss_pred ccccceeEcCCcceEEEcCCC
Q 048809 812 SVNNCAFKFPSLERLVVEDCP 832 (878)
Q Consensus 812 ~~~~~~~~l~sL~~L~i~~C~ 832 (878)
.. .+++|+.|+++++|
T Consensus 543 ~~-----~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 543 PD-----VFVSLSVLDITHNK 558 (844)
T ss_dssp SC-----CCSSCCEEEEEEEC
T ss_pred hh-----HhCCcCEEEecCCC
Confidence 33 24566666666543
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=297.03 Aligned_cols=460 Identities=13% Similarity=0.108 Sum_probs=288.1
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l 308 (878)
++++++++.++.+|..+. ++|++|++++|.+..++...|.++++|++|+|++|.+..+ |..|+.+++|++|+|++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 789999999999998765 8999999999999999877789999999999999999877 78899999999999999999
Q ss_pred CCcccccCcccCcEEEeeCCCccc--chHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccC
Q 048809 309 GDMAIIGDLKKLVILALRGSDMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNN 386 (878)
Q Consensus 309 ~~l~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 386 (878)
+.++.. .+++|++|++++|.++. +|..++++++ |+.|++++|.+. . ..+..
T Consensus 82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~-----------L~~L~L~~n~l~------------~---~~~~~ 134 (520)
T 2z7x_B 82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQ-----------LKFLGLSTTHLE------------K---SSVLP 134 (520)
T ss_dssp CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTT-----------CCEEEEEESSCC------------G---GGGGG
T ss_pred eecCcc-ccCCccEEeccCCccccccchhhhccCCc-----------ceEEEecCcccc------------h---hhccc
Confidence 887444 89999999999998876 5677776654 455577777654 1 23444
Q ss_pred CCCC--CEEEeecCCC---CCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccc
Q 048809 387 LSKL--TSLEILIQDE---KTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIK 461 (878)
Q Consensus 387 l~~L--~~L~l~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~ 461 (878)
+++| +.|++++|.. ...|.++..+.. +.+++
T Consensus 135 l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~~l~l------------------------------------------- 170 (520)
T 2z7x_B 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNT-ESLHI------------------------------------------- 170 (520)
T ss_dssp GTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-EEEEE-------------------------------------------
T ss_pred cccceeeEEEeeccccccccccccccccccc-ceEEE-------------------------------------------
Confidence 5555 8888888765 233333222211 12221
Q ss_pred eEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCcccc
Q 048809 462 DLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESF 541 (878)
Q Consensus 462 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l 541 (878)
.+.+...... .+......+++|+.|++.++.... . |..+... ...++.+
T Consensus 171 --~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~--------------~-----------~~~~~~~---~~~l~~l 219 (520)
T 2z7x_B 171 --VFPTNKEFHF-ILDVSVKTVANLELSNIKCVLEDN--------------K-----------CSYFLSI---LAKLQTN 219 (520)
T ss_dssp --ECCSSSCCCC-CCCCCCTTCSEEEECCEEECCSTT--------------T-----------THHHHHH---HHGGGGC
T ss_pred --EeccCcchhh-hhhhhhhcccceeecccccccccc--------------c-----------cceeecc---hhhhccc
Confidence 2222211111 111111235555555555442100 0 0001100 0123456
Q ss_pred CCccEEEeecCCCcccccchhh--hhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcce
Q 048809 542 CKVKDIRVEWCDKLKNVFPLVI--GRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTS 619 (878)
Q Consensus 542 ~~L~~L~l~~c~~L~~l~~~~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 619 (878)
++|+.|++.++. +........ ....++|++|++++|.....++..... .....+++|+.++++++.. .
T Consensus 220 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~-------~~~~~l~~L~~l~l~~n~~--~ 289 (520)
T 2z7x_B 220 PKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD-------YSGTSLKALSIHQVVSDVF--G 289 (520)
T ss_dssp TTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCC-------CCSCCCCEEEEEEEEECCC--C
T ss_pred cchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhh-------cccccCceeEeccccccce--e
Confidence 667777766642 221100000 012357777777776543344433210 0002367777777776543 3
Q ss_pred ecCCCccccc---CCcceEEEecCCCccccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCch
Q 048809 620 FCTGDLHFEF---PSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDL 696 (878)
Q Consensus 620 ~~~~~~~~~~---~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l 696 (878)
+|.. ....+ ++|+.|++++|.....+. ... +++|++|++++|.. .
T Consensus 290 ~p~~-~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~----l~~L~~L~Ls~n~l--------------------~----- 337 (520)
T 2z7x_B 290 FPQS-YIYEIFSNMNIKNFTVSGTRMVHMLC--PSK----ISPFLHLDFSNNLL--------------------T----- 337 (520)
T ss_dssp SCTH-HHHHHHHTCCCSEEEEESSCCCCCCC--CSS----CCCCCEEECCSSCC--------------------C-----
T ss_pred cchh-hhhcccccCceeEEEcCCCccccccc--hhh----CCcccEEEeECCcc--------------------C-----
Confidence 3311 11112 568888888865333221 122 77888888888864 1
Q ss_pred hhhccccccccCCccEEEEccCCCcc--cccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccc
Q 048809 697 KQILKQESSHANNLEVLEIYGCDNLI--NLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEI 774 (878)
Q Consensus 697 ~~i~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~ 774 (878)
...+..+..+++|++|++++|.... .+|..+..+++|+.|+++++ .++...+...+..+++|++|++++|.--..+
T Consensus 338 -~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 415 (520)
T 2z7x_B 338 -DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415 (520)
T ss_dssp -TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGG
T ss_pred -hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcch
Confidence 1112344567888888888876433 44455677888888888874 5555223344566788899999887533333
Q ss_pred cccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCC-CccCCCcceeecc
Q 048809 775 VVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGG-ELSTPNLRKVQLK 853 (878)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~~~~L~~l~i~ 853 (878)
+.. ..++|+.|++++| +++.+|.. ...+++|++|++++| .++.+|.. ...+++|++|+++
T Consensus 416 ~~~--------------l~~~L~~L~Ls~N-~l~~ip~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 416 FRC--------------LPPRIKVLDLHSN-KIKSIPKQ---VVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp GGS--------------CCTTCCEEECCSS-CCCCCCGG---GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred hhh--------------hcccCCEEECCCC-cccccchh---hhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECc
Confidence 321 1378899999887 57788876 558889999999888 67788876 5568889999988
Q ss_pred cc
Q 048809 854 QW 855 (878)
Q Consensus 854 ~c 855 (878)
++
T Consensus 477 ~N 478 (520)
T 2z7x_B 477 TN 478 (520)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=299.77 Aligned_cols=526 Identities=13% Similarity=0.083 Sum_probs=355.2
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCC-CCC-CccccCCCCCcEEEccCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL-LAL-PSSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i-~~l-p~~i~~L~~L~~L~L~~~~ 307 (878)
+..+.++++++.+|. -.+++++|++++|.+..++...|.++++|++|+|++|.. ..+ |..|+++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 567888889999998 568999999999999988777789999999999999954 566 7889999999999999999
Q ss_pred CCCc--ccccCcccCcEEEeeCCCccc-chHh--hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKE-LVGE--IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLH 382 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (878)
++.+ ..++++++|++|++++|.++. +|.. +++++ +|+.|++++|.+.. .....
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-----------~L~~L~Ls~N~l~~-----------~~~~~ 142 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-----------ALTRLDLSKNQIRS-----------LYLHP 142 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS-----------SCCEEEEESCCCCC-----------CCCCG
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC-----------CCCEEECCCCcccc-----------cccch
Confidence 8854 789999999999999998876 4544 55544 56677888887651 11235
Q ss_pred cccCCCCCCEEEeecCCCCC-CCcchhcc--cCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccc
Q 048809 383 ELNNLSKLTSLEILIQDEKT-LPRDLSFF--KMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKG 459 (878)
Q Consensus 383 ~L~~l~~L~~L~l~~~~~~~-~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~ 459 (878)
.++++++|+.|++++|.... .+..+..+ ++|+.|++..+........ .+..... . .....
T Consensus 143 ~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~------------~~~~~~~----~-~~~~~ 205 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV------------DWGKCMN----P-FRNMV 205 (844)
T ss_dssp GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC------------CCCSSSC----T-TTTCC
T ss_pred hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc------------chhhcCC----c-cccCc
Confidence 68899999999999998655 45566555 7899988864332110000 0000000 0 00124
Q ss_pred cceEEecCcCCcccccccCcC-CCCCCCcEEEEccCCCceEEe-----ecccccccccCcccccceeeccccccccceec
Q 048809 460 IKDLCLGGSLDMKSVLYGSDG-EGFPQLKRLEVVKNSNLLCVV-----DTVDRATALTTAFPVLESLLLRHLSNLEKICR 533 (878)
Q Consensus 460 L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~-----~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~ 533 (878)
|+.|+++++.........+.. -..++++.|.+.....-..+. ......+ .....++|+.|+++++ .+..+.
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f-~~l~~~~L~~L~Ls~n-~l~~~~- 282 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF-AGLARSSVRHLDLSHG-FVFSLN- 282 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT-TTTTTSCCCEEECTTC-CCCEEC-
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh-hccccCCccEEECCCC-cccccC-
Confidence 899999887543322222211 123577888876321100000 0000000 1112478999999885 344432
Q ss_pred CCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeeccc
Q 048809 534 GPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCS 613 (878)
Q Consensus 534 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 613 (878)
+..+..+++|+.|++.++ ++..+++. .+.++++|++|+++++..-...+.... .+++|+.|++++
T Consensus 283 -~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------~l~~L~~L~L~~ 347 (844)
T 3j0a_A 283 -SRVFETLKDLKVLNLAYN-KINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFY------------GLPKVAYIDLQK 347 (844)
T ss_dssp -SCCSSSCCCCCEEEEESC-CCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCS------------SCTTCCEEECCS
T ss_pred -hhhhhcCCCCCEEECCCC-cCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhc------------CCCCCCEEECCC
Confidence 233567899999999995 66666553 557899999999999754322233333 489999999999
Q ss_pred CCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCC
Q 048809 614 LPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINF 692 (878)
Q Consensus 614 c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~ 692 (878)
+ .+..++.. ....+++|++|++++| .++ ++. +++|+.|++++|+.. . ++ .....++.++++.
T Consensus 348 N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~~---------~~~L~~L~l~~N~l~--~-l~--~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 348 N-HIAIIQDQ-TFKFLEKLQTLDLRDN-ALTTIHF---------IPSIPDIFLSGNKLV--T-LP--KINLTANLIHLSE 410 (844)
T ss_dssp C-CCCCCCSS-CSCSCCCCCEEEEETC-CSCCCSS---------CCSCSEEEEESCCCC--C-CC--CCCTTCCEEECCS
T ss_pred C-CCCccChh-hhcCCCCCCEEECCCC-CCCcccC---------CCCcchhccCCCCcc--c-cc--ccccccceeeccc
Confidence 7 56666543 3457899999999995 444 543 789999999999861 1 11 1133456666554
Q ss_pred CCchhhhc-cccccccCCccEEEEccCCCcccccC--cccccCCCcEEEecccCCceEee----chhhhhhhccceEEEE
Q 048809 693 HPDLKQIL-KQESSHANNLEVLEIYGCDNLINLVP--SSTSFQNLTTVAVDFCYGMINIL----TSSTAKSLVRLKQMKI 765 (878)
Q Consensus 693 ~~~l~~i~-~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~~c~~l~~l~----~~~~~~~l~~L~~L~i 765 (878)
.. ++.+. ...+..+++|+.|++++|.. ...+. ....+++|+.|+++++ .++... ....+.++++|+.|++
T Consensus 411 N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 411 NR-LENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CC-CCSSTTHHHHTTCTTCCEEEEESCCC-CCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred Cc-cccCchhhhhhcCCccceeeCCCCcc-cccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEEC
Confidence 32 22221 11234679999999999864 33222 2345789999999984 554321 1234677899999999
Q ss_pred ccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCCCccCC
Q 048809 766 FHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTP 845 (878)
Q Consensus 766 ~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~ 845 (878)
++| .++.++.. ....+++|+.|+++++ +++.++.. ... ++|+.|+++++. ++.++... .+
T Consensus 488 s~N-~l~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~l~~~---~~~-~~L~~L~Ls~N~-l~~~~~~~--~~ 547 (844)
T 3j0a_A 488 NHN-YLNSLPPG-----------VFSHLTALRGLSLNSN-RLTVLSHN---DLP-ANLEILDISRNQ-LLAPNPDV--FV 547 (844)
T ss_dssp CHH-HHTTCCTT-----------SSSSCCSCSEEEEESC-CCSSCCCC---CCC-SCCCEEEEEEEC-CCCCCSCC--CS
T ss_pred CCC-cccccChh-----------HccchhhhheeECCCC-CCCccChh---hhh-ccccEEECCCCc-CCCCChhH--hC
Confidence 986 57777653 2235899999999986 68888876 222 899999999985 55554433 56
Q ss_pred Ccceeeccc
Q 048809 846 NLRKVQLKQ 854 (878)
Q Consensus 846 ~L~~l~i~~ 854 (878)
+|+.+++.+
T Consensus 548 ~L~~l~l~~ 556 (844)
T 3j0a_A 548 SLSVLDITH 556 (844)
T ss_dssp SCCEEEEEE
T ss_pred CcCEEEecC
Confidence 899999987
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.6e-29 Score=291.55 Aligned_cols=482 Identities=17% Similarity=0.185 Sum_probs=296.1
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-c
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-L 292 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i 292 (878)
.....|. .+++++++|++++|.++.+++ .+ .+++|++|++++|.+..++.+.|.++++|++|+|++|.+..+|.. |
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 3344443 345788889998888887643 33 788899999988888888877778888899999998888877655 8
Q ss_pred cCCCCCcEEEccCCCCCCc---ccccCcccCcEEEeeCCC-cccchH-hhcccccCcccccccccCCcEEEccCCCCCcc
Q 048809 293 GLLQNLQTLSLDYCELGDM---AIIGDLKKLVILALRGSD-MKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWG 367 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~ 367 (878)
+.+++|++|++++|.++.+ ..++++++|++|++++|. +..+|. .++++++ |+.|++.+|.+.
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-----------L~~L~L~~n~l~-- 161 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-----------LNELEIKALSLR-- 161 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-----------EEEEEEEETTCC--
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc-----------cCeeeccCCccc--
Confidence 8888899999988887642 668888889999988885 666663 4665554 455577666654
Q ss_pred ccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchh-cccCCceEEEEecccccccccchhhhhhhhhhhccCCc
Q 048809 368 KVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLS-FFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGAN 446 (878)
Q Consensus 368 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~ 446 (878)
...+..++++++|+.|+++++....+|.++. .+++|+.|++..+.........
T Consensus 162 ----------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------- 215 (549)
T 2z81_A 162 ----------NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP---------------- 215 (549)
T ss_dssp ----------EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC----------------
T ss_pred ----------ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccc----------------
Confidence 2345667777888888888877766666543 5778888887644322110000
Q ss_pred cccchhHHhhccccceEEecCcCCcccccccC--cCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccc
Q 048809 447 ICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGS--DGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRH 524 (878)
Q Consensus 447 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 524 (878)
..+...+++|+.|++.++.........+ ....+++|+.|++.+|. +..+.............+++|+.|.+.+
T Consensus 216 ----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 290 (549)
T 2z81_A 216 ----LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRR 290 (549)
T ss_dssp ----CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred ----cchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc-ccccccccccchhhhhhhcccccccccc
Confidence 0011124677777777654322111111 01346788888887764 1111100000000235567788887776
Q ss_pred cccccceec-CCC--CccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccc
Q 048809 525 LSNLEKICR-GPL--AAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVI 601 (878)
Q Consensus 525 ~~~L~~~~~-~~~--~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 601 (878)
+. +..+.. ... ....+++|+.|++.++ ++..+|. ..++++++|++|++++|.....++.... ...
T Consensus 291 ~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------~~~ 358 (549)
T 2z81_A 291 LH-IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSA---------CKG 358 (549)
T ss_dssp CB-CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHHT---------CTT
T ss_pred cc-cchhhhcccchhhhhhcccceEEEeccC-ccccCCH-HHHhcCccccEEEccCCccccccccchh---------hhh
Confidence 43 111100 000 0123578999999885 5776654 3446789999999999876554432110 012
Q ss_pred cccccceeecccCCCcceecC-CCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeec
Q 048809 602 ELTQLTTLELCSLPQLTSFCT-GDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETV 679 (878)
Q Consensus 602 ~~~~L~~L~L~~c~~l~~~~~-~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~ 679 (878)
.+++|+.|++++| .++.++. +.....+++|++|++++| +++ +|..+.. +++|++|++++|..
T Consensus 359 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~-----~~~L~~L~Ls~N~l--------- 422 (549)
T 2z81_A 359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQW-----PEKMRFLNLSSTGI--------- 422 (549)
T ss_dssp SSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCC-----CTTCCEEECTTSCC---------
T ss_pred ccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcc-----cccccEEECCCCCc---------
Confidence 3889999999986 4554431 112457889999999986 566 7765433 78999999999874
Q ss_pred cccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhcc
Q 048809 680 ENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVR 759 (878)
Q Consensus 680 ~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 759 (878)
...+. . ..++|++|++++|. ++.++ ..+++|++|+++++ +++.++. ...+++
T Consensus 423 -----------~~l~~-------~--~~~~L~~L~Ls~N~-l~~~~---~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~ 474 (549)
T 2z81_A 423 -----------RVVKT-------C--IPQTLEVLDVSNNN-LDSFS---LFLPRLQELYISRN-KLKTLPD---ASLFPV 474 (549)
T ss_dssp -----------SCCCT-------T--SCTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSSCCC---GGGCTT
T ss_pred -----------ccccc-------h--hcCCceEEECCCCC-hhhhc---ccCChhcEEECCCC-ccCcCCC---cccCcc
Confidence 11111 0 02456666666664 33332 35666677776663 5555432 134666
Q ss_pred ceEEEEccccccccccccccccccccccccccccccchhhccccCccccee
Q 048809 760 LKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSF 810 (878)
Q Consensus 760 L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 810 (878)
|+.|++++| .++.++.. ....+++|+.|++++++-..+.
T Consensus 475 L~~L~Ls~N-~l~~~~~~-----------~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 475 LLVMKISRN-QLKSVPDG-----------IFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCEEECCSS-CCCCCCTT-----------GGGGCTTCCEEECCSSCBCCCH
T ss_pred CCEEecCCC-ccCCcCHH-----------HHhcCcccCEEEecCCCccCCC
Confidence 777777664 35544432 1233666666666666543333
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=8.1e-29 Score=289.01 Aligned_cols=497 Identities=17% Similarity=0.154 Sum_probs=332.4
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCC
Q 048809 229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 307 (878)
.+.++.++..++.+|..+ .+++++|++++|.+..++...|..+++|++|+|++|.+..++ ..|+++++|++|++++|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 466777878888898765 368999999999999998877899999999999999998875 668999999999999999
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
++.+ ..++++++|++|++++|.++.+|. .+++++ +|+.|++.+|.+.. ...+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-----------~L~~L~L~~n~l~~-----------~~lp~~~ 145 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----------TLKELNVAHNLIQS-----------FKLPEYF 145 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT-----------TCCEEECCSSCCCC-----------CCCCGGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccc-----------cccEEecCCCccce-----------ecChhhh
Confidence 8865 679999999999999999988876 466544 56677888886651 1246778
Q ss_pred cCCCCCCEEEeecCCCCCCC-cchhcccCC----ceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccc
Q 048809 385 NNLSKLTSLEILIQDEKTLP-RDLSFFKML----QRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKG 459 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~ 459 (878)
+++++|+.|++++|....++ ..+..+.+| ..+++..+.... ....... ..+
T Consensus 146 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-----------------------~~~~~~~-~~~ 201 (570)
T 2z63_A 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-----------------------IQPGAFK-EIR 201 (570)
T ss_dssp GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-----------------------ECTTTTT-TCE
T ss_pred cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-----------------------cCHHHhc-cCc
Confidence 99999999999999877664 455566666 555543211100 0111111 136
Q ss_pred cceEEecCcCCcccccccCcCCCCCCCcEEEEc--cCC---CceEEeecccccccccCccc--ccceeecccccccccee
Q 048809 460 IKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVV--KNS---NLLCVVDTVDRATALTTAFP--VLESLLLRHLSNLEKIC 532 (878)
Q Consensus 460 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~---~l~~~~~~~~~~~~~~~~~~--~L~~L~L~~~~~L~~~~ 532 (878)
|++|++.++.......+... ..+++++.+.+. ... .+..+... ....++ .++.+.+.++..+...
T Consensus 202 L~~L~l~~n~~~~~~~~~~~-~~l~~l~~~~l~~~~~~~~~~l~~~~~~------~~~~l~~l~l~~l~l~~~~~~~~~- 273 (570)
T 2z63_A 202 LHKLTLRNNFDSLNVMKTCI-QGLAGLEVHRLVLGEFRNEGNLEKFDKS------ALEGLCNLTIEEFRLAYLDYYLDD- 273 (570)
T ss_dssp EEEEEEESCCSCTTHHHHHH-HTTTTCEEEEEEEEECCCCSSCEECCTT------TTGGGGGSEEEEEEEEETTEEESC-
T ss_pred ceeEecccccccccchhhhh-cCccccceeeeccccccCchhhhhcchh------hhccccccchhhhhhhcchhhhhh-
Confidence 77888776532211111111 235555554432 111 11111100 111122 2344444443232221
Q ss_pred cCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecc
Q 048809 533 RGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELC 612 (878)
Q Consensus 533 ~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 612 (878)
.+..+..+++|+.|++.++ .+..+|. .+..+ +|++|++++|.. ..++. ..+++|+.|++.
T Consensus 274 -~~~~~~~l~~L~~L~l~~~-~l~~l~~--~~~~~-~L~~L~l~~n~~-~~l~~--------------~~l~~L~~L~l~ 333 (570)
T 2z63_A 274 -IIDLFNCLTNVSSFSLVSV-TIERVKD--FSYNF-GWQHLELVNCKF-GQFPT--------------LKLKSLKRLTFT 333 (570)
T ss_dssp -STTTTGGGTTCSEEEEESC-EECSCCB--CCSCC-CCSEEEEESCBC-SSCCB--------------CBCSSCCEEEEE
T ss_pred -chhhhcCcCcccEEEecCc-cchhhhh--hhccC-CccEEeeccCcc-cccCc--------------ccccccCEEeCc
Confidence 1223456788888888876 4555554 23455 888888888753 34432 127788888888
Q ss_pred cCCCcceecCCCcccccCCcceEEEecCCCccc---cccccccccccccceeEEEEecccccccceeeeccccccceeec
Q 048809 613 SLPQLTSFCTGDLHFEFPSLEKLKILECPQVKF---KSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKG 689 (878)
Q Consensus 613 ~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~l---p~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~ 689 (878)
++.....++. ..+++|++|++++|.--.. |.. +.. +++|+.|++++|..
T Consensus 334 ~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~-~~~----~~~L~~L~l~~n~l------------------- 385 (570)
T 2z63_A 334 SNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQS-DFG----TTSLKYLDLSFNGV------------------- 385 (570)
T ss_dssp SCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHH-HHT----CSCCCEEECCSCSE-------------------
T ss_pred CCcccccccc----ccCCCCCEEeCcCCccCcccccccc-ccc----cCccCEEECCCCcc-------------------
Confidence 8654433322 4678888888887543222 332 333 78888888888764
Q ss_pred cCCCCchhhhccccccccCCccEEEEccCCCccccc-CcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccc
Q 048809 690 INFHPDLKQILKQESSHANNLEVLEIYGCDNLINLV-PSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHC 768 (878)
Q Consensus 690 l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C 768 (878)
..++.. +..+++|++|++++|......+ ..+..+++|+.|++++| .+.... +..+..+++|++|++++|
T Consensus 386 -------~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 386 -------ITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp -------EEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTC
T ss_pred -------cccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC-cccccc-hhhhhcCCcCcEEECcCC
Confidence 122222 5667999999999987544333 35678999999999996 565553 455678999999999998
Q ss_pred ccc-ccccccccccccccccccccccccchhhccccCccccee-eccccceeEcCCcceEEEcCCCCcccccCC-CccCC
Q 048809 769 KMI-TEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSF-CSVNNCAFKFPSLERLVVEDCPNMSIFSGG-ELSTP 845 (878)
Q Consensus 769 ~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~~~ 845 (878)
.-. ..+|. ....+++|+.|++++|. ++.+ |.. +..+++|++|++++| +++.+|.. ...++
T Consensus 456 ~l~~~~~p~------------~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 456 SFQENFLPD------------IFTELRNLTFLDLSQCQ-LEQLSPTA---FNSLSSLQVLNMASN-QLKSVPDGIFDRLT 518 (570)
T ss_dssp EEGGGEECS------------CCTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred cCccccchh------------hhhcccCCCEEECCCCc-cccCChhh---hhcccCCCEEeCCCC-cCCCCCHHHhhccc
Confidence 633 23443 23458999999999985 6666 444 567899999999999 57776654 56789
Q ss_pred Ccceeecccc
Q 048809 846 NLRKVQLKQW 855 (878)
Q Consensus 846 ~L~~l~i~~c 855 (878)
+|++|+++++
T Consensus 519 ~L~~L~l~~N 528 (570)
T 2z63_A 519 SLQKIWLHTN 528 (570)
T ss_dssp TCCEEECCSS
T ss_pred CCcEEEecCC
Confidence 9999999984
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=7.6e-28 Score=284.86 Aligned_cols=182 Identities=19% Similarity=0.213 Sum_probs=119.5
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SL 292 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i 292 (878)
.+...| ..++.++++|++++|.++.+++. + .+++||+|++++|.+..++++.|.++++|++|+|++|+++.+|. .|
T Consensus 42 ~l~~vP-~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 42 NFYKIP-DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp CCSSCC-SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CcCccC-CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 344444 34567788888888888887753 3 78888888888888888887778888888888888888888764 46
Q ss_pred cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCccc--chHhhcccccCcccccccccCCcEEEccCCCCCccc
Q 048809 293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGK 368 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~ 368 (878)
.+|++|++|+|++|.++.+ ..++++++|++|++++|.++. +|..+++++ +|+.|++.+|.+....
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-----------~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----------NLEHLDLSSNKIQSIY 189 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----------TCCEEECCSSCCCEEC
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-----------hhhhhcccCccccccc
Confidence 8888888888888887766 457888888888888887764 355555544 4555677776654110
Q ss_pred cccccccccccCcccccCCCC-CCEEEeecCCCCCCCcchhcccCCceEEE
Q 048809 369 VEGVDGERRNASLHELNNLSK-LTSLEILIQDEKTLPRDLSFFKMLQRYRI 418 (878)
Q Consensus 369 ~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 418 (878)
...+..+..+.. +..++++.+....++........+..+.+
T Consensus 190 ---------~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l 231 (635)
T 4g8a_A 190 ---------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 231 (635)
T ss_dssp ---------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred ---------cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence 111223333322 23566666666555544333333334443
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.8e-28 Score=281.80 Aligned_cols=481 Identities=16% Similarity=0.173 Sum_probs=300.3
Q ss_pred EEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCC
Q 048809 231 AISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELG 309 (878)
Q Consensus 231 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~ 309 (878)
..+.+++.++.+|..+. ++|++|++++|.+..++...|.++++|++|++++|.+..+| ..|+.+++|++|++++|.++
T Consensus 9 ~c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EEECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred eEECCCCccccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 35677778888887653 78999999999888887666789999999999999888765 67889999999999999887
Q ss_pred Cc--ccccCcccCcEEEeeCCCcccc--hHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 310 DM--AIIGDLKKLVILALRGSDMKEL--VGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 310 ~l--~~i~~L~~L~~L~l~~~~l~~l--p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
.+ ..++++++|++|++++|.++.+ |..+++++ +|+.|++.+|.... ......+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-----------~L~~L~L~~n~~~~-----------~~~~~~~~ 145 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-----------NLQTLRIGNVETFS-----------EIRRIDFA 145 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-----------TCCEEEEEESSSCC-----------EECTTTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-----------CccEEECCCCcccc-----------ccCHhhhh
Confidence 65 4488899999999998877743 44455444 44555666654220 11224566
Q ss_pred CCCCCCEEEeecCCCCC-CCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEE
Q 048809 386 NLSKLTSLEILIQDEKT-LPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLC 464 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~ 464 (878)
++++|++|+++++.... .|.++.. +++|++|+
T Consensus 146 ~l~~L~~L~L~~n~l~~~~~~~l~~-----------------------------------------------l~~L~~L~ 178 (549)
T 2z81_A 146 GLTSLNELEIKALSLRNYQSQSLKS-----------------------------------------------IRDIHHLT 178 (549)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTT-----------------------------------------------CSEEEEEE
T ss_pred cccccCeeeccCCcccccChhhhhc-----------------------------------------------cccCceEe
Confidence 67777777777776543 3333322 34455555
Q ss_pred ecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecC--CCCccccC
Q 048809 465 LGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRG--PLAAESFC 542 (878)
Q Consensus 465 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~--~~~~~~l~ 542 (878)
+.++... . .+......+++|++|++.++. +...... ... ....+++|+.|++.++. ++..... ......++
T Consensus 179 l~~n~~~-~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 179 LHLSESA-F-LLEIFADILSSVRYLELRDTN-LARFQFS--PLP-VDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYIL 251 (549)
T ss_dssp EECSBST-T-HHHHHHHSTTTBSEEEEESCB-CTTCCCC--CCS-SCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCT
T ss_pred cccCccc-c-cchhhHhhcccccEEEccCCc-ccccccc--ccc-hhhhhhcccceeccccc-cchhHHHHHHHHhhhhc
Confidence 5544321 1 111111347889999998764 2211000 000 22346677777777642 2211000 01124566
Q ss_pred CccEEEeecCCCcccccc-----hhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809 543 KVKDIRVEWCDKLKNVFP-----LVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL 617 (878)
Q Consensus 543 ~L~~L~l~~c~~L~~l~~-----~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 617 (878)
+|+.+.+.+|. +..+.. ...+..+++|+.|.+.++..-........ .......++|+.|+++++. +
T Consensus 252 ~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l-------~~~~~~~~~L~~L~l~~n~-l 322 (549)
T 2z81_A 252 ELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL-------STVYSLLEKVKRITVENSK-V 322 (549)
T ss_dssp TCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC-------CHHHHHSTTCCEEEEESSC-C
T ss_pred ccccccccccc-ccccccccccchhhhhhhcccccccccccccchhhhcccc-------hhhhhhcccceEEEeccCc-c
Confidence 77777777763 222211 01224566777777776532111000000 0001224567777777653 5
Q ss_pred ceecCCCcccccCCcceEEEecCCCcc-ccc--cccccccccccceeEEEEecccccccceeeeccccccceeeccCCCC
Q 048809 618 TSFCTGDLHFEFPSLEKLKILECPQVK-FKS--TIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHP 694 (878)
Q Consensus 618 ~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~--~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~ 694 (878)
+.+|.. ....+++|++|++++|.... +|. ..+.. +++|+.|++++|..
T Consensus 323 ~~ip~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~----l~~L~~L~Ls~N~l------------------------ 373 (549)
T 2z81_A 323 FLVPCS-FSQHLKSLEFLDLSENLMVEEYLKNSACKGA----WPSLQTLVLSQNHL------------------------ 373 (549)
T ss_dssp CCCCHH-HHHHCTTCCEEECCSSCCCHHHHHHHTCTTS----STTCCEEECTTSCC------------------------
T ss_pred ccCCHH-HHhcCccccEEEccCCccccccccchhhhhc----cccCcEEEccCCcc------------------------
Confidence 554431 11356777777777754333 332 11233 67777777777753
Q ss_pred chhhhcc--ccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccc
Q 048809 695 DLKQILK--QESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMIT 772 (878)
Q Consensus 695 ~l~~i~~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~ 772 (878)
+.++. ..+..+++|++|++++|. ++.+|..+..+++|++|++++| +++.++. .. .++|+.|++++| .++
T Consensus 374 --~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~-~~---~~~L~~L~Ls~N-~l~ 444 (549)
T 2z81_A 374 --RSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CI---PQTLEVLDVSNN-NLD 444 (549)
T ss_dssp --CCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTS-CCSCCCT-TS---CTTCSEEECCSS-CCS
T ss_pred --cccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCC-Ccccccc-hh---cCCceEEECCCC-Chh
Confidence 22211 235667899999999984 6688888888899999999985 5766532 22 258999999986 466
Q ss_pred cccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCC-CccCCCcceee
Q 048809 773 EIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGG-ELSTPNLRKVQ 851 (878)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~~~~L~~l~ 851 (878)
.++. .+++|++|+++++ +++.+|.. ..+++|++|++++| .++.+|.+ ...+++|+.|+
T Consensus 445 ~~~~---------------~l~~L~~L~Ls~N-~l~~ip~~----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 445 SFSL---------------FLPRLQELYISRN-KLKTLPDA----SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp CCCC---------------CCTTCCEEECCSS-CCSSCCCG----GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred hhcc---------------cCChhcEEECCCC-ccCcCCCc----ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEE
Confidence 5542 3789999999987 68888764 35899999999998 56666654 56789999999
Q ss_pred ccccC
Q 048809 852 LKQWD 856 (878)
Q Consensus 852 i~~c~ 856 (878)
+++++
T Consensus 504 l~~N~ 508 (549)
T 2z81_A 504 LHTNP 508 (549)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 98754
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.8e-28 Score=282.25 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=27.4
Q ss_pred CCCcEEEeeCCCCC-CCCCCC-CCCCccEEEeecCC
Q 048809 227 KDCTAISLNNSNIN-ELPQGF-ECPQLKYFRIHNDH 260 (878)
Q Consensus 227 ~~lr~l~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~ 260 (878)
.+++.|+++++.+. .+|+.+ .+++|++|++++|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~ 116 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG 116 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCc
Confidence 46888999998876 466666 89999999998883
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=5.2e-28 Score=280.81 Aligned_cols=459 Identities=15% Similarity=0.136 Sum_probs=265.7
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCC
Q 048809 228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYC 306 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~ 306 (878)
..++++++++.++.+|..+. ++|++|++++|.+..++...|.++++|++|+|++|.++.+ |..|+.+++|++|+|++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 34899999999999998664 8999999999999999987789999999999999999887 677999999999999999
Q ss_pred CCCCcccccCcccCcEEEeeCCCcccch--HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 307 ELGDMAIIGDLKKLVILALRGSDMKELV--GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 307 ~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
.++.++.. .+++|++|++++|.++.+| ..++++++ |+.|++++|.+. ......+
T Consensus 111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~-----------L~~L~L~~n~l~------------~~~~~~l 166 (562)
T 3a79_B 111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTK-----------LTFLGLSAAKFR------------QLDLLPV 166 (562)
T ss_dssp CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTT-----------CCEEEEECSBCC------------TTTTGGG
T ss_pred cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCc-----------ccEEecCCCccc------------cCchhhh
Confidence 99887444 8999999999999988765 66776554 555677777654 1223344
Q ss_pred cCCCCCCEEEeecCCC--CC-CCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccc
Q 048809 385 NNLSKLTSLEILIQDE--KT-LPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIK 461 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~--~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~ 461 (878)
..+ +|+.|++++|.. .. .|.++..+.. +.+.+
T Consensus 167 ~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l------------------------------------------- 201 (562)
T 3a79_B 167 AHL-HLSCILLDLVSYHIKGGETESLQIPNT-TVLHL------------------------------------------- 201 (562)
T ss_dssp TTS-CEEEEEEEESSCCCCSSSCCEEEECCE-EEEEE-------------------------------------------
T ss_pred hhc-eeeEEEeecccccccccCcccccccCc-ceEEE-------------------------------------------
Confidence 444 458999988876 22 2332211110 12221
Q ss_pred eEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCcccc
Q 048809 462 DLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESF 541 (878)
Q Consensus 462 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l 541 (878)
.+.+..... ..+......+++|+.|++.+.... |..+... ...+..+
T Consensus 202 --~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~---------------------------~~~l~~~---~~~l~~l 248 (562)
T 3a79_B 202 --VFHPNSLFS-VQVNMSVNALGHLQLSNIKLNDEN---------------------------CQRLMTF---LSELTRG 248 (562)
T ss_dssp --EECSSSCCC-CCCEEEESSEEEEEEEEEECCSTT---------------------------HHHHHHH---HHHHHSC
T ss_pred --EecCccchh-hhhhhcccccceEEEecccccccc---------------------------cchHHHH---HHHHhcc
Confidence 121111111 011111123455666666543200 0011100 0012233
Q ss_pred CCccEEEeecCCC----cccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809 542 CKVKDIRVEWCDK----LKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL 617 (878)
Q Consensus 542 ~~L~~L~l~~c~~----L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 617 (878)
++|+.+.+.++.- +..+++ ....++|++|++++|.....++..... .....++.|+.+++.... +
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~ip~~~~~-------~~~~~L~~L~~~~~~~~~-~ 317 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQ---FFWPRPVEYLNIYNLTITERIDREEFT-------YSETALKSLMIEHVKNQV-F 317 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHH---HHTTSSEEEEEEEEEEECSCCCCCCCC-------CCSCSCCEEEEEEEEECC-C
T ss_pred CcceEEEecCCcCcHHHHHHHHH---hhhcccccEEEEeccEeeccccchhhh-------cccccchheehhhcccce-e
Confidence 4445555444311 111111 112236666666665433334332210 000112333333332221 1
Q ss_pred ceecCCCc--ccccCCcceEEEecCCCccccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCc
Q 048809 618 TSFCTGDL--HFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPD 695 (878)
Q Consensus 618 ~~~~~~~~--~~~~~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~ 695 (878)
.++.... ....++|++|++++|.....+. ... +++|++|++++|..
T Consensus 318 -~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~----l~~L~~L~l~~n~l------------------------- 365 (562)
T 3a79_B 318 -LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPS----PSSFTFLNFTQNVF------------------------- 365 (562)
T ss_dssp -SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSS----CCCCCEEECCSSCC-------------------------
T ss_pred -ecChhhhhhhhccCcceEEEccCCCcccccC--ccC----CCCceEEECCCCcc-------------------------
Confidence 1111000 0012457777777754322211 122 67777777777753
Q ss_pred hhhhccccccccCCccEEEEccCCCccc---ccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccc
Q 048809 696 LKQILKQESSHANNLEVLEIYGCDNLIN---LVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMIT 772 (878)
Q Consensus 696 l~~i~~~~~~~l~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~ 772 (878)
....+..+..+++|++|++++|. ++. +|..+..+++|+.|+++++ .++...+...+..+++|++|++++|.--.
T Consensus 366 -~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 366 -TDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp -CTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred -ccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 11112344556777777777764 332 2334567777888888773 45542234445667788888887765222
Q ss_pred cccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCC-CccCCCcceee
Q 048809 773 EIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGG-ELSTPNLRKVQ 851 (878)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~~~~L~~l~ 851 (878)
.++.. ..++|+.|+++++ .++.+|.. ...+++|++|++++| .++.+|.+ ...+++|+.++
T Consensus 443 ~~~~~--------------l~~~L~~L~L~~N-~l~~ip~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 443 SVFRC--------------LPPKVKVLDLHNN-RIMSIPKD---VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp GGGSS--------------CCTTCSEEECCSS-CCCCCCTT---TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred chhhh--------------hcCcCCEEECCCC-cCcccChh---hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence 22221 1267888888776 67777776 457788888888876 56678776 55678888888
Q ss_pred ccc
Q 048809 852 LKQ 854 (878)
Q Consensus 852 i~~ 854 (878)
+++
T Consensus 504 l~~ 506 (562)
T 3a79_B 504 LHD 506 (562)
T ss_dssp CCS
T ss_pred ecC
Confidence 876
No 19
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=3.6e-29 Score=287.17 Aligned_cols=188 Identities=15% Similarity=0.122 Sum_probs=150.6
Q ss_pred CCcEEEEEeCChHHhhccCC-CCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhc
Q 048809 2 GGCKVLLTARSHDVLSSKMD-CQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKN 80 (878)
Q Consensus 2 ~gs~iivTtR~~~v~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~ 80 (878)
+|||||||||++.|+.. ++ ...+|+|++|+++|||+||+++|+....++++++++++|+++|+|+||||+++|+.|+.
T Consensus 264 ~gs~ilvTTR~~~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~ 342 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEP 342 (549)
T ss_dssp TTCEEEEEESBGGGGGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS
T ss_pred CCCEEEEEcCCHHHHHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhcc
Confidence 69999999999999995 65 44689999999999999999999643335788999999999999999999999999987
Q ss_pred CCChHHHHHHHHH-HHccCcchhhhhhhhhcccccCCCCCChHHHHHHHh-----------hhcccC-CccHHHHHHHHh
Q 048809 81 KSSLYVWKDALRQ-LKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFL-----------LIGYSY-IRNVKDLLYHGM 147 (878)
Q Consensus 81 ~~~~~~w~~~l~~-l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~-----------~~~~fp-~~~~~~li~~w~ 147 (878)
+ +. +|.+.+.. ++... ..++++++++||++||+ ++|.||+ |||+|| ++.|. ++.|+
T Consensus 343 ~-~w-~~~~~l~~~l~~~~-~~~i~~~l~~Sy~~L~~------~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~ 411 (549)
T 2a5y_B 343 K-TF-EKMAQLNNKLESRG-LVGVECITPYSYKSLAM------ALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWS 411 (549)
T ss_dssp S-SH-HHHHHHHHHHHHHC-SSTTCCCSSSSSSSHHH------HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHH
T ss_pred c-hH-HHHHHhHHHhhccc-HHHHHHHHhcccccccH------HHHHHHhccchhhhhHhhheeeeCCCCeee--eeeee
Confidence 6 32 23233332 22222 34899999999999999 9999999 999999 88887 88999
Q ss_pred hc--cCccCC---CcHHHHHHHHHHHHHHHHhcccccccc--CCcceehhHHHHHHHHHHHcccc
Q 048809 148 GL--GLFQNI---NTVDEARDRAHTLVDKLKNSCLLLGGW--RSEWFSMHDVVRDVAISIASRDQ 205 (878)
Q Consensus 148 ~~--g~i~~~---~~~~~~~~~~~~~l~~L~~~~l~~~~~--~~~~~~mhdli~~~~~~~~~~e~ 205 (878)
|+ ||+... .+.+++++ ++++|+++||++... ....|+|||+||++|++++.+++
T Consensus 412 a~~~G~i~~~~~~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 412 CVIPVDICSNEEEQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHSCC-------CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eeccceeccCCCCCCHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99 999643 34566665 899999999998763 34579999999999999887654
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=8.5e-27 Score=277.45 Aligned_cols=408 Identities=14% Similarity=0.117 Sum_probs=259.9
Q ss_pred CCCcEEEeeCCCCC-CCCCCC-CCCCccEEEe-ecCCC------------------------------------------
Q 048809 227 KDCTAISLNNSNIN-ELPQGF-ECPQLKYFRI-HNDHS------------------------------------------ 261 (878)
Q Consensus 227 ~~lr~l~l~~~~~~-~l~~~~-~~~~Lr~L~l-~~~~~------------------------------------------ 261 (878)
.++..|+|+++.+. .+|+.+ .+++|++|++ ++|.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56889999999886 577666 8999999999 55510
Q ss_pred -----------------------------------CCCCchhhcCCCCCcEEEeeCCCCCC------------------C
Q 048809 262 -----------------------------------LKIPDNFFTGMTELRVLDFTRMHLLA------------------L 288 (878)
Q Consensus 262 -----------------------------------~~l~~~~~~~l~~Lr~L~Ls~~~i~~------------------l 288 (878)
..+|.. |+++++|++|+|++|.++. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 016765 5889999999999999987 8
Q ss_pred Ccccc--CCCCCcEEEccCCCCC-Cc-ccccCcccCcEEEeeCCC-ccc--chHhhcccc-cCcccccccccCCcEEEcc
Q 048809 289 PSSLG--LLQNLQTLSLDYCELG-DM-AIIGDLKKLVILALRGSD-MKE--LVGEIGQLT-QLRLLIAPILSRLEELYIG 360 (878)
Q Consensus 289 p~~i~--~L~~L~~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~L~-~L~~Lip~~l~~L~~L~l~ 360 (878)
|..++ ++++|++|+|++|.+. .+ ..+++|++|++|++++|. ++. +|..++++. .+. .+++|+.|++.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~-----~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-----TGPKIQIFYMG 556 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT-----TTTTCCEEECC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc-----ccCCccEEEee
Confidence 99988 9999999999999854 33 789999999999999997 875 888888775 333 34577888888
Q ss_pred CCCCCccccccccccccccCcc--cccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhh
Q 048809 361 ESPIEWGKVEGVDGERRNASLH--ELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFR 438 (878)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 438 (878)
+|.+. ..+. .++++++|+.|++++|....+| .+..+++|+.|++
T Consensus 557 ~N~L~-------------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L-------------------- 602 (876)
T 4ecn_A 557 YNNLE-------------EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL-------------------- 602 (876)
T ss_dssp SSCCC-------------BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC--------------------
T ss_pred CCcCC-------------ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC--------------------
Confidence 88765 2344 6888889999999888877777 4444555555444
Q ss_pred hhhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCC-CcEEEEccCCCceEEeecccccccccCccccc
Q 048809 439 LMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQ-LKRLEVVKNSNLLCVVDTVDRATALTTAFPVL 517 (878)
Q Consensus 439 ~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L 517 (878)
+++... .+...+ ..+++ |++|++.++. +..++.. . .....++|
T Consensus 603 ---------------------------s~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~-L~~lp~~---~--~~~~~~~L 646 (876)
T 4ecn_A 603 ---------------------------DYNQIE-EIPEDF--CAFTDQVEGLGFSHNK-LKYIPNI---F--NAKSVYVM 646 (876)
T ss_dssp ---------------------------CSSCCS-CCCTTS--CEECTTCCEEECCSSC-CCSCCSC---C--CTTCSSCE
T ss_pred ---------------------------cCCccc-cchHHH--hhccccCCEEECcCCC-CCcCchh---h--hccccCCC
Confidence 433322 222222 23555 7777766653 3332210 0 11123347
Q ss_pred ceeeccccccccceecCCCCcc--ccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccC
Q 048809 518 ESLLLRHLSNLEKICRGPLAAE--SFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSN 595 (878)
Q Consensus 518 ~~L~L~~~~~L~~~~~~~~~~~--~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 595 (878)
+.|+++++.--..++..+...+ .+++|+.|++.+| .+..+|. ..+..+++|+.|++++| .+..++......
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~-~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~---- 719 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLKP---- 719 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCH-HHHHTTCCCSEEECCSC-CCSCCCTTSSSC----
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCH-HHHccCCCCCEEECCCC-cCCccChHHhcc----
Confidence 7777766432111111111112 3457888888885 5666654 34567888999999886 344555432210
Q ss_pred CCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccc
Q 048809 596 SNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEE 674 (878)
Q Consensus 596 ~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~ 674 (878)
.......+++|+.|++++| .++.++.......+++|+.|++++| .++ +|..+.. +++|+.|++++|+.
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~-----L~~L~~L~Ls~N~~---- 788 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLN-----SSQLKAFGIRHQRD---- 788 (876)
T ss_dssp TTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGG-----CTTCCEEECCCCBC----
T ss_pred ccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhc-----CCCCCEEECCCCCC----
Confidence 0001123458888888886 4666664211126788888888874 455 7766553 78888888877653
Q ss_pred eeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEe
Q 048809 675 LFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINI 748 (878)
Q Consensus 675 ~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l 748 (878)
++.+. +....+..+..+++|+.|++++|.. ..+|..+ .++|+.|++++| .+..+
T Consensus 789 ---------------ls~N~-l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~~~L~~LdLs~N-~l~~i 842 (876)
T 4ecn_A 789 ---------------AEGNR-ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADN-PNISI 842 (876)
T ss_dssp ---------------TTCCB-CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--CSSSCEEECCSC-TTCEE
T ss_pred ---------------ccccc-ccccChHHHhcCCCCCEEECCCCCC-CccCHhh--cCCCCEEECCCC-CCCcc
Confidence 22221 1112234555677777777777764 6666653 367777777774 34444
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=3e-25 Score=262.59 Aligned_cols=134 Identities=18% Similarity=0.316 Sum_probs=112.6
Q ss_pred ccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEE
Q 048809 225 VLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTL 301 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L 301 (878)
...++++|++++|.++.+++.. .+++|++|++++|.+..+|.+.|.++.+|++|+|++|.++.+|. .|+++++|++|
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence 3678999999999999987753 79999999999999999999989999999999999999999875 58999999999
Q ss_pred EccCCCCCCc---ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCC
Q 048809 302 SLDYCELGDM---AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 302 ~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
++++|.++.+ ..++++++|++|++++|.++.++ ..++.+.+++.+ +..+++..+.+.
T Consensus 154 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~-------~~~~~ls~n~l~ 214 (635)
T 4g8a_A 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------NLSLDLSLNPMN 214 (635)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC-------CCEEECTTCCCC
T ss_pred ccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh-------hhhhhcccCccc
Confidence 9999998642 67899999999999999998865 457777665543 334555555443
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=263.47 Aligned_cols=180 Identities=16% Similarity=0.231 Sum_probs=130.2
Q ss_pred CCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccC
Q 048809 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGL 294 (878)
Q Consensus 217 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~ 294 (878)
....|. .+++++++|++++|.++.+++. + .+++|++|++++|.+..++.+.|.++++|++|+|++|.++.+|.. .
T Consensus 12 l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~ 88 (520)
T 2z7x_B 12 LIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--P 88 (520)
T ss_dssp CSSCCC-SCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--C
T ss_pred cccccc-cccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--c
Confidence 333443 3458999999999999988743 3 899999999999999998766789999999999999999999887 8
Q ss_pred CCCCcEEEccCCCCCC--c-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccc
Q 048809 295 LQNLQTLSLDYCELGD--M-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEG 371 (878)
Q Consensus 295 L~~L~~L~L~~~~l~~--l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~ 371 (878)
+++|++|++++|.++. + ..++++++|++|++++|.++. ..++.+++| +|+.|++.+|.+..
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L---------~L~~L~l~~n~l~~----- 152 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHL---------NISKVLLVLGETYG----- 152 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTS---------CEEEEEEEECTTTT-----
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccc---------eeeEEEeecccccc-----
Confidence 9999999999999875 2 789999999999999998876 345554443 23777888776620
Q ss_pred ccccccccCcccccCCCC-CCEEEeecCCCC-CCCc-chhcccCCceEEEEe
Q 048809 372 VDGERRNASLHELNNLSK-LTSLEILIQDEK-TLPR-DLSFFKMLQRYRILI 420 (878)
Q Consensus 372 ~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~-~~~~-~~~~l~~L~~L~l~~ 420 (878)
....+..+..+.. .-.++++++... .++. .+..+++|+.+++..
T Consensus 153 -----~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 199 (520)
T 2z7x_B 153 -----EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199 (520)
T ss_dssp -----SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred -----cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence 0223444554442 223444444422 2222 233566777777654
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.1e-26 Score=272.59 Aligned_cols=135 Identities=21% Similarity=0.228 Sum_probs=85.0
Q ss_pred CCccEEEeecCCCC-CCCchhhcCCCCCcEEEe-eCCCCCCC-Cc-----------------------------------
Q 048809 249 PQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDF-TRMHLLAL-PS----------------------------------- 290 (878)
Q Consensus 249 ~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L-s~~~i~~l-p~----------------------------------- 290 (878)
.+++.|+|+++.+. .+|+. |+++++|++|+| ++|.+... |-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57899999999654 67766 599999999999 77643110 00
Q ss_pred --------------cc--cCCCCCcEEEccC--CCCCCc-ccccCcccCcEEEeeCCCccc------------------c
Q 048809 291 --------------SL--GLLQNLQTLSLDY--CELGDM-AIIGDLKKLVILALRGSDMKE------------------L 333 (878)
Q Consensus 291 --------------~i--~~L~~L~~L~L~~--~~l~~l-~~i~~L~~L~~L~l~~~~l~~------------------l 333 (878)
.+ .....++.+.+.. |.++.+ ..+++|++|++|++++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00 1112233333332 334434 668888888888888887776 6
Q ss_pred hHhhc--ccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCC-CCC--CCcch
Q 048809 334 VGEIG--QLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQD-EKT--LPRDL 407 (878)
Q Consensus 334 p~~i~--~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~-~~~--~~~~~ 407 (878)
|..++ +++ +|+.|++.+|.+. ...+..++++++|+.|++++|. ... +|..+
T Consensus 482 P~~l~f~~L~-----------~L~~L~Ls~N~l~------------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i 537 (876)
T 4ecn_A 482 NEELSWSNLK-----------DLTDVELYNCPNM------------TQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537 (876)
T ss_dssp TSCCCGGGCT-----------TCCEEEEESCTTC------------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred ChhhhhccCC-----------CCCEEECcCCCCC------------ccChHHHhCCCCCCEEECcCCCCcccccchHHH
Confidence 66654 554 3455577666554 3455677788888888888776 542 55544
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=9e-26 Score=264.72 Aligned_cols=318 Identities=16% Similarity=0.166 Sum_probs=199.1
Q ss_pred CCCCCCCchhhcCCCCCcEEEeeCCCCCC------------------CCcccc--CCCCCcEEEccCCCCC-Cc-ccccC
Q 048809 259 DHSLKIPDNFFTGMTELRVLDFTRMHLLA------------------LPSSLG--LLQNLQTLSLDYCELG-DM-AIIGD 316 (878)
Q Consensus 259 ~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~l~-~l-~~i~~ 316 (878)
|.+..+|.. |+++++|++|+|++|.++. +|..++ ++++|++|++++|.+. .+ ..+++
T Consensus 193 n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 344458876 5999999999999999988 999999 9999999999999965 33 78999
Q ss_pred cccCcEEEeeCCC-ccc--chHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcc--cccCCCCCC
Q 048809 317 LKKLVILALRGSD-MKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLH--ELNNLSKLT 391 (878)
Q Consensus 317 L~~L~~L~l~~~~-l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~L~ 391 (878)
+++|++|++++|. ++. +|..+++|..+. .+++|+.|++.+|.+. ..+. .++++++|+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~-----~l~~L~~L~L~~n~l~-------------~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAP-----VGEKIQIIYIGYNNLK-------------TFPVETSLQKMKKLG 333 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSG-----GGGTCCEEECCSSCCS-------------SCCCHHHHTTCTTCC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccc-----cCCCCCEEECCCCcCC-------------ccCchhhhccCCCCC
Confidence 9999999999997 885 999998874333 3367788899988765 2445 789999999
Q ss_pred EEEeecCCCC-CCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCC
Q 048809 392 SLEILIQDEK-TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLD 470 (878)
Q Consensus 392 ~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (878)
.|++++|... .+| .+..+++|+.|+++ ++..
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~-----------------------------------------------~N~l 365 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEIKLASLNLA-----------------------------------------------YNQI 365 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEEEESEEECC-----------------------------------------------SSEE
T ss_pred EEeCcCCcCccchh-hhCCCCCCCEEECC-----------------------------------------------CCcc
Confidence 9999999877 777 55555566655553 2221
Q ss_pred cccccccCcCCCCCC-CcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCcc-------ccC
Q 048809 471 MKSVLYGSDGEGFPQ-LKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAE-------SFC 542 (878)
Q Consensus 471 ~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~-------~l~ 542 (878)
. .+...+ ..+++ |++|+++++. +..++.. . ....+++|+.|+++++. +.... +..+. .++
T Consensus 366 ~-~lp~~l--~~l~~~L~~L~Ls~N~-l~~lp~~----~-~~~~l~~L~~L~Ls~N~-l~~~~--p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 366 T-EIPANF--CGFTEQVENLSFAHNK-LKYIPNI----F-DAKSVSVMSAIDFSYNE-IGSVD--GKNFDPLDPTPFKGI 433 (636)
T ss_dssp E-ECCTTS--EEECTTCCEEECCSSC-CSSCCSC----C-CTTCSSCEEEEECCSSC-TTTTT--TCSSCTTCSSCCCCC
T ss_pred c-cccHhh--hhhcccCcEEEccCCc-Ccccchh----h-hhcccCccCEEECcCCc-CCCcc--hhhhcccccccccCC
Confidence 1 111112 23555 6666666543 2222210 0 11223456666666542 22110 00111 456
Q ss_pred CccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecC
Q 048809 543 KVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCT 622 (878)
Q Consensus 543 ~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~ 622 (878)
+|+.|++.++ ++..+|. ..+..+++|++|+++++. +..++...... .......+++|+.|+++++ .++.++.
T Consensus 434 ~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~----~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 505 (636)
T 4eco_A 434 NVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNM-LTEIPKNSLKD----ENENFKNTYLLTSIDLRFN-KLTKLSD 505 (636)
T ss_dssp CEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSC-CSBCCSSSSEE----TTEECTTGGGCCEEECCSS-CCCBCCG
T ss_pred CCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCC-CCCcCHHHhcc----ccccccccCCccEEECcCC-cCCccCh
Confidence 7888888875 5666655 345567888888888764 33444322110 0000111336777777665 3445544
Q ss_pred CCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEeccc
Q 048809 623 GDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYD 669 (878)
Q Consensus 623 ~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~ 669 (878)
......+++|+.|++++| .++ +|..+.. +++|+.|++++|+
T Consensus 506 ~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~-----l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYN-SFSKFPTQPLN-----SSTLKGFGIRNQR 547 (636)
T ss_dssp GGSTTTCTTCCEEECCSS-CCSSCCCGGGG-----CSSCCEEECCSCB
T ss_pred hhhhccCCCcCEEECCCC-CCCCcChhhhc-----CCCCCEEECCCCc
Confidence 211125666666666663 344 5555443 6666666665554
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.9e-24 Score=242.97 Aligned_cols=343 Identities=17% Similarity=0.208 Sum_probs=252.1
Q ss_pred cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 305 (878)
+.++++|++.++.+..+|....+++|++|++++|.+..++. |.++++|++|++++|.+..++. ++++++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 56799999999999999876689999999999999998887 7999999999999999998887 99999999999999
Q ss_pred CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
|.++.++.++++++|++|++++|.+..+|. ++++.+|++| ++.++ +. ....+.
T Consensus 122 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L-----------~l~~~-~~--------------~~~~~~ 174 (466)
T 1o6v_A 122 NQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQL-----------SFGNQ-VT--------------DLKPLA 174 (466)
T ss_dssp SCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEE-----------EEEES-CC--------------CCGGGT
T ss_pred CCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEe-----------ecCCc-cc--------------Cchhhc
Confidence 999988779999999999999998888764 7766665555 44321 11 123366
Q ss_pred CCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEe
Q 048809 386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCL 465 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l 465 (878)
++++|+.|+++++....++. +..+++|+.|++..+...... ....+++|+.|++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-------------------------~~~~l~~L~~L~l 228 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDIT-------------------------PLGILTNLDELSL 228 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCG-------------------------GGGGCTTCCEEEC
T ss_pred cCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccc-------------------------cccccCCCCEEEC
Confidence 77777777777777666543 456677777776532211100 0124677888888
Q ss_pred cCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCcc
Q 048809 466 GGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVK 545 (878)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~ 545 (878)
+++... .+ +.+ ..+++|++|++.++. +..+. ....+++|+.|+++++ .++.+ .+...+++|+
T Consensus 229 ~~n~l~-~~-~~l--~~l~~L~~L~l~~n~-l~~~~--------~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~ 290 (466)
T 1o6v_A 229 NGNQLK-DI-GTL--ASLTNLTDLDLANNQ-ISNLA--------PLSGLTKLTELKLGAN-QISNI----SPLAGLTALT 290 (466)
T ss_dssp CSSCCC-CC-GGG--GGCTTCSEEECCSSC-CCCCG--------GGTTCTTCSEEECCSS-CCCCC----GGGTTCTTCS
T ss_pred CCCCcc-cc-hhh--hcCCCCCEEECCCCc-cccch--------hhhcCCCCCEEECCCC-ccCcc----ccccCCCccC
Confidence 776532 21 223 357889999998864 32221 3566888999999885 34433 1256789999
Q ss_pred EEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCc
Q 048809 546 DIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDL 625 (878)
Q Consensus 546 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~ 625 (878)
.|++.+| ++..+++ +..+++|+.|++++|.. ...+. ...+++|+.|++++| .++.++ .
T Consensus 291 ~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~~-------------~~~l~~L~~L~l~~n-~l~~~~---~ 348 (466)
T 1o6v_A 291 NLELNEN-QLEDISP---ISNLKNLTYLTLYFNNI-SDISP-------------VSSLTKLQRLFFYNN-KVSDVS---S 348 (466)
T ss_dssp EEECCSS-CCSCCGG---GGGCTTCSEEECCSSCC-SCCGG-------------GGGCTTCCEEECCSS-CCCCCG---G
T ss_pred eEEcCCC-cccCchh---hcCCCCCCEEECcCCcC-CCchh-------------hccCccCCEeECCCC-ccCCch---h
Confidence 9999986 5666655 46889999999999853 33322 124899999999997 455553 2
Q ss_pred ccccCCcceEEEecCCCccccccccccccccccceeEEEEecccc
Q 048809 626 HFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 626 ~~~~~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
...+++|+.|++++|..-..+. +.. +++|+.|++++|+.
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~----l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LAN----LTRITQLGLNDQAW 387 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTT----CTTCCEEECCCEEE
T ss_pred hccCCCCCEEeCCCCccCccch--hhc----CCCCCEEeccCCcc
Confidence 5678999999999975444332 344 89999999999985
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.3e-24 Score=252.28 Aligned_cols=451 Identities=15% Similarity=0.141 Sum_probs=243.5
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcccc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG 293 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~ 293 (878)
.....|. ..++++++|++++|.+..+++ .+ .+++|++|++++|.+..++.+.|..+++|++|+|++|.++.+|..
T Consensus 42 ~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-- 118 (562)
T 3a79_B 42 NLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-- 118 (562)
T ss_dssp CCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--
T ss_pred CCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--
Confidence 3444443 456899999999999999875 33 899999999999999999777789999999999999999999987
Q ss_pred CCCCCcEEEccCCCCCCc---ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCC--Cccc
Q 048809 294 LLQNLQTLSLDYCELGDM---AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPI--EWGK 368 (878)
Q Consensus 294 ~L~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~--~~~~ 368 (878)
.+++|++|++++|.++.+ ..++++++|++|++++|.++. ..++.+.+| +|+.|++.+|.+ .
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L---------~L~~L~L~~n~l~~~--- 184 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHL---------HLSCILLDLVSYHIK--- 184 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTS---------CEEEEEEEESSCCCC---
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhc---------eeeEEEeeccccccc---
Confidence 899999999999998753 689999999999999998875 234544433 347788888766 3
Q ss_pred cccccccccccCcccccCCCCCC--EEEeecCCCCC-CCc-chhcccCCceEEEEecccccccccchhhhhhhhhhhccC
Q 048809 369 VEGVDGERRNASLHELNNLSKLT--SLEILIQDEKT-LPR-DLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASG 444 (878)
Q Consensus 369 ~~~~~~~~~~~~~~~L~~l~~L~--~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~ 444 (878)
...+..+..+.. + .++++.+.... ++. .+..+++|+.+++..... .+..+....
T Consensus 185 ---------~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~-----~~~~l~~~~------- 242 (562)
T 3a79_B 185 ---------GGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE-----NCQRLMTFL------- 242 (562)
T ss_dssp ---------SSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST-----THHHHHHHH-------
T ss_pred ---------ccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEeccccccc-----ccchHHHHH-------
Confidence 122344444431 2 33455554332 222 222556666666653210 000000000
Q ss_pred CccccchhHHhhccccceEEecCcCCcccccccCc-CCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeecc
Q 048809 445 ANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSD-GEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLR 523 (878)
Q Consensus 445 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 523 (878)
.....+++++.|++.++.........+. ....++|++|++.++.-...++... .....++|+.|.+.
T Consensus 243 -------~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~-----~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 243 -------SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE-----FTYSETALKSLMIE 310 (562)
T ss_dssp -------HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC-----CCCCSCSCCEEEEE
T ss_pred -------HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh-----hhcccccchheehh
Confidence 0012245555565554432111110000 0113466777766653111111100 00001334444433
Q ss_pred cccccc-ceecCC-CCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccc
Q 048809 524 HLSNLE-KICRGP-LAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVI 601 (878)
Q Consensus 524 ~~~~L~-~~~~~~-~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 601 (878)
++..-. .++... ...-..++|+.|++.++. +...+ ....+++|++|+++++......+....
T Consensus 311 ~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~------------ 374 (562)
T 3a79_B 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCS------------ 374 (562)
T ss_dssp EEEECCCSSCHHHHHHHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCC------------
T ss_pred hcccceeecChhhhhhhhccCcceEEEccCCC-ccccc---CccCCCCceEEECCCCccccchhhhhc------------
Confidence 322110 000000 000011346666666653 22221 113556666666666543332332222
Q ss_pred cccccceeecccCCCcceecCC-CcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeec
Q 048809 602 ELTQLTTLELCSLPQLTSFCTG-DLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETV 679 (878)
Q Consensus 602 ~~~~L~~L~L~~c~~l~~~~~~-~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~ 679 (878)
.+++|+.|+++++ .++.++.. .....+++|++|++++|.--. +|...+.. +++|+.|++++|.. ++..
T Consensus 375 ~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~----l~~L~~L~l~~n~l-~~~~---- 444 (562)
T 3a79_B 375 TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW----AESILVLNLSSNML-TGSV---- 444 (562)
T ss_dssp SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC----CTTCCEEECCSSCC-CGGG----
T ss_pred ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC----cccCCEEECCCCCC-Ccch----
Confidence 2566666666664 33332210 012345666666666644333 55554444 56666666666653 0000
Q ss_pred cccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhcc
Q 048809 680 ENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVR 759 (878)
Q Consensus 680 ~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 759 (878)
+..+ .++|+.|++++| .++.+|..+..+++|+.|++++ ++++.++. ..+..+++
T Consensus 445 ---------------------~~~l--~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~~l~~ 498 (562)
T 3a79_B 445 ---------------------FRCL--PPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPD-GVFDRLTS 498 (562)
T ss_dssp ---------------------GSSC--CTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCT-TSTTTCTT
T ss_pred ---------------------hhhh--cCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCH-HHHhcCCC
Confidence 0111 145666666665 3455665555666666666665 45555432 23455666
Q ss_pred ceEEEEcccc
Q 048809 760 LKQMKIFHCK 769 (878)
Q Consensus 760 L~~L~i~~C~ 769 (878)
|+.|++++++
T Consensus 499 L~~L~l~~N~ 508 (562)
T 3a79_B 499 LQYIWLHDNP 508 (562)
T ss_dssp CCCEECCSCC
T ss_pred CCEEEecCCC
Confidence 6666666644
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.7e-23 Score=234.98 Aligned_cols=122 Identities=18% Similarity=0.284 Sum_probs=103.9
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR 326 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~ 326 (878)
.++++++|++.++.+..+|. +..+++|++|++++|.+..+|. ++.+++|++|++++|.++.+..++++++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECC
Confidence 46799999999999888886 6899999999999999999987 99999999999999999988559999999999999
Q ss_pred CCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeec
Q 048809 327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILI 397 (878)
Q Consensus 327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~ 397 (878)
+|.++.+|. +++++ +|+.|++.+|.+. .+..+..+++|+.|++++
T Consensus 121 ~n~l~~~~~-~~~l~-----------~L~~L~l~~n~l~--------------~~~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 121 NNQITDIDP-LKNLT-----------NLNRLELSSNTIS--------------DISALSGLTSLQQLSFGN 165 (466)
T ss_dssp SSCCCCCGG-GTTCT-----------TCSEEEEEEEEEC--------------CCGGGTTCTTCSEEEEEE
T ss_pred CCCCCCChH-HcCCC-----------CCCEEECCCCccC--------------CChhhccCCcccEeecCC
Confidence 999998876 65544 5566677777554 134588899999999964
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.6e-23 Score=234.68 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=129.6
Q ss_pred cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 305 (878)
+.++++|+++++.++.+|....+++|++|++++|.+..+| |+.+++|++|++++|.++.+| ++.+++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 6789999999999999885558999999999999888886 689999999999999998885 89999999999999
Q ss_pred CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
|.++.++ ++++++|++|++++|.++.+| ++++ ++|+.|++.+|... .. + .++
T Consensus 116 N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l-----------~~L~~L~l~~n~~~------------~~-~-~~~ 167 (457)
T 3bz5_A 116 NKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHN-----------TQLTELDCHLNKKI------------TK-L-DVT 167 (457)
T ss_dssp SCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTC-----------TTCCEEECTTCSCC------------CC-C-CCT
T ss_pred CcCCeec-CCCCCcCCEEECCCCccceec--cccC-----------CcCCEEECCCCCcc------------cc-c-ccc
Confidence 9988775 899999999999999888874 4443 45677788877432 01 1 467
Q ss_pred CCCCCCEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809 386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL 419 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 419 (878)
.+++|+.|++++|....+| +..+++|+.|++.
T Consensus 168 ~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITELD--VSQNKLLNRLNCD 199 (457)
T ss_dssp TCTTCCEEECCSSCCCCCC--CTTCTTCCEEECC
T ss_pred cCCcCCEEECCCCccceec--cccCCCCCEEECc
Confidence 8889999999999887776 4456666666553
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=4.6e-24 Score=238.90 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=33.4
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCC-------------cEEEccCCCCCCcc
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNL-------------QTLSLDYCELGDMA 312 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~l~~l~ 312 (878)
+..+||+|++++|.++.+|+++ +++++|++|++++|.+. .+|.+++++++| ++|++++|.++.++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCchhhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 3455556666655555555553 56666666666666553 456656555543 56666666555543
Q ss_pred cccCcccCcEEEeeCCCcccch
Q 048809 313 IIGDLKKLVILALRGSDMKELV 334 (878)
Q Consensus 313 ~i~~L~~L~~L~l~~~~l~~lp 334 (878)
.+ ..+|++|++++|.++.+|
T Consensus 88 ~~--~~~L~~L~l~~n~l~~lp 107 (454)
T 1jl5_A 88 EL--PPHLESLVASCNSLTELP 107 (454)
T ss_dssp SC--CTTCSEEECCSSCCSSCC
T ss_pred CC--cCCCCEEEccCCcCCccc
Confidence 32 245666666666555554
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.2e-23 Score=234.29 Aligned_cols=149 Identities=16% Similarity=0.308 Sum_probs=107.0
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CC-CccccCCCCCcEEEccCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-AL-PSSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~l-p~~i~~L~~L~~L~L~~~~ 307 (878)
+.++..++.++.+|. -.++|++|++++|.+..++...|.++++|++|++++|.+. .+ |..|..+++|++|+|++|.
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 456777777888887 2378888999888888876666788899999999988885 45 5668888899999999888
Q ss_pred CCCc--ccccCcccCcEEEeeCCCccc-chHh--hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKE-LVGE--IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLH 382 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (878)
++.+ ..++++++|++|++++|.++. .|.. ++++ ++|+.|++.+|.+. ...+.
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-----------~~L~~L~L~~n~l~------------~~~~~ 147 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-----------TSLEMLVLRDNNIK------------KIQPA 147 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC-----------TTCCEEECCSSBCC------------SCCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCc-----------ccCCEEECCCCccC------------ccCcc
Confidence 7754 678888899999998887765 3332 4433 34556677776654 11222
Q ss_pred c-ccCCCCCCEEEeecCCCCCC
Q 048809 383 E-LNNLSKLTSLEILIQDEKTL 403 (878)
Q Consensus 383 ~-L~~l~~L~~L~l~~~~~~~~ 403 (878)
. +.++++|+.|++++|.....
T Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp GGGGGCTTCCEEECTTCCBSCC
T ss_pred cccCCCCcccEEeCCCCccccc
Confidence 2 66777777777777765443
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.7e-23 Score=233.73 Aligned_cols=366 Identities=16% Similarity=0.210 Sum_probs=238.9
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCC-CCC-CCCCccEEEeecCCCC-CCCchhhcCCCCCcEEEeeCCCCCCC-Ccc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELP-QGF-ECPQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLLAL-PSS 291 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~-~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~ 291 (878)
.....|. .++++++|++++|.++.++ ..+ .+++|++|++++|.+. .++...|..+++|++|+|++|.+..+ |..
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence 4444554 6789999999999999874 444 8999999999999765 67777789999999999999999876 788
Q ss_pred ccCCCCCcEEEccCCCCCC--ccc--ccCcccCcEEEeeCCCcccc-hHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809 292 LGLLQNLQTLSLDYCELGD--MAI--IGDLKKLVILALRGSDMKEL-VGE-IGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 292 i~~L~~L~~L~L~~~~l~~--l~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
++++++|++|++++|.++. +.. ++++++|++|++++|.++.+ |.. +++++ +|+.|++.+|.+.
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-----------~L~~L~L~~n~l~ 167 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-----------RFHVLDLTFNKVK 167 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT-----------TCCEEECTTCCBS
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC-----------cccEEeCCCCccc
Confidence 9999999999999999886 443 99999999999999988876 444 55544 5667788888765
Q ss_pred ccccccccccccccCcccccCC--CCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhcc
Q 048809 366 WGKVEGVDGERRNASLHELNNL--SKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVAS 443 (878)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~L~~l--~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l 443 (878)
. .....+..+ .+|+.|+++++....++.........
T Consensus 168 ~------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~------------------------------ 205 (455)
T 3v47_A 168 S------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC------------------------------ 205 (455)
T ss_dssp C------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH------------------------------
T ss_pred c------------cChhhhhccccccccccccccCcccccchhhcccccc------------------------------
Confidence 1 222333333 57888998888776655321000000
Q ss_pred CCccccchhHHhhccccceEEecCcCCcccccccCcC-CCCCCCcEEEEccCCCceEEee------cccccccccCcccc
Q 048809 444 GANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDG-EGFPQLKRLEVVKNSNLLCVVD------TVDRATALTTAFPV 516 (878)
Q Consensus 444 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~------~~~~~~~~~~~~~~ 516 (878)
.....+++|++|+++++.........+.. ...++|+.|++.++........ ...... .....++
T Consensus 206 --------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 276 (455)
T 3v47_A 206 --------GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF-KGLEASG 276 (455)
T ss_dssp --------CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT-GGGTTSC
T ss_pred --------ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc-ccccccC
Confidence 00001233444444433221111110000 0124444444444322111000 000000 1122467
Q ss_pred cceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhh-hcccccccccC
Q 048809 517 LESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVI-FAAERGDESSN 595 (878)
Q Consensus 517 L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~ 595 (878)
|+.|+++++. +.... +..++.+++|+.|++.++ ++..+++. .+.++++|++|++++|.. ..+ +....
T Consensus 277 L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l-~~~~~~~~~------ 344 (455)
T 3v47_A 277 VKTCDLSKSK-IFALL--KSVFSHFTDLEQLTLAQN-EINKIDDN-AFWGLTHLLKLNLSQNFL-GSIDSRMFE------ 344 (455)
T ss_dssp CCEEECCSSC-CCEEC--TTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCC-CEECGGGGT------
T ss_pred ceEEEecCcc-ccccc--hhhcccCCCCCEEECCCC-cccccChh-HhcCcccCCEEECCCCcc-CCcChhHhc------
Confidence 8888888753 33331 223567888999999885 56666543 457789999999998754 333 32222
Q ss_pred CCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809 596 SNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 596 ~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
.+++|+.|+++++ .++.+... ....+++|++|++++| .++ +|...+.. +++|+.|++++|+.
T Consensus 345 ------~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~----l~~L~~L~l~~N~l 407 (455)
T 3v47_A 345 ------NLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDGIFDR----LTSLQKIWLHTNPW 407 (455)
T ss_dssp ------TCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTT----CTTCCEEECCSSCB
T ss_pred ------CcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHhHhcc----CCcccEEEccCCCc
Confidence 3899999999987 45555332 3457899999999994 566 88777776 99999999999997
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.6e-23 Score=234.52 Aligned_cols=115 Identities=16% Similarity=0.061 Sum_probs=57.4
Q ss_pred CCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCC-C-cccccCcccC-------------cEEEeeCCCcccchH
Q 048809 271 GMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELG-D-MAIIGDLKKL-------------VILALRGSDMKELVG 335 (878)
Q Consensus 271 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~-~-l~~i~~L~~L-------------~~L~l~~~~l~~lp~ 335 (878)
+..+||+|++++|.+..+|++|+++++|++|++++|.+. . +..++++++| ++|++++|.++.+|.
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 568999999999999999999999999999999999865 3 4778888875 778887777776665
Q ss_pred hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCce
Q 048809 336 EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQR 415 (878)
Q Consensus 336 ~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 415 (878)
. .++|+.|++++|.+.. .+. .+++|+.|++++|....+|.. .++|+.
T Consensus 89 ~--------------~~~L~~L~l~~n~l~~-------------lp~---~~~~L~~L~l~~n~l~~l~~~---~~~L~~ 135 (454)
T 1jl5_A 89 L--------------PPHLESLVASCNSLTE-------------LPE---LPQSLKSLLVDNNNLKALSDL---PPLLEY 135 (454)
T ss_dssp C--------------CTTCSEEECCSSCCSS-------------CCC---CCTTCCEEECCSSCCSCCCSC---CTTCCE
T ss_pred C--------------cCCCCEEEccCCcCCc-------------ccc---ccCCCcEEECCCCccCcccCC---CCCCCE
Confidence 1 2355666776665541 111 125677777777766655432 134555
Q ss_pred EEE
Q 048809 416 YRI 418 (878)
Q Consensus 416 L~l 418 (878)
|++
T Consensus 136 L~L 138 (454)
T 1jl5_A 136 LGV 138 (454)
T ss_dssp EEC
T ss_pred EEC
Confidence 444
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=8.7e-23 Score=228.75 Aligned_cols=120 Identities=21% Similarity=0.274 Sum_probs=99.5
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR 326 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~ 326 (878)
.+++|++|++++|.+..+| + |..+++|++|++++|.++.+| ++.+++|++|++++|.++.++ ++++++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECC
Confidence 5789999999999888887 3 689999999999999999886 899999999999999988774 8999999999999
Q ss_pred CCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCC
Q 048809 327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQD 399 (878)
Q Consensus 327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 399 (878)
+|.++.+| ++++ ++|+.|++.+|.+. . + .++.+++|+.|+++.|.
T Consensus 115 ~N~l~~l~--~~~l-----------~~L~~L~l~~N~l~------------~--l-~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 115 TNKLTKLD--VSQN-----------PLLTYLNCARNTLT------------E--I-DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp SSCCSCCC--CTTC-----------TTCCEEECTTSCCS------------C--C-CCTTCTTCCEEECTTCS
T ss_pred CCcCCeec--CCCC-----------CcCCEEECCCCccc------------e--e-ccccCCcCCEEECCCCC
Confidence 99888875 4443 45667788887765 1 1 36778888888888773
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.5e-22 Score=219.98 Aligned_cols=165 Identities=18% Similarity=0.281 Sum_probs=119.4
Q ss_pred ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809 225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD 304 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 304 (878)
.+++++++++.++.+..++....+++|++|++++|.+..++. |..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 467788999998888888775578888889888888888776 688888888888888888775 58888888888888
Q ss_pred CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
+|.++.++.+.++++|++|++++|.....+..++++ ++|+.|++.++.+. ....+
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l-----------~~L~~L~l~~~~~~--------------~~~~~ 173 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM-----------TGLNYLTVTESKVK--------------DVTPI 173 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTC-----------TTCCEEECCSSCCC--------------CCGGG
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhC-----------CCCcEEEecCCCcC--------------Cchhh
Confidence 888887766888888888888888333323334433 34556677766554 11226
Q ss_pred cCCCCCCEEEeecCCCCCCCcchhcccCCceEEE
Q 048809 385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRI 418 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 418 (878)
..+++|+.|+++++....++. +..+++|+.+++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 206 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTA 206 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred ccCCCCCEEEccCCccccccc-ccCCCccceeec
Confidence 677788888888777666554 334444444443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.6e-22 Score=226.03 Aligned_cols=314 Identities=18% Similarity=0.213 Sum_probs=216.3
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCC
Q 048809 229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 307 (878)
-+.++.+++.++.+|..+ .+++++|++++|.+..++...|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 357888888888888765 36899999999999888877789999999999999999876 7889999999999999999
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
++.+ ..++++++|++|++++|.+..++ ..++++. +|+.|++.+|.+. ......+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----------~L~~L~l~~n~l~------------~~~~~~~ 148 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-----------NLKSLEVGDNDLV------------YISHRAF 148 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-----------TCCEEEECCTTCC------------EECTTSS
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccc-----------cCCEEECCCCccc------------eeChhhc
Confidence 8876 45889999999999999887764 3455444 5566677777665 2234567
Q ss_pred cCCCCCCEEEeecCCCCCCCcc-hhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceE
Q 048809 385 NNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDL 463 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L 463 (878)
..+++|+.|++++|....++.. +..+++|+.|++
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l--------------------------------------------- 183 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL--------------------------------------------- 183 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE---------------------------------------------
T ss_pred cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC---------------------------------------------
Confidence 7888888888888877766643 223333333333
Q ss_pred EecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCC
Q 048809 464 CLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCK 543 (878)
Q Consensus 464 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~ 543 (878)
.++.... +. ......+++|++|++.++..+..++ .. .....+
T Consensus 184 --~~n~i~~-~~-~~~~~~l~~L~~L~l~~~~~~~~~~-------------------------------~~---~~~~~~ 225 (477)
T 2id5_A 184 --RHLNINA-IR-DYSFKRLYRLKVLEISHWPYLDTMT-------------------------------PN---CLYGLN 225 (477)
T ss_dssp --ESCCCCE-EC-TTCSCSCTTCCEEEEECCTTCCEEC-------------------------------TT---TTTTCC
T ss_pred --CCCcCcE-eC-hhhcccCcccceeeCCCCccccccC-------------------------------cc---cccCcc
Confidence 3222111 10 1111235566666665554333221 11 112336
Q ss_pred ccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCC
Q 048809 544 VKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTG 623 (878)
Q Consensus 544 L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~ 623 (878)
|+.|++.+| +++.++. ..+.++++|+.|+++++. +..++.. .+..+++|+.|+++++ .++.+...
T Consensus 226 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~L~~n-~l~~~~~~ 290 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGS-----------MLHELLRLQEIQLVGG-QLAVVEPY 290 (477)
T ss_dssp CSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTT-----------SCTTCTTCCEEECCSS-CCSEECTT
T ss_pred ccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChh-----------hccccccCCEEECCCC-ccceECHH
Confidence 777777775 5666653 245678888888888865 3333322 1223888999999886 45555432
Q ss_pred CcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809 624 DLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 624 ~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
....+++|+.|++++| .++ +|...+.. +++|+.|++++|+.
T Consensus 291 -~~~~l~~L~~L~L~~N-~l~~~~~~~~~~----l~~L~~L~l~~N~l 332 (477)
T 2id5_A 291 -AFRGLNYLRVLNVSGN-QLTTLEESVFHS----VGNLETLILDSNPL 332 (477)
T ss_dssp -TBTTCTTCCEEECCSS-CCSCCCGGGBSC----GGGCCEEECCSSCE
T ss_pred -HhcCcccCCEEECCCC-cCceeCHhHcCC----CcccCEEEccCCCc
Confidence 3457899999999995 566 88777777 89999999999986
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=8e-22 Score=214.12 Aligned_cols=303 Identities=16% Similarity=0.179 Sum_probs=193.9
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR 326 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~ 326 (878)
.+++|++|+++++.+..++. |..+++|++|++++|.+..+|. +..+++|++|++++|.++.++.++++++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc
Confidence 56677777777777777764 5777777777777777777766 77777777777777777777677777777777777
Q ss_pred CCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcc
Q 048809 327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRD 406 (878)
Q Consensus 327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 406 (878)
+|.+..+|. +.++ ++|+.|++.+|... ..+..+..+++|+.|+++++....++.
T Consensus 119 ~n~i~~~~~-~~~l-----------~~L~~L~l~~n~~~-------------~~~~~~~~l~~L~~L~l~~~~~~~~~~- 172 (347)
T 4fmz_A 119 EDNISDISP-LANL-----------TKMYSLNLGANHNL-------------SDLSPLSNMTGLNYLTVTESKVKDVTP- 172 (347)
T ss_dssp TSCCCCCGG-GTTC-----------TTCCEEECTTCTTC-------------CCCGGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCcccCchh-hccC-----------CceeEEECCCCCCc-------------ccccchhhCCCCcEEEecCCCcCCchh-
Confidence 777776665 4433 34555666666332 123346777777777777777666655
Q ss_pred hhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCC
Q 048809 407 LSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQL 486 (878)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 486 (878)
+..+++|+.|++..+..... .. ...+++|+.|++.++.... ..+ + ..+++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~------------------------~~-~~~l~~L~~L~l~~n~l~~-~~~-~--~~~~~L 223 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDI------------------------SP-LASLTSLHYFTAYVNQITD-ITP-V--ANMTRL 223 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCC------------------------GG-GGGCTTCCEEECCSSCCCC-CGG-G--GGCTTC
T ss_pred hccCCCCCEEEccCCccccc------------------------cc-ccCCCccceeecccCCCCC-Cch-h--hcCCcC
Confidence 55677777777643221110 00 2245677777777654322 111 2 346777
Q ss_pred cEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhh
Q 048809 487 KRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRG 566 (878)
Q Consensus 487 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~ 566 (878)
++|++.++. +..++ ....+++|+.|+++++ .++.+ .....+++|+.|++.+| ++..++ .+..
T Consensus 224 ~~L~l~~n~-l~~~~--------~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n-~l~~~~---~~~~ 285 (347)
T 4fmz_A 224 NSLKIGNNK-ITDLS--------PLANLSQLTWLEIGTN-QISDI----NAVKDLTKLKMLNVGSN-QISDIS---VLNN 285 (347)
T ss_dssp CEEECCSSC-CCCCG--------GGTTCTTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSS-CCCCCG---GGGG
T ss_pred CEEEccCCc-cCCCc--------chhcCCCCCEEECCCC-ccCCC----hhHhcCCCcCEEEccCC-ccCCCh---hhcC
Confidence 777777763 32221 3456777788887775 34433 23456778888888876 555553 3467
Q ss_pred ccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCC
Q 048809 567 LQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECP 641 (878)
Q Consensus 567 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~ 641 (878)
+++|++|++++|......+.... .+++|+.|++++|+ ++.++. ...+++|++|++++|+
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~------------~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIG------------GLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHH------------TCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CCCCCEEECcCCcCCCcChhHhh------------ccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 78888888888754433333222 37888888888875 555443 5578888888888764
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3.3e-22 Score=220.79 Aligned_cols=306 Identities=16% Similarity=0.224 Sum_probs=206.9
Q ss_pred CCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCc
Q 048809 245 GFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLV 321 (878)
Q Consensus 245 ~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~ 321 (878)
...++++++|++.++.+..+|..+|..+++|++|++++|.+..+| ..++.+++|++|++++|.++.+ ..++++++|+
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 345678888888888888888887788888888888888887765 4778888888888888887754 4578888888
Q ss_pred EEEeeCCCcccchHhh-cccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCC
Q 048809 322 ILALRGSDMKELVGEI-GQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDE 400 (878)
Q Consensus 322 ~L~l~~~~l~~lp~~i-~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 400 (878)
+|++++|.++.+|.++ ++++ +|+.|++.+|.+. ......++.+++|+.|++++|..
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~-----------~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTP-----------KLTTLSMSNNNLE------------RIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCC------------BCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEECCCCccCcCCHHHhcCCC-----------CCcEEECCCCccC------------ccChhhccCCCCCCEEECCCCcC
Confidence 8888888888777653 5443 4556677777654 22334567778888888888776
Q ss_pred CCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcC
Q 048809 401 KTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDG 480 (878)
Q Consensus 401 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 480 (878)
..++ +..+++|+ .|+++++... .+
T Consensus 178 ~~~~--~~~l~~L~-----------------------------------------------~L~l~~n~l~-----~~-- 201 (390)
T 3o6n_A 178 THVD--LSLIPSLF-----------------------------------------------HANVSYNLLS-----TL-- 201 (390)
T ss_dssp SBCC--GGGCTTCS-----------------------------------------------EEECCSSCCS-----EE--
T ss_pred Cccc--cccccccc-----------------------------------------------eeeccccccc-----cc--
Confidence 6543 22334444 4444332211 11
Q ss_pred CCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccc
Q 048809 481 EGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFP 560 (878)
Q Consensus 481 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 560 (878)
...++|++|++.++. +..+ ....+++|+.|+++++ .++.. ..+..+++|+.|++.++ .+..+++
T Consensus 202 ~~~~~L~~L~l~~n~-l~~~---------~~~~~~~L~~L~l~~n-~l~~~----~~l~~l~~L~~L~Ls~n-~l~~~~~ 265 (390)
T 3o6n_A 202 AIPIAVEELDASHNS-INVV---------RGPVNVELTILKLQHN-NLTDT----AWLLNYPGLVEVDLSYN-ELEKIMY 265 (390)
T ss_dssp ECCSSCSEEECCSSC-CCEE---------ECCCCSSCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCEEES
T ss_pred CCCCcceEEECCCCe-eeec---------cccccccccEEECCCC-CCccc----HHHcCCCCccEEECCCC-cCCCcCh
Confidence 123567777776653 3333 2233567777777764 33332 23567788888888885 5665544
Q ss_pred hhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecC
Q 048809 561 LVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILEC 640 (878)
Q Consensus 561 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C 640 (878)
. .+..+++|++|+++++. +..++.... .+++|+.|+++++ .++.++. ....+++|++|++++|
T Consensus 266 ~-~~~~l~~L~~L~L~~n~-l~~~~~~~~------------~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 266 H-PFVKMQRLERLYISNNR-LVALNLYGQ------------PIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHN 328 (390)
T ss_dssp G-GGTTCSSCCEEECCSSC-CCEEECSSS------------CCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSS
T ss_pred h-HccccccCCEEECCCCc-CcccCcccC------------CCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCC
Confidence 2 45778899999998864 445543332 3889999999987 5666654 2457899999999986
Q ss_pred CCcc-ccccccccccccccceeEEEEecccc
Q 048809 641 PQVK-FKSTIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 641 ~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
+ ++ +|. .. +++|+.|++++|+.
T Consensus 329 ~-i~~~~~---~~----~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 329 S-IVTLKL---ST----HHTLKNLTLSHNDW 351 (390)
T ss_dssp C-CCCCCC---CT----TCCCSEEECCSSCE
T ss_pred c-cceeCc---hh----hccCCEEEcCCCCc
Confidence 5 45 653 23 88999999999986
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.7e-21 Score=227.22 Aligned_cols=307 Identities=16% Similarity=0.217 Sum_probs=215.3
Q ss_pred CCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCc
Q 048809 245 GFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLV 321 (878)
Q Consensus 245 ~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~ 321 (878)
.+.+.+++.|++.++.+..+|..+|..+++|++|+|++|.+..+| ..|+.+++|++|+|++|.++.+ ..++++++|+
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 446788999999999888899888899999999999999998775 4889999999999999998765 4578999999
Q ss_pred EEEeeCCCcccchHhh-cccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCC
Q 048809 322 ILALRGSDMKELVGEI-GQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDE 400 (878)
Q Consensus 322 ~L~l~~~~l~~lp~~i-~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 400 (878)
+|++++|.++.+|..+ ++++ +|+.|++.+|.+. ...+..++.+++|+.|++++|..
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~-----------~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTP-----------KLTTLSMSNNNLE------------RIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCC------------BCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEEeeCCCCCCCCHHHhccCC-----------CCCEEEeeCCcCC------------CCChhhhhcCCcCcEEECcCCCC
Confidence 9999999888888763 5544 5566688877665 23345678888999999988876
Q ss_pred CCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcC
Q 048809 401 KTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDG 480 (878)
Q Consensus 401 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 480 (878)
..++. ..+++| +.|+++++... .+
T Consensus 184 ~~~~~--~~l~~L-----------------------------------------------~~L~l~~n~l~-----~l-- 207 (597)
T 3oja_B 184 THVDL--SLIPSL-----------------------------------------------FHANVSYNLLS-----TL-- 207 (597)
T ss_dssp SBCCG--GGCTTC-----------------------------------------------SEEECCSSCCS-----EE--
T ss_pred CCcCh--hhhhhh-----------------------------------------------hhhhcccCccc-----cc--
Confidence 65542 234444 44444433211 11
Q ss_pred CCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccc
Q 048809 481 EGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFP 560 (878)
Q Consensus 481 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 560 (878)
...++|++|+++++. +..++ ...+++|+.|+++++ .++.. ..+..+++|+.|++.++ .+..+++
T Consensus 208 ~~~~~L~~L~ls~n~-l~~~~---------~~~~~~L~~L~L~~n-~l~~~----~~l~~l~~L~~L~Ls~N-~l~~~~~ 271 (597)
T 3oja_B 208 AIPIAVEELDASHNS-INVVR---------GPVNVELTILKLQHN-NLTDT----AWLLNYPGLVEVDLSYN-ELEKIMY 271 (597)
T ss_dssp ECCTTCSEEECCSSC-CCEEE---------CSCCSCCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCEEES
T ss_pred cCCchhheeeccCCc-ccccc---------cccCCCCCEEECCCC-CCCCC----hhhccCCCCCEEECCCC-ccCCCCH
Confidence 124567777776653 33332 223467777777774 33322 33567888888888885 5665544
Q ss_pred hhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecC
Q 048809 561 LVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILEC 640 (878)
Q Consensus 561 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C 640 (878)
. .+.++++|+.|++++|. +..++.... .+++|+.|++++| .++.++. ....+++|+.|++++|
T Consensus 272 ~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~------------~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 272 H-PFVKMQRLERLYISNNR-LVALNLYGQ------------PIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHN 334 (597)
T ss_dssp G-GGTTCSSCCEEECTTSC-CCEEECSSS------------CCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSS
T ss_pred H-HhcCccCCCEEECCCCC-CCCCCcccc------------cCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCC
Confidence 2 45778889999988864 444544333 2889999999886 4556664 2467889999999986
Q ss_pred CCccccccccccccccccceeEEEEecccc
Q 048809 641 PQVKFKSTIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 641 ~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
.-..+|.. . +++|+.|++++|+.
T Consensus 335 ~l~~~~~~---~----~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 335 SIVTLKLS---T----HHTLKNLTLSHNDW 357 (597)
T ss_dssp CCCCCCCC---T----TCCCSEEECCSSCE
T ss_pred CCCCcChh---h----cCCCCEEEeeCCCC
Confidence 53336532 2 88999999999885
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.1e-21 Score=214.35 Aligned_cols=280 Identities=15% Similarity=0.157 Sum_probs=180.2
Q ss_pred ccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEE
Q 048809 225 VLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTL 301 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L 301 (878)
...+++++++.++.++.+|... .+++|++|++++|.+..++...|..+++|++|++++|.+..+| ..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 3578999999999999999865 7999999999999999998877899999999999999998875 558999999999
Q ss_pred EccCCCCCCc-c-cccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809 302 SLDYCELGDM-A-IIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN 378 (878)
Q Consensus 302 ~L~~~~l~~l-~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (878)
++++|.++.+ . .++++++|++|++++|.++.++.. +++++ +|+.|++.+|.+. .
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------~L~~L~l~~n~l~------------~ 179 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-----------SLQNLQLSSNRLT------------H 179 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-----------TCCEEECCSSCCS------------B
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC-----------CCCEEECCCCcCC------------c
Confidence 9999999876 3 369999999999999998887653 66554 5566677777665 1
Q ss_pred cCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhcc
Q 048809 379 ASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLK 458 (878)
Q Consensus 379 ~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~ 458 (878)
..+..+++|+.|+++++....++ ...+|+.|++..+...... . ..++
T Consensus 180 ---~~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~-----------------------~---~~~~ 226 (390)
T 3o6n_A 180 ---VDLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVR-----------------------G---PVNV 226 (390)
T ss_dssp ---CCGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEE-----------------------C---CCCS
T ss_pred ---cccccccccceeecccccccccC----CCCcceEEECCCCeeeecc-----------------------c---cccc
Confidence 13556778888888887655432 3345555555322110000 0 0124
Q ss_pred ccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCc
Q 048809 459 GIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAA 538 (878)
Q Consensus 459 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~ 538 (878)
+|+.|++.++.... . +.+ ..+++|++|+++++. +..+... ....+++|+.|+++++ .++.++. ..
T Consensus 227 ~L~~L~l~~n~l~~-~-~~l--~~l~~L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~---~~ 291 (390)
T 3o6n_A 227 ELTILKLQHNNLTD-T-AWL--LNYPGLVEVDLSYNE-LEKIMYH------PFVKMQRLERLYISNN-RLVALNL---YG 291 (390)
T ss_dssp SCCEEECCSSCCCC-C-GGG--GGCTTCSEEECCSSC-CCEEESG------GGTTCSSCCEEECCSS-CCCEEEC---SS
T ss_pred cccEEECCCCCCcc-c-HHH--cCCCCccEEECCCCc-CCCcChh------HccccccCCEEECCCC-cCcccCc---cc
Confidence 55555555543321 1 112 235566666665543 2222111 3344555555555552 3333311 12
Q ss_pred cccCCccEEEeecCCCcccccchhhhhhccCccEEEEecC
Q 048809 539 ESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGC 578 (878)
Q Consensus 539 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 578 (878)
..+++|+.|++.+| ++..+++ .+..+++|++|++++|
T Consensus 292 ~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 292 QPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHN 328 (390)
T ss_dssp SCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSS
T ss_pred CCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCC
Confidence 34555555555554 3444433 2344555555555554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=9e-21 Score=221.00 Aligned_cols=280 Identities=15% Similarity=0.140 Sum_probs=186.3
Q ss_pred cCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEEE
Q 048809 226 LKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTLS 302 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 302 (878)
..+++.+++.++.+..+|... .+++|++|++++|.+..++...|..+++|++|+|++|.+..+|. .|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 567899999999999998865 78999999999999999988778999999999999999988865 569999999999
Q ss_pred ccCCCCCCc-c-cccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCcccccccccccccc
Q 048809 303 LDYCELGDM-A-IIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNA 379 (878)
Q Consensus 303 L~~~~l~~l-~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 379 (878)
|++|.++.+ + .++++++|++|++++|.++.++. .+++++ +|+.|++.+|.+. .
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~------------~- 185 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-----------SLQNLQLSSNRLT------------H- 185 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-----------TCCEEECTTSCCS------------B-
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC-----------cCcEEECcCCCCC------------C-
Confidence 999998876 3 46999999999999999888765 466655 4556677777655 1
Q ss_pred CcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccc
Q 048809 380 SLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKG 459 (878)
Q Consensus 380 ~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~ 459 (878)
..++.+++|+.|++++|....++ ...+|+.|+++.+....... ...++
T Consensus 186 --~~~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~--------------------------~~~~~ 233 (597)
T 3oja_B 186 --VDLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRG--------------------------PVNVE 233 (597)
T ss_dssp --CCGGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEEC--------------------------SCCSC
T ss_pred --cChhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccccc--------------------------ccCCC
Confidence 12455677888888877654432 33455555553222110000 01245
Q ss_pred cceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCcc
Q 048809 460 IKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAE 539 (878)
Q Consensus 460 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~ 539 (878)
|+.|+++++.... .+.+ ..+++|++|+++++. +..+... ....+++|+.|+++++ .++.++. ...
T Consensus 234 L~~L~L~~n~l~~--~~~l--~~l~~L~~L~Ls~N~-l~~~~~~------~~~~l~~L~~L~Ls~N-~l~~l~~---~~~ 298 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWL--LNYPGLVEVDLSYNE-LEKIMYH------PFVKMQRLERLYISNN-RLVALNL---YGQ 298 (597)
T ss_dssp CCEEECCSSCCCC--CGGG--GGCTTCSEEECCSSC-CCEEESG------GGTTCSSCCEEECTTS-CCCEEEC---SSS
T ss_pred CCEEECCCCCCCC--Chhh--ccCCCCCEEECCCCc-cCCCCHH------HhcCccCCCEEECCCC-CCCCCCc---ccc
Confidence 6666666554322 1222 346677777776653 3332111 3445666666666663 3444421 234
Q ss_pred ccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCC
Q 048809 540 SFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQ 579 (878)
Q Consensus 540 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 579 (878)
.+++|+.|++.+| .+..+|. .+..+++|+.|++++|.
T Consensus 299 ~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 299 PIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC
T ss_pred cCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC
Confidence 4666666666664 4444443 23556666666666654
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=214.05 Aligned_cols=180 Identities=18% Similarity=0.285 Sum_probs=141.7
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-c
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-L 292 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i 292 (878)
.+...|. .++.++++|++++|.++.++. .+ .+++|++|++++|.+..++...|.++++|++|+|++|.+..+|.. +
T Consensus 22 ~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 22 RFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred CcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 3344443 467789999999999998864 33 899999999999999888777789999999999999999999865 7
Q ss_pred cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCcccc
Q 048809 293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKV 369 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~ 369 (878)
.++++|++|+|++|.++.+ ..+.++++|++|++++|.+..++. .++++ ++|+.|++.+|.+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~L~~L~l~~n~l~---- 165 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL-----------NSLEQLTLEKCNLT---- 165 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC-----------TTCCEEEEESCCCS----
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC-----------CCCCEEECCCCcCc----
Confidence 9999999999999998864 679999999999999998887653 45544 45677788888765
Q ss_pred ccccccccccCcccccCCCCCCEEEeecCCCCCCCc-chhcccCCceEEEE
Q 048809 370 EGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL 419 (878)
Q Consensus 370 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 419 (878)
......+..+++|+.|+++++....++. .+..+++|+.|++.
T Consensus 166 --------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 166 --------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp --------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred --------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 2234568889999999999998766543 23344445555443
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=2.2e-22 Score=235.56 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=28.7
Q ss_pred cCCccEEEEccCCCcc-cccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccc
Q 048809 707 ANNLEVLEIYGCDNLI-NLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCK 769 (878)
Q Consensus 707 l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 769 (878)
+++|++|++++|..-. .++.....+++|+.|++++|+ +++.....++..+++|+.|++++|+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 4555555555554211 112222344555555555554 4332223344455555555555554
No 43
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.85 E-value=3e-21 Score=246.55 Aligned_cols=182 Identities=21% Similarity=0.308 Sum_probs=152.4
Q ss_pred CCCcEEEEEeCChHHhhccCCCCccEEcCC-CChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809 1 MGGCKVLLTARSHDVLSSKMDCQKNIFVDV-LNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALK 79 (878)
Q Consensus 1 ~~gs~iivTtR~~~v~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~ 79 (878)
++|||||||||++.|+...++....+.+++ |+++|||+||+.+++. ..+.+.+++++|+++|+|+||||+++|++|+
T Consensus 255 ~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~ 332 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLR 332 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 479999999999999965467778899996 9999999999999953 2345667899999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHccCc----------chhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccH--HHHHHHH
Q 048809 80 NKSSLYVWKDALRQLKNKSL----------LGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNV--KDLLYHG 146 (878)
Q Consensus 80 ~~~~~~~w~~~l~~l~~~~~----------~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~--~~li~~w 146 (878)
.+. ..|++.++.+..... ...+..++.+||+.||+ ++|+||+|||+|| ++.| +.++.+|
T Consensus 333 ~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~------~~~~~~~~l~~f~~~~~i~~~~~~~~~ 404 (1249)
T 3sfz_A 333 DFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE------DIKDYYTDLSILQKDVKVPTKVLCVLW 404 (1249)
T ss_dssp HSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT------TTHHHHHHGGGSCTTCCEEHHHHHHHH
T ss_pred cCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH------HHHHHHHHhCccCCCCeeCHHHHHHHh
Confidence 874 469999998865431 12689999999999999 9999999999999 8888 8899999
Q ss_pred hhccCccCCCcHHHHHHHHHHHHHHHHhccccccccCC--cceehhHHHHHHHHHHHccc
Q 048809 147 MGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRS--EWFSMHDVVRDVAISIASRD 204 (878)
Q Consensus 147 ~~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~--~~~~mhdli~~~~~~~~~~e 204 (878)
.+++ +++ .+++++|+++||++..... ..|+|||++|++++..+.++
T Consensus 405 ~~~~--------~~~----~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 405 DLET--------EEV----EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TCCH--------HHH----HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCCH--------HHH----HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 7652 333 3589999999999865332 35999999999999987655
No 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.84 E-value=1.2e-21 Score=226.41 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=133.8
Q ss_pred CCcEEEEEeCChHHhhccCCCCccEEcC------CCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHH
Q 048809 2 GGCKVLLTARSHDVLSSKMDCQKNIFVD------VLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVA 75 (878)
Q Consensus 2 ~gs~iivTtR~~~v~~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g 75 (878)
+|||||||||++.|+.. +.....|+++ +|+++|||+||+++.+.. ..+++.+| |+|+||||+++|
T Consensus 264 pGSRILVTTRd~~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaG 334 (1221)
T 1vt4_I 264 LSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIA 334 (1221)
T ss_dssp SSCCEEEECSCSHHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHH
T ss_pred CCeEEEEeccChHHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHH
Confidence 69999999999999974 4444467777 999999999999997532 23344444 999999999999
Q ss_pred HHHhcCC-ChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHH-HHHHhhhcccC-CccH--HHHHHHHhhcc
Q 048809 76 KALKNKS-SLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEEL-RKTFLLIGYSY-IRNV--KDLLYHGMGLG 150 (878)
Q Consensus 76 ~~l~~~~-~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~-k~cf~~~~~fp-~~~~--~~li~~w~~~g 150 (878)
++|+.+. +.++|+.+ ....+..+|++||+.||+ +. |+||+|||+|| ++.| +.++.+|+++|
T Consensus 335 s~Lr~k~~s~eeW~~~--------~~~~I~aaLelSYd~Lp~------eelK~cFL~LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 335 ESIRDGLATWDNWKHV--------NCDKLTTIIESSLNVLEP------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp HHHHHSCSSHHHHHHC--------SCHHHHHHHHHHHHHSCT------THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred HHHhCCCCCHHHHhcC--------ChhHHHHHHHHHHHhCCH------HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence 9999884 66788753 235899999999999999 88 99999999999 8888 67899999987
Q ss_pred CccCCCcHHHHHHHHHHHHHHHHhccccccccCCcceehhHHHHHHHH
Q 048809 151 LFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAI 198 (878)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~mhdli~~~~~ 198 (878)
. +++. +++++|+++||++..+....|+|||++++++.
T Consensus 401 e-------edAe----~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 401 K-------SDVM----VVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp S-------HHHH----HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred H-------HHHH----HHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 1 2333 48999999999998656678999999998653
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=9.4e-22 Score=230.26 Aligned_cols=111 Identities=10% Similarity=0.086 Sum_probs=57.1
Q ss_pred ccCCccEEEEccCCC-ccc-ccCcc-cccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccc
Q 048809 706 HANNLEVLEIYGCDN-LIN-LVPSS-TSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEG 782 (878)
Q Consensus 706 ~l~~L~~L~l~~c~~-l~~-l~~~~-~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~ 782 (878)
.+++|++|+++.|.. ++. .+..+ ..+++|+.|++++| ++++.....++.++++|++|+|++|+ +++....
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~----- 506 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA----- 506 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH-----
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH-----
Confidence 356677777766553 211 11111 23667777777764 35443334455666777777777776 4322110
Q ss_pred cccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcC
Q 048809 783 DNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVED 830 (878)
Q Consensus 783 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~ 830 (878)
.....+++|+.|+|++|+ ++..... .....+|.+....+..
T Consensus 507 -----~~~~~l~~L~~L~ls~n~-it~~~~~-~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 507 -----AAVTKLPSLRYLWVQGYR-ASMTGQD-LMQMARPYWNIELIPS 547 (592)
T ss_dssp -----HHHHHCSSCCEEEEESCB-CCTTCTT-GGGGCCTTEEEEEECC
T ss_pred -----HHHHhcCccCeeECcCCc-CCHHHHH-HHHHhCCCcEEEEecC
Confidence 011236777777777776 5543222 1223456655544443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=8.1e-19 Score=188.75 Aligned_cols=155 Identities=16% Similarity=0.319 Sum_probs=122.8
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCC
Q 048809 228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYC 306 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~ 306 (878)
+++.++++++.++.+|..+ .+++++|++++|.+..++...|.++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 5788999999998888765 37899999999999999887789999999999999999877 788999999999999999
Q ss_pred CCCCc-ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 307 ELGDM-AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 307 ~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
.++.+ ..+. ++|++|++++|.++.++.. +++++ +|+.|++.+|.+.. .......+
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-----------~L~~L~l~~n~l~~----------~~~~~~~~ 167 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLN-----------QMIVVELGTNPLKS----------SGIENGAF 167 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT-----------TCCEEECCSSCCCG----------GGBCTTGG
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCc-----------cccEEECCCCcCCc----------cCcChhhc
Confidence 98866 4443 7899999999988887654 55444 55666887776541 11234567
Q ss_pred cCCCCCCEEEeecCCCCCCCcc
Q 048809 385 NNLSKLTSLEILIQDEKTLPRD 406 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~~ 406 (878)
..+++|+.|+++++....+|..
T Consensus 168 ~~l~~L~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITTIPQG 189 (330)
T ss_dssp GGCTTCCEEECCSSCCCSCCSS
T ss_pred cCCCCcCEEECCCCccccCCcc
Confidence 7788888888888877766654
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.5e-19 Score=194.69 Aligned_cols=154 Identities=17% Similarity=0.320 Sum_probs=109.5
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCC
Q 048809 228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYC 306 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~ 306 (878)
+++.++++++.++.+|..+ .++|++|++++|.+..++...|.++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4678888888888887765 36888888888888888766678888888888888888766 677888888888888888
Q ss_pred CCCCc-ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 307 ELGDM-AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 307 ~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
.++.+ ..+. ++|++|++++|.++.+|.. +++++ +|+.|++.+|.+... ...+..+
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-----------~L~~L~l~~n~l~~~----------~~~~~~~ 169 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR-----------NMNCIEMGGNPLENS----------GFEPGAF 169 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS-----------SCCEEECCSCCCBGG----------GSCTTSS
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCc-----------cCCEEECCCCccccC----------CCCcccc
Confidence 87765 4444 7888888888888777654 44433 455567777655310 1223444
Q ss_pred cCCCCCCEEEeecCCCCCCCcc
Q 048809 385 NNLSKLTSLEILIQDEKTLPRD 406 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~~ 406 (878)
..+ +|+.|+++++....+|..
T Consensus 170 ~~l-~L~~L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGIPKD 190 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSCCSS
T ss_pred cCC-ccCEEECcCCCCCccCcc
Confidence 555 677777777766655543
No 48
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=7.4e-21 Score=222.78 Aligned_cols=215 Identities=14% Similarity=0.133 Sum_probs=117.8
Q ss_pred ccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeeccc------
Q 048809 540 SFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCS------ 613 (878)
Q Consensus 540 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~------ 613 (878)
.+++|+.|++.+|. +........+.++++|++|++++|-.-..+.... ..+++|++|++.+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~------------~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA------------STCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH------------HHCTTCCEEEEECSCTTCS
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH------------HhCCCCCEEEEecCccccc
Confidence 46778888888776 5543222334577888888888762111111111 1267788887743
Q ss_pred --CCCcceecCCCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEe-----cccccccceeeecccccc
Q 048809 614 --LPQLTSFCTGDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIE-----GYDYDGEELFETVENGVN 684 (878)
Q Consensus 614 --c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~-----~c~~~~~~~~~~~~~~~~ 684 (878)
|..++..........+++|++|.+ +|+.++ .+..+... +++|+.|+++ +|..
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~-------------- 414 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARN----RPNMTRFRLCIIEPKAPDY-------------- 414 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHH----CTTCCEEEEEESSTTCCCT--------------
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhh----CCCcceeEeecccCCCccc--------------
Confidence 333333211111234788888844 556666 33333334 7888888888 4544
Q ss_pred ceeeccCCCCchhhhccccccccCCccEEEEccCCCcccc-cCccc-ccCCCcEEEecccCCceEeechhhhhhhccceE
Q 048809 685 AMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINL-VPSST-SFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQ 762 (878)
Q Consensus 685 l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~-~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 762 (878)
+...+.-..+ ...+..+++|+.|++++ .++.. +..+. .+++|+.|++++|. +++.....++.++++|++
T Consensus 415 -----l~~~~~~~~~-~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 415 -----LTLEPLDIGF-GAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp -----TTCCCTHHHH-HHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCE
T ss_pred -----ccCCchhhHH-HHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCE
Confidence 2221110011 01134467788888865 33221 12222 36778888887754 544433444466788888
Q ss_pred EEEccccccccccccccccccccccccccccccchhhccccCcc
Q 048809 763 MKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLES 806 (878)
Q Consensus 763 L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 806 (878)
|++++|+. ++.... .....+++|+.|++++|+.
T Consensus 486 L~L~~n~~-~~~~~~----------~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 486 LEIRDCPF-GDKALL----------ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEESCSC-CHHHHH----------HTGGGGGGSSEEEEESSCC
T ss_pred EECcCCCC-cHHHHH----------HHHHhCCCCCEEeeeCCCC
Confidence 88888764 322110 0122367888888888865
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=3.6e-19 Score=190.61 Aligned_cols=86 Identities=22% Similarity=0.342 Sum_probs=43.8
Q ss_pred CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-ccccCcccCcEEEeeCC
Q 048809 250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGS 328 (878)
Q Consensus 250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~ 328 (878)
++++|++++|.+..+|..+ .++++|++|+|++|.+..+|..++.+++|++|+|++|.++.+ ..++++++|++|++++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred ceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 4444444444444444443 335555555555555555555555555555555555555443 44555555555555554
Q ss_pred -CcccchHh
Q 048809 329 -DMKELVGE 336 (878)
Q Consensus 329 -~l~~lp~~ 336 (878)
.+..+|..
T Consensus 161 ~~~~~~p~~ 169 (328)
T 4fcg_A 161 PELTELPEP 169 (328)
T ss_dssp TTCCCCCSC
T ss_pred CCccccChh
Confidence 33344443
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=3.7e-19 Score=190.55 Aligned_cols=108 Identities=24% Similarity=0.405 Sum_probs=77.5
Q ss_pred CCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809 227 KDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305 (878)
Q Consensus 227 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 305 (878)
.+++.|+++++.++.+|..+ .+++|++|++++|.+..+|.. |+++++|++|+|++|.+..+|..++.+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 56788888888888887766 678888888888877777765 4788888888888888888888888888888888888
Q ss_pred CC-CCCc-cccc---------CcccCcEEEeeCCCcccchH
Q 048809 306 CE-LGDM-AIIG---------DLKKLVILALRGSDMKELVG 335 (878)
Q Consensus 306 ~~-l~~l-~~i~---------~L~~L~~L~l~~~~l~~lp~ 335 (878)
|. +..+ ..++ ++++|++|++++|.++.+|.
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~ 200 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH
Confidence 76 3333 4333 35666666666555544443
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1e-17 Score=180.14 Aligned_cols=167 Identities=21% Similarity=0.335 Sum_probs=127.4
Q ss_pred cccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809 224 DVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL 301 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 301 (878)
..++++++|++++|.++.++.. + .+++|++|++++|.+..++...|..+++|++|++++|.++.+|..+. ++|++|
T Consensus 49 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQEL 126 (330)
T ss_dssp SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEE
Confidence 3567899999999999998763 3 89999999999999998866667999999999999999999998876 799999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEeeCCCccc---chHhhcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809 302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKE---LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER 376 (878)
Q Consensus 302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 376 (878)
++++|.++.+ ..++++++|++|++++|.+.. .+..+++++ +|+.|++.+|.+..
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-----------~L~~L~l~~n~l~~---------- 185 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-----------KLSYIRIADTNITT---------- 185 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-----------TCCEEECCSSCCCS----------
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-----------CcCEEECCCCcccc----------
Confidence 9999998876 568999999999999997763 344555544 45566777665541
Q ss_pred cccCcccccCCCCCCEEEeecCCCCCC-CcchhcccCCceEEE
Q 048809 377 RNASLHELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRI 418 (878)
Q Consensus 377 ~~~~~~~L~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l 418 (878)
.+..+ .++|+.|++++|....+ |..+..+++|+.|++
T Consensus 186 ---l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 186 ---IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp ---CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred ---CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 11111 15778888887776554 344444555555554
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=8.4e-18 Score=180.89 Aligned_cols=166 Identities=22% Similarity=0.369 Sum_probs=124.3
Q ss_pred cccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809 224 DVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL 301 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 301 (878)
.++++++.|++++|.++.+++ .+ .+++|++|++++|.+..++...|.++++|++|++++|.+..+|..+. ++|++|
T Consensus 51 ~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 51 EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence 356789999999999998865 33 89999999999999999877778999999999999999999998877 899999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEeeCCCccc---chHhhcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809 302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKE---LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER 376 (878)
Q Consensus 302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 376 (878)
++++|.++.+ ..++++++|++|++++|.++. .|..++.+ + |+.|++.+|.+..
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~-----------L~~L~l~~n~l~~---------- 186 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K-----------LNYLRISEAKLTG---------- 186 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C-----------CSCCBCCSSBCSS----------
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c-----------cCEEECcCCCCCc----------
Confidence 9999999876 458999999999999998763 34445444 4 4455666665441
Q ss_pred cccCcccccCCCCCCEEEeecCCCCCCC-cchhcccCCceEEE
Q 048809 377 RNASLHELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRI 418 (878)
Q Consensus 377 ~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l 418 (878)
.+..+. ++|+.|++++|....++ ..+..+++|+.|++
T Consensus 187 ---l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 187 ---IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp ---CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred ---cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 111221 46777777777666554 33334444444433
No 53
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=201.13 Aligned_cols=177 Identities=21% Similarity=0.313 Sum_probs=142.5
Q ss_pred CCCcEEEEEeCChHHhhccCCCCccEEc---CCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHH
Q 048809 1 MGGCKVLLTARSHDVLSSKMDCQKNIFV---DVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKA 77 (878)
Q Consensus 1 ~~gs~iivTtR~~~v~~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~ 77 (878)
++|++||||||+..++.. ++ ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+.+|+.
T Consensus 255 ~~~~~ilvTsR~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~ 330 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGAL 330 (591)
T ss_dssp CSSCEEEEEESCGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCeEEEECCCcHHHHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHH
Confidence 479999999999999884 43 234554 5899999999999999642 2344578899999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHccCc----------chhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccH--HHHHH
Q 048809 78 LKNKSSLYVWKDALRQLKNKSL----------LGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNV--KDLLY 144 (878)
Q Consensus 78 l~~~~~~~~w~~~l~~l~~~~~----------~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~--~~li~ 144 (878)
++.+. ..|+.+++.+..... ...+..++.+||+.||+ +.|.||+++|+|| ++.| +.++.
T Consensus 331 l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~------~~~~~l~~la~f~~~~~i~~~~l~~ 402 (591)
T 1z6t_A 331 LRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE------DIKDYYTDLSILQKDVKVPTKVLCI 402 (591)
T ss_dssp HHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT------TTHHHHHHGGGCCTTCCEEHHHHHH
T ss_pred HhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH------HHHHHHHHccccCCCCccCHHHHHH
Confidence 99873 369999988875421 13788999999999999 9999999999999 8877 67778
Q ss_pred HHhhccCccCCCcHHHHHHHHHHHHHHHHhcccccccc--CCcceehhHHHHHHHHHHH
Q 048809 145 HGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGW--RSEWFSMHDVVRDVAISIA 201 (878)
Q Consensus 145 ~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~--~~~~~~mhdli~~~~~~~~ 201 (878)
.|.+. .+++ .+++++|++++|++... ....|+||+++|+++....
T Consensus 403 l~~~~--------~~~~----~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 403 LWDME--------TEEV----EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHTCC--------HHHH----HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HhccC--------HHHH----HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 88643 2333 34899999999998542 3347999999999998773
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=4.1e-17 Score=188.08 Aligned_cols=260 Identities=18% Similarity=0.117 Sum_probs=157.1
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCC
Q 048809 228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 307 (878)
+++.|+++++.++.+|..+. ++|++|++++|.+..+|. .+++|++|+|++|.++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 35677777777777766554 677777777777777765 45677777777777777766 56777777777777
Q ss_pred CCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCC
Q 048809 308 LGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNL 387 (878)
Q Consensus 308 l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l 387 (878)
++.++. .+.+|++|++++|.++.+|.. +++|+.|++++|.+.. .+. .+
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~--------------l~~L~~L~Ls~N~l~~-------------l~~---~~ 160 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL--------------PPGLQELSVSDNQLAS-------------LPA---LP 160 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC--------------CTTCCEEECCSSCCSC-------------CCC---CC
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC--------------CCCCCEEECcCCcCCC-------------cCC---cc
Confidence 766643 566777777777776666642 2345556666665440 011 23
Q ss_pred CCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecC
Q 048809 388 SKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGG 467 (878)
Q Consensus 388 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~ 467 (878)
.+|+.|++++|....+|. .+++|+.|+++.+.... ++..+++|+.|.+.+
T Consensus 161 ~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~l~~---------------------------l~~~~~~L~~L~L~~ 210 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLPM---LPSGLQELSVSDNQLAS---------------------------LPTLPSELYKLWAYN 210 (622)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC---------------------------CCCCCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCCCcc---cCCCCcEEECCCCCCCC---------------------------CCCccchhhEEECcC
Confidence 456666666666666662 44556665553221110 001235666777665
Q ss_pred cCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEE
Q 048809 468 SLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDI 547 (878)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L 547 (878)
+... . ++ ..+++|++|+++++ .++.+ . ..+++|+.|+++++ .++.++. .+++|+.|
T Consensus 211 N~l~-~-l~----~~~~~L~~L~Ls~N-~L~~l---------p-~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L 266 (622)
T 3g06_A 211 NRLT-S-LP----ALPSGLKELIVSGN-RLTSL---------P-VLPSELKELMVSGN-RLTSLPM------LPSGLLSL 266 (622)
T ss_dssp SCCS-S-CC----CCCTTCCEEECCSS-CCSCC---------C-CCCTTCCEEECCSS-CCSCCCC------CCTTCCEE
T ss_pred Cccc-c-cC----CCCCCCCEEEccCC-ccCcC---------C-CCCCcCcEEECCCC-CCCcCCc------ccccCcEE
Confidence 5322 1 11 22577888888765 33332 1 34577788888774 4554422 46778888
Q ss_pred EeecCCCcccccchhhhhhccCccEEEEecCCcchhh
Q 048809 548 RVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVI 584 (878)
Q Consensus 548 ~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 584 (878)
++.+| +++.+|. .+.++++|+.|++++++.....
T Consensus 267 ~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 267 SVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp ECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCCHHH
T ss_pred eCCCC-CCCcCCH--HHhhccccCEEEecCCCCCCcC
Confidence 88775 6666654 4567788888888877644433
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=2.6e-18 Score=182.76 Aligned_cols=169 Identities=19% Similarity=0.316 Sum_probs=132.4
Q ss_pred CCCcEEEeeCCCCC---CCCCCC-CCCCccEEEeec-CCCC-CCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCc
Q 048809 227 KDCTAISLNNSNIN---ELPQGF-ECPQLKYFRIHN-DHSL-KIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQ 299 (878)
Q Consensus 227 ~~lr~l~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~ 299 (878)
.++++|+++++.+. .+|..+ .+++|++|++++ |.+. .+|.. |.++++|++|++++|.+. .+|..++.+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57899999999988 477766 899999999995 6544 66766 599999999999999997 7899999999999
Q ss_pred EEEccCCCCC-Cc-ccccCcccCcEEEeeCCCcc-cchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809 300 TLSLDYCELG-DM-AIIGDLKKLVILALRGSDMK-ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER 376 (878)
Q Consensus 300 ~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 376 (878)
+|++++|.++ .+ ..++++++|++|++++|.++ .+|..++++. .+|+.|++.+|.+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~----------~~L~~L~L~~N~l~----------- 187 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS----------KLFTSMTISRNRLT----------- 187 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC----------TTCCEEECCSSEEE-----------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh----------hcCcEEECcCCeee-----------
Confidence 9999999987 44 78999999999999999988 7888888665 14566677777654
Q ss_pred cccCcccccCCCCCCEEEeecCCCC-CCCcchhcccCCceEEEE
Q 048809 377 RNASLHELNNLSKLTSLEILIQDEK-TLPRDLSFFKMLQRYRIL 419 (878)
Q Consensus 377 ~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 419 (878)
+..+..+..++ |+.|++++|... ..|..+..+++|+.|++.
T Consensus 188 -~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 188 -GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp -EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred -ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 23455666665 888888888754 334444455555555553
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.1e-19 Score=212.85 Aligned_cols=233 Identities=14% Similarity=0.118 Sum_probs=128.0
Q ss_pred CCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeec--------CCC
Q 048809 483 FPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEW--------CDK 554 (878)
Q Consensus 483 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~--------c~~ 554 (878)
+++|++|++.+|. +... .... ....+++|+.|++.+|..-..+ ......+++|+.|++.+ |..
T Consensus 288 ~~~L~~L~L~~~~-l~~~----~l~~-~~~~~~~L~~L~l~~~~~~~~l---~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSY----DLVK-LLCQCPKLQRLWVLDYIEDAGL---EVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp HTTCCEEECTTCC-CCHH----HHHH-HHTTCTTCCEEEEEGGGHHHHH---HHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hCCCCEEEccCCC-CCHH----HHHH-HHhcCCCcCEEeCcCccCHHHH---HHHHHhCCCCCEEEEecCcccccccCCC
Confidence 5677777776665 2210 0000 2345677777777765211111 00112467777777743 445
Q ss_pred cccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecc-----cCCCcceecCC----Cc
Q 048809 555 LKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELC-----SLPQLTSFCTG----DL 625 (878)
Q Consensus 555 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~-----~c~~l~~~~~~----~~ 625 (878)
++.........++++|+.|.+. |..+......... ..+++|+.|++. +|..++..+.. ..
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~----------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l 427 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIA----------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHH----------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred CCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHH----------hhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence 5443332233457888888554 4444433221110 137788888887 56666643321 11
Q ss_pred ccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhcccc
Q 048809 626 HFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQE 703 (878)
Q Consensus 626 ~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~ 703 (878)
...+++|++|++++ .++ .+..+... +++|+.|++++|.. ++..+ .. .
T Consensus 428 ~~~~~~L~~L~L~~--~l~~~~~~~l~~~----~~~L~~L~L~~~~i-~~~~~--------------------~~----l 476 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG--LLTDKVFEYIGTY----AKKMEMLSVAFAGD-SDLGM--------------------HH----V 476 (594)
T ss_dssp HHHCTTCCEEECCS--SCCHHHHHHHHHH----CTTCCEEEEESCCS-SHHHH--------------------HH----H
T ss_pred HhhCCCccEEeecC--cccHHHHHHHHHh----chhccEeeccCCCC-cHHHH--------------------HH----H
Confidence 34678888888865 555 33333334 78899999988864 11111 00 1
Q ss_pred ccccCCccEEEEccCCCcccccC-cccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcc
Q 048809 704 SSHANNLEVLEIYGCDNLINLVP-SSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFH 767 (878)
Q Consensus 704 ~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 767 (878)
...+++|++|++++|+.....+. ....+++|+.|++++|+. +.-....+...+++|+...+..
T Consensus 477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence 13368899999999886322222 334578999999999865 3222233445667776655543
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=180.32 Aligned_cols=113 Identities=11% Similarity=0.144 Sum_probs=61.2
Q ss_pred ccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCC---
Q 048809 540 SFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQ--- 616 (878)
Q Consensus 540 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~--- 616 (878)
.+++|+.|++.++ ++..++. .....+++|++|+++++. +...+..... .....+.++.++++++.-
T Consensus 196 ~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~L~~L~L~~n~-l~~~~~~~l~--------~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 196 SIQNVSHLILHMK-QHILLLE-IFVDVTSSVECLELRDTD-LDTFHFSELS--------TGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCSEEEEEEEECS-CSTTHHH-HHHHHTTTEEEEEEESCB-CTTCCCC--------------CCCCCCEEEEESCBCCHH
T ss_pred ccccCCeecCCCC-ccccchh-hhhhhcccccEEECCCCc-cccccccccc--------cccccchhhccccccccccCc
Confidence 3445555555553 2333332 123445666666666643 2222111100 011244455555555321
Q ss_pred -cceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809 617 -LTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY 670 (878)
Q Consensus 617 -l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~ 670 (878)
+..++. ....+++|++|++++| .++ +|..++.. +++|+.|++++|+.
T Consensus 265 ~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~----l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 265 SLFQVMK--LLNQISGLLELEFSRN-QLKSVPDGIFDR----LTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHHH--HHHTCTTCCEEECCSS-CCCCCCTTTTTT----CTTCCEEECCSSCB
T ss_pred chhhhHH--HHhcccCCCEEECCCC-CCCccCHHHHhc----CCCCCEEEeeCCCc
Confidence 112222 2346789999999985 566 88877666 89999999999987
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.1e-19 Score=205.72 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=41.9
Q ss_pred CccEEEeecCCCCCCC-chhhcCCCCCcEEEeeCCCCC-----CCCccccCCCCCcEEEccCCCCCC--cccc-cCcc--
Q 048809 250 QLKYFRIHNDHSLKIP-DNFFTGMTELRVLDFTRMHLL-----ALPSSLGLLQNLQTLSLDYCELGD--MAII-GDLK-- 318 (878)
Q Consensus 250 ~Lr~L~l~~~~~~~l~-~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--l~~i-~~L~-- 318 (878)
+|++|+++++.+...+ ..+|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.. +..+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4555555555443332 222455566666666666554 344555555666666666665543 1222 2233
Q ss_pred --cCcEEEeeCCCcc
Q 048809 319 --KLVILALRGSDMK 331 (878)
Q Consensus 319 --~L~~L~l~~~~l~ 331 (878)
+|++|++++|.++
T Consensus 84 ~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLT 98 (461)
T ss_dssp TCCCCEEECTTSCCB
T ss_pred CCceeEEEccCCCCC
Confidence 4666666666554
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=9.2e-18 Score=178.57 Aligned_cols=129 Identities=18% Similarity=0.258 Sum_probs=102.4
Q ss_pred CCccEEEeecCCCC---CCCchhhcCCCCCcEEEeeC-CCCC-CCCccccCCCCCcEEEccCCCCC-Cc-ccccCcccCc
Q 048809 249 PQLKYFRIHNDHSL---KIPDNFFTGMTELRVLDFTR-MHLL-ALPSSLGLLQNLQTLSLDYCELG-DM-AIIGDLKKLV 321 (878)
Q Consensus 249 ~~Lr~L~l~~~~~~---~l~~~~~~~l~~Lr~L~Ls~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~l-~~i~~L~~L~ 321 (878)
.++++|+++++.+. .+|.. |.++++|++|++++ |.+. .+|..|+++++|++|++++|.++ .+ ..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 58999999999776 47765 59999999999995 8775 78999999999999999999987 34 7799999999
Q ss_pred EEEeeCCCcc-cchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCC-CCCEEEeecCC
Q 048809 322 ILALRGSDMK-ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLS-KLTSLEILIQD 399 (878)
Q Consensus 322 ~L~l~~~~l~-~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~L~~L~l~~~~ 399 (878)
+|++++|.++ .+|..+++++ +|+.|++.+|.+. +..+..+..+. +|+.|++++|.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~-----------~L~~L~L~~N~l~------------~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLP-----------NLVGITFDGNRIS------------GAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCT-----------TCCEEECCSSCCE------------EECCGGGGCCCTTCCEEECCSSE
T ss_pred EEeCCCCccCCcCChHHhcCC-----------CCCeEECcCCccc------------CcCCHHHhhhhhcCcEEECcCCe
Confidence 9999999887 5777777555 4555677777654 23456677776 78888887775
Q ss_pred CC
Q 048809 400 EK 401 (878)
Q Consensus 400 ~~ 401 (878)
..
T Consensus 186 l~ 187 (313)
T 1ogq_A 186 LT 187 (313)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.8e-17 Score=174.10 Aligned_cols=173 Identities=23% Similarity=0.388 Sum_probs=123.8
Q ss_pred cccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCC-CCCC-CccccCCCCCc
Q 048809 224 DVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMH-LLAL-PSSLGLLQNLQ 299 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~-i~~l-p~~i~~L~~L~ 299 (878)
..+.++++|++++|.++.++.. + .+++|++|++++|.+..++...|..+++|++|++++|. +..+ |..+..+++|+
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 4567899999999999887753 3 78899999999998888866667899999999999997 7777 67788999999
Q ss_pred EEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809 300 TLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER 376 (878)
Q Consensus 300 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 376 (878)
+|++++|.++.+ ..++++++|++|++++|.++.+|.. ++++++|++| ++.+|.+.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-----------~l~~n~l~----------- 166 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL-----------FLHGNRIS----------- 166 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-----------ECCSSCCC-----------
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE-----------ECCCCccc-----------
Confidence 999999998765 5688899999999999988887765 6666655554 55544433
Q ss_pred cccCcccccCCCCCCEEEeecCCCCCC-CcchhcccCCceEEEE
Q 048809 377 RNASLHELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRIL 419 (878)
Q Consensus 377 ~~~~~~~L~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~ 419 (878)
......+..+++|+.|++++|....+ |..+..+++|+.|++.
T Consensus 167 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 167 -SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp -EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred -ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 11112344455555555555554433 3344445555555543
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=2.3e-17 Score=175.32 Aligned_cols=170 Identities=21% Similarity=0.297 Sum_probs=86.1
Q ss_pred cCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCC---CchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcE
Q 048809 226 LKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKI---PDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQT 300 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l---~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~ 300 (878)
+.++++|++++|.++.+|... .+++|++|++++|.+..+ +.. +..+++|++|++++|.+..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 445555555555555555432 555555555555544433 222 24455555555555555555555555555555
Q ss_pred EEccCCCCCCc---ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809 301 LSLDYCELGDM---AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER 376 (878)
Q Consensus 301 L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 376 (878)
|++++|.++.+ ..+.++++|++|++++|.+...+ ..+++ +++|+.|++.+|.+..
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------l~~L~~L~l~~n~l~~---------- 164 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----------LSSLEVLKMAGNSFQE---------- 164 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-----------CTTCCEEECTTCEEGG----------
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-----------CcCCCEEECCCCcccc----------
Confidence 55555554433 24555555555555555544332 22332 3344555665554430
Q ss_pred cccCcccccCCCCCCEEEeecCCCCCC-CcchhcccCCceEEE
Q 048809 377 RNASLHELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRI 418 (878)
Q Consensus 377 ~~~~~~~L~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l 418 (878)
...+..+..+++|+.|++++|....+ |..+..+++|+.|++
T Consensus 165 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 165 -NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp -GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 01234455666666666666655444 333333444444443
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2.3e-16 Score=181.78 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=94.0
Q ss_pred CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCC
Q 048809 249 PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGS 328 (878)
Q Consensus 249 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~ 328 (878)
.++++|+++++.+..+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++.++. .+.+|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 368999999999999998753 799999999999999988 57899999999999888755 7899999999999
Q ss_pred CcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCc
Q 048809 329 DMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPR 405 (878)
Q Consensus 329 ~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 405 (878)
.++.+|. .+++|+.|++.+|.+.. .+. .+++|++|++++|....+|.
T Consensus 112 ~l~~l~~--------------~l~~L~~L~L~~N~l~~-------------lp~---~l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 112 PLTHLPA--------------LPSGLCKLWIFGNQLTS-------------LPV---LPPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp CCCCCCC--------------CCTTCCEEECCSSCCSC-------------CCC---CCTTCCEEECCSSCCSCCCC
T ss_pred cCCCCCC--------------CCCCcCEEECCCCCCCc-------------CCC---CCCCCCEEECcCCcCCCcCC
Confidence 8888776 23456777888776651 111 23678888888887766654
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=179.37 Aligned_cols=241 Identities=21% Similarity=0.272 Sum_probs=125.1
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l 308 (878)
+.++..+..++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.+..++ ..|..+++|++|+|++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 455555556666665442 46666666666666665555566666666666666665553 4556666666666666666
Q ss_pred CCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 309 GDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
+.+ ..+..+++|++|++++|.++.+|. .+.++++ |+.|++.++... .......+.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-----------L~~L~l~~~~~l-----------~~i~~~~~~ 182 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS-----------LRRLDLGELKRL-----------SYISEGAFE 182 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT-----------CCEEECCCCTTC-----------CEECTTTTT
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc-----------cCEeCCCCCCCc-----------ceeCcchhh
Confidence 554 346666666666666666665554 2443333 333344432111 001122344
Q ss_pred CCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEe
Q 048809 386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCL 465 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l 465 (878)
++++|+.|++++|....+|. +..+++|+.|+++.+.... ........+++|++|++
T Consensus 183 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSA-----------------------IRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp TCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEEC
T ss_pred cccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCc-----------------------cChhhhccCccCCEEEC
Confidence 45555555555555554442 3344555555543211100 00111123566666766
Q ss_pred cCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccc
Q 048809 466 GGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLS 526 (878)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 526 (878)
.++.........+ ..+++|++|+++++ .+..++.. ....+++|+.|++++.+
T Consensus 239 ~~n~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~------~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 239 IQSQIQVIERNAF--DNLQSLVEINLAHN-NLTLLPHD------LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCCCCEECTTSS--TTCTTCCEEECTTS-CCCCCCTT------TTSSCTTCCEEECCSSC
T ss_pred CCCceeEEChhhh--cCCCCCCEEECCCC-CCCccChh------HhccccCCCEEEcCCCC
Confidence 6654322111122 35778888888775 34433221 34557778888887643
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.1e-16 Score=179.87 Aligned_cols=242 Identities=21% Similarity=0.250 Sum_probs=128.8
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCC
Q 048809 229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 307 (878)
.+.++..+..++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.+..++ ..|..+++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3455666666666665442 56666666666666665555666666677777666666553 556666666777766666
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
++.+ ..++++++|++|++++|.++.+|. .+.++++| +.|++.++... .......+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-----------~~L~l~~~~~l-----------~~i~~~~~ 192 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-----------MRLDLGELKKL-----------EYISEGAF 192 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-----------CEEECCCCTTC-----------CEECTTTT
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-----------cEEeCCCCCCc-----------cccChhhc
Confidence 6544 346666666667666666666554 24444333 33344432111 00112234
Q ss_pred cCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEE
Q 048809 385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLC 464 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~ 464 (878)
..+++|+.|++++|....+|. +..+++|+.|+++.+.... ........+++|+.|+
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPE-----------------------IRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSE-----------------------ECGGGGTTCTTCCEEE
T ss_pred cCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcc-----------------------cCcccccCccCCCEEE
Confidence 445555555555555554442 3344555555543211100 0011122356667777
Q ss_pred ecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccc
Q 048809 465 LGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLS 526 (878)
Q Consensus 465 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 526 (878)
++++.........+ ..+++|++|+++++ .+..++.. ....+++|+.|++++.+
T Consensus 249 L~~n~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~------~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 249 VMNSQVSLIERNAF--DGLASLVELNLAHN-NLSSLPHD------LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSCCCEECTTTT--TTCTTCCEEECCSS-CCSCCCTT------SSTTCTTCCEEECCSSC
T ss_pred eCCCcCceECHHHh--cCCCCCCEEECCCC-cCCccChH------HhccccCCCEEEccCCC
Confidence 76654322211122 45778888888776 34433221 34557778888887643
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=175.93 Aligned_cols=165 Identities=22% Similarity=0.326 Sum_probs=111.4
Q ss_pred EEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCCC
Q 048809 231 AISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCELG 309 (878)
Q Consensus 231 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l~ 309 (878)
..+.+++.++++|..+. ++|++|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|++++|.++
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 46667777777776542 4788888888877777776677788888888888877766 455777888888888888777
Q ss_pred Cc--ccccCcccCcEEEeeCCCcccchH--hhcccccCcccccccccCCcEEEccCCC-CCccccccccccccccCcccc
Q 048809 310 DM--AIIGDLKKLVILALRGSDMKELVG--EIGQLTQLRLLIAPILSRLEELYIGESP-IEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 310 ~l--~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~Lip~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L 384 (878)
.+ ..++++++|++|++++|.++.+|. .+++++ +|+.|++.+|. +. ......+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~-----------~L~~L~l~~n~~~~------------~~~~~~~ 170 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT-----------KLQILRVGNMDTFT------------KIQRKDF 170 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT-----------TCCEEEEEESSSCC------------EECTTTT
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC-----------CCcEEECCCCcccc------------ccCHHHc
Confidence 65 337778888888888877777665 344443 44555666552 22 1223456
Q ss_pred cCCCCCCEEEeecCCCCCC-CcchhcccCCceEEEE
Q 048809 385 NNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRIL 419 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~ 419 (878)
+.+++|+.|++++|..... |..+..+++|+.|++.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 6677777777777765544 5555566666666665
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.6e-17 Score=177.30 Aligned_cols=259 Identities=17% Similarity=0.083 Sum_probs=137.0
Q ss_pred EeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccc
Q 048809 255 RIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKEL 333 (878)
Q Consensus 255 ~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~l 333 (878)
+++.+.+...+..++..+++|++|+|++|.++.++ ..++.+++|++|++++|.++.+..++.+++|++|++++|.++.+
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l 95 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL 95 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc
Confidence 33333333444455555666666666666665554 45666666666666666665543366666666666666655544
Q ss_pred hHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCc-chhcccC
Q 048809 334 VGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPR-DLSFFKM 412 (878)
Q Consensus 334 p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~~~l~~ 412 (878)
|. .++|+.|++.+|.+.. .. ...+++|+.|++++|....++. .+..+
T Consensus 96 ~~---------------~~~L~~L~l~~n~l~~------------~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l-- 143 (317)
T 3o53_A 96 LV---------------GPSIETLHAANNNISR------------VS---CSRGQGKKNIYLANNKITMLRDLDEGCR-- 143 (317)
T ss_dssp EE---------------CTTCCEEECCSSCCSE------------EE---ECCCSSCEEEECCSSCCCSGGGBCTGGG--
T ss_pred cC---------------CCCcCEEECCCCccCC------------cC---ccccCCCCEEECCCCCCCCccchhhhcc--
Confidence 32 1344555665555431 00 1124566677776666555432 22222
Q ss_pred CceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCCcEEEEc
Q 048809 413 LQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVV 492 (878)
Q Consensus 413 L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 492 (878)
++|+.|+++++.........+ ...+++|++|+++
T Consensus 144 ---------------------------------------------~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~ 177 (317)
T 3o53_A 144 ---------------------------------------------SRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQ 177 (317)
T ss_dssp ---------------------------------------------SSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECT
T ss_pred ---------------------------------------------CCCCEEECCCCCCCcccHHHH-hhccCcCCEEECC
Confidence 333444443332211111111 1235667777776
Q ss_pred cCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccE
Q 048809 493 KNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQS 572 (878)
Q Consensus 493 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 572 (878)
++. +..++ ....+++|+.|+++++ .++.++. .+..+++|+.|++.++ +++.+|. .+..+++|+.
T Consensus 178 ~N~-l~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~---~~~~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L~~ 241 (317)
T 3o53_A 178 YNF-IYDVK--------GQVVFAKLKTLDLSSN-KLAFMGP---EFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEH 241 (317)
T ss_dssp TSC-CCEEE--------CCCCCTTCCEEECCSS-CCCEECG---GGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCE
T ss_pred CCc-Ccccc--------cccccccCCEEECCCC-cCCcchh---hhcccCcccEEECcCC-cccchhh--HhhcCCCCCE
Confidence 653 33332 2234666777777663 4444422 2456677777777774 5666654 3456777777
Q ss_pred EEEecCCcc-hhhhcccccccccCCCCccccccccceeecccCCCcce
Q 048809 573 IEVTGCQNL-EVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTS 619 (878)
Q Consensus 573 L~l~~c~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 619 (878)
|++++++.. ..++.... .+++|+.|++.+++.++.
T Consensus 242 L~l~~N~~~~~~~~~~~~------------~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFS------------KNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EECTTCCCBHHHHHHHHH------------TCHHHHHHHHHHHHHHHS
T ss_pred EEccCCCccCcCHHHHHh------------ccccceEEECCCchhccC
Confidence 777776554 23332222 267777777776655554
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=6.6e-18 Score=180.20 Aligned_cols=247 Identities=15% Similarity=0.095 Sum_probs=173.4
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR 326 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~ 326 (878)
.+++|++|++++|.+..++...|.++++|++|+|++|.+..+++ +..+++|++|++++|.++.++ ..++|++|+++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEECC
Confidence 46789999999998888887778999999999999999987665 899999999999999876543 34889999999
Q ss_pred CCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcc
Q 048809 327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRD 406 (878)
Q Consensus 327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 406 (878)
+|.++.++.. .+++|+.|++.+|.+. ......+..+++|+.|++++|....++..
T Consensus 108 ~n~l~~~~~~-------------~~~~L~~L~l~~N~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 108 NNNISRVSCS-------------RGQGKKNIYLANNKIT------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SSCCSEEEEC-------------CCSSCEEEECCSSCCC------------SGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCccCCcCcc-------------ccCCCCEEECCCCCCC------------CccchhhhccCCCCEEECCCCCCCcccHH
Confidence 9988876642 3456778888888776 22334567788999999998876654321
Q ss_pred hhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCC
Q 048809 407 LSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQL 486 (878)
Q Consensus 407 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 486 (878)
. +...+++|+.|+++++... .+ +.. ..+++|
T Consensus 163 ~---------------------------------------------~~~~l~~L~~L~L~~N~l~-~~-~~~--~~l~~L 193 (317)
T 3o53_A 163 E---------------------------------------------LAASSDTLEHLNLQYNFIY-DV-KGQ--VVFAKL 193 (317)
T ss_dssp G---------------------------------------------GGGGTTTCCEEECTTSCCC-EE-ECC--CCCTTC
T ss_pred H---------------------------------------------HhhccCcCCEEECCCCcCc-cc-ccc--cccccC
Confidence 1 0012355666666655432 22 222 237888
Q ss_pred cEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhh
Q 048809 487 KRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRG 566 (878)
Q Consensus 487 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~ 566 (878)
++|+++++. +..++. ....+++|+.|+++++ .++.++ ..+..+++|+.|++.+++-.....+ .++..
T Consensus 194 ~~L~Ls~N~-l~~l~~-------~~~~l~~L~~L~L~~N-~l~~l~---~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~ 260 (317)
T 3o53_A 194 KTLDLSSNK-LAFMGP-------EFQSAAGVTWISLRNN-KLVLIE---KALRFSQNLEHFDLRGNGFHCGTLR-DFFSK 260 (317)
T ss_dssp CEEECCSSC-CCEECG-------GGGGGTTCSEEECTTS-CCCEEC---TTCCCCTTCCEEECTTCCCBHHHHH-HHHHT
T ss_pred CEEECCCCc-CCcchh-------hhcccCcccEEECcCC-cccchh---hHhhcCCCCCEEEccCCCccCcCHH-HHHhc
Confidence 999988763 554432 3456788999999885 566553 2356788999999998654312222 35677
Q ss_pred ccCccEEEEecCCcchhh
Q 048809 567 LQQLQSIEVTGCQNLEVI 584 (878)
Q Consensus 567 l~~L~~L~l~~c~~l~~~ 584 (878)
+++|+.++++++..+...
T Consensus 261 ~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CHHHHHHHHHHHHHHHSS
T ss_pred cccceEEECCCchhccCC
Confidence 888888888776555443
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=4.1e-16 Score=163.75 Aligned_cols=166 Identities=20% Similarity=0.274 Sum_probs=133.8
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCC
Q 048809 229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 307 (878)
.+.++.+++.++.+|..+ .++|++|++++|.+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 378889999999998755 57999999999999999988889999999999999999877 7889999999999999997
Q ss_pred -CCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccc
Q 048809 308 -LGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHE 383 (878)
Q Consensus 308 -l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 383 (878)
++.+ ..+.++++|++|++++|.++.++ ..++++ ++|+.|++.+|.+. ......
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~L~~L~l~~n~l~------------~~~~~~ 148 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-----------AALQYLYLQDNALQ------------ALPDDT 148 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-----------TTCCEEECCSSCCC------------CCCTTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC-----------cCCCEEECCCCccc------------ccCHhH
Confidence 8765 67999999999999999888774 345544 45667788888765 223345
Q ss_pred ccCCCCCCEEEeecCCCCCCCcc-hhcccCCceEEE
Q 048809 384 LNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRI 418 (878)
Q Consensus 384 L~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l 418 (878)
++.+++|+.|++++|....+|.. +..+++|+.|++
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 78889999999999987766653 334455555544
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=3.6e-16 Score=175.73 Aligned_cols=190 Identities=18% Similarity=0.271 Sum_probs=147.4
Q ss_pred CCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-cc
Q 048809 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LG 293 (878)
Q Consensus 217 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~ 293 (878)
+...| ..++.++++|++++|.++.++.. + .+++|++|++++|.+..++...|..+++|++|+|++|.++.+|.. +.
T Consensus 66 l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 66 LSEVP-QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp CSSCC-SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred cCccC-CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 33444 34667899999999999987543 3 899999999999999999888889999999999999999988755 88
Q ss_pred CCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCC-CcccchHh-hcccccCccc---------ccc--cccCCcEEE
Q 048809 294 LLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGS-DMKELVGE-IGQLTQLRLL---------IAP--ILSRLEELY 358 (878)
Q Consensus 294 ~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~L~~L~~L---------ip~--~l~~L~~L~ 358 (878)
.+++|++|+|++|.++.+ ..+.++++|++|++++| .+..+|.. +.++.+|++| +|. .+.+|+.|+
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE 224 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEE
Confidence 999999999999999876 57999999999999996 77777764 7778777777 232 556777777
Q ss_pred ccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCC-cchhcccCCceEEEE
Q 048809 359 IGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRIL 419 (878)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 419 (878)
+++|.+. ...+..+.++++|+.|++++|....++ ..+..+++|+.|+++
T Consensus 225 Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 225 MSGNHFP------------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp CTTSCCS------------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcCCcCc------------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 7777655 233456667777777777777665543 334456667777664
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=5e-16 Score=173.94 Aligned_cols=191 Identities=18% Similarity=0.287 Sum_probs=145.7
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SL 292 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i 292 (878)
.+...| ..++.+++.|++++|.++.++.. + .+++|++|++++|.+..++...|..+++|++|+|++|.++.+|. .+
T Consensus 54 ~l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 54 NLREVP-DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp CCSSCC-SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CcCcCC-CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 344444 34678899999999999987643 3 89999999999999999998889999999999999999999875 68
Q ss_pred cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCC-CcccchH-hhcccccCccc---------ccc--cccCCcEE
Q 048809 293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGS-DMKELVG-EIGQLTQLRLL---------IAP--ILSRLEEL 357 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L---------ip~--~l~~L~~L 357 (878)
..+++|++|+|++|.++.+ ..+.++++|++|++++| .+..++. .+.++.+|++| +|. .+++|+.|
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 212 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEE
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEE
Confidence 9999999999999999876 57999999999999996 6777776 47777777777 332 55666677
Q ss_pred EccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCC-cchhcccCCceEEEE
Q 048809 358 YIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRIL 419 (878)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 419 (878)
++++|.+. ...+..+..+++|+.|++++|.+..++ ..+..+++|+.|+++
T Consensus 213 ~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 213 DLSGNHLS------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp ECTTSCCC------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ECCCCccC------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 77666554 223455666667777777766655443 233455666666653
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=6e-16 Score=157.79 Aligned_cols=144 Identities=15% Similarity=0.232 Sum_probs=101.0
Q ss_pred CCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCC-CCCCCc-cccCCCCCcEEEccC-CCCCCc--c
Q 048809 238 NINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMH-LLALPS-SLGLLQNLQTLSLDY-CELGDM--A 312 (878)
Q Consensus 238 ~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~l--~ 312 (878)
.++.+|. -.++|++|++++|.+..+|...|..+++|++|++++|. ++.+|. .+..+++|++|++++ |.++.+ .
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3677777 23488888888888888888777888888888888886 877765 678888888888888 778765 4
Q ss_pred cccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCC-CCCccccccccccccccCcccccCCCCCC
Q 048809 313 IIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGES-PIEWGKVEGVDGERRNASLHELNNLSKLT 391 (878)
Q Consensus 313 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 391 (878)
.+.++++|++|++++|.++.+|. ++++.+|+ .|+.|++.+| .+. ......+..+++|+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~--------~L~~L~l~~N~~l~------------~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTD--------IFFILEITDNPYMT------------SIPVNAFQGLCNET 158 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCC--------SEEEEEEESCTTCC------------EECTTTTTTTBSSE
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccc--------cccEEECCCCcchh------------hcCcccccchhcce
Confidence 67888888888888888877775 55554433 1245666665 443 11223355566666
Q ss_pred -EEEeecCCCCCCC
Q 048809 392 -SLEILIQDEKTLP 404 (878)
Q Consensus 392 -~L~l~~~~~~~~~ 404 (878)
.|++++|....+|
T Consensus 159 ~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQ 172 (239)
T ss_dssp EEEECCSCCCCEEC
T ss_pred eEEEcCCCCCcccC
Confidence 6666666554444
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1.4e-15 Score=161.10 Aligned_cols=178 Identities=18% Similarity=0.265 Sum_probs=127.8
Q ss_pred cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 305 (878)
++++++|++.++.++.++....+++|++|++++|.+..++. |..+++|++|++++|.+..+| .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 45677777777777776654467777777777777666665 577777777777777776664 567777777777777
Q ss_pred CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCccc---------ccc--cccCCcEEEccCCCCCccccccccc
Q 048809 306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------IAP--ILSRLEELYIGESPIEWGKVEGVDG 374 (878)
Q Consensus 306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L---------ip~--~l~~L~~L~l~~~~~~~~~~~~~~~ 374 (878)
|.++.++.++++++|++|++++|.++.++. ++++++|++| ++. .+++|+.|++.+|.+.
T Consensus 117 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--------- 186 (308)
T 1h6u_A 117 TQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS--------- 186 (308)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---------
T ss_pred CCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccC---------
Confidence 777766557777777777777777766665 6666666666 222 5678888899888765
Q ss_pred cccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecc
Q 048809 375 ERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGS 422 (878)
Q Consensus 375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 422 (878)
.+..+..+++|+.|++++|....++. +..+++|+.|++..+.
T Consensus 187 -----~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 187 -----DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp -----CCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred -----cChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 12237788899999999998887774 6688899999987543
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=6.2e-16 Score=164.23 Aligned_cols=171 Identities=24% Similarity=0.323 Sum_probs=137.3
Q ss_pred ccCCCcEEEeeCCCCCCCC---CC-CCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc--cccCCCCC
Q 048809 225 VLKDCTAISLNNSNINELP---QG-FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS--SLGLLQNL 298 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~---~~-~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~--~i~~L~~L 298 (878)
...++++|++++|.++.+. .. ..+++|++|++++|.+..+|.. |..+++|++|++++|.+..++. .+..+++|
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCC
Confidence 4678999999999988652 22 2789999999999988888877 5899999999999999988864 78999999
Q ss_pred cEEEccCCCCCCc--ccccCcccCcEEEeeCCCccc--chHhhcccccCcccccccccCCcEEEccCCCCCccccccccc
Q 048809 299 QTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDG 374 (878)
Q Consensus 299 ~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~ 374 (878)
++|++++|.+... ..++++++|++|++++|.+.. +|..++.++ +|+.|++++|.+.
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-----------~L~~L~Ls~n~l~--------- 188 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----------NLTFLDLSQCQLE--------- 188 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----------TCCEEECTTSCCC---------
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-----------CCCEEECCCCCcC---------
Confidence 9999999998743 678999999999999998775 666666554 5566688777665
Q ss_pred cccccCcccccCCCCCCEEEeecCCCCCCCc-chhcccCCceEEEE
Q 048809 375 ERRNASLHELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL 419 (878)
Q Consensus 375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 419 (878)
...+..+..+++|+.|++++|....++. .+..+++|+.|+++
T Consensus 189 ---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 189 ---QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp ---EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred ---CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 2234567778888888888888776654 44567778887775
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.1e-15 Score=156.84 Aligned_cols=174 Identities=22% Similarity=0.385 Sum_probs=134.7
Q ss_pred cccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcE
Q 048809 224 DVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQT 300 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~ 300 (878)
.++.++++|++++|.++.++.. + .+++|++|++++|.+..+|..+|..+++|++|++++|.+..+|. .+..+++|++
T Consensus 34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 3556788888888888887753 3 78888888888888888888878888888888888888887764 4578888888
Q ss_pred EEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809 301 LSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR 377 (878)
Q Consensus 301 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 377 (878)
|++++|.++.+ ..++++++|++|++++|.++.+|.. +++ +++|+.|++.+|.+.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----------l~~L~~L~L~~n~l~------------ 170 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK-----------LTSLKELRLYNNQLK------------ 170 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------CTTCCEEECCSSCCS------------
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC-----------CcccceeEecCCcCc------------
Confidence 88888887765 4578888888888888888877765 444 446677788888765
Q ss_pred ccCcccccCCCCCCEEEeecCCCCCCCcc-hhcccCCceEEEEe
Q 048809 378 NASLHELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILI 420 (878)
Q Consensus 378 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 420 (878)
......+.++++|+.|++++|....+|.. +..+++|+.|++..
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 22334577889999999999998888765 45788899988864
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=6.9e-18 Score=190.85 Aligned_cols=393 Identities=16% Similarity=0.097 Sum_probs=229.2
Q ss_pred cCCCcEEEeeCCCCCCCCCC--C-CCCCccEEEeecCCCCC-----CCchhhcCCCCCcEEEeeCCCCCC-CCccc-cCC
Q 048809 226 LKDCTAISLNNSNINELPQG--F-ECPQLKYFRIHNDHSLK-----IPDNFFTGMTELRVLDFTRMHLLA-LPSSL-GLL 295 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~~~~-----l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i-~~L 295 (878)
++++++|+++++.++..+.. + .+++|++|++++|.+.. ++. .+..+++|++|+|++|.+.. .+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 34678889988887654321 2 67889999999987663 333 35788999999999998854 22233 334
Q ss_pred C----CCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCC
Q 048809 296 Q----NLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPI 364 (878)
Q Consensus 296 ~----~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~ 364 (878)
. +|++|++++|.++. + ..+.++++|++|++++|.+... +..+... +....++|+.|++.+|.+
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG------LLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH------HTSTTCCCCEEECTTSCC
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH------HhcCCCcceEEECCCCCC
Confidence 4 69999999998773 2 6788899999999999876542 2222210 001234677788888766
Q ss_pred CccccccccccccccCcccccCCCCCCEEEeecCCCCCCC-cchh-----cccCCceEEEEecccccccccchhhhhhhh
Q 048809 365 EWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP-RDLS-----FFKMLQRYRILIGSQWTWDYISSEISEIFR 438 (878)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 438 (878)
... ........+..+++|+.|++++|...... ..+. ..++|+.|++..+..... .
T Consensus 155 ~~~--------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---~-------- 215 (461)
T 1z7x_W 155 SAA--------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD---N-------- 215 (461)
T ss_dssp BGG--------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT---H--------
T ss_pred CHH--------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH---H--------
Confidence 511 11123455666788888888887654321 1111 244788887753321100 0
Q ss_pred hhhccCCccccchhHHhhccccceEEecCcCCccccc----ccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcc
Q 048809 439 LMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVL----YGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAF 514 (878)
Q Consensus 439 ~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 514 (878)
..........+++|++|+++++....... +.+. ..+++|++|++.+|. +...... .... ....+
T Consensus 216 --------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~-~~~~~L~~L~L~~n~-l~~~~~~-~l~~-~l~~~ 283 (461)
T 1z7x_W 216 --------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL-HPSSRLRTLWIWECG-ITAKGCG-DLCR-VLRAK 283 (461)
T ss_dssp --------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSC-CCHHHHH-HHHH-HHHHC
T ss_pred --------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh-cCCCCceEEECcCCC-CCHHHHH-HHHH-HHhhC
Confidence 00001112246888999998875322111 1111 247899999998873 3321000 0000 33457
Q ss_pred cccceeeccccccccceecCCCC---ccccCCccEEEeecCCCcccccc---hhhhhhccCccEEEEecCCcchhhhccc
Q 048809 515 PVLESLLLRHLSNLEKICRGPLA---AESFCKVKDIRVEWCDKLKNVFP---LVIGRGLQQLQSIEVTGCQNLEVIFAAE 588 (878)
Q Consensus 515 ~~L~~L~L~~~~~L~~~~~~~~~---~~~l~~L~~L~l~~c~~L~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 588 (878)
++|+.|+++++ .+......... ....++|+.|++.+|. ++.... ...+..+++|++|++++|. +.......
T Consensus 284 ~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~ 360 (461)
T 1z7x_W 284 ESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRE 360 (461)
T ss_dssp TTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHH
T ss_pred CCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHH
Confidence 89999999985 33321100000 1123699999999984 544311 1245678999999999984 44432211
Q ss_pred ccccccCCCCcc-ccccccceeecccCCCcc-----eecCCCcccccCCcceEEEecCCCcc-cc-ccccccccccccce
Q 048809 589 RGDESSNSNTQV-IELTQLTTLELCSLPQLT-----SFCTGDLHFEFPSLEKLKILECPQVK-FK-STIHESTKKRFHTI 660 (878)
Q Consensus 589 ~~~~~~~~~~~~-~~~~~L~~L~L~~c~~l~-----~~~~~~~~~~~~~L~~L~l~~C~~l~-lp-~~~~~~~~~~l~~L 660 (878)
... .. ...++|++|++++|. ++ .++. ....+++|++|++++|+ ++ .. ..+.+.-.....+|
T Consensus 361 l~~-------~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L 429 (461)
T 1z7x_W 361 LCQ-------GLGQPGSVLRVLWLADCD-VSDSSCSSLAA--TLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLL 429 (461)
T ss_dssp HHH-------HHTSTTCCCCEEECTTSC-CCHHHHHHHHH--HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCC
T ss_pred HHH-------HHcCCCCceEEEECCCCC-CChhhHHHHHH--HHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcch
Confidence 100 00 015799999999984 44 3332 24468999999999974 44 11 11111100014578
Q ss_pred eEEEEecccc
Q 048809 661 KVLCIEGYDY 670 (878)
Q Consensus 661 ~~L~l~~c~~ 670 (878)
+.|.+.++..
T Consensus 430 ~~L~~~~~~~ 439 (461)
T 1z7x_W 430 EQLVLYDIYW 439 (461)
T ss_dssp CEEECTTCCC
T ss_pred hheeeccccc
Confidence 8888888765
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=1.5e-15 Score=159.24 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=104.1
Q ss_pred CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCC
Q 048809 228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 307 (878)
+++.+++.++.++.+|..+. +++++|++++|.+..++...|..+++|++|+|++|.++.+|.. +.+++|++|++++|.
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC
T ss_pred CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc
Confidence 34455555555555444332 3455555555544444444445555555555555555444332 444555555555555
Q ss_pred CCCc-ccccCcccCcEEEeeCCCcccchH-hhcccccCccc---------ccc----cccCCcEEEccCCCCCccccccc
Q 048809 308 LGDM-AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLL---------IAP----ILSRLEELYIGESPIEWGKVEGV 372 (878)
Q Consensus 308 l~~l-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L---------ip~----~l~~L~~L~l~~~~~~~~~~~~~ 372 (878)
++.+ ..+..+++|++|++++|.++.+|. .|+++++|++| +|. .+++|+.|++.+|.+.
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------- 161 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT------- 161 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-------
T ss_pred CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-------
Confidence 4443 334445555555555555544442 24444444444 111 4567888899988776
Q ss_pred cccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809 373 DGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI 420 (878)
Q Consensus 373 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 420 (878)
......+..+++|+.|++++|....+|.++....+|+.+.+..
T Consensus 162 -----~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 162 -----ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred -----ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 1223446788999999999999999999888888899988863
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.2e-15 Score=159.24 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=66.6
Q ss_pred ccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEE
Q 048809 225 VLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTL 301 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L 301 (878)
++.++++|++++|.++.++. .+ .+++|++|++++|.+..++...|..+++|++|++++|.+..++ ..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 34456666666666665543 22 5566666666666665555555566666666666666665543 445666666666
Q ss_pred EccCCCCCCc--ccccCcccCcEEEeeCCCccc--chHhhcc
Q 048809 302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKE--LVGEIGQ 339 (878)
Q Consensus 302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~ 339 (878)
++++|.+..+ ..++++++|++|++++|.++. +|..+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc
Confidence 6666665544 245666666666666665554 3444443
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1.4e-15 Score=155.02 Aligned_cols=186 Identities=13% Similarity=0.213 Sum_probs=156.1
Q ss_pred CCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCC-CCCCCchhhcCCCCCcEEEeeC-CCCCCCC-cc
Q 048809 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDH-SLKIPDNFFTGMTELRVLDFTR-MHLLALP-SS 291 (878)
Q Consensus 217 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~-~~~l~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~ 291 (878)
....|. ++.++++|++++|.++.++.. + .+++|++|++++|. +..++...|..+++|++|++++ |.++.+| ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 344454 677899999999999998873 3 89999999999996 9999988889999999999999 9999887 56
Q ss_pred ccCCCCCcEEEccCCCCCCcccccCcccCc---EEEeeCC-CcccchHh-hcccccCc-cc---------ccc---cccC
Q 048809 292 LGLLQNLQTLSLDYCELGDMAIIGDLKKLV---ILALRGS-DMKELVGE-IGQLTQLR-LL---------IAP---ILSR 353 (878)
Q Consensus 292 i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L---------ip~---~l~~ 353 (878)
+..+++|++|++++|.++.++.++.+.+|+ +|++++| .++.+|.. ++++++|+ +| +|. ..++
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK 180 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCE
T ss_pred hCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCC
Confidence 899999999999999998886688888888 9999999 99998875 88999999 88 343 2367
Q ss_pred CcEEEccCCC-CCccccccccccccccCcccccCC-CCCCEEEeecCCCCCCCcchhcccCCceEEE
Q 048809 354 LEELYIGESP-IEWGKVEGVDGERRNASLHELNNL-SKLTSLEILIQDEKTLPRDLSFFKMLQRYRI 418 (878)
Q Consensus 354 L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 418 (878)
|+.|++.+|. +. ......+..+ ++|+.|++++|....+|.. .+++|+.|++
T Consensus 181 L~~L~L~~n~~l~------------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 181 LDAVYLNKNKYLT------------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIA 233 (239)
T ss_dssp EEEEECTTCTTCC------------EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEEC
T ss_pred CCEEEcCCCCCcc------------cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeec
Confidence 8999999884 65 2233556777 8999999999998888876 6888888876
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=7.5e-16 Score=174.04 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=43.3
Q ss_pred CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCCC
Q 048809 250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSD 329 (878)
Q Consensus 250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~ 329 (878)
+|++|++++|.+..++...|..+++|++|+|++|.+..+++ ++.+++|++|+|++|.++.++ ..++|++|++++|.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCCc
Confidence 55555555555555554445555566666666555554433 555555555555555544331 12555555555555
Q ss_pred cccch
Q 048809 330 MKELV 334 (878)
Q Consensus 330 l~~lp 334 (878)
++.+|
T Consensus 111 l~~~~ 115 (487)
T 3oja_A 111 ISRVS 115 (487)
T ss_dssp CCCEE
T ss_pred CCCCC
Confidence 54433
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=7.4e-15 Score=152.63 Aligned_cols=154 Identities=23% Similarity=0.384 Sum_probs=131.3
Q ss_pred ccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEE
Q 048809 225 VLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTL 301 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L 301 (878)
...++++|++++|.++.++... .+++|++|++++|.+..+|...|..+++|++|++++|.+..+|. .++.+++|++|
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 4678999999999999998765 79999999999999999999889999999999999999988864 57999999999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809 302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN 378 (878)
Q Consensus 302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (878)
++++|.++.+ ..++++++|++|++++|.++.+|.. +.++ ++|+.|++.+|.+. .
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~------------~ 195 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL-----------TELKTLKLDNNQLK------------R 195 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----------TTCCEEECCSSCCS------------C
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC-----------CCcCEEECCCCcCC------------c
Confidence 9999999876 4589999999999999999988764 5544 45677799888765 1
Q ss_pred cCcccccCCCCCCEEEeecCCCC
Q 048809 379 ASLHELNNLSKLTSLEILIQDEK 401 (878)
Q Consensus 379 ~~~~~L~~l~~L~~L~l~~~~~~ 401 (878)
.....+..+++|+.|++++|...
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCHHHhccccCCCEEEecCCCee
Confidence 22345778899999999998754
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=2.1e-14 Score=147.41 Aligned_cols=167 Identities=20% Similarity=0.374 Sum_probs=107.7
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCC
Q 048809 229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 307 (878)
.++++++++.++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.+..++ ..+..+++|++|++++|.
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 4567777777777766553 56777777777777766666677777777777777776654 346777777777777777
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
++.+ ..++.+++|++|++++|.++.+|.. ++++ ++|+.|++.+|.+. ......+
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~Ls~N~l~------------~~~~~~~ 151 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-----------TKLKELRLNTNQLQ------------SIPAGAF 151 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCC------------CCCTTTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC-----------CcccEEECcCCcCC------------ccCHHHc
Confidence 6654 4566777777777777777766654 3433 34455566666554 1122345
Q ss_pred cCCCCCCEEEeecCCCCCCCc-chhcccCCceEEEE
Q 048809 385 NNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL 419 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 419 (878)
+.+++|+.|++++|....++. .+..+++|+.|++.
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 666777777777776666654 34456667766664
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=2.3e-14 Score=149.58 Aligned_cols=152 Identities=20% Similarity=0.266 Sum_probs=120.2
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEEEccCCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~l 308 (878)
..++..+..+.++|..+. ++|++|++++|.+..++...|.++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 10 ~~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ceEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 345566667778887653 689999999999999988778999999999999999988764 789999999999999998
Q ss_pred CCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 309 GDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
+.+ ..++++++|++|++++|.+..++. .++++ ++|+.|++.+|.+.. ...+..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~L~~L~l~~n~l~~-----------~~l~~~~~ 146 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-----------KTLKELNVAHNLIQS-----------FKLPEYFS 146 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC-----------TTCCEEECCSSCCCC-----------CCCCGGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccC-----------CCCCEEECcCCccce-----------ecCchhhc
Confidence 865 679999999999999998887765 34443 456667888776651 11356677
Q ss_pred CCCCCCEEEeecCCCCCCC
Q 048809 386 NLSKLTSLEILIQDEKTLP 404 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~~~~~ 404 (878)
.+++|+.|++++|....++
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp GCTTCCEEECCSSCCCEEC
T ss_pred cCCCCCEEECCCCCCCcCC
Confidence 8888888888888776654
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2.6e-14 Score=150.00 Aligned_cols=168 Identities=21% Similarity=0.276 Sum_probs=141.0
Q ss_pred ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809 225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD 304 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 304 (878)
.+.++++|+++++.++.++....+++|++|++++|.+..++. +.++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 356789999999999998876689999999999999888887 6999999999999999988765 9999999999999
Q ss_pred CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
+|.++.++.++.+++|++|++++|.++.+ ..++++ ++|+.|++++|.+. ....+
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l-----------~~L~~L~L~~N~l~--------------~~~~l 174 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRL-----------TKLDTLSLEDNQIS--------------DIVPL 174 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGC-----------TTCSEEECCSSCCC--------------CCGGG
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccC-----------CCCCEEEccCCccc--------------cchhh
Confidence 99999888899999999999999988887 345544 45677788888765 11227
Q ss_pred cCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecc
Q 048809 385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGS 422 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 422 (878)
..+++|+.|++++|....++. +..+++|+.|++..+.
T Consensus 175 ~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 888999999999998888764 6688899999987543
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=3e-14 Score=150.85 Aligned_cols=170 Identities=21% Similarity=0.339 Sum_probs=146.4
Q ss_pred CCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCC
Q 048809 219 SWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNL 298 (878)
Q Consensus 219 ~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 298 (878)
..+....+.++++|++++|.+..++....+++|++|++++|.+..++. |..+++|++|++++|.+..+|. +..+++|
T Consensus 55 ~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 131 (308)
T 1h6u_A 55 TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGLSNL 131 (308)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTCTTC
T ss_pred CchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hcCCCCC
Confidence 344445578899999999999998885589999999999998888863 6999999999999999998875 9999999
Q ss_pred cEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCccc---------ccc--cccCCcEEEccCCCCCcc
Q 048809 299 QTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------IAP--ILSRLEELYIGESPIEWG 367 (878)
Q Consensus 299 ~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L---------ip~--~l~~L~~L~l~~~~~~~~ 367 (878)
++|++++|.++.++.++++++|++|++++|.++.++. ++++++|++| ++. .+++|+.|++++|.+.
T Consensus 132 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~-- 208 (308)
T 1h6u_A 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS-- 208 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC--
T ss_pred CEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC--
Confidence 9999999999988779999999999999999999887 8999999998 332 7889999999999876
Q ss_pred ccccccccccccCcccccCCCCCCEEEeecCCCCCCCcc
Q 048809 368 KVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRD 406 (878)
Q Consensus 368 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 406 (878)
....+..+++|+.|++++|.....|..
T Consensus 209 ------------~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 209 ------------DVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp ------------BCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred ------------ccccccCCCCCCEEEccCCeeecCCee
Confidence 122488999999999999987766643
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=2e-14 Score=155.49 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=86.6
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CCC-ccccCCCCCcE-EEccCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-ALP-SSLGLLQNLQT-LSLDYC 306 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp-~~i~~L~~L~~-L~L~~~ 306 (878)
+.++.++++++++|..+ .+++++|++++|.+..+|.+.|.++++|++|+|++|.+. .+| ..|.++++|++ +.+++|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56788888899998766 468999999999999999888899999999999999984 465 45788888775 566667
Q ss_pred CCCCc--ccccCcccCcEEEeeCCCcccchH
Q 048809 307 ELGDM--AIIGDLKKLVILALRGSDMKELVG 335 (878)
Q Consensus 307 ~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~ 335 (878)
.++.+ ..+..+++|++|++++|.++.+|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred cccccCchhhhhccccccccccccccccCCc
Confidence 78765 668899999999999998887765
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=4.5e-14 Score=146.81 Aligned_cols=171 Identities=22% Similarity=0.316 Sum_probs=135.1
Q ss_pred ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEc
Q 048809 225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSL 303 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L 303 (878)
.+++++.+++.++.++.++....+++|++|++++|.+..++ .+..+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 46678999999999888877668899999999999887765 368999999999999999887654 688999999999
Q ss_pred cCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccC
Q 048809 304 DYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNAS 380 (878)
Q Consensus 304 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 380 (878)
++|.++.+ ..++++++|++|++++|.++.+|.. ++++ ++|+.|++.+|.+. ...
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----------~~L~~L~l~~n~l~------------~~~ 173 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-----------TNLTELDLSYNQLQ------------SLP 173 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCC------------CCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-----------ccCCEEECCCCCcC------------ccC
Confidence 99998865 4478999999999999988887765 3544 45667788887665 223
Q ss_pred cccccCCCCCCEEEeecCCCCCCCcc-hhcccCCceEEEEe
Q 048809 381 LHELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILI 420 (878)
Q Consensus 381 ~~~L~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 420 (878)
...++.+++|+.|++++|....++.. +..+++|+.|++..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 34467888899999998887777654 45788888888753
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=2.9e-14 Score=161.09 Aligned_cols=163 Identities=13% Similarity=0.212 Sum_probs=123.7
Q ss_pred cCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEc
Q 048809 226 LKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSL 303 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L 303 (878)
++++++|++++|.+..+++ .+ .+++|++|++++|.+..+++ |..+++|++|+|++|.+..+|.. ++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 4579999999999998874 33 89999999999998877665 79999999999999999877643 89999999
Q ss_pred cCCCCCCcccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcc
Q 048809 304 DYCELGDMAIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLH 382 (878)
Q Consensus 304 ~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (878)
++|.++.+.. ..+++|++|++++|.++.++. .+++++ +|+.|++++|.+. ...+.
T Consensus 107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~Ls~N~l~------------~~~~~ 162 (487)
T 3oja_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRS-----------RVQYLDLKLNEID------------TVNFA 162 (487)
T ss_dssp CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGS-----------SEEEEECTTSCCC------------EEEGG
T ss_pred cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCC-----------CCCEEECCCCCCC------------CcChH
Confidence 9999987622 356899999999999988754 566555 4556677777665 22334
Q ss_pred ccc-CCCCCCEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809 383 ELN-NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL 419 (878)
Q Consensus 383 ~L~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 419 (878)
.+. .+++|+.|++++|....+|... .+++|+.|+++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls 199 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLS 199 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECC
T ss_pred HHhhhCCcccEEecCCCccccccccc-cCCCCCEEECC
Confidence 443 6778888888888766655433 35555555553
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=9.4e-14 Score=142.52 Aligned_cols=164 Identities=20% Similarity=0.367 Sum_probs=136.3
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSL 292 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i 292 (878)
.....|. .++.++++|++++|.+..++.. + .+++|++|++++|.+..++...|..+++|++|+|++|.++.+| ..+
T Consensus 25 ~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 103 (251)
T 3m19_A 25 SLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF 103 (251)
T ss_dssp CCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh
Confidence 3444443 3567899999999999988764 3 7999999999999999999888899999999999999999887 457
Q ss_pred cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCcccc
Q 048809 293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKV 369 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~ 369 (878)
..+++|++|+|++|.++.+ ..++++.+|++|++++|.++.+|.. ++++. +|+.|++.+|.+.
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~---- 168 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-----------NLQTLSLSTNQLQ---- 168 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCS----
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc-----------CCCEEECCCCcCC----
Confidence 8999999999999999876 4479999999999999999998873 66544 5667799988776
Q ss_pred ccccccccccCcccccCCCCCCEEEeecCCCCCC
Q 048809 370 EGVDGERRNASLHELNNLSKLTSLEILIQDEKTL 403 (878)
Q Consensus 370 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 403 (878)
......+..+++|+.|++++|.....
T Consensus 169 --------~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 --------SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred --------ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 22345678899999999999986544
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=5.5e-14 Score=149.38 Aligned_cols=175 Identities=19% Similarity=0.262 Sum_probs=135.8
Q ss_pred cCCCcEEEeeCCCCC-CCCCC---CCCCCccEEEeecCCCCCCCchhhcCC-----CCCcEEEeeCCCCCCCC-ccccCC
Q 048809 226 LKDCTAISLNNSNIN-ELPQG---FECPQLKYFRIHNDHSLKIPDNFFTGM-----TELRVLDFTRMHLLALP-SSLGLL 295 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~-~l~~~---~~~~~Lr~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~Ls~~~i~~lp-~~i~~L 295 (878)
..++++|++++|.++ .+|.. ..+++|++|++++|.+..+|.. |..+ ++|++|++++|.+..+| ..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 567999999999987 46665 3789999999999988888654 5666 89999999999998876 789999
Q ss_pred CCCcEEEccCCCCCC----cccc--cCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccc
Q 048809 296 QNLQTLSLDYCELGD----MAII--GDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKV 369 (878)
Q Consensus 296 ~~L~~L~L~~~~l~~----l~~i--~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~ 369 (878)
++|++|++++|.+.. +..+ +++++|++|++++|.++.+|.....+. ..+++|+.|++++|.+...
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~-- 243 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA-------AARVQLQGLDLSHNSLRDA-- 243 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH-------HTTCCCSEEECTTSCCCSS--
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH-------hcCCCCCEEECCCCcCCcc--
Confidence 999999999998652 2344 899999999999998886553211110 0345778889999877611
Q ss_pred ccccccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEec
Q 048809 370 EGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIG 421 (878)
Q Consensus 370 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 421 (878)
.....+..+++|+.|++++|....+|.++. ++|+.|+++.+
T Consensus 244 ---------~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 244 ---------AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp ---------CCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS
T ss_pred ---------cchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC
Confidence 112445567899999999999999998774 78888888643
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=1.5e-13 Score=142.73 Aligned_cols=160 Identities=19% Similarity=0.305 Sum_probs=134.6
Q ss_pred CCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCC
Q 048809 219 SWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQN 297 (878)
Q Consensus 219 ~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~ 297 (878)
.++....++++++|++++|.+..++....+++|++|++++|.+..++...|..+++|++|++++|.+..+|.. ++.+++
T Consensus 55 ~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 3444456789999999999999887555899999999999999999998889999999999999999988755 799999
Q ss_pred CcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccc
Q 048809 298 LQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDG 374 (878)
Q Consensus 298 L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~ 374 (878)
|++|++++|.++.+ ..++++++|++|++++|.++.+|.. ++++ ++|+.|++.+|.+.
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~--------- 194 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL-----------TQLKDLRLYQNQLK--------- 194 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCS---------
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC-----------ccCCEEECCCCcCC---------
Confidence 99999999998876 4479999999999999999888765 4544 46677799888776
Q ss_pred cccccCcccccCCCCCCEEEeecCCCC
Q 048809 375 ERRNASLHELNNLSKLTSLEILIQDEK 401 (878)
Q Consensus 375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~ 401 (878)
......+..+++|+.|++++|...
T Consensus 195 ---~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 ---SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---ccCHHHHhCCcCCCEEEccCCCcc
Confidence 223455788999999999998754
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=6.7e-14 Score=146.62 Aligned_cols=163 Identities=19% Similarity=0.233 Sum_probs=135.8
Q ss_pred cccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809 224 DVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL 301 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L 301 (878)
.++.++++|++++|.+..++.. + .+++|++|++++|.+..++.. ..+++|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 3567899999999998877543 3 789999999999988888763 78899999999999999999989999999999
Q ss_pred EccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCccc---------ccc----cccCCcEEEccCCCCC
Q 048809 302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLL---------IAP----ILSRLEELYIGESPIE 365 (878)
Q Consensus 302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L---------ip~----~l~~L~~L~l~~~~~~ 365 (878)
++++|.++.+ ..+.++++|++|++++|.++.+|.+ +.++++|++| +|. .+++|+.|++.+|.+.
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 9999998865 5688999999999999988888866 6788888888 443 5789999999999876
Q ss_pred ccccccccccccccCcccccCCCCCCEEEeecCCCC
Q 048809 366 WGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK 401 (878)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 401 (878)
..+..+....+|+.+++++|...
T Consensus 186 -------------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 186 -------------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -------------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred -------------ccChhhcccccCCeEEeCCCCcc
Confidence 34456667789999999998754
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=9.3e-14 Score=136.65 Aligned_cols=149 Identities=20% Similarity=0.257 Sum_probs=121.2
Q ss_pred ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC-CCccccCCCCCcEEEc
Q 048809 225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA-LPSSLGLLQNLQTLSL 303 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L~L 303 (878)
.+.++++|+++++.++.++....+++|++|++++|.+..++ .|..+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 35679999999999999885558999999999999776665 36899999999999999975 6888999999999999
Q ss_pred cCCCCCC--cccccCcccCcEEEeeCCC-cccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccC
Q 048809 304 DYCELGD--MAIIGDLKKLVILALRGSD-MKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNAS 380 (878)
Q Consensus 304 ~~~~l~~--l~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 380 (878)
++|.++. +..++++++|++|++++|. ++.+| .++.+ ++|+.|++.+|.+. .
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l-----------~~L~~L~l~~n~i~--------------~ 173 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTL-----------PELKSLNIQFDGVH--------------D 173 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGC-----------SSCCEEECTTBCCC--------------C
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCC-----------CCCCEEECCCCCCc--------------C
Confidence 9999886 4889999999999999996 88876 45544 45667788887665 1
Q ss_pred cccccCCCCCCEEEeecCCCC
Q 048809 381 LHELNNLSKLTSLEILIQDEK 401 (878)
Q Consensus 381 ~~~L~~l~~L~~L~l~~~~~~ 401 (878)
+..+..+++|+.|++++|.+.
T Consensus 174 ~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTTGGGCSSCCEEEECBC---
T ss_pred hHHhccCCCCCEEEeeCcccC
Confidence 236778889999999988754
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2.2e-13 Score=137.42 Aligned_cols=150 Identities=21% Similarity=0.300 Sum_probs=124.2
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCC
Q 048809 229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCE 307 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 307 (878)
.+.++.+++.+..+|..+. ++|++|++++|.+..++...|..+++|++|+|++|.+..+|.. +..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3568888888999987664 8999999999999988777789999999999999999988755 6899999999999999
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
++.+ ..+..+.+|++|++++|.++.+|..+.++. +|+.|++.+|.+. ......+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-----------~L~~L~L~~N~l~------------~~~~~~~~ 156 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT-----------HLTHLALDQNQLK------------SIPHGAFD 156 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCT-----------TCSEEECCSSCCC------------CCCTTTTT
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCC-----------CCCEEECCCCcCC------------ccCHHHHh
Confidence 8876 447899999999999999999998876554 5566788888765 12235577
Q ss_pred CCCCCCEEEeecCCCCC
Q 048809 386 NLSKLTSLEILIQDEKT 402 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~~~ 402 (878)
.+++|+.|++++|....
T Consensus 157 ~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TCTTCCEEECTTSCBCT
T ss_pred CCCCCCEEEeeCCCccC
Confidence 88899999999887554
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=2e-13 Score=136.74 Aligned_cols=147 Identities=16% Similarity=0.299 Sum_probs=115.7
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l 308 (878)
+.++++++.++.+|..+. ++|++|++++|.+..++...|..+++|++|+|++|.+..+ |..|..+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 567888888888887654 6899999999988888887788999999999999999876 77889999999999999998
Q ss_pred CCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 309 GDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
+.+ ..+.++.+|++|++++|.++.++. .++.+. +|+.|++.+|.+. ......+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~------------~~~~~~~~ 149 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-----------NLNLLSLYDNKLQ------------TIAKGTFS 149 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCS------------CCCTTTTT
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-----------CCCEEECCCCcCC------------EECHHHHh
Confidence 876 447889999999999998887753 355443 5566688777665 12234566
Q ss_pred CCCCCCEEEeecCCC
Q 048809 386 NLSKLTSLEILIQDE 400 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~ 400 (878)
.+++|+.|++++|..
T Consensus 150 ~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCTTCCEEECCSSCE
T ss_pred CCCCCCEEEeCCCCc
Confidence 778888888887764
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=4.6e-13 Score=144.73 Aligned_cols=200 Identities=15% Similarity=0.145 Sum_probs=101.5
Q ss_pred ccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccc
Q 048809 603 LTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVEN 681 (878)
Q Consensus 603 ~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~ 681 (878)
+++|++|+|+++..++.++.+ ....+++|.++.+.++++++ ++...+.. +++|+.|++++|..
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~~~~f~~----l~~L~~L~l~~n~l----------- 116 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINPEAFQN----LPNLQYLLISNTGI----------- 116 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEECTTSBCC----CTTCCEEEEEEECC-----------
T ss_pred CCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccCchhhhh----cccccccccccccc-----------
Confidence 555555555555444444432 23345555655555556666 55555555 66666666666653
Q ss_pred cccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCc-cccc-CCCcEEEecccCCceEeechhhhhhhcc
Q 048809 682 GVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPS-STSF-QNLTTVAVDFCYGMINILTSSTAKSLVR 759 (878)
Q Consensus 682 ~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l-~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 759 (878)
...+ ...+.....+..|++.++..+..++.. +..+ ..++.|++++ ++++.++.. .+ ..++
T Consensus 117 ---------~~~~------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f-~~~~ 178 (350)
T 4ay9_X 117 ---------KHLP------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AF-NGTQ 178 (350)
T ss_dssp ---------SSCC------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SS-TTEE
T ss_pred ---------ccCC------chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hc-cccc
Confidence 1111 111122334555555555555554432 1222 2455566555 455555322 21 2345
Q ss_pred ceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccC
Q 048809 760 LKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSG 839 (878)
Q Consensus 760 L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~ 839 (878)
|++|.+++++.++.++... ...+++|+.|+++++ +++++|.+ .+.+|+.|.+.+|.+++.+|.
T Consensus 179 L~~l~l~~~n~l~~i~~~~-----------f~~l~~L~~LdLs~N-~l~~lp~~-----~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDV-----------FHGASGPVILDISRT-RIHSLPSY-----GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp EEEEECTTCTTCCCCCTTT-----------TTTEECCSEEECTTS-CCCCCCSS-----SCTTCCEEECTTCTTCCCCCC
T ss_pred hhHHhhccCCcccCCCHHH-----------hccCcccchhhcCCC-CcCccChh-----hhccchHhhhccCCCcCcCCC
Confidence 6666666556666555421 123556666666554 46666544 355566666666666666663
Q ss_pred CCccCCCcceeeccc
Q 048809 840 GELSTPNLRKVQLKQ 854 (878)
Q Consensus 840 ~~~~~~~L~~l~i~~ 854 (878)
...+++|+.+.+.+
T Consensus 242 -l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 -LEKLVALMEASLTY 255 (350)
T ss_dssp -TTTCCSCCEEECSC
T ss_pred -chhCcChhhCcCCC
Confidence 23455666665544
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=1.6e-13 Score=157.88 Aligned_cols=166 Identities=23% Similarity=0.293 Sum_probs=120.4
Q ss_pred ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809 225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD 304 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 304 (878)
.+..++.|+++++.+..++....+++|++|++++|.+..++. |..+++|++|+|++|.+..+| .+..+++|++|+|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 356678888888888888765578888888888888887776 688888888888888888776 68888888888888
Q ss_pred CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
+|.++.++.++.+++|+.|+|++|.++.+ ..++.+. +|+.|++++|.+. . ...+
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~-----------~L~~L~Ls~N~l~------------~--~~~l 171 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLT-----------KLDTLSLEDNQIS------------D--IVPL 171 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCT-----------TCSEEECCSSCCC------------C--CGGG
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc-hhhcccC-----------CCCEEECcCCcCC------------C--chhh
Confidence 88888887788888888888888887776 3455444 4455566666554 0 1115
Q ss_pred cCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809 385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI 420 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 420 (878)
..+++|+.|++++|.+..+| .+..+++|+.|++..
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 206 (605)
T ss_dssp TTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCS
T ss_pred ccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccC
Confidence 66666777777766666554 344666666666653
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=2.8e-13 Score=135.54 Aligned_cols=148 Identities=16% Similarity=0.291 Sum_probs=118.3
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCC-CchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEEEccCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKI-PDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l-~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~ 307 (878)
+.++++++.++.+|..+ .+.+++|++++|.+..+ +.++|..+++|++|+|++|.++.++. .|..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 58899999999988765 35678999999988887 45667999999999999999988765 78999999999999999
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
++.+ ..++++++|++|++++|.++.++ ..++.+. +|+.|++.+|.+. ...+..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~------------~~~~~~~ 149 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-----------SVRLLSLYDNQIT------------TVAPGAF 149 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-----------TCSEEECTTSCCC------------CBCTTTT
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-----------cCCEEECCCCcCC------------EECHHHh
Confidence 8876 45899999999999999888874 4455443 5566788888765 2334667
Q ss_pred cCCCCCCEEEeecCCCC
Q 048809 385 NNLSKLTSLEILIQDEK 401 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~ 401 (878)
..+++|+.|++++|...
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 78888888988888643
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=4.8e-13 Score=140.24 Aligned_cols=158 Identities=21% Similarity=0.376 Sum_probs=134.9
Q ss_pred CCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCC
Q 048809 219 SWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNL 298 (878)
Q Consensus 219 ~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 298 (878)
..+......++++|++++|.++.++....+++|++|++++|.+..++. +..+++|++|++++|.+..+ +.+..+++|
T Consensus 60 ~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L 136 (291)
T 1h6t_A 60 SVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQL 136 (291)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCC-GGGGGCTTC
T ss_pred cChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCC-hhhcCCCCC
Confidence 334445578899999999999998875589999999999999888875 69999999999999999887 468999999
Q ss_pred cEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809 299 QTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN 378 (878)
Q Consensus 299 ~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (878)
++|++++|.++.++.++++++|++|++++|.++.++. ++.+ ++|+.|++++|.+.
T Consensus 137 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l-----------~~L~~L~L~~N~i~------------- 191 (291)
T 1h6t_A 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGL-----------TKLQNLYLSKNHIS------------- 191 (291)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTC-----------TTCCEEECCSSCCC-------------
T ss_pred CEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCC-----------CccCEEECCCCcCC-------------
Confidence 9999999999988899999999999999999988876 5544 46677799988775
Q ss_pred cCcccccCCCCCCEEEeecCCCCCCCc
Q 048809 379 ASLHELNNLSKLTSLEILIQDEKTLPR 405 (878)
Q Consensus 379 ~~~~~L~~l~~L~~L~l~~~~~~~~~~ 405 (878)
.+..+..+++|+.|++++|.....|.
T Consensus 192 -~l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 192 -DLRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -BCGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred -CChhhccCCCCCEEECcCCcccCCcc
Confidence 13458899999999999998666554
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=3.2e-13 Score=139.22 Aligned_cols=151 Identities=27% Similarity=0.309 Sum_probs=123.3
Q ss_pred ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809 225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD 304 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 304 (878)
.+.++++|++++|.++.++....+++|++|++++|.+..++. |..+++|++|++++|.++.+|.... .+|++|+++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence 456789999999999988855588999999999998888887 6899999999999999988876444 899999999
Q ss_pred CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
+|.++.++.++++++|++|++++|.++.+| .++.+ ++|+.|++++|.+. ....+
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l-----------~~L~~L~L~~N~i~--------------~~~~l 168 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFL-----------SKLEVLDLHGNEIT--------------NTGGL 168 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGC-----------TTCCEEECTTSCCC--------------BCTTS
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCCh-HHccC-----------CCCCEEECCCCcCc--------------chHHh
Confidence 999988888999999999999999888876 45543 45667788888765 11567
Q ss_pred cCCCCCCEEEeecCCCCCCCc
Q 048809 385 NNLSKLTSLEILIQDEKTLPR 405 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~ 405 (878)
..+++|+.|++++|.....|.
T Consensus 169 ~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTCCCCCEEEEEEEEEECCCE
T ss_pred ccCCCCCEEeCCCCcccCCcc
Confidence 788899999999887665553
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=1.5e-13 Score=145.96 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=49.2
Q ss_pred CCCccEEEeecCCCC-CCCchhh-cCCCCCcEEEeeCCCCCCCCccccCC-----CCCcEEEccCCCCCCc--ccccCcc
Q 048809 248 CPQLKYFRIHNDHSL-KIPDNFF-TGMTELRVLDFTRMHLLALPSSLGLL-----QNLQTLSLDYCELGDM--AIIGDLK 318 (878)
Q Consensus 248 ~~~Lr~L~l~~~~~~-~l~~~~~-~~l~~Lr~L~Ls~~~i~~lp~~i~~L-----~~L~~L~L~~~~l~~l--~~i~~L~ 318 (878)
+++|++|++++|.+. .+|..+| ..+++|++|+|++|.+..+|..++.+ ++|++|++++|.++.+ ..+++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 556666666666554 4454433 56666666666666665555555554 5666666666665543 4566666
Q ss_pred cCcEEEeeCCCc
Q 048809 319 KLVILALRGSDM 330 (878)
Q Consensus 319 ~L~~L~l~~~~l 330 (878)
+|++|++++|.+
T Consensus 174 ~L~~L~Ls~N~l 185 (312)
T 1wwl_A 174 ALSTLDLSDNPE 185 (312)
T ss_dssp SCCEEECCSCTT
T ss_pred CCCEEECCCCCc
Confidence 666666666654
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=1.9e-13 Score=135.86 Aligned_cols=158 Identities=19% Similarity=0.363 Sum_probs=128.0
Q ss_pred cccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcE
Q 048809 224 DVLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQT 300 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~ 300 (878)
..+.++++|++++|.++.++... .+++|++|++++|.+..++...|..+++|++|++++|.++.+|.. +..+++|++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 35678999999999999888754 789999999999999999988889999999999999999988765 689999999
Q ss_pred EEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809 301 LSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR 377 (878)
Q Consensus 301 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 377 (878)
|++++|.++.+ ..++++++|++|++++|.++.+|.. ++++ ++|+.|++.+|.+.
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-----------~~L~~L~l~~N~~~------------ 161 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-----------TSLQYIWLHDNPWD------------ 161 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----------TTCCEEECCSCCBC------------
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC-----------CCccEEEecCCCee------------
Confidence 99999998876 4488999999999999999888765 4544 45667788877543
Q ss_pred ccCcccccCCCCCCEEEeecCCC-CCCCcchhccc
Q 048809 378 NASLHELNNLSKLTSLEILIQDE-KTLPRDLSFFK 411 (878)
Q Consensus 378 ~~~~~~L~~l~~L~~L~l~~~~~-~~~~~~~~~l~ 411 (878)
+.+++|+.|+++.+.. +.+|.+++.++
T Consensus 162 -------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 -------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 3456788888877653 46677665443
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=2.7e-13 Score=143.93 Aligned_cols=175 Identities=17% Similarity=0.139 Sum_probs=123.1
Q ss_pred CCCcEEEeeCCCCCC-CCCC---CCCCCccEEEeecCCCCCC----CchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCC
Q 048809 227 KDCTAISLNNSNINE-LPQG---FECPQLKYFRIHNDHSLKI----PDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQN 297 (878)
Q Consensus 227 ~~lr~l~l~~~~~~~-l~~~---~~~~~Lr~L~l~~~~~~~l----~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~ 297 (878)
.++++|++++|.+.. .|.. ..+++|++|++++|.+... +...+..+++|++|+|++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 348888888888765 3333 4578889999988866642 1223457888999999999887664 67788889
Q ss_pred CcEEEccCCCCCC---c---ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccc
Q 048809 298 LQTLSLDYCELGD---M---AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEG 371 (878)
Q Consensus 298 L~~L~L~~~~l~~---l---~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~ 371 (878)
|++|+|++|.+.. + ..++++++|++|++++|.++.+|.....+. ..+++|+.|++++|.+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~-------~~l~~L~~L~Ls~N~l~------ 237 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA-------AAGVQPHSLDLSHNSLR------ 237 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH-------HHTCCCSSEECTTSCCC------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH-------hcCCCCCEEECCCCCCC------
Confidence 9999999988642 2 234688889999999888877665321110 03356677799888776
Q ss_pred ccccccccCcccccC---CCCCCEEEeecCCCCCCCcchhcccCCceEEEEecc
Q 048809 372 VDGERRNASLHELNN---LSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGS 422 (878)
Q Consensus 372 ~~~~~~~~~~~~L~~---l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 422 (878)
...+..+.. +++|++|++++|....+|..+ .++|+.|+++.+.
T Consensus 238 ------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 238 ------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNR 283 (310)
T ss_dssp ------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCC
T ss_pred ------ccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCc
Confidence 112233333 479999999999988888876 3789998886443
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=1.4e-13 Score=141.85 Aligned_cols=166 Identities=20% Similarity=0.239 Sum_probs=137.6
Q ss_pred cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 305 (878)
+.++..+.+..+.++.++....+++|++|++++|.+..++ . +..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 3345566677778887775558899999999999999998 3 6899999999999999999987 99999999999999
Q ss_pred CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
|.++.++.+.. .+|++|++++|.++.+|. ++++ ++|+.|++++|.+. .+..+.
T Consensus 95 N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l-----------~~L~~L~Ls~N~i~--------------~~~~l~ 147 (263)
T 1xeu_A 95 NRLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHL-----------KNLEILSIRNNKLK--------------SIVMLG 147 (263)
T ss_dssp SCCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTC-----------TTCCEEECTTSCCC--------------BCGGGG
T ss_pred CccCCcCcccc-CcccEEEccCCccCCChh-hcCc-----------ccccEEECCCCcCC--------------CChHHc
Confidence 99998865666 999999999999988763 5544 46677799988776 124688
Q ss_pred CCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecc
Q 048809 386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGS 422 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 422 (878)
.+++|+.|++++|....+ ..+..+++|+.|+++.+.
T Consensus 148 ~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 899999999999998877 556688999999997543
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=4.1e-14 Score=152.41 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=55.9
Q ss_pred CcEEEeeCCCCCCCCCCC-CC--CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC--CCccccCCCCCcEEEc
Q 048809 229 CTAISLNNSNINELPQGF-EC--PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA--LPSSLGLLQNLQTLSL 303 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~-~~--~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L 303 (878)
.++++++++.+. +..+ .+ +++++|++.+|.+...+..+ ..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 567777766544 1111 22 56666666666544444443 356666666666666542 5555566666666666
Q ss_pred cCCCCCC--cccccCcccCcEEEeeCC-Ccc
Q 048809 304 DYCELGD--MAIIGDLKKLVILALRGS-DMK 331 (878)
Q Consensus 304 ~~~~l~~--l~~i~~L~~L~~L~l~~~-~l~ 331 (878)
++|.++. +..++++++|++|++++| .++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 6666542 245555666666666665 444
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=2.5e-12 Score=127.74 Aligned_cols=148 Identities=20% Similarity=0.328 Sum_probs=122.7
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~l 308 (878)
+.++..++.+..+|..+ .++|++|++++|.+..++..+|..+++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 56788888888888665 46999999999999999998889999999999999999988765 68999999999999998
Q ss_pred CCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809 309 GDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385 (878)
Q Consensus 309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 385 (878)
+.+ ..++++++|++|++++|.++.+|.. ++++ ++|+.|++.+|.+. ......+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~l~~N~l~------------~~~~~~~~ 145 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL-----------TQLKDLRLYQNQLK------------SVPDGVFD 145 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCS------------CCCTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC-----------CcCCEEECCCCccc------------eeCHHHhc
Confidence 876 4579999999999999999888765 4544 45667788888765 12234477
Q ss_pred CCCCCCEEEeecCCCC
Q 048809 386 NLSKLTSLEILIQDEK 401 (878)
Q Consensus 386 ~l~~L~~L~l~~~~~~ 401 (878)
.+++|+.|++++|...
T Consensus 146 ~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TCTTCCEEECCSCCBC
T ss_pred cCCCccEEEecCCCee
Confidence 8899999999988643
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=1.2e-12 Score=128.71 Aligned_cols=145 Identities=17% Similarity=0.276 Sum_probs=123.3
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC--cccccCcccCcEEE
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD--MAIIGDLKKLVILA 324 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--l~~i~~L~~L~~L~ 324 (878)
++++|++|++++|.+..+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++++++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 5789999999999999988 3 699999999999999887765 78999999999999999885 58899999999999
Q ss_pred eeCCCccc-chHhhcccccCcccccccccCCcEEEccCCC-CCccccccccccccccCcccccCCCCCCEEEeecCCCCC
Q 048809 325 LRGSDMKE-LVGEIGQLTQLRLLIAPILSRLEELYIGESP-IEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT 402 (878)
Q Consensus 325 l~~~~l~~-lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 402 (878)
+++|.++. .|..+++++ +|+.|++.+|. +. .+..+..+++|+.|++++|....
T Consensus 119 Ls~n~i~~~~~~~l~~l~-----------~L~~L~L~~n~~i~--------------~~~~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLP-----------KVNSIDLSYNGAIT--------------DIMPLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CCSSBCBGGGHHHHTTCS-----------SCCEEECCSCTBCC--------------CCGGGGGCSSCCEEECTTBCCCC
T ss_pred ecCCccCcHhHHHHhhCC-----------CCCEEEccCCCCcc--------------ccHhhcCCCCCCEEECCCCCCcC
Confidence 99998875 566677555 56677888886 43 12468889999999999999888
Q ss_pred CCcchhcccCCceEEEEe
Q 048809 403 LPRDLSFFKMLQRYRILI 420 (878)
Q Consensus 403 ~~~~~~~l~~L~~L~l~~ 420 (878)
++ .+..+++|+.|++..
T Consensus 174 ~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CT-TGGGCSSCCEEEECB
T ss_pred hH-HhccCCCCCEEEeeC
Confidence 77 666899999999863
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=4.6e-13 Score=154.14 Aligned_cols=185 Identities=22% Similarity=0.255 Sum_probs=147.5
Q ss_pred EEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc
Q 048809 232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM 311 (878)
Q Consensus 232 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l 311 (878)
+.+..+.+..+.....+++|+.|++++|.+..++. |..+++|++|+|++|.+..+|. +..+++|++|+|++|.++.+
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence 33444445544444478899999999999988874 6999999999999999999887 99999999999999999999
Q ss_pred ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCC
Q 048809 312 AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLT 391 (878)
Q Consensus 312 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 391 (878)
+.++.+++|++|+|++|.+..+|. ++. +++|+.|++++|.+. .+..+..+++|+
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~~-l~~-----------l~~L~~L~Ls~N~l~--------------~l~~l~~l~~L~ 156 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDING-LVH-----------LPQLESLYLGNNKIT--------------DITVLSRLTKLD 156 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCGG-GGG-----------CTTCSEEECCSSCCC--------------CCGGGGSCTTCS
T ss_pred hhhccCCCCCEEEecCCCCCCCcc-ccC-----------CCccCEEECCCCccC--------------CchhhcccCCCC
Confidence 899999999999999999888653 544 346677899988775 236788999999
Q ss_pred EEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCc
Q 048809 392 SLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDM 471 (878)
Q Consensus 392 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 471 (878)
.|++++|.+..++. +..+++|+.|+++.+..... + ....+++|+.|+++++...
T Consensus 157 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l------------------------~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 157 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL------------------------R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC------------------------G-GGTTCTTCSEEECCSEEEE
T ss_pred EEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC------------------------h-HHccCCCCCEEEccCCcCc
Confidence 99999999888776 77899999999864432111 0 1234788999999877543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=2.2e-12 Score=146.73 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=117.6
Q ss_pred ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809 225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD 304 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 304 (878)
+.++++.|++++|.++.+| ..+++|++|++++|.+..+|. |.. +|++|+|++|.++.+|. .+++|++|+++
T Consensus 78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 3567888888888888777 346788888888887777776 344 78888888888877777 57788888888
Q ss_pred CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
+|.++.++. .+++|++|++++|.++.+|. ++ ++|+.|++++|.+.. .+. +
T Consensus 149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~-------------~~L~~L~Ls~N~L~~-------------lp~-~ 198 (571)
T 3cvr_A 149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP-------------ESLEALDVSTNLLES-------------LPA-V 198 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC-------------TTCCEEECCSSCCSS-------------CCC-C
T ss_pred CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh-------------CCCCEEECcCCCCCc-------------hhh-H
Confidence 888776644 56788888888887777776 43 367888999987761 111 2
Q ss_pred cC-----CCCCCEEEeecCCCCCCCcchhcccCCceEEEEec
Q 048809 385 NN-----LSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIG 421 (878)
Q Consensus 385 ~~-----l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 421 (878)
.. ...|+.|++++|.+..+|.++..+++|+.|+++.+
T Consensus 199 ~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 199 PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp C--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS
T ss_pred HHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC
Confidence 22 22339999999999999998889999999998643
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=2.4e-12 Score=129.70 Aligned_cols=138 Identities=26% Similarity=0.385 Sum_probs=117.6
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-c
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-L 292 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i 292 (878)
.....|. .++.++++|++++|.++.++.. + .+++|++|++++|.+..+|...|..+++|++|+|++|.++.+|.. +
T Consensus 30 ~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 30 RHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence 3344443 4568899999999999988543 3 899999999999999999998899999999999999999998765 6
Q ss_pred cCCCCCcEEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809 293 GLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
..+++|++|+|++|.++.+ ..+.++.+|++|++++|.++.+|.. +..+ ++|+.|++.+|.+.
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL-----------SSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC-----------TTCCEEECTTSCBC
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCC-----------CCCCEEEeeCCCcc
Confidence 8999999999999999887 7899999999999999999988864 5544 45677789888765
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=4e-13 Score=144.59 Aligned_cols=174 Identities=13% Similarity=0.168 Sum_probs=120.7
Q ss_pred CCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCC--CCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCcEEE
Q 048809 227 KDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLK--IPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQTLS 302 (878)
Q Consensus 227 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~--l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~ 302 (878)
.+++++++.++.+...+... .+++|++|++++|.+.. ++ .++..+++|++|++++|.+. ..|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 56888888888877654444 78999999999986553 44 34689999999999999886 5678888999999999
Q ss_pred ccCC-CCCC--c-ccccCcccCcEEEeeCC-Cccc--chHhhcccccCcccccccccCCcEEEccCCCCCcccccccccc
Q 048809 303 LDYC-ELGD--M-AIIGDLKKLVILALRGS-DMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGE 375 (878)
Q Consensus 303 L~~~-~l~~--l-~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~ 375 (878)
+++| .++. + ..+.++++|++|++++| .++. ++..+++++ .+|+.|++.+|.....
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----------~~L~~L~l~~~~~~~~-------- 210 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS----------ETITQLNLSGYRKNLQ-------- 210 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC----------TTCCEEECCSCGGGSC--------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc----------cCCCEEEeCCCcccCC--------
Confidence 9999 5774 4 55888999999999999 8875 566566554 0445556666521100
Q ss_pred ccccCcccccCCCCCCEEEeecCCC--CCCCcchhcccCCceEEEEe
Q 048809 376 RRNASLHELNNLSKLTSLEILIQDE--KTLPRDLSFFKMLQRYRILI 420 (878)
Q Consensus 376 ~~~~~~~~L~~l~~L~~L~l~~~~~--~~~~~~~~~l~~L~~L~l~~ 420 (878)
....+..+..+++|+.|+++++.. ...+..+..+++|+.|++..
T Consensus 211 -~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 211 -KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp -HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred -HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 011233445666777777776662 23344555667777776643
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=5.1e-13 Score=141.76 Aligned_cols=172 Identities=16% Similarity=0.091 Sum_probs=136.4
Q ss_pred cccCCCcEEEeeCCCCCCCCCC------CCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC---CC--ccc
Q 048809 224 DVLKDCTAISLNNSNINELPQG------FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA---LP--SSL 292 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~~------~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~---lp--~~i 292 (878)
....++++|++++|.+...... ..+++|++|++++|.+..++...|+.+++|++|+|++|.+.. ++ ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 3467899999999998863321 158999999999999999988778999999999999999753 43 334
Q ss_pred cCCCCCcEEEccCCCCCCccc-----ccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCCCc
Q 048809 293 GLLQNLQTLSLDYCELGDMAI-----IGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPIEW 366 (878)
Q Consensus 293 ~~L~~L~~L~L~~~~l~~l~~-----i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~ 366 (878)
+.+++|++|++++|.++.++. ++++++|++|++++|.++.+ |..++.+. .+++|+.|++++|.+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--------~~~~L~~L~Ls~N~l~- 264 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM--------WSSALNSLNLSFAGLE- 264 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC--------CCTTCCCEECCSSCCC-
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc--------CcCcCCEEECCCCCCC-
Confidence 789999999999999987632 57889999999999999886 77776654 2346788899888776
Q ss_pred cccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809 367 GKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL 419 (878)
Q Consensus 367 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 419 (878)
..+..+. ++|+.|++++|....+|. ...+++|+.|+++
T Consensus 265 ------------~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 265 ------------QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLD 302 (310)
T ss_dssp ------------SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECS
T ss_pred ------------chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECc
Confidence 1223332 689999999999888765 4578888888874
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=2.4e-12 Score=128.79 Aligned_cols=137 Identities=23% Similarity=0.401 Sum_probs=116.2
Q ss_pred CCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-cc
Q 048809 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LG 293 (878)
Q Consensus 217 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~ 293 (878)
....|. .++.+++.|++++|.++.++.. + .+++|++|++++|.+..++.+.|..+++|++|+|++|.++.+|.. +.
T Consensus 23 l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 23 LTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp CSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 344443 4567899999999999998863 3 789999999999999998777789999999999999999999876 58
Q ss_pred CCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809 294 LLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 294 ~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
.+++|++|+|++|.++.+ ..+..+.+|++|++++|.++.+|.+ +..+ ++|+.|++.+|.+.
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-----------RAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----------TTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC-----------CCCCEEEeCCCCcC
Confidence 999999999999999875 6799999999999999999988864 5544 45677788888665
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=1.4e-12 Score=141.59 Aligned_cols=169 Identities=19% Similarity=0.286 Sum_probs=123.1
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhc-CCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFT-GMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~-~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 307 (878)
+.++++++.++.+|..+ .+.+++|++++|.+..++...|. .+.+|++|+|++|.|..+| ..|..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 57888888888888755 35688899999988888887777 8889999999999888776 468888999999999998
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 384 (878)
++.+ ..+.++.+|++|++++|.++.++ ..|.++. +|+.|++++|.+.... ......+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----------~L~~L~L~~N~l~~l~---------~~~~~~~ 159 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----------QLQKLYLSQNQISRFP---------VELIKDG 159 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----------TCCEEECCSSCCCSCC---------GGGTC--
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----------cCCEEECCCCcCCeeC---------HHHhcCc
Confidence 8765 45888899999999988887764 4455444 5566688887765111 0112223
Q ss_pred cCCCCCCEEEeecCCCCCCCc-chhcccC--CceEEEE
Q 048809 385 NNLSKLTSLEILIQDEKTLPR-DLSFFKM--LQRYRIL 419 (878)
Q Consensus 385 ~~l~~L~~L~l~~~~~~~~~~-~~~~l~~--L~~L~l~ 419 (878)
..+++|+.|++++|.+..+|. .+..++. ++.|++.
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 678899999999998888874 3445554 3666665
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=7.4e-14 Score=153.43 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=33.1
Q ss_pred ccccceEEecCcCCccc----ccccCcCCCCCCCcEEEEccCCCceE-----Eeeccccccccc-Ccccccceeeccccc
Q 048809 457 LKGIKDLCLGGSLDMKS----VLYGSDGEGFPQLKRLEVVKNSNLLC-----VVDTVDRATALT-TAFPVLESLLLRHLS 526 (878)
Q Consensus 457 l~~L~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~-~~~~~L~~L~L~~~~ 526 (878)
+++|++|+++++..... +...+....+++|++|+++++. +.. ++. .. ..+++|+.|+++++.
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-------~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-------VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-------HHHHHCTTCCEEECTTSB
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-------HHHhcCCCceEEEccCCc
Confidence 46666777766653221 1111211236778888887764 222 110 12 346788888887753
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=8.2e-14 Score=153.08 Aligned_cols=272 Identities=14% Similarity=0.120 Sum_probs=160.4
Q ss_pred CCCCCC-CCCCccEEEeecCCCCCCCc----hhhcCCCCCcEEEeeCCCCCC----CCccc-------cCCCCCcEEEcc
Q 048809 241 ELPQGF-ECPQLKYFRIHNDHSLKIPD----NFFTGMTELRVLDFTRMHLLA----LPSSL-------GLLQNLQTLSLD 304 (878)
Q Consensus 241 ~l~~~~-~~~~Lr~L~l~~~~~~~l~~----~~~~~l~~Lr~L~Ls~~~i~~----lp~~i-------~~L~~L~~L~L~ 304 (878)
.++..+ .+++|++|++++|.+..... ..|.++++|++|+|++|.+.. +|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344433 57888999998886554321 225688899999999876653 34444 688999999999
Q ss_pred CCCCCC-----c-ccccCcccCcEEEeeCCCcccch-Hhhcc-cccCccc-ccccccCCcEEEccCCCCCcccccccccc
Q 048809 305 YCELGD-----M-AIIGDLKKLVILALRGSDMKELV-GEIGQ-LTQLRLL-IAPILSRLEELYIGESPIEWGKVEGVDGE 375 (878)
Q Consensus 305 ~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~-L~~L~~L-ip~~l~~L~~L~l~~~~~~~~~~~~~~~~ 375 (878)
+|.+.. + ..+.++++|++|++++|.+...+ ..+.. +..+... +....++|+.|++.+|.+....
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~------- 175 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS------- 175 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG-------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH-------
Confidence 998775 3 56788899999999998775322 22222 1111000 0001156777888887664110
Q ss_pred ccccCcccccCCCCCCEEEeecCCCCC------CCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCcccc
Q 048809 376 RRNASLHELNNLSKLTSLEILIQDEKT------LPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICL 449 (878)
Q Consensus 376 ~~~~~~~~L~~l~~L~~L~l~~~~~~~------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~ 449 (878)
.......+..+++|+.|++++|.+.. .+..+.
T Consensus 176 -~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~----------------------------------------- 213 (386)
T 2ca6_A 176 -MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA----------------------------------------- 213 (386)
T ss_dssp -HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-----------------------------------------
T ss_pred -HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-----------------------------------------
Confidence 01122456677788888888876541 111221
Q ss_pred chhHHhhccccceEEecCcCCc----ccccccCcCCCCCCCcEEEEccCCCceEEeeccccccccc--Ccccccceeecc
Q 048809 450 NGGHIMQLKGIKDLCLGGSLDM----KSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALT--TAFPVLESLLLR 523 (878)
Q Consensus 450 ~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~~~~~L~~L~L~ 523 (878)
.+++|+.|+++++... ..+...+ ..+++|++|+++++. +...... ...... ..+++|+.|+++
T Consensus 214 ------~~~~L~~L~Ls~n~l~~~g~~~l~~~l--~~~~~L~~L~L~~n~-i~~~~~~--~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 214 ------YCQELKVLDLQDNTFTHLGSSALAIAL--KSWPNLRELGLNDCL-LSARGAA--AVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp ------GCTTCCEEECCSSCCHHHHHHHHHHHG--GGCTTCCEEECTTCC-CCHHHHH--HHHHHHHTCSSCCCCEEECC
T ss_pred ------cCCCccEEECcCCCCCcHHHHHHHHHH--ccCCCcCEEECCCCC-CchhhHH--HHHHHHhhccCCCeEEEECc
Confidence 2456666666665432 2222222 357899999999875 3221000 000011 348999999999
Q ss_pred ccccccc-----eecCCCCc-cccCCccEEEeecCCCcccccc--hhhhhhccCccEEEEec
Q 048809 524 HLSNLEK-----ICRGPLAA-ESFCKVKDIRVEWCDKLKNVFP--LVIGRGLQQLQSIEVTG 577 (878)
Q Consensus 524 ~~~~L~~-----~~~~~~~~-~~l~~L~~L~l~~c~~L~~l~~--~~~~~~l~~L~~L~l~~ 577 (878)
++. ++. ++. .+ ..+++|+.|++.+| .+....+ ......+++++.+++..
T Consensus 283 ~n~-i~~~g~~~l~~---~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 283 YNE-IELDAVRTLKT---VIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp SSC-CBHHHHHHHHH---HHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred CCc-CCHHHHHHHHH---HHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence 864 443 211 12 45799999999996 4544432 22334566666555554
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=5.5e-12 Score=136.78 Aligned_cols=165 Identities=20% Similarity=0.258 Sum_probs=128.3
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCCC---CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-c
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQGF---ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-S 291 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~ 291 (878)
.+...|. .++..+++|++++|.++.++... .+++|++|++++|.+..++...|..+++|++|+|++|.+..+|. .
T Consensus 29 ~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 29 QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp CCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence 3444443 45677899999999999887653 78999999999999999988878999999999999999988865 5
Q ss_pred ccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHhh-cccccCcccccccccCCcEEEccCCCCCccc
Q 048809 292 LGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGEI-GQLTQLRLLIAPILSRLEELYIGESPIEWGK 368 (878)
Q Consensus 292 i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~ 368 (878)
|..+.+|++|+|++|.++.+ ..+.++.+|++|++++|.++.+|..+ ..+. .+++|+.|++++|.+.
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~--------~l~~L~~L~L~~N~l~--- 176 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN--------KLPKLMLLDLSSNKLK--- 176 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------------CTTCCEEECCSSCCC---
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc--------cCCcCCEEECCCCCCC---
Confidence 78999999999999998865 67899999999999999999988764 1111 3456778899888776
Q ss_pred cccccccccccCcccccCCCC--CCEEEeecCCCC
Q 048809 369 VEGVDGERRNASLHELNNLSK--LTSLEILIQDEK 401 (878)
Q Consensus 369 ~~~~~~~~~~~~~~~L~~l~~--L~~L~l~~~~~~ 401 (878)
......+..+++ ++.|++.+|...
T Consensus 177 ---------~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 ---------KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ---------CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ---------ccCHHHhhhccHhhcceEEecCCCcc
Confidence 122345555655 477888888643
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=4.7e-12 Score=126.63 Aligned_cols=131 Identities=21% Similarity=0.326 Sum_probs=113.2
Q ss_pred cccCCCcEEEeeCCCCCCCCC-C-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCc
Q 048809 224 DVLKDCTAISLNNSNINELPQ-G-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQ 299 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~-~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~ 299 (878)
.++..+++|++++|.++.++. . + .+++|++|++++|.+..++...|..+++|++|+|++|.++.+|. .+..+++|+
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence 456778999999999998843 2 3 89999999999999999998888999999999999999998865 489999999
Q ss_pred EEEccCCCCCCc--ccccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCCC
Q 048809 300 TLSLDYCELGDM--AIIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 300 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
+|+|++|.++.+ ..+.++.+|++|++++|.++.+ |..+..+. +|+.|++.+|.+.
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~ 166 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-----------SLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-----------TCCEEECCSCCEE
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC-----------CCCEEEecCcCCc
Confidence 999999999875 7799999999999999999987 55566554 5667788888765
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=3.8e-12 Score=121.54 Aligned_cols=119 Identities=21% Similarity=0.268 Sum_probs=103.0
Q ss_pred cCCCcEEEeeCCCCC--CCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC-CCccccCCCCCcEE
Q 048809 226 LKDCTAISLNNSNIN--ELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA-LPSSLGLLQNLQTL 301 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L 301 (878)
+.++++|++++|.+. .+|..+ .+++|++|++++|.+..+ ..|..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 567999999999998 888875 899999999999988888 347999999999999999987 77777889999999
Q ss_pred EccCCCCCCc---ccccCcccCcEEEeeCCCcccchH----hhcccccCccc
Q 048809 302 SLDYCELGDM---AIIGDLKKLVILALRGSDMKELVG----EIGQLTQLRLL 346 (878)
Q Consensus 302 ~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L 346 (878)
++++|.++.+ ..++.+++|++|++++|.++.+|. .+..+++|++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 9999998874 678999999999999999998886 56665544443
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=2.2e-12 Score=120.50 Aligned_cols=119 Identities=23% Similarity=0.255 Sum_probs=105.1
Q ss_pred cCCCcEEEeeCCCCC--CCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC-CCccccCCCCCcEE
Q 048809 226 LKDCTAISLNNSNIN--ELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA-LPSSLGLLQNLQTL 301 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L 301 (878)
+.++++|++++|.++ .+|..+ .+++|++|++++|.+..+ ..|..+++|++|++++|.+.. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467999999999998 788775 899999999999988888 447999999999999999987 78888889999999
Q ss_pred EccCCCCCCc---ccccCcccCcEEEeeCCCcccchH----hhcccccCccc
Q 048809 302 SLDYCELGDM---AIIGDLKKLVILALRGSDMKELVG----EIGQLTQLRLL 346 (878)
Q Consensus 302 ~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L 346 (878)
++++|.++.+ ..++.+++|++|++++|.++.+|. .++.+++|++|
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 9999999874 789999999999999999988876 57777777665
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=3.7e-12 Score=121.60 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=107.9
Q ss_pred CCCccEEEeecCCCC--CCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC-c-ccccCcccCcEE
Q 048809 248 CPQLKYFRIHNDHSL--KIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD-M-AIIGDLKKLVIL 323 (878)
Q Consensus 248 ~~~Lr~L~l~~~~~~--~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-l-~~i~~L~~L~~L 323 (878)
.++|++|++++|.+. .+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..++++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999877 78765 58999999999999999888 788999999999999999886 5 556679999999
Q ss_pred EeeCCCcccch--HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCC
Q 048809 324 ALRGSDMKELV--GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK 401 (878)
Q Consensus 324 ~l~~~~l~~lp--~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 401 (878)
++++|.++.+| ..++++ ++|+.|++.+|.+.... ......+..+++|+.|+++.+...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l-----------~~L~~L~l~~N~l~~~~---------~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKL-----------ECLKSLDLFNCEVTNLN---------DYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSC-----------SCCCEEECCSSGGGTST---------THHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcC-----------CCCCEEEeeCCcCcchH---------HHHHHHHHhCccCcEecCCCCChh
Confidence 99999998876 445544 45667788888665100 001136788899999999998887
Q ss_pred CCCcc
Q 048809 402 TLPRD 406 (878)
Q Consensus 402 ~~~~~ 406 (878)
.+|.+
T Consensus 161 ~~~~~ 165 (168)
T 2ell_A 161 EAPDS 165 (168)
T ss_dssp BCCSS
T ss_pred hcccc
Confidence 77754
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=1.4e-11 Score=120.33 Aligned_cols=124 Identities=18% Similarity=0.359 Sum_probs=104.5
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCch-hhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDN-FFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCE 307 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~-~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 307 (878)
+.++++++.++++|..+. +++++|++++|.+..++.. +|..+++|++|+|++|.++.+ |..|+.+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 688999999999988663 4999999999999888864 579999999999999999877 7889999999999999999
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCCC
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
++.+ ..++++++|++|++++|.++.+ |..++.+. +|+.|++.+|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----------SLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----------TCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-----------CCCEEEeCCCCcc
Confidence 9865 5589999999999999988876 45566544 5666788888665
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=3.6e-11 Score=136.72 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=126.2
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCC
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLL 295 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L 295 (878)
.....+ ..+.++++|++++|.++.+|. +. .+|++|++++|.+..+|. .+++|++|++++|.++.+|. .+
T Consensus 91 ~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~-~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l 159 (571)
T 3cvr_A 91 ALISLP--ELPASLEYLDACDNRLSTLPE-LP-ASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE---LP 159 (571)
T ss_dssp CCSCCC--CCCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---CC
T ss_pred CCcccc--cccCCCCEEEccCCCCCCcch-hh-cCCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC---cC
Confidence 334444 567899999999999999988 42 399999999999999987 68999999999999999987 67
Q ss_pred CCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccc
Q 048809 296 QNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGE 375 (878)
Q Consensus 296 ~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~ 375 (878)
++|++|+|++|.++.++.++ .+|++|++++|.++.+|. +.. +|.. ....|+.|++++|.+.
T Consensus 160 ~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~----~~~~L~~L~Ls~N~l~---------- 220 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA-VPV--RNHH----SEETEIFFRCRENRIT---------- 220 (571)
T ss_dssp TTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC--------------CCEEEECCSSCCC----------
T ss_pred CCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh-HHH--hhhc----ccccceEEecCCCcce----------
Confidence 89999999999998874466 999999999999999888 654 3311 2234588999999876
Q ss_pred ccccCcccccCCCCCCEEEeecCCCCC-CCcch
Q 048809 376 RRNASLHELNNLSKLTSLEILIQDEKT-LPRDL 407 (878)
Q Consensus 376 ~~~~~~~~L~~l~~L~~L~l~~~~~~~-~~~~~ 407 (878)
..+..+..+++|+.|++++|.... .|..+
T Consensus 221 ---~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 221 ---HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp ---CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred ---ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 345667789999999999998653 34433
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=6.9e-12 Score=120.70 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=102.1
Q ss_pred cCCCcEEEeeCCCCCCCCCCCCCC-CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccc-cCCCCCcEEEc
Q 048809 226 LKDCTAISLNNSNINELPQGFECP-QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSL-GLLQNLQTLSL 303 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L 303 (878)
+.++++|++++|.++.++....+. +|++|++++|.+..++ .|..+++|++|++++|.+..+|..+ +.+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 567899999999999997655555 9999999999888883 3799999999999999999998766 89999999999
Q ss_pred cCCCCCCc-c--cccCcccCcEEEeeCCCcccchHh----hcccccCccc
Q 048809 304 DYCELGDM-A--IIGDLKKLVILALRGSDMKELVGE----IGQLTQLRLL 346 (878)
Q Consensus 304 ~~~~l~~l-~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L 346 (878)
++|.++.+ . .++.+++|++|++++|.+..+|.. ++.+++|++|
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcccee
Confidence 99999876 3 689999999999999999888875 6665554444
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=5.3e-11 Score=114.64 Aligned_cols=106 Identities=22% Similarity=0.394 Sum_probs=83.9
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~l 308 (878)
+.+++.++.+..+|..+ .++|++|++++|.+..++...|..+++|++|++++|.++.+|.. ++.+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 56777788888777544 36888888888888888877778888888888888888877654 57888888888888888
Q ss_pred CCc--ccccCcccCcEEEeeCCCcccchHh
Q 048809 309 GDM--AIIGDLKKLVILALRGSDMKELVGE 336 (878)
Q Consensus 309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~~ 336 (878)
+.+ ..++++.+|++|++++|.++.+|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 765 3467888888888888888877765
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=2.8e-11 Score=118.11 Aligned_cols=123 Identities=24% Similarity=0.415 Sum_probs=103.6
Q ss_pred cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCC
Q 048809 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l 308 (878)
+.++++++.++.+|..+ .++|++|++++|.+..+|. .|..+++|++|+|++|.|+.++ ..|..+++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 57889999999998765 3689999999999999995 4699999999999999998886 5689999999999999998
Q ss_pred CCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809 309 GDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
+.+ ..++++++|++|++++|.++.+|.+ +..+. +|+.|++.+|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS-----------ALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-----------TCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc-----------cccEEEeCCCCee
Confidence 876 5699999999999999999988875 55444 5566788877654
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=9.7e-13 Score=142.93 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=43.6
Q ss_pred ccEEEeecCCCCCCCc----hhhcCCC-CCcEEEeeCCCCCCC-CccccCC-----CCCcEEEccCCCCCCc--cc----
Q 048809 251 LKYFRIHNDHSLKIPD----NFFTGMT-ELRVLDFTRMHLLAL-PSSLGLL-----QNLQTLSLDYCELGDM--AI---- 313 (878)
Q Consensus 251 Lr~L~l~~~~~~~l~~----~~~~~l~-~Lr~L~Ls~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l~~l--~~---- 313 (878)
|++|++++|.+...+. ..|.+++ +|++|+|++|.+... +..+..+ ++|++|+|++|.++.. ..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 6666666665555553 3445555 566666666655433 3334332 5566666666655432 22
Q ss_pred ccCc-ccCcEEEeeCCCcccch
Q 048809 314 IGDL-KKLVILALRGSDMKELV 334 (878)
Q Consensus 314 i~~L-~~L~~L~l~~~~l~~lp 334 (878)
+..+ ++|++|++++|.++..+
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHH
Confidence 2333 55666666666554433
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=1.3e-12 Score=141.95 Aligned_cols=158 Identities=13% Similarity=0.221 Sum_probs=90.6
Q ss_pred cCCCcEEEeeCCCCCCCCC-----CC-CCC-CccEEEeecCCCCCCCchhhcCC-----CCCcEEEeeCCCCCCCC-cc-
Q 048809 226 LKDCTAISLNNSNINELPQ-----GF-ECP-QLKYFRIHNDHSLKIPDNFFTGM-----TELRVLDFTRMHLLALP-SS- 291 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~-----~~-~~~-~Lr~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~Ls~~~i~~lp-~~- 291 (878)
+.++++|++++|.++..+. .+ .++ +|++|++++|.+.......|..+ ++|++|+|++|.+...+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4457777777777766653 22 456 77777777776666544444443 77777777777776443 22
Q ss_pred ---ccCC-CCCcEEEccCCCCCCc--cc----ccC-cccCcEEEeeCCCccc-----chHhhcccccCcccccccccCCc
Q 048809 292 ---LGLL-QNLQTLSLDYCELGDM--AI----IGD-LKKLVILALRGSDMKE-----LVGEIGQLTQLRLLIAPILSRLE 355 (878)
Q Consensus 292 ---i~~L-~~L~~L~L~~~~l~~l--~~----i~~-L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~Lip~~l~~L~ 355 (878)
+..+ ++|++|++++|.++.. .. +.. .++|++|++++|.++. ++..+..+. .+|+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~----------~~L~ 170 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP----------ANVN 170 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC----------TTCC
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC----------cccc
Confidence 3444 6777777777776543 22 333 2577777777776652 233232211 2566
Q ss_pred EEEccCCCCCccccccccccccccCcccccCC-CCCCEEEeecCCCC
Q 048809 356 ELYIGESPIEWGKVEGVDGERRNASLHELNNL-SKLTSLEILIQDEK 401 (878)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~ 401 (878)
.|++++|.+... ........+... ++|+.|++++|.+.
T Consensus 171 ~L~Ls~n~l~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 171 SLNLRGNNLASK--------NCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp EEECTTSCGGGS--------CHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred EeeecCCCCchh--------hHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 667777655410 001112234444 46777777766544
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=4.5e-11 Score=114.39 Aligned_cols=112 Identities=21% Similarity=0.323 Sum_probs=98.9
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCC
Q 048809 229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCE 307 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 307 (878)
.+.++++++.+..+|..+. ++|++|++++|.+..++...|.++++|++|+|++|.++.+|.. +..+++|++|+|++|.
T Consensus 14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3689999999999998764 8999999999999999887889999999999999999999876 5899999999999999
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccchHhhcccc
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKELVGEIGQLT 341 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~ 341 (878)
++.+ ..++++.+|++|++++|.+...+.++..|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 9876 349999999999999998887776655544
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.7e-11 Score=114.30 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=53.5
Q ss_pred CCccEEEeecCCCC--CCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC-c-ccccCcccCcEEE
Q 048809 249 PQLKYFRIHNDHSL--KIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD-M-AIIGDLKKLVILA 324 (878)
Q Consensus 249 ~~Lr~L~l~~~~~~--~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-l-~~i~~L~~L~~L~ 324 (878)
++|++|++++|.+. .+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..++++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56667777766555 55543 46666777777777766665 556666677777777766655 4 4445566677777
Q ss_pred eeCCCcccch
Q 048809 325 LRGSDMKELV 334 (878)
Q Consensus 325 l~~~~l~~lp 334 (878)
+++|.++.+|
T Consensus 95 ls~N~i~~~~ 104 (149)
T 2je0_A 95 LSGNKIKDLS 104 (149)
T ss_dssp CTTSCCCSHH
T ss_pred CCCCcCCChH
Confidence 7666666544
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=1.9e-11 Score=144.58 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=93.1
Q ss_pred cCCCcEEEeeCCCCCCCCCCC-CCCCccEEEe-----ecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCc
Q 048809 226 LKDCTAISLNNSNINELPQGF-ECPQLKYFRI-----HNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQ 299 (878)
Q Consensus 226 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l-----~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~ 299 (878)
...++++++.++.+..++... ...+|+.+.+ ..|.+. ++.+.|..+.+|++|+|++|.+..+|..+..+++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 345788889888877765443 3334444333 333333 455667999999999999999999999999999999
Q ss_pred EEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809 300 TLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN 378 (878)
Q Consensus 300 ~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (878)
+|+|++|.++.+ ..+++|++|++|+|++|.++.+|..|++|.+ |+.|++.+|.+.
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~-----------L~~L~L~~N~l~------------- 306 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ-----------LKYFYFFDNMVT------------- 306 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT-----------CSEEECCSSCCC-------------
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC-----------CCEEECCCCCCC-------------
Confidence 999999998876 7799999999999999999999988886654 556688887664
Q ss_pred cCcccccCCCCCCEEEeecCCCCCC
Q 048809 379 ASLHELNNLSKLTSLEILIQDEKTL 403 (878)
Q Consensus 379 ~~~~~L~~l~~L~~L~l~~~~~~~~ 403 (878)
..+..++++++|+.|+|++|.....
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred ccChhhhcCCCccEEeCCCCccCCC
Confidence 3455688899999999999987644
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=4.6e-11 Score=116.57 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=103.4
Q ss_pred cEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc--ccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeC
Q 048809 252 KYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS--LGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRG 327 (878)
Q Consensus 252 r~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~ 327 (878)
++++++++.+..+|..++ .+|++|++++|.+..+|.. ++.+++|++|+|++|.++.+ ..++++.+|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999999999998653 3899999999999988764 89999999999999999875 6799999999999999
Q ss_pred CCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCC
Q 048809 328 SDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK 401 (878)
Q Consensus 328 ~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 401 (878)
|.++.++.. ++.+ ++|+.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus 88 N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGL-----------HQLKTLNLYDNQIS------------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTC-----------TTCCEEECCSSCCC------------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCC-----------CCCCEEECCCCcCC------------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999887764 5544 45677788888776 234567788899999999988754
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=8.6e-11 Score=114.62 Aligned_cols=115 Identities=22% Similarity=0.364 Sum_probs=101.0
Q ss_pred cCCCCCCccccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-cccc
Q 048809 216 PLTSWPDKDVLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLG 293 (878)
Q Consensus 216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~ 293 (878)
.....|. .++.++++|++++|.++.+|..+ .+++|++|++++|.+..++...|..+++|++|+|++|.++.+| ..|.
T Consensus 21 ~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 21 GLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence 3444443 35678999999999999998666 8999999999999999999888999999999999999999886 4689
Q ss_pred CCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcc
Q 048809 294 LLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMK 331 (878)
Q Consensus 294 ~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~ 331 (878)
.+++|++|+|++|.++.+ ..+..+.+|++|++++|.+.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999999999999999876 46899999999999998664
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.8e-10 Score=110.89 Aligned_cols=115 Identities=23% Similarity=0.399 Sum_probs=100.8
Q ss_pred cccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcE
Q 048809 224 DVLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQT 300 (878)
Q Consensus 224 ~~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~ 300 (878)
..+.++++|++++|.++.++... .+++|++|++++|.+..++...|..+++|++|++++|.++.+|.. +..+++|++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 45678999999999999988754 789999999999999999998889999999999999999988765 689999999
Q ss_pred EEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHhhc
Q 048809 301 LSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGEIG 338 (878)
Q Consensus 301 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~ 338 (878)
|++++|.++.+ ..+.++++|++|++++|.+...+..+.
T Consensus 105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~ 144 (177)
T 2o6r_A 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 144 (177)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred EECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHH
Confidence 99999998876 446889999999999998876555433
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=1.1e-11 Score=119.39 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=89.7
Q ss_pred CCCCCCccEEEeecCCCCCCCchhhcCCC-CCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-cc-ccCcccCc
Q 048809 245 GFECPQLKYFRIHNDHSLKIPDNFFTGMT-ELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AI-IGDLKKLV 321 (878)
Q Consensus 245 ~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~-i~~L~~L~ 321 (878)
...+++|++|++++|.+..+|. + ..+. +|++|++++|.++.+ ..++.+++|++|++++|.++.+ +. ++.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~-~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-L-GATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-G-GGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-h-hhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3467788888888888777764 3 4444 888888888888877 6788888888888888888765 33 48888888
Q ss_pred EEEeeCCCcccchH--hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCC
Q 048809 322 ILALRGSDMKELVG--EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQD 399 (878)
Q Consensus 322 ~L~l~~~~l~~lp~--~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 399 (878)
+|++++|.++.+|. .++.+ ++|+.|++.+|.+.... ......+..+++|+.|+++.+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l-----------~~L~~L~l~~N~i~~~~---------~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASL-----------KSLTYLCILRNPVTNKK---------HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGC-----------TTCCEEECCSSGGGGST---------THHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcC-----------CCCCEEEecCCCCCCcH---------hHHHHHHHHCCccceeCCCcCC
Confidence 88888888877775 34433 34555566666543000 0001125566667776666554
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1e-10 Score=111.47 Aligned_cols=108 Identities=21% Similarity=0.343 Sum_probs=94.7
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCC
Q 048809 229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCE 307 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 307 (878)
.+.++++++.++.+|..+ .++|++|++++|.+..++...|..+++|++|+|++|.++.+|.. +..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 468999999999999876 48999999999999999888789999999999999999998765 5899999999999999
Q ss_pred CCCc--ccccCcccCcEEEeeCCCcccchHhh
Q 048809 308 LGDM--AIIGDLKKLVILALRGSDMKELVGEI 337 (878)
Q Consensus 308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i 337 (878)
++.+ ..+.++++|++|++++|.+.-.+..+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 9876 45899999999999999776555433
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.3e-10 Score=132.91 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=59.4
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCC
Q 048809 229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCEL 308 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l 308 (878)
++.|++++|.++.+|....+++|++|++++|.+..+|.. |+.+++|++|+|++|.++.+| .++.+++|++|+|++|.+
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 555666665555555533555566666666655555554 355566666666666555555 555566666666666555
Q ss_pred CC---cccccCcccCcEEEeeCCCcccchH
Q 048809 309 GD---MAIIGDLKKLVILALRGSDMKELVG 335 (878)
Q Consensus 309 ~~---l~~i~~L~~L~~L~l~~~~l~~lp~ 335 (878)
+. +..++++++|++|++++|.++.+|.
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 43 2455556666666666655555544
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=6e-11 Score=140.24 Aligned_cols=95 Identities=23% Similarity=0.262 Sum_probs=50.0
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-ccccCcccCcEEEe
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILAL 325 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l 325 (878)
.+++|++|++++|.+..+|..+| ++++|++|+|++|.++.+|..|++|++|++|+|++|.++.+ ..+++|.+|++|+|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence 44555555555555555555442 45555555555555555555555555555555555555443 44555555555555
Q ss_pred eCCCcccchHhhccccc
Q 048809 326 RGSDMKELVGEIGQLTQ 342 (878)
Q Consensus 326 ~~~~l~~lp~~i~~L~~ 342 (878)
++|.++.+|.+|++|.+
T Consensus 301 ~~N~l~~lp~~~~~l~~ 317 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCN 317 (727)
T ss_dssp CSSCCCCCCSSTTSCTT
T ss_pred CCCCCCccChhhhcCCC
Confidence 55555555554444443
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.4e-10 Score=132.65 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=86.8
Q ss_pred CCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCccccccccc
Q 048809 274 ELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILS 352 (878)
Q Consensus 274 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~ 352 (878)
.|++|+|++|.++.+|. ++.+++|++|+|++|.++.+ ..++++++|++|++++|.++.+| .+++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~----------- 508 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLP----------- 508 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS-----------
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCC-----------
Confidence 47888888888888876 88888888888888887765 67888888888888888887777 566544
Q ss_pred CCcEEEccCCCCCccccccccccccccC-cccccCCCCCCEEEeecCCCCCCCcchh----cccCCceEE
Q 048809 353 RLEELYIGESPIEWGKVEGVDGERRNAS-LHELNNLSKLTSLEILIQDEKTLPRDLS----FFKMLQRYR 417 (878)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~L~~L~l~~~~~~~~~~~~~----~l~~L~~L~ 417 (878)
+|+.|++++|.+. ... +..++.+++|+.|++++|.....|.... .+++|+.|+
T Consensus 509 ~L~~L~Ls~N~l~------------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 509 RLQELLLCNNRLQ------------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCEEECCSSCCC------------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCcEEECCCCCCC------------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4455677777665 122 5677788888888888887766655432 467777764
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=3.1e-12 Score=125.77 Aligned_cols=123 Identities=19% Similarity=0.354 Sum_probs=85.8
Q ss_pred CcEEEeeCC--CCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809 229 CTAISLNNS--NINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305 (878)
Q Consensus 229 lr~l~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 305 (878)
++...+.+. .++.+|..+ .+++|++|++++|.+..+| .|..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 455555543 455555444 6778888888888777777 35778888888888888877877777777888888888
Q ss_pred CCCCCcccccCcccCcEEEeeCCCcccchH--hhcccccCcccccccccCCcEEEccCCCC
Q 048809 306 CELGDMAIIGDLKKLVILALRGSDMKELVG--EIGQLTQLRLLIAPILSRLEELYIGESPI 364 (878)
Q Consensus 306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~Lip~~l~~L~~L~l~~~~~ 364 (878)
|.++.++.++++++|++|++++|.++.+|. .+++++ +|+.|++.+|.+
T Consensus 103 N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-----------~L~~L~l~~N~l 152 (198)
T 1ds9_A 103 NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD-----------KLEDLLLAGNPL 152 (198)
T ss_dssp EECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTT-----------TCSEEEECSCHH
T ss_pred CcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCC-----------CCCEEEecCCcc
Confidence 887777677778888888888887776654 344333 445556666644
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=1.7e-09 Score=103.27 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=86.6
Q ss_pred ccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeC
Q 048809 251 LKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRG 327 (878)
Q Consensus 251 Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~ 327 (878)
-++++++++.+..+|..+ ..+|++|+|++|.++.+ |..|+.+++|++|+|++|.++.+ ..++++.+|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999999999875 38999999999999988 67789999999999999999877 3478999999999999
Q ss_pred CCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809 328 SDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 328 ~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
|.++.+|.+ ++++. +|+.|++.+|.+.
T Consensus 91 N~l~~l~~~~~~~l~-----------~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLK-----------SLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCT-----------TCSEEECCSSCBC
T ss_pred CccceeCHHHhcccc-----------CCCEEEeCCCCcc
Confidence 999999876 66554 5566788888665
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=1.9e-09 Score=102.59 Aligned_cols=102 Identities=20% Similarity=0.315 Sum_probs=87.3
Q ss_pred CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEee
Q 048809 250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALR 326 (878)
Q Consensus 250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~ 326 (878)
..++++++++.+..+|..+ .++|++|+|++|.|+.+ |..|..+++|++|+|++|.++.+ ..+.++.+|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999999999865 38999999999999988 67799999999999999999876 457999999999999
Q ss_pred CCCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809 327 GSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 327 ~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
+|.++.+|.+ ++++. +|+.|++.+|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLK-----------SLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCT-----------TCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCC-----------CCCEEEeCCCCCC
Confidence 9999998875 66554 5566788888665
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=3.9e-11 Score=117.86 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=95.1
Q ss_pred ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809 225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD 304 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 304 (878)
...++++|++++|.++.+|....+++|++|++++|.+..+|.. +..+++|++|++++|.+..+| .++.+++|++|+++
T Consensus 46 ~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp HTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEES
T ss_pred cCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECC
Confidence 3568999999999999998433899999999999988899875 577899999999999999987 68999999999999
Q ss_pred CCCCCCc---ccccCcccCcEEEeeCCCcccch
Q 048809 305 YCELGDM---AIIGDLKKLVILALRGSDMKELV 334 (878)
Q Consensus 305 ~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp 334 (878)
+|.++.+ ..+.++++|++|++++|.+...+
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 9999875 46899999999999999776653
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=3.3e-08 Score=106.42 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=82.0
Q ss_pred cEEEeeCC-CCCCCCCCCCCCCccEEEeec-CCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCC
Q 048809 230 TAISLNNS-NINELPQGFECPQLKYFRIHN-DHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYC 306 (878)
Q Consensus 230 r~l~l~~~-~~~~l~~~~~~~~Lr~L~l~~-~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~ 306 (878)
..++++++ .++.+|....+++|++|+|++ |.+..++...|..+.+|++|+|++|.++.+| ..|.+|++|++|+|++|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 34677777 788888822788899999986 8888898887899999999999999998775 46789999999999999
Q ss_pred CCCCc-c-cccCcccCcEEEeeCCCccc
Q 048809 307 ELGDM-A-IIGDLKKLVILALRGSDMKE 332 (878)
Q Consensus 307 ~l~~l-~-~i~~L~~L~~L~l~~~~l~~ 332 (878)
.++.+ . .+..+. |++|++.+|.+.-
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 98865 3 344444 9999999887654
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=1.8e-08 Score=107.57 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=100.9
Q ss_pred CCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCC----CCc--------ccc
Q 048809 248 CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCEL----GDM--------AII 314 (878)
Q Consensus 248 ~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l----~~l--------~~i 314 (878)
+++|+.|.+.+ .+..|++..|..+.+|+.|++++|.+..++ ..|..+.++.++.+..... ..+ ..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888888 778888888888999999999888887664 4466666676666554110 000 000
Q ss_pred --------------------------------------------cCcccCcEEEeeCCCcccchHh-hcccccCccc-cc
Q 048809 315 --------------------------------------------GDLKKLVILALRGSDMKELVGE-IGQLTQLRLL-IA 348 (878)
Q Consensus 315 --------------------------------------------~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L-ip 348 (878)
..+.+|+.+++++|.++.+|.. |.++.+|+.+ +|
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0266788888888778887765 7777777777 22
Q ss_pred -------c----cccCCc-EEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchh-cccCCce
Q 048809 349 -------P----ILSRLE-ELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLS-FFKMLQR 415 (878)
Q Consensus 349 -------~----~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~ 415 (878)
. ++.+|+ .+.+.. .+. ......+.++++|+.+++..+....++.... .+++|+.
T Consensus 259 ~ni~~I~~~aF~~~~~L~~~l~l~~-~l~------------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 259 HNLKTIGQRVFSNCGRLAGTLELPA-SVT------------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEECT-TCC------------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred cccceehHHHhhCChhccEEEEEcc-cce------------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 2 556666 666654 222 1223556677778888877777766665432 5556655
Q ss_pred EE
Q 048809 416 YR 417 (878)
Q Consensus 416 L~ 417 (878)
+.
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 43
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=1.2e-07 Score=100.97 Aligned_cols=211 Identities=13% Similarity=0.114 Sum_probs=119.7
Q ss_pred CCCchhhcC--------CCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCC--
Q 048809 263 KIPDNFFTG--------MTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSD-- 329 (878)
Q Consensus 263 ~l~~~~~~~--------l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~-- 329 (878)
.+|+..|.. +.+|+.|+|.+ .++.++ ..|.+|++|+.|++.++.+..+ ..|..+.++..+......
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 677788888 99999999998 888886 4578899999999999887655 667777777777655421
Q ss_pred --cccch-HhhcccccCccc--------ccc-------cccCCcEEEccCCCCCccccccccccccccCccccc-CCCCC
Q 048809 330 --MKELV-GEIGQLTQLRLL--------IAP-------ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN-NLSKL 390 (878)
Q Consensus 330 --l~~lp-~~i~~L~~L~~L--------ip~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~l~~L 390 (878)
...+. ..+.+..+|+.. ++. ...++..+.+.+.... .....+. .+++|
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-------------~~~~~l~~~~~~L 228 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-------------ADFKLIRDYMPNL 228 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-------------HHHHHHHHHCTTC
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-------------HHHHHHHHhcCCC
Confidence 11111 113333333311 000 2333444443332110 0111111 25677
Q ss_pred CEEEeecCCCCCCCcchh-cccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccc-eEEecCc
Q 048809 391 TSLEILIQDEKTLPRDLS-FFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIK-DLCLGGS 468 (878)
Q Consensus 391 ~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~-~L~l~~~ 468 (878)
+.++++.+....+|.... .+.+|+.+.+... ...+....+..+++|+ .+.+.+
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n------------------------i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN------------------------LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT------------------------CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc------------------------cceehHHHhhCChhccEEEEEcc-
Confidence 777777777766665533 5666777665311 1112223344567777 787765
Q ss_pred CCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceee
Q 048809 469 LDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLL 521 (878)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 521 (878)
.+..+.+.. ...+++|+.+++.+. .++.+... ....+++|+.+.
T Consensus 284 -~l~~I~~~a-F~~c~~L~~l~l~~n-~i~~I~~~------aF~~~~~L~~ly 327 (329)
T 3sb4_A 284 -SVTAIEFGA-FMGCDNLRYVLATGD-KITTLGDE------LFGNGVPSKLIY 327 (329)
T ss_dssp -TCCEECTTT-TTTCTTEEEEEECSS-CCCEECTT------TTCTTCCCCEEE
T ss_pred -cceEEchhh-hhCCccCCEEEeCCC-ccCccchh------hhcCCcchhhhc
Confidence 333333222 246788999998653 46666432 445567777765
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=1.4e-07 Score=101.55 Aligned_cols=101 Identities=22% Similarity=0.194 Sum_probs=83.6
Q ss_pred cEEEeecC-CCCCCCchhhcCCCCCcEEEeeC-CCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEee
Q 048809 252 KYFRIHND-HSLKIPDNFFTGMTELRVLDFTR-MHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALR 326 (878)
Q Consensus 252 r~L~l~~~-~~~~l~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~ 326 (878)
..++++++ .+..+|. +..+.+|++|+|++ |.+..+| ..|+.|.+|++|+|++|.++.+ ..|++|.+|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 8999998 69999999999996 9999887 6799999999999999999865 578999999999999
Q ss_pred CCCcccchHhhcccccCcccccccccCCcEEEccCCCCC
Q 048809 327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIE 365 (878)
Q Consensus 327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~ 365 (878)
+|.++.+|..+.... .|+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~-----------~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGL-----------SLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSC-----------CCCEEECCSSCCC
T ss_pred CCccceeCHHHcccC-----------CceEEEeeCCCcc
Confidence 999999887643211 2566677777654
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.36 E-value=5.4e-06 Score=90.30 Aligned_cols=222 Identities=14% Similarity=0.148 Sum_probs=111.7
Q ss_pred CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEee
Q 048809 250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALR 326 (878)
Q Consensus 250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~ 326 (878)
+|+.+.+..+ +..++...|..+ +|+.+.+.. .++.++ ..|.+|.+|+.+++.+|.++.+ ..+. ..+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4555555443 445555555553 455555554 444443 3455556666666655555544 2233 3555555555
Q ss_pred CCCcccchHh-hcccccCccc-ccc----------cccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEE
Q 048809 327 GSDMKELVGE-IGQLTQLRLL-IAP----------ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLE 394 (878)
Q Consensus 327 ~~~l~~lp~~-i~~L~~L~~L-ip~----------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 394 (878)
.+ ++.++.. |.++.+|+.+ +|. .-.+|+.+.+..+ +. ......+.++++|+.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~-i~------------~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNG-VT------------NIASRAFYYCPELAEVT 277 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETT-CC------------EECTTTTTTCTTCCEEE
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCC-cc------------EEChhHhhCCCCCCEEE
Confidence 32 4444432 5555555555 222 1145556655322 11 12235567778888888
Q ss_pred eecCCCC-----CCCcc-hhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCc
Q 048809 395 ILIQDEK-----TLPRD-LSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGS 468 (878)
Q Consensus 395 l~~~~~~-----~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~ 468 (878)
+..+... .++.. +..+.+|+.+.+.. +...+....+..+.+|+.+.+...
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~------------------------~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE------------------------SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT------------------------TCCEECTTTTTTCCSCCEEEECTT
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC------------------------ceEEEhhhhhcCCCCccEEEECcc
Confidence 8776543 23332 33566677666520 011122223344677888888532
Q ss_pred CCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCccc-ccceeeccc
Q 048809 469 LDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFP-VLESLLLRH 524 (878)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~L~~L~L~~ 524 (878)
+..+..... ..+ +|+.+.+.+.. ...+... ....++ ++..|.+..
T Consensus 334 --l~~I~~~aF-~~~-~L~~l~l~~n~-~~~l~~~------~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 334 --VTQINFSAF-NNT-GIKEVKVEGTT-PPQVFEK------VWYGFPDDITVIRVPA 379 (401)
T ss_dssp --CCEECTTSS-SSS-CCCEEEECCSS-CCBCCCS------SCCCSCTTCCEEEECG
T ss_pred --ccEEcHHhC-CCC-CCCEEEEcCCC-Ccccccc------cccCCCCCccEEEeCH
Confidence 333322222 345 89999997753 2332221 223343 566777654
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=1.9e-07 Score=87.30 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=51.3
Q ss_pred CCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhh---hhccceEEEEccccccccccccccccccc
Q 048809 708 NNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAK---SLVRLKQMKIFHCKMITEIVVDDDEEGDN 784 (878)
Q Consensus 708 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~---~l~~L~~L~i~~C~~l~~~~~~~~~~~~~ 784 (878)
..|++|++++|.....-...+..+++|++|++++|..+++.....+.. .+++|++|+|++|+++++....
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~------- 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII------- 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-------
Confidence 457788888776222223334567777777777777777653333332 1346777777777766654211
Q ss_pred cccccccccccchhhccccCcccce
Q 048809 785 YAANYEIVFSELKELRLSSLESLTS 809 (878)
Q Consensus 785 ~~~~~~~~~~~L~~L~l~~c~~L~~ 809 (878)
.+..+++|++|+|++|+.+++
T Consensus 134 ----~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ----ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ----HGGGCTTCCEEEEESCTTCCC
T ss_pred ----HHhcCCCCCEEECCCCCCCCc
Confidence 112345555555555555554
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.35 E-value=5.3e-06 Score=90.33 Aligned_cols=260 Identities=11% Similarity=0.094 Sum_probs=168.0
Q ss_pred ccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccc
Q 048809 514 FPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDES 593 (878)
Q Consensus 514 ~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 593 (878)
+..++.+.+.+ .++.+....+ .. .+|+.+.+.+ +++.+... .+.++ +|+.+.+.+ .+..+....
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF--~~-~~L~~i~l~~--~i~~I~~~-aF~~~-~L~~i~lp~--~l~~I~~~a----- 175 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAF--RN-SQIAKVVLNE--GLKSIGDM-AFFNS-TVQEIVFPS--TLEQLKEDI----- 175 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTT--TT-CCCSEEECCT--TCCEECTT-TTTTC-CCCEEECCT--TCCEECSST-----
T ss_pred cCCccEEEECC--ccCEehHhhc--cc-CCccEEEeCC--CccEECHH-hcCCC-CceEEEeCC--CccEehHHH-----
Confidence 45666666653 4454533322 23 3688888765 46666553 33443 688888775 455554332
Q ss_pred cCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccc
Q 048809 594 SNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDG 672 (878)
Q Consensus 594 ~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~ 672 (878)
+..+++|+.+.+.+ .+++.++.... .+.+|+.+.+.+ +++ ++...+.+ +++|+.+.+.++
T Consensus 176 ------F~~c~~L~~l~l~~-n~l~~I~~~aF--~~~~L~~l~lp~--~l~~I~~~aF~~----~~~L~~l~l~~~---- 236 (401)
T 4fdw_A 176 ------FYYCYNLKKADLSK-TKITKLPASTF--VYAGIEEVLLPV--TLKEIGSQAFLK----TSQLKTIEIPEN---- 236 (401)
T ss_dssp ------TTTCTTCCEEECTT-SCCSEECTTTT--TTCCCSEEECCT--TCCEECTTTTTT----CTTCCCEECCTT----
T ss_pred ------hhCcccCCeeecCC-CcceEechhhE--eecccCEEEeCC--chheehhhHhhC----CCCCCEEecCCC----
Confidence 23478888888876 35777776533 357888888863 466 77777777 888888877653
Q ss_pred cceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccC-cccccCCCcEEEecccC----CceE
Q 048809 673 EELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVP-SSTSFQNLTTVAVDFCY----GMIN 747 (878)
Q Consensus 673 ~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~----~l~~ 747 (878)
++.+....|.+ ++|+.+.+.+ .++.++. .+..+++|+.+.+.+.. .++.
T Consensus 237 -----------------------l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 237 -----------------------VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp -----------------------CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred -----------------------ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 23444556666 7899999953 3555533 45678999999997621 1123
Q ss_pred eechhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEE
Q 048809 748 ILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLV 827 (878)
Q Consensus 748 l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~ 827 (878)
+ ....|.+|++|+.+.+.+ .++.+.... ...+++|+.+.|.+ +++.+... ....+ +|+.+.
T Consensus 291 I-~~~aF~~c~~L~~l~l~~--~i~~I~~~a-----------F~~c~~L~~l~lp~--~l~~I~~~--aF~~~-~L~~l~ 351 (401)
T 4fdw_A 291 I-HPYCLEGCPKLARFEIPE--SIRILGQGL-----------LGGNRKVTQLTIPA--NVTQINFS--AFNNT-GIKEVK 351 (401)
T ss_dssp E-CTTTTTTCTTCCEECCCT--TCCEECTTT-----------TTTCCSCCEEEECT--TCCEECTT--SSSSS-CCCEEE
T ss_pred E-CHHHhhCCccCCeEEeCC--ceEEEhhhh-----------hcCCCCccEEEECc--cccEEcHH--hCCCC-CCCEEE
Confidence 4 456778899999999973 477765432 23468889888853 58888655 35567 999999
Q ss_pred EcCCCCcccccCCC-ccC-CCcceeeccc
Q 048809 828 VEDCPNMSIFSGGE-LST-PNLRKVQLKQ 854 (878)
Q Consensus 828 i~~C~~L~~lp~~~-~~~-~~L~~l~i~~ 854 (878)
+.+. .+..++.+. ..+ .+++.|++..
T Consensus 352 l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 352 VEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EcCC-CCcccccccccCCCCCccEEEeCH
Confidence 9886 445555432 233 4788888864
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=1.1e-07 Score=88.93 Aligned_cols=95 Identities=14% Similarity=0.249 Sum_probs=69.9
Q ss_pred cCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCccccee
Q 048809 731 FQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSF 810 (878)
Q Consensus 731 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 810 (878)
-..|+.|++++|. +++..... +.++++|++|++++|..+++..-.. ........++|++|+|++|+++++-
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~-------L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLER-------LSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHH-------HHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHH-------HHhcccccCCCCEEEcCCCCcCCHH
Confidence 3579999999997 77654333 3689999999999999887753211 0000001468999999999999986
Q ss_pred eccccceeEcCCcceEEEcCCCCccc
Q 048809 811 CSVNNCAFKFPSLERLVVEDCPNMSI 836 (878)
Q Consensus 811 ~~~~~~~~~l~sL~~L~i~~C~~L~~ 836 (878)
... .+..+++|++|++++||+++.
T Consensus 131 Gl~--~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GII--ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHH--HGGGCTTCCEEEEESCTTCCC
T ss_pred HHH--HHhcCCCCCEEECCCCCCCCc
Confidence 543 245689999999999999885
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=6.1e-08 Score=104.65 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=110.1
Q ss_pred ccCCCcEEEeeCCCCCCCC-----CCC--CCCCccEEEeecCCCCCC-CchhhcCCCCCcEEEeeCCCCCCC-----Ccc
Q 048809 225 VLKDCTAISLNNSNINELP-----QGF--ECPQLKYFRIHNDHSLKI-PDNFFTGMTELRVLDFTRMHLLAL-----PSS 291 (878)
Q Consensus 225 ~~~~lr~l~l~~~~~~~l~-----~~~--~~~~Lr~L~l~~~~~~~l-~~~~~~~l~~Lr~L~Ls~~~i~~l-----p~~ 291 (878)
+.+.++.+++++|.++... ..+ ..++|++|++++|.+... ...++..+++|++|+|++|.+... ...
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4567999999999886422 111 236999999999976532 123344567899999999998532 222
Q ss_pred c-cCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCcccc-----hHhhcccccCcccccccccCCcEEEc
Q 048809 292 L-GLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKEL-----VGEIGQLTQLRLLIAPILSRLEELYI 359 (878)
Q Consensus 292 i-~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~l-----p~~i~~L~~L~~Lip~~l~~L~~L~l 359 (878)
+ ...++|++|+|++|.++. + ..+...++|++|+|++|.+... +..+. ..++|+.|++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-----------~~~~L~~L~L 218 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-----------RNRQLQELNV 218 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-----------GCSCCCEEEC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-----------cCCCcCeEEC
Confidence 3 356889999999999864 2 4457889999999999987642 22233 2346788899
Q ss_pred cCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCC
Q 048809 360 GESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK 401 (878)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 401 (878)
++|.+.. .........+...++|+.|++++|.+.
T Consensus 219 s~N~i~~--------~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 219 AYNGAGD--------TAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCCH--------HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCCCCH--------HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 9887761 111233455667788999999998765
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.28 E-value=3.1e-05 Score=84.50 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=47.3
Q ss_pred CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCC-------------------
Q 048809 247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYC------------------- 306 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~------------------- 306 (878)
.+.+|+.+.+.. .+..|++..|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 455566665543 244555555566666666665433 33332 23444444544443221
Q ss_pred --CCCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCccc
Q 048809 307 --ELGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLL 346 (878)
Q Consensus 307 --~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L 346 (878)
.+..+ ..+.++.+|+.+.+.++ +..++. .|.+..+|+.+
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i 190 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSI 190 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBC
T ss_pred CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEE
Confidence 01111 34556667777776554 233333 25555555555
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=1.6e-05 Score=86.85 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=47.8
Q ss_pred CCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeC
Q 048809 260 HSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRG 327 (878)
Q Consensus 260 ~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~ 327 (878)
.+..|.+..|..+.+|+.+.+.. .++.++ ..|.++.+|+.+++..+ ++.+ ..+.++.+|+.+.+..
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 35567778899999999999974 477775 45788899999988654 5544 5566677776665544
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.98 E-value=8.3e-07 Score=95.73 Aligned_cols=128 Identities=14% Similarity=0.084 Sum_probs=95.2
Q ss_pred CCCcEEEeeCCCCCCC--CCCC-CCCCccEEEeecCCCCCCCchhh-----cCCCCCcEEEeeCCCCCC-----CCcccc
Q 048809 227 KDCTAISLNNSNINEL--PQGF-ECPQLKYFRIHNDHSLKIPDNFF-----TGMTELRVLDFTRMHLLA-----LPSSLG 293 (878)
Q Consensus 227 ~~lr~l~l~~~~~~~l--~~~~-~~~~Lr~L~l~~~~~~~l~~~~~-----~~l~~Lr~L~Ls~~~i~~-----lp~~i~ 293 (878)
.+++.|++++|.+... .... .+++|++|++++|.+.......+ ....+|++|+|++|.+.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4689999999987642 1111 45689999999997765433333 356889999999999853 566678
Q ss_pred CCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCcccch-----HhhcccccCcccccccccCCcEEEccCC
Q 048809 294 LLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKELV-----GEIGQLTQLRLLIAPILSRLEELYIGES 362 (878)
Q Consensus 294 ~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~lp-----~~i~~L~~L~~Lip~~l~~L~~L~l~~~ 362 (878)
.+++|++|+|++|.+.. + ..+...++|++|++++|.++... ..+. ..++|+.|++++|
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~-----------~~~~L~~L~Ls~N 249 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR-----------EHPSLELLHLYFN 249 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH-----------HCSSCCEEECTTS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH-----------hCCCCCEEeccCC
Confidence 89999999999999874 2 55677889999999999886532 2222 3356788899999
Q ss_pred CCC
Q 048809 363 PIE 365 (878)
Q Consensus 363 ~~~ 365 (878)
.+.
T Consensus 250 ~i~ 252 (372)
T 3un9_A 250 ELS 252 (372)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.81 E-value=3.6e-05 Score=82.12 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=66.4
Q ss_pred ccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc--cccccc-ccccccccceeEEEEecccccccceeeec
Q 048809 603 LTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK--FKSTIH-ESTKKRFHTIKVLCIEGYDYDGEELFETV 679 (878)
Q Consensus 603 ~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~-~~~~~~l~~L~~L~l~~c~~~~~~~~~~~ 679 (878)
+|+|++|.++++..+. ++. ...++|++|++..|. +. ....+. .. +|+|+.|+++.+...
T Consensus 171 ~P~L~~L~L~g~~~l~-l~~----~~~~~L~~L~L~~~~-l~~~~l~~l~~~~----lp~L~~L~L~~~~~~-------- 232 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS-IGK----KPRPNLKSLEIISGG-LPDSVVEDILGSD----LPNLEKLVLYVGVED-------- 232 (362)
T ss_dssp CTTCCEEEEECCBTCB-CCS----CBCTTCSEEEEECSB-CCHHHHHHHHHSB----CTTCCEEEEECBCGG--------
T ss_pred CCCCcEEEEeCCCCce-ecc----ccCCCCcEEEEecCC-CChHHHHHHHHcc----CCCCcEEEEeccccc--------
Confidence 6677777776653221 111 136778888877654 33 111111 12 778888877643220
Q ss_pred cccccceeeccCCCCchhhhcccc-ccccCCccEEEEccCCCcccccCc---ccccCCCcEEEecccCCceEeechhh--
Q 048809 680 ENGVNAMIKGINFHPDLKQILKQE-SSHANNLEVLEIYGCDNLINLVPS---STSFQNLTTVAVDFCYGMINILTSST-- 753 (878)
Q Consensus 680 ~~~~~l~~l~l~~~~~l~~i~~~~-~~~l~~L~~L~l~~c~~l~~l~~~---~~~l~~L~~L~i~~c~~l~~l~~~~~-- 753 (878)
......+..+.... ...+++|+.|.+.+|......... ...+++|++|+++. +.+++.....+
T Consensus 233 ----------~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~ 301 (362)
T 2ra8_A 233 ----------YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLD 301 (362)
T ss_dssp ----------GTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHT
T ss_pred ----------cccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHh
Confidence 00011111111000 023567777777776643221111 12466777777754 45555322112
Q ss_pred -hhhhccceEEEEccc
Q 048809 754 -AKSLVRLKQMKIFHC 768 (878)
Q Consensus 754 -~~~l~~L~~L~i~~C 768 (878)
+.++++|+.|++++|
T Consensus 302 ~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 302 HVDKIKHLKFINMKYN 317 (362)
T ss_dssp THHHHTTCSEEECCSB
T ss_pred hcccCCcceEEECCCC
Confidence 245677777777665
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.70 E-value=4.4e-05 Score=81.47 Aligned_cols=138 Identities=21% Similarity=0.144 Sum_probs=66.9
Q ss_pred hhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC--ccccc--CcccCcEEEeeCC--CcccchHhhccc
Q 048809 267 NFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD--MAIIG--DLKKLVILALRGS--DMKELVGEIGQL 340 (878)
Q Consensus 267 ~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--l~~i~--~L~~L~~L~l~~~--~l~~lp~~i~~L 340 (878)
.++..+++|+.|+|+++.-..+|. +. +.+|++|++..|.+.. +..++ ++++|++|+|+.+ ....- ..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~----~~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD----GDM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC----SCG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc----hhH
Confidence 345666777777777663233443 33 6677777777666542 23333 5677777776532 10000 001
Q ss_pred ccCccccc-ccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCC-----CCcchhcccCCc
Q 048809 341 TQLRLLIA-PILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT-----LPRDLSFFKMLQ 414 (878)
Q Consensus 341 ~~L~~Lip-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~ 414 (878)
..+..++. ..+++|+.|.+.+|.+.-. . ...+..-..+++|+.|+++.|.+.. ++..+..+++|+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~--------~-~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNV--------V-VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHH--------H-HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchH--------H-HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 11111111 1345666666666544300 0 0011111245667777776665432 222333566677
Q ss_pred eEEEE
Q 048809 415 RYRIL 419 (878)
Q Consensus 415 ~L~l~ 419 (878)
.|+++
T Consensus 311 ~L~L~ 315 (362)
T 2ra8_A 311 FINMK 315 (362)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77664
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.0019 Score=70.13 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=15.2
Q ss_pred ccEEEeecCCCCCCCchhhcCCCCCcEEEeeC
Q 048809 251 LKYFRIHNDHSLKIPDNFFTGMTELRVLDFTR 282 (878)
Q Consensus 251 Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~ 282 (878)
|+.+.+..+ +..|.+..|.++.+|+.+.+..
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~ 96 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQD 96 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGG
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecC
Confidence 455555432 3444444555555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.55 E-value=5.9e-05 Score=76.15 Aligned_cols=63 Identities=29% Similarity=0.329 Sum_probs=48.4
Q ss_pred cCCCCCcEEEeeCCCCCCC---CccccCCCCCcEEEccCCCCCCcccccCcc--cCcEEEeeCCCccc
Q 048809 270 TGMTELRVLDFTRMHLLAL---PSSLGLLQNLQTLSLDYCELGDMAIIGDLK--KLVILALRGSDMKE 332 (878)
Q Consensus 270 ~~l~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~l~~i~~L~--~L~~L~l~~~~l~~ 332 (878)
.++++|+.|+|++|.+..+ |..+..+++|++|+|++|.++.+..+..+. +|++|++++|.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 5677888888888888654 355678888888888888888765566655 88888888887653
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=4.8e-05 Score=76.80 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=60.4
Q ss_pred CCCCccEEEeecCCCCCCCc--hhhcCCCCCcEEEeeCCCCCCCCccccCCC--CCcEEEccCCCCCC-c--------cc
Q 048809 247 ECPQLKYFRIHNDHSLKIPD--NFFTGMTELRVLDFTRMHLLALPSSLGLLQ--NLQTLSLDYCELGD-M--------AI 313 (878)
Q Consensus 247 ~~~~Lr~L~l~~~~~~~l~~--~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~--~L~~L~L~~~~l~~-l--------~~ 313 (878)
.+++|++|++++|.+..++. ..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|.+.. + ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 57899999999998877653 4567899999999999999876 3455555 99999999999763 1 23
Q ss_pred ccCcccCcEEE
Q 048809 314 IGDLKKLVILA 324 (878)
Q Consensus 314 i~~L~~L~~L~ 324 (878)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 66777887776
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.0035 Score=68.05 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=60.1
Q ss_pred CcEEEeeCCCCCCCCCCC--CCCCccEEEeecC---CCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEE
Q 048809 229 CTAISLNNSNINELPQGF--ECPQLKYFRIHND---HSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLS 302 (878)
Q Consensus 229 lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~---~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~ 302 (878)
++.+.+.. .++.|.... .+.+|+.+.+..+ .+..+....|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 56666653 355555443 6778888888765 356677777777777777666543 44443 3456777777777
Q ss_pred ccCCCCCCc--ccccCcccCcEEEeeCC
Q 048809 303 LDYCELGDM--AIIGDLKKLVILALRGS 328 (878)
Q Consensus 303 L~~~~l~~l--~~i~~L~~L~~L~l~~~ 328 (878)
+... +..+ ..+..+.+|+.+.+..+
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred ccce-eeeecccceecccccccccccce
Confidence 7543 3332 45666667777766543
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.49 E-value=3.3e-05 Score=74.06 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=58.2
Q ss_pred hcCCCCCcEEEeeCC-CCC-----CCCccccCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCccc----
Q 048809 269 FTGMTELRVLDFTRM-HLL-----ALPSSLGLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKE---- 332 (878)
Q Consensus 269 ~~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~---- 332 (878)
+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.+ + ..+...++|++|+|++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455566666666666 553 234445555666666666666553 1 334444566666666665543
Q ss_pred -chHhhcccccCcccccccccCCcEEEc--cCCCCCccccccccccccccCcccccCCCCCCEEEeecCCC
Q 048809 333 -LVGEIGQLTQLRLLIAPILSRLEELYI--GESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDE 400 (878)
Q Consensus 333 -lp~~i~~L~~L~~Lip~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~ 400 (878)
+...+. ..++|+.|++ .+|.+. ..........+...++|+.|++++|.+
T Consensus 112 ~l~~~L~-----------~n~~L~~L~L~~~~N~i~--------~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQ-----------SNTSLIELRIDNQSQPLG--------NNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGG-----------GCSSCCEEECCCCSSCCC--------HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHH-----------hCCCceEEEecCCCCCCC--------HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 111121 1234555566 445443 111112334455556777777776643
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=5e-05 Score=72.80 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=51.6
Q ss_pred CCcEEEeeCC-CCCC-----CCCCC-CCCCccEEEeecCCCCCCC----chhhcCCCCCcEEEeeCCCCCC-----CCcc
Q 048809 228 DCTAISLNNS-NINE-----LPQGF-ECPQLKYFRIHNDHSLKIP----DNFFTGMTELRVLDFTRMHLLA-----LPSS 291 (878)
Q Consensus 228 ~lr~l~l~~~-~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~l~----~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~ 291 (878)
++++|++++| .+.. +...+ ..++|++|++++|.+..-. ...+...+.|++|+|++|.|.. +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 4666666666 5442 11111 3455666666666443211 1112444556666666665532 3444
Q ss_pred ccCCCCCcEEEc--cCCCCCC-----c-ccccCcccCcEEEeeCCCc
Q 048809 292 LGLLQNLQTLSL--DYCELGD-----M-AIIGDLKKLVILALRGSDM 330 (878)
Q Consensus 292 i~~L~~L~~L~L--~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l 330 (878)
+...++|++|+| ++|.+.. + ..+...++|++|++++|.+
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 555556666666 5555542 2 3344445566666665544
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.56 E-value=0.092 Score=56.33 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=41.5
Q ss_pred hccccccccCCccEEEEccCCCcccccC-cccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccccccccc
Q 048809 699 ILKQESSHANNLEVLEIYGCDNLINLVP-SSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIV 775 (878)
Q Consensus 699 i~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~ 775 (878)
+....+.++.+|+.+.+.. .+..++. .+..+++|+.+.+.+ ..++.+ ....|.+|++|+.+.|.. .++.+.
T Consensus 254 I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~ 325 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETL-EPRVFMDCVKLSSVTLPT--ALKTIQ 325 (379)
T ss_dssp ECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEE-CTTTTTTCTTCCEEECCT--TCCEEC
T ss_pred eCccccceeehhccccccc--cceeccccccccccccccccccc-ccccee-hhhhhcCCCCCCEEEcCc--cccEEH
Confidence 3344555667777777743 2444433 235667788877765 456666 344556777788777742 344443
No 164
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.51 E-value=0.036 Score=58.75 Aligned_cols=171 Identities=13% Similarity=0.091 Sum_probs=96.6
Q ss_pred CCcEEEEEeCChHHhhc----------cCCC-CccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcch
Q 048809 2 GGCKVLLTARSHDVLSS----------KMDC-QKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIA 70 (878)
Q Consensus 2 ~gs~iivTtR~~~v~~~----------~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 70 (878)
++.++|+|++...+... ..+. ...+++.+|+.+|+.+++....+..... --.+.+.+|++.++|.|++
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTCHHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHH
Confidence 35689999987653211 0111 2478999999999999998865211111 1235678999999999999
Q ss_pred HHHHHHHHhcCCChHHH-HHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccCCccHHHHHHHHh-h
Q 048809 71 ILPVAKALKNKSSLYVW-KDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGM-G 148 (878)
Q Consensus 71 ~~~~g~~l~~~~~~~~w-~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp~~~~~~li~~w~-~ 148 (878)
+..++..+....+...| ..+.+..... ....+. .+.+ + ++ ..+..+..+|.-+ ....++..... +
T Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~---~l~~-~-~~------~~~~~l~~la~g~-~~~~~l~~~~~~~ 308 (350)
T 2qen_A 242 LVVFGVEYLRNGDFGRAMKRTLEVAKGL-IMGELE---ELRR-R-SP------RYVDILRAIALGY-NRWSLIRDYLAVK 308 (350)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHH---HHHH-H-CH------HHHHHHHHHHTTC-CSHHHHHHHHHHT
T ss_pred HHHHHHHHhccccHhHHHHHHHHHHHHH-HHHHHH---HHHh-C-Ch------hHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 99998765432222222 1111111000 000111 1222 2 56 8888888888722 23344444321 1
Q ss_pred ccCccCCCcHHHHHHHHHHHHHHHHhccccccccCCccee-hhHHHHHH
Q 048809 149 LGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFS-MHDVVRDV 196 (878)
Q Consensus 149 ~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~-mhdli~~~ 196 (878)
.| +.+..++. ++++.|++.+++...+ +.|. .|.+++++
T Consensus 309 ~~----~~~~~~~~----~~l~~L~~~gli~~~~--~~y~~~~p~~~~~ 347 (350)
T 2qen_A 309 GT----KIPEPRLY----ALLENLKKMNWIVEED--NTYKIADPVVATV 347 (350)
T ss_dssp TC----CCCHHHHH----HHHHHHHHTTSEEEET--TEEEESSHHHHHH
T ss_pred hC----CCCHHHHH----HHHHHHHhCCCEEecC--CEEEEecHHHHHH
Confidence 11 11223333 4889999999997652 3455 46777655
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.48 E-value=0.021 Score=60.78 Aligned_cols=169 Identities=9% Similarity=0.047 Sum_probs=98.6
Q ss_pred CCcEEEEEeCChHHhhc----------cCCC-CccEEcCCCChHHHHHHHHHHhCC-CCCChhhHHHHHHHHHHcCCCcc
Q 048809 2 GGCKVLLTARSHDVLSS----------KMDC-QKNIFVDVLNAKEAWSLFEKMTGD-CIENGELKSVATEIVKECAGLPI 69 (878)
Q Consensus 2 ~gs~iivTtR~~~v~~~----------~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~g~Pl 69 (878)
++.++|+|+|....... ..+. ...+.+.+|+.+|+.+++...++. ....... .+|++.|+|.|+
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~ 244 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPG 244 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHH
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHH
Confidence 35689999998654221 0111 357899999999999999986521 1111111 789999999999
Q ss_pred hHHHHHHHHhcCCChHHHHH-HHHHHHccCcchhhhhhh-hhccc--ccCCCCCChHHHHHHHhhhcccCCccHHHHHHH
Q 048809 70 AILPVAKALKNKSSLYVWKD-ALRQLKNKSLLGAAYSSL-ELSYY--HLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYH 145 (878)
Q Consensus 70 a~~~~g~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~l-~~sy~--~L~~~~~~~~~~k~cf~~~~~fp~~~~~~li~~ 145 (878)
++..++..+....+...|-. +.+.... .+..-+ .+.|+ .||+ ..+..+..+|.-+ ....+...
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~l~~------~~~~~l~~la~g~--~~~~l~~~ 311 (357)
T 2fna_A 245 WLTYFGFIYLDNKNLDFAINQTLEYAKK-----LILKEFENFLHGREIARK------RYLNIMRTLSKCG--KWSDVKRA 311 (357)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH-----HHHHHHHHHHTTCGGGHH------HHHHHHHHHTTCB--CHHHHHHH
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHH-----HHHHHHHHHhhccccccH------HHHHHHHHHHcCC--CHHHHHHH
Confidence 99999987754333333321 1111100 111111 12221 6777 8899998888733 44444332
Q ss_pred Hh-hccCccCCCcHHHHHHHHHHHHHHHHhccccccccCCccee-hhHHHHHH
Q 048809 146 GM-GLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFS-MHDVVRDV 196 (878)
Q Consensus 146 w~-~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~-mhdli~~~ 196 (878)
.. ..|. .-+..++. ++++.|++.+++...+ +.|+ .|.++++.
T Consensus 312 ~~~~~g~---~~~~~~~~----~~L~~L~~~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 312 LELEEGI---EISDSEIY----NYLTQLTKHSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHCS---CCCHHHHH----HHHHHHHHTTSEEESS--SCEEESSHHHHHH
T ss_pred HHHhcCC---CCCHHHHH----HHHHHHHhCCCEEecC--CEEEecCHHHHHh
Confidence 11 1121 01223333 4789999999997653 3455 57777764
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.28 E-value=0.1 Score=56.05 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccch
Q 048809 482 GFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPL 561 (878)
Q Consensus 482 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~ 561 (878)
...+|+.+.+.. .++.+... ....+.+|+.+.+.. +++.+... .+..+++|+.+.+.+ ..++.+...
T Consensus 238 ~~~~L~~i~lp~--~v~~I~~~------aF~~~~~l~~i~l~~--~i~~i~~~--aF~~c~~L~~i~l~~-~~i~~I~~~ 304 (379)
T 4h09_A 238 GMKALDEIAIPK--NVTSIGSF------LLQNCTALKTLNFYA--KVKTVPYL--LCSGCSNLTKVVMDN-SAIETLEPR 304 (379)
T ss_dssp TCSSCCEEEECT--TCCEECTT------TTTTCTTCCEEEECC--CCSEECTT--TTTTCTTCCEEEECC-TTCCEECTT
T ss_pred CCccceEEEcCC--CccEeCcc------ccceeehhccccccc--cceecccc--ccccccccccccccc-cccceehhh
Confidence 356777777753 24444321 334466677777643 34444222 345677888888865 346666543
Q ss_pred hhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecC
Q 048809 562 VIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCT 622 (878)
Q Consensus 562 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~ 622 (878)
.+.++.+|+.+.+.. .++.+.... +..+.+|+.+.+.+ +++.+..
T Consensus 305 -aF~~c~~L~~i~lp~--~l~~I~~~a-----------F~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 305 -VFMDCVKLSSVTLPT--ALKTIQVYA-----------FKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp -TTTTCTTCCEEECCT--TCCEECTTT-----------TTTCTTCCCCCCCT--TCCEECT
T ss_pred -hhcCCCCCCEEEcCc--cccEEHHHH-----------hhCCCCCCEEEECC--ccCEEch
Confidence 567888898888863 355554332 23478888888854 4666654
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.71 E-value=0.016 Score=51.31 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=23.5
Q ss_pred EEEeeCCCCC--CCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCC
Q 048809 231 AISLNNSNIN--ELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRM 283 (878)
Q Consensus 231 ~l~l~~~~~~--~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~ 283 (878)
+++.+++.++ .+|..+ -++|++|+|++|.+..+|.++|..+.+|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4445555554 444332 123444444444444444444444444444444444
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.33 E-value=0.057 Score=58.72 Aligned_cols=156 Identities=13% Similarity=0.003 Sum_probs=88.3
Q ss_pred EEEEEeCChHHhhc-------c-CCCCccEEcCCCChHHHHHHHHHHh---CCCCCChhhHHHHHHHHHHcC------CC
Q 048809 5 KVLLTARSHDVLSS-------K-MDCQKNIFVDVLNAKEAWSLFEKMT---GDCIENGELKSVATEIVKECA------GL 67 (878)
Q Consensus 5 ~iivTtR~~~v~~~-------~-~~~~~~~~l~~L~~~~~~~Lf~~~~---~~~~~~~~~~~~~~~i~~~c~------g~ 67 (878)
.||+|||..++... . ......+.+.+++.++.+++|...+ +... .--.+....|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCc
Confidence 47888876653311 0 0112239999999999999998765 2211 112457788999999 99
Q ss_pred cchHHHHHHH-Hh-----cC--CChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC----
Q 048809 68 PIAILPVAKA-LK-----NK--SSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY---- 135 (878)
Q Consensus 68 Pla~~~~g~~-l~-----~~--~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp---- 135 (878)
|..+..+... .. +. -+.+.+..++..... ...+.-+++.||+ +.+.++..+|.+.
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~~l~~l~~------~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------ASIQTHELEALSI------HELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------CCSSSSSCH------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------cchHHHHHHcCCH------HHHHHHHHHHHHHhcCC
Confidence 9765544432 11 11 133444444332110 2345567788999 9999999888653
Q ss_pred -CccHHHHHHHHh--h---ccCccCCCcHHHHHHHHHHHHHHHHhccccccc
Q 048809 136 -IRNVKDLLYHGM--G---LGLFQNINTVDEARDRAHTLVDKLKNSCLLLGG 181 (878)
Q Consensus 136 -~~~~~~li~~w~--~---~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~ 181 (878)
.....++...+. + .|. ..-+..++ .+++++|++.+++...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNV--KPRGYTQY----HIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCC--CCCCHHHH----HHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHHHHHHhhcCC--CCCCHHHH----HHHHHHHHhCCCEEee
Confidence 123344444332 1 121 11122223 3478999999999653
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.15 E-value=0.033 Score=49.25 Aligned_cols=52 Identities=25% Similarity=0.260 Sum_probs=23.3
Q ss_pred EEEeecCCCC--CCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCC
Q 048809 253 YFRIHNDHSL--KIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCE 307 (878)
Q Consensus 253 ~L~l~~~~~~--~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 307 (878)
+++.+++.+. .+|.++ ..+|++|+|++|.|+.+|.. |..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3444444444 444332 12345555555555555432 3444444444444443
No 170
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.00 E-value=4.1 Score=43.24 Aligned_cols=155 Identities=10% Similarity=-0.033 Sum_probs=90.4
Q ss_pred CcEEEEEeCChHHhhc----c-CCCCccEEcCCCChHHHHHHHHHHhC----CCCCChhhHHHHHHHHHHcC---CCcc-
Q 048809 3 GCKVLLTARSHDVLSS----K-MDCQKNIFVDVLNAKEAWSLFEKMTG----DCIENGELKSVATEIVKECA---GLPI- 69 (878)
Q Consensus 3 gs~iivTtR~~~v~~~----~-~~~~~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~---g~Pl- 69 (878)
+.+||+||+....... . ......+.+.+++.++..++|+.++. ..... .+....|++.++ |.|-
T Consensus 164 ~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~ 240 (384)
T 2qby_B 164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARK 240 (384)
T ss_dssp CEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHH
T ss_pred ceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHH
Confidence 5678999987532111 0 01123899999999999999999862 11222 345667777777 8776
Q ss_pred hHHHHHHHH--h---cCCChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccCC-ccH-HHH
Q 048809 70 AILPVAKAL--K---NKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYI-RNV-KDL 142 (878)
Q Consensus 70 a~~~~g~~l--~---~~~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp~-~~~-~~l 142 (878)
|+.++.... . ..-+.+.++.++++... ..+.-+++.|++ +.|..+..++.... -.+ +..
T Consensus 241 a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~--------~~~~~~~~~l~~------~~~~~l~al~~~~~~~~~~~~~ 306 (384)
T 2qby_B 241 AVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ--------ERLIEAVKALPF------HYKLALRSLIESEDVMSAHKMY 306 (384)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH--------HHHHHHHHSSCH------HHHHHHHHHHTCCBHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc--------chHHHHHHcCCH------HHHHHHHHHHHhcccChHHHHH
Confidence 544444433 2 12367788877776432 335566788888 76766666665111 222 122
Q ss_pred HHHHhhccCccCCCcHHHHHHHHHHHHHHHHhcccccc
Q 048809 143 LYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLG 180 (878)
Q Consensus 143 i~~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~ 180 (878)
.......| + ...+...+ .+++..|.+.+++..
T Consensus 307 ~~~~~~~g-~-~~~~~~~~----~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 307 TDLCNKFK-Q-KPLSYRRF----SDIISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHTT-C-CCCCHHHH----HHHHHHHHHTTSEEE
T ss_pred HHHHHHcC-C-CCCCHHHH----HHHHHHHHhCCCEEE
Confidence 22222233 1 11223333 348899999999975
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.40 E-value=0.66 Score=45.57 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=52.8
Q ss_pred CCcEEEEEeCChHHhhc-cCCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809 2 GGCKVLLTARSHDVLSS-KMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALK 79 (878)
Q Consensus 2 ~gs~iivTtR~~~v~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~ 79 (878)
.+.++|+||+....... .......+++.+++.+|.++++...+..... .--.+....|++.|+|.|..+..+...+.
T Consensus 155 ~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 155 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46778888876542221 1222468999999999999999988731111 11235677899999999999887765543
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.62 E-value=0.27 Score=46.54 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=36.2
Q ss_pred cCCCCCcEEEeeCC-CCC-----CCCccccCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCcc
Q 048809 270 TGMTELRVLDFTRM-HLL-----ALPSSLGLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMK 331 (878)
Q Consensus 270 ~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~ 331 (878)
..-..|+.|+|+++ .|. .+-+.+..-+.|+.|+|++|.+.+ + ..+..=+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34456666777664 542 234445555667777777776653 2 33444556777777776654
No 173
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.03 E-value=0.28 Score=46.42 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=47.6
Q ss_pred CCccEEEeecC-CCCC-----CCchhhcCCCCCcEEEeeCCCCC-----CCCccccCCCCCcEEEccCCCCCC-----c-
Q 048809 249 PQLKYFRIHND-HSLK-----IPDNFFTGMTELRVLDFTRMHLL-----ALPSSLGLLQNLQTLSLDYCELGD-----M- 311 (878)
Q Consensus 249 ~~Lr~L~l~~~-~~~~-----l~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----l- 311 (878)
+.|+.|+++++ .+.. +- ..+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|.|.. +
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 45666666553 3332 11 22355567888888888773 344555556778888888888763 2
Q ss_pred ccccCcccCcEEEeeCC
Q 048809 312 AIIGDLKKLVILALRGS 328 (878)
Q Consensus 312 ~~i~~L~~L~~L~l~~~ 328 (878)
..+..=+.|++|+|+++
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 34444455777777654
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.06 E-value=1.2 Score=46.33 Aligned_cols=75 Identities=7% Similarity=-0.050 Sum_probs=48.8
Q ss_pred cEEEEEeCChHHhhcc--CCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809 4 CKVLLTARSHDVLSSK--MDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALK 79 (878)
Q Consensus 4 s~iivTtR~~~v~~~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~ 79 (878)
.++|.||......... ......+.+.+++.+|..+++...++.... .--.+....+++++.|.|-.+..+...+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4566666644321111 112357899999999999999998832111 11235678899999999988877665543
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=78.09 E-value=13 Score=39.07 Aligned_cols=155 Identities=11% Similarity=0.033 Sum_probs=87.2
Q ss_pred CcEEEEEeCChHHhhc----c-CCC-CccEEcCCCChHHHHHHHHHHhC----CCCCChhhHHHHHHHHHHcC---CCc-
Q 048809 3 GCKVLLTARSHDVLSS----K-MDC-QKNIFVDVLNAKEAWSLFEKMTG----DCIENGELKSVATEIVKECA---GLP- 68 (878)
Q Consensus 3 gs~iivTtR~~~v~~~----~-~~~-~~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~---g~P- 68 (878)
+..+|+||+....... . ... ...+.+.+++.++..+++...+. ..... .+....++++++ |.|
T Consensus 167 ~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 167 WVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDAR 243 (387)
T ss_dssp -CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHH
T ss_pred eEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHH
Confidence 4567888876532111 0 111 24789999999999999998862 11222 234667777777 999
Q ss_pred chHHHHHHHHh-----c--CCChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcc-cCC---c
Q 048809 69 IAILPVAKALK-----N--KSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGY-SYI---R 137 (878)
Q Consensus 69 la~~~~g~~l~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~-fp~---~ 137 (878)
.|+.++..... + .-+.+.++.+++.... ..+.-++..|++ +.+..+...+. +-+ .
T Consensus 244 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~--------~~~~~~~~~l~~------~~~~~l~a~~~~~~~~~~~ 309 (387)
T 2v1u_A 244 RALDLLRVAGEIAERRREERVRREHVYSARAEIER--------DRVSEVVRTLPL------HAKLVLLSIMMLEDGGRPA 309 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH--------HHHHHHHHSSCH------HHHHHHHHHHHHSSSSCCE
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh--------chHHHHHHcCCH------HHHHHHHHHHHHhcCCCCC
Confidence 44444433322 1 1266777777665422 234456778888 76766666663 322 2
Q ss_pred cHHHHHHH----HhhccCccCCCcHHHHHHHHHHHHHHHHhcccccc
Q 048809 138 NVKDLLYH----GMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLG 180 (878)
Q Consensus 138 ~~~~li~~----w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~ 180 (878)
.+.++.+. ....| + ...+.. .+.++++.|...+++..
T Consensus 310 ~~~~~~~~~~~~~~~~~-~-~~~~~~----~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 310 STGEIYERYKELTSTLG-L-EHVTLR----RVSGIISELDMLGIVKS 350 (387)
T ss_dssp EHHHHHHHHHHHHHHTT-C-CCCCHH----HHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHHHHHHhcC-C-CCCCHH----HHHHHHHHHHhCCCeEE
Confidence 23433332 22233 1 111222 33458899999999875
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.70 E-value=8.2 Score=40.70 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=85.1
Q ss_pred CcEEEEEeCChHHhhccCCC-------CccEEcCCCChHHHHHHHHHHhCC-CCCChhhHHHHHHHHHHcC---CCcch-
Q 048809 3 GCKVLLTARSHDVLSSKMDC-------QKNIFVDVLNAKEAWSLFEKMTGD-CIENGELKSVATEIVKECA---GLPIA- 70 (878)
Q Consensus 3 gs~iivTtR~~~v~~~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---g~Pla- 70 (878)
+..+|+||+....... +.. ...+.+.+++.++.++++...+.. .....--.+....+++.++ |.|..
T Consensus 163 ~~~~I~~~~~~~~~~~-~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 163 KISFIGITNDVKFVDL-LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp -EEEEEEESCGGGGGG-CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred eEEEEEEECCCChHhh-hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 4467888887654332 111 247999999999999999987621 0011112345666777776 99884
Q ss_pred HHHHHHHHh-----c--CCChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC--C---cc
Q 048809 71 ILPVAKALK-----N--KSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY--I---RN 138 (878)
Q Consensus 71 ~~~~g~~l~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp--~---~~ 138 (878)
+.++..... + .-+.+.++.++++.. ...+.-++..+|+ ..+..+..++... + +.
T Consensus 242 ~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~--------~~~~~~~~~~l~~------~~~~il~ai~~~~~~g~~~~~ 307 (386)
T 2qby_A 242 LDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE--------RDRVRDIILTLPF------HSKLVLMAVVSISSEENVVST 307 (386)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH--------HHHHHHHHHTSCH------HHHHHHHHHHHHC-----CEE
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh--------hchHHHHHHcCCH------HHHHHHHHHHHHHhcCCCcee
Confidence 443333321 1 125666666666532 1234455677877 7666666666321 1 12
Q ss_pred HHHHHHHH----hhccCccCCCcHHHHHHHHHHHHHHHHhcccccc
Q 048809 139 VKDLLYHG----MGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLG 180 (878)
Q Consensus 139 ~~~li~~w----~~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~ 180 (878)
+.++.+.. -..| +. .-+... +.++++.|.+.+++..
T Consensus 308 ~~~l~~~~~~~~~~~g-~~-~~~~~~----~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 308 TGAVYETYLNICKKLG-VE-AVTQRR----VSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHHHHHHHHHHHT-CC-CCCHHH----HHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHhcC-CC-CCCHHH----HHHHHHHHHhCCCEEE
Confidence 23332221 1122 11 111122 3347888888998864
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=65.85 E-value=8.5 Score=36.62 Aligned_cols=73 Identities=4% Similarity=-0.029 Sum_probs=48.7
Q ss_pred CCcEEEEEeCChHHhhc-cCCCCccEEcCCCChHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCCCcchHHHHHHH
Q 048809 2 GGCKVLLTARSHDVLSS-KMDCQKNIFVDVLNAKEAWSLFEKMTG--DCIENGELKSVATEIVKECAGLPIAILPVAKA 77 (878)
Q Consensus 2 ~gs~iivTtR~~~v~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~ 77 (878)
.+.++|+||+....... .......+.+.+++.++..+++...+. .... -.+....+++.++|.|..+..+...
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45678888876542111 112234889999999999999998872 1111 1356677889999999965544433
No 178
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=64.48 E-value=64 Score=33.63 Aligned_cols=158 Identities=9% Similarity=0.023 Sum_probs=85.9
Q ss_pred CcEEEEEeCChHHhhccCC-------CCccEEcCCCChHHHHHHHHHHhCC-CCCChhhHHHHHHHHHHc---------C
Q 048809 3 GCKVLLTARSHDVLSSKMD-------CQKNIFVDVLNAKEAWSLFEKMTGD-CIENGELKSVATEIVKEC---------A 65 (878)
Q Consensus 3 gs~iivTtR~~~v~~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c---------~ 65 (878)
+..||+||++.+.... .. ....+.+.+++.++..+++...+.. .....--.+....|++++ +
T Consensus 159 ~~~iI~~~~~~~~~~~-l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (389)
T 1fnn_A 159 RIALVIVGHNDAVLNN-LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR 237 (389)
T ss_dssp CEEEEEEESSTHHHHT-SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTS
T ss_pred CEEEEEEECCchHHHH-hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCC
Confidence 5678888887755442 21 1236999999999999999988721 001112245677888899 7
Q ss_pred CCcchH-HHHHHHHh-----cC--CChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC--
Q 048809 66 GLPIAI-LPVAKALK-----NK--SSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-- 135 (878)
Q Consensus 66 g~Pla~-~~~g~~l~-----~~--~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-- 135 (878)
|.|-.+ ..+..... +. -+.+....+..... ...+.-.+..|+. +.|..+..++.+.
T Consensus 238 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~--------~~~~~~~l~~l~~------~~~~~L~~l~~~~~~ 303 (389)
T 1fnn_A 238 GDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL--------FGISEEVLIGLPL------HEKLFLLAIVRSLKI 303 (389)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS--------CCCCHHHHHHSCH------HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh--------hhhHHHHHHcCCH------HHHHHHHHHHHHHhh
Confidence 876544 33332221 11 13333333333321 1222334567787 7777766666432
Q ss_pred --C--ccHHHHHHHHh----hccCccCCCcHHHHHHHHHHHHHHHHhccccccc
Q 048809 136 --I--RNVKDLLYHGM----GLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGG 181 (878)
Q Consensus 136 --~--~~~~~li~~w~----~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~ 181 (878)
+ ....++...+. ..|.. .-+.. .+.+++.+|.+.+++...
T Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~----~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 304 SHTPYITFGDAEESYKIVCEEYGER--PRVHS----QLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HCSSCEEHHHHHHHHHHHHHHTTCC--CCCHH----HHHHHHHHHHHTTSSEEE
T ss_pred ccCCCccHHHHHHHHHHHHHHcCCC--CCCHH----HHHHHHHHHHhCCCeEEe
Confidence 1 12233333322 12311 11222 234589999999999753
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.39 E-value=21 Score=36.27 Aligned_cols=74 Identities=8% Similarity=0.034 Sum_probs=48.5
Q ss_pred CCcEEEEEeCChHHh-hccCCCCccEEcCCCChHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCCCcc-hHHHHHHH
Q 048809 2 GGCKVLLTARSHDVL-SSKMDCQKNIFVDVLNAKEAWSLFEKMTG--DCIENGELKSVATEIVKECAGLPI-AILPVAKA 77 (878)
Q Consensus 2 ~gs~iivTtR~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~g~Pl-a~~~~g~~ 77 (878)
+++++|+||+...-. .........+++.+++.++..+++...+. +... -.+....|++.|+|.|. |+..+...
T Consensus 136 ~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 356788888764321 11112234899999999999999998872 1111 13567789999999994 55555444
Q ss_pred H
Q 048809 78 L 78 (878)
Q Consensus 78 l 78 (878)
.
T Consensus 213 ~ 213 (323)
T 1sxj_B 213 V 213 (323)
T ss_dssp H
T ss_pred H
Confidence 3
No 180
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=40.85 E-value=51 Score=26.86 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHHHHHh---C-CCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhcCC-ChHHHHHHHHHHHc
Q 048809 35 EAWSLFEKMT---G-DCIENGELKSVATEIVKECAGLPIAILPVAKALKNKS-SLYVWKDALRQLKN 96 (878)
Q Consensus 35 ~~~~Lf~~~~---~-~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~~~-~~~~w~~~l~~l~~ 96 (878)
|.|++=+-.- + +-.+.+.....|-+.+++..-.|+|+.++-+.-.+.. ..+.|..+++++..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElkP 91 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRP 91 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhh
Confidence 5666654322 3 5578888999999999999999999999998876653 33448888887654
No 181
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=34.48 E-value=59 Score=32.91 Aligned_cols=77 Identities=6% Similarity=-0.049 Sum_probs=48.9
Q ss_pred CCcEEEEEeCChHHhh-ccCCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809 2 GGCKVLLTARSHDVLS-SKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALK 79 (878)
Q Consensus 2 ~gs~iivTtR~~~v~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~ 79 (878)
.++++|+||+...-.. ........+.+.+++.++..+++...+..... .--.+....|++.++|.|-++..+-..+.
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3567888887643211 00111237899999999999999988731111 11235677888999999987655444433
No 182
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=29.61 E-value=60 Score=28.01 Aligned_cols=63 Identities=14% Similarity=0.281 Sum_probs=46.0
Q ss_pred HHHHHHHHHh---C-CCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Q 048809 35 EAWSLFEKMT---G-DCIENGELKSVATEIVKECAGLPIAILPVAKALKNKS-SLYVWKDALRQLKNK 97 (878)
Q Consensus 35 ~~~~Lf~~~~---~-~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~~~-~~~~w~~~l~~l~~~ 97 (878)
|.|++=+-.- + +-.+.+.....+-+-+++..-.|+|+.++-+.-.+.. ..+.|..+++++...
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElkPt 135 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPT 135 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhH
Confidence 5666544322 3 4567788888999999999999999999988776653 344588888876543
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=23.77 E-value=93 Score=29.51 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=35.9
Q ss_pred ccEEcCCCChHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCCCcchHHHH
Q 048809 24 KNIFVDVLNAKEAWSLFEKMTG--DCIENGELKSVATEIVKECAGLPIAILPV 74 (878)
Q Consensus 24 ~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~g~Pla~~~~ 74 (878)
..+.+.+++.++..+++...+. .... -.+....+++.++|.+-.+..+
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHH
Confidence 6799999999999999999872 2111 2356778888999987666543
No 184
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=20.08 E-value=94 Score=32.13 Aligned_cols=71 Identities=10% Similarity=0.124 Sum_probs=46.5
Q ss_pred CcEEEEEeCChH-HhhccCCCCccEEcCCCChHHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCCCcchHHHHHH
Q 048809 3 GCKVLLTARSHD-VLSSKMDCQKNIFVDVLNAKEAWSLFEKMTG--DCIENGELKSVATEIVKECAGLPIAILPVAK 76 (878)
Q Consensus 3 gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~ 76 (878)
+..+|+||.... +..........+++.+++.++..+++...+. +... -.+....|++.++|.|..+..+..
T Consensus 149 ~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp SEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred ceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 456676765433 2111122236789999999999999998772 1111 134567899999999998766543
Done!