BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048810
(582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 297 KVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL 355
++G + L +L+ +DI +P E+G LR L +LDLS+ L+ P +S L+ L E+
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEI 706
Query: 356 YMGNS 360
+ N+
Sbjct: 707 DLSNN 711
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 297 KVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL 355
++G + L +L+ +DI +P E+G LR L +LDLS+ L+ P +S L+ L E+
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEI 709
Query: 356 YMGNS 360
+ N+
Sbjct: 710 DLSNN 714
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 301 LKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358
L LEVL + ++ LP +LR L LDLS C LE ++P + LS L+ L M
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMS 207
Query: 359 -NSF 361
N+F
Sbjct: 208 HNNF 211
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 301 LKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358
L LEVL + ++ LP +LR L LDLS C LE ++P + LS L+ L M
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMA 502
Query: 359 NS 360
++
Sbjct: 503 SN 504
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 301 LKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358
L LEVL + ++ LP +LR L LDLS C LE ++P + LS L+ L M
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 526
Query: 359 NS 360
++
Sbjct: 527 HN 528
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD C L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 116
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N +L E LNGL L
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 175
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 176 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 213
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 301 LKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358
L LEVL + ++ LP +LR L LDLS C LE ++P + LS L+ L M
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMS 502
Query: 359 NS 360
++
Sbjct: 503 HN 504
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD C L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N +L E LNGL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 212
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 322 GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLV----- 376
G L ++LL + + T+ I N +S+L + L + + WEK++ ++ ++
Sbjct: 1 GPLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWN 60
Query: 377 --ELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARG--RWFVKSETSRLMKL 432
E+NGL + + R+ EI P +++ E + ++ G + VK T +++K
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEI-PIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK- 118
Query: 433 ERLKSV 438
E+L+ V
Sbjct: 119 EKLEVV 124
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD C L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N L E LNGL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-DLTELPAGLLNGLENL 174
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 212
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 322 GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLV----- 376
G L ++LL + + T+ I N +S+L + L + + WEK++ ++ ++
Sbjct: 1 GPLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN 60
Query: 377 --ELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARG--RWFVKSETSRLMKL 432
E+NGL + + R+ EI P +++ E + ++ G + VK T +++K
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEI-PIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK- 118
Query: 433 ERLKSV 438
E+L+ V
Sbjct: 119 EKLEVV 124
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 322 GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLV----- 376
G L ++LL + + T+ I N +S+L + L + + WEK++ ++ ++
Sbjct: 1 GPLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN 60
Query: 377 --ELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARG--RWFVKSETSRLMKL 432
E+NGL + + R+ EI P +++ E + ++ G + VK T +++K
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEI-PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLK- 118
Query: 433 ERLKSV 438
E+L+ V
Sbjct: 119 EKLEVV 124
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD C L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N L E LNGL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 212
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD C L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N L E LNGL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 212
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 278 RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCW 336
L NL L L + DI+ + L L+ LSF + + L PL L L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNK 184
Query: 337 TLEVIAPNVISKLSRLEELYMGNS 360
++ +V++KL+ LE L N+
Sbjct: 185 VSDI---SVLAKLTNLESLIATNN 205
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD C L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N L E LNGL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 212
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 278 RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCW 336
L NL L L + DI+ + L L+ LSF + + L PL L L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNK 184
Query: 337 TLEVIAPNVISKLSRLEELYMGNS 360
++ +V++KL+ LE L N+
Sbjct: 185 VSDI---SVLAKLTNLESLIATNN 205
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD C L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N L E LNGL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-QLTELPAGLLNGLENL 174
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 212
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332
L L LD L+D + LK LE+LS R++ ++ + + +G L +L++LDL
Sbjct: 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDL 157
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
Query: 278 RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWT 337
L NL+ L + +LK I +G L KLEVL ++I G L RL+ ++ W
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN----TGGLTRLKKVN----W- 176
Query: 338 LEVIAPNVISKLSRLE-ELYMGNSFK----RW 364
+++ +++ + + ELY+ N+ K RW
Sbjct: 177 IDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 278 RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCW 336
L NL L L + DI+ + L L+ L+F + + L PL L L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNK 184
Query: 337 TLEVIAPNVISKLSRLEELYMGNS 360
++ +V++KL+ LE L N+
Sbjct: 185 VSDI---SVLAKLTNLESLIATNN 205
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 278 RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWT 337
L NL L L + DI+ + L L+ LSF + + PL L L+ LD+S+
Sbjct: 132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL--ANLTTLERLDISSNKV 189
Query: 338 LEVIAPNVISKLSRLEELYMGNS 360
++ +V++KL+ LE L N+
Sbjct: 190 SDI---SVLAKLTNLESLIATNN 209
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 278 RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWT 337
L NL L L + DI+ + L L+ LSF + + PL L L+ LD+S+
Sbjct: 131 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL--ANLTTLERLDISSNKV 188
Query: 338 LEVIAPNVISKLSRLEELYMGNS 360
++ +V++KL+ LE L N+
Sbjct: 189 SDI---SVLAKLTNLESLIATNN 208
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 241 IGLCSIQVSDHFFEGMEGLKVLQFXXXXXXXXXXXXDRLINLQTLCLDGCR-LKDIAKV- 298
G+ S+ S ++ LK L+ L L+ L L GC L++ +
Sbjct: 193 TGIRSLPAS---IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 299 GQLKKLEVLSFRD-SDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLS 350
G L+ L +D S++ LPL+I +L +L+ LDL C L + P++I++L
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLP 301
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 278 RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWT 337
L NL L L + DI+ + L L+ L+F + + PL L L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPL--ANLTTLERLDISSNKV 184
Query: 338 LEVIAPNVISKLSRLEELYMGNS 360
++ +V++KL+ LE L N+
Sbjct: 185 SDI---SVLAKLTNLESLIATNN 204
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 278 RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWT 337
L NL L L + DI+ + L L+ L+F + + PL L L+ LD+S+
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPL--ANLTTLERLDISSNKV 184
Query: 338 LEVIAPNVISKLSRLEELYMGNS 360
++ +V++KL+ LE L N+
Sbjct: 185 SDI---SVLAKLTNLESLIATNN 204
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 12 LSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVL 71
L +E+ L++ V +MK + A I+ C G P+ +++L AL + + W L
Sbjct: 286 LGREKGLEILSLFV--NMKKEDLPAEAHSIIKECKGSPL-VVSLIGALLRDFPNRWAYYL 342
Query: 72 RQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSL 108
RQL++ K I SYD+ +EA S+
Sbjct: 343 RQLQNKQFKRIRKSS---------SYDYEALDEAMSI 370
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 12 LSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVL 71
L +E+ L++ V +MK + A I+ C G P+ +++L AL + + W L
Sbjct: 293 LGREKGLEILSLFV--NMKKEDLPAEAHSIIKECKGSPL-VVSLIGALLRDFPNRWAYYL 349
Query: 72 RQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSL 108
RQL++ K I SYD+ +EA S+
Sbjct: 350 RQLQNKQFKRIRKSS---------SYDYEALDEAMSI 377
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N +L E LNGL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 212
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N +L E LNGL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 212
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 282 LQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI 341
L L LD L + G L L L + ++ LPL L L +LD+S L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 342 APNVISKLSRLEELYM-GNSFK-----------RWEKVEGGSNASLVE-----LNGLSKL 384
+ L L+ELY+ GN K + EK+ +N +L E LNGL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174
Query: 385 TTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSE 425
TL + +P+ L + G W E
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP---WLCNCE 212
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 478 FPRLKHLYVE-------SCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLR 530
F R+ ++VE +CS + H + ++R P+L+ L L +A+ +T CC+
Sbjct: 696 FKRIAEMWVEEIDVLEAACSAMKHAITNLRS---SFQPMLQDLCLFIVASFQTRCCAPTL 752
Query: 531 EDQSFSNLRIIEVEHCNKL 549
E + + + E C L
Sbjct: 753 EISKTAIVMFFKDEGCKPL 771
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 25/107 (23%)
Query: 475 GEGFPRLKHLYVESCSEILHI-VGSVRRVGCEVFPLLETLYLIGLANLETICCS-QLRED 532
FP L HLY+ + LH+ VG + ++G L+TL L + CCS QL+
Sbjct: 318 AANFPSLTHLYIRGNVKKLHLGVGCLEKLGN-----LQTLDLSHNDIEASDCCSLQLK-- 370
Query: 533 QSFSNLRIIEVEHCNKLKHLFSFSMAKN-LLWLQKVGVEECDELKMI 578
L HL + +++ N L LQ +EC +L+++
Sbjct: 371 ---------------NLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 277 DRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRD 311
++L NL L L G +LKDI+ + LKKLE L D
Sbjct: 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,196,944
Number of Sequences: 62578
Number of extensions: 583512
Number of successful extensions: 1479
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1442
Number of HSP's gapped (non-prelim): 87
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)