Query 048810
Match_columns 582
No_of_seqs 340 out of 3090
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 13:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-61 4.2E-66 522.8 20.8 403 1-416 306-729 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.5E-51 7.6E-56 467.0 35.7 514 1-578 340-909 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.1E-24 2.3E-29 249.7 19.7 337 207-573 91-439 (968)
4 PLN00113 leucine-rich repeat r 99.9 7.5E-25 1.6E-29 250.9 17.9 343 207-575 116-488 (968)
5 KOG0444 Cytoskeletal regulator 99.9 1.1E-26 2.5E-31 229.3 -4.1 327 199-553 43-379 (1255)
6 PLN03210 Resistant to P. syrin 99.9 7.6E-22 1.7E-26 226.4 20.0 319 231-579 532-886 (1153)
7 KOG4194 Membrane glycoprotein 99.9 2.4E-23 5.3E-28 204.6 4.7 338 206-569 99-446 (873)
8 KOG4194 Membrane glycoprotein 99.9 6.1E-23 1.3E-27 201.8 6.1 342 205-573 74-427 (873)
9 PF00931 NB-ARC: NB-ARC domain 99.9 5.7E-22 1.2E-26 194.7 8.3 134 4-139 149-285 (287)
10 KOG0444 Cytoskeletal regulator 99.9 1.2E-23 2.6E-28 208.2 -5.2 339 205-576 28-376 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 9.9E-23 2.2E-27 192.0 -6.8 203 197-414 100-307 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 6.4E-21 1.4E-25 179.8 -6.7 204 198-416 78-287 (565)
13 KOG0618 Serine/threonine phosp 99.7 5.5E-18 1.2E-22 175.9 1.6 332 210-579 46-423 (1081)
14 KOG0617 Ras suppressor protein 99.7 6.3E-19 1.4E-23 147.5 -4.7 166 222-401 24-192 (264)
15 KOG0618 Serine/threonine phosp 99.6 2.9E-17 6.2E-22 170.7 -1.2 66 205-273 64-130 (1081)
16 KOG0617 Ras suppressor protein 99.6 7.3E-18 1.6E-22 141.2 -5.1 156 205-365 29-188 (264)
17 PRK15387 E3 ubiquitin-protein 99.6 7.6E-15 1.7E-19 157.3 15.3 258 209-550 201-458 (788)
18 KOG4658 Apoptotic ATPase [Sign 99.6 4.3E-15 9.4E-20 162.6 10.2 331 220-578 512-863 (889)
19 PRK15370 E3 ubiquitin-protein 99.5 5.5E-14 1.2E-18 151.7 13.9 249 206-490 175-426 (754)
20 PRK15387 E3 ubiquitin-protein 99.5 9.5E-14 2.1E-18 148.9 14.7 245 199-490 212-456 (788)
21 PRK15370 E3 ubiquitin-protein 99.5 1E-13 2.2E-18 149.6 12.2 234 199-464 189-427 (754)
22 KOG4237 Extracellular matrix p 99.4 8.6E-15 1.9E-19 138.6 -6.6 269 244-546 78-356 (498)
23 KOG4237 Extracellular matrix p 99.3 1.7E-13 3.7E-18 129.9 -0.9 293 244-572 57-356 (498)
24 KOG0532 Leucine-rich repeat (L 99.2 9.4E-13 2E-17 130.6 -3.5 177 209-401 75-253 (722)
25 cd00116 LRR_RI Leucine-rich re 99.2 1.6E-12 3.6E-17 129.8 -2.7 137 252-394 18-177 (319)
26 KOG0532 Leucine-rich repeat (L 99.2 2E-12 4.3E-17 128.3 -2.7 188 213-416 54-246 (722)
27 cd00116 LRR_RI Leucine-rich re 99.1 1.7E-11 3.7E-16 122.4 3.3 181 209-395 23-234 (319)
28 PF14580 LRR_9: Leucine-rich r 99.1 5.8E-11 1.2E-15 104.7 3.2 105 255-361 17-124 (175)
29 PF14580 LRR_9: Leucine-rich r 99.0 3.3E-10 7.2E-15 99.9 5.5 103 209-315 19-126 (175)
30 KOG1259 Nischarin, modulator o 99.0 4.4E-11 9.4E-16 109.8 -0.3 186 205-400 210-417 (490)
31 COG4886 Leucine-rich repeat (L 98.8 2.7E-09 5.9E-14 109.8 5.4 171 229-413 114-286 (394)
32 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.6E-14 105.6 1.2 208 205-415 117-337 (505)
33 COG4886 Leucine-rich repeat (L 98.8 6.5E-09 1.4E-13 107.0 6.0 178 208-400 115-295 (394)
34 KOG1259 Nischarin, modulator o 98.7 2.3E-09 5E-14 98.6 -0.9 127 230-362 283-411 (490)
35 KOG3207 Beta-tubulin folding c 98.7 5.6E-09 1.2E-13 101.1 1.5 210 299-546 118-336 (505)
36 KOG4341 F-box protein containi 98.6 1.5E-09 3.2E-14 104.5 -4.1 305 209-569 138-459 (483)
37 KOG4341 F-box protein containi 98.5 5.3E-09 1.1E-13 100.7 -2.7 287 257-577 138-441 (483)
38 PLN03150 hypothetical protein; 98.5 2.3E-07 4.9E-12 100.3 8.7 101 259-360 420-525 (623)
39 PLN03150 hypothetical protein; 98.5 3.7E-07 8.1E-12 98.6 9.0 109 232-342 419-532 (623)
40 PF13855 LRR_8: Leucine rich r 98.4 2.1E-07 4.5E-12 67.3 3.7 56 258-313 2-60 (61)
41 KOG2120 SCF ubiquitin ligase, 98.4 8.6E-09 1.9E-13 94.9 -5.7 64 477-547 311-374 (419)
42 KOG1909 Ran GTPase-activating 98.3 5.1E-08 1.1E-12 92.1 -1.7 252 254-547 27-309 (382)
43 PF13855 LRR_8: Leucine rich r 98.3 4.4E-07 9.5E-12 65.6 3.5 60 231-292 1-61 (61)
44 KOG2120 SCF ubiquitin ligase, 98.3 1.9E-08 4.2E-13 92.6 -5.6 175 209-392 185-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.3 8.1E-09 1.7E-13 105.9 -9.3 178 205-394 105-291 (1096)
46 KOG3665 ZYG-1-like serine/thre 98.2 7.5E-07 1.6E-11 96.0 3.3 128 205-334 118-259 (699)
47 KOG0531 Protein phosphatase 1, 98.2 3.7E-07 8E-12 94.2 -0.2 104 254-360 92-196 (414)
48 PF12799 LRR_4: Leucine Rich r 98.2 2.7E-06 5.8E-11 56.3 3.9 37 258-294 2-38 (44)
49 KOG1909 Ran GTPase-activating 98.1 1.7E-07 3.8E-12 88.5 -2.9 17 205-221 26-42 (382)
50 KOG0531 Protein phosphatase 1, 98.1 3.3E-07 7.3E-12 94.5 -1.7 183 213-412 76-263 (414)
51 KOG2982 Uncharacterized conser 98.1 4.8E-07 1E-11 83.6 -0.7 58 258-315 46-110 (418)
52 PF12799 LRR_4: Leucine Rich r 97.9 1.9E-05 4.2E-10 52.2 4.3 32 303-334 2-33 (44)
53 PRK15386 type III secretion pr 97.8 4.7E-05 1E-09 75.8 7.1 12 350-361 156-167 (426)
54 KOG3665 ZYG-1-like serine/thre 97.8 1.5E-05 3.4E-10 86.0 3.7 135 257-395 122-263 (699)
55 KOG2982 Uncharacterized conser 97.7 9.1E-06 2E-10 75.4 0.8 82 254-335 68-156 (418)
56 KOG4579 Leucine-rich repeat (L 97.7 3.9E-06 8.4E-11 68.8 -2.2 108 211-320 29-141 (177)
57 PRK15386 type III secretion pr 97.7 0.00019 4E-09 71.7 8.8 73 207-291 50-123 (426)
58 KOG1859 Leucine-rich repeat pr 97.7 1.4E-06 3E-11 90.0 -6.3 79 254-334 184-263 (1096)
59 KOG1644 U2-associated snRNP A' 97.5 0.00018 4E-09 63.3 5.7 123 259-390 21-148 (233)
60 KOG4579 Leucine-rich repeat (L 97.5 1.1E-05 2.3E-10 66.2 -2.3 102 257-360 27-133 (177)
61 KOG1644 U2-associated snRNP A' 97.4 0.00026 5.7E-09 62.3 5.4 81 254-334 61-149 (233)
62 COG5238 RNA1 Ran GTPase-activa 97.3 8.7E-05 1.9E-09 68.1 1.2 251 254-546 27-313 (388)
63 COG5238 RNA1 Ran GTPase-activa 97.2 0.00026 5.7E-09 65.1 3.1 116 452-571 185-312 (388)
64 KOG2123 Uncharacterized conser 97.0 4.8E-05 1E-09 70.0 -3.4 100 256-356 18-123 (388)
65 KOG1947 Leucine rich repeat pr 96.9 0.00019 4E-09 76.1 -0.5 38 324-361 242-280 (482)
66 KOG2123 Uncharacterized conser 96.8 7.9E-05 1.7E-09 68.7 -3.8 98 230-332 18-124 (388)
67 KOG2739 Leucine-rich acidic nu 96.8 0.0005 1.1E-08 63.3 1.3 54 281-334 44-100 (260)
68 KOG2739 Leucine-rich acidic nu 96.8 0.0004 8.6E-09 63.9 0.5 101 255-357 41-150 (260)
69 KOG1947 Leucine rich repeat pr 96.1 0.0016 3.5E-08 68.9 0.5 88 477-569 241-328 (482)
70 KOG3864 Uncharacterized conser 96.1 0.0018 3.9E-08 57.2 0.4 69 504-575 121-189 (221)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.004 8.7E-08 34.1 0.5 21 258-278 1-21 (22)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0047 1E-07 33.8 0.6 20 303-322 1-20 (22)
73 PF13306 LRR_5: Leucine rich r 95.2 0.06 1.3E-06 45.2 6.7 78 229-311 10-90 (129)
74 PF13306 LRR_5: Leucine rich r 95.1 0.073 1.6E-06 44.7 6.9 106 248-359 3-112 (129)
75 PRK04841 transcriptional regul 94.4 0.38 8.3E-06 55.5 12.5 145 11-185 185-332 (903)
76 PF13504 LRR_7: Leucine rich r 94.2 0.031 6.8E-07 28.3 1.4 16 303-318 2-17 (17)
77 KOG3864 Uncharacterized conser 93.9 0.0069 1.5E-07 53.7 -2.3 69 477-551 123-191 (221)
78 PF13504 LRR_7: Leucine rich r 93.5 0.045 9.8E-07 27.7 1.3 16 258-273 2-17 (17)
79 KOG0473 Leucine-rich repeat pr 92.7 0.0044 9.5E-08 56.0 -5.5 81 254-334 39-120 (326)
80 smart00369 LRR_TYP Leucine-ric 90.5 0.23 5E-06 28.3 2.0 21 301-321 1-21 (26)
81 smart00370 LRR Leucine-rich re 90.5 0.23 5E-06 28.3 2.0 21 301-321 1-21 (26)
82 KOG0473 Leucine-rich repeat pr 89.8 0.0089 1.9E-07 54.1 -6.4 91 270-362 31-123 (326)
83 smart00370 LRR Leucine-rich re 87.9 0.5 1.1E-05 26.9 2.1 20 256-275 1-20 (26)
84 smart00369 LRR_TYP Leucine-ric 87.9 0.5 1.1E-05 26.9 2.1 20 256-275 1-20 (26)
85 TIGR03015 pepcterm_ATPase puta 84.9 4.7 0.0001 38.8 8.6 71 4-74 184-266 (269)
86 smart00367 LRR_CC Leucine-rich 84.4 0.41 8.8E-06 27.3 0.5 16 562-577 2-17 (26)
87 PRK00080 ruvB Holliday junctio 74.7 78 0.0017 31.5 13.6 136 5-165 173-310 (328)
88 smart00364 LRR_BAC Leucine-ric 73.0 2.2 4.7E-05 24.3 1.1 17 303-319 3-19 (26)
89 smart00365 LRR_SD22 Leucine-ri 65.4 4.9 0.00011 22.9 1.6 16 302-317 2-17 (26)
90 PF13516 LRR_6: Leucine Rich r 56.7 6.9 0.00015 21.5 1.2 13 280-292 2-14 (24)
91 TIGR00635 ruvB Holliday juncti 52.4 2.3E+02 0.005 27.6 14.7 137 5-166 152-290 (305)
92 KOG4308 LRR-containing protein 49.0 0.67 1.4E-05 48.4 -6.8 132 258-395 145-303 (478)
93 smart00368 LRR_RI Leucine rich 48.3 15 0.00032 21.3 1.7 14 257-270 2-15 (28)
94 COG3899 Predicted ATPase [Gene 47.0 3E+02 0.0065 31.6 13.1 115 5-130 212-333 (849)
95 cd00923 Cyt_c_Oxidase_Va Cytoc 38.5 1.5E+02 0.0032 23.4 6.2 60 16-75 22-87 (103)
96 PRK06893 DNA replication initi 38.4 77 0.0017 29.6 5.8 51 3-54 152-202 (229)
97 PF02284 COX5A: Cytochrome c o 37.4 1.3E+02 0.0028 24.0 5.7 61 15-75 24-90 (108)
98 KOG3763 mRNA export factor TAP 33.3 14 0.0003 38.6 -0.0 69 448-517 240-310 (585)
99 PF09675 Chlamy_scaf: Chlamydi 29.6 90 0.002 24.9 3.8 56 39-111 2-60 (114)
100 COG2909 MalT ATP-dependent tra 28.9 1.6E+02 0.0035 33.0 6.9 142 12-186 194-339 (894)
101 PRK00411 cdc6 cell division co 22.0 8E+02 0.017 24.8 10.6 140 5-164 200-357 (394)
102 PF14164 YqzH: YqzH-like prote 20.5 1.5E+02 0.0032 21.3 3.1 35 8-42 22-58 (64)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-61 Score=522.76 Aligned_cols=403 Identities=29% Similarity=0.403 Sum_probs=319.9
Q ss_pred CCCcceEEccCCCHHHHHHHHHHhhCCC--CCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHHHHhcc
Q 048810 1 MNSQKEIQIDVLSKEEALQLFKKIVGDS--MKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE-SLDTWKDVLRQLRSS 77 (582)
Q Consensus 1 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~~~W~~~l~~l~~~ 77 (582)
||++.++++++|.++|||+||+++||+. ..++.+.++|++||++|+|+|||++++|+.|+.| +.++|+++.+.+.+.
T Consensus 306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS 385 (889)
T ss_pred ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence 7888999999999999999999999943 4556699999999999999999999999999987 888999999999888
Q ss_pred ccccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHHH
Q 048810 78 YAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLK 157 (582)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L~ 157 (582)
...++.++.+.|+++|++|||+||.+ +|.||+|||+|||||+|++++||..||||||+++....+.+++.+++|+.+||
T Consensus 386 ~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 386 LAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred ccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 66566667899999999999999966 99999999999999999999999999999999886556778899999999999
Q ss_pred hccccccCC---CCccEEhhhHHHHHHHHHhc-----cCCeEEcccchhhhHHHH-HhhccCcEEEEecCCCCcCCCCCC
Q 048810 158 SLCLLLDGD---AEDEVKMHDVIRVVAVSIAE-----DEHMFNIPNVADLEKKME-ETIRKDPIAISLPYRGDQVLPQRM 228 (582)
Q Consensus 158 ~~~l~~~~~---~~~~~~mhdl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~l~~~~ 228 (582)
.+++++... ....|+|||+|||||.++++ +++.+.... ......| ...+..+|++++.++.+..++...
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~--~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG--VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC--cCccccccccchhheeEEEEeccchhhccCCC
Confidence 999998664 45789999999999999999 555333322 1222334 556678999999999999999999
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC-CCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccE
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEV 306 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~ 306 (582)
.+++|++|-+..+......++..+|..|+.||+|||++|. +.++|++|++|.|||||+++++.++. |..+++|++|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 9999999999988323678888999999999999999764 67899999999999999999999999 999999999999
Q ss_pred EEeeCCC-CCccchhhcCCCCCCEEcccccc-cccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCc
Q 048810 307 LSFRDSD-IEQLPLEIGQLRRLQLLDLSNCW-TLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKL 384 (582)
Q Consensus 307 L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~-~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 384 (582)
|++..+. +..+|.....|++|++|.+..-. ..+..-...+.++.+|+.+....... .....+..+..|
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~----------~~~e~l~~~~~L 692 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV----------LLLEDLLGMTRL 692 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh----------HhHhhhhhhHHH
Confidence 9999884 44555656669999999987632 11111111134455555555433221 122334444444
Q ss_pred c----EEEEEecccccCCccc-ccccccEEEEEeccc
Q 048810 385 T----TLEIHVRYAEILPQDL-VSVELQRYKMFIGEA 416 (582)
Q Consensus 385 ~----~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 416 (582)
+ .+.+.++...+.+..+ .+.+|+.|.+..+..
T Consensus 693 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred HHHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence 4 2232333333444443 778888888876665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.5e-51 Score=467.04 Aligned_cols=514 Identities=21% Similarity=0.281 Sum_probs=342.4
Q ss_pred CCCcceEEccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhcccc
Q 048810 1 MNSQKEIQIDVLSKEEALQLFKKIVG-DSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYA 79 (582)
Q Consensus 1 ~~~~~~~~l~~L~~~~~~~Lf~~~a~-~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~ 79 (582)
+|++++|+++.|+++|||+||+++|| ...++.++.+++++||++|+|+||||+++|+.|++++.++|++++++++....
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~ 419 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLD 419 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCcc
Confidence 36788999999999999999999999 44456679999999999999999999999999999999999999999876433
Q ss_pred ccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHHHhc
Q 048810 80 KEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSL 159 (582)
Q Consensus 80 ~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L~~~ 159 (582)
.+|.++|++||++|+.+..|.||+|+|+||.++.++ .+..|+|.+.... ...++.|+++
T Consensus 420 -------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~k 478 (1153)
T PLN03210 420 -------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDK 478 (1153)
T ss_pred -------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhc
Confidence 689999999999998644799999999999887553 3666777765431 1137789999
Q ss_pred cccccCCCCccEEhhhHHHHHHHHHhccCC------eEEcccchhhhHHHH--HhhccCcEEEEecCCCCcCCC--C--C
Q 048810 160 CLLLDGDAEDEVKMHDVIRVVAVSIAEDEH------MFNIPNVADLEKKME--ETIRKDPIAISLPYRGDQVLP--Q--R 227 (582)
Q Consensus 160 ~l~~~~~~~~~~~mhdl~~~l~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~l~l~~~~~~~l~--~--~ 227 (582)
||++.. .+.++|||++|+||+.+++++. -+.... +.+.... ......++.+++....+..+. . .
T Consensus 479 sLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~--~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 479 SLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA--KDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred CCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH--HHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 999764 3579999999999999987432 111111 1111111 122334444444433332111 1 1
Q ss_pred CCCCCccEE-------------------------------EeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhh
Q 048810 228 MRCPRLGLF-------------------------------LLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL 276 (582)
Q Consensus 228 ~~~~~L~~L-------------------------------~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i 276 (582)
.++++|+.| .+.++ ....+|..+ .+.+|+.|+++++.+..+|..+
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~--~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY--PLRCMPSNF--RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC--CCCCCCCcC--CccCCcEEECcCcccccccccc
Confidence 134444444 44433 333444433 3567777777777777777777
Q ss_pred hcccCccEEEcCCCC-CCCccccCCCCCccEEEeeCC-CCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccE
Q 048810 277 DRLINLQTLCLDGCR-LKDIAKVGQLKKLEVLSFRDS-DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE 354 (582)
Q Consensus 277 ~~L~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~ 354 (582)
..+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|+.++.+|.. + ++++|+.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCE
Confidence 777777777777764 444556777778888888776 56677777778888888888887777777764 2 6778888
Q ss_pred EEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc--ccc--------ccccc
Q 048810 355 LYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA--RGR--------WFVKS 424 (582)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~--------~~~~~ 424 (582)
|++++|..... .+ . ...+|+.|+++++.+..+|..+.+++|+.|.+..+.. .+. ....+
T Consensus 709 L~Lsgc~~L~~--------~p-~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 709 LNLSGCSRLKS--------FP-D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred EeCCCCCCccc--------cc-c--ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence 88777753222 11 1 1357788888888888888777777777776643221 000 01112
Q ss_pred cccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccC
Q 048810 425 ETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGC 504 (582)
Q Consensus 425 ~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 504 (582)
+.++.+.+..+..+..+ |.++..+ ++|+.|++++|..++.+|... .+++|+.|++++|..+..++.
T Consensus 778 ~sL~~L~Ls~n~~l~~l--P~si~~L-~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~------- 843 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVEL--PSSIQNL-HKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPD------- 843 (1153)
T ss_pred ccchheeCCCCCCcccc--ChhhhCC-CCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCccccccc-------
Confidence 34444445444333222 4444442 556666666655555544322 355666666666655544321
Q ss_pred CCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcchHHH
Q 048810 505 EVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMI 578 (582)
Q Consensus 505 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i 578 (582)
..++|+.|++.+ ..++.+|.. .+.+++|+.|++++|++++.+|. .+..+++|+.+++.+|++|+.+
T Consensus 844 -~~~nL~~L~Ls~-n~i~~iP~s----i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 844 -ISTNISDLNLSR-TGIEEVPWW----IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred -cccccCEeECCC-CCCccChHH----HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccc
Confidence 124555555555 344444432 56788999999999999999875 3567889999999999988754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.1e-24 Score=249.68 Aligned_cols=337 Identities=16% Similarity=0.110 Sum_probs=199.8
Q ss_pred hccCcEEEEecCCCCc-CCCCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCC-CCChhhhcccCc
Q 048810 207 IRKDPIAISLPYRGDQ-VLPQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLDRLINL 282 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L 282 (582)
....++.|++++|.+. .+|... .+++|+.|++++| .....+|. ..+++|++|++++|.+. .+|..++++++|
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 4456666666666653 444432 5666666666655 22233332 34566666666666664 356666677777
Q ss_pred cEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCC
Q 048810 283 QTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359 (582)
Q Consensus 283 ~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 359 (582)
++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++.+++|++|++++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~ 245 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVY 245 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcC
Confidence 777777776654 566667777777777766655 56666677777777777665444445544 66677777777766
Q ss_pred CccccccccCCCccchhhccCCCCccEEEEEecccc-cCCccc-ccccccEEEEEeccc---cccccccccccccceecc
Q 048810 360 SFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQDL-VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLER 434 (582)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~ 434 (582)
|..... .+..++++++|+.|++++|.+. .+|..+ .+++|+.|+++.+.. .+.+....+.++.+.+..
T Consensus 246 n~l~~~--------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 246 NNLTGP--------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred ceeccc--------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 654332 4556667777777777766654 344444 566777777655443 223334445555555554
Q ss_pred cceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccc
Q 048810 435 LKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLY 514 (582)
Q Consensus 435 ~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 514 (582)
+.....+ |.++.. +++|+.|++++|......+..+ +.+++|+.|++++|.-...++. ....+++|+.|+
T Consensus 318 n~~~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~p~~l---~~~~~L~~L~Ls~n~l~~~~p~-----~~~~~~~L~~L~ 386 (968)
T PLN00113 318 NNFTGKI--PVALTS-LPRLQVLQLWSNKFSGEIPKNL---GKHNNLTVLDLSTNNLTGEIPE-----GLCSSGNLFKLI 386 (968)
T ss_pred CccCCcC--ChhHhc-CCCCCEEECcCCCCcCcCChHH---hCCCCCcEEECCCCeeEeeCCh-----hHhCcCCCCEEE
Confidence 4322221 444444 3677777777766544454443 3667777777776642222221 233456777777
Q ss_pred ccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810 515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
+.++.-...++. ..+.+++|+.|++++|.--..+|. .+..+++|+.|++++|.
T Consensus 387 l~~n~l~~~~p~----~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 387 LFSNSLEGEIPK----SLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNN 439 (968)
T ss_pred CcCCEecccCCH----HHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCc
Confidence 776432222222 245788999999999854334553 56789999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=7.5e-25 Score=250.92 Aligned_cols=343 Identities=17% Similarity=0.146 Sum_probs=214.5
Q ss_pred hccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCC-CCChhhhcccCccEE
Q 048810 207 IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLDRLINLQTL 285 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L~~L 285 (582)
...++++|++++|.+....+...+++|++|++++| .....+|.. ++.+++|++|++++|.+. .+|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 56788899998888754333446788888988887 333445554 478888899999888875 478888888888888
Q ss_pred EcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcc
Q 048810 286 CLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFK 362 (582)
Q Consensus 286 ~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 362 (582)
++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCee
Confidence 888888776 778888888888888888777 67888888888888888886554556655 78888888888888765
Q ss_pred ccccccCCCccchhhccCCCCccEEEEEecccc-cCCccc-ccccccEEEEEeccc---cccccccccccccceecccce
Q 048810 363 RWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQDL-VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLERLKS 437 (582)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~~~~ 437 (582)
... .+..+.++++|+.|++++|.+. .+|..+ .+++|+.|++..+.. .+.+....+.++.+.+..+..
T Consensus 273 ~~~--------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 273 SGP--------IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred ecc--------CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 433 3456666777777777766654 334433 566666666654433 122233444555555544432
Q ss_pred eehccccchHHHhhhcccceeeccccCccccccccc---------------------CCCCCCCCcEEEEeecCCceeee
Q 048810 438 VSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD---------------------DGEGFPRLKHLYVESCSEILHIV 496 (582)
Q Consensus 438 ~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~---------------------~~~~l~~L~~L~l~~~~~l~~~~ 496 (582)
...+ |.++..+ ++|+.|++++|......+..+. .++.+++|+.|++.+|.....++
T Consensus 345 ~~~~--p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 345 SGEI--PKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred cCcC--ChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 2111 3333332 4555555555443322222221 01245566666666553222221
Q ss_pred cccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcch
Q 048810 497 GSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDEL 575 (582)
Q Consensus 497 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L 575 (582)
. ....+++|+.|+++++ ++...... ....+++|+.|++++|.-...+|.. ...++|+.|++++|.--
T Consensus 422 ~-----~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~l~~L~~L~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 422 S-----EFTKLPLVYFLDISNN-NLQGRINS---RKWDMPSLQMLSLARNKFFGGLPDS---FGSKRLENLDLSRNQFS 488 (968)
T ss_pred h-----hHhcCCCCCEEECcCC-cccCccCh---hhccCCCCcEEECcCceeeeecCcc---cccccceEEECcCCccC
Confidence 1 2345666667776663 23322111 1335777888888887555555532 24577888888777543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.1e-26 Score=229.35 Aligned_cols=327 Identities=17% Similarity=0.167 Sum_probs=229.9
Q ss_pred hhHHHH--HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh
Q 048810 199 LEKKME--ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 275 (582)
Q Consensus 199 ~~~~~~--~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 275 (582)
.+...| .....++.+|++..|++..+.... .++.||++++..|.-....+|.++| .+..|.+||||+|.+.+.|..
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~ 121 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTN 121 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchh
Confidence 444555 556788999999999997666544 8999999999998667778999997 799999999999999999999
Q ss_pred hhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCccc
Q 048810 276 LDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE 353 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~ 353 (582)
+.+-+++-+|+|++|+|.. | +-+.+|..|-+||+++|++..+|+.+..+.+|++|.++++ .+.......+..+++|+
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhh
Confidence 9999999999999999999 6 4477899999999999999999999999999999999995 44443322355678888
Q ss_pred EEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEecccccc---cccccccccc
Q 048810 354 ELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGEARGR---WFVKSETSRL 429 (582)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~l~~ 429 (582)
.|++++.+.... ..+.++..+.+|+.++++.|++..+|..+ .+.+|++|.++.+.. .. ..+.-..+.+
T Consensus 201 vLhms~TqRTl~-------N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 201 VLHMSNTQRTLD-------NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLET 272 (1255)
T ss_pred hhhcccccchhh-------cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhh
Confidence 999988764433 46788999999999999999999999987 899999999887665 11 1112233344
Q ss_pred ceecccceeehccccchHHHhhhcccceeeccccCc-ccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCc
Q 048810 430 MKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGV-PSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFP 508 (582)
Q Consensus 430 l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 508 (582)
++++.+.-... |..+..+ ++|++|...++... +.+|+. +|.+.+|+++...++ .++-+|. +..-++
T Consensus 273 LNlSrNQLt~L---P~avcKL-~kL~kLy~n~NkL~FeGiPSG---IGKL~~Levf~aanN-~LElVPE-----glcRC~ 339 (1255)
T KOG0444|consen 273 LNLSRNQLTVL---PDAVCKL-TKLTKLYANNNKLTFEGIPSG---IGKLIQLEVFHAANN-KLELVPE-----GLCRCV 339 (1255)
T ss_pred hccccchhccc---hHHHhhh-HHHHHHHhccCcccccCCccc---hhhhhhhHHHHhhcc-ccccCch-----hhhhhH
Confidence 44444332222 4555443 55555555544421 222322 335555555555543 3333331 234445
Q ss_pred ccccccccccccccccccccccCcccCCCccEEEEecccCccccc
Q 048810 509 LLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLF 553 (582)
Q Consensus 509 ~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 553 (582)
+|+.|.+.. +.|-.+|.. +.-+|.|+.|+++.+|+|..-|
T Consensus 340 kL~kL~L~~-NrLiTLPea----IHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 340 KLQKLKLDH-NRLITLPEA----IHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHHhcccc-cceeechhh----hhhcCCcceeeccCCcCccCCC
Confidence 555555543 555555443 3345555555555555554433
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=7.6e-22 Score=226.44 Aligned_cols=319 Identities=21% Similarity=0.245 Sum_probs=227.1
Q ss_pred CCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCC-------CCCChhhhccc-CccEEEcCCCCCCC-ccccCCC
Q 048810 231 PRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGS-------SSLPSSLDRLI-NLQTLCLDGCRLKD-IAKVGQL 301 (582)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-------~~lp~~i~~L~-~L~~L~L~~~~l~~-~~~~~~l 301 (582)
.+.+.+.+.........+....|.+|++|++|.+..+.. ..+|..+..++ +|++|.+.+++++. |..+ .+
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 344444443321233455667788999999998866532 13677777665 58999999888888 5544 67
Q ss_pred CCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCC
Q 048810 302 KKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGL 381 (582)
Q Consensus 302 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 381 (582)
.+|+.|+++++.+..+|.++..+++|+.|++++|..++.+|. ++.+++|++|++.+|..... .+..++++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~--------lp~si~~L 680 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVE--------LPSSIQYL 680 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccc--------cchhhhcc
Confidence 889999999988888888888899999999988877888875 78889999999988765433 56678888
Q ss_pred CCccEEEEEec-ccccCCcccccccccEEEEEeccccccccccccccccceecccceeeh--------------------
Q 048810 382 SKLTTLEIHVR-YAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSI-------------------- 440 (582)
Q Consensus 382 ~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-------------------- 440 (582)
++|+.|+++++ .+..+|..+.+++|+.|.++.|...........+++.+.+........
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchh
Confidence 88898888864 677777777778888888776654222222222333333332221110
Q ss_pred -cc-----ccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccc
Q 048810 441 -LL-----RNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLY 514 (582)
Q Consensus 441 -l~-----~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 514 (582)
++ .++.....+++|+.|++++|.....+|..+. .+++|+.|+|++|..++.+|.. ..+++|+.|+
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~---~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~ 831 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ---NLHKLEHLEIENCINLETLPTG------INLESLESLD 831 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhh---CCCCCCEEECCCCCCcCeeCCC------CCccccCEEE
Confidence 00 0111122346888888888887777776644 8899999999999888887632 3678999999
Q ss_pred ccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcchHHHh
Q 048810 515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELKMII 579 (582)
Q Consensus 515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~ 579 (582)
+++|.++..++. ..++|+.|+++++ .++.+|. .+..+++|+.|++.+|++|+.++
T Consensus 832 Ls~c~~L~~~p~-------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 832 LSGCSRLRTFPD-------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCCCCccccccc-------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccC
Confidence 999988877653 2468999999887 6888874 57899999999999999999875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-23 Score=204.60 Aligned_cols=338 Identities=16% Similarity=0.168 Sum_probs=187.1
Q ss_pred hhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCcc
Q 048810 206 TIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQ 283 (582)
Q Consensus 206 ~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~ 283 (582)
....+++.+++..|.+..+|... ...+++.|++.+| .+.++..+-++-++.||+||||.|.++.+| .++..=.+++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N--~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN--LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeecc--ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 34455666666666666666655 3344666666655 444454444555666666666666666655 2344445666
Q ss_pred EEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchhh-cCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 284 TLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 284 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
+|+|++|.|+. ...|..+.+|.+|.|+.|+++.+|..+ .+|++|+.|++.. ++++.+..-.|.+|++|+.|.+..|
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhc
Confidence 66666666666 355666666666666666666666543 3366666666666 4454443333566666666666666
Q ss_pred ccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEeccc---cccccccccccccceeccc
Q 048810 361 FKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLERL 435 (582)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~~ 435 (582)
.+... .-..+-.+.++++|++..|++..+...- .+..|+.|+++.+.. ..+.....+.++.+.++.+
T Consensus 256 ~I~kL--------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 256 DISKL--------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred Ccccc--------cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 54333 1123445666667777766666554432 666666666655443 1222233445555555544
Q ss_pred ceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccc
Q 048810 436 KSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYL 515 (582)
Q Consensus 436 ~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 515 (582)
.-.+. ++.-...++.|+.|.|+++..-...... +..+.+|++|+|+++. +.....+. .....++|+|++|.+
T Consensus 328 ~i~~l---~~~sf~~L~~Le~LnLs~Nsi~~l~e~a---f~~lssL~~LdLr~N~-ls~~IEDa-a~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 328 RITRL---DEGSFRVLSQLEELNLSHNSIDHLAEGA---FVGLSSLHKLDLRSNE-LSWCIEDA-AVAFNGLPSLRKLRL 399 (873)
T ss_pred ccccC---ChhHHHHHHHhhhhcccccchHHHHhhH---HHHhhhhhhhcCcCCe-EEEEEecc-hhhhccchhhhheee
Confidence 33332 3333333466666666665522111112 2356777777777653 22222221 112344777777777
Q ss_pred cccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeee
Q 048810 516 IGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGV 569 (582)
Q Consensus 516 ~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i 569 (582)
.+ ++++.++-.+|. .+++|++|++.+++ +.++-+. .+.++ .|++|.+
T Consensus 400 ~g-Nqlk~I~krAfs---gl~~LE~LdL~~Na-iaSIq~n-AFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 400 TG-NQLKSIPKRAFS---GLEALEHLDLGDNA-IASIQPN-AFEPM-ELKELVM 446 (873)
T ss_pred cC-ceeeecchhhhc---cCcccceecCCCCc-ceeeccc-ccccc-hhhhhhh
Confidence 77 777777765443 67777777777763 4444432 22344 6666654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.1e-23 Score=201.84 Aligned_cols=342 Identities=15% Similarity=0.127 Sum_probs=258.2
Q ss_pred HhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccC
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLIN 281 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~ 281 (582)
...+...+.|++++|.+..+... .++++|+.+.+..| ....+|... ....+|+.|+|.+|.|+++. +.+..++.
T Consensus 74 g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N--~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 74 GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN--ELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc--hhhhccccc-ccccceeEEeeeccccccccHHHHHhHhh
Confidence 44567788899999998766543 58999999999887 666777632 45667999999999998754 57888999
Q ss_pred ccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcC
Q 048810 282 LQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358 (582)
Q Consensus 282 L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 358 (582)
||.|||+.|.++. + +++..-.++++|+|++|+|+.+-.+ +..+.+|.+|.++. ++++.+|...|.+|++|+.|++.
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcc
Confidence 9999999999988 3 6777778999999999999977543 77788999999999 78999998888889999999998
Q ss_pred CCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEeccc---cccccccccccccceec
Q 048810 359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLE 433 (582)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~ 433 (582)
.|.+... .-..+.+|++|+.|.+..|.+..+.+.. .+.+++.|++..+.. ...|......++.+.++
T Consensus 230 rN~iriv--------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 230 RNRIRIV--------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred ccceeee--------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 8876443 2345788899999999999998888776 888999999876665 34566677777777777
Q ss_pred ccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccc
Q 048810 434 RLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETL 513 (582)
Q Consensus 434 ~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 513 (582)
.+.--++ ...-+++.++|+.|+|+.+...+-.+..+. .+..|++|.|+.+ .+.++-+. ...++.+|++|
T Consensus 302 ~NaI~ri---h~d~WsftqkL~~LdLs~N~i~~l~~~sf~---~L~~Le~LnLs~N-si~~l~e~----af~~lssL~~L 370 (873)
T KOG4194|consen 302 YNAIQRI---HIDSWSFTQKLKELDLSSNRITRLDEGSFR---VLSQLEELNLSHN-SIDHLAEG----AFVGLSSLHKL 370 (873)
T ss_pred hhhhhee---ecchhhhcccceeEeccccccccCChhHHH---HHHHhhhhccccc-chHHHHhh----HHHHhhhhhhh
Confidence 6533332 333445578999999998875444444443 7889999999987 35554322 35567889999
Q ss_pred cccccccccc-cccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810 514 YLIGLANLET-ICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 514 ~l~~~~~L~~-~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
++++ +.+.- +.++..+ ...+++|++|.+.++ +++.+|.- .+..++.||+|++.+.+
T Consensus 371 dLr~-N~ls~~IEDaa~~-f~gl~~LrkL~l~gN-qlk~I~kr-Afsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 371 DLRS-NELSWCIEDAAVA-FNGLPSLRKLRLTGN-QLKSIPKR-AFSGLEALEHLDLGDNA 427 (873)
T ss_pred cCcC-CeEEEEEecchhh-hccchhhhheeecCc-eeeecchh-hhccCcccceecCCCCc
Confidence 9987 44432 2222222 335899999999997 78888763 45779999999987653
No 9
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.86 E-value=5.7e-22 Score=194.72 Aligned_cols=134 Identities=36% Similarity=0.650 Sum_probs=111.1
Q ss_pred cceEEccCCCHHHHHHHHHHhhCCC--CCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHHHHhccccc
Q 048810 4 QKEIQIDVLSKEEALQLFKKIVGDS--MKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE-SLDTWKDVLRQLRSSYAK 80 (582)
Q Consensus 4 ~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~~~W~~~l~~l~~~~~~ 80 (582)
..+|++++|+++||++||++.++.. ..++.+.+.+++|+++|+|+||||+++|++|+.+ +.++|+++++++......
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~ 228 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE 228 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5689999999999999999999833 3456667899999999999999999999999754 889999999998877642
Q ss_pred cccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCccccc
Q 048810 81 EIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEV 139 (582)
Q Consensus 81 ~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~ 139 (582)
..+....+..++.+||+.||.+ +|.||+|||+||+++.|+++.++++|+|||||+..
T Consensus 229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 2234688999999999999997 99999999999999999999999999999999753
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.2e-23 Score=208.18 Aligned_cols=339 Identities=20% Similarity=0.210 Sum_probs=264.8
Q ss_pred HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCC--CCChhhhcccC
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSS--SLPSSLDRLIN 281 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~~L~~ 281 (582)
...+.+++.|.+...++..+|... .+.+|+.|.+..| ....+-.++ +.++.||.+++..|++. ++|..|-.|..
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN--~L~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN--QLISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh--hhHhhhhhh-ccchhhHHHhhhccccccCCCCchhccccc
Confidence 445667788888888888887765 6777777777776 455555554 77888899999888874 48888999999
Q ss_pred ccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCC
Q 048810 282 LQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359 (582)
Q Consensus 282 L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 359 (582)
|..|||+.|+++. |..+...+++-+|++++|+|..+|.. +-+++-|-+||+++ +++..+|+. +..|.+||+|.+++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCC
Confidence 9999999999988 89999999999999999999999987 46788899999998 789999997 78999999999999
Q ss_pred CccccccccCCCccchhhccCCCCccEEEEEecc--cccCCccc-ccccccEEEEEeccc--cccccccccccccceecc
Q 048810 360 SFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRY--AEILPQDL-VSVELQRYKMFIGEA--RGRWFVKSETSRLMKLER 434 (582)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~-~~~~L~~L~l~~~~~--~~~~~~~~~~l~~l~l~~ 434 (582)
|..... .+..+..+++|+.|.+++.+ ..++|..+ .+.+|..++++.+.. .++-....++++.+++++
T Consensus 183 NPL~hf--------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 183 NPLNHF--------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred ChhhHH--------HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence 876544 46677788888888888765 45788877 888898888877665 233445567778888877
Q ss_pred cceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccc
Q 048810 435 LKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLY 514 (582)
Q Consensus 435 ~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 514 (582)
+..... .-.+..+ .+|++|+++.+. ++.+|..+. .+++|+.|.+.++. +.. .....+.+.+..|+++.
T Consensus 255 N~iteL---~~~~~~W-~~lEtLNlSrNQ-Lt~LP~avc---KL~kL~kLy~n~Nk-L~F---eGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 255 NKITEL---NMTEGEW-ENLETLNLSRNQ-LTVLPDAVC---KLTKLTKLYANNNK-LTF---EGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred Cceeee---eccHHHH-hhhhhhccccch-hccchHHHh---hhHHHHHHHhccCc-ccc---cCCccchhhhhhhHHHH
Confidence 654443 3344444 789999999887 566666654 88999999887763 221 11123677888899999
Q ss_pred ccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcchH
Q 048810 515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELK 576 (582)
Q Consensus 515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~ 576 (582)
.++ ++|+-+|.+ +..++.|+.|.+.++ +|.++|. .+.-++.|+.|+++..|+|.
T Consensus 323 aan-N~LElVPEg----lcRC~kL~kL~L~~N-rLiTLPe--aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 323 AAN-NKLELVPEG----LCRCVKLQKLKLDHN-RLITLPE--AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhc-cccccCchh----hhhhHHHHHhccccc-ceeechh--hhhhcCCcceeeccCCcCcc
Confidence 988 788888775 667999999999876 7889984 68899999999999999874
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=9.9e-23 Score=191.95 Aligned_cols=203 Identities=18% Similarity=0.166 Sum_probs=148.5
Q ss_pred hhhhHHHH--HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC
Q 048810 197 ADLEKKME--ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP 273 (582)
Q Consensus 197 ~~~~~~~~--~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 273 (582)
.+.+.+.| .....+++.++.+.|.+..+++.+ .+..+..++..+| ...++|+++ ..+..|..|++.+|.++.+|
T Consensus 100 ~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N--~i~slp~~~-~~~~~l~~l~~~~n~l~~l~ 176 (565)
T KOG0472|consen 100 HNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN--QISSLPEDM-VNLSKLSKLDLEGNKLKALP 176 (565)
T ss_pred cchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc--ccccCchHH-HHHHHHHHhhccccchhhCC
Confidence 34444555 444556677777777777776655 6666666666655 556666665 45677777788888877777
Q ss_pred hhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810 274 SSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL 352 (582)
Q Consensus 274 ~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L 352 (582)
+..-+++.|+.||...|-++. |+.++.+.+|..|++..|++..+| +++.+..|.+|.++. +.++.+|.+...++++|
T Consensus 177 ~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l 254 (565)
T KOG0472|consen 177 ENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSL 254 (565)
T ss_pred HHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccc
Confidence 666567778888877777777 778888888888888888888887 577777888888777 67778887766678888
Q ss_pred cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEec
Q 048810 353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIG 414 (582)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~ 414 (582)
..|++..|.... .+.+++-+++|..|++++|.++.+|..+ .+ +|+.|.+.++
T Consensus 255 ~vLDLRdNklke---------~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 255 LVLDLRDNKLKE---------VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred eeeecccccccc---------CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC
Confidence 888888877544 4788888889999999999998888877 44 6776666533
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=6.4e-21 Score=179.84 Aligned_cols=204 Identities=21% Similarity=0.223 Sum_probs=157.3
Q ss_pred hhhHHHH--HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh
Q 048810 198 DLEKKME--ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS 274 (582)
Q Consensus 198 ~~~~~~~--~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 274 (582)
+.+.+.| ........+++++.|++..+|+.+ ...+++.++++.+ ....+++++ +.+..|..|+..+|++.++|.
T Consensus 78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n--~~~el~~~i-~~~~~l~dl~~~~N~i~slp~ 154 (565)
T KOG0472|consen 78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN--ELKELPDSI-GRLLDLEDLDATNNQISSLPE 154 (565)
T ss_pred chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc--ceeecCchH-HHHhhhhhhhccccccccCch
Confidence 3444444 555666777778888887777765 6777777777776 566667666 567778888888888888888
Q ss_pred hhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCccc
Q 048810 275 SLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE 353 (582)
Q Consensus 275 ~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~ 353 (582)
.+.++..|..|++.+|.++. |+..-+++.|++||...|-++.+|+.++.+.+|..|++.. +.+..+|. |+.+..|.
T Consensus 155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe--f~gcs~L~ 231 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRFLPE--FPGCSLLK 231 (565)
T ss_pred HHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-cccccCCC--CCccHHHH
Confidence 88888888888888888877 6666668888888888888888888888888888888888 67888884 78888888
Q ss_pred EEEcCCCccccccccCCCccchhhcc-CCCCccEEEEEecccccCCccc-ccccccEEEEEeccc
Q 048810 354 ELYMGNSFKRWEKVEGGSNASLVELN-GLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGEA 416 (582)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 416 (582)
+|+++.|++.-. +++.+ ++.++..|+++.|.++.+|..+ .+.+|++|+++.++.
T Consensus 232 Elh~g~N~i~~l---------pae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 232 ELHVGENQIEML---------PAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred HHHhcccHHHhh---------HHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence 888887775443 44544 8899999999999999999988 777899998876554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=5.5e-18 Score=175.95 Aligned_cols=332 Identities=18% Similarity=0.183 Sum_probs=204.4
Q ss_pred CcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcC
Q 048810 210 DPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD 288 (582)
Q Consensus 210 ~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 288 (582)
++++|++++|.+..+|..+ .+++|+.|.++.| .+..+|.+. +++++|++|.|.+|....+|.++..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n--~i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN--YIRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchh--hHhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 4788888888888888776 7788888888876 555666554 78888888888888888888888888888888888
Q ss_pred CCCCCC-ccccCCCCCccEEEeeCC-CCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810 289 GCRLKD-IAKVGQLKKLEVLSFRDS-DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK 366 (582)
Q Consensus 289 ~~~l~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (582)
+|.+.. |..+..+..+..+..++| .+..++. .. ++++++..+.....++.+ ++.+++ .|++.+|... .
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~-~- 192 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME-V- 192 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh-h-
Confidence 888877 777777777777777776 2223322 11 555555543333344433 344443 3555555432 1
Q ss_pred ccCCCccchhhccCCC--------------------CccEEEEEecccccCCcccccccccEEEEEeccc--cccccccc
Q 048810 367 VEGGSNASLVELNGLS--------------------KLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA--RGRWFVKS 424 (582)
Q Consensus 367 ~~~~~~~~~~~l~~l~--------------------~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~ 424 (582)
..+..+. +|+.|..+.|.+.+......-.+|+.++++.... .++|...+
T Consensus 193 ---------~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~ 263 (1081)
T KOG0618|consen 193 ---------LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGAC 263 (1081)
T ss_pred ---------hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhc
Confidence 1122222 2333333333333222222334566666654433 34566666
Q ss_pred cccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccc----
Q 048810 425 ETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVR---- 500 (582)
Q Consensus 425 ~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~---- 500 (582)
.++..+....+.-... |..+... .+|+.|.+..|. ++..+.. .+.+.+|++|++..+ ++..+|+..+
T Consensus 264 ~nle~l~~n~N~l~~l---p~ri~~~-~~L~~l~~~~ne-l~yip~~---le~~~sL~tLdL~~N-~L~~lp~~~l~v~~ 334 (1081)
T KOG0618|consen 264 ANLEALNANHNRLVAL---PLRISRI-TSLVSLSAAYNE-LEYIPPF---LEGLKSLRTLDLQSN-NLPSLPDNFLAVLN 334 (1081)
T ss_pred ccceEecccchhHHhh---HHHHhhh-hhHHHHHhhhhh-hhhCCCc---ccccceeeeeeehhc-cccccchHHHhhhh
Confidence 6655555444332222 3334332 566666666655 3334433 336778888888776 3445544221
Q ss_pred -----------------cccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhh
Q 048810 501 -----------------RVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLW 563 (582)
Q Consensus 501 -----------------~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~ 563 (582)
..+...++.|+.|.+.+ +.|++-+ ++.+..|++|+.|+++++ +|.++|. +.+.++..
T Consensus 335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c---~p~l~~~~hLKVLhLsyN-rL~~fpa-s~~~kle~ 408 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSC---FPVLVNFKHLKVLHLSYN-RLNSFPA-SKLRKLEE 408 (1081)
T ss_pred HHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccc---hhhhccccceeeeeeccc-ccccCCH-HHHhchHH
Confidence 11345566778888877 5555443 333668899999999997 7888887 56788999
Q ss_pred cceeeeccCcchHHHh
Q 048810 564 LQKVGVEECDELKMII 579 (582)
Q Consensus 564 L~~L~i~~C~~L~~i~ 579 (582)
|++|++++ .+|+.|+
T Consensus 409 LeeL~LSG-NkL~~Lp 423 (1081)
T KOG0618|consen 409 LEELNLSG-NKLTTLP 423 (1081)
T ss_pred hHHHhccc-chhhhhh
Confidence 99999988 5666665
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=6.3e-19 Score=147.52 Aligned_cols=166 Identities=23% Similarity=0.325 Sum_probs=143.4
Q ss_pred cCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCC
Q 048810 222 QVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQ 300 (582)
Q Consensus 222 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~ 300 (582)
.+++..++++++..|.++.+ ....+|+.+ ..+++|++|++++|+++++|.+++.++.|+.|++.-|++.. |..+|.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHN--Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHN--KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccC--ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 45566667778888888876 666677776 78999999999999999999999999999999999998887 899999
Q ss_pred CCCccEEEeeCCCCC--ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhc
Q 048810 301 LKKLEVLSFRDSDIE--QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVEL 378 (582)
Q Consensus 301 l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 378 (582)
++.|+.||+..|++. .+|..+..++.|+.|.+++ +..+-+|++ ++++++||.|.+..|.... .+.++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll~---------lpkei 169 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLLS---------LPKEI 169 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchhh---------CcHHH
Confidence 999999999999877 7898888899999999999 678888988 7999999999998886544 38899
Q ss_pred cCCCCccEEEEEecccccCCccc
Q 048810 379 NGLSKLTTLEIHVRYAEILPQDL 401 (582)
Q Consensus 379 ~~l~~L~~L~l~~~~~~~~~~~~ 401 (582)
+.++.|++|++++|++..+|..+
T Consensus 170 g~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHhcccceeeecChhh
Confidence 99999999999999999888765
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=2.9e-17 Score=170.70 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=33.9
Q ss_pred HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP 273 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 273 (582)
......++++.++.|.+...|... .+.+|+++.+..+ ....+|.++ +.+++|++|++++|.+...|
T Consensus 64 it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n--~l~~lP~~~-~~lknl~~LdlS~N~f~~~P 130 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN--RLQSLPASI-SELKNLQYLDLSFNHFGPIP 130 (1081)
T ss_pred hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc--hhhcCchhH-HhhhcccccccchhccCCCc
Confidence 333445555555555555555433 5555555555554 333444443 55555555555555544433
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=7.3e-18 Score=141.21 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=141.7
Q ss_pred HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCcc
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQ 283 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~ 283 (582)
...+..++++.++.|++..+|+.+ .+.+|+.|.++++ ....+|..+ +.+++||.|+++-|.+..+|..++.++-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn--qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN--QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc--hhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhh
Confidence 445678899999999999999887 8999999999987 677788876 899999999999999999999999999999
Q ss_pred EEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 284 TLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 284 ~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
+|||.+|++.+ |..+..+..|+.|+++.|.++.+|+.++++++||.|.+++ +.+-++|.+ ++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccc
Confidence 99999999877 7889999999999999999999999999999999999999 677889988 899999999999998
Q ss_pred ccccc
Q 048810 361 FKRWE 365 (582)
Q Consensus 361 ~~~~~ 365 (582)
.....
T Consensus 184 rl~vl 188 (264)
T KOG0617|consen 184 RLTVL 188 (264)
T ss_pred eeeec
Confidence 76443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=7.6e-15 Score=157.25 Aligned_cols=258 Identities=19% Similarity=0.126 Sum_probs=179.7
Q ss_pred cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcC
Q 048810 209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD 288 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 288 (582)
..-..++++.+.+..+|..+. ++|+.|.+..| ....+|. .+++|++|++++|.++.+|.. ..+|+.|+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N--~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDN--NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCC--cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 456788999999988887653 47899998886 4555654 367899999999999888853 3578889999
Q ss_pred CCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccccc
Q 048810 289 GCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVE 368 (582)
Q Consensus 289 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (582)
+|.++.++. ...+|+.|++++|+++.+|.. +++|++|++++ +.+..+|.. ..+|+.|++++|.+...
T Consensus 271 ~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~L--- 337 (788)
T PRK15387 271 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTSL--- 337 (788)
T ss_pred CCchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCccccc---
Confidence 998887322 235788899999999988863 47899999998 567777652 24677788887765322
Q ss_pred CCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHH
Q 048810 369 GGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMR 448 (582)
Q Consensus 369 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~ 448 (582)
+ .+ ..+|+.|++++|.+..+|.. ..+|+.|.++.+.. . .+ |
T Consensus 338 ------P-~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L-------------------~--~L---P---- 378 (788)
T PRK15387 338 ------P-TL--PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRL-------------------T--SL---P---- 378 (788)
T ss_pred ------c-cc--ccccceEecCCCccCCCCCC--Ccccceehhhcccc-------------------c--cC---c----
Confidence 1 11 14788999999988887753 34555555443222 0 00 2
Q ss_pred HhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccccccccccccc
Q 048810 449 MLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQ 528 (582)
Q Consensus 449 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 528 (582)
..+++|+.|++++|. ++.++. ..++|+.|++++|. +..+|. .+.+|+.|++++ ++++.+|..
T Consensus 379 ~l~~~L~~LdLs~N~-Lt~LP~------l~s~L~~LdLS~N~-LssIP~--------l~~~L~~L~Ls~-NqLt~LP~s- 440 (788)
T PRK15387 379 ALPSGLKELIVSGNR-LTSLPV------LPSELKELMVSGNR-LTSLPM--------LPSGLLSLSVYR-NQLTRLPES- 440 (788)
T ss_pred ccccccceEEecCCc-ccCCCC------cccCCCEEEccCCc-CCCCCc--------chhhhhhhhhcc-CcccccChH-
Confidence 123578889998876 343432 34688999999874 555431 235788888887 778877754
Q ss_pred ccCcccCCCccEEEEecccCcc
Q 048810 529 LREDQSFSNLRIIEVEHCNKLK 550 (582)
Q Consensus 529 ~~~~~~~~~L~~L~l~~c~~L~ 550 (582)
...+++|+.|++++++ +.
T Consensus 441 ---l~~L~~L~~LdLs~N~-Ls 458 (788)
T PRK15387 441 ---LIHLSSETTVNLEGNP-LS 458 (788)
T ss_pred ---HhhccCCCeEECCCCC-CC
Confidence 4578899999999884 44
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.58 E-value=4.3e-15 Score=162.59 Aligned_cols=331 Identities=21% Similarity=0.236 Sum_probs=213.6
Q ss_pred CCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC--CCCCCh-hhhcccCccEEEcCCC-CCCC-
Q 048810 220 GDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG--SSSLPS-SLDRLINLQTLCLDGC-RLKD- 294 (582)
Q Consensus 220 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~~~lp~-~i~~L~~L~~L~L~~~-~l~~- 294 (582)
.....|........|.+.+.++ ....++.. ..++.|+.|-+.++. +..++. .+..++.|++|||++| .+..
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~--~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNN--KIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred CccccccccchhheeEEEEecc--chhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 4444666666778888888876 44445544 355689999998886 555554 4788999999999998 5666
Q ss_pred ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccc
Q 048810 295 IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNAS 374 (582)
Q Consensus 295 ~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 374 (582)
|..|+.|.+||+|+++++.++.+|.++++|+.|.+|++..+..+..+| +++..+.+|++|.+..... ......
T Consensus 588 P~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~------~~~~~~ 660 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSAL------SNDKLL 660 (889)
T ss_pred ChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecccc------ccchhh
Confidence 999999999999999999999999999999999999999977776664 4466699999999877541 122345
Q ss_pred hhhccCCCCccEEEEEecccccCCcccccccccEE----EEEeccc--cccccccccccccceecccceeehc--cccch
Q 048810 375 LVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRY----KMFIGEA--RGRWFVKSETSRLMKLERLKSVSIL--LRNPG 446 (582)
Q Consensus 375 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L----~l~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~l--~~~~~ 446 (582)
+.++.++++|+.+.+...+...+.....+.+|.++ .+..+.. ..........++.+.+..+...... +....
T Consensus 661 l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~ 740 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL 740 (889)
T ss_pred HHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccccccc
Confidence 67778888888888765444111111133333322 2111111 1223445566667777666543221 00111
Q ss_pred HHH-hhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccc-----cCCCCcccccc-cccccc
Q 048810 447 MRM-LLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV-----GCEVFPLLETL-YLIGLA 519 (582)
Q Consensus 447 i~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~~~~~~L~~L-~l~~~~ 519 (582)
... .++++.++.+.+|...++..+.. ..|+|+.|.+..|..++.+....... ....|+++..+ .+.+.+
T Consensus 741 ~~~~~f~~l~~~~~~~~~~~r~l~~~~----f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~ 816 (889)
T KOG4658|consen 741 IVLLCFPNLSKVSILNCHMLRDLTWLL----FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLG 816 (889)
T ss_pred chhhhHHHHHHHHhhccccccccchhh----ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCC
Confidence 111 14677777777777777665533 47899999999998777654322111 12455566666 455555
Q ss_pred cccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccC-cchHHH
Q 048810 520 NLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEEC-DELKMI 578 (582)
Q Consensus 520 ~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C-~~L~~i 578 (582)
.+..+-..++ .++.|+.+.+..||++..+| .+.++.+.+| +.+..+
T Consensus 817 ~l~~i~~~~l----~~~~l~~~~ve~~p~l~~~P---------~~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 817 GLPQLYWLPL----SFLKLEELIVEECPKLGKLP---------LLSTLTIVGCEEKLKEY 863 (889)
T ss_pred CCceeEeccc----CccchhheehhcCcccccCc---------cccccceeccccceeec
Confidence 5555544333 25558888888887776554 4455666665 444433
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=5.5e-14 Score=151.67 Aligned_cols=249 Identities=15% Similarity=0.151 Sum_probs=160.2
Q ss_pred hhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEE
Q 048810 206 TIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTL 285 (582)
Q Consensus 206 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 285 (582)
....+...+.+.++.+..+|..+ .++++.|++.+| ....+|..++ .+|++|++++|.++.+|..+. .+|+.|
T Consensus 175 Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N--~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 175 CLKNNKTELRLKILGLTTIPACI-PEQITTLILDNN--ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred hcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCC--CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEE
Confidence 33455677888888887777654 356888888876 4556776553 478888888888888887654 368888
Q ss_pred EcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 286 CLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 286 ~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
++++|.+.. |..+. .+|++|++++|+++.+|..+. ++|++|++++ +.++.+|.. + .++|+.|++++|.+..
T Consensus 247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 247 ELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-L--PSGITHLNVQSNSLTA 318 (754)
T ss_pred ECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-c--hhhHHHHHhcCCcccc
Confidence 888888777 55443 478888888888888877553 4788888888 467777754 2 2467777777776532
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEecccccccc-ccccccccceecccceeehccc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWF-VKSETSRLMKLERLKSVSILLR 443 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~l~~ 443 (582)
. +..+ .++|+.|++++|.+..+|..+. ++|+.|+++.+.. .... ...+.++.+.+..+.-...
T Consensus 319 L---------P~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L-~~LP~~lp~~L~~LdLs~N~Lt~L--- 382 (754)
T PRK15370 319 L---------PETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQI-TVLPETLPPTITTLDVSRNALTNL--- 382 (754)
T ss_pred C---------Cccc--cccceeccccCCccccCChhhc-CcccEEECCCCCC-CcCChhhcCCcCEEECCCCcCCCC---
Confidence 2 1122 2467778888887777776543 5777777766543 1110 1123455566655533333
Q ss_pred cchHHHhhhcccceeeccccCcccccccccC-CCCCCCCcEEEEeecC
Q 048810 444 NPGMRMLLQRTEDLWLETLEGVPSVVHELDD-GEGFPRLKHLYVESCS 490 (582)
Q Consensus 444 ~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 490 (582)
|..++ .+|+.|++++|.. ..+|..+.. .+.+|++..|.+.+++
T Consensus 383 P~~l~---~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 383 PENLP---AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CHhHH---HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 55443 4678888888763 344443210 2345778888888775
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=9.5e-14 Score=148.91 Aligned_cols=245 Identities=17% Similarity=0.070 Sum_probs=163.5
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhc
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDR 278 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~ 278 (582)
.+..+|...+..++.|++.+|.+..+|.. .++|++|++++| ....+|. ..++|+.|++++|.++.+|...
T Consensus 212 ~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N--~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~lp-- 281 (788)
T PRK15387 212 GLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN--QLTSLPV----LPPGLLELSIFSNPLTHLPALP-- 281 (788)
T ss_pred CCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC--ccCcccC----cccccceeeccCCchhhhhhch--
Confidence 45556654556899999999999988864 589999999987 4555664 2468999999999998888633
Q ss_pred ccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcC
Q 048810 279 LINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358 (582)
Q Consensus 279 L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 358 (582)
.+|+.|++++|+++..+. .+++|++|++++|.++.+|.. ..+|+.|++++ +.++.+|. + ..+|+.|+++
T Consensus 282 -~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~--l--p~~Lq~LdLS 350 (788)
T PRK15387 282 -SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYN-NQLTSLPT--L--PSGLQELSVS 350 (788)
T ss_pred -hhcCEEECcCCccccccc--cccccceeECCCCccccCCCC---ccccccccccc-Cccccccc--c--ccccceEecC
Confidence 568889999999888322 247899999999999888763 24677888888 56777774 2 2578899998
Q ss_pred CCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceeccccee
Q 048810 359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSV 438 (582)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~ 438 (582)
+|.+... +. + ..+|+.|++++|.+..+|.. ..+|+.|+++.+.. .........++.+.+..+.-.
T Consensus 351 ~N~Ls~L---------P~-l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~L-t~LP~l~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 351 DNQLASL---------PT-L--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRL-TSLPVLPSELKELMVSGNRLT 415 (788)
T ss_pred CCccCCC---------CC-C--CcccceehhhccccccCccc--ccccceEEecCCcc-cCCCCcccCCCEEEccCCcCC
Confidence 8875432 11 1 24677788888888877754 35677887765554 222122233444444443221
Q ss_pred ehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810 439 SILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS 490 (582)
Q Consensus 439 ~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 490 (582)
.+ |. .+.+|+.|++++|. ++.+|..+. .+++|+.|++++|+
T Consensus 416 sI---P~----l~~~L~~L~Ls~Nq-Lt~LP~sl~---~L~~L~~LdLs~N~ 456 (788)
T PRK15387 416 SL---PM----LPSGLLSLSVYRNQ-LTRLPESLI---HLSSETTVNLEGNP 456 (788)
T ss_pred CC---Cc----chhhhhhhhhccCc-ccccChHHh---hccCCCeEECCCCC
Confidence 11 22 23456667776665 344554433 66777777777764
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=1e-13 Score=149.55 Aligned_cols=234 Identities=14% Similarity=0.159 Sum_probs=172.7
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhc
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDR 278 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~ 278 (582)
.+..+|...+..++.|++++|.+..+|.... ++|++|++.+| ....+|..+. .+|+.|++++|.+..+|..+.
T Consensus 189 ~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N--~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~- 261 (754)
T PRK15370 189 GLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSN--QLTSIPATLP---DTIQEMELSINRITELPERLP- 261 (754)
T ss_pred CcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCC--ccccCChhhh---ccccEEECcCCccCcCChhHh-
Confidence 4455565566789999999999999887653 68999999987 4557777553 579999999999999998775
Q ss_pred ccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEc
Q 048810 279 LINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYM 357 (582)
Q Consensus 279 L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l 357 (582)
.+|++|++++|+++. |..+. .+|++|++++|+++.+|..+. .+|++|++++ +.+..+|.. + .++|+.|++
T Consensus 262 -s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~L 332 (754)
T PRK15370 262 -SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLEA 332 (754)
T ss_pred -CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceeccc
Confidence 489999999999988 65554 589999999999999987543 5799999998 567778764 2 368999999
Q ss_pred CCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccc-cccccccceecccc
Q 048810 358 GNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFV-KSETSRLMKLERLK 436 (582)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~l~l~~~~ 436 (582)
++|.+... +..+. ++|+.|++++|.+..+|..+ .++|+.|+++.+.. ..+.. ....++.+.+..+.
T Consensus 333 s~N~Lt~L---------P~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~L-t~LP~~l~~sL~~LdLs~N~ 399 (754)
T PRK15370 333 GENALTSL---------PASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNAL-TNLPENLPAALQIMQASRNN 399 (754)
T ss_pred cCCccccC---------Chhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcC-CCCCHhHHHHHHHHhhccCC
Confidence 98865432 23332 68999999999998887765 36899999887665 22211 12245556666554
Q ss_pred eeehccccchHHHh---hhcccceeeccccC
Q 048810 437 SVSILLRNPGMRML---LQRTEDLWLETLEG 464 (582)
Q Consensus 437 ~~~~l~~~~~i~~~---~~~L~~L~L~~~~~ 464 (582)
-... |.+++.+ .+++..|.+.+|+.
T Consensus 400 L~~L---P~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 400 LVRL---PESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cccC---chhHHHHhhcCCCccEEEeeCCCc
Confidence 3333 6555544 36678899988774
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.36 E-value=8.6e-15 Score=138.64 Aligned_cols=269 Identities=16% Similarity=0.177 Sum_probs=155.1
Q ss_pred cccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccCccEEEcCC-CCCCC-c-cccCCCCCccEEEeeCCCCCccch
Q 048810 244 CSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLINLQTLCLDG-CRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL 319 (582)
Q Consensus 244 ~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~~L~L~~-~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~ 319 (582)
.+..+|+..|+.+++||.||||+|.|+. -|..+..|.+|-.|-+.+ |+|++ | ..|++|..|+.|.+.-|.+..++.
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ 157 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence 4556677778888889999999988877 467788888887777666 78888 4 668888888888888888886654
Q ss_pred -hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccc-cccC---CCccchhhccCCCCccEEEEEeccc
Q 048810 320 -EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE-KVEG---GSNASLVELNGLSKLTTLEIHVRYA 394 (582)
Q Consensus 320 -~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~-~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~ 394 (582)
.+..+++|..|.+.+ +.+..++.+.+..+..++++.+..|.+... +.++ .....+.+++..+......+...++
T Consensus 158 ~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri 236 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI 236 (498)
T ss_pred HHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh
Confidence 477888888888888 678888887788888888888766542111 0000 0000111222222222222222222
Q ss_pred ccCCcccccccccEEEEEeccccccccccccccccceecccceeehcccc-chHHHhhhcccceeeccccCccccccccc
Q 048810 395 EILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN-PGMRMLLQRTEDLWLETLEGVPSVVHELD 473 (582)
Q Consensus 395 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~-~~i~~~~~~L~~L~L~~~~~~~~~~~~~~ 473 (582)
...++.-....++++.- .+... +..... .| ..+.. +++|++|+|+++.....-..+|.
T Consensus 237 ~q~~a~kf~c~~esl~s-----------------~~~~~-d~~d~~--cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 237 NQEDARKFLCSLESLPS-----------------RLSSE-DFPDSI--CPAKCFKK-LPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred cccchhhhhhhHHhHHH-----------------hhccc-cCcCCc--ChHHHHhh-cccceEeccCCCccchhhhhhhc
Confidence 22221111111111100 00000 000000 01 12333 47888888887775444444443
Q ss_pred CCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecc
Q 048810 474 DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHC 546 (582)
Q Consensus 474 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c 546 (582)
....+++|.+.++ +++.+... ...++..|+.|++.+ ++++.+.++.|. ...+|.+|++-.+
T Consensus 296 ---~~a~l~eL~L~~N-~l~~v~~~----~f~~ls~L~tL~L~~-N~it~~~~~aF~---~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 296 ---GAAELQELYLTRN-KLEFVSSG----MFQGLSGLKTLSLYD-NQITTVAPGAFQ---TLFSLSTLNLLSN 356 (498)
T ss_pred ---chhhhhhhhcCcc-hHHHHHHH----hhhccccceeeeecC-CeeEEEeccccc---ccceeeeeehccC
Confidence 6777788888776 34444211 345566777777777 677766655443 4556666766543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=1.7e-13 Score=129.93 Aligned_cols=293 Identities=17% Similarity=0.138 Sum_probs=165.8
Q ss_pred cccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeC-CCCCccch
Q 048810 244 CSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRD-SDIEQLPL 319 (582)
Q Consensus 244 ~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~-~~l~~lp~ 319 (582)
....+|.++ ...-..++|..|.|+.+|+ .|+.+++||.|||+.|.|+. |..|..+.+|..|-+.+ |+|+.+|.
T Consensus 57 GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 444555543 3345567777777777764 56777777777777777776 67777777777666666 67777776
Q ss_pred h-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCC
Q 048810 320 E-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILP 398 (582)
Q Consensus 320 ~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 398 (582)
+ +++|..|+.|.+.- +++..++.+.+..+++|..|.+.+|.+... .-..+..+..++.+.+..|.....-
T Consensus 134 ~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i--------~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSI--------CKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred hHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhh--------ccccccchhccchHhhhcCcccccc
Confidence 5 56677777777665 456666666677777777777776654433 2224555666666665544311000
Q ss_pred cccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccce--eeccccCcccccccccCCC
Q 048810 399 QDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDL--WLETLEGVPSVVHELDDGE 476 (582)
Q Consensus 399 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L--~L~~~~~~~~~~~~~~~~~ 476 (582)
.++.+..... .......|..-. ....+.-......+ +..+. -+++.+ .+..........+... ++
T Consensus 205 ---nL~wla~~~a-~~~ietsgarc~-~p~rl~~~Ri~q~~----a~kf~---c~~esl~s~~~~~d~~d~~cP~~c-f~ 271 (498)
T KOG4237|consen 205 ---NLPWLADDLA-MNPIETSGARCV-SPYRLYYKRINQED----ARKFL---CSLESLPSRLSSEDFPDSICPAKC-FK 271 (498)
T ss_pred ---ccchhhhHHh-hchhhcccceec-chHHHHHHHhcccc----hhhhh---hhHHhHHHhhccccCcCCcChHHH-Hh
Confidence 0111100000 000001111100 00011000000000 01111 112222 1111111111111111 45
Q ss_pred CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChh
Q 048810 477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFS 556 (582)
Q Consensus 477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 556 (582)
.+|+|++|+++++ .++.+.+. ...+...++.|.+.+ ++++.+..+.|. .+..|+.|++.++ +++.+.+ .
T Consensus 272 ~L~~L~~lnlsnN-~i~~i~~~----aFe~~a~l~eL~L~~-N~l~~v~~~~f~---~ls~L~tL~L~~N-~it~~~~-~ 340 (498)
T KOG4237|consen 272 KLPNLRKLNLSNN-KITRIEDG----AFEGAAELQELYLTR-NKLEFVSSGMFQ---GLSGLKTLSLYDN-QITTVAP-G 340 (498)
T ss_pred hcccceEeccCCC-ccchhhhh----hhcchhhhhhhhcCc-chHHHHHHHhhh---ccccceeeeecCC-eeEEEec-c
Confidence 8999999999997 45555433 455667899999988 889888776554 7789999999998 7887765 3
Q ss_pred HHhhhhhcceeeeccC
Q 048810 557 MAKNLLWLQKVGVEEC 572 (582)
Q Consensus 557 ~~~~l~~L~~L~i~~C 572 (582)
.++.+.+|.+|.+-..
T Consensus 341 aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSN 356 (498)
T ss_pred cccccceeeeeehccC
Confidence 5688999999988543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=9.4e-13 Score=130.57 Aligned_cols=177 Identities=21% Similarity=0.312 Sum_probs=149.9
Q ss_pred cCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810 209 KDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL 287 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 287 (582)
......+++.|.+..+|... .+-.|..+.+..| ..-.+|..+ ..+..|.+|+|+.|++..+|..++.|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n--~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHN--CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhc--cceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 34556778888888888766 6677888888776 555666665 788999999999999999999998887 899999
Q ss_pred CCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810 288 DGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK 366 (582)
Q Consensus 288 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (582)
++|+++. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|.+.. +.+..+|++ +..| .|..|+++.|.+...
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-pLi~lDfScNkis~i- 226 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-PLIRLDFSCNKISYL- 226 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-ceeeeecccCceeec-
Confidence 9999998 8999988999999999999999999999999999999998 678888887 6655 488999998877654
Q ss_pred ccCCCccchhhccCCCCccEEEEEecccccCCccc
Q 048810 367 VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL 401 (582)
Q Consensus 367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 401 (582)
+..+.+|++|+.|-|.+|.+.+-|..+
T Consensus 227 --------Pv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 227 --------PVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred --------chhhhhhhhheeeeeccCCCCCChHHH
Confidence 888999999999999999998888776
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=1.6e-12 Score=129.79 Aligned_cols=137 Identities=23% Similarity=0.218 Sum_probs=70.0
Q ss_pred HhcCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC--------ccccCCCCCccEEEeeCCCCC-cc
Q 048810 252 FFEGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD--------IAKVGQLKKLEVLSFRDSDIE-QL 317 (582)
Q Consensus 252 ~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--------~~~~~~l~~L~~L~l~~~~l~-~l 317 (582)
+|..+.+|++|+++++.++. ++..+...++|++|+++++.+.. +..+..+++|++|++++|.+. ..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 34555667777777766532 44455556666777766665541 134555666666666666554 23
Q ss_pred chhhcCCCC---CCEEcccccccccc-----cCcccccCC-CcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810 318 PLEIGQLRR---LQLLDLSNCWTLEV-----IAPNVISKL-SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388 (582)
Q Consensus 318 p~~i~~l~~---L~~L~l~~~~~l~~-----lp~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 388 (582)
+..+..+.+ |++|++++|. +.. +.. .+..+ ++|+.|++++|.+... ........+..+++|++|+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGA----SCEALAKALRANRDLKELN 171 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH-HHHhCCCCceEEEcCCCcCCch----HHHHHHHHHHhCCCcCEEE
Confidence 333333333 6666666643 221 111 13344 5666666666654321 0011233344555566666
Q ss_pred EEeccc
Q 048810 389 IHVRYA 394 (582)
Q Consensus 389 l~~~~~ 394 (582)
+++|.+
T Consensus 172 l~~n~l 177 (319)
T cd00116 172 LANNGI 177 (319)
T ss_pred CcCCCC
Confidence 555443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=2e-12 Score=128.31 Aligned_cols=188 Identities=21% Similarity=0.205 Sum_probs=156.6
Q ss_pred EEEecCCCCcCCCCC---CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCC
Q 048810 213 AISLPYRGDQVLPQR---MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDG 289 (582)
Q Consensus 213 ~l~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~ 289 (582)
++.|++..++.+|.. ..+.--...+++.| ....+|.++ ..+..|..+.+..|.+..+|..+++|..|.+|+|+.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN--R~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRN--RFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccc--ccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence 455666666665543 24555566777766 556677665 678899999999999999999999999999999999
Q ss_pred CCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccccc
Q 048810 290 CRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVE 368 (582)
Q Consensus 290 ~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (582)
|+++. |..++.|+ |+.|-+++|+++.+|..++.++.|.+||.+. +.+..+|.. ++.+.+|+.|++..|....
T Consensus 131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~~---- 203 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLED---- 203 (722)
T ss_pred chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhhh----
Confidence 99998 88888776 9999999999999999999889999999998 568888887 8999999999998887544
Q ss_pred CCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEeccc
Q 048810 369 GGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGEA 416 (582)
Q Consensus 369 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 416 (582)
.+.++..|+ |..|++++|++..+|..+ .+..|+.|.+..+..
T Consensus 204 -----lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 204 -----LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred -----CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 478888665 899999999999999998 899999998865543
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=1.7e-11 Score=122.42 Aligned_cols=181 Identities=22% Similarity=0.163 Sum_probs=92.7
Q ss_pred cCcEEEEecCCCCcC-----CCCCC-CCCCccEEEeeccCcc----ccccChHHhcCCCCccEEEcCCCCCCC-CChhhh
Q 048810 209 KDPIAISLPYRGDQV-----LPQRM-RCPRLGLFLLHTIGLC----SIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLD 277 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~----~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~ 277 (582)
..++.+.+.++.+.. ++... ..+.++.+.+.++... ........+..+++|+.|+++++.+.. .+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 346666666666521 22222 3445666666554111 001111234556677777777776653 344444
Q ss_pred cccC---ccEEEcCCCCCCC------ccccCCC-CCccEEEeeCCCCC-----ccchhhcCCCCCCEEccccccccc---
Q 048810 278 RLIN---LQTLCLDGCRLKD------IAKVGQL-KKLEVLSFRDSDIE-----QLPLEIGQLRRLQLLDLSNCWTLE--- 339 (582)
Q Consensus 278 ~L~~---L~~L~L~~~~l~~------~~~~~~l-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~--- 339 (582)
.+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|. ++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHH
Confidence 4444 7777777776653 1334555 66777777776655 334445556667777776643 22
Q ss_pred --ccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810 340 --VIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE 395 (582)
Q Consensus 340 --~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 395 (582)
.++.. +...++|++|++++|.+... ........+..+++|+.|++++|.+.
T Consensus 182 ~~~l~~~-l~~~~~L~~L~L~~n~i~~~----~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 182 IRALAEG-LKANCNLEVLDLNNNGLTDE----GASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHH-HHhCCCCCEEeccCCccChH----HHHHHHHHhcccCCCCEEecCCCcCc
Confidence 12221 33445666777666654321 00112233455566666666665543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=5.8e-11 Score=104.69 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=28.1
Q ss_pred CCCCccEEEcCCCCCCCCChhhh-cccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhh-cCCCCCCEEcc
Q 048810 255 GMEGLKVLQFPGIGSSSLPSSLD-RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDL 332 (582)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~i~-~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l 332 (582)
+...+|.|+|+++.|+.+. .++ .+.+|+.|++++|.++..+.+..+++|++|++++|+|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445666666666666543 344 45666666666666666666666666666666666666665444 24666666666
Q ss_pred cccccccccCc-ccccCCCcccEEEcCCCc
Q 048810 333 SNCWTLEVIAP-NVISKLSRLEELYMGNSF 361 (582)
Q Consensus 333 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~ 361 (582)
++ +.+..+.. ..+..+++|+.|++.+|+
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 66 33433221 113445555555555554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3.3e-10 Score=99.90 Aligned_cols=103 Identities=22% Similarity=0.267 Sum_probs=22.9
Q ss_pred cCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhh-hcccCccEEE
Q 048810 209 KDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-DRLINLQTLC 286 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~L~~L~~L~ 286 (582)
.+.+.|++.++.+..+.... .+.+|+.|++++| ....+.. +..++.|+.|++++|.++++++.+ ..+++|+.|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N--~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNN--QITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCC--CCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34556666666655543322 3444555555544 2222322 234455555555555554444333 2344555555
Q ss_pred cCCCCCCC---ccccCCCCCccEEEeeCCCCC
Q 048810 287 LDGCRLKD---IAKVGQLKKLEVLSFRDSDIE 315 (582)
Q Consensus 287 L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~ 315 (582)
+++|++.+ ...+..+++|++|++.+|.+.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55554443 233444444555555444443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=4.4e-11 Score=109.76 Aligned_cols=186 Identities=14% Similarity=0.141 Sum_probs=141.9
Q ss_pred HhhccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCc--cccccChHH-------------------hcCCCCccEE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGL--CSIQVSDHF-------------------FEGMEGLKVL 262 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~--~~~~~~~~~-------------------~~~l~~Lr~L 262 (582)
....+++..+.++.+.-+.+.... .-+.|+++.+..... ...-+|... ....+.|..|
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred hHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 344566677777766655444332 446677777765410 000111111 0124678999
Q ss_pred EcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccC
Q 048810 263 QFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIA 342 (582)
Q Consensus 263 ~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 342 (582)
|||+|.|+.+-+++.-++.+|.|+++.|.+....++..|++|+.||+++|.++++..+-.++.|+++|.+.+ +.+..+.
T Consensus 290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LS 368 (490)
T KOG1259|consen 290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIETLS 368 (490)
T ss_pred cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHhhhh
Confidence 999999999999999999999999999999998889999999999999999998887778899999999999 6788776
Q ss_pred cccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcc
Q 048810 343 PNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD 400 (582)
Q Consensus 343 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 400 (582)
. ++++-+|..|++++|.+... .....+++++.|+.+.+.+|.+..+++.
T Consensus 369 G--L~KLYSLvnLDl~~N~Ie~l-------deV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 369 G--LRKLYSLVNLDLSSNQIEEL-------DEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred h--hHhhhhheeccccccchhhH-------HHhcccccccHHHHHhhcCCCccccchH
Confidence 4 88999999999999986543 2467789999999999999988766654
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.84 E-value=2.7e-09 Score=109.79 Aligned_cols=171 Identities=25% Similarity=0.233 Sum_probs=95.7
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCC-CccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccE
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGME-GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEV 306 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~ 306 (582)
..+.++.|.+..+ ....+++.. ..++ +|+.|++++|.+..+|..++.+++|+.|+++.|++.. +...+.+.+|+.
T Consensus 114 ~~~~l~~L~l~~n--~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNN--NITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCc--ccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 4455555555554 344444433 2332 5666666666666665556666666666666666666 444446666666
Q ss_pred EEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccE
Q 048810 307 LSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTT 386 (582)
Q Consensus 307 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 386 (582)
|++++|.+..+|..++.+..|++|.++++. ....+.. ++.++++..+.+.++.... .+..++.+.+++.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~~---------~~~~~~~l~~l~~ 259 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLED---------LPESIGNLSNLET 259 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceeee---------ccchhccccccce
Confidence 666666666666655555556666666632 2222222 4556666665554443321 1345566666777
Q ss_pred EEEEecccccCCcccccccccEEEEEe
Q 048810 387 LEIHVRYAEILPQDLVSVELQRYKMFI 413 (582)
Q Consensus 387 L~l~~~~~~~~~~~~~~~~L~~L~l~~ 413 (582)
|++++|.+..++......+++.|+++.
T Consensus 260 L~~s~n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 260 LDLSNNQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred eccccccccccccccccCccCEEeccC
Confidence 777777666666533556666666543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.2e-09 Score=105.64 Aligned_cols=208 Identities=20% Similarity=0.073 Sum_probs=143.8
Q ss_pred HhhccCcEEEEecCCCCcCCCC---CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh--hhcc
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQ---RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS--LDRL 279 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--i~~L 279 (582)
....++++.+++.++.+...+. ...|++++.|+++.|-.........+...+++|+.|+++.|.+...-++ -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4456788999999998877764 3389999999999872222233345567899999999999987543222 2367
Q ss_pred cCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCC-CCccchhhcCCCCCCEEcccccccccccCc-ccccCCCcccE
Q 048810 280 INLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSD-IEQLPLEIGQLRRLQLLDLSNCWTLEVIAP-NVISKLSRLEE 354 (582)
Q Consensus 280 ~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~ 354 (582)
.+|+.|.++.|.++. ....-.+++|..|++..|. +..--.....++.|+.||+++++. ...+. ..++.++.|..
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhh
Confidence 799999999999886 3556678999999999984 332222345577899999999554 44441 23678999999
Q ss_pred EEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc---ccccccEEEEEecc
Q 048810 355 LYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL---VSVELQRYKMFIGE 415 (582)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~ 415 (582)
|+++.|.+..... -...........++|+.|++..|++..++..- .+++|+.|.+....
T Consensus 276 Lnls~tgi~si~~--~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 276 LNLSSTGIASIAE--PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhccccCcchhcC--CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 9998886544311 11112223456789999999999887666542 56677777654433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=6.5e-09 Score=106.99 Aligned_cols=178 Identities=24% Similarity=0.248 Sum_probs=150.2
Q ss_pred ccCcEEEEecCCCCcCCCCCCCCC--CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEE
Q 048810 208 RKDPIAISLPYRGDQVLPQRMRCP--RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTL 285 (582)
Q Consensus 208 ~~~~~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 285 (582)
...+..+.+.++.+..++...... +|+.|++..+ ....++..+ ..++.|+.|++++|.+..+|...+.+..|+.|
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N--~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN--KIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhccccccccc--chhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 357899999999999999888654 8999999987 555554443 78999999999999999999988899999999
Q ss_pred EcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 286 CLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 286 ~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
++++|++.. |..+..+.+|++|.+++|.+.+.+..+.++.++..+.+.+ +.+..++.. ++.+++|+.|++++|.+..
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceeccccccccc
Confidence 999999999 6666788889999999998888888899999999999777 566665554 7899999999999987643
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccccCCcc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD 400 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 400 (582)
. ..++.+.+++.|+++++.+...+..
T Consensus 270 i----------~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 270 I----------SSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred c----------ccccccCccCEEeccCccccccchh
Confidence 3 3388999999999999887655443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.3e-09 Score=98.65 Aligned_cols=127 Identities=24% Similarity=0.228 Sum_probs=75.9
Q ss_pred CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCc-cccCCCCCccEEE
Q 048810 230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI-AKVGQLKKLEVLS 308 (582)
Q Consensus 230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~-~~~~~l~~L~~L~ 308 (582)
...|+++++++| .+..+.++. .-.+.+|+|++|+|.+..+-. +..|++|+.|||++|.++.. ..-.+|-|.++|.
T Consensus 283 Wq~LtelDLS~N--~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGN--LITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccccc--chhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 345666666665 344444433 456667777777777665443 66666777777777766663 2234556666777
Q ss_pred eeCCCCCccchhhcCCCCCCEEcccccccccccCc-ccccCCCcccEEEcCCCcc
Q 048810 309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAP-NVISKLSRLEELYMGNSFK 362 (582)
Q Consensus 309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~ 362 (582)
+++|.+..+. +++++.+|..||+++ +++..+.. ..||+++.|+++.+.+|.+
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 7776666553 466677777777776 33433221 1266777777777776654
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.6e-09 Score=101.08 Aligned_cols=210 Identities=20% Similarity=0.143 Sum_probs=111.7
Q ss_pred CCCCCccEEEeeCCCCCccch--hhcCCCCCCEEcccccccccccC--cccccCCCcccEEEcCCCccccccccCCCccc
Q 048810 299 GQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLSNCWTLEVIA--PNVISKLSRLEELYMGNSFKRWEKVEGGSNAS 374 (582)
Q Consensus 299 ~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 374 (582)
+++.+|+...+.++.+...+. ....+++++.||++.+ -+...- ..+..++++|+.|+++.|..... ..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~~------ 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-IS------ 189 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCC-cc------
Confidence 456777777787777776653 5667777777777773 332211 11234667777777766654333 00
Q ss_pred hhhccCCCCccEEEEEeccccc--CCccc-ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhh
Q 048810 375 LVELNGLSKLTTLEIHVRYAEI--LPQDL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLL 451 (582)
Q Consensus 375 ~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~ 451 (582)
-..-..+++|+.|.++.+.++. +...+ .+++|+.|.+..+. .+.. ...-...+
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~---------------------~~~~---~~~~~~i~ 245 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE---------------------IILI---KATSTKIL 245 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc---------------------ccce---ecchhhhh
Confidence 0001134455555555554441 00001 34444444433221 1111 01111234
Q ss_pred hcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeee--cccccccCCCCcccccccccccccccccccccc
Q 048810 452 QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIV--GSVRRVGCEVFPLLETLYLIGLANLETICCSQL 529 (582)
Q Consensus 452 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 529 (582)
+.|+.|+|+++..+....... .+.||.|..|.++.| .+.++. +.+.......||+|+.|++.. ++..+|+. +
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~--~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~s--l 319 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYK--VGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRS--L 319 (505)
T ss_pred hHHhhccccCCcccccccccc--cccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccc--c
Confidence 678888888887655432111 568888888888876 333332 111112346788888888877 66666643 2
Q ss_pred cCcccCCCccEEEEecc
Q 048810 530 REDQSFSNLRIIEVEHC 546 (582)
Q Consensus 530 ~~~~~~~~L~~L~l~~c 546 (582)
.++..+++|+.|.+...
T Consensus 320 ~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLN 336 (505)
T ss_pred chhhccchhhhhhcccc
Confidence 33556677777766543
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.63 E-value=1.5e-09 Score=104.51 Aligned_cols=305 Identities=17% Similarity=0.069 Sum_probs=165.5
Q ss_pred cCcEEEEecCCCCcCCCC---C-CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC-CCC--CChhhhcccC
Q 048810 209 KDPIAISLPYRGDQVLPQ---R-MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG-SSS--LPSSLDRLIN 281 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~---~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~--lp~~i~~L~~ 281 (582)
..++.+++.++.-....+ . ..+++++.|.+.++.........++-..+++|++|++..|. ++. +-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456777777765422222 1 26777777777766222222222333567888888888743 443 1223346778
Q ss_pred ccEEEcCCCC-CCC--c-cccCCCCCccEEEeeCCC-C--CccchhhcCCCCCCEEcccccccccccCccccc-CCCccc
Q 048810 282 LQTLCLDGCR-LKD--I-AKVGQLKKLEVLSFRDSD-I--EQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVIS-KLSRLE 353 (582)
Q Consensus 282 L~~L~L~~~~-l~~--~-~~~~~l~~L~~L~l~~~~-l--~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~-~l~~L~ 353 (582)
|.||++++|. +++ . .-..+...++.+.++||. + ..+-.--+...-+..+++..|+.+++.....+. .+..||
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888884 444 2 334455556666666651 1 122222234445666666677666554322122 356677
Q ss_pred EEEcCCCccccccccCCCccchhhcc-CCCCccEEEEEeccc-ccCCcccccccccEEEEEeccccccccccccccccce
Q 048810 354 ELYMGNSFKRWEKVEGGSNASLVELN-GLSKLTTLEIHVRYA-EILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMK 431 (582)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 431 (582)
.|..+++..... ..+..++ +..+|+.|.+..++. +..
T Consensus 298 ~l~~s~~t~~~d-------~~l~aLg~~~~~L~~l~l~~c~~fsd~---------------------------------- 336 (483)
T KOG4341|consen 298 VLCYSSCTDITD-------EVLWALGQHCHNLQVLELSGCQQFSDR---------------------------------- 336 (483)
T ss_pred hhcccCCCCCch-------HHHHHHhcCCCceEEEeccccchhhhh----------------------------------
Confidence 777766643221 1222232 334555555543321 000
Q ss_pred ecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccc
Q 048810 432 LERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLE 511 (582)
Q Consensus 432 l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 511 (582)
. ...+..-.+.|+.+++..+..+.+.... ....++|.|++|.++.|..++.-..........+...|+
T Consensus 337 -----~------ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~ 404 (483)
T KOG4341|consen 337 -----G------FTMLGRNCPHLERLDLEECGLITDGTLA-SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE 404 (483)
T ss_pred -----h------hhhhhcCChhhhhhcccccceehhhhHh-hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence 0 0111122356677777666654443111 113468888888888876544321111112345667788
Q ss_pred cccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeee
Q 048810 512 TLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGV 569 (582)
Q Consensus 512 ~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i 569 (582)
.+.+++|+.+++-.-. ....+++|+.+++.+|.....-+.....+++|+++....
T Consensus 405 ~lEL~n~p~i~d~~Le---~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 405 VLELDNCPLITDATLE---HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred eeeecCCCCchHHHHH---HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 8888888876554322 245778888888888888777666666777887776544
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=5.3e-09 Score=100.73 Aligned_cols=287 Identities=18% Similarity=0.176 Sum_probs=163.4
Q ss_pred CCccEEEcCCCCCCC---CChhhhcccCccEEEcCCC-CCCC--ccc-cCCCCCccEEEeeCC-CCC--ccchhhcCCCC
Q 048810 257 EGLKVLQFPGIGSSS---LPSSLDRLINLQTLCLDGC-RLKD--IAK-VGQLKKLEVLSFRDS-DIE--QLPLEIGQLRR 326 (582)
Q Consensus 257 ~~Lr~L~l~~~~~~~---lp~~i~~L~~L~~L~L~~~-~l~~--~~~-~~~l~~L~~L~l~~~-~l~--~lp~~i~~l~~ 326 (582)
..||.|.+.++.-.. +-....++++++.|.+.+| ++++ ..+ -..+++|++|++..| .++ .+-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 467778888775322 3334567788888888888 4555 333 345678888888875 555 22223456788
Q ss_pred CCEEcccccccccc--cCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe-cccccCCccc--
Q 048810 327 LQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV-RYAEILPQDL-- 401 (582)
Q Consensus 327 L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~-- 401 (582)
|.+|+++.|..++. +.. ...+++.++.+...+|..... +.....=+....+.++++.. +.++......
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l------e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL------EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH------HHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 88888888876655 111 133455566666655532211 00111111222233333322 1222111110
Q ss_pred -ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCC
Q 048810 402 -VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPR 480 (582)
Q Consensus 402 -~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 480 (582)
.+..|+.+..+.+. ...... -...+...++|+.|.+..|...++...... ..+++.
T Consensus 291 ~~c~~lq~l~~s~~t---------------------~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~ 347 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCT---------------------DITDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPH 347 (483)
T ss_pred hhhhHhhhhcccCCC---------------------CCchHH-HHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChh
Confidence 23344444332222 111100 011222247888999988887665443332 457889
Q ss_pred CcEEEEeecCCceeeecccccccCCCCccccccccccccccccccccccc-CcccCCCccEEEEecccCcccccChhHHh
Q 048810 481 LKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLR-EDQSFSNLRIIEVEHCNKLKHLFSFSMAK 559 (582)
Q Consensus 481 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 559 (582)
|+.+++.+|.... +..........|.|++|.++.|...++...-.+. ...++..|+.+.+.+||.+++-.- ..+.
T Consensus 348 Le~l~~e~~~~~~---d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~ 423 (483)
T KOG4341|consen 348 LERLDLEECGLIT---DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLS 423 (483)
T ss_pred hhhhcccccceeh---hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHh
Confidence 9999999885332 2222335678899999999988876655221121 134677899999999998766432 4557
Q ss_pred hhhhcceeeeccCcchHH
Q 048810 560 NLLWLQKVGVEECDELKM 577 (582)
Q Consensus 560 ~l~~L~~L~i~~C~~L~~ 577 (582)
.++.|+.+++-+|..+.+
T Consensus 424 ~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTK 441 (483)
T ss_pred hCcccceeeeechhhhhh
Confidence 788999999999987653
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=2.3e-07 Score=100.29 Aligned_cols=101 Identities=21% Similarity=0.402 Sum_probs=53.7
Q ss_pred ccEEEcCCCCCCC-CChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEEcccc
Q 048810 259 LKVLQFPGIGSSS-LPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSN 334 (582)
Q Consensus 259 Lr~L~l~~~~~~~-lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 334 (582)
++.|+|+++.+.. +|..++.+++|++|+|++|.+.+ |..++.+++|+.|++++|.+. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4555555555543 55555555666666666555554 445555556666666555555 4555555555666666555
Q ss_pred cccccccCcccccC-CCcccEEEcCCC
Q 048810 335 CWTLEVIAPNVISK-LSRLEELYMGNS 360 (582)
Q Consensus 335 ~~~l~~lp~~~l~~-l~~L~~L~l~~~ 360 (582)
|...+.+|.. ++. ..++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 4444445543 332 234444444444
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=3.7e-07 Score=98.61 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=92.1
Q ss_pred CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCC-CCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEE
Q 048810 232 RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLS 308 (582)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~ 308 (582)
.++.|++.++ .....+|..+ ..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..++++++|++|+
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCC-CccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 4778888887 4555677664 89999999999999997 589999999999999999999987 78899999999999
Q ss_pred eeCCCCC-ccchhhcCC-CCCCEEcccccccccccC
Q 048810 309 FRDSDIE-QLPLEIGQL-RRLQLLDLSNCWTLEVIA 342 (582)
Q Consensus 309 l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~lp 342 (582)
+++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999988 899888764 577888888866555443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=2.1e-07 Score=67.27 Aligned_cols=56 Identities=25% Similarity=0.377 Sum_probs=29.9
Q ss_pred CccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCC
Q 048810 258 GLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSD 313 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~ 313 (582)
+|++|++++|.++.+| ..+..+++|++|++++|.++. +..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555544 244555555555555555554 2445555555555555553
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.6e-09 Score=94.91 Aligned_cols=64 Identities=22% Similarity=0.179 Sum_probs=34.8
Q ss_pred CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEeccc
Q 048810 477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN 547 (582)
Q Consensus 477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~ 547 (582)
.+|+|..|++++|..++. +. ......|+.|++|.++.|-.+ +...+.+...+|+|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~--~~--~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKN--DC--FQEFFKFNYLQHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCc--hH--HHHHHhcchheeeehhhhcCC---ChHHeeeeccCcceEEEEecccc
Confidence 566666666666654433 11 113445666666666665432 22223346667777777777763
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=5.1e-08 Score=92.07 Aligned_cols=252 Identities=20% Similarity=0.130 Sum_probs=138.2
Q ss_pred cCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCC---CCC--c-------cccCCCCCccEEEeeCCCCC-
Q 048810 254 EGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCR---LKD--I-------AKVGQLKKLEVLSFRDSDIE- 315 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~---l~~--~-------~~~~~l~~L~~L~l~~~~l~- 315 (582)
..+..+..++|++|.+.. +.+.+.+.++|+..+++.-- ... | +.+-..++|++|+||.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 567888899999988753 44556667778877776532 221 2 22334557777777777444
Q ss_pred ----ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe
Q 048810 316 ----QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV 391 (582)
Q Consensus 316 ----~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 391 (582)
.+-.-+..+..|++|.|.+| .++......++ ..|++|. .....+.-++||.+....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~--~al~~l~-----------------~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLG--RALFELA-----------------VNKKAASKPKLRVFICGR 166 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHH--HHHHHHH-----------------HHhccCCCcceEEEEeec
Confidence 22223555666777777664 22221111111 1122222 122344556788888888
Q ss_pred cccccCCccc------ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCc
Q 048810 392 RYAEILPQDL------VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGV 465 (582)
Q Consensus 392 ~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~ 465 (582)
|.+.+-+... .++.|+.+++..+...+. ....+ ...+. .+++|+.|+|++|...
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-----------------G~~al--~eal~-~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-----------------GVTAL--AEALE-HCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCc-----------------hhHHH--HHHHH-hCCcceeeecccchhh
Confidence 8776655442 456677776655443000 00000 11112 2588999999988754
Q ss_pred ccccccc-cCCCCCCCCcEEEEeecCCceeeecccccc-cCCCCccccccccccccccccccccccc-CcccCCCccEEE
Q 048810 466 PSVVHEL-DDGEGFPRLKHLYVESCSEILHIVGSVRRV-GCEVFPLLETLYLIGLANLETICCSQLR-EDQSFSNLRIIE 542 (582)
Q Consensus 466 ~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~~L~~L~ 542 (582)
......+ ..+..+|+|++|.+.+|- ++.-....+.. ....+|+|++|.+.++ .++.-....+. .....|.|++|+
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhc
Confidence 3322111 014478899999999983 33211111111 2345899999998883 33321111110 134588999999
Q ss_pred Eeccc
Q 048810 543 VEHCN 547 (582)
Q Consensus 543 l~~c~ 547 (582)
+++|.
T Consensus 305 LngN~ 309 (382)
T KOG1909|consen 305 LNGNR 309 (382)
T ss_pred CCccc
Confidence 99983
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=4.4e-07 Score=65.58 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=52.0
Q ss_pred CCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCC
Q 048810 231 PRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRL 292 (582)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l 292 (582)
++|+.|++.+| ....++...|.++++|++|++++|.++.+| ..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888888887 667888888999999999999999998876 4789999999999999874
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.9e-08 Score=92.65 Aligned_cols=175 Identities=19% Similarity=0.170 Sum_probs=118.7
Q ss_pred cCcEEEEecCCCCcC--CCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC-CCC--CChhhhcccCc
Q 048810 209 KDPIAISLPYRGDQV--LPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG-SSS--LPSSLDRLINL 282 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~--lp~~i~~L~~L 282 (582)
.++++++++...++. +.... .|++|+.|.+.+. .....+...+ .+-.+|+.|+++.+. ++. +---+.+|+.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhH
Confidence 457888888776632 22222 6788888888876 3333444444 677899999999885 443 22346788899
Q ss_pred cEEEcCCCCCCCc--cc-c-CCCCCccEEEeeCCC----CCccchhhcCCCCCCEEcccccccccccCcccccCCCcccE
Q 048810 283 QTLCLDGCRLKDI--AK-V-GQLKKLEVLSFRDSD----IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE 354 (582)
Q Consensus 283 ~~L~L~~~~l~~~--~~-~-~~l~~L~~L~l~~~~----l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~ 354 (582)
..|++++|.+..+ .. + .--.+|..|+++|+. ...+..-..++++|.+||+++|..++.--...+.+++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 9999999976652 11 1 112578888999872 22444556788999999999987776522234778999999
Q ss_pred EEcCCCccccccccCCCccchhhccCCCCccEEEEEec
Q 048810 355 LYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVR 392 (582)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 392 (582)
|.++.|...-. ...-++...+.|.+|++.+.
T Consensus 343 lSlsRCY~i~p-------~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYDIIP-------ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcCCCh-------HHeeeeccCcceEEEEeccc
Confidence 99999874322 23456777888888888754
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=8.1e-09 Score=105.86 Aligned_cols=178 Identities=20% Similarity=0.130 Sum_probs=115.1
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCC-CCccEEEeeccC--------ccccccChHHhcCCCCccEEEcCCCCCCCCChh
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRC-PRLGLFLLHTIG--------LCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 275 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~-~~L~~L~l~~~~--------~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 275 (582)
+...+.+|+|-+.++.+........+ ..|+.|+..+.- ...+.+.+.. ....|.+-+.++|.+..+-.+
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHH
Confidence 44467889999998888654332221 245555554320 0011111111 124566777777777777777
Q ss_pred hhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEE
Q 048810 276 LDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL 355 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L 355 (582)
+.-++.|+.|+|+.|+++....+..+++|++|||+.|.++.+|.--..-..|+.|.+++ +.++.+-. +.+|++|+.|
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g--ie~LksL~~L 259 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG--IENLKSLYGL 259 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhhh--HHhhhhhhcc
Confidence 88888888888888888887788888888888888888887775311223488888887 56666653 6788888888
Q ss_pred EcCCCccccccccCCCccchhhccCCCCccEEEEEeccc
Q 048810 356 YMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA 394 (582)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 394 (582)
++++|.+... ..+..+..|..|+.|.+.+|.+
T Consensus 260 DlsyNll~~h-------seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLSEH-------SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhhcc-------hhhhHHHHHHHHHHHhhcCCcc
Confidence 8887754332 2344556667777788877754
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.20 E-value=7.5e-07 Score=95.98 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=94.8
Q ss_pred HhhccCcEEEEecCCCC--cCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhccc
Q 048810 205 ETIRKDPIAISLPYRGD--QVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLI 280 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~--~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~ 280 (582)
.....++++|++++... ..++.. .-+|.|++|.+.+....... -..++.++++|+.||+|+++++.+ ..+++|+
T Consensus 118 ~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 118 EESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 33456788888887554 333332 27899999999876222222 234567899999999999999988 6899999
Q ss_pred CccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchh-------hcCCCCCCEEcccc
Q 048810 281 NLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLE-------IGQLRRLQLLDLSN 334 (582)
Q Consensus 281 ~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~-------i~~l~~L~~L~l~~ 334 (582)
+|+.|.+++-.+.. ...+.+|++|++||+|...-..-+.- -..||+|+.||.++
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99999999988776 57899999999999998744433321 13477888888876
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=3.7e-07 Score=94.23 Aligned_cols=104 Identities=27% Similarity=0.363 Sum_probs=49.6
Q ss_pred cCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccc
Q 048810 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 333 (582)
..+++|..|++.+|.+.++...+..+++|++|++++|.|+....+..+..|+.|++++|.++.+.. +..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 344555555555555554443344555555555555555555555555555555555555544432 3334555555555
Q ss_pred ccccccccCc-ccccCCCcccEEEcCCC
Q 048810 334 NCWTLEVIAP-NVISKLSRLEELYMGNS 360 (582)
Q Consensus 334 ~~~~l~~lp~-~~l~~l~~L~~L~l~~~ 360 (582)
+ +.+..+.. . ...+.+|+.+.+.+|
T Consensus 171 ~-n~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 171 Y-NRIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred c-chhhhhhhhh-hhhccchHHHhccCC
Confidence 5 23333332 1 134444444444444
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.7e-06 Score=56.25 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=21.5
Q ss_pred CccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC
Q 048810 258 GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD 294 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~ 294 (582)
+|++|++++|.++.+|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4566666666666666556666666666666665554
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=1.7e-07 Score=88.52 Aligned_cols=17 Identities=6% Similarity=-0.214 Sum_probs=11.1
Q ss_pred HhhccCcEEEEecCCCC
Q 048810 205 ETIRKDPIAISLPYRGD 221 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~ 221 (582)
......+..+++++|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~ 42 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTF 42 (382)
T ss_pred hcccCceEEEeccCCch
Confidence 33455677777777766
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=3.3e-07 Score=94.53 Aligned_cols=183 Identities=21% Similarity=0.193 Sum_probs=116.1
Q ss_pred EEEecCCCCcCCCC-CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCC
Q 048810 213 AISLPYRGDQVLPQ-RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCR 291 (582)
Q Consensus 213 ~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~ 291 (582)
.+++..+.+..... ...+.++..|++..+ .+..+... +..+.+|++|++++|.|+++. .+..+..|+.|++.+|.
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n--~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDN--KIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeecccc--chhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence 33355555544222 235677777777765 33333331 356889999999999988875 47778889999999999
Q ss_pred CCCccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCC
Q 048810 292 LKDIAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGG 370 (582)
Q Consensus 292 l~~~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 370 (582)
++.+..+..+.+|+.+++++|.+..+... ...+.+|+.+.+.+ +.+..+.. +..+..+..+++..+.+..
T Consensus 152 i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~------ 222 (414)
T KOG0531|consen 152 ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISK------ 222 (414)
T ss_pred chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhccccccee------
Confidence 88888888899999999999988877664 57788888888888 44444332 3344444444555544322
Q ss_pred CccchhhccCCCC--ccEEEEEecccccCCccc-ccccccEEEEE
Q 048810 371 SNASLVELNGLSK--LTTLEIHVRYAEILPQDL-VSVELQRYKMF 412 (582)
Q Consensus 371 ~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 412 (582)
...+..+.. |+.+.+..|.+...+..+ .+..+..|++.
T Consensus 223 ----~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 223 ----LEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLS 263 (414)
T ss_pred ----ccCcccchhHHHHHHhcccCccccccccccccccccccchh
Confidence 122222222 677777777766653222 44455555443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=4.8e-07 Score=83.62 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=29.6
Q ss_pred CccEEEcCCCCCCCCC--hhhh-cccCccEEEcCCCCCCCc----cccCCCCCccEEEeeCCCCC
Q 048810 258 GLKVLQFPGIGSSSLP--SSLD-RLINLQTLCLDGCRLKDI----AKVGQLKKLEVLSFRDSDIE 315 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~lp--~~i~-~L~~L~~L~L~~~~l~~~----~~~~~l~~L~~L~l~~~~l~ 315 (582)
.+..|.+.++.|...- ..++ ..++++.|||.+|.++.. ..+.+|+.|++|+++.|.+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 3345555555553321 2222 345666677777666652 22345566666666655443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.9e-05 Score=52.17 Aligned_cols=32 Identities=41% Similarity=0.650 Sum_probs=16.2
Q ss_pred CccEEEeeCCCCCccchhhcCCCCCCEEcccc
Q 048810 303 KLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSN 334 (582)
Q Consensus 303 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 334 (582)
+|++|++++|+++.+|..+++|++|++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 45555555555555555555555555555555
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=4.7e-05 Score=75.84 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=6.5
Q ss_pred CcccEEEcCCCc
Q 048810 350 SRLEELYMGNSF 361 (582)
Q Consensus 350 ~~L~~L~l~~~~ 361 (582)
++|++|.+.+|.
T Consensus 156 sSLk~L~Is~c~ 167 (426)
T PRK15386 156 PSLKTLSLTGCS 167 (426)
T ss_pred CcccEEEecCCC
Confidence 355566655544
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.5e-05 Score=86.01 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCccEEEcCCCCC--CCCChhhh-cccCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEE
Q 048810 257 EGLKVLQFPGIGS--SSLPSSLD-RLINLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL 330 (582)
Q Consensus 257 ~~Lr~L~l~~~~~--~~lp~~i~-~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 330 (582)
.+|++|++++... ..=|..++ -|++|+.|.+.+-.+.. ..-..++++|..||+++++++.+ .++++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4566666655432 11122222 35566666666655433 23344566666666666666655 556666666666
Q ss_pred cccccccccccC-cccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810 331 DLSNCWTLEVIA-PNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE 395 (582)
Q Consensus 331 ~l~~~~~l~~lp-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 395 (582)
.+.+-. +..-. -..+.+|++|+.|+++........ .......+.-..|++||.|+++++.+.
T Consensus 201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCC-CCchhhHHHHhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecCCcchh
Confidence 665522 21111 001456666666666654322210 000011222234667777777765543
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=9.1e-06 Score=75.39 Aligned_cols=82 Identities=26% Similarity=0.327 Sum_probs=61.2
Q ss_pred cCCCCccEEEcCCCCCCC---CChhhhcccCccEEEcCCCCCCC-cccc-CCCCCccEEEeeCCCCC--ccchhhcCCCC
Q 048810 254 EGMEGLKVLQFPGIGSSS---LPSSLDRLINLQTLCLDGCRLKD-IAKV-GQLKKLEVLSFRDSDIE--QLPLEIGQLRR 326 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~---lp~~i~~L~~L~~L~L~~~~l~~-~~~~-~~l~~L~~L~l~~~~l~--~lp~~i~~l~~ 326 (582)
+....++.|||.+|.+++ +...+.+|++|++|+++.|++.. +... --+.+|++|-+.++.+. ........++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 567788888998888765 44556788889999999888877 5555 36678888888888554 55666677777
Q ss_pred CCEEccccc
Q 048810 327 LQLLDLSNC 335 (582)
Q Consensus 327 L~~L~l~~~ 335 (582)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777777763
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=3.9e-06 Score=68.77 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=70.8
Q ss_pred cEEEEecCCCCcCCCCC----CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEE
Q 048810 211 PIAISLPYRGDQVLPQR----MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLC 286 (582)
Q Consensus 211 ~~~l~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~ 286 (582)
...++++.|.+..++.. ....+|....+++| ....+|+.+-.+++.++.|++++|.+.++|..+..++.||.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N--~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN--GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc--hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 34455555555433332 13445555666655 4445666665666677777777777777777777777777777
Q ss_pred cCCCCCCC-ccccCCCCCccEEEeeCCCCCccchh
Q 048810 287 LDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE 320 (582)
Q Consensus 287 L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~ 320 (582)
++.|++.. |..+-.|.+|-+|+..++.+..+|-.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 77777766 66666677777777777777777665
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.00019 Score=71.69 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=52.5
Q ss_pred hccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCC-CCCCCChhhhcccCccEE
Q 048810 207 IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGI-GSSSLPSSLDRLINLQTL 285 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~L~~L~~L 285 (582)
....+++|++++|.+..+|. --++|+.|.+.++ .....+|+.+ ..+|++|++++| .+..+|.+ |+.|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc-~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--LPNELTEITIENC-NNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCC-CCcccCCchh---hhhhhheEccCcccccccccc------cceE
Confidence 34678899999999888883 2346999999886 4455566544 368999999988 67777754 5666
Q ss_pred EcCCCC
Q 048810 286 CLDGCR 291 (582)
Q Consensus 286 ~L~~~~ 291 (582)
++.++.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 666554
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=1.4e-06 Score=90.00 Aligned_cols=79 Identities=27% Similarity=0.330 Sum_probs=37.7
Q ss_pred cCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCC-CCCccEEEeeCCCCCccchhhcCCCCCCEEcc
Q 048810 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQ-LKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 332 (582)
.-++.|+.|+|++|++++.- .+..|.+|++|||++|.+...+.++. -.+|+.|.+++|.++++- +|.+|.+|+.||+
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDl 261 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDL 261 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccch
Confidence 33445555555555554433 44555555555555555544211111 122555555555555443 2555555555555
Q ss_pred cc
Q 048810 333 SN 334 (582)
Q Consensus 333 ~~ 334 (582)
++
T Consensus 262 sy 263 (1096)
T KOG1859|consen 262 SY 263 (1096)
T ss_pred hH
Confidence 54
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00018 Score=63.27 Aligned_cols=123 Identities=20% Similarity=0.332 Sum_probs=72.7
Q ss_pred ccEEEcCCCCCCCCChhhh-cccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCC-CCCCEEcccccc
Q 048810 259 LKVLQFPGIGSSSLPSSLD-RLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQL-RRLQLLDLSNCW 336 (582)
Q Consensus 259 Lr~L~l~~~~~~~lp~~i~-~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l-~~L~~L~l~~~~ 336 (582)
=+.+++.+..+...-. ++ -+.+...+||+.|.+.....+..+..|.+|.+.+|+|+.+-+.+..+ ++|+.|.+.+|
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN- 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN- 98 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-
Confidence 3455665555433221 22 13356777888888777777788888888888888888776666554 66888887773
Q ss_pred cccc---cCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEE
Q 048810 337 TLEV---IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390 (582)
Q Consensus 337 ~l~~---lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 390 (582)
.+.+ +.+ +..+++|++|.+-+|..... ..-..--+..+++|+.|+.+
T Consensus 99 si~~l~dl~p--La~~p~L~~Ltll~Npv~~k-----~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 99 SIQELGDLDP--LASCPKLEYLTLLGNPVEHK-----KNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred chhhhhhcch--hccCCccceeeecCCchhcc-----cCceeEEEEecCcceEeehh
Confidence 3333 333 45666777777666543211 11112234455666666655
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=1.1e-05 Score=66.23 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=58.8
Q ss_pred CCccEEEcCCCCCCCCCh---hhhcccCccEEEcCCCCCCC-ccccC-CCCCccEEEeeCCCCCccchhhcCCCCCCEEc
Q 048810 257 EGLKVLQFPGIGSSSLPS---SLDRLINLQTLCLDGCRLKD-IAKVG-QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLD 331 (582)
Q Consensus 257 ~~Lr~L~l~~~~~~~lp~---~i~~L~~L~~L~L~~~~l~~-~~~~~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 331 (582)
+.+-.++|++|.+..+++ .+....+|...+|++|.++. |+.+. +.+..++|++++|.++.+|.++..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 345566777776654443 44455566666777777666 44433 34466666666666666666666666666666
Q ss_pred ccccccccccCcccccCCCcccEEEcCCC
Q 048810 332 LSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 332 l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
++. +.+...|.- +..|.+|-.|+..++
T Consensus 107 l~~-N~l~~~p~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRF-NPLNAEPRV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred ccc-CccccchHH-HHHHHhHHHhcCCCC
Confidence 666 344444443 334555544444433
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00026 Score=62.31 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=44.1
Q ss_pred cCCCCccEEEcCCCCCCCCChhhhc-ccCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchh----hcCCC
Q 048810 254 EGMEGLKVLQFPGIGSSSLPSSLDR-LINLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLE----IGQLR 325 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~i~~-L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~ 325 (582)
..++.|..|.+++|.|+.+-..+.. +++|..|.|.+|.+.. ...+..+++|++|.+-+|.++..+.. +.+++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 4555555566666655554433333 3345666666655544 34444555666666666655543332 45666
Q ss_pred CCCEEcccc
Q 048810 326 RLQLLDLSN 334 (582)
Q Consensus 326 ~L~~L~l~~ 334 (582)
+|++||..+
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 677766654
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=8.7e-05 Score=68.14 Aligned_cols=251 Identities=19% Similarity=0.111 Sum_probs=119.3
Q ss_pred cCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCC---CCC--c-------cccCCCCCccEEEeeCCCCC-
Q 048810 254 EGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCR---LKD--I-------AKVGQLKKLEVLSFRDSDIE- 315 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~---l~~--~-------~~~~~l~~L~~L~l~~~~l~- 315 (582)
..+..+..++||+|.|.. +...|.+-.+|+..+++.-- ... + +.+-++++|+..++|.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 347777888888887754 44445555667777665432 111 1 33455667777777766444
Q ss_pred ccc----hhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe
Q 048810 316 QLP----LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV 391 (582)
Q Consensus 316 ~lp----~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 391 (582)
+.| ..|.+-+.|.||.+++ +.++.+..+-++ +.|++|- ......+.+.|+...+..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rig--kal~~la-----------------~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIG--KALFHLA-----------------YNKKAADKPKLEVVICGR 166 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeec-CCCCccchhHHH--HHHHHHH-----------------HHhhhccCCCceEEEecc
Confidence 222 2345556666666666 334433222111 1111111 122334556677777777
Q ss_pred cccccCCccc------ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCc
Q 048810 392 RYAEILPQDL------VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGV 465 (582)
Q Consensus 392 ~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~ 465 (582)
|++.+.+... ...+|+.+++..+...+.. ...+- ...... .++|+.|+|.+|...
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg------v~~L~------------~~gl~y-~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEG------VTMLA------------FLGLFY-SHSLEVLDLQDNTFT 227 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcch------hHHHH------------HHHHHH-hCcceeeeccccchh
Confidence 7666555442 3346666666555431110 00000 001111 366777777766532
Q ss_pred cccccccc-CCCCCCCCcEEEEeecCCceeeecccc---cccCCCCcccccccccccc----cccccccccccCcccCCC
Q 048810 466 PSVVHELD-DGEGFPRLKHLYVESCSEILHIVGSVR---RVGCEVFPLLETLYLIGLA----NLETICCSQLREDQSFSN 537 (582)
Q Consensus 466 ~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~----~L~~~~~~~~~~~~~~~~ 537 (582)
..-...+. .+..++.|++|.+.+|- +..- +... .+...-+|+|..|....-. -+..+.-..+ +.+++|-
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDCl-ls~~-G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~-e~~~~p~ 304 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCL-LSNE-GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF-EQDAVPL 304 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchh-hccc-cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh-hhcccHH
Confidence 22111110 02355667777777772 1111 1100 1133455666666654311 0111111111 2566777
Q ss_pred ccEEEEecc
Q 048810 538 LRIIEVEHC 546 (582)
Q Consensus 538 L~~L~l~~c 546 (582)
|..|.+.++
T Consensus 305 L~~le~ngN 313 (388)
T COG5238 305 LVDLERNGN 313 (388)
T ss_pred HHHHHHccC
Confidence 777777765
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.19 E-value=0.00026 Score=65.11 Aligned_cols=116 Identities=14% Similarity=0.013 Sum_probs=59.6
Q ss_pred hcccceeeccccCcccc--cccccCCCCCCCCcEEEEeecCCceeeecccc-cccCCCCcccccccccccccccccccc-
Q 048810 452 QRTEDLWLETLEGVPSV--VHELDDGEGFPRLKHLYVESCSEILHIVGSVR-RVGCEVFPLLETLYLIGLANLETICCS- 527 (582)
Q Consensus 452 ~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~L~~~~~~- 527 (582)
.+|+.+.+..|..-..- .-.+..+..+.+|+.|+|.++..-.. ++.. .......+.|+.|.+.+|---..-...
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~--gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE--GSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh--hHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 57778887766532221 01111133578999999999742211 1100 112345567999999887521110000
Q ss_pred --cccCcccCCCccEEEEecccCcc----c--ccChhHHhhhhhcceeeecc
Q 048810 528 --QLREDQSFSNLRIIEVEHCNKLK----H--LFSFSMAKNLLWLQKVGVEE 571 (582)
Q Consensus 528 --~~~~~~~~~~L~~L~l~~c~~L~----~--l~~~~~~~~l~~L~~L~i~~ 571 (582)
.+. ...+|+|..|...+...-. . ++.. .-..+|-|..|.+.+
T Consensus 263 ~~~f~-e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~-e~~~~p~L~~le~ng 312 (388)
T COG5238 263 LRRFN-EKFVPNLMPLPGDYNERRGGIILDISLNEF-EQDAVPLLVDLERNG 312 (388)
T ss_pred HHHhh-hhcCCCccccccchhhhcCceeeeechhhh-hhcccHHHHHHHHcc
Confidence 011 3456888888777764311 1 2211 112466666666654
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=4.8e-05 Score=70.04 Aligned_cols=100 Identities=24% Similarity=0.282 Sum_probs=52.4
Q ss_pred CCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccch--hhcCCCCCCEEccc
Q 048810 256 MEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLS 333 (582)
Q Consensus 256 l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~ 333 (582)
+.+.+.|+.-++.++++. ....++.|++|.|+-|+++....+..+++|+.|+|+.|.|..+-+ .+.++++|++|.+.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 344555555555555432 233455666666666666665556666666666666665554432 34555666666555
Q ss_pred ccccccccCcc----cccCCCcccEEE
Q 048810 334 NCWTLEVIAPN----VISKLSRLEELY 356 (582)
Q Consensus 334 ~~~~l~~lp~~----~l~~l~~L~~L~ 356 (582)
.|...+.-+.. .+..|++|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 54444433322 233455555554
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.92 E-value=0.00019 Score=76.13 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=16.8
Q ss_pred CCCCCEEcccccccccccCccccc-CCCcccEEEcCCCc
Q 048810 324 LRRLQLLDLSNCWTLEVIAPNVIS-KLSRLEELYMGNSF 361 (582)
Q Consensus 324 l~~L~~L~l~~~~~l~~lp~~~l~-~l~~L~~L~l~~~~ 361 (582)
+++|+.|+++.|..+++.--..+. .+++|++|.+.+|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 355555555554433332211122 24555555554443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=7.9e-05 Score=68.67 Aligned_cols=98 Identities=21% Similarity=0.180 Sum_probs=70.3
Q ss_pred CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC---ccccCCCCCccE
Q 048810 230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD---IAKVGQLKKLEV 306 (582)
Q Consensus 230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~ 306 (582)
+.+.+.|++.+++ ...+ .+..+|+.|++|.||-|.|+.+. .+..|++|+.|.|+.|.|.+ +..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~--L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCC--ccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 4566777777762 2222 34578899999999999888875 47888899999999888877 466788888888
Q ss_pred EEeeCCCCC-ccch-----hhcCCCCCCEEcc
Q 048810 307 LSFRDSDIE-QLPL-----EIGQLRRLQLLDL 332 (582)
Q Consensus 307 L~l~~~~l~-~lp~-----~i~~l~~L~~L~l 332 (582)
|.|..|... +-+. -+.-|+||+.||=
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 888876333 2221 2456788888863
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.0005 Score=63.25 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=23.4
Q ss_pred CccEEEcCCCCCCCccccCCCCCccEEEeeCC--CCC-ccchhhcCCCCCCEEcccc
Q 048810 281 NLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDS--DIE-QLPLEIGQLRRLQLLDLSN 334 (582)
Q Consensus 281 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~ 334 (582)
.|+.|++.++.++....+..|++|++|.++.| ++. .++..+.++++|++|++++
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence 34444444444444444444444444544444 222 3333333344455554444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.0004 Score=63.90 Aligned_cols=101 Identities=25% Similarity=0.321 Sum_probs=56.6
Q ss_pred CCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCC--CCCC--ccccCCCCCccEEEeeCCCCC---ccchhhcCCCCC
Q 048810 255 GMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGC--RLKD--IAKVGQLKKLEVLSFRDSDIE---QLPLEIGQLRRL 327 (582)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~--~l~~--~~~~~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L 327 (582)
.+..|..|++.+..++.+. .+..|++|++|.++.| .+.. .....++++|++|++++|++. .+++ +..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence 3445555555555544322 2335667788888777 3333 344455578888888887665 3332 5666777
Q ss_pred CEEccccccccc--ccCcccccCCCcccEEEc
Q 048810 328 QLLDLSNCWTLE--VIAPNVISKLSRLEELYM 357 (582)
Q Consensus 328 ~~L~l~~~~~l~--~lp~~~l~~l~~L~~L~l 357 (582)
..|++.+|.... .--...+.-+++|..|+-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 777777764322 111123445566666653
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.0016 Score=68.90 Aligned_cols=88 Identities=23% Similarity=0.232 Sum_probs=39.0
Q ss_pred CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChh
Q 048810 477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFS 556 (582)
Q Consensus 477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 556 (582)
.+++|+.|++..|..+.... .......+|+|+.|.+.+|..+++-.-..+ ...+++|++|++++|..++.-.-..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~---l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i--~~~~~~L~~L~l~~c~~~~d~~l~~ 315 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIG---LSALASRCPNLETLSLSNCSNLTDEGLVSI--AERCPSLRELDLSGCHGLTDSGLEA 315 (482)
T ss_pred hcCCcCccchhhhhccCchh---HHHHHhhCCCcceEccCCCCccchhHHHHH--HHhcCcccEEeeecCccchHHHHHH
Confidence 44566666666554322211 001122255666666555555433221111 2345566666666665553321112
Q ss_pred HHhhhhhcceeee
Q 048810 557 MAKNLLWLQKVGV 569 (582)
Q Consensus 557 ~~~~l~~L~~L~i 569 (582)
...++++|+.|.+
T Consensus 316 ~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 316 LLKNCPNLRELKL 328 (482)
T ss_pred HHHhCcchhhhhh
Confidence 2344554444433
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0018 Score=57.22 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=42.0
Q ss_pred CCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcch
Q 048810 504 CEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDEL 575 (582)
Q Consensus 504 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L 575 (582)
...++.++.|.+.+|..+.+++-+.+. +-+|+|+.|+|++||++++-.- ..+..+++|+.|.|.+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhh
Confidence 344566666666666666666544343 3567777777777777666432 34556667777776665543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.64 E-value=0.004 Score=34.10 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=14.2
Q ss_pred CccEEEcCCCCCCCCChhhhc
Q 048810 258 GLKVLQFPGIGSSSLPSSLDR 278 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~i~~ 278 (582)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.58 E-value=0.0047 Score=33.81 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=10.8
Q ss_pred CccEEEeeCCCCCccchhhc
Q 048810 303 KLEVLSFRDSDIEQLPLEIG 322 (582)
Q Consensus 303 ~L~~L~l~~~~l~~lp~~i~ 322 (582)
+|++|++++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35555555555555555443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.25 E-value=0.06 Score=45.23 Aligned_cols=78 Identities=15% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCcc
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLE 305 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~ 305 (582)
++++|+.+.+.. ....+....|..+..|+.+.+.++ +..++ ..+..+.+|+.+.+.. .+.. ...+..+.+|+
T Consensus 10 ~~~~l~~i~~~~---~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN---TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS---T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC---CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 344445444432 233444444555555555555543 33333 2334444455555533 2222 22333444555
Q ss_pred EEEeeC
Q 048810 306 VLSFRD 311 (582)
Q Consensus 306 ~L~l~~ 311 (582)
.+.+..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 555433
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.12 E-value=0.073 Score=44.73 Aligned_cols=106 Identities=15% Similarity=0.327 Sum_probs=60.1
Q ss_pred cChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcC
Q 048810 248 VSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQ 323 (582)
Q Consensus 248 ~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~ 323 (582)
++...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +.. -..+..+.+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4566788888999999875 455554 35777778888888774 555 35577777888888865 55555554 445
Q ss_pred CCCCCEEcccccccccccCcccccCCCcccEEEcCC
Q 048810 324 LRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359 (582)
Q Consensus 324 l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 359 (582)
+++|+.+.+.. .+..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 78888888765 2566666666666 777777654
No 75
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.37 E-value=0.38 Score=55.46 Aligned_cols=145 Identities=15% Similarity=0.218 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhccccccccchhhhHH
Q 048810 11 VLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDGMEKNVY 90 (582)
Q Consensus 11 ~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~~i~ 90 (582)
+++.+|+.++|........ + .+...+|.+.|+|.|+++..++..+...... -......+... ....+.
T Consensus 185 ~f~~~e~~~ll~~~~~~~~-~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~ 252 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPI-E---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGI-------NASHLS 252 (903)
T ss_pred CCCHHHHHHHHHhccCCCC-C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCC-------CchhHH
Confidence 8999999999987664322 2 3457889999999999999998877643210 01111111100 113355
Q ss_pred HHHHH-HHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHHHhcccccc-C-CC
Q 048810 91 LSIKL-SYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLD-G-DA 167 (582)
Q Consensus 91 ~~l~~-sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~-~-~~ 167 (582)
..+.- -|+.||.+ .+..+...|+++ .++.+ +...- ... .++ .+.+++|...+++.. . +.
T Consensus 253 ~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~l-----~~~----~~~----~~~L~~l~~~~l~~~~~~~~ 314 (903)
T PRK04841 253 DYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVRV-----TGE----ENG----QMRLEELERQGLFIQRMDDS 314 (903)
T ss_pred HHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHHH-----cCC----CcH----HHHHHHHHHCCCeeEeecCC
Confidence 54433 48899998 999999999986 44422 22211 110 112 346778888888653 2 23
Q ss_pred CccEEhhhHHHHHHHHHh
Q 048810 168 EDEVKMHDVIRVVAVSIA 185 (582)
Q Consensus 168 ~~~~~mhdl~~~l~~~~~ 185 (582)
...++.|++++++.....
T Consensus 315 ~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 315 GEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCEEehhHHHHHHHHHHH
Confidence 457899999999887654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.22 E-value=0.031 Score=28.29 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=6.6
Q ss_pred CccEEEeeCCCCCccc
Q 048810 303 KLEVLSFRDSDIEQLP 318 (582)
Q Consensus 303 ~L~~L~l~~~~l~~lp 318 (582)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=0.0069 Score=53.68 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=38.4
Q ss_pred CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCccc
Q 048810 477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKH 551 (582)
Q Consensus 477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 551 (582)
.+++++.|.+.+|..+..+- ...-.+.+|+|+.|+|++|+++++-. +.-+..+++|+.|.+.+.+.+..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~---L~~l~~~~~~L~~L~lsgC~rIT~~G---L~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWC---LERLGGLAPSLQDLDLSGCPRITDGG---LACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ccchhhhheeccccchhhHH---HHHhcccccchheeeccCCCeechhH---HHHHHHhhhhHHHHhcCchhhhc
Confidence 56666666666665433221 11123366777777777777655432 22245667777777776655443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.53 E-value=0.045 Score=27.71 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=7.1
Q ss_pred CccEEEcCCCCCCCCC
Q 048810 258 GLKVLQFPGIGSSSLP 273 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~lp 273 (582)
+|+.|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655544
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.67 E-value=0.0044 Score=55.97 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=49.1
Q ss_pred cCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcc
Q 048810 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDL 332 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 332 (582)
...+..++||++.+.+..+-..++-++.|..|+++.+++.. |.+++.+..++++++..|..+..|.+.++.+++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34555666666666655555555555666666666666555 56666666666666666666666666666666666665
Q ss_pred cc
Q 048810 333 SN 334 (582)
Q Consensus 333 ~~ 334 (582)
.+
T Consensus 119 k~ 120 (326)
T KOG0473|consen 119 KK 120 (326)
T ss_pred cc
Confidence 55
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.54 E-value=0.23 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=13.0
Q ss_pred CCCccEEEeeCCCCCccchhh
Q 048810 301 LKKLEVLSFRDSDIEQLPLEI 321 (582)
Q Consensus 301 l~~L~~L~l~~~~l~~lp~~i 321 (582)
+++|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 345666666666666666543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.54 E-value=0.23 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=13.0
Q ss_pred CCCccEEEeeCCCCCccchhh
Q 048810 301 LKKLEVLSFRDSDIEQLPLEI 321 (582)
Q Consensus 301 l~~L~~L~l~~~~l~~lp~~i 321 (582)
+++|++|++++|.++.+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 345666666666666666543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.84 E-value=0.0089 Score=54.06 Aligned_cols=91 Identities=16% Similarity=0.112 Sum_probs=76.8
Q ss_pred CCCC-hhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCccccc
Q 048810 270 SSLP-SSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVIS 347 (582)
Q Consensus 270 ~~lp-~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~ 347 (582)
..+| ..|........||++.+++.. -..++.++.|..|+++.+.+..+|.+.+.+..++++++.. +.....|.. ++
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-cc
Confidence 3444 356677789999999998877 5778889999999999999999999999999999999888 678888876 78
Q ss_pred CCCcccEEEcCCCcc
Q 048810 348 KLSRLEELYMGNSFK 362 (582)
Q Consensus 348 ~l~~L~~L~l~~~~~ 362 (582)
++++++.++..++.+
T Consensus 109 k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEF 123 (326)
T ss_pred ccCCcchhhhccCcc
Confidence 999999998877653
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.85 E-value=0.5 Score=26.85 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=13.9
Q ss_pred CCCccEEEcCCCCCCCCChh
Q 048810 256 MEGLKVLQFPGIGSSSLPSS 275 (582)
Q Consensus 256 l~~Lr~L~l~~~~~~~lp~~ 275 (582)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.85 E-value=0.5 Score=26.85 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=13.9
Q ss_pred CCCccEEEcCCCCCCCCChh
Q 048810 256 MEGLKVLQFPGIGSSSLPSS 275 (582)
Q Consensus 256 l~~Lr~L~l~~~~~~~lp~~ 275 (582)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 85
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=84.87 E-value=4.7 Score=38.76 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=51.8
Q ss_pred cceEEccCCCHHHHHHHHHHhhC--CCCCCcch-HHHHHHHHHHhCCcchHHHHHHHHHc------c-C--ChHHHHHHH
Q 048810 4 QKEIQIDVLSKEEALQLFKKIVG--DSMKTSAF-QSIAVEIVGRCGGLPVALITLAKALK------N-E--SLDTWKDVL 71 (582)
Q Consensus 4 ~~~~~l~~L~~~~~~~Lf~~~a~--~~~~~~~l-~~~~~~i~~~c~GlPLai~~~g~~L~------~-~--~~~~W~~~l 71 (582)
...+++++++.+|..+++...+. +......+ .+..+.|++.++|.|..|..++..+- + + +.+.++.++
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVI 263 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 34678999999999999987764 22212222 47899999999999999999988762 1 1 666666666
Q ss_pred HHH
Q 048810 72 RQL 74 (582)
Q Consensus 72 ~~l 74 (582)
..+
T Consensus 264 ~~~ 266 (269)
T TIGR03015 264 AEI 266 (269)
T ss_pred HHh
Confidence 554
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.39 E-value=0.41 Score=27.28 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=9.3
Q ss_pred hhcceeeeccCcchHH
Q 048810 562 LWLQKVGVEECDELKM 577 (582)
Q Consensus 562 ~~L~~L~i~~C~~L~~ 577 (582)
++|++|+|.+|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4566666666665553
No 87
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=74.67 E-value=78 Score=31.46 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=74.7
Q ss_pred ceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhccccccccc
Q 048810 5 KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDG 84 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~ 84 (582)
..+++++++.++..+++.+.+......-+ .+....|++.|+|.|-.+..+...+ ..|..+.. .... ...
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~-~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~---~~~I--~~~ 241 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEID-EEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG---DGVI--TKE 241 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC---CCCC--CHH
Confidence 46889999999999999998862221111 3578999999999995444444322 12211110 0000 011
Q ss_pred hhhhHHHHHHHHHhhcCchhHHHHHH-HhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHH-HHHhcccc
Q 048810 85 MEKNVYLSIKLSYDFLRSEEAKSLFL-LCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIG-KLKSLCLL 162 (582)
Q Consensus 85 ~~~~i~~~l~~sy~~L~~~~lk~cfl-y~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~-~L~~~~l~ 162 (582)
.-......+...|..|+.. .+.-+. ....|+.+ .+..+.+-... | ...+++++ .++ .|++.+|+
T Consensus 242 ~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-----~~~~~~~~----~~e~~Li~~~li 307 (328)
T PRK00080 242 IADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G-----EERDTIED----VYEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C-----CCcchHHH----HhhHHHHHcCCc
Confidence 1233344455666777766 455553 55556544 46655553332 1 11122333 344 57788888
Q ss_pred ccC
Q 048810 163 LDG 165 (582)
Q Consensus 163 ~~~ 165 (582)
+..
T Consensus 308 ~~~ 310 (328)
T PRK00080 308 QRT 310 (328)
T ss_pred ccC
Confidence 644
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.98 E-value=2.2 Score=24.31 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=12.2
Q ss_pred CccEEEeeCCCCCccch
Q 048810 303 KLEVLSFRDSDIEQLPL 319 (582)
Q Consensus 303 ~L~~L~l~~~~l~~lp~ 319 (582)
+|+.|++++|+++++|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777775
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.43 E-value=4.9 Score=22.91 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=9.3
Q ss_pred CCccEEEeeCCCCCcc
Q 048810 302 KKLEVLSFRDSDIEQL 317 (582)
Q Consensus 302 ~~L~~L~l~~~~l~~l 317 (582)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666655443
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.66 E-value=6.9 Score=21.50 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=5.5
Q ss_pred cCccEEEcCCCCC
Q 048810 280 INLQTLCLDGCRL 292 (582)
Q Consensus 280 ~~L~~L~L~~~~l 292 (582)
++|++|++++|++
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555544
No 91
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=52.43 E-value=2.3e+02 Score=27.56 Aligned_cols=137 Identities=14% Similarity=0.093 Sum_probs=72.9
Q ss_pred ceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhccccccccc
Q 048810 5 KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEIDG 84 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~ 84 (582)
..+++++++.+|..+++.+.+......-+ .+....|++.|+|.|-.+..++..+ |..+. ....... ...
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~~~-~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~~~i--t~~ 220 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVEIE-PEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQKII--NRD 220 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCCCCc--CHH
Confidence 46789999999999999988862211111 3577889999999996655544422 21110 0000000 001
Q ss_pred hhhhHHHHHHHHHhhcCchhHHHHHH-HhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHH-HHHhcccc
Q 048810 85 MEKNVYLSIKLSYDFLRSEEAKSLFL-LCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIG-KLKSLCLL 162 (582)
Q Consensus 85 ~~~~i~~~l~~sy~~L~~~~lk~cfl-y~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~-~L~~~~l~ 162 (582)
....+...+..+|..++.+ -+.-+. ..+.+. +-.+..+++-... |- +..+++ ..++ .|++++++
T Consensus 221 ~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~-~~~~~~~~ia~~l---g~-----~~~~~~----~~~e~~Li~~~li 286 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEI-DRKLLSVLIEQFQ-GGPVGLKTLAAAL---GE-----DADTIE----DVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhC-CCcccHHHHHHHh---CC-----CcchHH----HhhhHHHHHcCCc
Confidence 1122233345567777766 344443 445554 3345544443332 11 112233 3456 58888998
Q ss_pred ccCC
Q 048810 163 LDGD 166 (582)
Q Consensus 163 ~~~~ 166 (582)
+..+
T Consensus 287 ~~~~ 290 (305)
T TIGR00635 287 QRTP 290 (305)
T ss_pred ccCC
Confidence 6443
No 92
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.03 E-value=0.67 Score=48.44 Aligned_cols=132 Identities=21% Similarity=0.187 Sum_probs=60.7
Q ss_pred CccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC------ccccC----CCCCccEEEeeCCCCC-----cc
Q 048810 258 GLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD------IAKVG----QLKKLEVLSFRDSDIE-----QL 317 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~------~~~~~----~l~~L~~L~l~~~~l~-----~l 317 (582)
.+++|++..|.++. +...+....+++.++++.|.+.. +..+. ...++++|.+.+|.++ .+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 34444444444432 33334444455555555554321 12222 3455666666665544 11
Q ss_pred chhhcCCCC-CCEEccccccccccc-----CcccccCC-CcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEE
Q 048810 318 PLEIGQLRR-LQLLDLSNCWTLEVI-----APNVISKL-SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIH 390 (582)
Q Consensus 318 p~~i~~l~~-L~~L~l~~~~~l~~l-----p~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 390 (582)
-..+...++ +..|++.. +.+.+. .+. +..+ ..++++++..|.+... ........+..++.++.+.++
T Consensus 225 ~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~----~~~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLAS-NKLGDVGVEKLLPC-LSVLSETLRVLDLSRNSITEK----GVRDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred HHHHhccchhhHHHHHHh-cCcchHHHHHHHHH-hcccchhhhhhhhhcCCcccc----chHHHHHHHhhhHHHHHhhcc
Confidence 122333343 44555555 223221 121 3344 4566666666654332 122234445556667777776
Q ss_pred ecccc
Q 048810 391 VRYAE 395 (582)
Q Consensus 391 ~~~~~ 395 (582)
.|.+.
T Consensus 299 ~n~l~ 303 (478)
T KOG4308|consen 299 NNPLT 303 (478)
T ss_pred cCccc
Confidence 66554
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.34 E-value=15 Score=21.26 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=8.3
Q ss_pred CCccEEEcCCCCCC
Q 048810 257 EGLKVLQFPGIGSS 270 (582)
Q Consensus 257 ~~Lr~L~l~~~~~~ 270 (582)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666553
No 94
>COG3899 Predicted ATPase [General function prediction only]
Probab=46.99 E-value=3e+02 Score=31.56 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=81.1
Q ss_pred ceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC-------ChHHHHHHHHHHhcc
Q 048810 5 KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE-------SLDTWKDVLRQLRSS 77 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-------~~~~W~~~l~~l~~~ 77 (582)
.++.+.||+..|.-.+......... ....+..+.|++|-+|.|+-+.=+-..+... +...|+.=..++...
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~~--~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~ 289 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCTK--LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL 289 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCcc--cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc
Confidence 5899999999999999887775321 2224578999999999999888777777731 444554333332222
Q ss_pred ccccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHh
Q 048810 78 YAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYG 130 (582)
Q Consensus 78 ~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~W 130 (582)
. ..+++...+..=.+.||.. -|...-..|++- -.|+.+.|--.|
T Consensus 290 ~------~~~~vv~~l~~rl~kL~~~-t~~Vl~~AA~iG--~~F~l~~La~l~ 333 (849)
T COG3899 290 A------TTDAVVEFLAARLQKLPGT-TREVLKAAACIG--NRFDLDTLAALA 333 (849)
T ss_pred h------hhHHHHHHHHHHHhcCCHH-HHHHHHHHHHhC--ccCCHHHHHHHH
Confidence 1 1233666788888999988 799999988884 667766665554
No 95
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=38.50 E-value=1.5e+02 Score=23.40 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=45.1
Q ss_pred HHHHHHH--HhhC--CCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC--ChHHHHHHHHHHh
Q 048810 16 EALQLFK--KIVG--DSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE--SLDTWKDVLRQLR 75 (582)
Q Consensus 16 ~~~~Lf~--~~a~--~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~--~~~~W~~~l~~l~ 75 (582)
|.|++=+ ...| +-.++|.....|-+..++..-.|+|+.++-+.=.+. +...|.-+++.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeik 87 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIK 87 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHh
Confidence 6777743 2233 667899999999999999999999999998765322 4567888887654
No 96
>PRK06893 DNA replication initiation factor; Validated
Probab=38.42 E-value=77 Score=29.58 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=37.5
Q ss_pred CcceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHH
Q 048810 3 SQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALIT 54 (582)
Q Consensus 3 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 54 (582)
...+++++++++++.+++++++++.....-+ .++..-|++++.|-.-++..
T Consensus 152 ~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~-~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 152 WGEIYQLNDLTDEQKIIVLQRNAYQRGIELS-DEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred cCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhccCCHHHHHH
Confidence 3458899999999999999999973322222 45788888888876654443
No 97
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=37.43 E-value=1.3e+02 Score=24.01 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHHHHHH--HhhC--CCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC-C-hHHHHHHHHHHh
Q 048810 15 EEALQLFK--KIVG--DSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE-S-LDTWKDVLRQLR 75 (582)
Q Consensus 15 ~~~~~Lf~--~~a~--~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-~-~~~W~~~l~~l~ 75 (582)
.|.|++=+ ...| +-.+.|.+.+.|-+..++..-.|+|+.++-+.=.+. + .+.|.-+++.+.
T Consensus 24 iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElk 90 (108)
T PF02284_consen 24 IDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELK 90 (108)
T ss_dssp --HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHh
Confidence 45666533 2234 667889999999999999999999999987764433 3 337888877643
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.29 E-value=14 Score=38.56 Aligned_cols=69 Identities=22% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccc--cCCCCcccccccccc
Q 048810 448 RMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV--GCEVFPLLETLYLIG 517 (582)
Q Consensus 448 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~ 517 (582)
....|+|+.|+|+++........++. .-....|++|.+.+++-.+.+....... ....||+|..|+=..
T Consensus 240 sq~apklk~L~LS~N~~~~~~~~el~-K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 240 SQIAPKLKTLDLSHNHSKISSESELD-KLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVE 310 (585)
T ss_pred HHhcchhheeecccchhhhcchhhhh-hhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCcc
Confidence 33357888888888733322222222 2245667888888887665544332111 234678877776433
No 99
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=29.64 E-value=90 Score=24.88 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=32.8
Q ss_pred HHHHHHhCCcchHHHHHHHHHc-c-C-ChHHHHHHHHHHhccccccccchhhhHHHHHHHHHhhcCchhHHHHHHH
Q 048810 39 VEIVGRCGGLPVALITLAKALK-N-E-SLDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLL 111 (582)
Q Consensus 39 ~~i~~~c~GlPLai~~~g~~L~-~-~-~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly 111 (582)
..||++..+.+.+.-+--+... + . +.-+.+++++-+.. -.=-||.||.+ .|.||--
T Consensus 2 ~~Ivkk~n~t~v~~hl~~r~~~Ygd~s~~~DyqeAln~V~e----------------~~eaFd~LPa~-iRe~F~N 60 (114)
T PF09675_consen 2 NKIVKKFNKTGVIAHLEQRQPEYGDCSSPFDYQEALNMVAE----------------ANEAFDELPAH-IRERFNN 60 (114)
T ss_pred hHHHHHHccchHHHHHHhcCCcccccCCHHhHHHHHHHHHH----------------HHHHHHHchHH-HHHHhCC
Confidence 4678888888866555222222 1 1 24445555443222 12358999999 9999964
No 100
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=28.88 E-value=1.6e+02 Score=32.97 Aligned_cols=142 Identities=17% Similarity=0.145 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHHHHhccccccccchhhhHH
Q 048810 12 LSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE-SLDTWKDVLRQLRSSYAKEIDGMEKNVY 90 (582)
Q Consensus 12 L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~-~~~~W~~~l~~l~~~~~~~~~~~~~~i~ 90 (582)
++.||+-++|.......-. ..-.+.+.+..+|=+-|+..++=.+++. +.+.--..+.- ....+.
T Consensus 194 f~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG-----------~~~~l~ 258 (894)
T COG2909 194 FDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG-----------AASHLS 258 (894)
T ss_pred CChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc-----------hHHHHH
Confidence 6788998888876532222 2346778888889888888888888733 44333332221 111121
Q ss_pred H-HHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHHHhcccccc--CCC
Q 048810 91 L-SIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLKSLCLLLD--GDA 167 (582)
Q Consensus 91 ~-~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~--~~~ 167 (582)
. ...=-++.||++ +|...+-||+++.- . ++|+..-. .++.+..++++|-.+++|.. .+.
T Consensus 259 dYL~eeVld~Lp~~-l~~FLl~~svl~~f---~-~eL~~~Lt-------------g~~ng~amLe~L~~~gLFl~~Ldd~ 320 (894)
T COG2909 259 DYLVEEVLDRLPPE-LRDFLLQTSVLSRF---N-DELCNALT-------------GEENGQAMLEELERRGLFLQRLDDE 320 (894)
T ss_pred HHHHHHHHhcCCHH-HHHHHHHHHhHHHh---h-HHHHHHHh-------------cCCcHHHHHHHHHhCCCceeeecCC
Confidence 1 122335789998 89999999998621 1 23333221 12234457889999999863 356
Q ss_pred CccEEhhhHHHHHHHHHhc
Q 048810 168 EDEVKMHDVIRVVAVSIAE 186 (582)
Q Consensus 168 ~~~~~mhdl~~~l~~~~~~ 186 (582)
...++.|.+..||-..-..
T Consensus 321 ~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 321 GQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred CceeehhHHHHHHHHhhhc
Confidence 7889999999998765444
No 101
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=21.95 E-value=8e+02 Score=24.80 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=77.0
Q ss_pred ceEEccCCCHHHHHHHHHHhh---C-CCCCCcc-hHHHHHHHHHHhCCcchHHHHHHHHHc-----cC---ChHHHHHHH
Q 048810 5 KEIQIDVLSKEEALQLFKKIV---G-DSMKTSA-FQSIAVEIVGRCGGLPVALITLAKALK-----NE---SLDTWKDVL 71 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a---~-~~~~~~~-l~~~~~~i~~~c~GlPLai~~~g~~L~-----~~---~~~~W~~~l 71 (582)
..+.+++++.++..+++..++ | +...+++ ++.+++.+....|..+.|+.++-.+.. +. +.+..+.++
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~ 279 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAY 279 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 357899999999999999876 3 2222332 333444444445668888888754322 11 666777666
Q ss_pred HHHhccccccccchhhhHHHHHHHHHhhcCchhHHHHHHHh-c-cCCC-CCccChhHHHHH--hhccCcccccccHHHHH
Q 048810 72 RQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLC-G-LFSE-GHAIPVPYLLRY--GMGMGYFKEVYTVEEAR 146 (582)
Q Consensus 72 ~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~-~-~fp~-~~~i~~~~li~~--Wiaeg~~~~~~~~~~~~ 146 (582)
+.+. .....-.+..||.+ +..|++. + .... ...+...++... .+++.+-.... ..
T Consensus 280 ~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~----~~ 339 (394)
T PRK00411 280 EKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR----TH 339 (394)
T ss_pred HHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC----cH
Confidence 6531 12334568899986 5555553 2 2221 134555555432 22211100000 12
Q ss_pred HHHHHHHHHHHhcccccc
Q 048810 147 SRVHTLIGKLKSLCLLLD 164 (582)
Q Consensus 147 ~~~~~~~~~L~~~~l~~~ 164 (582)
..+.++++.|...+++..
T Consensus 340 ~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 340 TRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHHHHHHHHHHhcCCeEE
Confidence 345667888888888863
No 102
>PF14164 YqzH: YqzH-like protein
Probab=20.53 E-value=1.5e+02 Score=21.28 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=28.0
Q ss_pred EccCCCHHHHHHHHHHhhC--CCCCCcchHHHHHHHH
Q 048810 8 QIDVLSKEEALQLFKKIVG--DSMKTSAFQSIAVEIV 42 (582)
Q Consensus 8 ~l~~L~~~~~~~Lf~~~a~--~~~~~~~l~~~~~~i~ 42 (582)
+..+|+++|-..|+.+..- +.++..++.++...||
T Consensus 22 ~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVeDvV 58 (64)
T PF14164_consen 22 ECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVEDVV 58 (64)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 7789999998888877665 6667778888888776
Done!