Query 048810
Match_columns 582
No_of_seqs 340 out of 3090
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 23:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-26 6.5E-31 250.0 19.0 144 198-344 21-171 (606)
2 3t6q_A CD180 antigen; protein- 99.9 5.5E-26 1.9E-30 246.4 22.3 282 199-489 23-386 (606)
3 3v47_A TOLL-like receptor 5B a 99.9 1.7E-26 5.9E-31 241.3 16.7 354 200-573 22-406 (455)
4 3o6n_A APL1; leucine-rich repe 99.9 1E-25 3.6E-30 230.3 21.8 306 227-573 41-350 (390)
5 4eco_A Uncharacterized protein 99.9 1.8E-26 6E-31 250.5 16.8 307 248-573 198-577 (636)
6 4fmz_A Internalin; leucine ric 99.9 8.6E-26 2.9E-30 227.2 20.3 305 205-573 40-344 (347)
7 4ecn_A Leucine-rich repeat pro 99.9 3.4E-26 1.2E-30 252.7 17.9 304 253-574 444-818 (876)
8 3t6q_A CD180 antigen; protein- 99.9 5E-25 1.7E-29 238.8 25.6 352 205-574 125-559 (606)
9 1o6v_A Internalin A; bacterial 99.9 3.3E-25 1.1E-29 232.0 23.2 320 209-573 46-386 (466)
10 4ecn_A Leucine-rich repeat pro 99.9 8.5E-26 2.9E-30 249.5 19.3 335 205-573 444-838 (876)
11 2id5_A Lingo-1, leucine rich r 99.9 5.3E-25 1.8E-29 231.4 23.5 192 212-415 14-211 (477)
12 3rgz_A Protein brassinosteroid 99.9 1.2E-25 4.2E-30 249.5 19.6 344 208-576 268-718 (768)
13 2z63_A TOLL-like receptor 4, v 99.9 1.1E-25 3.8E-30 242.2 18.3 161 199-362 18-189 (570)
14 3oja_B Anopheles plasmodium-re 99.9 3.6E-25 1.2E-29 238.8 21.4 306 228-574 48-357 (597)
15 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-25 8.3E-30 238.4 19.7 356 200-574 17-509 (549)
16 3rgz_A Protein brassinosteroid 99.9 1.3E-25 4.4E-30 249.3 17.2 342 209-578 178-554 (768)
17 4eco_A Uncharacterized protein 99.9 1.6E-25 5.5E-30 243.0 17.3 154 205-363 202-390 (636)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-24 3.9E-29 231.5 23.2 106 452-574 374-480 (520)
19 2z81_A CD282 antigen, TOLL-lik 99.9 3.2E-25 1.1E-29 237.5 19.0 149 214-365 10-163 (549)
20 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-24 3.9E-29 236.0 19.4 192 212-413 14-213 (606)
21 2a5y_B CED-4; apoptosis; HET: 99.9 1.9E-26 6.6E-31 245.1 4.2 170 3-188 284-471 (549)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.4E-24 2.2E-28 227.7 22.2 141 212-361 34-180 (562)
23 2id5_A Lingo-1, leucine rich r 99.9 5.6E-24 1.9E-28 223.6 21.2 302 199-547 22-331 (477)
24 4fmz_A Internalin; leucine ric 99.9 1.1E-23 3.6E-28 211.9 21.8 282 205-547 62-344 (347)
25 2z63_A TOLL-like receptor 4, v 99.9 3.8E-24 1.3E-28 230.2 19.2 341 205-573 48-529 (570)
26 3j0a_A TOLL-like receptor 5; m 99.9 6.9E-24 2.4E-28 237.9 21.1 161 199-362 15-186 (844)
27 4g8a_A TOLL-like receptor 4; l 99.9 6.2E-24 2.1E-28 231.6 20.1 356 198-572 41-577 (635)
28 3v47_A TOLL-like receptor 5B a 99.9 1.3E-23 4.3E-28 219.6 21.6 339 212-578 13-386 (455)
29 1ziw_A TOLL-like receptor 3; i 99.9 8.3E-24 2.8E-28 232.4 20.9 162 199-363 15-184 (680)
30 1ziw_A TOLL-like receptor 3; i 99.9 2.3E-23 7.7E-28 229.0 22.7 337 212-572 7-363 (680)
31 3o6n_A APL1; leucine-rich repe 99.9 8.9E-24 3E-28 216.0 17.9 301 207-547 43-350 (390)
32 1o6v_A Internalin A; bacterial 99.9 2.9E-23 9.8E-28 217.3 21.7 301 229-573 44-364 (466)
33 3bz5_A Internalin-J, INLJ; leu 99.9 6.4E-23 2.2E-27 213.1 22.2 307 205-552 38-354 (457)
34 3j0a_A TOLL-like receptor 5; m 99.9 4.7E-23 1.6E-27 231.1 21.9 190 212-414 7-214 (844)
35 3oja_B Anopheles plasmodium-re 99.9 2.3E-23 7.8E-28 224.7 17.9 301 207-547 49-356 (597)
36 2ft3_A Biglycan; proteoglycan, 99.9 4.2E-23 1.4E-27 206.1 16.7 291 232-573 34-331 (332)
37 1xku_A Decorin; proteoglycan, 99.9 2.2E-22 7.6E-27 200.7 20.3 291 232-572 32-329 (330)
38 2z7x_B TOLL-like receptor 1, v 99.9 4.7E-23 1.6E-27 219.0 14.7 320 203-548 15-480 (520)
39 4fcg_A Uncharacterized protein 99.9 1.9E-22 6.6E-27 200.4 16.6 230 255-545 79-310 (328)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-22 4.1E-27 217.8 15.2 352 199-574 42-509 (562)
41 3bz5_A Internalin-J, INLJ; leu 99.9 2E-21 6.7E-26 201.9 23.3 278 205-524 60-354 (457)
42 1xku_A Decorin; proteoglycan, 99.9 2.1E-21 7E-26 193.7 20.1 291 208-546 30-329 (330)
43 2z80_A TOLL-like receptor 2, v 99.9 1E-21 3.6E-26 197.7 16.8 190 213-413 35-231 (353)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.6E-21 5.3E-26 194.7 17.6 288 209-547 33-331 (332)
45 4g8a_A TOLL-like receptor 4; l 99.9 5.8E-21 2E-25 208.1 23.1 344 213-573 35-553 (635)
46 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-21 3.9E-26 193.6 15.1 245 209-521 50-304 (313)
47 4fcg_A Uncharacterized protein 99.9 1.9E-21 6.5E-26 193.3 16.4 219 207-488 79-310 (328)
48 1jl5_A Outer protein YOPM; leu 99.9 5.1E-21 1.7E-25 198.6 20.1 178 208-415 90-268 (454)
49 1jl5_A Outer protein YOPM; leu 99.9 2.2E-20 7.7E-25 193.7 23.4 311 209-575 71-409 (454)
50 1ogq_A PGIP-2, polygalacturona 99.8 4.4E-21 1.5E-25 189.4 12.7 128 258-394 51-186 (313)
51 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-19 4.2E-24 194.0 23.4 260 208-551 39-298 (622)
52 2z80_A TOLL-like receptor 2, v 99.8 1.5E-20 5E-25 189.3 14.7 259 198-490 41-312 (353)
53 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-20 7.5E-25 182.1 14.4 204 200-414 23-235 (285)
54 3zyj_A Leucine-rich repeat-con 99.8 6.8E-20 2.3E-24 190.1 18.0 240 211-490 45-290 (440)
55 3zyi_A Leucine-rich repeat-con 99.8 7.8E-20 2.7E-24 190.4 18.3 240 211-490 56-301 (452)
56 2z66_A Variable lymphocyte rec 99.8 2.8E-20 9.6E-25 183.3 14.1 241 212-490 10-259 (306)
57 3o53_A Protein LRIM1, AGAP0063 99.8 9.1E-21 3.1E-25 187.7 9.3 253 245-576 22-276 (317)
58 3o53_A Protein LRIM1, AGAP0063 99.8 4.8E-21 1.6E-25 189.7 4.9 269 229-551 32-301 (317)
59 3zyi_A Leucine-rich repeat-con 99.8 5.8E-19 2E-23 183.8 19.4 240 233-517 56-299 (452)
60 1ozn_A Reticulon 4 receptor; N 99.8 4.4E-19 1.5E-23 172.8 17.0 173 212-396 14-191 (285)
61 3zyj_A Leucine-rich repeat-con 99.8 6.2E-19 2.1E-23 182.9 19.1 240 233-517 45-288 (440)
62 3sfz_A APAF-1, apoptotic pepti 99.8 2.2E-19 7.4E-24 210.9 16.9 170 2-187 275-451 (1249)
63 2z66_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 177.4 10.4 207 199-416 18-235 (306)
64 2o6q_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 164.9 17.8 194 210-415 17-216 (270)
65 1vt4_I APAF-1 related killer D 99.8 5.7E-19 1.9E-23 191.0 13.1 144 5-182 285-437 (1221)
66 1p9a_G Platelet glycoprotein I 99.8 2.7E-18 9.3E-23 167.2 16.5 196 207-415 8-206 (290)
67 1z7x_W Ribonuclease inhibitor; 99.8 3.1E-21 1E-25 201.8 -4.7 354 205-572 24-437 (461)
68 3oja_A Leucine-rich immune mol 99.8 1.1E-18 3.8E-23 182.8 12.6 235 257-570 34-270 (487)
69 1wwl_A Monocyte differentiatio 99.8 1.1E-19 3.6E-24 179.5 4.4 245 230-546 42-306 (312)
70 1h6u_A Internalin H; cell adhe 99.8 1.1E-17 3.7E-22 164.6 18.4 193 205-416 37-229 (308)
71 3oja_A Leucine-rich immune mol 99.8 4.4E-19 1.5E-23 185.8 8.4 239 230-519 33-273 (487)
72 2o6q_A Variable lymphocyte rec 99.8 7E-18 2.4E-22 162.8 15.6 186 199-395 27-218 (270)
73 2z62_A TOLL-like receptor 4, v 99.8 3.3E-18 1.1E-22 165.8 12.5 203 202-416 21-236 (276)
74 3ogk_B Coronatine-insensitive 99.8 7.3E-19 2.5E-23 189.8 8.6 151 207-358 162-326 (592)
75 3g06_A SSPH2 (leucine-rich rep 99.7 6E-17 2.1E-21 173.2 22.3 242 201-490 53-295 (622)
76 3ogk_B Coronatine-insensitive 99.7 2.6E-19 9E-24 193.3 1.7 347 210-576 139-526 (592)
77 1p9a_G Platelet glycoprotein I 99.7 2.2E-17 7.5E-22 160.8 14.7 169 229-411 8-179 (290)
78 2xwt_C Thyrotropin receptor; s 99.7 6.8E-18 2.3E-22 159.8 10.7 198 202-412 25-234 (239)
79 3m19_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 154.7 16.6 175 209-395 14-192 (251)
80 2z62_A TOLL-like receptor 4, v 99.7 2.9E-17 9.9E-22 159.1 13.6 143 215-362 13-161 (276)
81 3rfs_A Internalin B, repeat mo 99.7 3.9E-17 1.3E-21 157.7 13.5 175 205-392 37-215 (272)
82 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-19 6.6E-24 188.1 -3.3 347 208-573 2-409 (461)
83 2xwt_C Thyrotropin receptor; s 99.7 4.5E-17 1.5E-21 154.1 13.2 100 258-360 32-140 (239)
84 3rfs_A Internalin B, repeat mo 99.7 1.7E-16 5.8E-21 153.2 16.8 188 214-415 24-216 (272)
85 1h6t_A Internalin B; cell adhe 99.7 2.2E-16 7.4E-21 153.9 17.2 176 205-399 42-217 (291)
86 2p1m_B Transport inhibitor res 99.7 1E-18 3.6E-23 188.7 0.4 348 207-574 103-518 (594)
87 1wwl_A Monocyte differentiatio 99.7 5.1E-17 1.7E-21 160.3 11.3 34 452-490 274-307 (312)
88 1z6t_A APAF-1, apoptotic prote 99.7 1.6E-16 5.6E-21 171.1 15.5 165 5-185 276-449 (591)
89 1h6u_A Internalin H; cell adhe 99.7 5.1E-16 1.8E-20 152.6 17.8 177 205-400 59-235 (308)
90 2p1m_B Transport inhibitor res 99.7 3E-18 1E-22 185.1 1.4 357 207-574 64-493 (594)
91 4ay9_X Follicle-stimulating ho 99.7 2.7E-16 9.1E-21 157.7 15.5 236 260-545 12-255 (350)
92 1h6t_A Internalin B; cell adhe 99.7 3.6E-16 1.2E-20 152.3 14.0 182 216-416 31-212 (291)
93 2ast_B S-phase kinase-associat 99.7 4.4E-17 1.5E-21 162.7 7.6 223 233-518 49-282 (336)
94 3m19_A Variable lymphocyte rec 99.7 6.3E-16 2.2E-20 147.3 14.2 163 199-364 25-193 (251)
95 4ay9_X Follicle-stimulating ho 99.7 7.8E-16 2.7E-20 154.3 14.1 236 234-517 12-255 (350)
96 1m9s_A Internalin B; cell inva 99.6 1.5E-15 5E-20 162.3 14.9 176 205-399 39-214 (605)
97 2ast_B S-phase kinase-associat 99.6 3.2E-16 1.1E-20 156.4 8.7 175 209-393 70-258 (336)
98 3e6j_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 138.8 15.6 151 210-364 20-173 (229)
99 1xeu_A Internalin C; cellular 99.6 8.4E-16 2.9E-20 147.3 9.2 172 208-399 18-189 (263)
100 4glp_A Monocyte differentiatio 99.6 1.8E-16 6.3E-21 156.1 4.7 197 256-490 90-305 (310)
101 1m9s_A Internalin B; cell inva 99.6 4.1E-16 1.4E-20 166.6 7.6 185 213-416 25-209 (605)
102 2o6s_A Variable lymphocyte rec 99.6 2.7E-15 9.2E-20 138.6 12.1 170 212-400 10-184 (208)
103 4ezg_A Putative uncharacterize 99.6 2.6E-15 8.9E-20 137.3 11.2 150 229-395 42-194 (197)
104 4ezg_A Putative uncharacterize 99.6 4.6E-15 1.6E-19 135.7 12.3 151 205-363 40-194 (197)
105 2v9t_B SLIT homolog 2 protein 99.6 7E-15 2.4E-19 136.9 13.7 148 212-363 14-165 (220)
106 4glp_A Monocyte differentiatio 99.6 3.6E-15 1.2E-19 146.9 12.2 195 207-415 89-305 (310)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 1E-14 3.5E-19 135.7 13.6 148 212-363 14-166 (220)
108 3cvr_A Invasion plasmid antige 99.6 1.9E-14 6.5E-19 152.0 17.0 177 208-416 58-242 (571)
109 2ca6_A RAN GTPase-activating p 99.6 8.9E-16 3E-20 156.3 5.1 278 260-571 12-339 (386)
110 2ca6_A RAN GTPase-activating p 99.6 9.7E-16 3.3E-20 156.0 4.5 187 205-396 28-258 (386)
111 3goz_A Leucine-rich repeat-con 99.5 2.6E-15 9E-20 151.3 6.3 241 252-517 17-293 (362)
112 2xot_A Amphoterin-induced prot 99.5 1.4E-14 4.7E-19 145.8 11.1 171 212-394 21-201 (361)
113 2ell_A Acidic leucine-rich nuc 99.5 2.8E-14 9.6E-19 126.8 11.8 140 255-400 22-165 (168)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 3.2E-14 1.1E-18 132.4 12.4 148 234-395 14-166 (220)
115 2xot_A Amphoterin-induced prot 99.5 8.4E-15 2.9E-19 147.4 8.9 162 199-363 29-202 (361)
116 2o6s_A Variable lymphocyte rec 99.5 1.3E-14 4.6E-19 133.8 9.4 154 202-365 21-180 (208)
117 2v9t_B SLIT homolog 2 protein 99.5 4.3E-14 1.5E-18 131.5 12.7 146 234-393 14-163 (220)
118 1xeu_A Internalin C; cellular 99.5 6.4E-14 2.2E-18 134.1 13.2 150 205-364 37-186 (263)
119 3e6j_A Variable lymphocyte rec 99.5 1E-13 3.6E-18 129.8 12.8 148 233-395 21-172 (229)
120 3goz_A Leucine-rich repeat-con 99.5 4.7E-15 1.6E-19 149.4 1.8 64 253-316 46-123 (362)
121 3cvr_A Invasion plasmid antige 99.5 1.3E-13 4.4E-18 145.6 12.7 164 203-396 74-244 (571)
122 1dce_A Protein (RAB geranylger 99.5 2.1E-16 7.3E-21 167.8 -9.3 119 281-410 442-566 (567)
123 2ell_A Acidic leucine-rich nuc 99.4 3E-13 1E-17 120.1 10.5 133 206-343 21-164 (168)
124 2je0_A Acidic leucine-rich nuc 99.4 1.4E-13 4.9E-18 119.5 7.8 128 256-389 16-147 (149)
125 4b8c_D Glucose-repressible alc 99.4 2.5E-13 8.6E-18 148.8 10.7 155 208-364 172-330 (727)
126 1a9n_A U2A', U2A'; complex (nu 99.4 2.9E-13 1E-17 121.1 9.1 135 254-395 16-153 (176)
127 2wfh_A SLIT homolog 2 protein 99.4 1E-12 3.5E-17 119.3 12.2 106 257-363 31-139 (193)
128 1w8a_A SLIT protein; signaling 99.4 7.2E-13 2.5E-17 120.4 10.9 124 260-394 11-138 (192)
129 2je0_A Acidic leucine-rich nuc 99.4 6.6E-13 2.2E-17 115.3 9.1 102 254-357 39-147 (149)
130 1w8a_A SLIT protein; signaling 99.4 1.1E-12 3.7E-17 119.2 10.7 105 258-363 30-139 (192)
131 2wfh_A SLIT homolog 2 protein 99.4 2.4E-12 8.3E-17 116.8 11.9 124 260-394 13-138 (193)
132 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.4E-17 116.4 8.4 102 258-361 43-151 (176)
133 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.6E-17 143.8 7.5 110 229-342 222-332 (727)
134 2o6r_A Variable lymphocyte rec 99.3 1.6E-11 5.4E-16 109.9 12.2 105 257-362 28-136 (177)
135 1dce_A Protein (RAB geranylger 99.3 9.5E-12 3.2E-16 132.0 12.3 122 258-388 442-566 (567)
136 2o6r_A Variable lymphocyte rec 99.3 1.8E-11 6.3E-16 109.5 12.4 126 259-395 9-137 (177)
137 1ds9_A Outer arm dynein; leuci 99.3 1.3E-13 4.5E-18 126.0 -2.2 133 252-388 43-180 (198)
138 2r9u_A Variable lymphocyte rec 99.2 4.2E-11 1.4E-15 106.6 10.9 101 260-363 15-118 (174)
139 3g39_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 105.9 11.0 102 259-363 11-115 (170)
140 1ds9_A Outer arm dynein; leuci 99.2 5E-13 1.7E-17 122.1 -3.8 143 258-410 24-180 (198)
141 3sb4_A Hypothetical leucine ri 99.1 1.1E-10 3.9E-15 115.5 10.2 103 450-568 224-327 (329)
142 2r9u_A Variable lymphocyte rec 99.1 4.4E-10 1.5E-14 99.9 11.0 102 235-342 16-121 (174)
143 3sb4_A Hypothetical leucine ri 99.0 2.8E-10 9.5E-15 112.8 8.3 98 301-409 225-326 (329)
144 3g39_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 97.2 10.8 79 257-335 30-112 (170)
145 4fdw_A Leucine rich hypothetic 98.9 9.6E-08 3.3E-12 96.7 20.6 262 230-545 112-379 (401)
146 2ifg_A High affinity nerve gro 98.8 6.7E-09 2.3E-13 103.6 9.8 96 263-361 14-114 (347)
147 3un9_A NLR family member X1; l 98.8 6.3E-10 2.2E-14 111.6 2.0 167 205-395 68-252 (372)
148 4fdw_A Leucine rich hypothetic 98.7 2.7E-07 9.1E-12 93.4 16.8 254 209-517 113-379 (401)
149 3un9_A NLR family member X1; l 98.7 3E-09 1E-13 106.7 1.1 111 254-365 123-254 (372)
150 2ifg_A High affinity nerve gro 98.7 3.2E-08 1.1E-12 98.6 8.4 100 214-315 13-116 (347)
151 4fs7_A Uncharacterized protein 98.5 2.6E-06 9E-11 86.2 17.4 62 296-360 156-218 (394)
152 4fs7_A Uncharacterized protein 98.5 1.3E-06 4.3E-11 88.6 14.6 123 229-360 69-195 (394)
153 2ra8_A Uncharacterized protein 98.4 1.6E-07 5.4E-12 93.4 5.5 138 251-394 166-319 (362)
154 3e4g_A ATP synthase subunit S, 98.2 1.1E-06 3.7E-11 76.8 4.2 84 257-340 61-154 (176)
155 2ra8_A Uncharacterized protein 98.2 1.8E-06 6.3E-11 85.7 6.4 155 254-415 136-318 (362)
156 3e4g_A ATP synthase subunit S, 98.2 5.5E-07 1.9E-11 78.6 2.1 90 452-551 61-154 (176)
157 1io0_A Tropomodulin; LRR prote 98.1 2.2E-06 7.4E-11 76.7 4.5 111 251-362 30-163 (185)
158 4gt6_A Cell surface protein; l 98.1 0.00027 9.3E-09 71.3 20.1 81 477-571 286-366 (394)
159 3rw6_A Nuclear RNA export fact 97.9 9.3E-06 3.2E-10 76.4 6.2 78 254-331 167-257 (267)
160 1io0_A Tropomodulin; LRR prote 97.9 8.9E-06 3.1E-10 72.6 4.8 84 252-335 60-161 (185)
161 3rw6_A Nuclear RNA export fact 97.7 9.5E-06 3.3E-10 76.3 1.5 79 277-356 167-257 (267)
162 4gt6_A Cell surface protein; l 97.5 0.0057 1.9E-07 61.5 19.9 81 451-546 287-367 (394)
163 4h09_A Hypothetical leucine ri 97.4 0.0064 2.2E-07 60.7 17.4 122 229-360 44-168 (379)
164 4h09_A Hypothetical leucine ri 95.6 0.04 1.4E-06 54.8 9.7 103 252-358 212-318 (379)
165 2qen_A Walker-type ATPase; unk 95.6 0.26 8.7E-06 48.1 15.3 147 5-181 196-348 (350)
166 2fna_A Conserved hypothetical 95.0 0.34 1.1E-05 47.3 14.0 146 5-180 202-355 (357)
167 3rfe_A Platelet glycoprotein I 94.9 0.04 1.4E-06 45.3 5.9 55 306-363 12-68 (130)
168 3rfe_A Platelet glycoprotein I 94.9 0.035 1.2E-06 45.7 5.5 31 282-312 33-65 (130)
169 1pgv_A TMD-1, tropomodulin TMD 94.9 0.023 7.8E-07 50.3 4.4 82 253-334 37-135 (197)
170 1pgv_A TMD-1, tropomodulin TMD 94.1 0.043 1.5E-06 48.6 4.3 82 253-334 66-166 (197)
171 1w5s_A Origin recognition comp 92.4 0.25 8.7E-06 49.4 7.7 136 7-165 210-371 (412)
172 1hqc_A RUVB; extended AAA-ATPa 80.8 2.4 8.3E-05 40.5 6.4 69 5-74 161-238 (324)
173 1njg_A DNA polymerase III subu 76.2 4.1 0.00014 36.6 6.2 54 5-59 178-231 (250)
174 2v1u_A Cell division control p 67.3 79 0.0027 30.4 13.7 136 5-164 194-350 (387)
175 2qby_B CDC6 homolog 3, cell di 52.7 1.3E+02 0.0044 28.9 12.2 135 5-164 190-338 (384)
176 2qby_A CDC6 homolog 1, cell di 44.8 96 0.0033 29.7 9.8 136 5-164 190-347 (386)
177 1v54_E Cytochrome C oxidase po 34.0 74 0.0025 24.3 5.1 60 16-75 25-90 (109)
178 2chg_A Replication factor C sm 33.8 52 0.0018 28.4 5.3 51 6-59 155-207 (226)
179 1sxj_B Activator 1 37 kDa subu 31.4 65 0.0022 30.0 5.9 51 5-58 159-212 (323)
180 1fnn_A CDC6P, cell division co 28.1 3.9E+02 0.013 25.3 12.4 135 6-164 187-350 (389)
181 2lz0_A Uncharacterized protein 27.1 50 0.0017 25.0 3.3 44 245-289 8-52 (100)
182 2vda_B Maltoporin; sugar trans 24.0 36 0.0012 18.1 1.3 19 44-62 7-25 (28)
183 2y69_E Cytochrome C oxidase su 23.7 1.3E+02 0.0044 24.4 5.1 60 16-75 68-133 (152)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.9e-26 Score=250.01 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=122.2
Q ss_pred hhhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-Ch
Q 048810 198 DLEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PS 274 (582)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~ 274 (582)
..+..+|...+.+++++++++|.+..++.. .++++|++|+++++ ....+++..|.++++|++|++++|.++.+ |.
T Consensus 21 ~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 21 QKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC--EIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp SCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC--cccccCHHHhhchhhcCEeECCCCcccccChh
Confidence 445566666678999999999999887763 38999999999987 55667666779999999999999999886 78
Q ss_pred hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC--ccchhhcCCCCCCEEcccccccccccCcc
Q 048810 275 SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE--QLPLEIGQLRRLQLLDLSNCWTLEVIAPN 344 (582)
Q Consensus 275 ~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~ 344 (582)
.++++++|++|++++|.++. +..++++++|++|++++|.+. .+|..++++++|++|++++| .+..+++.
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~ 171 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVN 171 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTT
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChh
Confidence 89999999999999999988 477999999999999999988 57999999999999999984 55555443
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=5.5e-26 Score=246.43 Aligned_cols=282 Identities=14% Similarity=0.095 Sum_probs=193.0
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCC-CC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-Chh
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQ-RM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS 275 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~ 275 (582)
.+...|...+..++++++++|.+..++. .+ ++++|++|+++++ ....+.+..|.++++|++|++++|.++.+ |..
T Consensus 23 ~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 23 GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC--QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp CCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred CcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCC--ccceeChhhccCccccCeeeCCCCcccccChhh
Confidence 4445555667789999999999987754 33 8999999999987 45556666678999999999999998774 678
Q ss_pred hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccc-hhhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810 276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL 352 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L 352 (582)
++.+++|++|++++|.++. +..++++++|++|++++|.+..++ +.+..+++|++|++++ +.+..+++..++.+++|
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhccc
Confidence 9999999999999999888 577899999999999999888762 3344589999999998 46667766567888888
Q ss_pred c--EEEcCCCccccccccC-------------------------------------------------------------
Q 048810 353 E--ELYMGNSFKRWEKVEG------------------------------------------------------------- 369 (582)
Q Consensus 353 ~--~L~l~~~~~~~~~~~~------------------------------------------------------------- 369 (582)
+ .|++++|.+.......
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 8 7788777543220000
Q ss_pred -----C-CccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEeccc---cccccccccccccceecccceee
Q 048810 370 -----G-SNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLERLKSVS 439 (582)
Q Consensus 370 -----~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~~~~~~ 439 (582)
. .......++.+++|+.|++++|.+..+|..+ .+++|+.|++..+.. .+......+.++.+.+..+....
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 0 0001122667788888888888888887776 777888888766554 12234455566666665543221
Q ss_pred hccccch-HHHhhhcccceeeccccCcccc--cccccCCCCCCCCcEEEEeec
Q 048810 440 ILLRNPG-MRMLLQRTEDLWLETLEGVPSV--VHELDDGEGFPRLKHLYVESC 489 (582)
Q Consensus 440 ~l~~~~~-i~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~ 489 (582)
.+ +.. +.. +++|++|+++++...... +.. ++.+++|++|++++|
T Consensus 340 ~~--~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~---~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 340 EL--GTGCLEN-LENLRELDLSHDDIETSDCCNLQ---LRNLSHLQSLNLSYN 386 (606)
T ss_dssp BC--CSSTTTT-CTTCCEEECCSSCCCEEEESTTT---TTTCTTCCEEECCSC
T ss_pred cc--chhhhhc-cCcCCEEECCCCccccccCcchh---cccCCCCCEEECCCC
Confidence 10 222 222 366677777666533222 122 336666666666665
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.7e-26 Score=241.33 Aligned_cols=354 Identities=18% Similarity=0.176 Sum_probs=248.9
Q ss_pred hHHHHHhhccCcEEEEecCCCCcCCCC-CC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-Chhh
Q 048810 200 EKKMEETIRKDPIAISLPYRGDQVLPQ-RM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSL 276 (582)
Q Consensus 200 ~~~~~~~~~~~~~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i 276 (582)
++.+|. .+.++++|++++|.+..++. .+ .+++|++|+++++ .....++...|.++++|++|++++|.++.+ |..+
T Consensus 22 l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 22 LHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp CSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred cccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeCCCCccCccChhhc
Confidence 334443 55789999999999977643 33 8999999999987 344467777789999999999999999875 7789
Q ss_pred hcccCccEEEcCCCCCCC--ccc--cCCCCCccEEEeeCCCCCcc-chh-hcCCCCCCEEcccccccccccCcccccCC-
Q 048810 277 DRLINLQTLCLDGCRLKD--IAK--VGQLKKLEVLSFRDSDIEQL-PLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKL- 349 (582)
Q Consensus 277 ~~L~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l- 349 (582)
+++++|++|++++|.+++ +.. ++.+++|++|++++|.+..+ |.. ++++++|++|++++| .+..+++..+..+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQ 178 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGT
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccc
Confidence 999999999999999987 444 89999999999999999876 544 789999999999994 5555554446655
Q ss_pred -CcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccC-Cccc----ccccccEEEEEeccccccc---
Q 048810 350 -SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEIL-PQDL----VSVELQRYKMFIGEARGRW--- 420 (582)
Q Consensus 350 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~----~~~~L~~L~l~~~~~~~~~--- 420 (582)
.+|+.|++++|.................+..+++|+.|++++|.+... +..+ ...+|+.|.+..+......
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 688999998886544311111111122344667899999998877532 2222 3367777777544321000
Q ss_pred ----------cc--cccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEee
Q 048810 421 ----------FV--KSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVES 488 (582)
Q Consensus 421 ----------~~--~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 488 (582)
.. ....++.+.+..+...... +.++.. +++|+.|++++|......+..+ +.+++|++|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFSH-FTDLEQLTLAQNEINKIDDNAF---WGLTHLLKLNLSQ 332 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC--TTTTTT-CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCS
T ss_pred hhhccCcccccccccccCceEEEecCccccccc--hhhccc-CCCCCEEECCCCcccccChhHh---cCcccCCEEECCC
Confidence 00 1134555666554333321 344444 4899999999888555444443 4889999999999
Q ss_pred cCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceee
Q 048810 489 CSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVG 568 (582)
Q Consensus 489 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~ 568 (582)
|. +..++.. ....+++|++|++++ ++++.+.... ...+++|++|++++| +++.+|+. .+..+++|++|+
T Consensus 333 N~-l~~~~~~----~~~~l~~L~~L~Ls~-N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~ 401 (455)
T 3v47_A 333 NF-LGSIDSR----MFENLDKLEVLDLSY-NHIRALGDQS---FLGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIW 401 (455)
T ss_dssp SC-CCEECGG----GGTTCTTCCEEECCS-SCCCEECTTT---TTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEE
T ss_pred Cc-cCCcChh----HhcCcccCCEEECCC-CcccccChhh---ccccccccEEECCCC-ccccCCHh-HhccCCcccEEE
Confidence 84 4554322 356789999999998 4566654332 457899999999998 68888763 457899999999
Q ss_pred eccCc
Q 048810 569 VEECD 573 (582)
Q Consensus 569 i~~C~ 573 (582)
+++++
T Consensus 402 l~~N~ 406 (455)
T 3v47_A 402 LHTNP 406 (455)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 97654
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1e-25 Score=230.32 Aligned_cols=306 Identities=14% Similarity=0.148 Sum_probs=211.0
Q ss_pred CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCC
Q 048810 227 RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKK 303 (582)
Q Consensus 227 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~ 303 (582)
...+++++.|.+.++ ....+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.++. +..++.+++
T Consensus 41 ~~~l~~l~~l~l~~~--~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 41 DITLNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp SGGGCCCSEEEEESC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCCceEEEecCC--chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 345677777877775 566677777777888888888888777755 367778888888888887777 355777888
Q ss_pred ccEEEeeCCCCCccchhh-cCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCC
Q 048810 304 LEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLS 382 (582)
Q Consensus 304 L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 382 (582)
|++|++++|.++.+|..+ +++++|++|++++ +.+..+++..++.+++|++|++++|.+... .+..++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~l~ 186 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------DLSLIP 186 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------CGGGCT
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCcc-----------cccccc
Confidence 888888888887777764 6778888888877 456666655577778888888877765322 245566
Q ss_pred CccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccc
Q 048810 383 KLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETL 462 (582)
Q Consensus 383 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~ 462 (582)
+|+.|++++|.+..++ ...+|+.|+++.+............++.+.+..+.-. . .+++.. +++|++|++++|
T Consensus 187 ~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~---~~~l~~-l~~L~~L~Ls~n 258 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLA---IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-D---TAWLLN-YPGLVEVDLSYN 258 (390)
T ss_dssp TCSEEECCSSCCSEEE---CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-C---CGGGGG-CTTCSEEECCSS
T ss_pred ccceeecccccccccC---CCCcceEEECCCCeeeeccccccccccEEECCCCCCc-c---cHHHcC-CCCccEEECCCC
Confidence 7777777777655433 2345666666554431111122344555555554322 1 234444 489999999998
Q ss_pred cCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEE
Q 048810 463 EGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIE 542 (582)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~ 542 (582)
......+..+ +.+++|++|++++| .++.++. ....+|+|+.|+++++ +++.++.. .+.+++|+.|+
T Consensus 259 ~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~L~ 324 (390)
T 3o6n_A 259 ELEKIMYHPF---VKMQRLERLYISNN-RLVALNL-----YGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLENLY 324 (390)
T ss_dssp CCCEEESGGG---TTCSSCCEEECCSS-CCCEEEC-----SSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSEEE
T ss_pred cCCCcChhHc---cccccCCEEECCCC-cCcccCc-----ccCCCCCCCEEECCCC-cceecCcc----ccccCcCCEEE
Confidence 7555445444 48999999999998 4555542 2467899999999984 67766543 45789999999
Q ss_pred EecccCcccccChhHHhhhhhcceeeeccCc
Q 048810 543 VEHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 543 l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
+++| .++.++ +..+++|++|++.+++
T Consensus 325 L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 325 LDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred CCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 9998 477775 3678999999998865
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.8e-26 Score=250.53 Aligned_cols=307 Identities=11% Similarity=0.077 Sum_probs=173.8
Q ss_pred cChHHhcCCCCccEEEcCCCCCCC------------------CChhhh--cccCccEEEcCCCCCCC--ccccCCCCCcc
Q 048810 248 VSDHFFEGMEGLKVLQFPGIGSSS------------------LPSSLD--RLINLQTLCLDGCRLKD--IAKVGQLKKLE 305 (582)
Q Consensus 248 ~~~~~~~~l~~Lr~L~l~~~~~~~------------------lp~~i~--~L~~L~~L~L~~~~l~~--~~~~~~l~~L~ 305 (582)
+|.. |+++++|++|++++|.++. +|..++ ++++|++|++++|.+.. |..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4443 4667777777777777766 777766 77777777777776655 56677777777
Q ss_pred EEEeeCCC-CC--ccchhhcCC------CCCCEEcccccccccccCc--ccccCCCcccEEEcCCCccccccccC-----
Q 048810 306 VLSFRDSD-IE--QLPLEIGQL------RRLQLLDLSNCWTLEVIAP--NVISKLSRLEELYMGNSFKRWEKVEG----- 369 (582)
Q Consensus 306 ~L~l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~l~~lp~--~~l~~l~~L~~L~l~~~~~~~~~~~~----- 369 (582)
+|++++|+ ++ .+|..++++ ++|++|++++| .+..+|. . ++.+++|++|++++|.+... ++.
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~-ip~~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEGK-LPAFGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEEE-CCCCEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCccc-hhhhCCCC
Confidence 77777776 66 366666665 67777777663 4446665 3 66666777777666654421 000
Q ss_pred ----------CCccchhhccCCCC-ccEEEEEecccccCCccc---ccccccEEEEEecccc---ccccc-------ccc
Q 048810 370 ----------GSNASLVELNGLSK-LTTLEIHVRYAEILPQDL---VSVELQRYKMFIGEAR---GRWFV-------KSE 425 (582)
Q Consensus 370 ----------~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~---~~~~~-------~~~ 425 (582)
.....+..+.++++ |+.|++++|.+..+|..+ .+++|+.|+++.+... +.... ...
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 00123445666777 777777777777777655 2336777777655441 12222 333
Q ss_pred ccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccC-----CCCCCCCcEEEEeecCCceeeecccc
Q 048810 426 TSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDD-----GEGFPRLKHLYVESCSEILHIVGSVR 500 (582)
Q Consensus 426 ~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~~~ 500 (582)
.++.+.+..+.-... |..+...+++|+.|++++|... .++..... .+.+++|++|++++|. ++.++...
T Consensus 434 ~L~~L~Ls~N~l~~l---p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~- 507 (636)
T 4eco_A 434 NVSSINLSNNQISKF---PKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDF- 507 (636)
T ss_dssp CEEEEECCSSCCCSC---CTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGG-
T ss_pred CCCEEECcCCccCcC---CHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhh-
Confidence 556666665543333 5555554577888888777643 44433210 0122377777777763 44443220
Q ss_pred cccCCCCcccccccccccccccccccccccCcccCCCccEEEEeccc------CcccccChhHHhhhhhcceeeeccCc
Q 048810 501 RVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN------KLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 501 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
....+++|+.|++++ ++++.+|.. ...+++|+.|++++|. -...+|. .+..+++|++|++++|.
T Consensus 508 --~~~~l~~L~~L~Ls~-N~l~~ip~~----~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 508 --RATTLPYLVGIDLSY-NSFSKFPTQ----PLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSND 577 (636)
T ss_dssp --STTTCTTCCEEECCS-SCCSSCCCG----GGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC
T ss_pred --hhccCCCcCEEECCC-CCCCCcChh----hhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCc
Confidence 112566777777766 344444332 3345566666664322 1223332 23455555555555554
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=8.6e-26 Score=227.22 Aligned_cols=305 Identities=15% Similarity=0.129 Sum_probs=237.2
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
.....+++++++.++.+..++....+++|++|+++++ ....++. |..+++|++|++++|.++.+| .+..+++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n--~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN--QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCC--ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 4456789999999999988887668999999999987 4455555 689999999999999998876 5889999999
Q ss_pred EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
|++++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++| .+..++. ++.+++|++|++++|.+..
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc
Confidence 999999998855589999999999999955544445899999999999984 5666665 7889999999999887543
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehcccc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN 444 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~ 444 (582)
. ..+..+++|+.|++++|.+..++....+++|+.|+++.+.. . .. +
T Consensus 192 ~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~--------------------~~---~ 237 (347)
T 4fmz_A 192 I----------SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-T--------------------DL---S 237 (347)
T ss_dssp C----------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-C--------------------CC---G
T ss_pred c----------ccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-C--------------------CC---c
Confidence 2 23788899999999999888776644778888888765543 0 00 1
Q ss_pred chHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccccccccc
Q 048810 445 PGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETI 524 (582)
Q Consensus 445 ~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 524 (582)
. +.. +++|++|++++|.. +..+ . +..+++|++|++++| .+..++ ....+++|+.|++++| .+...
T Consensus 238 ~-~~~-l~~L~~L~l~~n~l-~~~~-~---~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~L~~n-~l~~~ 302 (347)
T 4fmz_A 238 P-LAN-LSQLTWLEIGTNQI-SDIN-A---VKDLTKLKMLNVGSN-QISDIS------VLNNLSQLNSLFLNNN-QLGNE 302 (347)
T ss_dssp G-GTT-CTTCCEEECCSSCC-CCCG-G---GTTCTTCCEEECCSS-CCCCCG------GGGGCTTCSEEECCSS-CCCGG
T ss_pred c-hhc-CCCCCEEECCCCcc-CCCh-h---HhcCCCcCEEEccCC-ccCCCh------hhcCCCCCCEEECcCC-cCCCc
Confidence 1 222 48999999999864 4332 2 458999999999998 344442 3567899999999996 45544
Q ss_pred ccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810 525 CCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 525 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
.... .+.+++|+.|++++|+ ++.+++ +..+++|++|++++|+
T Consensus 303 ~~~~---l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 303 DMEV---IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp GHHH---HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred ChhH---hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 3322 4578999999999995 777765 5789999999999986
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.4e-26 Score=252.72 Aligned_cols=304 Identities=12% Similarity=0.078 Sum_probs=156.9
Q ss_pred hcCCCCccEEEcCCCCCCC------------------CChhhh--cccCccEEEcCCCCCCC--ccccCCCCCccEEEee
Q 048810 253 FEGMEGLKVLQFPGIGSSS------------------LPSSLD--RLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFR 310 (582)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~~------------------lp~~i~--~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~ 310 (582)
|.++++|++|+|++|.++. +|+.++ ++++|++|+|++|.+.. |..++++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 3556666666666666655 666555 66666666666665544 5556666666666666
Q ss_pred CCC-CCc--cchhhcCCC-------CCCEEcccccccccccCc-ccccCCCcccEEEcCCCccccccccC----------
Q 048810 311 DSD-IEQ--LPLEIGQLR-------RLQLLDLSNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEG---------- 369 (582)
Q Consensus 311 ~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~---------- 369 (582)
+|+ ++. +|..+++++ +|++|++++ +.+..+|. ..++.+++|+.|++++|.+... +.
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l--p~~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTSCCCBC--CCCCTTSEESEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCCCcccc--hhhcCCCcceEE
Confidence 665 552 555544443 566666655 23445554 1255555566665555543311 00
Q ss_pred -----CCccchhhccCCCC-ccEEEEEecccccCCccc---ccccccEEEEEecccc---cccc---c--ccccccccee
Q 048810 370 -----GSNASLVELNGLSK-LTTLEIHVRYAEILPQDL---VSVELQRYKMFIGEAR---GRWF---V--KSETSRLMKL 432 (582)
Q Consensus 370 -----~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~---~~~~---~--~~~~l~~l~l 432 (582)
.....+..+.++++ |+.|++++|.+..+|..+ ..++|+.|+++.+... +.+. . ....++.+.+
T Consensus 601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp ECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred ECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 00012334445555 555555555555555443 1123555555444331 0000 0 1123445555
Q ss_pred cccceeehccccchHHHhhhcccceeeccccCcccccccccC-----CCCCCCCcEEEEeecCCceeeecccccccCCCC
Q 048810 433 ERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDD-----GEGFPRLKHLYVESCSEILHIVGSVRRVGCEVF 507 (582)
Q Consensus 433 ~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 507 (582)
..+.-... |.++...+++|+.|+|++|... .++..+.. .+.+++|++|+|++| .+..++... ....+
T Consensus 681 s~N~L~~l---p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l---~~~~l 752 (876)
T 4ecn_A 681 SYNEIQKF---PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDF---RATTL 752 (876)
T ss_dssp CSSCCCSC---CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGG---STTTC
T ss_pred cCCcCCcc---CHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCccchHHh---hhccC
Confidence 54433333 5555544578888888877643 44443320 112347888888877 344444220 11367
Q ss_pred cccccccccccccccccccccccCcccCCCccEEEEeccc------CcccccChhHHhhhhhcceeeeccCcc
Q 048810 508 PLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN------KLKHLFSFSMAKNLLWLQKVGVEECDE 574 (582)
Q Consensus 508 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~l~~~~~~~~l~~L~~L~i~~C~~ 574 (582)
++|+.|++++ ++++.+|.. ...+++|+.|++++|+ -...+|. .+.++++|++|++++|.-
T Consensus 753 ~~L~~L~Ls~-N~L~~lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 753 PYLSNMDVSY-NCFSSFPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TTCCEEECCS-SCCSSCCCG----GGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC
T ss_pred CCcCEEEeCC-CCCCccchh----hhcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCCC
Confidence 7777777776 455555432 4456666776665532 1223332 345666666666666643
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=5e-25 Score=238.84 Aligned_cols=352 Identities=13% Similarity=0.133 Sum_probs=187.8
Q ss_pred HhhccCcEEEEecCCCCcCC--CCCCCCCCccEEEeeccCccccccChHHhcCCCCcc--EEEcCCCCCCCCChhhhccc
Q 048810 205 ETIRKDPIAISLPYRGDQVL--PQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLK--VLQFPGIGSSSLPSSLDRLI 280 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr--~L~l~~~~~~~lp~~i~~L~ 280 (582)
.....+++.+++++|.+..+ +....+++|+.|+++++ ....+++..|+.+++|+ .|++++|.++.++.......
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN--AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS--CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccC--cccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence 44456777777777777655 44556778888888776 44455555566777776 66666666554332111110
Q ss_pred ----------------------------------------------------CccEEEcCCCCCCC--ccccCCCCCccE
Q 048810 281 ----------------------------------------------------NLQTLCLDGCRLKD--IAKVGQLKKLEV 306 (582)
Q Consensus 281 ----------------------------------------------------~L~~L~L~~~~l~~--~~~~~~l~~L~~ 306 (582)
+|++|++++|.++. +..++.+++|++
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 34445555555544 233556666666
Q ss_pred EEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccC----------------C
Q 048810 307 LSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEG----------------G 370 (582)
Q Consensus 307 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~----------------~ 370 (582)
|++++|.++.+|..++.+++|++|++++| .+..+++..++.+++|++|++++|......... .
T Consensus 283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 283 LDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp EECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred EeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 66666666666666666666666666663 344443333556666666666655432110000 0
Q ss_pred ---CccchhhccCCCCccEEEEEecccccCCcc-c-ccccccEEEEEecccc----ccccccccccccceecccceeehc
Q 048810 371 ---SNASLVELNGLSKLTTLEIHVRYAEILPQD-L-VSVELQRYKMFIGEAR----GRWFVKSETSRLMKLERLKSVSIL 441 (582)
Q Consensus 371 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~l 441 (582)
....+..+..+++|+.|++++|.+...+.. + .+++|+.|++..+... ..+....+.++.+.+..+......
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 000123344555555555555554433222 2 4455555555433320 111333444555555444222210
Q ss_pred cccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccc
Q 048810 442 LRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANL 521 (582)
Q Consensus 442 ~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 521 (582)
+.++.. +++|++|++++|............++.+++|++|++++|. +..++.. ....+++|+.|+++++ ++
T Consensus 442 --~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~Ls~N-~l 512 (606)
T 3t6q_A 442 --EQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQH----AFTSLKMMNHVDLSHN-RL 512 (606)
T ss_dssp --TTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTT----TTTTCTTCCEEECCSS-CC
T ss_pred --HHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChh----hhccccCCCEEECCCC-cc
Confidence 222332 3666666666665432111110113356777777777663 3333211 3456677778887773 45
Q ss_pred cccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810 522 ETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE 574 (582)
Q Consensus 522 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 574 (582)
+...... ...+++| .|++++| +++.+++ ..+..+++|+.|+++++|-
T Consensus 513 ~~~~~~~---l~~l~~L-~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 513 TSSSIEA---LSHLKGI-YLNLASN-HISIILP-SLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CGGGGGG---GTTCCSC-EEECCSS-CCCCCCG-GGHHHHHTSSEEECTTCCE
T ss_pred CcCChhH---hCccccc-EEECcCC-cccccCH-hhcccCCCCCEEeCCCCCc
Confidence 5443322 3467777 7888887 5666655 3567889999999988764
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3.3e-25 Score=231.99 Aligned_cols=320 Identities=16% Similarity=0.163 Sum_probs=175.4
Q ss_pred cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcC
Q 048810 209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD 288 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 288 (582)
.+++.+++.++.+..++....+++|+.|+++++ ....+++ +..+++|++|++++|.+..++. ++.+++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n--~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN--QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCC--ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 455555565555555554445556666666554 2333333 4555566666666665555554 5555566666666
Q ss_pred CCCCCCccccCCCCCccEEEeeCCCCCccch--------------------hhcCCCCCCEEcccccccccccCcccccC
Q 048810 289 GCRLKDIAKVGQLKKLEVLSFRDSDIEQLPL--------------------EIGQLRRLQLLDLSNCWTLEVIAPNVISK 348 (582)
Q Consensus 289 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--------------------~i~~l~~L~~L~l~~~~~l~~lp~~~l~~ 348 (582)
+|.++..+.+..+++|++|++++|.+..+|. .++++++|++|++++| .+..++. +..
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~ 197 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAK 197 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGG
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hcc
Confidence 5555553335555556666665555554442 1444555555555552 2344332 445
Q ss_pred CCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc-ccccccccccc
Q 048810 349 LSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA-RGRWFVKSETS 427 (582)
Q Consensus 349 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l 427 (582)
+++|++|++++|.+... ..++.+++|+.|++++|.+..++....+++|+.|+++.+.. ........+.+
T Consensus 198 l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L 267 (466)
T 1o6v_A 198 LTNLESLIATNNQISDI----------TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 267 (466)
T ss_dssp CTTCSEEECCSSCCCCC----------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred CCCCCEEEecCCccccc----------ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence 55555555555443221 12455666666666666665554333566666666655443 11113334445
Q ss_pred ccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCC
Q 048810 428 RLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVF 507 (582)
Q Consensus 428 ~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 507 (582)
+.+.+..+..... +. +.. +++|+.|++++|... ..+. ++.+++|++|++++|. +..++ ....+
T Consensus 268 ~~L~l~~n~l~~~---~~-~~~-l~~L~~L~L~~n~l~-~~~~----~~~l~~L~~L~L~~n~-l~~~~------~~~~l 330 (466)
T 1o6v_A 268 TELKLGANQISNI---SP-LAG-LTALTNLELNENQLE-DISP----ISNLKNLTYLTLYFNN-ISDIS------PVSSL 330 (466)
T ss_dssp SEEECCSSCCCCC---GG-GTT-CTTCSEEECCSSCCS-CCGG----GGGCTTCSEEECCSSC-CSCCG------GGGGC
T ss_pred CEEECCCCccCcc---cc-ccC-CCccCeEEcCCCccc-Cchh----hcCCCCCCEEECcCCc-CCCch------hhccC
Confidence 5555554432222 22 222 367777777766532 2222 3367777777777773 32221 24567
Q ss_pred cccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810 508 PLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 508 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
++|+.|+++++ +++.++ ....+++|+.|++++| ++..+++ +..+++|++|++.+|+
T Consensus 331 ~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 331 TKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred ccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 78888888774 455542 2557788888888888 4555553 4678888888888875
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=8.5e-26 Score=249.53 Aligned_cols=335 Identities=13% Similarity=0.065 Sum_probs=212.1
Q ss_pred HhhccCcEEEEecCCCCcC------------------CCCCC---CCCCccEEEeeccCccccccChHHhcCCCCccEEE
Q 048810 205 ETIRKDPIAISLPYRGDQV------------------LPQRM---RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQ 263 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~ 263 (582)
.....+++.|++++|.+.. +|..+ .+++|+.|++++| .....+|.. |.++++|++|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~-l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDF-LYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGG-GGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHH-HhCCCCCCEEE
Confidence 5567889999999999977 88876 5999999999988 456667754 58899999999
Q ss_pred cCCCC-CCC--CChhhhccc-------CccEEEcCCCCCCC-cc--ccCCCCCccEEEeeCCCCCccchhhcCCCCCCEE
Q 048810 264 FPGIG-SSS--LPSSLDRLI-------NLQTLCLDGCRLKD-IA--KVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL 330 (582)
Q Consensus 264 l~~~~-~~~--lp~~i~~L~-------~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 330 (582)
+++|. ++. +|..++.+. +|++|++++|.++. |. .++++++|++|++++|.+..+| .++.+++|++|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL 600 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE
Confidence 99998 875 888888877 99999999999888 66 7999999999999999999898 78999999999
Q ss_pred cccccccccccCcccccCCCc-ccEEEcCCCccccccccCCCccchhhccCCC--CccEEEEEecccccCCcc----c--
Q 048810 331 DLSNCWTLEVIAPNVISKLSR-LEELYMGNSFKRWEKVEGGSNASLVELNGLS--KLTTLEIHVRYAEILPQD----L-- 401 (582)
Q Consensus 331 ~l~~~~~l~~lp~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~----~-- 401 (582)
++++| .+..+|.. +..+++ |+.|++++|.+.. .+..+..+. +|+.|++++|.+...++. +
T Consensus 601 ~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~---------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 601 KLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLKY---------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp ECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCCS---------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred ECcCC-ccccchHH-HhhccccCCEEECcCCCCCc---------CchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 99994 56688876 788888 9999999987642 223333333 366666666655432211 1
Q ss_pred -ccccccEEEEEecccc--ccc-cccccccccceecccceeehccccchHHHh-------hhcccceeeccccCcccccc
Q 048810 402 -VSVELQRYKMFIGEAR--GRW-FVKSETSRLMKLERLKSVSILLRNPGMRML-------LQRTEDLWLETLEGVPSVVH 470 (582)
Q Consensus 402 -~~~~L~~L~l~~~~~~--~~~-~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~-------~~~L~~L~L~~~~~~~~~~~ 470 (582)
...+|+.|+++.+... +.. ....+.++.+.+..+.-... |.++... +++|+.|+|++|.. +.++.
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i---p~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~ 745 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI---PENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSD 745 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC---CTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCG
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc---ChHHhccccccccccCCccEEECCCCCC-ccchH
Confidence 2335555555544431 111 11234445555544322222 3322211 12666666666643 24443
Q ss_pred cccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccc-----c-ccccccccccCcccCCCccEEEEe
Q 048810 471 ELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLA-----N-LETICCSQLREDQSFSNLRIIEVE 544 (582)
Q Consensus 471 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~-L~~~~~~~~~~~~~~~~L~~L~l~ 544 (582)
.+. ...+++|+.|+|++|. +..++. ....+++|+.|++++++ + ...+|. ..+.+++|+.|+++
T Consensus 746 ~l~-~~~l~~L~~L~Ls~N~-L~~lp~-----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~----~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 746 DFR-ATTLPYLSNMDVSYNC-FSSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPT----GITTCPSLIQLQIG 814 (876)
T ss_dssp GGS-TTTCTTCCEEECCSSC-CSSCCC-----GGGGCTTCCEEECCCCBCTTCCBCCCCCCT----TGGGCSSCCEEECC
T ss_pred Hhh-hccCCCcCEEEeCCCC-CCccch-----hhhcCCCCCEEECCCCCCcccccccccChH----HHhcCCCCCEEECC
Confidence 321 1256666666666653 222321 23455666666665422 1 112221 13456666666666
Q ss_pred cccCcccccChhHHhhhhhcceeeeccCc
Q 048810 545 HCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 545 ~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
+| ++..+|.. -.++|+.|+|++|+
T Consensus 815 ~N-~L~~Ip~~----l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 815 SN-DIRKVDEK----LTPQLYILDIADNP 838 (876)
T ss_dssp SS-CCCBCCSC----CCSSSCEEECCSCT
T ss_pred CC-CCCccCHh----hcCCCCEEECCCCC
Confidence 66 34555542 22466666666664
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.3e-25 Score=231.39 Aligned_cols=192 Identities=20% Similarity=0.163 Sum_probs=128.6
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC 290 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~ 290 (582)
+.++.+++.+..+|... .++++.|+++++ ....++...|..+++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKN--RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCC--ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 34556666666666544 356777777776 44455555567777777777777777664 566777777777777777
Q ss_pred CCCC-c-cccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810 291 RLKD-I-AKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV 367 (582)
Q Consensus 291 ~l~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (582)
.++. + ..+.++++|++|++++|.+..+ |..+..+++|++|++++ +.+..+++..++.+++|++|++++|.+...
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 167 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSI-- 167 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSC--
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCccc--
Confidence 7776 3 3467777777777777777754 44567777777777777 455555555577777777777777755433
Q ss_pred cCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEecc
Q 048810 368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGE 415 (582)
Q Consensus 368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 415 (582)
....+.++++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 168 ------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 168 ------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp ------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred ------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 2345677777777777777776655432 66677777776543
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.2e-25 Score=249.51 Aligned_cols=344 Identities=19% Similarity=0.141 Sum_probs=184.3
Q ss_pred ccCcEEEEecCCCCc-CCCCCC-C-CCCccEEEeeccC-----------------------ccccccChHHhcCCCCccE
Q 048810 208 RKDPIAISLPYRGDQ-VLPQRM-R-CPRLGLFLLHTIG-----------------------LCSIQVSDHFFEGMEGLKV 261 (582)
Q Consensus 208 ~~~~~~l~l~~~~~~-~l~~~~-~-~~~L~~L~l~~~~-----------------------~~~~~~~~~~~~~l~~Lr~ 261 (582)
..+++++++++|.+. .+|... . +++|+.|+++++. .....+|...|..+++|++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 445666666666553 444433 2 3555555555540 1222344443444445555
Q ss_pred EEcCCCCCC-CCChhhhccc-CccEEEcCCCCCCC--ccccCC--CCCccEEEeeCCCCC-ccchhhcCCCCCCEEcccc
Q 048810 262 LQFPGIGSS-SLPSSLDRLI-NLQTLCLDGCRLKD--IAKVGQ--LKKLEVLSFRDSDIE-QLPLEIGQLRRLQLLDLSN 334 (582)
Q Consensus 262 L~l~~~~~~-~lp~~i~~L~-~L~~L~L~~~~l~~--~~~~~~--l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 334 (582)
|++++|.++ .+|..+..+. +|++|++++|.+.+ |..+.. +++|++|++++|.+. .+|..++++++|++|++++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 555554443 3444444444 45555555554443 333333 455666666666555 4555666666666666666
Q ss_pred cccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc-cCCccc-ccccccEEEEE
Q 048810 335 CWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQDL-VSVELQRYKMF 412 (582)
Q Consensus 335 ~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~ 412 (582)
|...+.+|.. ++.+++|+.|++++|.+... .+..+..+++|+.|++++|.+. .+|..+ .+++|+.|+++
T Consensus 428 N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 428 NYLSGTIPSS-LGSLSKLRDLKLWLNMLEGE--------IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp SEEESCCCGG-GGGCTTCCEEECCSSCCCSC--------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CcccCcccHH-HhcCCCCCEEECCCCcccCc--------CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 4332334433 56666666666666654433 3455666666666666666665 344444 56666666665
Q ss_pred eccc---cccccccccccccceecccceeehccccchHHHhhhcccceeeccccCccccccccc----------------
Q 048810 413 IGEA---RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD---------------- 473 (582)
Q Consensus 413 ~~~~---~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~---------------- 473 (582)
.+.. .+.+....+.++.+.+..+.....+ |..+..+ ++|+.|++++|.....+|..+.
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 5543 2344555556666666555433221 4444443 6666666666553322222110
Q ss_pred ---------------------------------------------------CCCCCCCCcEEEEeecCCceeeecccccc
Q 048810 474 ---------------------------------------------------DGEGFPRLKHLYVESCSEILHIVGSVRRV 502 (582)
Q Consensus 474 ---------------------------------------------------~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 502 (582)
.++.+++|++|++++|.-...+|.
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~----- 650 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK----- 650 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-----
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-----
Confidence 022345666677766643223332
Q ss_pred cCCCCccccccccccccccc-ccccccccCcccCCCccEEEEecccCcc-cccChhHHhhhhhcceeeeccCcchH
Q 048810 503 GCEVFPLLETLYLIGLANLE-TICCSQLREDQSFSNLRIIEVEHCNKLK-HLFSFSMAKNLLWLQKVGVEECDELK 576 (582)
Q Consensus 503 ~~~~~~~L~~L~l~~~~~L~-~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~i~~C~~L~ 576 (582)
..+.++.|+.|++++ ++++ .+|.. .+.+++|+.|++++|. +. .+|. .+..+++|++|++++++--.
T Consensus 651 ~l~~l~~L~~L~Ls~-N~l~g~ip~~----l~~L~~L~~LdLs~N~-l~g~ip~--~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 651 EIGSMPYLFILNLGH-NDISGSIPDE----VGDLRGLNILDLSSNK-LDGRIPQ--AMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GGGGCTTCCEEECCS-SCCCSCCCGG----GGGCTTCCEEECCSSC-CEECCCG--GGGGCCCCSEEECCSSEEEE
T ss_pred HHhccccCCEEeCcC-CccCCCCChH----HhCCCCCCEEECCCCc-ccCcCCh--HHhCCCCCCEEECcCCcccc
Confidence 245667777777776 3444 34332 5677788888888873 44 4542 45778888888888775433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=242.19 Aligned_cols=161 Identities=21% Similarity=0.231 Sum_probs=130.4
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hh
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SS 275 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~ 275 (582)
.+..+|...+..+++|++++|.+..++.. ..+++|++|+++++ ....+++..|.++++|++|++++|.++.+| ..
T Consensus 18 ~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCC--cCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 34445555567899999999999877643 38999999999987 566677777899999999999999998865 68
Q ss_pred hhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCc--cchhhcCCCCCCEEcccccccccccCcccccCCCc
Q 048810 276 LDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSR 351 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~ 351 (582)
++.+++|++|++++|.++. + ..++++++|++|++++|.+.. +|..++++++|++|++++ +.+..+++..++.+++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHHHT
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccchhc
Confidence 9999999999999999988 3 369999999999999998885 789999999999999998 4566666555666666
Q ss_pred c----cEEEcCCCcc
Q 048810 352 L----EELYMGNSFK 362 (582)
Q Consensus 352 L----~~L~l~~~~~ 362 (582)
| +.|++++|.+
T Consensus 175 L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 175 MPLLNLSLDLSLNPM 189 (570)
T ss_dssp CTTCCCEEECTTCCC
T ss_pred cchhhhhcccCCCCc
Confidence 6 6677666643
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.6e-25 Score=238.80 Aligned_cols=306 Identities=14% Similarity=0.150 Sum_probs=210.2
Q ss_pred CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCc
Q 048810 228 MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKL 304 (582)
Q Consensus 228 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L 304 (582)
..+++++.+.+.++ ....+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.++. +..++.+++|
T Consensus 48 l~l~~l~~l~l~~~--~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCC--CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 35667777777765 566677777777888888888888777754 377778888888888887777 3456778888
Q ss_pred cEEEeeCCCCCccchhh-cCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCC
Q 048810 305 EVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSK 383 (582)
Q Consensus 305 ~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 383 (582)
++|++++|.++.+|..+ +++++|++|++++| .+..+++..++.+++|++|++++|.+... .++.+++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~l~~ 193 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV-----------DLSLIPS 193 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC-----------CGGGCTT
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc-----------Chhhhhh
Confidence 88888888777777764 77788888888774 56666655577788888888877765332 2455667
Q ss_pred ccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeecccc
Q 048810 384 LTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLE 463 (582)
Q Consensus 384 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~ 463 (582)
|+.|++++|.+..++ ...+|+.|+++.+....-.......++.+.+..+.. .. +.++.. +++|+.|++++|.
T Consensus 194 L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l-~~---~~~l~~-l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 194 LFHANVSYNLLSTLA---IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TD---TAWLLN-YPGLVEVDLSYNE 265 (597)
T ss_dssp CSEEECCSSCCSEEE---CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC-CC---CGGGGG-CTTCSEEECCSSC
T ss_pred hhhhhcccCcccccc---CCchhheeeccCCcccccccccCCCCCEEECCCCCC-CC---Chhhcc-CCCCCEEECCCCc
Confidence 777777777665433 234566666655443111111223455555555432 22 344554 4899999999988
Q ss_pred CcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEE
Q 048810 464 GVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEV 543 (582)
Q Consensus 464 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l 543 (582)
.....+..+ +.+++|++|+|++| .+..++. ....+|+|+.|++++ +.+..+|.. .+.+++|+.|++
T Consensus 266 l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~-----~~~~l~~L~~L~Ls~-N~l~~i~~~----~~~l~~L~~L~L 331 (597)
T 3oja_B 266 LEKIMYHPF---VKMQRLERLYISNN-RLVALNL-----YGQPIPTLKVLDLSH-NHLLHVERN----QPQFDRLENLYL 331 (597)
T ss_dssp CCEEESGGG---TTCSSCCEEECTTS-CCCEEEC-----SSSCCTTCCEEECCS-SCCCCCGGG----HHHHTTCSEEEC
T ss_pred cCCCCHHHh---cCccCCCEEECCCC-CCCCCCc-----ccccCCCCcEEECCC-CCCCccCcc----cccCCCCCEEEC
Confidence 655555554 48999999999987 4555542 246689999999998 466666543 457899999999
Q ss_pred ecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810 544 EHCNKLKHLFSFSMAKNLLWLQKVGVEECDE 574 (582)
Q Consensus 544 ~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 574 (582)
++| .+..++ +..+++|+.|++.+++-
T Consensus 332 ~~N-~l~~~~----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 332 DHN-SIVTLK----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CSS-CCCCCC----CCTTCCCSEEECCSSCE
T ss_pred CCC-CCCCcC----hhhcCCCCEEEeeCCCC
Confidence 998 577765 36789999999988763
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.4e-25 Score=238.39 Aligned_cols=356 Identities=14% Similarity=0.146 Sum_probs=210.8
Q ss_pred hHHHHHhhccCcEEEEecCCCCcCCCC-C-CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh-h
Q 048810 200 EKKMEETIRKDPIAISLPYRGDQVLPQ-R-MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-L 276 (582)
Q Consensus 200 ~~~~~~~~~~~~~~l~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i 276 (582)
+...|......++++++++|.+..++. . ..+++|++|+++++ ....+++..|..+++|++|++++|.++.+|.. +
T Consensus 17 l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 17 FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS--RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred cccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCC--CcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 333443345678888888888876643 2 37888888888887 45556656668888888888888888887654 8
Q ss_pred hcccCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCC-CCccc-hhhcCCCCCCEEcccccccccccCcccccCCCc
Q 048810 277 DRLINLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSD-IEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSR 351 (582)
Q Consensus 277 ~~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~ 351 (582)
+.+++|++|++++|.++. +..++++++|++|++++|. +..+| ..++.+++|++|++++|...+..|.. ++.+++
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~ 173 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRD 173 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcccc
Confidence 888888888888888774 4668888888888888886 56666 45778888888888874332223332 555544
Q ss_pred ------------------------ccEEEcCCCccccccccCCC-c----------------------cchhhcc-----
Q 048810 352 ------------------------LEELYMGNSFKRWEKVEGGS-N----------------------ASLVELN----- 379 (582)
Q Consensus 352 ------------------------L~~L~l~~~~~~~~~~~~~~-~----------------------~~~~~l~----- 379 (582)
|++|++++|.+......... . .....+.
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 44454444433221000000 0 0000000
Q ss_pred ------------------------------------------------------CCCCccEEEEEecccccCCccc--cc
Q 048810 380 ------------------------------------------------------GLSKLTTLEIHVRYAEILPQDL--VS 403 (582)
Q Consensus 380 ------------------------------------------------------~l~~L~~L~l~~~~~~~~~~~~--~~ 403 (582)
...+|+.|++++|.+..+|..+ .+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 0123444444444444455443 35
Q ss_pred ccccEEEEEeccccc------cccccccccccceecccceeehccccc--hHHHhhhcccceeeccccCcccccccccCC
Q 048810 404 VELQRYKMFIGEARG------RWFVKSETSRLMKLERLKSVSILLRNP--GMRMLLQRTEDLWLETLEGVPSVVHELDDG 475 (582)
Q Consensus 404 ~~L~~L~l~~~~~~~------~~~~~~~~l~~l~l~~~~~~~~l~~~~--~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 475 (582)
++|+.|+++.+.... ......+.++.+.+..+.-... +. .....+++|+.|++++|. ++.++..+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~--- 406 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM---QKTGEILLTLKNLTSLDISRNT-FHPMPDSC--- 406 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH---HHHHHHGGGCTTCCEEECTTCC-CCCCCSCC---
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc---ccchhhhhcCCCCCEEECCCCC-CccCChhh---
Confidence 666666665544311 1123345555555555432211 11 111224778888888775 34454443
Q ss_pred CCCCCCcEEEEeecCCceeeecccc-------------cccCCCCcccccccccccccccccccccccCcccCCCccEEE
Q 048810 476 EGFPRLKHLYVESCSEILHIVGSVR-------------RVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIE 542 (582)
Q Consensus 476 ~~l~~L~~L~l~~~~~l~~~~~~~~-------------~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~ 542 (582)
+.+++|++|++++|. ++.+++... ......+++|+.|++++ ++++.+|. ...+++|+.|+
T Consensus 407 ~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~-N~l~~ip~-----~~~l~~L~~L~ 479 (549)
T 2z81_A 407 QWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR-NKLKTLPD-----ASLFPVLLVMK 479 (549)
T ss_dssp CCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS-SCCSSCCC-----GGGCTTCCEEE
T ss_pred cccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCC-CccCcCCC-----cccCccCCEEe
Confidence 367777777777764 333322100 00113567777777777 45665553 34578888888
Q ss_pred EecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810 543 VEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE 574 (582)
Q Consensus 543 l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 574 (582)
+++| +++.+++ ..+..+++|+.|++.+|+-
T Consensus 480 Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 480 ISRN-QLKSVPD-GIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCSS-CCCCCCT-TGGGGCTTCCEEECCSSCB
T ss_pred cCCC-ccCCcCH-HHHhcCcccCEEEecCCCc
Confidence 8887 6777765 3457888899999877663
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.3e-25 Score=249.34 Aligned_cols=342 Identities=16% Similarity=0.089 Sum_probs=167.5
Q ss_pred cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccCccEEEc
Q 048810 209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLINLQTLCL 287 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~~L~L 287 (582)
.+++++++++|.+........+++|++|+++++ .....+|. +..+++|++|++++|.++. +|..++.+++|++|++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSN-NFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSS-CCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCC-cCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 344444444444433333334555555555554 22222222 3555555555555555543 4455555555555555
Q ss_pred CCCCCCC-ccccCCCCCccEEEeeCCCCC-ccchhhcCC-CCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 288 DGCRLKD-IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQL-RRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 288 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
++|.+.+ ++.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|...+.+|.. ++.+++|++|++++|.+..
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC
Confidence 5555544 2222 4555555555555554 555555543 66666666664333344443 5666666666666665432
Q ss_pred ccccCCCccchhh-ccCCCCccEEEEEecccc-cCCccc-ccc-cccEEEEEeccc---ccccccc--ccccccceeccc
Q 048810 365 EKVEGGSNASLVE-LNGLSKLTTLEIHVRYAE-ILPQDL-VSV-ELQRYKMFIGEA---RGRWFVK--SETSRLMKLERL 435 (582)
Q Consensus 365 ~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~-~~~~~~-~~~-~L~~L~l~~~~~---~~~~~~~--~~~l~~l~l~~~ 435 (582)
. .+.. ++++++|+.|++++|.+. .+|..+ .+. +|+.|+++.+.. .+.+... .+.++.+.+..+
T Consensus 333 ~--------ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 333 E--------LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp E--------CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred c--------CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence 2 2322 666777777777766665 455544 343 566666554332 1111111 333444444443
Q ss_pred ceeehccccchHHHhhhcccceeeccccCccccccccc---------------------CCCCCCCCcEEEEeecCCcee
Q 048810 436 KSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD---------------------DGEGFPRLKHLYVESCSEILH 494 (582)
Q Consensus 436 ~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~---------------------~~~~l~~L~~L~l~~~~~l~~ 494 (582)
.....+ |.++..+ ++|+.|++++|......+..+. .++.+++|++|++++|.-...
T Consensus 405 ~l~~~~--p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 405 GFTGKI--PPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp EEEEEC--CGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cccccc--CHHHhcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 322111 3333332 4555555555443323333222 011444555555554432212
Q ss_pred eecccccccCCCCccccccccccccccc-ccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810 495 IVGSVRRVGCEVFPLLETLYLIGLANLE-TICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 495 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~-~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
++. ....+++|+.|+++++. +. .+|.. .+.+++|+.|++++|.-...+|. .+..+++|+.|++.+|+
T Consensus 482 ~p~-----~l~~l~~L~~L~L~~N~-l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 482 IPS-----GLSNCTNLNWISLSNNR-LTGEIPKW----IGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCG-----GGGGCTTCCEEECCSSC-CCSCCCGG----GGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSE
T ss_pred CCH-----HHhcCCCCCEEEccCCc-cCCcCChH----HhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCc
Confidence 111 23455666666666633 32 33321 45677777777777743334543 45677777777777776
Q ss_pred chHHH
Q 048810 574 ELKMI 578 (582)
Q Consensus 574 ~L~~i 578 (582)
-...|
T Consensus 550 l~g~i 554 (768)
T 3rgz_A 550 FNGTI 554 (768)
T ss_dssp EESBC
T ss_pred cCCcC
Confidence 44333
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.6e-25 Score=242.97 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=118.2
Q ss_pred HhhccCcEEEEecCCCCcC------------------CCCCCC---CCCccEEEeeccCccccccChHHhcCCCCccEEE
Q 048810 205 ETIRKDPIAISLPYRGDQV------------------LPQRMR---CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQ 263 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~------------------l~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~ 263 (582)
.....+++.|++++|.+.. +|..+. +++|+.|++++| .....+|.. |.++++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTF-LKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTT-TTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHH-HhcCCCCCEEE
Confidence 4556788888888888876 777654 888888888887 445566654 47888888888
Q ss_pred cCCCC-CCC--CChhhhcc------cCccEEEcCCCCCCC-cc--ccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEE
Q 048810 264 FPGIG-SSS--LPSSLDRL------INLQTLCLDGCRLKD-IA--KVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLL 330 (582)
Q Consensus 264 l~~~~-~~~--lp~~i~~L------~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L 330 (582)
+++|. ++. +|..++.+ ++|++|++++|.++. |. .++++++|++|++++|.+. .+| .++.+++|++|
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 88887 764 78878776 888888888888877 55 6888888888888888888 777 77778888888
Q ss_pred cccccccccccCcccccCCCc-ccEEEcCCCccc
Q 048810 331 DLSNCWTLEVIAPNVISKLSR-LEELYMGNSFKR 363 (582)
Q Consensus 331 ~l~~~~~l~~lp~~~l~~l~~-L~~L~l~~~~~~ 363 (582)
++++ +.+..+|.. ++.+++ |++|++++|.+.
T Consensus 359 ~L~~-N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 359 NLAY-NQITEIPAN-FCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp ECCS-SEEEECCTT-SEEECTTCCEEECCSSCCS
T ss_pred ECCC-CccccccHh-hhhhcccCcEEEccCCcCc
Confidence 8887 456677765 677777 888888777654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=231.48 Aligned_cols=106 Identities=16% Similarity=0.033 Sum_probs=62.4
Q ss_pred hcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCC-ccccccccccccccccccccccc
Q 048810 452 QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVF-PLLETLYLIGLANLETICCSQLR 530 (582)
Q Consensus 452 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~ 530 (582)
++|+.|++++|......+... ...+++|++|++++|.-...+ ...+ ++|+.|++++ .+++.+|..
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--------~~~l~~~L~~L~Ls~-N~l~~ip~~--- 439 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGD--CSWTKSLLSLNMSSNILTDTI--------FRCLPPRIKVLDLHS-NKIKSIPKQ--- 439 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCS--CCCCTTCCEEECCSSCCCGGG--------GGSCCTTCCEEECCS-SCCCCCCGG---
T ss_pred CCCCEEECCCCcCCcccccch--hccCccCCEEECcCCCCCcch--------hhhhcccCCEEECCC-Ccccccchh---
Confidence 455555555554333232221 224555555555555311111 1112 5788888877 356666543
Q ss_pred CcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810 531 EDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE 574 (582)
Q Consensus 531 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 574 (582)
...+++|++|++++| +++.+|.. .+..+++|++|++.+++-
T Consensus 440 -~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 440 -VVKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp -GGGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred -hhcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCCC
Confidence 346888999999888 67888763 357788899998887753
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=3.2e-25 Score=237.50 Aligned_cols=149 Identities=18% Similarity=0.136 Sum_probs=128.9
Q ss_pred EEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCC
Q 048810 214 ISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRL 292 (582)
Q Consensus 214 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l 292 (582)
.+.+++.+..+|.... ++|++|+++++ ....+++..|.++++|++|++++|.++.++ ..++.+++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFN--KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSS--CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccCC-CCccEEECcCC--ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 5677888888988664 89999999998 455665556799999999999999998865 6899999999999999999
Q ss_pred CC-c-cccCCCCCccEEEeeCCCCCc--cchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccc
Q 048810 293 KD-I-AKVGQLKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE 365 (582)
Q Consensus 293 ~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (582)
++ + ..++++++|++|++++|.++. .|..++++++|++|++++|..++.+|+..++.+++|++|++++|.+...
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 98 4 459999999999999999984 4678999999999999997768888876689999999999999876543
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.2e-24 Score=236.02 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=146.4
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC 290 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~ 290 (582)
+.++.+++.+..+|.... ++++.|+++++ ....++...|+++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFN--PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCC--CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 468889999999998664 89999999997 56677776789999999999999999886 568999999999999999
Q ss_pred CCCC--ccccCCCCCccEEEeeCCCCCccc-hhhcCCCCCCEEccccccccc--ccCcccccCCCcccEEEcCCCccccc
Q 048810 291 RLKD--IAKVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLE--VIAPNVISKLSRLEELYMGNSFKRWE 365 (582)
Q Consensus 291 ~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~--~lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (582)
.++. |..++++++|++|++++|.+..+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcceec
Confidence 9988 678999999999999999999877 66999999999999995 455 46665 89999999999999976543
Q ss_pred cccCCCccchhhccCCCC-ccEEEEEecccccCCccc-ccccccEEEEEe
Q 048810 366 KVEGGSNASLVELNGLSK-LTTLEIHVRYAEILPQDL-VSVELQRYKMFI 413 (582)
Q Consensus 366 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~ 413 (582)
. ......+.+++. +..|++++|.+..++... ...+|+.|++..
T Consensus 169 -~----~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 169 -T----VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp -C----TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred -C----hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence 0 011122222222 335555555555444433 222445554443
No 21
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=1.9e-26 Score=245.10 Aligned_cols=170 Identities=14% Similarity=0.142 Sum_probs=132.0
Q ss_pred CcceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhccccccc
Q 048810 3 SQKEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKEI 82 (582)
Q Consensus 3 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~ 82 (582)
+..+|+|++|+++|||+||+++||+...++++.+++++|+++|+|+||||+++|+.|+.++ |+.+ +.+..... +
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~-~- 357 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLE-S- 357 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHH-H-
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhh-c-
Confidence 3468999999999999999999996544688899999999999999999999999998774 4333 33322211 0
Q ss_pred cchhhhHHHHHHHHHhhcCchhHHHHHH-----------HhccCCCCCccChhHHHHHhhcc--Ccccccc---cHHHHH
Q 048810 83 DGMEKNVYLSIKLSYDFLRSEEAKSLFL-----------LCGLFSEGHAIPVPYLLRYGMGM--GYFKEVY---TVEEAR 146 (582)
Q Consensus 83 ~~~~~~i~~~l~~sy~~L~~~~lk~cfl-----------y~~~fp~~~~i~~~~li~~Wiae--g~~~~~~---~~~~~~ 146 (582)
....++.+++.+||++||.+ +|.||+ |||+||+++.|+ +++|+|+ ||+.... +.++++
T Consensus 358 -~~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 358 -RGLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp -HCSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred -ccHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 01356888999999999998 999999 999999999999 8999999 9997532 233333
Q ss_pred HHHHHHHHHHHhccccccCC--CCccEEhhhHHHHHHHHHhccC
Q 048810 147 SRVHTLIGKLKSLCLLLDGD--AEDEVKMHDVIRVVAVSIAEDE 188 (582)
Q Consensus 147 ~~~~~~~~~L~~~~l~~~~~--~~~~~~mhdl~~~l~~~~~~~~ 188 (582)
. ++++|+++||++... ...+|+|||++|++|+.++.++
T Consensus 432 ---~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 432 ---D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp ---H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred ---H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 3 789999999998653 3467999999999999888754
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=6.4e-24 Score=227.74 Aligned_cols=141 Identities=19% Similarity=0.211 Sum_probs=79.3
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC 290 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~ 290 (582)
++++++++.+..+|.... ++++.|+++++ ....+++..|..+++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP-PRTKALSLSQN--SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC-TTCCEEECCSS--CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCCC-CCcCEEECCCC--CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 556666666666655442 56666666665 34445544456666666666666666554 445666666666666666
Q ss_pred CCCC-ccccCCCCCccEEEeeCCCCCccc--hhhcCCCCCCEEcccccccccccCcccccCCCcc--cEEEcCCCc
Q 048810 291 RLKD-IAKVGQLKKLEVLSFRDSDIEQLP--LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL--EELYMGNSF 361 (582)
Q Consensus 291 ~l~~-~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L--~~L~l~~~~ 361 (582)
.++. |.. .+++|++|++++|.+..+| ..++++++|++|++++ +.+.... +..+++| ++|++++|.
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeeccc
Confidence 6665 333 5666666666666666443 4566666666666666 2333221 2333333 555555544
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=5.6e-24 Score=223.61 Aligned_cols=302 Identities=17% Similarity=0.104 Sum_probs=231.6
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-h
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-S 275 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~ 275 (582)
.+..+|...+..++.|++++|.+..++.. ..+++|+.|+++++ ....+++..|.++++|++|++++|.++.+|. .
T Consensus 22 ~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 99 (477)
T 2id5_A 22 RFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99 (477)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred CcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC--ccCEeChhhhhCCccCCEEECCCCcCCccCccc
Confidence 34445555667899999999999887542 38999999999987 5556656667999999999999999999886 4
Q ss_pred hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810 276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL 352 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L 352 (582)
++++++|++|++++|.+.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.+|...+..+++|
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGL 178 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCC
Confidence 7899999999999999988 57899999999999999999966 45689999999999999 57888887778999999
Q ss_pred cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccc-ccCCccc-ccccccEEEEEeccccccccccccccccc
Q 048810 353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA-EILPQDL-VSVELQRYKMFIGEARGRWFVKSETSRLM 430 (582)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l 430 (582)
+.|++++|.+... ....+..+++|+.|+++++.. ..++... ...+|+.|+++.+.. .
T Consensus 179 ~~L~l~~n~i~~~--------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~------------ 237 (477)
T 2id5_A 179 IVLRLRHLNINAI--------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-T------------ 237 (477)
T ss_dssp CEEEEESCCCCEE--------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-C------------
T ss_pred cEEeCCCCcCcEe--------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-c------------
Confidence 9999999876554 345688899999999998653 4455443 555888888876553 0
Q ss_pred eecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccc
Q 048810 431 KLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLL 510 (582)
Q Consensus 431 ~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 510 (582)
.. |......+++|+.|+|++|......+.. +..+++|++|++++|. +..+... ....+++|
T Consensus 238 --------~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L 298 (477)
T 2id5_A 238 --------AV---PYLAVRHLVYLRFLNLSYNPISTIEGSM---LHELLRLQEIQLVGGQ-LAVVEPY----AFRGLNYL 298 (477)
T ss_dssp --------SC---CHHHHTTCTTCCEEECCSSCCCEECTTS---CTTCTTCCEEECCSSC-CSEECTT----TBTTCTTC
T ss_pred --------cc---CHHHhcCccccCeeECCCCcCCccChhh---ccccccCCEEECCCCc-cceECHH----HhcCcccC
Confidence 01 2222222478889999888744333333 3478899999998874 4444322 35667889
Q ss_pred ccccccccccccccccccccCcccCCCccEEEEeccc
Q 048810 511 ETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN 547 (582)
Q Consensus 511 ~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~ 547 (582)
+.|++++ ++++.++...+ ..+++|+.|++++++
T Consensus 299 ~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 299 RVLNVSG-NQLTTLEESVF---HSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCS-SCCSCCCGGGB---SCGGGCCEEECCSSC
T ss_pred CEEECCC-CcCceeCHhHc---CCCcccCEEEccCCC
Confidence 9999988 46777665433 467889999888875
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.1e-23 Score=211.89 Aligned_cols=282 Identities=15% Similarity=0.110 Sum_probs=225.7
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
.....+++++++++|.+..++....+++|++|++.++ ....++ .|..+++|++|++++|.++.+|. +..+++|++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n--~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN--KITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC--cccCch--HHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 5567899999999999998888669999999999987 444454 36899999999999999999887 999999999
Q ss_pred EEcCCCCCC-CccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810 285 LCLDGCRLK-DIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 285 L~L~~~~l~-~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
|++++|... .++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|+.|++++|.+.
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCCC
Confidence 999999544 47779999999999999999998887 899999999999994 6777776 789999999999998754
Q ss_pred cccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccc
Q 048810 364 WEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLR 443 (582)
Q Consensus 364 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~ 443 (582)
.. ..+..+++|+.|++++|.+..++....+++|+.|+++.+.. ..
T Consensus 213 ~~----------~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~------------------------ 257 (347)
T 4fmz_A 213 DI----------TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI-SD------------------------ 257 (347)
T ss_dssp CC----------GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CC------------------------
T ss_pred CC----------chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCcc-CC------------------------
Confidence 33 22788999999999999999888744888999998865543 00
Q ss_pred cchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccc
Q 048810 444 NPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLET 523 (582)
Q Consensus 444 ~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 523 (582)
.+.+.. +++|+.|++++|.. +..+ . ++.+++|++|++++|. +...+. .....+++|+.|++++++ ++.
T Consensus 258 ~~~~~~-l~~L~~L~l~~n~l-~~~~-~---~~~l~~L~~L~L~~n~-l~~~~~----~~l~~l~~L~~L~L~~n~-l~~ 325 (347)
T 4fmz_A 258 INAVKD-LTKLKMLNVGSNQI-SDIS-V---LNNLSQLNSLFLNNNQ-LGNEDM----EVIGGLTNLTTLFLSQNH-ITD 325 (347)
T ss_dssp CGGGTT-CTTCCEEECCSSCC-CCCG-G---GGGCTTCSEEECCSSC-CCGGGH----HHHHTCTTCSEEECCSSS-CCC
T ss_pred ChhHhc-CCCcCEEEccCCcc-CCCh-h---hcCCCCCCEEECcCCc-CCCcCh----hHhhccccCCEEEccCCc-ccc
Confidence 011112 48999999999863 4443 2 4489999999999985 332211 134568999999999954 665
Q ss_pred cccccccCcccCCCccEEEEeccc
Q 048810 524 ICCSQLREDQSFSNLRIIEVEHCN 547 (582)
Q Consensus 524 ~~~~~~~~~~~~~~L~~L~l~~c~ 547 (582)
++. ...+++|++|++++|+
T Consensus 326 ~~~-----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IRP-----LASLSKMDSADFANQV 344 (347)
T ss_dssp CGG-----GGGCTTCSEESSSCC-
T ss_pred ccC-----hhhhhccceeehhhhc
Confidence 533 5679999999999984
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=230.21 Aligned_cols=341 Identities=15% Similarity=0.090 Sum_probs=198.7
Q ss_pred HhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccC
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLIN 281 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~ 281 (582)
.....++++|++++|.+..++.. ..+++|++|+++++ ....+++..|.++++|++|++++|.++.+|. .++++++
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC--cCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 44567888888888888776543 37888888888887 4556666667888888888888888888765 5888888
Q ss_pred ccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccc-hhhcCCCCC----CEEcccccccccccCc----------
Q 048810 282 LQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRL----QLLDLSNCWTLEVIAP---------- 343 (582)
Q Consensus 282 L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L----~~L~l~~~~~l~~lp~---------- 343 (582)
|++|++++|.++. |..++++++|++|++++|.++.++ ..++.+++| ++|++++| .+..+++
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n-~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC-CCCEECTTTTTTCEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC-CceecCHHHhccCccee
Confidence 8888888888765 677888888888888888777553 335544444 45555442 1111111
Q ss_pred -----------------------------------------------------------------------ccccCCCcc
Q 048810 344 -----------------------------------------------------------------------NVISKLSRL 352 (582)
Q Consensus 344 -----------------------------------------------------------------------~~l~~l~~L 352 (582)
..++.+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 113445667
Q ss_pred cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcc---------------------cccccccEEEE
Q 048810 353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD---------------------LVSVELQRYKM 411 (582)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------~~~~~L~~L~l 411 (582)
++|++++|.+... +..+..+ +|+.|++++|.+..+|.. ..+++|+.|++
T Consensus 285 ~~L~l~~~~l~~l---------~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 285 SSFSLVSVTIERV---------KDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp SEEEEESCEECSC---------CBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred cEEEecCccchhh---------hhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence 7777666643321 2223333 444444444433333221 23344555544
Q ss_pred Eecccc-----ccccccccccccceecccceeehc---------------------ccc-chHHHhhhcccceeeccccC
Q 048810 412 FIGEAR-----GRWFVKSETSRLMKLERLKSVSIL---------------------LRN-PGMRMLLQRTEDLWLETLEG 464 (582)
Q Consensus 412 ~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~l---------------------~~~-~~i~~~~~~L~~L~L~~~~~ 464 (582)
+.+... +......+.++.+.+..+...... ..+ ..+.. +++|+.|++++|..
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT-CTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc-CCCCCEEeCcCCcc
Confidence 433220 111222334444444333211110 001 11222 35666666666654
Q ss_pred cccccccccCCCCCCCCcEEEEeecCCc-eeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEE
Q 048810 465 VPSVVHELDDGEGFPRLKHLYVESCSEI-LHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEV 543 (582)
Q Consensus 465 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l 543 (582)
....+.. ++.+++|++|++++|.-. ..++ .....+++|+.|+++++ +++.+... ..+.+++|++|++
T Consensus 434 ~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~p-----~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l 501 (570)
T 2z63_A 434 RVAFNGI---FNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQC-QLEQLSPT---AFNSLSSLQVLNM 501 (570)
T ss_dssp EECCTTT---TTTCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTS-CCCEECTT---TTTTCTTCCEEEC
T ss_pred cccchhh---hhcCCcCcEEECcCCcCccccch-----hhhhcccCCCEEECCCC-ccccCChh---hhhcccCCCEEeC
Confidence 3333333 235677777777766422 1222 13556778888888774 45544222 1457788889998
Q ss_pred ecccCcccccChhHHhhhhhcceeeeccCc
Q 048810 544 EHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 544 ~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
++| +++.+++ ..+.++++|++|++++++
T Consensus 502 ~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 502 ASN-QLKSVPD-GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCC-cCCCCCH-HHhhcccCCcEEEecCCc
Confidence 888 6777765 345788889999988754
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=6.9e-24 Score=237.90 Aligned_cols=161 Identities=18% Similarity=0.266 Sum_probs=128.8
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCC-C-CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-Chh
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQ-R-MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS 275 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~ 275 (582)
.+...|. .+.++++|++++|.+..+.. . ..+++|++|+++++ .....+++..|.++++|++|+|++|.+..+ |..
T Consensus 15 ~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 3444455 67899999999999977643 3 38999999999998 456677677789999999999999999885 889
Q ss_pred hhcccCccEEEcCCCCCCC--ccc--cCCCCCccEEEeeCCCCCcc--chhhcCCCCCCEEcccccccccccCcccccCC
Q 048810 276 LDRLINLQTLCLDGCRLKD--IAK--VGQLKKLEVLSFRDSDIEQL--PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKL 349 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l 349 (582)
++++++|++|++++|.+++ |.. ++++++|++|++++|.+..+ +..++++++|++|++++| .+..+.+..++.+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccc
Confidence 9999999999999999987 544 99999999999999999865 357999999999999995 4544433335555
Q ss_pred --CcccEEEcCCCcc
Q 048810 350 --SRLEELYMGNSFK 362 (582)
Q Consensus 350 --~~L~~L~l~~~~~ 362 (582)
++|+.|++++|.+
T Consensus 172 ~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 172 QGKTLSFFSLAANSL 186 (844)
T ss_dssp HHCSSCCCEECCSBS
T ss_pred cCCccceEECCCCcc
Confidence 5666666666543
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=6.2e-24 Score=231.59 Aligned_cols=356 Identities=15% Similarity=0.153 Sum_probs=234.0
Q ss_pred hhhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-
Q 048810 198 DLEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS- 274 (582)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~- 274 (582)
..+..+|...+..+++|++++|.+..++.. .++++|++|++++| ....+++..|.++++|++|+|++|.++.+|.
T Consensus 41 ~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N--~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 41 LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp SCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC--cCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 345566666778999999999999988763 38999999999987 6677888888999999999999999999875
Q ss_pred hhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCC--ccchhhcCCCCCCEEcccccccccccCcccccCCC
Q 048810 275 SLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIE--QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLS 350 (582)
Q Consensus 275 ~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~ 350 (582)
.+++|++|++|++++|+++. + ..++++++|++|++++|.+. .+|..++.+++|++|++++| .++.+++..+..+.
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH 197 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchh
Confidence 58999999999999999998 3 46899999999999999887 46788999999999999984 45444332222111
Q ss_pred cc---------------------------cEEEcCCCc------------------------------------------
Q 048810 351 RL---------------------------EELYMGNSF------------------------------------------ 361 (582)
Q Consensus 351 ~L---------------------------~~L~l~~~~------------------------------------------ 361 (582)
++ +.+.+.++.
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 11 111111110
Q ss_pred --------------------------------------------------------------cccccc-----------c
Q 048810 362 --------------------------------------------------------------KRWEKV-----------E 368 (582)
Q Consensus 362 --------------------------------------------------------------~~~~~~-----------~ 368 (582)
+..... .
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 000000 0
Q ss_pred CCCccchhhccCCCCccEEEEEecccccCC---ccc-ccccccEEEEEeccc--cccccccccc----------------
Q 048810 369 GGSNASLVELNGLSKLTTLEIHVRYAEILP---QDL-VSVELQRYKMFIGEA--RGRWFVKSET---------------- 426 (582)
Q Consensus 369 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~-~~~~L~~L~l~~~~~--~~~~~~~~~~---------------- 426 (582)
............+++|+.|+++.|.+.... ... ...+|+.+++..+.. ..........
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 000000112235678899998887664321 111 445566665433221 0011111112
Q ss_pred ---------cccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeec
Q 048810 427 ---------SRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVG 497 (582)
Q Consensus 427 ---------l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 497 (582)
+..+.+..+..... ++.....+++++.|++++|.......+.. ++.+++|++|+|++| .++.++.
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~---~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~--~~~l~~L~~L~Ls~N-~L~~l~~ 511 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQC-QLEQLSP 511 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEEC---CTTTTTTCTTCCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTS-CCCEECT
T ss_pred ccccccccccccccccccccccc---cccccccchhhhhhhhhhcccccccCchh--hhhccccCEEECCCC-ccCCcCh
Confidence 22222222211111 22222335788899998887554433222 448899999999998 4666643
Q ss_pred ccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhh-hhcceeeeccC
Q 048810 498 SVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNL-LWLQKVGVEEC 572 (582)
Q Consensus 498 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l-~~L~~L~i~~C 572 (582)
. ....+++|++|++++ ++++.++... .+.+++|+.|+++++ +++.+++. .+.++ ++|+.|++.++
T Consensus 512 ~----~f~~l~~L~~L~Ls~-N~l~~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~-~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 512 T----AFNSLSSLQVLNMSH-NNFFSLDTFP---YKCLNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp T----TTTTCTTCCEEECTT-SCCCBCCCGG---GTTCTTCCEEECTTS-CCCBCCSS-CTTCCCTTCCEEECTTC
T ss_pred H----HHcCCCCCCEEECCC-CcCCCCChhH---HhCCCCCCEEECCCC-cCCCCCHH-HHHhhhCcCCEEEeeCC
Confidence 3 456789999999998 5777776543 357899999999998 67777663 44566 68999999653
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.3e-23 Score=219.60 Aligned_cols=339 Identities=14% Similarity=0.125 Sum_probs=246.1
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-C-ChhhhcccCccEEEcCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-L-PSSLDRLINLQTLCLDG 289 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-l-p~~i~~L~~L~~L~L~~ 289 (582)
+.++..++.+..+|. -.++++.|+++++ ....+++..|+++++|++|++++|.+.. + |..++.+++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLN--SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSS--CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCC--ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 457778888888888 3489999999997 5556656667999999999999999863 4 56799999999999999
Q ss_pred CCCCC--ccccCCCCCccEEEeeCCCCCc-cchh--hcCCCCCCEEccccccccccc-CcccccCCCcccEEEcCCCccc
Q 048810 290 CRLKD--IAKVGQLKKLEVLSFRDSDIEQ-LPLE--IGQLRRLQLLDLSNCWTLEVI-APNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 290 ~~l~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~~~l~~l~~L~~L~l~~~~~~ 363 (582)
|.++. |..++++++|++|++++|.++. .|.. ++.+++|++|++++| .+..+ |...++.+++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCccc
Confidence 99987 6789999999999999999985 4554 889999999999995 46665 5444789999999999999765
Q ss_pred cccccCCCccchhhccCC--CCccEEEEEecccccCCccc----------ccccccEEEEEecccc---ccccc---ccc
Q 048810 364 WEKVEGGSNASLVELNGL--SKLTTLEIHVRYAEILPQDL----------VSVELQRYKMFIGEAR---GRWFV---KSE 425 (582)
Q Consensus 364 ~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~~L~l~~~~~~---~~~~~---~~~ 425 (582)
.. .+..+..+ .+|+.|+++++.+..++... .+++|+.|+++.+... +.... ...
T Consensus 168 ~~--------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 168 SI--------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239 (455)
T ss_dssp CC--------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred cc--------ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence 44 33444444 68999999999888766442 4467888888766531 11111 113
Q ss_pred ccccceecccceeehc--------cccchHHH-hhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeee
Q 048810 426 TSRLMKLERLKSVSIL--------LRNPGMRM-LLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIV 496 (582)
Q Consensus 426 ~l~~l~l~~~~~~~~l--------~~~~~i~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 496 (582)
.++.+.+..+...... ..+..+.. ..++|+.|+++++......+..+ +.+++|++|++++|. +..++
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~ 315 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF---SHFTDLEQLTLAQNE-INKID 315 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT---TTCTTCCEEECTTSC-CCEEC
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc---ccCCCCCEEECCCCc-ccccC
Confidence 4444444432111000 00011111 12689999999988655555544 489999999999984 44443
Q ss_pred cccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcchH
Q 048810 497 GSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDELK 576 (582)
Q Consensus 497 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~ 576 (582)
.. ....+++|+.|+++++ ++..++... .+.+++|++|++++| +++.+++ ..+..+++|++|++++|. ++
T Consensus 316 ~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~ 384 (455)
T 3v47_A 316 DN----AFWGLTHLLKLNLSQN-FLGSIDSRM---FENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTNQ-LK 384 (455)
T ss_dssp TT----TTTTCTTCCEEECCSS-CCCEECGGG---GTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CS
T ss_pred hh----HhcCcccCCEEECCCC-ccCCcChhH---hcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCCc-cc
Confidence 22 3567899999999984 666664432 457899999999999 6777754 356789999999999863 44
Q ss_pred HH
Q 048810 577 MI 578 (582)
Q Consensus 577 ~i 578 (582)
.+
T Consensus 385 ~~ 386 (455)
T 3v47_A 385 SV 386 (455)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=8.3e-24 Score=232.43 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=123.7
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-h
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-S 275 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~ 275 (582)
.+...|...+.++++|++++|.+..++.. ..+++|++|+++++ ....+++..|+++++|++|++++|.++.+|. .
T Consensus 15 ~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 15 KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN--TISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp CCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS--CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred CccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC--ccCccCHHHHhcccCcCEEECCCCccCccChhh
Confidence 34444544557889999999988877763 37889999999887 4555656667888999999999998888886 5
Q ss_pred hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCccccc--CCC
Q 048810 276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVIS--KLS 350 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~--~l~ 350 (582)
++++++|++|++++|.++. +..++++++|++|++++|.+... |..++++++|++|++++| .+..+++..++ .++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANS 171 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTC
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccc
Confidence 8889999999999998887 35788889999999998888755 445778888999988884 56666554333 457
Q ss_pred cccEEEcCCCccc
Q 048810 351 RLEELYMGNSFKR 363 (582)
Q Consensus 351 ~L~~L~l~~~~~~ 363 (582)
+|++|++++|.+.
T Consensus 172 ~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 172 SLKKLELSSNQIK 184 (680)
T ss_dssp EESEEECTTCCCC
T ss_pred cccEEECCCCccc
Confidence 8888888877543
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.3e-23 Score=228.97 Aligned_cols=337 Identities=16% Similarity=0.071 Sum_probs=217.7
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC 290 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~ 290 (582)
+.++.+++.+..+|.... ++++.|+++++ ....++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCC--CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 468888889988987664 79999999997 56677877789999999999999999885 678999999999999999
Q ss_pred CCCC-cc-ccCCCCCccEEEeeCCCCCccc-hhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810 291 RLKD-IA-KVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV 367 (582)
Q Consensus 291 ~l~~-~~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (582)
.++. |+ .++++++|++|++++|.+..+| ..++++++|++|++++| .+...++..++++++|++|++++|.+...
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 160 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL-- 160 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB--
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccccc--
Confidence 9998 54 6999999999999999999887 46899999999999995 56666655588999999999999876443
Q ss_pred cCCCccchhhc--cCCCCccEEEEEecccccCCccc--ccccccEEEEEecccccccc------ccccccccceecccce
Q 048810 368 EGGSNASLVEL--NGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEARGRWF------VKSETSRLMKLERLKS 437 (582)
Q Consensus 368 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~------~~~~~l~~l~l~~~~~ 437 (582)
....+ ..+++|+.|++++|.+..++... .+.+|+.+.+.......... .....++.+.+..+..
T Consensus 161 ------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 161 ------KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp ------CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred ------CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 23333 35689999999999887766543 56666666653322200000 0113344444444322
Q ss_pred eehccccchHHHhh-hcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccc
Q 048810 438 VSILLRNPGMRMLL-QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLI 516 (582)
Q Consensus 438 ~~~l~~~~~i~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 516 (582)
.... +.++..+. ++|+.|++++|......+.. ++.+++|++|++++|. +..++.. ....+++|+.|++.
T Consensus 235 ~~~~--~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 235 STTS--NTTFLGLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQLEYFFLEYNN-IQHLFSH----SLHGLFNVRYLNLK 304 (680)
T ss_dssp CEEC--TTTTGGGGGSCCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSCC-BSEECTT----TTTTCTTCCEEECT
T ss_pred cccC--hhHhhccCcCCCCEEECCCCCcCccCccc---ccCcccccEeeCCCCc-cCccChh----hhcCCCCccEEecc
Confidence 1110 33333321 23777777766543333333 2366777777777663 3333211 23455666666665
Q ss_pred cccccc-----ccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccC
Q 048810 517 GLANLE-----TICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEEC 572 (582)
Q Consensus 517 ~~~~L~-----~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C 572 (582)
++..-. .++.-.-...+.+++|++|++++| .+..+++ ..+..+++|++|++.+|
T Consensus 305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTC
T ss_pred chhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCC
Confidence 422110 111000001334555666666555 3444433 12345555555555544
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=8.9e-24 Score=216.00 Aligned_cols=301 Identities=18% Similarity=0.198 Sum_probs=230.5
Q ss_pred hccCcEEEEecCCCCcCCCCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCcc
Q 048810 207 IRKDPIAISLPYRGDQVLPQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQ 283 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~ 283 (582)
...+++++++.++.+..+|... .+++|++|+++++ ....++...|..+++|++|++++|.++.+| ..++.+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC--cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 3578899999999998888854 7899999999987 556677667789999999999999998865 5589999999
Q ss_pred EEEcCCCCCCC-ccc-cCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 284 TLCLDGCRLKD-IAK-VGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 284 ~L~L~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
+|++++|.++. |.. ++++++|++|++++|.+..++. .++.+++|++|++++ +.++.++ ++.+++|+.|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeecccc
Confidence 99999999998 544 6889999999999999987755 488999999999999 5566664 567899999999887
Q ss_pred ccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc-cccccccccccccceecccceee
Q 048810 361 FKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA-RGRWFVKSETSRLMKLERLKSVS 439 (582)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~l~l~~~~~~~ 439 (582)
... .+....+|+.|++++|.+..++... .++|+.|++..+.. ...+....+.++.+.+..+.-..
T Consensus 197 ~l~-------------~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 197 LLS-------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CCS-------------EEECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred ccc-------------ccCCCCcceEEECCCCeeeeccccc-cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC
Confidence 543 2334457888888888887765543 46788888876654 23345566677777777664332
Q ss_pred hccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccc
Q 048810 440 ILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLA 519 (582)
Q Consensus 440 ~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 519 (582)
.. |..+.. +++|+.|++++|.. +.++.. .+.+|+|++|++++| .+..++. ....+++|+.|++++ +
T Consensus 263 ~~--~~~~~~-l~~L~~L~L~~n~l-~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~-N 328 (390)
T 3o6n_A 263 IM--YHPFVK-MQRLERLYISNNRL-VALNLY---GQPIPTLKVLDLSHN-HLLHVER-----NQPQFDRLENLYLDH-N 328 (390)
T ss_dssp EE--SGGGTT-CSSCCEEECCSSCC-CEEECS---SSCCTTCCEEECCSS-CCCCCGG-----GHHHHTTCSEEECCS-S
T ss_pred cC--hhHccc-cccCCEEECCCCcC-cccCcc---cCCCCCCCEEECCCC-cceecCc-----cccccCcCCEEECCC-C
Confidence 21 344444 48999999999874 444443 347999999999998 4555542 245689999999998 4
Q ss_pred cccccccccccCcccCCCccEEEEeccc
Q 048810 520 NLETICCSQLREDQSFSNLRIIEVEHCN 547 (582)
Q Consensus 520 ~L~~~~~~~~~~~~~~~~L~~L~l~~c~ 547 (582)
.++.++ ...+++|+.|++++++
T Consensus 329 ~i~~~~------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 329 SIVTLK------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCC------CCTTCCCSEEECCSSC
T ss_pred ccceeC------chhhccCCEEEcCCCC
Confidence 566553 5678999999999984
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.9e-23 Score=217.27 Aligned_cols=301 Identities=18% Similarity=0.173 Sum_probs=188.9
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEE
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLS 308 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~ 308 (582)
.+++++.|.+.++ ....++. +..+++|++|++++|.++.+|. ++.+++|++|++++|.+.....++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~--~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRL--GIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSS--CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred HhccccEEecCCC--CCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 4678999999887 4455654 5789999999999999999987 999999999999999999944499999999999
Q ss_pred eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810 309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388 (582)
Q Consensus 309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 388 (582)
+++|.++.+|. +.++++|++|++++| .+..++. ++.+++|++|++.++.. ....+.++++|+.|+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~~-----------~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQVT-----------DLKPLANLTTLERLD 183 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESCC-----------CCGGGTTCTTCCEEE
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCccc-----------CchhhccCCCCCEEE
Confidence 99999999887 999999999999995 5666664 67777887777753211 122356666666666
Q ss_pred EEecccccCCcccccccccEEEEEecccc-ccccccccccccceecccceeehccccchHHHhhhcccceeeccccCccc
Q 048810 389 IHVRYAEILPQDLVSVELQRYKMFIGEAR-GRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPS 467 (582)
Q Consensus 389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~ 467 (582)
+++|.+..++....+++|+.|++..+... .......+.++.+.+..+..... +.+.. +++|+.|++++|....
T Consensus 184 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~----~~l~~-l~~L~~L~l~~n~l~~- 257 (466)
T 1o6v_A 184 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI----GTLAS-LTNLTDLDLANNQISN- 257 (466)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC----GGGGG-CTTCSEEECCSSCCCC-
T ss_pred CcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc----hhhhc-CCCCCEEECCCCcccc-
Confidence 66666655544335566666665544330 00122233444444443321111 11222 2444444444443211
Q ss_pred cccccc-------------------CCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccccccccccccc
Q 048810 468 VVHELD-------------------DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQ 528 (582)
Q Consensus 468 ~~~~~~-------------------~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~ 528 (582)
.+. +. .++.+++|++|++++|. ++.++ ....+++|+.|+++++ ++..++.
T Consensus 258 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~------~~~~l~~L~~L~L~~n-~l~~~~~-- 326 (466)
T 1o6v_A 258 LAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDIS------PISNLKNLTYLTLYFN-NISDISP-- 326 (466)
T ss_dssp CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCCG------GGGGCTTCSEEECCSS-CCSCCGG--
T ss_pred chh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc-ccCch------hhcCCCCCCEEECcCC-cCCCchh--
Confidence 111 11 02245555555555542 22221 2345566666666663 3433321
Q ss_pred ccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810 529 LREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 529 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
.+.+++|++|++++| +++.++ .+..+++|+.|++++|+
T Consensus 327 ---~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ---GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC
T ss_pred ---hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc
Confidence 346677777777777 455553 34667777777777764
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=6.4e-23 Score=213.09 Aligned_cols=307 Identities=12% Similarity=0.070 Sum_probs=195.1
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
.....++++++++++.+..+|....+++|+.|+++++ ....++ ++.+++|++|++++|.++.+| ++.+++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n--~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN--NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS--CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC--cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 4456788999999999888875558889999999887 344444 578899999999999988876 888999999
Q ss_pred EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
|++++|.++..+ ++.+++|++|++++|.++.++ ++.+++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 111 L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence 999999888853 888899999999999888875 7888899999998876777663 6788889999988886543
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehcccc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN 444 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~ 444 (582)
. .++.+++|+.|++++|.+..++ ...+++|+.|+++.+....-.....+.++.+.+..+.--.. |
T Consensus 185 l-----------~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~---~ 249 (457)
T 3bz5_A 185 L-----------DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTEL---D 249 (457)
T ss_dssp C-----------CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC---C
T ss_pred e-----------ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCc---C
Confidence 2 1667777888888877777663 22667777777765554110022233344444433321111 1
Q ss_pred c-hHHHh------hhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccc---cccCCCCccccccc
Q 048810 445 P-GMRML------LQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVR---RVGCEVFPLLETLY 514 (582)
Q Consensus 445 ~-~i~~~------~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~~L~~L~ 514 (582)
. .+..+ ..+|+.|++++|.....++ .+.+++|+.|++++|..+..++.... ......+++|+.|+
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 0 00000 0234445555554333332 23567777777777766665542110 00122233444444
Q ss_pred ccccccccccccccccCcccCCCccEEEEecccCcccc
Q 048810 515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHL 552 (582)
Q Consensus 515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 552 (582)
+++ ++++.+ + .+.+++|+.|+++++ +++.+
T Consensus 325 L~~-N~l~~l-----~-l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 325 LNN-TELTEL-----D-VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp CTT-CCCSCC-----C-CTTCTTCSEEECCSS-CCCBC
T ss_pred CCC-Cccccc-----c-cccCCcCcEEECCCC-CCCCc
Confidence 443 223322 1 455666777776665 34443
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=4.7e-23 Score=231.12 Aligned_cols=190 Identities=17% Similarity=0.114 Sum_probs=147.8
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCC-CCC-ChhhhcccCccEEEcCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGS-SSL-PSSLDRLINLQTLCLDG 289 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-~~l-p~~i~~L~~L~~L~L~~ 289 (582)
+..+.+++++..+|. -.++++.|++++| ....+.+..|.++++|++|++++|.. ..+ |..++++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N--~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESC--CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCC--cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 567788899999998 5689999999998 45566556679999999999999954 445 78899999999999999
Q ss_pred CCCCC--ccccCCCCCccEEEeeCCCCCc-cchh--hcCCCCCCEEccccccccccc-CcccccCCCcccEEEcCCCccc
Q 048810 290 CRLKD--IAKVGQLKKLEVLSFRDSDIEQ-LPLE--IGQLRRLQLLDLSNCWTLEVI-APNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 290 ~~l~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~~~l~~l~~L~~L~l~~~~~~ 363 (582)
|.+.. |..++++++|++|++++|.+.. +|.. ++++++|++|++++| .+..+ ++..++++++|++|++++|.+.
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC
Confidence 99988 6889999999999999999985 5665 899999999999995 45554 3345899999999999998765
Q ss_pred cccccCCCccchhhccCC--CCccEEEEEecccccC-Cccc-ccc------cccEEEEEec
Q 048810 364 WEKVEGGSNASLVELNGL--SKLTTLEIHVRYAEIL-PQDL-VSV------ELQRYKMFIG 414 (582)
Q Consensus 364 ~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~-~~~~-~~~------~L~~L~l~~~ 414 (582)
.. .+..+..+ ++|+.|+++.|.+... +..+ .+. .|+.|+++.+
T Consensus 162 ~~--------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 162 LV--------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CC--------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred ee--------CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 43 23444444 6788888887766532 2221 222 3677776654
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.3e-23 Score=224.72 Aligned_cols=301 Identities=18% Similarity=0.198 Sum_probs=229.9
Q ss_pred hccCcEEEEecCCCCcCCCCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCcc
Q 048810 207 IRKDPIAISLPYRGDQVLPQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQ 283 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~ 283 (582)
...+++.+++.++.+..+|... .+++|++|+++++ ....+++..|..+++|++|++++|.++.+|. .++.+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC--CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3567889999999998888754 7899999999987 4556666667899999999999999988764 568999999
Q ss_pred EEEcCCCCCCC-ccc-cCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 284 TLCLDGCRLKD-IAK-VGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 284 ~L~L~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
+|++++|.++. |+. ++++++|++|++++|.+..+++ .++.+++|++|++++ +.+..++ ++.+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccC
Confidence 99999999988 544 6899999999999999987665 588999999999999 4666665 467889999999887
Q ss_pred ccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc-cccccccccccccceecccceee
Q 048810 361 FKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA-RGRWFVKSETSRLMKLERLKSVS 439 (582)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~l~l~~~~~~~ 439 (582)
.+. .+....+|+.|++++|.+..++... .++|+.|++..+.. ...+....+.++.+.+..+....
T Consensus 203 ~l~-------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 203 LLS-------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CCS-------------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred ccc-------------cccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC
Confidence 543 2344567888888888887766554 35788888876655 33455666777777777664333
Q ss_pred hccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccc
Q 048810 440 ILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLA 519 (582)
Q Consensus 440 ~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 519 (582)
.. |..+.. +++|+.|+|++|.. +.++.. .+.+|+|++|+|++|. +..++. ....+++|+.|++++ +
T Consensus 269 ~~--~~~~~~-l~~L~~L~Ls~N~l-~~l~~~---~~~l~~L~~L~Ls~N~-l~~i~~-----~~~~l~~L~~L~L~~-N 334 (597)
T 3oja_B 269 IM--YHPFVK-MQRLERLYISNNRL-VALNLY---GQPIPTLKVLDLSHNH-LLHVER-----NQPQFDRLENLYLDH-N 334 (597)
T ss_dssp EE--SGGGTT-CSSCCEEECTTSCC-CEEECS---SSCCTTCCEEECCSSC-CCCCGG-----GHHHHTTCSEEECCS-S
T ss_pred CC--HHHhcC-ccCCCEEECCCCCC-CCCCcc---cccCCCCcEEECCCCC-CCccCc-----ccccCCCCCEEECCC-C
Confidence 31 445554 48999999999874 444443 3479999999999984 445442 246789999999998 4
Q ss_pred cccccccccccCcccCCCccEEEEeccc
Q 048810 520 NLETICCSQLREDQSFSNLRIIEVEHCN 547 (582)
Q Consensus 520 ~L~~~~~~~~~~~~~~~~L~~L~l~~c~ 547 (582)
.+..++ .+.+++|+.|++++|+
T Consensus 335 ~l~~~~------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 335 SIVTLK------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCCC------CCTTCCCSEEECCSSC
T ss_pred CCCCcC------hhhcCCCCEEEeeCCC
Confidence 555543 5678999999999985
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4.2e-23 Score=206.08 Aligned_cols=291 Identities=15% Similarity=0.147 Sum_probs=203.4
Q ss_pred CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEE
Q 048810 232 RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLS 308 (582)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~ 308 (582)
+++.++++++ ....+|..+ .++|++|++++|.++.++ ..++++++|++|++++|.++. +..++++++|++|+
T Consensus 34 ~l~~l~~~~~--~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDL--GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSS--CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCC--CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 5777777765 444566544 367888888888888764 578888888888888888887 56788888899999
Q ss_pred eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810 309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388 (582)
Q Consensus 309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 388 (582)
+++|.++.+|..+. ++|++|++++ +.+..+|...++.+++|++|++++|.+... ...+..+..+ +|+.|+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS------GFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG------GSCTTSSCSC-CCSCCB
T ss_pred CCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC------CCCcccccCC-ccCEEE
Confidence 98888888887665 7888998888 567777776678888999999888876421 1134455666 888888
Q ss_pred EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810 389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV 468 (582)
Q Consensus 389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~ 468 (582)
+++|.+..+|..+. ++|+.|+++.+.. ... .+..+.. +++|+.|++++|......
T Consensus 179 l~~n~l~~l~~~~~-~~L~~L~l~~n~i---------------------~~~--~~~~l~~-l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP-ETLNELHLDHNKI---------------------QAI--ELEDLLR-YSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCSSBCSSCCSSSC-SSCSCCBCCSSCC---------------------CCC--CTTSSTT-CTTCSCCBCCSSCCCCCC
T ss_pred CcCCCCCccCcccc-CCCCEEECCCCcC---------------------Ccc--CHHHhcC-CCCCCEEECCCCcCCcCC
Confidence 88888888776653 5666666644332 000 0122322 378899999888754433
Q ss_pred cccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCc---ccCCCccEEEEec
Q 048810 469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLRED---QSFSNLRIIEVEH 545 (582)
Q Consensus 469 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~---~~~~~L~~L~l~~ 545 (582)
+..+ +.+++|++|++++| .++.++. ....+++|+.|++++ ++++.++...+... ..+++|+.|++.+
T Consensus 234 ~~~~---~~l~~L~~L~L~~N-~l~~lp~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 234 NGSL---SFLPTLRELHLDNN-KLSRVPA-----GLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp TTGG---GGCTTCCEEECCSS-CCCBCCT-----TGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred hhHh---hCCCCCCEEECCCC-cCeecCh-----hhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeec
Confidence 3343 37899999999988 4555542 256788999999988 67777766544311 2367899999999
Q ss_pred ccCcc-cccChhHHhhhhhcceeeeccCc
Q 048810 546 CNKLK-HLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 546 c~~L~-~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
++-.. .+++ ..+..+++|+.++++++.
T Consensus 304 N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred CcccccccCc-ccccccchhhhhhccccc
Confidence 87431 3333 356789999999998875
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.2e-22 Score=200.70 Aligned_cols=291 Identities=16% Similarity=0.195 Sum_probs=186.7
Q ss_pred CccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEE
Q 048810 232 RLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLS 308 (582)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~ 308 (582)
+++.+++.++ ....+|..+ .+.|++|++++|.++.+|. .++++++|++|++++|.++. |..++.+++|++|+
T Consensus 32 ~l~~l~~~~~--~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDL--GLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTS--CCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCC--CccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 4556665554 333444433 3567777777777777654 67777778888887777776 56677777888888
Q ss_pred eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810 309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388 (582)
Q Consensus 309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 388 (582)
+++|.++.+|..+. ++|++|++++ +.+..+++..++.+++|++|++++|..... ...+..+.++++|+.|+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSS------GIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGG------GBCTTGGGGCTTCCEEE
T ss_pred CCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCcc------CcChhhccCCCCcCEEE
Confidence 88777777776554 6788888877 456666666677788888888877765321 11345567777888888
Q ss_pred EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810 389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV 468 (582)
Q Consensus 389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~ 468 (582)
+++|.+..+|..+. ++|+.|+++.+.. .... +..+.. +++|+.|++++|......
T Consensus 178 l~~n~l~~l~~~~~-~~L~~L~l~~n~l-------------------~~~~----~~~~~~-l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 178 IADTNITTIPQGLP-PSLTELHLDGNKI-------------------TKVD----AASLKG-LNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CCSSCCCSCCSSCC-TTCSEEECTTSCC-------------------CEEC----TGGGTT-CTTCCEEECCSSCCCEEC
T ss_pred CCCCccccCCcccc-ccCCEEECCCCcC-------------------CccC----HHHhcC-CCCCCEEECCCCcCceeC
Confidence 88887777766543 6677776643332 0000 222333 377888888887644333
Q ss_pred cccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccC---cccCCCccEEEEec
Q 048810 469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLRE---DQSFSNLRIIEVEH 545 (582)
Q Consensus 469 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~---~~~~~~L~~L~l~~ 545 (582)
+..+ +.+++|++|++++| .+..++. ....+++|++|++++ ++++.++...+.. ....+.|+.|++++
T Consensus 233 ~~~~---~~l~~L~~L~L~~N-~l~~lp~-----~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 233 NGSL---ANTPHLRELHLNNN-KLVKVPG-----GLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp TTTG---GGSTTCCEEECCSS-CCSSCCT-----TTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred hhhc---cCCCCCCEEECCCC-cCccCCh-----hhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeec
Confidence 3333 36788888888887 3444432 245678888888887 5677776554421 12357888999998
Q ss_pred ccCcc-cccChhHHhhhhhcceeeeccC
Q 048810 546 CNKLK-HLFSFSMAKNLLWLQKVGVEEC 572 (582)
Q Consensus 546 c~~L~-~l~~~~~~~~l~~L~~L~i~~C 572 (582)
+|--. .+++ .....+++|+.++++++
T Consensus 303 N~~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 303 NPVQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred CcccccccCc-cccccccceeEEEeccc
Confidence 86322 2333 34567888888888775
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=219.02 Aligned_cols=320 Identities=12% Similarity=0.085 Sum_probs=190.7
Q ss_pred HHHhhccCcEEEEecCCCCcCCCC--CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhccc
Q 048810 203 MEETIRKDPIAISLPYRGDQVLPQ--RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLI 280 (582)
Q Consensus 203 ~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~ 280 (582)
.|...+.+++++++++|.+..++. ...+++|++|++++| ....+++..|.++++|++|++++|.++.+|.. .++
T Consensus 15 ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 15 VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN--RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp CCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS--CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred ccccccccccEEECCCCcccccChhhccccccccEEecCCC--ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 333334677777777777766653 236777777777776 44455445567777777777777777777765 677
Q ss_pred CccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchhhcCCCCC--CEEccccccc--ccccCcccccC-----
Q 048810 281 NLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRL--QLLDLSNCWT--LEVIAPNVISK----- 348 (582)
Q Consensus 281 ~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--l~~lp~~~l~~----- 348 (582)
+|++|++++|.++. |..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|.. ++.
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~ 167 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTES 167 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccce
Confidence 77777777777765 4667777777777777776654 223444444 5555555322 1111111 111
Q ss_pred ---------------------CC---------------------------------------------------------
Q 048810 349 ---------------------LS--------------------------------------------------------- 350 (582)
Q Consensus 349 ---------------------l~--------------------------------------------------------- 350 (582)
++
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 22
Q ss_pred cccEEEcCCCccccccccCCC-----------------------c-cchhh----------------------ccCCCCc
Q 048810 351 RLEELYMGNSFKRWEKVEGGS-----------------------N-ASLVE----------------------LNGLSKL 384 (582)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~-----------------------~-~~~~~----------------------l~~l~~L 384 (582)
+|++|++++|.+... ++... . ..... ...+++|
T Consensus 248 ~L~~L~l~~n~l~~~-~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 326 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQ-LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326 (520)
T ss_dssp SCSEEEEEEEEEESC-CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred cccEEEeecccccCc-cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence 222222222221100 00000 0 00000 1456667
Q ss_pred cEEEEEeccccc-CCccc-ccccccEEEEEecccc-----ccccccccccccceecccceee-hccccchHHHhhhcccc
Q 048810 385 TTLEIHVRYAEI-LPQDL-VSVELQRYKMFIGEAR-----GRWFVKSETSRLMKLERLKSVS-ILLRNPGMRMLLQRTED 456 (582)
Q Consensus 385 ~~L~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~-~l~~~~~i~~~~~~L~~ 456 (582)
+.|++++|.+.. .|..+ .+++|+.|+++.+... +......+.++.+.+..+.-.. . |......+++|+.
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l---~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE---KKGDCSWTKSLLS 403 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG---GGCSCCCCTTCCE
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc---ccchhccCccCCE
Confidence 777777666654 34444 6677777777655541 1223455666666666654332 2 3332223489999
Q ss_pred eeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCC
Q 048810 457 LWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFS 536 (582)
Q Consensus 457 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 536 (582)
|++++|......+..+ .++|++|++++| .++.++.. ...+++|+.|++++ ++++.++... ...++
T Consensus 404 L~Ls~N~l~~~~~~~l-----~~~L~~L~Ls~N-~l~~ip~~-----~~~l~~L~~L~L~~-N~l~~l~~~~---~~~l~ 468 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCL-----PPRIKVLDLHSN-KIKSIPKQ-----VVKLEALQELNVAS-NQLKSVPDGI---FDRLT 468 (520)
T ss_dssp EECCSSCCCGGGGGSC-----CTTCCEEECCSS-CCCCCCGG-----GGGCTTCCEEECCS-SCCCCCCTTT---TTTCT
T ss_pred EECcCCCCCcchhhhh-----cccCCEEECCCC-cccccchh-----hhcCCCCCEEECCC-CcCCccCHHH---hccCC
Confidence 9999988655444322 279999999998 45566532 34789999999999 5788777642 45789
Q ss_pred CccEEEEecccC
Q 048810 537 NLRIIEVEHCNK 548 (582)
Q Consensus 537 ~L~~L~l~~c~~ 548 (582)
+|++|++++++-
T Consensus 469 ~L~~L~l~~N~~ 480 (520)
T 2z7x_B 469 SLQKIWLHTNPW 480 (520)
T ss_dssp TCCEEECCSSCB
T ss_pred cccEEECcCCCC
Confidence 999999999853
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.9e-22 Score=200.41 Aligned_cols=230 Identities=23% Similarity=0.303 Sum_probs=156.3
Q ss_pred CCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccc
Q 048810 255 GMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLS 333 (582)
Q Consensus 255 ~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 333 (582)
...++++|+++++.++.+|..++++++|++|++++|.++. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4688999999999999999999999999999999999988 788999999999999999999999999999999999999
Q ss_pred ccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEE
Q 048810 334 NCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMF 412 (582)
Q Consensus 334 ~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 412 (582)
+|+..+.+|.. ++. .. ....+.++++|+.|++++|.+..+|..+ .+++|+.|+++
T Consensus 159 ~n~~~~~~p~~-~~~------~~-----------------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 159 ACPELTELPEP-LAS------TD-----------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR 214 (328)
T ss_dssp EETTCCCCCSC-SEE------EC------------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEE
T ss_pred CCCCccccChh-Hhh------cc-----------------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEcc
Confidence 98888888875 332 00 1122344555666666655555555444 44445555444
Q ss_pred eccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCc
Q 048810 413 IGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEI 492 (582)
Q Consensus 413 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 492 (582)
.+.. . .. |..+.. +++|+.|++++|......+..+ +.+++|++|++++|...
T Consensus 215 ~N~l-~--------------------~l---~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~---~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 215 NSPL-S--------------------AL---GPAIHH-LPKLEELDLRGCTALRNYPPIF---GGRAPLKRLILKDCSNL 266 (328)
T ss_dssp SSCC-C--------------------CC---CGGGGG-CTTCCEEECTTCTTCCBCCCCT---TCCCCCCEEECTTCTTC
T ss_pred CCCC-C--------------------cC---chhhcc-CCCCCEEECcCCcchhhhHHHh---cCCCCCCEEECCCCCch
Confidence 3332 0 00 222222 2667777777766666555543 36777777777776655
Q ss_pred eeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEec
Q 048810 493 LHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEH 545 (582)
Q Consensus 493 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~ 545 (582)
..++.. ...+++|+.|++++|+.+..+|.. .+.+++|+.+.+..
T Consensus 267 ~~~p~~-----~~~l~~L~~L~L~~n~~~~~iP~~----l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 267 LTLPLD-----IHRLTQLEKLDLRGCVNLSRLPSL----IAQLPANCIILVPP 310 (328)
T ss_dssp CBCCTT-----GGGCTTCCEEECTTCTTCCCCCGG----GGGSCTTCEEECCG
T ss_pred hhcchh-----hhcCCCCCEEeCCCCCchhhccHH----HhhccCceEEeCCH
Confidence 544322 345566666666666655555543 44566666665553
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.2e-22 Score=217.82 Aligned_cols=352 Identities=13% Similarity=0.015 Sum_probs=233.1
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCC--CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhh
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQ--RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL 276 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i 276 (582)
.++.+|...+.++++|++++|.+..++. ...+++|++|++++| ....+++..|.++++|++|++++|.++.+|..
T Consensus 42 ~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 118 (562)
T 3a79_B 42 NLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN--RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC- 118 (562)
T ss_dssp CCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC--CCCEECTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred CCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCC--CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence 4445555556899999999999988874 338999999999998 55667666779999999999999999999977
Q ss_pred hcccCccEEEcCCCCCCC---ccccCCCCCccEEEeeCCCCCccchhhcCCCCC--CEEccccccc--ccccCcc-----
Q 048810 277 DRLINLQTLCLDGCRLKD---IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRL--QLLDLSNCWT--LEVIAPN----- 344 (582)
Q Consensus 277 ~~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--l~~lp~~----- 344 (582)
.+++|++|++++|+++. |..++++++|++|++++|.+... .+..+++| ++|++++|.. ....|..
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccC
Confidence 89999999999999887 36899999999999999988752 34555666 9999988543 1222211
Q ss_pred --------------------cccCCCcccEEEcCCCccccccc-----------------------cC------------
Q 048810 345 --------------------VISKLSRLEELYMGNSFKRWEKV-----------------------EG------------ 369 (582)
Q Consensus 345 --------------------~l~~l~~L~~L~l~~~~~~~~~~-----------------------~~------------ 369 (582)
.+..+++|+.|++++|....... .+
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence 12234455555555542000000 00
Q ss_pred -----------C-Cccchhhc-----cCCC--------------------------CccEEEEEecccccCCcccccccc
Q 048810 370 -----------G-SNASLVEL-----NGLS--------------------------KLTTLEIHVRYAEILPQDLVSVEL 406 (582)
Q Consensus 370 -----------~-~~~~~~~l-----~~l~--------------------------~L~~L~l~~~~~~~~~~~~~~~~L 406 (582)
. .+..+..+ .+++ +|+.|++++|.+...+....+++|
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L 355 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCc
Confidence 0 00011111 1111 233333333333222211245677
Q ss_pred cEEEEEeccc---cccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcE
Q 048810 407 QRYKMFIGEA---RGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKH 483 (582)
Q Consensus 407 ~~L~l~~~~~---~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~ 483 (582)
+.|+++.+.. .+.+....+.++.+.+..+.--..-..|..+.. +++|+.|++++|......+... ...+++|++
T Consensus 356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~--~~~l~~L~~ 432 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRT--CAWAESILV 432 (562)
T ss_dssp CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCC--CCCCTTCCE
T ss_pred eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhh--hcCcccCCE
Confidence 7777766554 233455667777887776533221000122333 4899999999988655354432 347899999
Q ss_pred EEEeecCCceeeecccccccCCCC-cccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhh
Q 048810 484 LYVESCSEILHIVGSVRRVGCEVF-PLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLL 562 (582)
Q Consensus 484 L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~ 562 (582)
|++++|.-...+ ...+ ++|+.|++++ ++++.+|.. ...+++|+.|++++| +++.+|.. .+..++
T Consensus 433 L~l~~n~l~~~~--------~~~l~~~L~~L~L~~-N~l~~ip~~----~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~ 497 (562)
T 3a79_B 433 LNLSSNMLTGSV--------FRCLPPKVKVLDLHN-NRIMSIPKD----VTHLQALQELNVASN-QLKSVPDG-VFDRLT 497 (562)
T ss_dssp EECCSSCCCGGG--------GSSCCTTCSEEECCS-SCCCCCCTT----TTSSCCCSEEECCSS-CCCCCCTT-STTTCT
T ss_pred EECCCCCCCcch--------hhhhcCcCCEEECCC-CcCcccChh----hcCCCCCCEEECCCC-CCCCCCHH-HHhcCC
Confidence 999998522211 2233 6999999999 478877764 447899999999998 68888863 367899
Q ss_pred hcceeeeccCcc
Q 048810 563 WLQKVGVEECDE 574 (582)
Q Consensus 563 ~L~~L~i~~C~~ 574 (582)
+|+.|++++++-
T Consensus 498 ~L~~L~l~~N~~ 509 (562)
T 3a79_B 498 SLQYIWLHDNPW 509 (562)
T ss_dssp TCCCEECCSCCB
T ss_pred CCCEEEecCCCc
Confidence 999999988763
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2e-21 Score=201.86 Aligned_cols=278 Identities=14% Similarity=0.071 Sum_probs=199.4
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
.....+++++++++|.+..++ ...+++|+.|+++++ ....++ ++.+++|++|++++|.++.+| ++.+++|++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N--~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN--KLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS--CCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC--CCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 556788999999999998875 558899999999987 344443 578999999999999998886 889999999
Q ss_pred EEcCCCCCCCccccCCCCCccEEEeeCC-CCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810 285 LCLDGCRLKDIAKVGQLKKLEVLSFRDS-DIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
|++++|+++.. .++.+++|++|++++| .+..+ .++.+++|++|++++ +.++.+| ++.+++|+.|++++|.+.
T Consensus 132 L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~---l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 132 LNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELD---VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCC---CTTCTTCCEEECCSSCCS
T ss_pred EECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccceec---cccCCCCCEEECcCCcCC
Confidence 99999998885 3888899999999998 55566 377889999999998 4677776 678899999999888654
Q ss_pred cccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccc----------cceec
Q 048810 364 WEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSR----------LMKLE 433 (582)
Q Consensus 364 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~----------~l~l~ 433 (582)
.. .++.+++|+.|++++|.+..+| ...+++|+.|+++.+..........+.++ .+.+.
T Consensus 205 ~~-----------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 205 KL-----------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLT 272 (457)
T ss_dssp CC-----------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred ee-----------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECC
Confidence 32 3777888999999988888876 33778888888876654111122233333 33333
Q ss_pred ccceeehccccchHHHhhhcccceeeccccCccccccc------ccCCCCCCCCcEEEEeecCCceeeecccccccCCCC
Q 048810 434 RLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHE------LDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVF 507 (582)
Q Consensus 434 ~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 507 (582)
.+.....+ | . ..+++|+.|++++|...+.++.. +. ++.+++|++|++++|. ++.+ ....+
T Consensus 273 ~n~~~~~~--~--~-~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~-l~~~~~L~~L~L~~N~-l~~l-------~l~~l 338 (457)
T 3bz5_A 273 HNTQLIYF--Q--A-EGCRKIKELDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTE-LTEL-------DVSHN 338 (457)
T ss_dssp TCTTCCEE--E--C-TTCTTCCCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCCEEECTTCC-CSCC-------CCTTC
T ss_pred CCccCCcc--c--c-cccccCCEEECCCCcccceeccCCCcceEec-hhhcccCCEEECCCCc-cccc-------ccccC
Confidence 33222211 2 1 22489999999999876665432 11 3456677777776663 3322 35677
Q ss_pred ccccccccccccccccc
Q 048810 508 PLLETLYLIGLANLETI 524 (582)
Q Consensus 508 ~~L~~L~l~~~~~L~~~ 524 (582)
++|+.|++++ ++++.+
T Consensus 339 ~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 339 TKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp TTCSEEECCS-SCCCBC
T ss_pred CcCcEEECCC-CCCCCc
Confidence 8899998877 455443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.1e-21 Score=193.67 Aligned_cols=291 Identities=15% Similarity=0.152 Sum_probs=210.5
Q ss_pred ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEE
Q 048810 208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLC 286 (582)
Q Consensus 208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~ 286 (582)
..+++.++++++.+..+|... .++++.|+++++ ....++...|..+++|++|++++|.++.+ |..++.+++|++|+
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSC-CTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCccccCccC-CCCCeEEECCCC--cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 346788999999988888755 378999999987 56667776678999999999999999886 78899999999999
Q ss_pred cCCCCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccc--cCcccccCCCcccEEEcCCCcc
Q 048810 287 LDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNSFK 362 (582)
Q Consensus 287 L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~ 362 (582)
+++|.++. |..+. ++|++|++++|.+..++.. +.++++|++|++++| .+.. ..+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCcc
Confidence 99999888 55554 7999999999999987664 789999999999985 4432 3334488899999999999875
Q ss_pred ccccccCCCccchhhccCCCCccEEEEEecccccCCc-cc-ccccccEEEEEeccccccccccccccccceecccceeeh
Q 048810 363 RWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQ-DL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSI 440 (582)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 440 (582)
... +..+. ++|+.|++++|.+..++. .+ .+++|+.|+++.+.. . ...
T Consensus 184 ~~l---------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~------------------~~~- 232 (330)
T 1xku_A 184 TTI---------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-S------------------AVD- 232 (330)
T ss_dssp CSC---------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC-C------------------EEC-
T ss_pred ccC---------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-c------------------eeC-
Confidence 432 22222 789999999998887643 34 778888888765543 0 000
Q ss_pred ccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccc--cCCCCccccccccccc
Q 048810 441 LLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV--GCEVFPLLETLYLIGL 518 (582)
Q Consensus 441 l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~ 518 (582)
+.++.. +++|+.|++++|.. +.++..+ ..+++|++|++++|. ++.++...+.. ....++.|+.|++.+
T Consensus 233 ---~~~~~~-l~~L~~L~L~~N~l-~~lp~~l---~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~- 302 (330)
T 1xku_A 233 ---NGSLAN-TPHLRELHLNNNKL-VKVPGGL---ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS- 302 (330)
T ss_dssp ---TTTGGG-STTCCEEECCSSCC-SSCCTTT---TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS-
T ss_pred ---hhhccC-CCCCCEEECCCCcC-ccCChhh---ccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeec-
Confidence 223333 48999999999874 4555554 489999999999984 56555432211 122357889999987
Q ss_pred ccccccccccccCcccCCCccEEEEecc
Q 048810 519 ANLETICCSQLREDQSFSNLRIIEVEHC 546 (582)
Q Consensus 519 ~~L~~~~~~~~~~~~~~~~L~~L~l~~c 546 (582)
+.+..+...+- ....+++|+.++++++
T Consensus 303 N~~~~~~i~~~-~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 303 NPVQYWEIQPS-TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCGGGSCGG-GGTTCCCGGGEEC---
T ss_pred CcccccccCcc-ccccccceeEEEeccc
Confidence 44444322111 1457788999988875
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=197.71 Aligned_cols=190 Identities=18% Similarity=0.166 Sum_probs=124.8
Q ss_pred EEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCC
Q 048810 213 AISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCR 291 (582)
Q Consensus 213 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 291 (582)
..+.+++.+..+|.... ++|+.|+++++ ....++...|.++++|++|++++|.++.+ |..++++++|++|++++|+
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 36667777777776442 46777777766 44456655567777777777777777664 3457777777777777777
Q ss_pred CCC-ccc-cCCCCCccEEEeeCCCCCccch--hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810 292 LKD-IAK-VGQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV 367 (582)
Q Consensus 292 l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (582)
++. +.. ++.+++|++|++++|.++.+|. .++.+++|++|++++|..++.+++..++.+++|++|++++|.+...
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 189 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-- 189 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--
Confidence 776 333 6777777777777777777765 5667777777777776556666555567777777777777655433
Q ss_pred cCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEe
Q 048810 368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFI 413 (582)
Q Consensus 368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~ 413 (582)
.+..+.++++|+.|++++|.+..++... .+++|+.|+++.
T Consensus 190 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 190 ------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp ------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred ------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence 3455666777777777766665544433 344555555443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.6e-21 Score=194.69 Aligned_cols=288 Identities=16% Similarity=0.173 Sum_probs=205.7
Q ss_pred cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEc
Q 048810 209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCL 287 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L 287 (582)
..++.++++++.+..+|... .++++.|+++++ ....+++..|..+++|++|++++|.++.+ |..++.+++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCC--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 35788899999988888765 478999999987 45566666678999999999999999885 678999999999999
Q ss_pred CCCCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccc--cCcccccCCCcccEEEcCCCccc
Q 048810 288 DGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 288 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
++|.++. |..+. ++|++|++++|.+..+|.. +..+++|++|++++| .++. .++..++.+ +|++|++++|.+.
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 9999888 55554 8999999999999988765 788999999999985 4432 333446677 8999999988754
Q ss_pred cccccCCCccchhhccCCCCccEEEEEecccccCCcc-c-ccccccEEEEEeccccccccccccccccceecccceeehc
Q 048810 364 WEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD-L-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSIL 441 (582)
Q Consensus 364 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l 441 (582)
.. +..+. ++|+.|++++|.+..++.. + .+++|+.|+++.+.. ...
T Consensus 186 ~l---------~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l---------------------~~~- 232 (332)
T 2ft3_A 186 GI---------PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI---------------------RMI- 232 (332)
T ss_dssp SC---------CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC---------------------CCC-
T ss_pred cc---------Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC---------------------CcC-
Confidence 32 22222 6889999999988877643 3 677787777654433 000
Q ss_pred cccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccc--cCCCCcccccccccccc
Q 048810 442 LRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRV--GCEVFPLLETLYLIGLA 519 (582)
Q Consensus 442 ~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~ 519 (582)
.+.++.. +++|+.|++++|.. +.++..+. .+++|++|+++++. ++.++...+.. ....++.|+.|++.+.+
T Consensus 233 -~~~~~~~-l~~L~~L~L~~N~l-~~lp~~l~---~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 233 -ENGSLSF-LPTLRELHLDNNKL-SRVPAGLP---DLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp -CTTGGGG-CTTCCEEECCSSCC-CBCCTTGG---GCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred -ChhHhhC-CCCCCEEECCCCcC-eecChhhh---cCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence 0223333 48999999998874 45665543 79999999999874 55554332211 12236889999999844
Q ss_pred cccc--cccccccCcccCCCccEEEEeccc
Q 048810 520 NLET--ICCSQLREDQSFSNLRIIEVEHCN 547 (582)
Q Consensus 520 ~L~~--~~~~~~~~~~~~~~L~~L~l~~c~ 547 (582)
+.. ++... ...+++|+.+++++|.
T Consensus 306 -~~~~~~~~~~---~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 306 -VPYWEVQPAT---FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -SCGGGSCGGG---GTTBCCSTTEEC----
T ss_pred -ccccccCccc---ccccchhhhhhccccc
Confidence 442 22222 4578899999998874
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=5.8e-21 Score=208.07 Aligned_cols=344 Identities=16% Similarity=0.113 Sum_probs=226.2
Q ss_pred EEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCC
Q 048810 213 AISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCR 291 (582)
Q Consensus 213 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~ 291 (582)
..+-++.++..+|..+. ++++.|++++| ....+++..|.++++|++|+|++|.++.+|+ .+++|++|++|+|++|+
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCC--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 34455566778887552 47999999998 6778888888999999999999999999765 68999999999999999
Q ss_pred CCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccC-cccccCCCcccEEEcCCCccccccc
Q 048810 292 LKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIA-PNVISKLSRLEELYMGNSFKRWEKV 367 (582)
Q Consensus 292 l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp-~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (582)
++. | ..+.++++|++|++++|+++.+|.. ++++++|++|++++| .+..++ +..++.+++|++|++++|.+.....
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccccccc
Confidence 998 4 5689999999999999999999875 899999999999995 555432 2347899999999999986432100
Q ss_pred cC-----------------------------------------CCcc---------------------------------
Q 048810 368 EG-----------------------------------------GSNA--------------------------------- 373 (582)
Q Consensus 368 ~~-----------------------------------------~~~~--------------------------------- 373 (582)
.. ....
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 00 0000
Q ss_pred -------------------------------------------------chhhccCCCCccEEEEEecccccCC------
Q 048810 374 -------------------------------------------------SLVELNGLSKLTTLEIHVRYAEILP------ 398 (582)
Q Consensus 374 -------------------------------------------------~~~~l~~l~~L~~L~l~~~~~~~~~------ 398 (582)
....+....+|+.|++..+.+..++
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 350 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 350 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTT
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchh
Confidence 0001112224445555444332221
Q ss_pred ---------------cccccccccEEEEEecccc-----ccccccccccccceecccceeeh------------c-----
Q 048810 399 ---------------QDLVSVELQRYKMFIGEAR-----GRWFVKSETSRLMKLERLKSVSI------------L----- 441 (582)
Q Consensus 399 ---------------~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~------------l----- 441 (582)
....+++|+.++++.+... .........++.+.+........ +
T Consensus 351 L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 351 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp CCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTS
T ss_pred hhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhc
Confidence 1124567888877654431 11111222333333322211111 0
Q ss_pred ----cccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccc
Q 048810 442 ----LRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIG 517 (582)
Q Consensus 442 ----~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 517 (582)
..+......+++++.++++.+......+.. ...+++|++|++++|.....+... ....+++|+.|++++
T Consensus 431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~---~~~~~~L~~L~Ls~N~~~~~~~~~----~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQ 503 (635)
T ss_dssp EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT---TTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTT
T ss_pred cccccccccccccccccccccccccccccccccc---cccchhhhhhhhhhcccccccCch----hhhhccccCEEECCC
Confidence 001111111245556666655533333333 346788899998887654443322 456788999999998
Q ss_pred cccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCc
Q 048810 518 LANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 518 ~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
.+++.++... .+.+++|++|++++| +++.+++. .+..+++|+.|+++++.
T Consensus 504 -N~L~~l~~~~---f~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 504 -CQLEQLSPTA---FNSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp -SCCCEECTTT---TTTCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSC
T ss_pred -CccCCcChHH---HcCCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCc
Confidence 4677775543 457899999999998 78888764 45789999999999864
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.2e-21 Score=193.64 Aligned_cols=245 Identities=14% Similarity=0.106 Sum_probs=147.2
Q ss_pred cCcEEEEecCCCCc---CCCCCC-CCCCccEEEeec-cCccccccChHHhcCCCCccEEEcCCCCCC-CCChhhhcccCc
Q 048810 209 KDPIAISLPYRGDQ---VLPQRM-RCPRLGLFLLHT-IGLCSIQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLDRLINL 282 (582)
Q Consensus 209 ~~~~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~L~~L 282 (582)
.+++.++++++.+. .+|..+ .+++|++|++++ + .....+|.. |..+++|++|++++|.++ .+|..++.+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-cccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46777777777765 355444 666677777664 3 233344444 366666777777666665 466666666677
Q ss_pred cEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCC-CCCEEcccccccccccCcccccCCCcccEEEcC
Q 048810 283 QTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLR-RLQLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358 (582)
Q Consensus 283 ~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 358 (582)
++|++++|.++. |..++.+++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. ++.++ |+.|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 777776666663 556666666777777666666 6666666665 6666666664322244443 55555 6666666
Q ss_pred CCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceeccccee
Q 048810 359 NSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSV 438 (582)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~ 438 (582)
+|.+... .+..+..+++|+.|++++|.+...+..
T Consensus 206 ~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------------------- 239 (313)
T 1ogq_A 206 RNMLEGD--------ASVLFGSDKNTQKIHLAKNSLAFDLGK-------------------------------------- 239 (313)
T ss_dssp SSEEEEC--------CGGGCCTTSCCSEEECCSSEECCBGGG--------------------------------------
T ss_pred CCcccCc--------CCHHHhcCCCCCEEECCCCceeeecCc--------------------------------------
Confidence 6654433 344556666666666665544321110
Q ss_pred ehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccc
Q 048810 439 SILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGL 518 (582)
Q Consensus 439 ~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 518 (582)
+. .+++|++|++++|......+..+. .+++|++|++++|.-...+| ....+++|+.|++.+.
T Consensus 240 --------~~-~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~ip------~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 240 --------VG-LSKNLNGLDLRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEIP------QGGNLQRFDVSAYANN 301 (313)
T ss_dssp --------CC-CCTTCCEEECCSSCCEECCCGGGG---GCTTCCEEECCSSEEEEECC------CSTTGGGSCGGGTCSS
T ss_pred --------cc-ccCCCCEEECcCCcccCcCChHHh---cCcCCCEEECcCCcccccCC------CCccccccChHHhcCC
Confidence 11 136777888877775545555543 77888888888874322333 2356777888887775
Q ss_pred ccc
Q 048810 519 ANL 521 (582)
Q Consensus 519 ~~L 521 (582)
+.+
T Consensus 302 ~~l 304 (313)
T 1ogq_A 302 KCL 304 (313)
T ss_dssp SEE
T ss_pred CCc
Confidence 444
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.9e-21 Score=193.27 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=160.9
Q ss_pred hccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEE
Q 048810 207 IRKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTL 285 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L 285 (582)
...+++.|+++++.+..+|..+ .+++|++|+++++ ....+|..+ ..+++|++|++++|.++.+|..++.+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n--~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA--GLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS--CCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC--CccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 3468899999999998888765 7888888888887 333666554 77888888888888888888888888888888
Q ss_pred EcCCCCCCC--ccccC---------CCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccE
Q 048810 286 CLDGCRLKD--IAKVG---------QLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEE 354 (582)
Q Consensus 286 ~L~~~~l~~--~~~~~---------~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~ 354 (582)
++++|++.. |..++ .+++|++|++++|.++.+|..++++++|++|++++ +.+..+|+. ++.+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCE
Confidence 888876554 55544 38888888888888888888888888888888888 456677775 788888888
Q ss_pred EEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc-cCCcccccccccEEEEEeccccccccccccccccceec
Q 048810 355 LYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLE 433 (582)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~ 433 (582)
|++++|..... .+..++.+++|+.|++++|... .+
T Consensus 234 L~Ls~n~~~~~--------~p~~~~~l~~L~~L~L~~n~~~~~~------------------------------------ 269 (328)
T 4fcg_A 234 LDLRGCTALRN--------YPPIFGGRAPLKRLILKDCSNLLTL------------------------------------ 269 (328)
T ss_dssp EECTTCTTCCB--------CCCCTTCCCCCCEEECTTCTTCCBC------------------------------------
T ss_pred EECcCCcchhh--------hHHHhcCCCCCCEEECCCCCchhhc------------------------------------
Confidence 88888765444 4556667777777777655332 11
Q ss_pred ccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEee
Q 048810 434 RLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVES 488 (582)
Q Consensus 434 ~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 488 (582)
|.++.. +++|+.|+|++|...+.+|..+. .+++|+.+.+..
T Consensus 270 ----------p~~~~~-l~~L~~L~L~~n~~~~~iP~~l~---~L~~L~~l~l~~ 310 (328)
T 4fcg_A 270 ----------PLDIHR-LTQLEKLDLRGCVNLSRLPSLIA---QLPANCIILVPP 310 (328)
T ss_dssp ----------CTTGGG-CTTCCEEECTTCTTCCCCCGGGG---GSCTTCEEECCG
T ss_pred ----------chhhhc-CCCCCEEeCCCCCchhhccHHHh---hccCceEEeCCH
Confidence 222322 36777777777777676666644 677777776654
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=5.1e-21 Score=198.58 Aligned_cols=178 Identities=22% Similarity=0.182 Sum_probs=102.8
Q ss_pred ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810 208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL 287 (582)
Q Consensus 208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 287 (582)
+.+++.+++++|.+..+|.. .++|+.|+++++ ....++. ..++|++|++++|.++.+| .++++++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n--~l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNN--NLKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSS--CCSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCC--ccCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 35666777777766666543 356666666665 2222221 1256666666666666666 4666666666666
Q ss_pred CCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810 288 DGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK 366 (582)
Q Consensus 288 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (582)
++|+++. |.. ..+|++|++++|.++.+| .++.+++|++|++++ +.+..+|.. .++|++|++++|.+..
T Consensus 161 ~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~-N~l~~l~~~----~~~L~~L~l~~n~l~~-- 229 (454)
T 1jl5_A 161 DNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN-NSLKKLPDL----PLSLESIVAGNNILEE-- 229 (454)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCCCC----CTTCCEEECCSSCCSS--
T ss_pred CCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCC-CcCCcCCCC----cCcccEEECcCCcCCc--
Confidence 6666665 322 236666666666666665 466666666666666 344445431 2466666666664431
Q ss_pred ccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEecc
Q 048810 367 VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGE 415 (582)
Q Consensus 367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 415 (582)
+..++.+++|+.|++++|.+..+|.. .++|+.|+++.+.
T Consensus 230 --------lp~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 230 --------LPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNY 268 (454)
T ss_dssp --------CCCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSC
T ss_pred --------ccccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCc
Confidence 11355666666666666666655542 3556666665444
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2.2e-20 Score=193.74 Aligned_cols=311 Identities=16% Similarity=0.093 Sum_probs=203.8
Q ss_pred cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcC
Q 048810 209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLD 288 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~ 288 (582)
.++++++++++.+..+|.. .++|+.|+++++ ....+|. .+++|++|++++|.++.+|... ++|++|+++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n--~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~ 139 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL--PPHLESLVASCN--SLTELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVS 139 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSS--CCSSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECC
T ss_pred cCCCEEEecCCccccCCCC--cCCCCEEEccCC--cCCcccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECc
Confidence 5678999999999888873 479999999987 3444664 3589999999999998877532 689999999
Q ss_pred CCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccccc
Q 048810 289 GCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVE 368 (582)
Q Consensus 289 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~ 368 (582)
+|.++..+.++++++|++|++++|.++.+|.. ..+|++|++++ +.+..+|. ++.+++|++|++++|.+...
T Consensus 140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~-n~l~~l~~--~~~l~~L~~L~l~~N~l~~l--- 210 (454)
T 1jl5_A 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGN-NQLEELPE--LQNLPFLTAIYADNNSLKKL--- 210 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSSCCC--CTTCTTCCEEECCSSCCSSC---
T ss_pred CCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcC-CcCCcCcc--ccCCCCCCEEECCCCcCCcC---
Confidence 99999944799999999999999999998864 35999999999 46777874 89999999999999875432
Q ss_pred CCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHH
Q 048810 369 GGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMR 448 (582)
Q Consensus 369 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~ 448 (582)
+. ..++|+.|++++|.+..+|....+++|+.|+++.+.. .........++.+.+..+.-... |..
T Consensus 211 ------~~---~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~N~l~~l---~~~-- 275 (454)
T 1jl5_A 211 ------PD---LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDL---PEL-- 275 (454)
T ss_dssp ------CC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC-SSCCSCCTTCCEEECCSSCCSCC---CCC--
T ss_pred ------CC---CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcC-CcccccccccCEEECCCCccccc---Ccc--
Confidence 11 1258999999999999888644889999999987665 22223345667777665532222 322
Q ss_pred HhhhcccceeeccccCccccccc---cc----------CCCCC-CCCcEEEEeecCCceeeecccccccCCCCccccccc
Q 048810 449 MLLQRTEDLWLETLEGVPSVVHE---LD----------DGEGF-PRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLY 514 (582)
Q Consensus 449 ~~~~~L~~L~L~~~~~~~~~~~~---~~----------~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 514 (582)
+++|+.|++++|.. +.++.. +. .+..+ ++|++|++++|. +..++ ..+++|+.|+
T Consensus 276 --~~~L~~L~ls~N~l-~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp--------~~~~~L~~L~ 343 (454)
T 1jl5_A 276 --PQSLTFLDVSENIF-SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP--------ALPPRLERLI 343 (454)
T ss_dssp --CTTCCEEECCSSCC-SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEE
T ss_pred --cCcCCEEECcCCcc-CcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccccc--------ccCCcCCEEE
Confidence 36777777777653 222110 00 00012 345555555442 22221 2256777777
Q ss_pred ccccccccccccccccCcccCCCccEEEEecccCcccccCh-hHHhhh-------------hhcceeeeccCcch
Q 048810 515 LIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSF-SMAKNL-------------LWLQKVGVEECDEL 575 (582)
Q Consensus 515 l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~~~~l-------------~~L~~L~i~~C~~L 575 (582)
+++ ++++.++. .+++|+.|++++| ++..+|.. ..+.++ ++|+.|++++++--
T Consensus 344 L~~-N~l~~lp~-------~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 344 ASF-NHLAEVPE-------LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CCS-SCCSCCCC-------CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCC-Cccccccc-------hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 776 34554432 3577888888877 34442210 123344 77888888876543
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=4.4e-21 Score=189.43 Aligned_cols=128 Identities=22% Similarity=0.290 Sum_probs=62.7
Q ss_pred CccEEEcCCCCCC---CCChhhhcccCccEEEcCC-CCCCC--ccccCCCCCccEEEeeCCCCC-ccchhhcCCCCCCEE
Q 048810 258 GLKVLQFPGIGSS---SLPSSLDRLINLQTLCLDG-CRLKD--IAKVGQLKKLEVLSFRDSDIE-QLPLEIGQLRRLQLL 330 (582)
Q Consensus 258 ~Lr~L~l~~~~~~---~lp~~i~~L~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L 330 (582)
+++.|+++++.++ .+|..++++++|++|++++ |.+.. |..++++++|++|++++|.+. .+|..++++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555555555554 2455555555555555553 44443 444555555555555555554 445555555555555
Q ss_pred cccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCC-CccEEEEEeccc
Q 048810 331 DLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLS-KLTTLEIHVRYA 394 (582)
Q Consensus 331 ~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~ 394 (582)
++++|...+.+|.. ++.+++|++|++++|.+... .+..+..+. +|+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~--------~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA--------IPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE--------CCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc--------CCHHHhhhhhcCcEEECcCCee
Confidence 55553222233333 45555555555555544322 234444444 555555554443
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.2e-19 Score=194.05 Aligned_cols=260 Identities=18% Similarity=0.120 Sum_probs=201.4
Q ss_pred ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810 208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL 287 (582)
Q Consensus 208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 287 (582)
..+++.++++++.+..+|.... ++|+.|++++| ....+|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N--~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDN--NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSC--CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCCcEEEecCCCcCccChhhC-CCCcEEEecCC--CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 4568999999999999988665 89999999988 4556665 57899999999999999997 7789999999
Q ss_pred CCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810 288 DGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV 367 (582)
Q Consensus 288 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (582)
++|.++..+. .+.+|++|++++|.++.+|.. +++|++|++++| .++.+|. .+++|+.|++++|.+...
T Consensus 109 s~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l-- 176 (622)
T 3g06_A 109 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL-- 176 (622)
T ss_dssp CSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC--
T ss_pred cCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC--
Confidence 9999998433 678999999999999999874 589999999994 6777764 357899999999876443
Q ss_pred cCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchH
Q 048810 368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGM 447 (582)
Q Consensus 368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i 447 (582)
+ ..+++|+.|++++|.+..+|.. .++|+.|.+..+.. . .. |.
T Consensus 177 -------~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l-~--------------------~l---~~-- 218 (622)
T 3g06_A 177 -------P---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRL-T--------------------SL---PA-- 218 (622)
T ss_dssp -------C---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCC-S--------------------SC---CC--
T ss_pred -------c---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcc-c--------------------cc---CC--
Confidence 2 4568899999999998887764 46777777654432 0 00 21
Q ss_pred HHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccc
Q 048810 448 RMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCS 527 (582)
Q Consensus 448 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 527 (582)
.+++|+.|++++|. ++.++ ..+++|++|++++| .++.++ . .+++|+.|++++ ++++.+|..
T Consensus 219 --~~~~L~~L~Ls~N~-L~~lp------~~l~~L~~L~Ls~N-~L~~lp-------~-~~~~L~~L~Ls~-N~L~~lp~~ 279 (622)
T 3g06_A 219 --LPSGLKELIVSGNR-LTSLP------VLPSELKELMVSGN-RLTSLP-------M-LPSGLLSLSVYR-NQLTRLPES 279 (622)
T ss_dssp --CCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSS-CCSCCC-------C-CCTTCCEEECCS-SCCCSCCGG
T ss_pred --CCCCCCEEEccCCc-cCcCC------CCCCcCcEEECCCC-CCCcCC-------c-ccccCcEEeCCC-CCCCcCCHH
Confidence 13789999998875 44444 25789999999988 455554 1 568899999988 477777643
Q ss_pred cccCcccCCCccEEEEecccCccc
Q 048810 528 QLREDQSFSNLRIIEVEHCNKLKH 551 (582)
Q Consensus 528 ~~~~~~~~~~L~~L~l~~c~~L~~ 551 (582)
...+++|+.|++++|+ +..
T Consensus 280 ----l~~l~~L~~L~L~~N~-l~~ 298 (622)
T 3g06_A 280 ----LIHLSSETTVNLEGNP-LSE 298 (622)
T ss_dssp ----GGGSCTTCEEECCSCC-CCH
T ss_pred ----HhhccccCEEEecCCC-CCC
Confidence 5678999999999985 443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=189.34 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=195.2
Q ss_pred hhhHHHHHhhccCcEEEEecCCCCcCCCC--CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh
Q 048810 198 DLEKKMEETIRKDPIAISLPYRGDQVLPQ--RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 275 (582)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 275 (582)
..++..|.....++++|++++|.+..++. ...+++|+.|+++++ ....+++..|.++++|++|++++|.++.+|..
T Consensus 41 ~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 41 GSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN--GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred CCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC--ccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 34445555556799999999999988876 338999999999987 55567666679999999999999999998876
Q ss_pred -hhcccCccEEEcCCCCCCC-cc--ccCCCCCccEEEeeCC-CCCccc-hhhcCCCCCCEEcccccccccccCcccccCC
Q 048810 276 -LDRLINLQTLCLDGCRLKD-IA--KVGQLKKLEVLSFRDS-DIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKL 349 (582)
Q Consensus 276 -i~~L~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l 349 (582)
++.+++|++|++++|+++. +. .+..+++|++|++++| .+..++ ..++.+++|++|++++| .+..+++..++.+
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhcc
Confidence 8999999999999999998 44 6899999999999999 577764 56899999999999995 5666644558999
Q ss_pred CcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc-----ccccccEEEEEeccccccccccc
Q 048810 350 SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-----VSVELQRYKMFIGEARGRWFVKS 424 (582)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~ 424 (582)
++|++|++++|..... ....+..+++|+.|++++|.+..++... ....++.+++....
T Consensus 198 ~~L~~L~l~~n~l~~~--------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~--------- 260 (353)
T 2z80_A 198 QNVSHLILHMKQHILL--------LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK--------- 260 (353)
T ss_dssp SEEEEEEEECSCSTTH--------HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB---------
T ss_pred ccCCeecCCCCccccc--------hhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc---------
Confidence 9999999999875433 1223456899999999999888765331 23445555543222
Q ss_pred cccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810 425 ETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS 490 (582)
Q Consensus 425 ~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 490 (582)
+........ |.++.. +++|+.|++++|.. +.++..+ ++.+++|++|++++|+
T Consensus 261 -------l~~~~l~~l---~~~l~~-l~~L~~L~Ls~N~l-~~i~~~~--~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 261 -------ITDESLFQV---MKLLNQ-ISGLLELEFSRNQL-KSVPDGI--FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -------CCHHHHHHH---HHHHHT-CTTCCEEECCSSCC-CCCCTTT--TTTCTTCCEEECCSSC
T ss_pred -------ccCcchhhh---HHHHhc-ccCCCEEECCCCCC-CccCHHH--HhcCCCCCEEEeeCCC
Confidence 111111112 444544 37899999998864 4555443 3478999999998885
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=2.2e-20 Score=182.08 Aligned_cols=204 Identities=21% Similarity=0.269 Sum_probs=131.3
Q ss_pred hHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCC-CCCC-Chh
Q 048810 200 EKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIG-SSSL-PSS 275 (582)
Q Consensus 200 ~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~ 275 (582)
+..+|...+.++++++++++.+..++.. ..+++|+.|+++++ ....+....|..+++|++|++++|. ++.+ |..
T Consensus 23 l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 23 LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred cccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC--ccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 3334444456677777777777666542 26677777777765 3444444455677777777777775 6665 556
Q ss_pred hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810 276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL 352 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L 352 (582)
+..+++|++|++++|.++. +..+..+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|...+..+++|
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcccc
Confidence 6777777777777777666 35566777777777777777766654 56677777777777 45666666556677777
Q ss_pred cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEec
Q 048810 353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIG 414 (582)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 414 (582)
++|++++|.+... .+..+.++++|+.|++++|.+..++... .+++|+.|++..+
T Consensus 180 ~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 180 DRLLLHQNRVAHV--------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CEEECCCCccccc--------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 7777777665433 3455666777777777777766665442 5566666665433
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=6.8e-20 Score=190.13 Aligned_cols=240 Identities=20% Similarity=0.217 Sum_probs=183.2
Q ss_pred cEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCC
Q 048810 211 PIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDG 289 (582)
Q Consensus 211 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~ 289 (582)
.+.++..+..+..+|.... ++++.|+++++ ....++...|.++++|++|++++|.++.++ ..+.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHEN--QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSC--CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCC--cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4567777788888887653 68889999887 556666666789999999999999988755 6788899999999999
Q ss_pred CCCCC-c-cccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810 290 CRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK 366 (582)
Q Consensus 290 ~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (582)
|+++. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|+.+..++...+..+++|++|++++|.+..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-- 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence 99888 3 468889999999999999988776 578889999999999888888888778889999999999887542
Q ss_pred ccCCCccchhhccCCCCccEEEEEecccccCCcc-c-ccccccEEEEEeccccccccccccccccceecccceeehcccc
Q 048810 367 VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD-L-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN 444 (582)
Q Consensus 367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~ 444 (582)
+..+..+++|+.|++++|.+..++.. + .+++|+.|++..+.. ..+. +
T Consensus 200 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~~~~----~ 248 (440)
T 3zyj_A 200 --------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-------------------QVIE----R 248 (440)
T ss_dssp --------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-------------------CEEC----T
T ss_pred --------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce-------------------eEEC----h
Confidence 23577888999999999988876443 3 778888887754432 0000 1
Q ss_pred chHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810 445 PGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS 490 (582)
Q Consensus 445 ~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 490 (582)
..+.. +++|+.|+|++|... ..+... +..+++|+.|+|++++
T Consensus 249 ~~~~~-l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 249 NAFDN-LQSLVEINLAHNNLT-LLPHDL--FTPLHHLERIHLHHNP 290 (440)
T ss_dssp TSSTT-CTTCCEEECTTSCCC-CCCTTT--TSSCTTCCEEECCSSC
T ss_pred hhhcC-CCCCCEEECCCCCCC-ccChhH--hccccCCCEEEcCCCC
Confidence 22222 378999999988744 333332 3478999999998875
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=7.8e-20 Score=190.39 Aligned_cols=240 Identities=20% Similarity=0.179 Sum_probs=185.8
Q ss_pred cEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCC
Q 048810 211 PIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDG 289 (582)
Q Consensus 211 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~ 289 (582)
.+.++..+..+..+|.... ++++.|+++++ ....++...|.++++|++|++++|.++.++ ..+.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMEN--NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCC--cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4567777788888876553 68899999887 555666666789999999999999998855 6788999999999999
Q ss_pred CCCCC-c-cccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810 290 CRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK 366 (582)
Q Consensus 290 ~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (582)
|.++. + ..+..+++|++|++++|.+..+|. .+.++++|++|++++|+.++.++...+..+++|++|++++|.+..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-- 210 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-- 210 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--
Confidence 99888 4 458889999999999999998876 578899999999999888999988778899999999999887543
Q ss_pred ccCCCccchhhccCCCCccEEEEEecccccCCcc-c-ccccccEEEEEeccccccccccccccccceecccceeehcccc
Q 048810 367 VEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD-L-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRN 444 (582)
Q Consensus 367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~ 444 (582)
...+..+++|+.|++++|.+..++.. + .+++|+.|++..+.. ..+. +
T Consensus 211 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~~~~----~ 259 (452)
T 3zyi_A 211 --------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-------------------SLIE----R 259 (452)
T ss_dssp --------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-------------------CEEC----T
T ss_pred --------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC-------------------ceEC----H
Confidence 23577889999999999988877544 3 777888887754433 0000 2
Q ss_pred chHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810 445 PGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS 490 (582)
Q Consensus 445 ~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 490 (582)
..+.. +++|+.|+|++|.. +..+... ++.+++|++|+|++++
T Consensus 260 ~~~~~-l~~L~~L~L~~N~l-~~~~~~~--~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 260 NAFDG-LASLVELNLAHNNL-SSLPHDL--FTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTT-CTTCCEEECCSSCC-SCCCTTS--STTCTTCCEEECCSSC
T ss_pred HHhcC-CCCCCEEECCCCcC-CccChHH--hccccCCCEEEccCCC
Confidence 22333 37899999998864 4444332 3478999999998875
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=2.8e-20 Score=183.33 Aligned_cols=241 Identities=21% Similarity=0.153 Sum_probs=164.6
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC---ChhhhcccCccEEEcC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL---PSSLDRLINLQTLCLD 288 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~i~~L~~L~~L~L~ 288 (582)
+.++.+++.+..+|.... ++++.|+++++ ....++..+|.++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n--~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESN--KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSS--CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCC--ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 356777777777776443 67888888876 45567777778888888888888887654 5667778888888888
Q ss_pred CCCCCC-ccccCCCCCccEEEeeCCCCCccch--hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccc
Q 048810 289 GCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE 365 (582)
Q Consensus 289 ~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (582)
+|.+.. +..+..+++|++|++++|.+..++. .+..+++|++|++++| .+...++..++.+++|++|++++|.+...
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccc
Confidence 888777 6668888888888888888877764 5778888888888884 45555555577888888888888765431
Q ss_pred cccCCCccchhhccCCCCccEEEEEecccccCCc-cc-ccccccEEEEEeccccccccccccccccceecccceeehccc
Q 048810 366 KVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQ-DL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLR 443 (582)
Q Consensus 366 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~ 443 (582)
..+..+..+++|+.|++++|.+..++. .+ .+++|+.|+++.+.. .. +.
T Consensus 166 -------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~------------------~~---- 215 (306)
T 2z66_A 166 -------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FS------------------LD---- 215 (306)
T ss_dssp -------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SB------------------CC----
T ss_pred -------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-Cc------------------cC----
Confidence 134567778888888888887776533 33 566666666543332 00 00
Q ss_pred cchHHHhhhcccceeeccccCcccccccccCCCCCC-CCcEEEEeecC
Q 048810 444 NPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFP-RLKHLYVESCS 490 (582)
Q Consensus 444 ~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~ 490 (582)
+..+.. +++|+.|++++|......+..+ ..+| +|++|++++++
T Consensus 216 ~~~~~~-l~~L~~L~L~~N~l~~~~~~~~---~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 216 TFPYKC-LNSLQVLDYSLNHIMTSKKQEL---QHFPSSLAFLNLTQND 259 (306)
T ss_dssp SGGGTT-CTTCCEEECTTSCCCBCSSSSC---CCCCTTCCEEECTTCC
T ss_pred hhhccC-cccCCEeECCCCCCcccCHHHH---HhhhccCCEEEccCCC
Confidence 111222 3677888888776544444443 2554 78888887764
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=9.1e-21 Score=187.67 Aligned_cols=253 Identities=15% Similarity=0.105 Sum_probs=170.6
Q ss_pred ccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcC
Q 048810 245 SIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQ 323 (582)
Q Consensus 245 ~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~ 323 (582)
....+..++..+++|++|++++|.++.++ ..++.+++|++|++++|.++....+..+++|++|++++|.++.+|.
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~---- 97 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV---- 97 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----
Confidence 34455566777889999999999998865 6788999999999999998874348889999999999998887764
Q ss_pred CCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccccc
Q 048810 324 LRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVS 403 (582)
Q Consensus 324 l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 403 (582)
.++|++|++++ +.+..++. ..+++|++|++++|.+... ....++.+++|+.|++++|.+..++.
T Consensus 98 ~~~L~~L~l~~-n~l~~~~~---~~~~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 161 (317)
T 3o53_A 98 GPSIETLHAAN-NNISRVSC---SRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEIDTVNF---- 161 (317)
T ss_dssp CTTCCEEECCS-SCCSEEEE---CCCSSCEEEECCSSCCCSG--------GGBCTGGGSSEEEEECTTSCCCEEEG----
T ss_pred CCCcCEEECCC-CccCCcCc---cccCCCCEEECCCCCCCCc--------cchhhhccCCCCEEECCCCCCCcccH----
Confidence 48899999988 56666664 3477888899888876544 33456677888888888776654321
Q ss_pred ccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcE
Q 048810 404 VELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKH 483 (582)
Q Consensus 404 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~ 483 (582)
..+...+++|++|++++|.. +..+. ...+++|++
T Consensus 162 -----------------------------------------~~~~~~l~~L~~L~L~~N~l-~~~~~----~~~l~~L~~ 195 (317)
T 3o53_A 162 -----------------------------------------AELAASSDTLEHLNLQYNFI-YDVKG----QVVFAKLKT 195 (317)
T ss_dssp -----------------------------------------GGGGGGTTTCCEEECTTSCC-CEEEC----CCCCTTCCE
T ss_pred -----------------------------------------HHHhhccCcCCEEECCCCcC-ccccc----ccccccCCE
Confidence 11111135666777766653 33322 224677777
Q ss_pred EEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCc-ccccChhHHhhhh
Q 048810 484 LYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKL-KHLFSFSMAKNLL 562 (582)
Q Consensus 484 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~l~~~~~~~~l~ 562 (582)
|++++| .++.++. ....+++|+.|++++ ++++.++.. ...+++|+.|++++|+-. ..++ ..+..++
T Consensus 196 L~Ls~N-~l~~l~~-----~~~~l~~L~~L~L~~-N~l~~l~~~----~~~l~~L~~L~l~~N~~~~~~~~--~~~~~~~ 262 (317)
T 3o53_A 196 LDLSSN-KLAFMGP-----EFQSAAGVTWISLRN-NKLVLIEKA----LRFSQNLEHFDLRGNGFHCGTLR--DFFSKNQ 262 (317)
T ss_dssp EECCSS-CCCEECG-----GGGGGTTCSEEECTT-SCCCEECTT----CCCCTTCCEEECTTCCCBHHHHH--HHHHTCH
T ss_pred EECCCC-cCCcchh-----hhcccCcccEEECcC-CcccchhhH----hhcCCCCCEEEccCCCccCcCHH--HHHhccc
Confidence 777776 3444432 134567777777777 456655542 456777888888777433 1232 3556777
Q ss_pred hcceeeeccCcchH
Q 048810 563 WLQKVGVEECDELK 576 (582)
Q Consensus 563 ~L~~L~i~~C~~L~ 576 (582)
+|+.|++.+|+.++
T Consensus 263 ~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 263 RVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cceEEECCCchhcc
Confidence 77777777665554
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.8e-21 Score=189.69 Aligned_cols=269 Identities=13% Similarity=0.067 Sum_probs=183.3
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEE
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLS 308 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~ 308 (582)
.+++|+.|+++++ ....++...|..+++|++|++++|.++..++ +..+++|++|++++|.++..+ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGN--PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTS--CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred cCCCCCEEECcCC--ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEE
Confidence 3456667777665 4445555666888888888888888876654 788888888888888776622 237888888
Q ss_pred eeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhc-cCCCCccEE
Q 048810 309 FRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVEL-NGLSKLTTL 387 (582)
Q Consensus 309 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L 387 (582)
+++|.+..++. ..+++|++|++++ +.+..+++..++.+++|++|++++|.+... .+..+ ..+++|+.|
T Consensus 106 l~~n~l~~~~~--~~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 106 AANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL 174 (317)
T ss_dssp CCSSCCSEEEE--CCCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred CCCCccCCcCc--cccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCcc--------cHHHHhhccCcCCEE
Confidence 88888887765 3467888888888 456666665577788888888888876543 23444 367888888
Q ss_pred EEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCccc
Q 048810 388 EIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPS 467 (582)
Q Consensus 388 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~ 467 (582)
++++|.+..++....+++|+.|+++.+.. . .. ++.+.. +++|+.|++++|. ++.
T Consensus 175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l-------------------~--~l---~~~~~~-l~~L~~L~L~~N~-l~~ 228 (317)
T 3o53_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKL-------------------A--FM---GPEFQS-AAGVTWISLRNNK-LVL 228 (317)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCC-------------------C--EE---CGGGGG-GTTCSEEECTTSC-CCE
T ss_pred ECCCCcCcccccccccccCCEEECCCCcC-------------------C--cc---hhhhcc-cCcccEEECcCCc-ccc
Confidence 88888887776665677788887765443 0 11 333333 4899999999986 445
Q ss_pred ccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEeccc
Q 048810 468 VVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCN 547 (582)
Q Consensus 468 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~ 547 (582)
++..+ +.+++|+.|++++|+-..... ......+++|+.|++.++..++..... ....+.+....-..|.
T Consensus 229 l~~~~---~~l~~L~~L~l~~N~~~~~~~----~~~~~~~~~L~~l~l~~~~~l~~~~~~----~~~~~~~~~~~~~cc~ 297 (317)
T 3o53_A 229 IEKAL---RFSQNLEHFDLRGNGFHCGTL----RDFFSKNQRVQTVAKQTVKKLTGQNEE----ECTVPTLGHYGAYCCE 297 (317)
T ss_dssp ECTTC---CCCTTCCEEECTTCCCBHHHH----HHHHHTCHHHHHHHHHHHHHHHSSSSC----CCSSTTCEEETTEEEB
T ss_pred hhhHh---hcCCCCCEEEccCCCccCcCH----HHHHhccccceEEECCCchhccCCchh----ccCCCceecccceeec
Confidence 55554 488999999999986431111 113466889999999987777655322 2233445554455676
Q ss_pred Cccc
Q 048810 548 KLKH 551 (582)
Q Consensus 548 ~L~~ 551 (582)
.+..
T Consensus 298 ~l~~ 301 (317)
T 3o53_A 298 DLPA 301 (317)
T ss_dssp CCTT
T ss_pred cCCh
Confidence 6654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=5.8e-19 Score=183.80 Aligned_cols=240 Identities=17% Similarity=0.165 Sum_probs=170.7
Q ss_pred ccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEe
Q 048810 233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSF 309 (582)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l 309 (582)
.+.+++.+. ....+|..+ .+++++|++++|.++.+ |..++++++|++|++++|.++. +..+.++++|++|++
T Consensus 56 ~~~v~c~~~--~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRR--GLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSS--CCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCC--CcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 456666654 555677654 47899999999999885 5789999999999999999988 478999999999999
Q ss_pred eCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810 310 RDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388 (582)
Q Consensus 310 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 388 (582)
++|.++.+|.. +..+++|++|++++ +.+..+|...+..+++|++|++++|..... .....+.++++|+.|+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-------i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEY-------ISEGAFEGLFNLKYLN 202 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCE-------ECTTTTTTCTTCCEEE
T ss_pred CCCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccc-------cChhhccCCCCCCEEE
Confidence 99999988876 78899999999999 568888887789999999999998643322 1233578899999999
Q ss_pred EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810 389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV 468 (582)
Q Consensus 389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~ 468 (582)
+++|.+..+|....+++|+.|+++.+.. ..+. +..+.. +++|+.|++++|......
T Consensus 203 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-------------------~~~~----~~~~~~-l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 203 LGMCNIKDMPNLTPLVGLEELEMSGNHF-------------------PEIR----PGSFHG-LSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp CTTSCCSSCCCCTTCTTCCEEECTTSCC-------------------SEEC----GGGGTT-CTTCCEEECTTSCCCEEC
T ss_pred CCCCcccccccccccccccEEECcCCcC-------------------cccC----cccccC-ccCCCEEEeCCCcCceEC
Confidence 9999888776544666677666643332 0000 222322 266777777766543333
Q ss_pred cccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccc
Q 048810 469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIG 517 (582)
Q Consensus 469 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 517 (582)
+..+ +.+++|++|+|++| .++.++.. ....+++|+.|++.+
T Consensus 259 ~~~~---~~l~~L~~L~L~~N-~l~~~~~~----~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 259 RNAF---DGLASLVELNLAHN-NLSSLPHD----LFTPLRYLVELHLHH 299 (452)
T ss_dssp TTTT---TTCTTCCEEECCSS-CCSCCCTT----SSTTCTTCCEEECCS
T ss_pred HHHh---cCCCCCCEEECCCC-cCCccChH----HhccccCCCEEEccC
Confidence 3332 36677777777666 34444322 234456666666665
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=4.4e-19 Score=172.84 Aligned_cols=173 Identities=21% Similarity=0.252 Sum_probs=124.1
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC 290 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~ 290 (582)
+.++.+++.+..+|... .++++.|+++++ ....++...|..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n--~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCC--cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777777777543 467888888876 45556666667788888888888887775 567778888888888888
Q ss_pred C-CCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccccc
Q 048810 291 R-LKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEK 366 (582)
Q Consensus 291 ~-l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~ 366 (582)
+ +.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.++...++.+++|++|++++|.+...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 168 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSV- 168 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEE-
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCccccc-
Confidence 6 666 46677788888888888877766 44567788888888887 456667665567788888888877765433
Q ss_pred ccCCCccchhhccCCCCccEEEEEeccccc
Q 048810 367 VEGGSNASLVELNGLSKLTTLEIHVRYAEI 396 (582)
Q Consensus 367 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 396 (582)
....+..+++|+.|++++|.+..
T Consensus 169 -------~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 169 -------PERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCCE
T ss_pred -------CHHHhcCccccCEEECCCCcccc
Confidence 22346667777777777765543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=6.2e-19 Score=182.90 Aligned_cols=240 Identities=16% Similarity=0.177 Sum_probs=169.5
Q ss_pred ccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEe
Q 048810 233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSF 309 (582)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l 309 (582)
.+.++..+. ....+|..+ .+++++|++++|.++.++ ..+.++++|++|+|++|.++. +..+.++++|++|++
T Consensus 45 ~~~v~c~~~--~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRK--NLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSC--CCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCC--CcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 456666654 566777755 378999999999998865 689999999999999999988 578999999999999
Q ss_pred eCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810 310 RDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388 (582)
Q Consensus 310 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 388 (582)
++|+++.+|. .+..+++|++|++++ +.+..++...+..+++|++|++++|..... .....+.++++|+.|+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-------i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSY-------ISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCE-------ECTTTTTTCSSCCEEE
T ss_pred CCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcce-------eCcchhhcccccCeec
Confidence 9999998887 488999999999999 568888887789999999999998643322 1234578899999999
Q ss_pred EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810 389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV 468 (582)
Q Consensus 389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~ 468 (582)
+++|.+..+|....+++|+.|+++.+.. . .+. +..+.. +++|+.|+++++......
T Consensus 192 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~------------------~~~----~~~~~~-l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 192 LAMCNLREIPNLTPLIKLDELDLSGNHL-S------------------AIR----PGSFQG-LMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp CTTSCCSSCCCCTTCSSCCEEECTTSCC-C------------------EEC----TTTTTT-CTTCCEEECTTCCCCEEC
T ss_pred CCCCcCccccccCCCcccCEEECCCCcc-C------------------ccC----hhhhcc-CccCCEEECCCCceeEEC
Confidence 9999888877544666666666644332 0 000 122222 266667777666543333
Q ss_pred cccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccc
Q 048810 469 VHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIG 517 (582)
Q Consensus 469 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 517 (582)
+.. +..+++|++|+|++| .++.++.. ....+++|+.|++++
T Consensus 248 ~~~---~~~l~~L~~L~L~~N-~l~~~~~~----~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 248 RNA---FDNLQSLVEINLAHN-NLTLLPHD----LFTPLHHLERIHLHH 288 (440)
T ss_dssp TTS---STTCTTCCEEECTTS-CCCCCCTT----TTSSCTTCCEEECCS
T ss_pred hhh---hcCCCCCCEEECCCC-CCCccChh----HhccccCCCEEEcCC
Confidence 333 236666777777665 34443322 234456666666655
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.80 E-value=2.2e-19 Score=210.89 Aligned_cols=170 Identities=17% Similarity=0.253 Sum_probs=140.2
Q ss_pred CCcceEEccC-CCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhccccc
Q 048810 2 NSQKEIQIDV-LSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAK 80 (582)
Q Consensus 2 ~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~ 80 (582)
+....|++++ |+++|||+||++.++.. .+++.+++++|+++|+|+||||+++|+.|+.+. ..|+..++.+......
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhh
Confidence 4567899996 99999999999999632 344566899999999999999999999999776 4799999998766532
Q ss_pred ccc----chhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHH
Q 048810 81 EID----GMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKL 156 (582)
Q Consensus 81 ~~~----~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L 156 (582)
.+. ...+.+..++.+||+.||.+ .|.||+|||+||+++.|+++.++.+|.+++ + .+.+++++|
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~----~~~~~l~~L 418 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET--------E----EVEDILQEF 418 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------H----HHHHHHHHH
Confidence 221 12367999999999999998 899999999999999999999999997763 2 334578899
Q ss_pred HhccccccCCC--CccEEhhhHHHHHHHHHhcc
Q 048810 157 KSLCLLLDGDA--EDEVKMHDVIRVVAVSIAED 187 (582)
Q Consensus 157 ~~~~l~~~~~~--~~~~~mhdl~~~l~~~~~~~ 187 (582)
+++||++.... ..+|+|||++|++++..+.+
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 99999976532 33699999999999988664
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.9e-19 Score=177.37 Aligned_cols=207 Identities=19% Similarity=0.128 Sum_probs=168.8
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCCCC--CCCCccEEEeeccCccc-cccChHHhcCCCCccEEEcCCCCCCCCChh
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQRM--RCPRLGLFLLHTIGLCS-IQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 275 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 275 (582)
.++.+|...+.+++++++++|.+..++... .+++|+.|+++++.-.. ...+.. +..+++|++|++++|.++.+|..
T Consensus 18 ~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEE
T ss_pred CcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhh
Confidence 344455555678999999999999998753 89999999999872111 112344 45799999999999999999999
Q ss_pred hhcccCccEEEcCCCCCCC-c--cccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccc--cCcccccCC
Q 048810 276 LDRLINLQTLCLDGCRLKD-I--AKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEV--IAPNVISKL 349 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~-~--~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l 349 (582)
+..+++|++|++++|.++. + ..+..+++|++|++++|.+... |..+..+++|++|++++|. +.. +|.. ++.+
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l 174 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTEL 174 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTC
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-HhhC
Confidence 9999999999999999887 3 5789999999999999998854 5568899999999999954 443 5554 8999
Q ss_pred CcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEeccc
Q 048810 350 SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEA 416 (582)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 416 (582)
++|++|++++|.+... .+..+..+++|+.|++++|.+..++... .+++|+.|+++.+..
T Consensus 175 ~~L~~L~Ls~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQL--------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred cCCCEEECCCCCcCCc--------CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 9999999999976544 4567889999999999999998877643 778999998876554
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.6e-18 Score=164.89 Aligned_cols=194 Identities=19% Similarity=0.263 Sum_probs=162.5
Q ss_pred CcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh-hhcccCccEEEcC
Q 048810 210 DPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LDRLINLQTLCLD 288 (582)
Q Consensus 210 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L~~L~L~ 288 (582)
..+.++++++.+..+|.... ++++.|+++++ ....++...|..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSN--KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSS--CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCC--CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46789999999988887554 68999999987 55667776778999999999999999998865 4789999999999
Q ss_pred CCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccc
Q 048810 289 GCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWE 365 (582)
Q Consensus 289 ~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~ 365 (582)
+|.++. + ..+..+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|...++.+++|++|++++|.+...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 999988 3 5678899999999999999987765 68899999999999 578888887788999999999999876544
Q ss_pred cccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEecc
Q 048810 366 KVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGE 415 (582)
Q Consensus 366 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 415 (582)
....+.++++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 173 --------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 --------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 3345788999999999999999888764 67889988876554
No 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.78 E-value=5.7e-19 Score=191.03 Aligned_cols=144 Identities=19% Similarity=0.277 Sum_probs=119.9
Q ss_pred ceEEcc------CCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC--ChHHHHHHHHHHhc
Q 048810 5 KEIQID------VLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE--SLDTWKDVLRQLRS 76 (582)
Q Consensus 5 ~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~--~~~~W~~~l~~l~~ 76 (582)
.+|+++ +|+++|||+||+++.... ..+++.+| |+|+||||+++|+.|+++ +.++|+..
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence 367888 999999999999985332 23344554 999999999999999977 78889753
Q ss_pred cccccccchhhhHHHHHHHHHhhcCchhH-HHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHH
Q 048810 77 SYAKEIDGMEKNVYLSIKLSYDFLRSEEA-KSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGK 155 (582)
Q Consensus 77 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~l-k~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~ 155 (582)
....+..++.+||+.||++ . |.||+|||+||+++.|+++.++.+|+++|. ++ +.+++++
T Consensus 351 --------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~L~e 410 (1221)
T 1vt4_I 351 --------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVVVNK 410 (1221)
T ss_dssp --------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHHHHH
T ss_pred --------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HH----HHHHHHH
Confidence 1267999999999999998 8 999999999999999999999999999981 22 4457899
Q ss_pred HHhccccccCCCCccEEhhhHHHHHHH
Q 048810 156 LKSLCLLLDGDAEDEVKMHDVIRVVAV 182 (582)
Q Consensus 156 L~~~~l~~~~~~~~~~~mhdl~~~l~~ 182 (582)
|+++||++..+...+|+|||++++++.
T Consensus 411 LvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 411 LHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 999999987656678999999998653
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=2.7e-18 Score=167.23 Aligned_cols=196 Identities=21% Similarity=0.172 Sum_probs=168.4
Q ss_pred hccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEE
Q 048810 207 IRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLC 286 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~ 286 (582)
...+++.+++.++.+..+|.... ++++.|+++++ ....++...|..+++|++|++++|.++.+|.. +.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSEN--LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTS--CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCC--cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 34678999999999999987664 78999999998 45566666779999999999999999988764 8899999999
Q ss_pred cCCCCCCC-ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 287 LDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 287 L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
+++|.++. |..+..+++|++|++++|+++.+|. .+..+++|++|++++ +.++.+|++.+..+++|+.|++++|.+..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc
Confidence 99999998 7788999999999999999998874 588999999999999 57888988878899999999999997654
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccccCCccc-ccccccEEEEEecc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL-VSVELQRYKMFIGE 415 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 415 (582)
. ....+..+++|+.|++++|.+..+|..+ ...+|+.+.+..+.
T Consensus 163 l--------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 L--------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp C--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred c--------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 3 2344678999999999999999999887 67788888876544
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=3.1e-21 Score=201.84 Aligned_cols=354 Identities=14% Similarity=0.086 Sum_probs=194.7
Q ss_pred HhhccCcEEEEecCCCCcC-----CCCCC-CCCCccEEEeeccCccccccChHHhcCCC----CccEEEcCCCCCCC---
Q 048810 205 ETIRKDPIAISLPYRGDQV-----LPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGME----GLKVLQFPGIGSSS--- 271 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~----~Lr~L~l~~~~~~~--- 271 (582)
....++++++++++|.+.. ++... .+++|++|+++++ ......+..++..++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 3445678888888887752 23322 5678888888876 222222334445555 68888888888763
Q ss_pred --CChhhhcccCccEEEcCCCCCCC--cccc-----CCCCCccEEEeeCCCCCc-----cchhhcCCCCCCEEccccccc
Q 048810 272 --LPSSLDRLINLQTLCLDGCRLKD--IAKV-----GQLKKLEVLSFRDSDIEQ-----LPLEIGQLRRLQLLDLSNCWT 337 (582)
Q Consensus 272 --lp~~i~~L~~L~~L~L~~~~l~~--~~~~-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~ 337 (582)
+|..+..+++|++|++++|.+.. +..+ ...++|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND- 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence 56777888888888888888765 3222 235678888888887773 45566777888888888854
Q ss_pred ccccCccccc-----CCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCC-----ccc--cccc
Q 048810 338 LEVIAPNVIS-----KLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILP-----QDL--VSVE 405 (582)
Q Consensus 338 l~~lp~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~--~~~~ 405 (582)
++......+. ..++|++|++++|.+... .....+..+..+++|++|++++|.+.... ..+ .+++
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD----NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT----HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH----HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 4432221122 356888888888765432 00113445667788888888877665321 111 3677
Q ss_pred ccEEEEEeccccc-------cccccccccccceecccceeehccccchHHHh----hhcccceeeccccCccc----ccc
Q 048810 406 LQRYKMFIGEARG-------RWFVKSETSRLMKLERLKSVSILLRNPGMRML----LQRTEDLWLETLEGVPS----VVH 470 (582)
Q Consensus 406 L~~L~l~~~~~~~-------~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~----~~~L~~L~L~~~~~~~~----~~~ 470 (582)
|+.|+++.+.... ......+.++.+.+..+.--..- +..+... .++|++|++++|..... ++.
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH--HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 8888776554311 11222445555555544211100 1112221 14777777777763322 122
Q ss_pred cccCCCCCCCCcEEEEeecCCceeeecccccc-cCCCCccccccccccccccccccccccc-CcccCCCccEEEEecccC
Q 048810 471 ELDDGEGFPRLKHLYVESCSEILHIVGSVRRV-GCEVFPLLETLYLIGLANLETICCSQLR-EDQSFSNLRIIEVEHCNK 548 (582)
Q Consensus 471 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~~L~~L~l~~c~~ 548 (582)
. +..+++|++|++++|. +.......... .....++|++|++++| +++......++ ....+++|++|++++| .
T Consensus 336 ~---l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~ 409 (461)
T 1z7x_W 336 V---LAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-C 409 (461)
T ss_dssp H---HHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-S
T ss_pred H---HhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-C
Confidence 2 2256777777777763 22211000000 0112567777777774 34421100011 1345677777777777 3
Q ss_pred cccccChhHHhhh----hhcceeeeccC
Q 048810 549 LKHLFSFSMAKNL----LWLQKVGVEEC 572 (582)
Q Consensus 549 L~~l~~~~~~~~l----~~L~~L~i~~C 572 (582)
+.........+.+ ++|+.|.+.++
T Consensus 410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 410 LGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred CCHHHHHHHHHHhccCCcchhheeeccc
Confidence 4443222222222 24666666554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.1e-18 Score=182.81 Aligned_cols=235 Identities=16% Similarity=0.108 Sum_probs=156.9
Q ss_pred CCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccccc
Q 048810 257 EGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNC 335 (582)
Q Consensus 257 ~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 335 (582)
++|++|++++|.++.+| ..++.+++|++|+|++|.+++...++.+++|++|++++|.++.+|. .++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~- 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN- 108 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS-
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC-
Confidence 48899999999888864 6788889999999999988873338888999999999988887775 37888999888
Q ss_pred ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEecc
Q 048810 336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGE 415 (582)
Q Consensus 336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 415 (582)
+.+..++. ..+++|+.|++++|.+... .+..++.+++|+.|++++|.+...+
T Consensus 109 N~l~~~~~---~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~----------------- 160 (487)
T 3oja_A 109 NNISRVSC---SRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEIDTVN----------------- 160 (487)
T ss_dssp SCCCCEEE---CCCSSCEEEECCSSCCCSG--------GGBCGGGGSSEEEEECTTSCCCEEE-----------------
T ss_pred CcCCCCCc---cccCCCCEEECCCCCCCCC--------CchhhcCCCCCCEEECCCCCCCCcC-----------------
Confidence 45666664 3567888888888876544 3446677788888888777655321
Q ss_pred ccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceee
Q 048810 416 ARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHI 495 (582)
Q Consensus 416 ~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 495 (582)
|..+...+++|+.|+|++|.. +..+. ...+++|++|++++|. +..+
T Consensus 161 ----------------------------~~~l~~~l~~L~~L~Ls~N~l-~~~~~----~~~l~~L~~L~Ls~N~-l~~~ 206 (487)
T 3oja_A 161 ----------------------------FAELAASSDTLEHLNLQYNFI-YDVKG----QVVFAKLKTLDLSSNK-LAFM 206 (487)
T ss_dssp ----------------------------GGGGGGGTTTCCEEECTTSCC-CEEEC----CCCCTTCCEEECCSSC-CCEE
T ss_pred ----------------------------hHHHhhhCCcccEEecCCCcc-ccccc----cccCCCCCEEECCCCC-CCCC
Confidence 122221236677777776653 32222 2246777777777763 4444
Q ss_pred ecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCc-ccccChhHHhhhhhcceeeec
Q 048810 496 VGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKL-KHLFSFSMAKNLLWLQKVGVE 570 (582)
Q Consensus 496 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~l~~~~~~~~l~~L~~L~i~ 570 (582)
+. ....+++|+.|++++ +.+..+|.. .+.+++|+.|++++|+-. ..+| ..+..++.|+.+++.
T Consensus 207 ~~-----~~~~l~~L~~L~Ls~-N~l~~lp~~----l~~l~~L~~L~l~~N~l~c~~~~--~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 GP-----EFQSAAGVTWISLRN-NKLVLIEKA----LRFSQNLEHFDLRGNGFHCGTLR--DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CG-----GGGGGTTCSEEECTT-SCCCEECTT----CCCCTTCCEEECTTCCBCHHHHH--HHHTTCHHHHHHHHH
T ss_pred CH-----hHcCCCCccEEEecC-CcCcccchh----hccCCCCCEEEcCCCCCcCcchH--HHHHhCCCCcEEecc
Confidence 32 234567777777777 456655542 456777888888877533 1332 345566666666654
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1.1e-19 Score=179.54 Aligned_cols=245 Identities=13% Similarity=0.088 Sum_probs=159.4
Q ss_pred CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC--CChhhh-------cccCccEEEcCCCCCCC--cccc
Q 048810 230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLD-------RLINLQTLCLDGCRLKD--IAKV 298 (582)
Q Consensus 230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~-------~L~~L~~L~L~~~~l~~--~~~~ 298 (582)
.++|+.|++.++ .. .+|..+... |++|+++++.++. +|..+. ++++|++|++++|.+++ |..+
T Consensus 42 ~~~L~~l~l~~n--~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 42 GRSLEYLLKRVD--TE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEECTTHHHHCC--TT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CCCceeEeeccc--cc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345566666665 22 667666443 8888888888754 666665 68889999999998875 5555
Q ss_pred --CCCCCccEEEeeCCCCCccchhhcCC-----CCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCC
Q 048810 299 --GQLKKLEVLSFRDSDIEQLPLEIGQL-----RRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGS 371 (582)
Q Consensus 299 --~~l~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 371 (582)
+.+++|++|++++|.++.+|..++.+ ++|++|++++ +.+..+++..++.+++|++|++++|.....
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------ 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGE------ 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHH------
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcc------
Confidence 88899999999999888778777766 8899999988 567777765688899999999988864321
Q ss_pred ccchhhc--cCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHH
Q 048810 372 NASLVEL--NGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRM 449 (582)
Q Consensus 372 ~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~ 449 (582)
...+..+ +.+++|+.|++++|.+..++.. +..+..
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------------------------~~~~~~ 225 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGV-------------------------------------------CSALAA 225 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHH-------------------------------------------HHHHHH
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHH-------------------------------------------HHHHHh
Confidence 0123344 6778888888877765432110 112222
Q ss_pred hhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccc
Q 048810 450 LLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQL 529 (582)
Q Consensus 450 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 529 (582)
.+++|+.|++++|......+... ...+++|++|++++|. ++.++. ..+++|+.|++++ ++++.+|.
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~--~~~l~~L~~L~Ls~N~-l~~ip~-------~~~~~L~~L~Ls~-N~l~~~p~--- 291 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPS--CDWPSQLNSLNLSFTG-LKQVPK-------GLPAKLSVLDLSY-NRLDRNPS--- 291 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSC--CCCCTTCCEEECTTSC-CSSCCS-------SCCSEEEEEECCS-SCCCSCCC---
T ss_pred cCCCCCEEECCCCcCCcccchhh--hhhcCCCCEEECCCCc-cChhhh-------hccCCceEEECCC-CCCCCChh---
Confidence 23678888888776433332111 2356788888887763 344431 1126677777766 45555532
Q ss_pred cCcccCCCccEEEEecc
Q 048810 530 REDQSFSNLRIIEVEHC 546 (582)
Q Consensus 530 ~~~~~~~~L~~L~l~~c 546 (582)
...+++|++|+++++
T Consensus 292 --~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 292 --PDELPQVGNLSLKGN 306 (312)
T ss_dssp --TTTSCEEEEEECTTC
T ss_pred --HhhCCCCCEEeccCC
Confidence 345666777777665
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.1e-17 Score=164.61 Aligned_cols=193 Identities=16% Similarity=0.157 Sum_probs=165.4
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
.....+++.+++.++.+..++....+++|+.|+++++ ....++. +..+++|++|++++|.++.+| .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n--~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN--QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC--cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 3346789999999999988886668999999999987 4555655 689999999999999999886 6899999999
Q ss_pred EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
|++++|.++..+.+..+++|++|++++|.++.++. ++.+++|++|++++ +.+..+++ +..+++|++|++++|.+..
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 99999999996669999999999999999998887 88999999999999 46777776 7899999999999987643
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA 416 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 416 (582)
. ..+..+++|+.|++++|.+..++....+++|+.|++..+..
T Consensus 188 ~----------~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 188 I----------SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp C----------GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred C----------hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 3 23788999999999999998888644889999999876664
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=4.4e-19 Score=185.81 Aligned_cols=239 Identities=13% Similarity=0.042 Sum_probs=149.5
Q ss_pred CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEe
Q 048810 230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSF 309 (582)
Q Consensus 230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l 309 (582)
+++|+.|+++++ ....+++..|..+++|++|++++|.++..++ ++.+++|++|++++|.++..+ ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGN--PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSS--CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred CCCccEEEeeCC--cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEEC
Confidence 345666666655 3334444455677777777777777765544 677777777777777666522 1267777777
Q ss_pred eCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhcc-CCCCccEEE
Q 048810 310 RDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELN-GLSKLTTLE 388 (582)
Q Consensus 310 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~ 388 (582)
++|.+..+|. ..+++|++|++++ +.+..+++..++.+++|++|++++|.+... .+..+. .+++|+.|+
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHLN 175 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEEE
T ss_pred cCCcCCCCCc--cccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCc--------ChHHHhhhCCcccEEe
Confidence 7777776654 3456777777777 345555444466777777777777765443 344443 567777777
Q ss_pred EEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccc
Q 048810 389 IHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSV 468 (582)
Q Consensus 389 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~ 468 (582)
+++|.+..++....+++|+.|+++.+.. . .. |+.+.. +++|+.|++++|.. +.+
T Consensus 176 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l-------------------~--~~---~~~~~~-l~~L~~L~Ls~N~l-~~l 229 (487)
T 3oja_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKL-------------------A--FM---GPEFQS-AAGVTWISLRNNKL-VLI 229 (487)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSCC-------------------C--EE---CGGGGG-GTTCSEEECTTSCC-CEE
T ss_pred cCCCccccccccccCCCCCEEECCCCCC-------------------C--CC---CHhHcC-CCCccEEEecCCcC-ccc
Confidence 7777776665555666777776654443 0 01 333333 38899999998774 445
Q ss_pred cccccCCCCCCCCcEEEEeecCCc-eeeecccccccCCCCcccccccccccc
Q 048810 469 VHELDDGEGFPRLKHLYVESCSEI-LHIVGSVRRVGCEVFPLLETLYLIGLA 519 (582)
Q Consensus 469 ~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~~~ 519 (582)
|..+ +.+++|+.|++++|+.. ..++ .....++.|+.+.+..+.
T Consensus 230 p~~l---~~l~~L~~L~l~~N~l~c~~~~-----~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 230 EKAL---RFSQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp CTTC---CCCTTCCEEECTTCCBCHHHHH-----HHHTTCHHHHHHHHHHHH
T ss_pred chhh---ccCCCCCEEEcCCCCCcCcchH-----HHHHhCCCCcEEeccccc
Confidence 5543 47899999999988533 1111 124557778888776433
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=7e-18 Score=162.85 Aligned_cols=186 Identities=24% Similarity=0.310 Sum_probs=158.9
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-h
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-S 275 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~ 275 (582)
.+..+|...+..+++|++++|.+..++.. ..+++|+.|+++++ ....++..+|..+++|++|++++|.++.+|. .
T Consensus 27 ~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 104 (270)
T 2o6q_A 27 KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--KLQTLPAGIFKELKNLETLWVTDNKLQALPIGV 104 (270)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS--CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC--ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH
Confidence 34445555567899999999999888763 38999999999987 5667888888999999999999999999875 5
Q ss_pred hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810 276 LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL 352 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L 352 (582)
+..+++|++|++++|.++. +..++.+++|++|++++|.++.+|.. ++.+++|++|++++ +.+..+++..+..+++|
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCc
Confidence 6899999999999999998 45689999999999999999998876 78999999999999 57888888778899999
Q ss_pred cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810 353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE 395 (582)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 395 (582)
++|++++|.+... ....+..+++|+.|++++|.+.
T Consensus 184 ~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 184 KTLKLDNNQLKRV--------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCcCCcC--------CHHHhccccCCCEEEecCCCee
Confidence 9999999976543 2345778999999999988764
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=3.3e-18 Score=165.79 Aligned_cols=203 Identities=19% Similarity=0.217 Sum_probs=162.3
Q ss_pred HHHHhhccCcEEEEecCCCCcCCCC--CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhc
Q 048810 202 KMEETIRKDPIAISLPYRGDQVLPQ--RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDR 278 (582)
Q Consensus 202 ~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~ 278 (582)
..|...+.+++++++++|.+..++. ...+++|+.|+++++ ....++...|..+++|++|++++|.++.++ ..+..
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC--cCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 3444456789999999999987775 237899999999987 555677767789999999999999998865 67899
Q ss_pred ccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCc--cchhhcCCCCCCEEcccccccccccCcccccCCCccc-
Q 048810 279 LINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQ--LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE- 353 (582)
Q Consensus 279 L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~- 353 (582)
+++|++|++++|.+.. +..++.+++|++|++++|.+.. +|..++.+++|++|++++ +.++.++...+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTT
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhhccc
Confidence 9999999999999888 3468999999999999999886 688899999999999999 567777765566666666
Q ss_pred ---EEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEeccc
Q 048810 354 ---ELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGEA 416 (582)
Q Consensus 354 ---~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 416 (582)
.|++++|.+... ........+|+.|++++|.+..++... .+++|+.|++..+..
T Consensus 178 l~l~L~ls~n~l~~~---------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 178 LNLSLDLSLNPMNFI---------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCEEEECCSSCCCEE---------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cceeeecCCCccccc---------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 889988876543 233334458999999999999888765 688899888865543
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=7.3e-19 Score=189.84 Aligned_cols=151 Identities=14% Similarity=0.077 Sum_probs=77.1
Q ss_pred hccCcEEEEecCCCCcCCCC-----C-CCCCCccEEEeeccCcc--ccccChHHhcCCCCccEEEcCCCCCCCCChhhhc
Q 048810 207 IRKDPIAISLPYRGDQVLPQ-----R-MRCPRLGLFLLHTIGLC--SIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDR 278 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~~l~~-----~-~~~~~L~~L~l~~~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~ 278 (582)
..+++++|++++|.+..... . ..+++|+.|+++.+... .......++..+++|++|++++|.+..+|..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 34566666666665432211 0 14556666666554111 0011122334566666666666666556666666
Q ss_pred ccCccEEEcCCCCCC----C-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccccccccccc-CcccccCCCcc
Q 048810 279 LINLQTLCLDGCRLK----D-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVI-APNVISKLSRL 352 (582)
Q Consensus 279 L~~L~~L~L~~~~l~----~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~l-p~~~l~~l~~L 352 (582)
+++|++|+++.+... . +..+..+++|+.|+++++....+|..+..+++|++|++++|. +... ....+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCC
Confidence 666666666543211 1 344555566666666655555556555566666666666654 2221 11223556666
Q ss_pred cEEEcC
Q 048810 353 EELYMG 358 (582)
Q Consensus 353 ~~L~l~ 358 (582)
++|++.
T Consensus 321 ~~L~L~ 326 (592)
T 3ogk_B 321 EVLETR 326 (592)
T ss_dssp CEEEEE
T ss_pred CEEecc
Confidence 666665
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=6e-17 Score=173.24 Aligned_cols=242 Identities=17% Similarity=0.047 Sum_probs=171.8
Q ss_pred HHHHHhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhccc
Q 048810 201 KKMEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLI 280 (582)
Q Consensus 201 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~ 280 (582)
..+|...+.+++.|++++|.+..+|. .+++|++|++++| ....+|. .+++|++|++++|.++.+|. .+.
T Consensus 53 ~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N--~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~ 121 (622)
T 3g06_A 53 TTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGN--QLTSLPV----LPPGLLELSIFSNPLTHLPA---LPS 121 (622)
T ss_dssp SCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSC--CCSCCCC----CCTTCCEEEECSCCCCCCCC---CCT
T ss_pred CccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC--cCCcCCC----CCCCCCEEECcCCcCCCCCC---CCC
Confidence 33443344789999999999999888 6899999999998 4556665 67999999999999999987 678
Q ss_pred CccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCC
Q 048810 281 NLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGN 359 (582)
Q Consensus 281 ~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~ 359 (582)
+|++|++++|+++. |.. +++|++|++++|.++.+|. .+.+|+.|++++ +.++.+| ..+++|+.|++++
T Consensus 122 ~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 122 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELSVSD 190 (622)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEECCS
T ss_pred CcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEECCC
Confidence 89999999999988 443 4899999999999998886 457899999999 5678787 3578999999999
Q ss_pred CccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceee
Q 048810 360 SFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVS 439 (582)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 439 (582)
|.+... +. .+++|+.|++++|.+..+|.. +++|+.|+++.+.. .......+.++.+.+..+.-..
T Consensus 191 N~l~~l---------~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L-~~lp~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 191 NQLASL---------PT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRL-TSLPVLPSELKELMVSGNRLTS 255 (622)
T ss_dssp SCCSCC---------CC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSC
T ss_pred CCCCCC---------CC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCcc-CcCCCCCCcCcEEECCCCCCCc
Confidence 875432 11 247899999999998888764 47888888876654 2222233344444444432211
Q ss_pred hccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810 440 ILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS 490 (582)
Q Consensus 440 ~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 490 (582)
+ |. .+++|+.|++++|.. +.+|..+. .+++|+.|+|++|+
T Consensus 256 l---p~----~~~~L~~L~Ls~N~L-~~lp~~l~---~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 256 L---PM----LPSGLLSLSVYRNQL-TRLPESLI---HLSSETTVNLEGNP 295 (622)
T ss_dssp C---CC----CCTTCCEEECCSSCC-CSCCGGGG---GSCTTCEEECCSCC
T ss_pred C---Cc----ccccCcEEeCCCCCC-CcCCHHHh---hccccCEEEecCCC
Confidence 1 22 235555566655542 23333322 55556666665553
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=2.6e-19 Score=193.31 Aligned_cols=347 Identities=12% Similarity=0.044 Sum_probs=197.4
Q ss_pred CcEEEEecCCCC---cCCCCCC-CCCCccEEEeeccCccccc---cChHHhcCCCCccEEEcCCCCCCC-----CChhhh
Q 048810 210 DPIAISLPYRGD---QVLPQRM-RCPRLGLFLLHTIGLCSIQ---VSDHFFEGMEGLKVLQFPGIGSSS-----LPSSLD 277 (582)
Q Consensus 210 ~~~~l~l~~~~~---~~l~~~~-~~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~ 277 (582)
++++|++.+|.. ..++... .+++|+.|++.++ ..... ....++..+++|++|+++++.++. ++..+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 466666666541 0111111 4566666666665 11111 012234556667777776666652 334445
Q ss_pred cccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCC----CccchhhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810 278 RLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDI----EQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL 352 (582)
Q Consensus 278 ~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l----~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L 352 (582)
++++|++|++++|.+.. +..+..+++|++|++++... ...+..+..+++|++|++.+ .....+|.. +..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~l~~~-~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-MGPNEMPIL-FPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT-CCTTTGGGG-GGGGGGC
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc-cchhHHHHH-HhhcCCC
Confidence 66667777777666665 55566666777777664311 13334456666777777666 334445543 6678889
Q ss_pred cEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc--cCCccc-ccccccEEEEEe----------ccccc-
Q 048810 353 EELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE--ILPQDL-VSVELQRYKMFI----------GEARG- 418 (582)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~----------~~~~~- 418 (582)
++|++++|.+... .....+..+++|+.|++. +.+. .++... .+++|+.|++.. +....
T Consensus 296 ~~L~Ls~~~l~~~-------~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 296 RKLDLLYALLETE-------DHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp CEEEETTCCCCHH-------HHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred cEEecCCCcCCHH-------HHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 9999988874333 122346788999999998 3322 112112 578899999984 32211
Q ss_pred ----cccccccccccceecccceeehccccchHHHhhhcccceeecc---ccCccccccc--c-cCCCCCCCCcEEEEee
Q 048810 419 ----RWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLET---LEGVPSVVHE--L-DDGEGFPRLKHLYVES 488 (582)
Q Consensus 419 ----~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~---~~~~~~~~~~--~-~~~~~l~~L~~L~l~~ 488 (582)
......+.++.+.+... .+..- .+..+...+++|+.|++.+ +..++..+.. + .....+++|++|+++.
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~-~l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVS-DITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEES-CCCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHhhCccCeEEEeecC-CccHH-HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 11223566777766322 22110 0233444457899999974 3344432111 0 0023588999999987
Q ss_pred cCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChhHHhhhhhcceee
Q 048810 489 CSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVG 568 (582)
Q Consensus 489 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~ 568 (582)
|.. .+.+.........+++|+.|++++|. ++......+ ...+++|++|++++|+ ++.-.....+..+++|++|+
T Consensus 446 ~~~--~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 446 RQG--GLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEF--SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp CGG--GCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHH--HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEE
T ss_pred CCC--CccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHH--HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeE
Confidence 653 11111111123457899999998754 433211111 3568999999999997 65432224567899999999
Q ss_pred eccCcchH
Q 048810 569 VEECDELK 576 (582)
Q Consensus 569 i~~C~~L~ 576 (582)
+++|+ ++
T Consensus 520 ls~n~-it 526 (592)
T 3ogk_B 520 VQGYR-AS 526 (592)
T ss_dssp EESCB-CC
T ss_pred CcCCc-CC
Confidence 99998 44
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=2.2e-17 Score=160.80 Aligned_cols=169 Identities=20% Similarity=0.179 Sum_probs=125.5
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCCccccCCCCCccEE
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVL 307 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L 307 (582)
.+++++.+++.++ ....+|..+ .+.+++|++++|.++.+ |..+..+++|++|++++|.++..+..+.+++|++|
T Consensus 8 ~l~~l~~l~~~~~--~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKR--NLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTS--CCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccCCccEEECCCC--CCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 5677888888776 455666654 36788888888888775 45688888888888888888884444788888888
Q ss_pred EeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEE
Q 048810 308 SFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTL 387 (582)
Q Consensus 308 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 387 (582)
++++|.++.+|..+..+++|++|++++ +.++.+|++.+..+++|++|++++|.+... ....+..+++|+.|
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTL--------PPGLLTPTPKLEKL 153 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCC--------CTTTTTTCTTCCEE
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCcc--------ChhhcccccCCCEE
Confidence 888888888888888888888888888 567777766678888888888888866543 23446678888888
Q ss_pred EEEecccccCCccc--ccccccEEEE
Q 048810 388 EIHVRYAEILPQDL--VSVELQRYKM 411 (582)
Q Consensus 388 ~l~~~~~~~~~~~~--~~~~L~~L~l 411 (582)
++++|.+..+|... .+++|+.|++
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 88888777666543 3444444443
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=6.8e-18 Score=159.79 Aligned_cols=198 Identities=14% Similarity=0.190 Sum_probs=157.4
Q ss_pred HHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCC-CCCCCCC-hhhh
Q 048810 202 KMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPG-IGSSSLP-SSLD 277 (582)
Q Consensus 202 ~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~i~ 277 (582)
.+|. .+..++.+++++|.+..++.. ..+++|+.|+++++ .....++...|.++++|++|++++ |.++.+| ..+.
T Consensus 25 ~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 25 RIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp SCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 3344 556889999999999888763 37899999999987 226677777778999999999998 8888876 4678
Q ss_pred cccCccEEEcCCCCCCCccccCCCCCcc---EEEeeCC-CCCccchh-hcCCCCCC-EEcccccccccccCcccccCCCc
Q 048810 278 RLINLQTLCLDGCRLKDIAKVGQLKKLE---VLSFRDS-DIEQLPLE-IGQLRRLQ-LLDLSNCWTLEVIAPNVISKLSR 351 (582)
Q Consensus 278 ~L~~L~~L~L~~~~l~~~~~~~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~l~~lp~~~l~~l~~ 351 (582)
.+++|++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++ +.++.+|...+.. ++
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~~ 180 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-TK 180 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-CE
T ss_pred CCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-CC
Confidence 8999999999999988844488888887 9999999 89888765 78899999 999988 5677888775544 88
Q ss_pred ccEEEcCCCc-cccccccCCCccchhhccCC-CCccEEEEEecccccCCcccccccccEEEEE
Q 048810 352 LEELYMGNSF-KRWEKVEGGSNASLVELNGL-SKLTTLEIHVRYAEILPQDLVSVELQRYKMF 412 (582)
Q Consensus 352 L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 412 (582)
|++|++++|. +... ....+..+ ++|+.|++++|.+..+|.. .+++|+.|++.
T Consensus 181 L~~L~L~~n~~l~~i--------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVI--------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp EEEEECTTCTTCCEE--------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred CCEEEcCCCCCcccC--------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 9999999884 5433 23457778 8999999999998888776 67788887753
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=5.6e-17 Score=154.66 Aligned_cols=175 Identities=20% Similarity=0.265 Sum_probs=142.1
Q ss_pred cCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEc
Q 048810 209 KDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCL 287 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L 287 (582)
...++++++++.+..+|.... ++++.|+++++ ....++...|.++++|++|++++|.++.++. .+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQST--GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCC--CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 355788999999988887664 68899999887 4555666667889999999999999988654 5788999999999
Q ss_pred CCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 288 DGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 288 ~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
++|.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+|+..++.+++|++|++++|.+..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999888 35678899999999999999988876 57889999999998 57888887668889999999999887654
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAE 395 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 395 (582)
. ....+..+++|+.|++++|.+.
T Consensus 170 ~--------~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 V--------PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp C--------CTTTTTTCTTCCEEECCSCCBC
T ss_pred c--------CHHHHhCCCCCCEEEeeCCcee
Confidence 4 3346778888888888888765
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=2.9e-17 Score=159.11 Aligned_cols=143 Identities=18% Similarity=0.216 Sum_probs=79.6
Q ss_pred EecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCC
Q 048810 215 SLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLK 293 (582)
Q Consensus 215 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~ 293 (582)
+-.+..+..+|.... ++++.|+++++ ....++...|.++++|++|++++|.++.++. .+..+++|++|++++|.++
T Consensus 13 ~c~~~~l~~ip~~l~-~~l~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFYKIPDNLP-FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTC--CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCccccCCCCC-CCccEEECCCC--cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 334444555554332 35666666655 3444444445566666666666666655442 4566666666666666665
Q ss_pred C--ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccc--cCcccccCCCcccEEEcCCCcc
Q 048810 294 D--IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNSFK 362 (582)
Q Consensus 294 ~--~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~~~ 362 (582)
. +..+.++++|++|++++|.+..++. .++.+++|++|++++ +.+.. +|.. ++.+++|++|++++|.+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCC
Confidence 5 3455666666666666666665544 355666666666666 33433 3333 55566666666666544
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=3.9e-17 Score=157.71 Aligned_cols=175 Identities=21% Similarity=0.241 Sum_probs=94.0
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCcc
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQ 283 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~ 283 (582)
......++.+++.++.+..++....+++|+.|+++++ ....++ .+..+++|++|++++|.++.+|. .++.+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n--~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN--KLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS--CCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCC--CCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3345566777777776666555445566666666555 222222 23555666666666666555443 245556666
Q ss_pred EEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 284 TLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 284 ~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
+|++++|+++. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .++.+++..++.+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC
Confidence 66666665555 2 2355556666666666655555443 355556666666652 444555444455556666665555
Q ss_pred ccccccccCCCccchhhccCCCCccEEEEEec
Q 048810 361 FKRWEKVEGGSNASLVELNGLSKLTTLEIHVR 392 (582)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 392 (582)
.+... .+..+..+++|+.|++++|
T Consensus 192 ~l~~~--------~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 192 QLKSV--------PDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCSCC--------CTTTTTTCTTCCEEECCSS
T ss_pred cCCcc--------CHHHHhCCcCCCEEEccCC
Confidence 44322 1223445555555555544
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=1.9e-19 Score=188.14 Aligned_cols=347 Identities=17% Similarity=0.096 Sum_probs=229.4
Q ss_pred ccCcEEEEecCCCCcCCCC---CCCCCCccEEEeeccCcccc---ccChHHhcCCCCccEEEcCCCCCCC-CChhh-hcc
Q 048810 208 RKDPIAISLPYRGDQVLPQ---RMRCPRLGLFLLHTIGLCSI---QVSDHFFEGMEGLKVLQFPGIGSSS-LPSSL-DRL 279 (582)
Q Consensus 208 ~~~~~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i-~~L 279 (582)
+.++++++++++.+...+. ...+++|+.|+++++.-... .+ ...+..+++|++|++++|.++. .+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI-SSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHH-HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHH-HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 4578999999998854332 12688999999998831111 22 2445788999999999999865 22233 345
Q ss_pred c----CccEEEcCCCCCCC------ccccCCCCCccEEEeeCCCCCcc-chhh-----cCCCCCCEEcccccccccc---
Q 048810 280 I----NLQTLCLDGCRLKD------IAKVGQLKKLEVLSFRDSDIEQL-PLEI-----GQLRRLQLLDLSNCWTLEV--- 340 (582)
Q Consensus 280 ~----~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~~l~~--- 340 (582)
. +|++|++++|.++. +..+..+++|++|++++|.+... +..+ ...++|++|++++| .++.
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHH
Confidence 5 69999999999884 57789999999999999988732 2222 23568999999996 4443
Q ss_pred --cCcccccCCCcccEEEcCCCccccccccCCCccchhhcc-----CCCCccEEEEEecccccC-----Cccc-cccccc
Q 048810 341 --IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELN-----GLSKLTTLEIHVRYAEIL-----PQDL-VSVELQ 407 (582)
Q Consensus 341 --lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~-~~~~L~ 407 (582)
++. .+..+++|++|++++|.+... .+..+. ..++|+.|++++|.+... +..+ .+++|+
T Consensus 160 ~~l~~-~l~~~~~L~~L~L~~n~i~~~--------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 160 EPLAS-VLRAKPDFKELTVSNNDINEA--------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp HHHHH-HHHHCTTCCEEECCSSBCHHH--------HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred HHHHH-HHhhCCCCCEEECcCCCcchH--------HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 233 367789999999999876443 223332 367999999999988753 3333 678999
Q ss_pred EEEEEecccc--------ccccccccccccceecccceeeh----ccccchHHHhhhcccceeeccccCccccccccc--
Q 048810 408 RYKMFIGEAR--------GRWFVKSETSRLMKLERLKSVSI----LLRNPGMRMLLQRTEDLWLETLEGVPSVVHELD-- 473 (582)
Q Consensus 408 ~L~l~~~~~~--------~~~~~~~~~l~~l~l~~~~~~~~----l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~-- 473 (582)
.|+++.+... ..+....+.++.+.+..+.-... + +..+.. +++|++|++++|......+..+.
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l--~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL--CRVLRA-KESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH--HHHHHH-CTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH--HHHHhh-CCCcceEECCCCCCchHHHHHHHHH
Confidence 9999876541 11122456778888877632211 1 233333 48899999998864322221111
Q ss_pred CCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccC-c-ccCCCccEEEEecccCcc-
Q 048810 474 DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLRE-D-QSFSNLRIIEVEHCNKLK- 550 (582)
Q Consensus 474 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~-~-~~~~~L~~L~l~~c~~L~- 550 (582)
.....++|++|++++|. +..............+++|+.|+++++ .+.......+.+ . ...++|++|++++| +++
T Consensus 308 l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~ 384 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSD 384 (461)
T ss_dssp HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCCh
Confidence 01234799999999985 222100000112345689999999985 555443221110 1 12679999999999 566
Q ss_pred ----cccChhHHhhhhhcceeeeccCc
Q 048810 551 ----HLFSFSMAKNLLWLQKVGVEECD 573 (582)
Q Consensus 551 ----~l~~~~~~~~l~~L~~L~i~~C~ 573 (582)
.++ ..+..+++|++|++++|+
T Consensus 385 ~~~~~l~--~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 385 SSCSSLA--ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHH--HHHHHCCCCCEEECCSSS
T ss_pred hhHHHHH--HHHHhCCCccEEECCCCC
Confidence 444 356789999999999985
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=4.5e-17 Score=154.12 Aligned_cols=100 Identities=16% Similarity=0.255 Sum_probs=49.7
Q ss_pred CccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCC-CCC-c-cccCCCCCccEEEeeC-CCCCccch-hhcCCCCCCEEc
Q 048810 258 GLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCR-LKD-I-AKVGQLKKLEVLSFRD-SDIEQLPL-EIGQLRRLQLLD 331 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~-l~~-~-~~~~~l~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~ 331 (582)
.|++|++++|.++.+|. .++.+++|++|++++|+ ++. + ..+..+++|++|++++ |.++.+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554443 44455555555555554 444 2 2445555555555555 45554443 244555555555
Q ss_pred ccccccccccCcccccCCCccc---EEEcCCC
Q 048810 332 LSNCWTLEVIAPNVISKLSRLE---ELYMGNS 360 (582)
Q Consensus 332 l~~~~~l~~lp~~~l~~l~~L~---~L~l~~~ 360 (582)
+++ +.++.+|. ++.+++|+ +|++++|
T Consensus 112 l~~-n~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 112 IFN-TGLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEE-ECCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred CCC-CCCccccc--cccccccccccEEECCCC
Confidence 555 23444443 44455554 5555554
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.7e-16 Score=153.23 Aligned_cols=188 Identities=18% Similarity=0.225 Sum_probs=151.1
Q ss_pred EEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCC
Q 048810 214 ISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLK 293 (582)
Q Consensus 214 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~ 293 (582)
+.+..+.+........+++|+.|.+.++ ....++. +..+++|++|++++|.++.++ .++.+++|++|++++|.++
T Consensus 24 l~l~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 24 ANLKKKSVTDAVTQNELNSIDQIIANNS--DIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHTCSCTTSEECHHHHTTCCEEECTTS--CCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred HHhcCcccccccccccccceeeeeeCCC--Ccccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC
Confidence 3444455544444447888999999887 3444443 578999999999999998875 7889999999999999998
Q ss_pred C-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCC
Q 048810 294 D-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGG 370 (582)
Q Consensus 294 ~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 370 (582)
. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .++.+|+..++.+++|++|++++|.+...
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----- 172 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSL----- 172 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-----
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCcc-----
Confidence 8 3 4578999999999999999988766 688999999999994 67888877678999999999999976543
Q ss_pred CccchhhccCCCCccEEEEEecccccCCccc--ccccccEEEEEecc
Q 048810 371 SNASLVELNGLSKLTTLEIHVRYAEILPQDL--VSVELQRYKMFIGE 415 (582)
Q Consensus 371 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 415 (582)
....++.+++|+.|++++|.+..++... .+++|+.|++..+.
T Consensus 173 ---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 173 ---PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 3345688999999999999998887764 78899999987654
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.2e-16 Score=153.92 Aligned_cols=176 Identities=21% Similarity=0.274 Sum_probs=145.1
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
.....+++.+++++|.+..++....+++|+.|+++++ ....++. +..+++|++|++++|.++.+|. ++.+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n--~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN--KLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC--ccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 3446788999999999988877668899999999987 4445554 6889999999999999988764 889999999
Q ss_pred EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
|++++|.++.++.+..+++|++|++++|.++.+ ..++.+++|++|++++ +.+..+++ +..+++|++|++++|.+..
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCCC
Confidence 999999988877888999999999999998888 4688899999999998 46777776 7889999999999886543
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccccCCc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQ 399 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 399 (582)
...+..+++|+.|++++|.+...+.
T Consensus 193 ----------l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 193 ----------LRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ----------CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred ----------ChhhccCCCCCEEECcCCcccCCcc
Confidence 2457888999999999887765443
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=1e-18 Score=188.71 Aligned_cols=348 Identities=14% Similarity=0.039 Sum_probs=188.9
Q ss_pred hccCcEEEEecCCCCcCC-CCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-----CChhhhc
Q 048810 207 IRKDPIAISLPYRGDQVL-PQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-----LPSSLDR 278 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~~l-~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~ 278 (582)
...++++++++++.+... ...+ .+++|+.|++.++..........++..+++|++|++++|.++. ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 345777777777765321 1111 4677888888766211111123444567788888888777544 2222335
Q ss_pred ccCccEEEcCCCC--CCC--c-cccCCCCCccEEEeeCC-CCCccchhhcCCCCCCEEcccccc----------------
Q 048810 279 LINLQTLCLDGCR--LKD--I-AKVGQLKKLEVLSFRDS-DIEQLPLEIGQLRRLQLLDLSNCW---------------- 336 (582)
Q Consensus 279 L~~L~~L~L~~~~--l~~--~-~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~---------------- 336 (582)
+++|++|++++|. +.. + ..+..+++|++|++++| .+..+|..+..+++|++|++..|.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 6678888887775 221 1 22344677888888777 455666666677777777654331
Q ss_pred ---cc-----------cccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccccc--CCcc
Q 048810 337 ---TL-----------EVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEI--LPQD 400 (582)
Q Consensus 337 ---~l-----------~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~ 400 (582)
.+ ..++. .+..+++|++|++++|.+... .....+..+++|++|+++++ +.. ++..
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~-------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQSY-------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCCCHH-------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred cCCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCCCHH-------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 11 11222 123567888888888763322 12233567888888888876 221 1111
Q ss_pred c-ccccccEEEEEecc--------ccc-----cccccccccccceecccceeehccccchHHHhhhcccceeec-----c
Q 048810 401 L-VSVELQRYKMFIGE--------ARG-----RWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLE-----T 461 (582)
Q Consensus 401 ~-~~~~L~~L~l~~~~--------~~~-----~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~-----~ 461 (582)
. .+++|+.|++..+. ... ......+.++.+.+.. ..+... ....+...+++|+.|++. +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~-~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNA-ALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHH-HHHHHHHHCTTCCEEEEEESSTTC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHH-HHHHHHhhCCCcceeEeecccCCC
Confidence 1 46788888885421 100 0111234555553322 122110 012233335788888887 3
Q ss_pred ccCccccccc--cc-CCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCc
Q 048810 462 LEGVPSVVHE--LD-DGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNL 538 (582)
Q Consensus 462 ~~~~~~~~~~--~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L 538 (582)
|..++..+.. +. .+..+++|++|++++ .+.. .........+++|+.|++++|. ++......+ ...+++|
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~---~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l--~~~~~~L 483 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD---KVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHV--LSGCDSL 483 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH---HHHHHHHHHCTTCCEEEEESCC-SSHHHHHHH--HHHCTTC
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC--cccH---HHHHHHHHhchhccEeeccCCC-CcHHHHHHH--HhcCCCc
Confidence 4444422210 00 023577888888855 2221 1000011236788888888754 322211111 1457899
Q ss_pred cEEEEecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810 539 RIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE 574 (582)
Q Consensus 539 ~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 574 (582)
++|++++|+- +.......+..+++|++|++++|+.
T Consensus 484 ~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 484 RKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999999864 4332223445688999999999976
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=5.1e-17 Score=160.28 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=18.5
Q ss_pred hcccceeeccccCcccccccccCCCCCCCCcEEEEeecC
Q 048810 452 QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCS 490 (582)
Q Consensus 452 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 490 (582)
++|++|++++|..... +. + ..+++|++|++++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~---~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-P---DELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-T---TTSCEEEEEECTTCT
T ss_pred CCceEEECCCCCCCCC-hh-H---hhCCCCCEEeccCCC
Confidence 4556666666655443 22 2 256666666666653
No 88
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=171.14 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=132.2
Q ss_pred ceEEc---cCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHHhcccccc
Q 048810 5 KEIQI---DVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNESLDTWKDVLRQLRSSYAKE 81 (582)
Q Consensus 5 ~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~ 81 (582)
.+|++ ++|+.+||++||.+.++.. .....+.+.+|+++|+|+||||+.+|+.|+.+. ..|+.+++.+.......
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHH
Confidence 45666 4899999999999999742 233356889999999999999999999999763 37999999987654321
Q ss_pred c----cchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHHHHHHHHH
Q 048810 82 I----DGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVHTLIGKLK 157 (582)
Q Consensus 82 ~----~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~~L~ 157 (582)
+ ......+..++..||+.||++ .|.||+++|+||+++.|+.+.++..|.+++ ++ +.+++++|+
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~----~~~~l~~L~ 419 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------EE----VEDILQEFV 419 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HH----HHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------HH----HHHHHHHHH
Confidence 1 112367899999999999998 899999999999999999999999996642 22 345788899
Q ss_pred hccccccC--CCCccEEhhhHHHHHHHHHh
Q 048810 158 SLCLLLDG--DAEDEVKMHDVIRVVAVSIA 185 (582)
Q Consensus 158 ~~~l~~~~--~~~~~~~mhdl~~~l~~~~~ 185 (582)
++|+++.. +....|+||+++++++....
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999754 23457999999999998773
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=5.1e-16 Score=152.61 Aligned_cols=177 Identities=20% Similarity=0.227 Sum_probs=154.9
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
.....+++.|++++|.+..++....+++|+.|+++++ ....++ .+..+++|++|++++|.++.+|. +..+++|++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n--~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN--PLKNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC--CCSCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCC--cCCCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence 5567899999999999988888668999999999998 344444 36899999999999999999875 999999999
Q ss_pred EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
|++++|.++..+.++.+++|++|++++|.++.++. +..+++|++|++++ +.+..+++ +..+++|++|++++|.+..
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD-NKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC-CccCcChh--hcCCCCCCEEEccCCccCc
Confidence 99999999995559999999999999999999887 99999999999999 56788876 7899999999999997654
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccccCCcc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD 400 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 400 (582)
. ..+..+++|+.|++++|.+...|..
T Consensus 210 ~----------~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 210 V----------SPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp C----------GGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred c----------ccccCCCCCCEEEccCCeeecCCee
Confidence 3 2488999999999999998776654
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=3e-18 Score=185.10 Aligned_cols=357 Identities=15% Similarity=0.084 Sum_probs=212.6
Q ss_pred hccCcEEEEecCCCC-cCC---CCC-------------CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCC-C
Q 048810 207 IRKDPIAISLPYRGD-QVL---PQR-------------MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGI-G 268 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~-~~l---~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~ 268 (582)
...+++.+++.++.. ..+ |.. ..+++|+.|+++++ ......+..+...+++|++|++++| .
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 345688888887642 111 111 15789999999987 3333333444346899999999998 5
Q ss_pred CCC--CChhhhcccCccEEEcCCCCCCC--cccc----CCCCCccEEEeeCCC--CC--ccchhhcCCCCCCEEcccccc
Q 048810 269 SSS--LPSSLDRLINLQTLCLDGCRLKD--IAKV----GQLKKLEVLSFRDSD--IE--QLPLEIGQLRRLQLLDLSNCW 336 (582)
Q Consensus 269 ~~~--lp~~i~~L~~L~~L~L~~~~l~~--~~~~----~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~ 336 (582)
++. ++..+..+++|++|++++|.+++ +..+ ..+++|++|++++|. +. .++.-+..+++|++|++++|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 544 56666689999999999998765 3333 367899999999986 32 334445668999999999987
Q ss_pred cccccCcccccCCCcccEEEcCCCcccc--c-------------------ccc-CCCccchhhccCCCCccEEEEEeccc
Q 048810 337 TLEVIAPNVISKLSRLEELYMGNSFKRW--E-------------------KVE-GGSNASLVELNGLSKLTTLEIHVRYA 394 (582)
Q Consensus 337 ~l~~lp~~~l~~l~~L~~L~l~~~~~~~--~-------------------~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~ 394 (582)
.++.++.. +..+++|++|++..+.... . ... .........+..+++|++|++++|.+
T Consensus 223 ~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 223 PLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp CHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred cHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 77776654 7889999999876553100 0 000 00111222233567788888877764
Q ss_pred ccC--Cccc-ccccccEEEEEeccc---cccccccccccccceecc--------cceeehccccchHHHhhhcccceeec
Q 048810 395 EIL--PQDL-VSVELQRYKMFIGEA---RGRWFVKSETSRLMKLER--------LKSVSILLRNPGMRMLLQRTEDLWLE 460 (582)
Q Consensus 395 ~~~--~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~l~~l~l~~--------~~~~~~l~~~~~i~~~~~~L~~L~L~ 460 (582)
... ...+ .+++|+.|.+..+-. ........+.++.+.+.. +..+... ....+...+++|+.|.+.
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~-~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH-HHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH-HHHHHHHhchhHHHHHHh
Confidence 321 1111 567788888775521 011122345566666632 1122110 011122224778888554
Q ss_pred cccCcccc-cccccCCCCCCCCcEEEEe-----ecCCceeeeccc-ccccCCCCcccccccccccccccccccccccCcc
Q 048810 461 TLEGVPSV-VHELDDGEGFPRLKHLYVE-----SCSEILHIVGSV-RRVGCEVFPLLETLYLIGLANLETICCSQLREDQ 533 (582)
Q Consensus 461 ~~~~~~~~-~~~~~~~~~l~~L~~L~l~-----~~~~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 533 (582)
.+. ++.. ...+ ...+|+|++|++. +|..++..+... .......+++|+.|++++ ++.......+ ..
T Consensus 381 ~~~-l~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l--~~ 453 (594)
T 2p1m_B 381 CRQ-MTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI--GT 453 (594)
T ss_dssp ESC-CCHHHHHHH--HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH--HH
T ss_pred cCC-cCHHHHHHH--HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH--HH
Confidence 433 3322 1111 1247888999888 455554332110 000134567888888865 4433221111 12
Q ss_pred cCCCccEEEEecccCcccccChhHHhhhhhcceeeeccCcc
Q 048810 534 SFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVGVEECDE 574 (582)
Q Consensus 534 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 574 (582)
.+++|+.|++++|. ++..........+++|++|+|++|+.
T Consensus 454 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 454 YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred hchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 37899999999985 54432222346789999999999986
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=2.7e-16 Score=157.75 Aligned_cols=236 Identities=14% Similarity=0.095 Sum_probs=146.6
Q ss_pred cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCC-ccchh-hcCCCCCCEEccccc
Q 048810 260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIE-QLPLE-IGQLRRLQLLDLSNC 335 (582)
Q Consensus 260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~-~lp~~-i~~l~~L~~L~l~~~ 335 (582)
++++.+++.++++|..+. .++++|+|++|+++. + ..+.++++|++|++++|.+. .+|.. +.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 567788888888887663 578888888888887 4 45788888888888888764 45543 567777777666555
Q ss_pred ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe-cccccCCccc--cc-ccccEEEE
Q 048810 336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV-RYAEILPQDL--VS-VELQRYKM 411 (582)
Q Consensus 336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~--~~-~~L~~L~l 411 (582)
+.+..++++.+..+++|++|++++|.+... ....+....++..|++.. +.+..++... .+ ..++.|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~--------~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHL--------PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSC--------CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred CcccccCchhhhhccccccccccccccccC--------Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 778888777677888888888877765332 112223344566666653 3455444432 11 23444443
Q ss_pred EeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCC
Q 048810 412 FIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSE 491 (582)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 491 (582)
+.+.. -.+ +..+.. ..+|++|.+.++..++.++... ++.+++|++|+++++ .
T Consensus 162 ~~N~i---------------------~~i---~~~~f~-~~~L~~l~l~~~n~l~~i~~~~--f~~l~~L~~LdLs~N-~ 213 (350)
T 4ay9_X 162 NKNGI---------------------QEI---HNSAFN-GTQLDELNLSDNNNLEELPNDV--FHGASGPVILDISRT-R 213 (350)
T ss_dssp CSSCC---------------------CEE---CTTSST-TEEEEEEECTTCTTCCCCCTTT--TTTEECCSEEECTTS-C
T ss_pred ccccc---------------------cCC---Chhhcc-ccchhHHhhccCCcccCCCHHH--hccCcccchhhcCCC-C
Confidence 32221 011 222211 2567777777666666665432 346777777777776 4
Q ss_pred ceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEec
Q 048810 492 ILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEH 545 (582)
Q Consensus 492 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~ 545 (582)
++.++ ...|.+|+.|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 214 l~~lp-------~~~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 214 IHSLP-------SYGLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCC-------SSSCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred cCccC-------hhhhccchHhhhccCCCcCcCCC-----chhCcChhhCcCCC
Confidence 55553 34566777777777777766653 45677777777754
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=3.6e-16 Score=152.33 Aligned_cols=182 Identities=22% Similarity=0.243 Sum_probs=152.8
Q ss_pred ecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCCc
Q 048810 216 LPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKDI 295 (582)
Q Consensus 216 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~~ 295 (582)
+..+.+........+++|+.|+++++ ....++. +..+++|++|++++|.++.++. ++.+++|++|++++|.++.+
T Consensus 31 l~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELNSIDQIIANNS--DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp TTCSCTTSEECHHHHHTCCEEECTTS--CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred hcCCCcccccchhhcCcccEEEccCC--CcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC
Confidence 44444444433446889999999987 4445543 5889999999999999999887 99999999999999999997
Q ss_pred cccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccch
Q 048810 296 AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASL 375 (582)
Q Consensus 296 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (582)
+.+..+++|++|++++|.++.++ .+..+++|++|++++ +.+..++. ++.+++|++|++++|.+... .
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~~---------~ 172 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDI---------V 172 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCCC---------G
T ss_pred hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCccccc---------h
Confidence 78999999999999999999885 589999999999999 56777743 89999999999999976443 2
Q ss_pred hhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc
Q 048810 376 VELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA 416 (582)
Q Consensus 376 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 416 (582)
.+..+++|+.|++++|.+..++....+++|+.|++..+..
T Consensus 173 -~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 173 -PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred -hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 2889999999999999999887655889999999987654
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=4.4e-17 Score=162.68 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=125.6
Q ss_pred ccEEEeeccCccccccChHHhcCC--CCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC---ccccCCCCCccEE
Q 048810 233 LGLFLLHTIGLCSIQVSDHFFEGM--EGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD---IAKVGQLKKLEVL 307 (582)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~~~l--~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~---~~~~~~l~~L~~L 307 (582)
++.++++++ . +.+..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. +..+..+++|++|
T Consensus 49 ~~~l~l~~~--~---~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGK--N---LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTC--B---CCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccc--c---CCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 556666654 1 113334444 66777777777766655556666777777777776654 3456666777777
Q ss_pred EeeCCCCC-ccchhhcCCCCCCEEcccccccccc--cCcccccCCCcccEEEcCCC-ccccccccCCCccchhhccCCC-
Q 048810 308 SFRDSDIE-QLPLEIGQLRRLQLLDLSNCWTLEV--IAPNVISKLSRLEELYMGNS-FKRWEKVEGGSNASLVELNGLS- 382 (582)
Q Consensus 308 ~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~- 382 (582)
++++|.+. ..|..++.+++|++|++++|..++. ++.. +..+++|++|++++| .+... .....+..++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~-------~~~~~~~~l~~ 195 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK-------HVQVAVAHVSE 195 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH-------HHHHHHHHSCT
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH-------HHHHHHHhccc
Confidence 77776665 4555666667777777776544442 3332 556666666666666 33221 1233345555
Q ss_pred CccEEEEEecccccCCcccccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccc
Q 048810 383 KLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETL 462 (582)
Q Consensus 383 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~ 462 (582)
+|++|++++|... . . .-.. +..+.. +++|+.|++++|
T Consensus 196 ~L~~L~l~~~~~~--------------------~----------------~---~~~l---~~~~~~-~~~L~~L~l~~~ 232 (336)
T 2ast_B 196 TITQLNLSGYRKN--------------------L----------------Q---KSDL---STLVRR-CPNLVHLDLSDS 232 (336)
T ss_dssp TCCEEECCSCGGG--------------------S----------------C---HHHH---HHHHHH-CTTCSEEECTTC
T ss_pred CCCEEEeCCCccc--------------------C----------------C---HHHH---HHHHhh-CCCCCEEeCCCC
Confidence 5555555544210 0 0 0000 222233 478888888888
Q ss_pred cCcc-cccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccc
Q 048810 463 EGVP-SVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGL 518 (582)
Q Consensus 463 ~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 518 (582)
..++ ..+.. ++.+++|++|++++|..+.. .. ......+++|+.|++++|
T Consensus 233 ~~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~---~~-~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 233 VMLKNDCFQE---FFQLNYLQHLSLSRCYDIIP---ET-LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCGGGGGG---GGGCTTCCEEECTTCTTCCG---GG-GGGGGGCTTCCEEECTTS
T ss_pred CcCCHHHHHH---HhCCCCCCEeeCCCCCCCCH---HH-HHHHhcCCCCCEEeccCc
Confidence 7443 23333 34778888888888853221 10 112345777777777776
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=6.3e-16 Score=147.31 Aligned_cols=163 Identities=22% Similarity=0.291 Sum_probs=140.3
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCCC--CCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hh
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQR--MRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SS 275 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~ 275 (582)
.+..+|...+..++.|++++|.+..++.. ..+++|+.|+++++ ....++...|..+++|++|++++|.++.+| ..
T Consensus 25 ~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 102 (251)
T 3m19_A 25 SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN--QLQTLSAGVFDDLTELGTLGLANNQLASLPLGV 102 (251)
T ss_dssp CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC--cCCccCHhHhccCCcCCEEECCCCcccccChhH
Confidence 44455555567899999999999887763 38999999999997 555677777899999999999999999977 45
Q ss_pred hhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcc
Q 048810 276 LDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL 352 (582)
Q Consensus 276 i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L 352 (582)
+..+++|++|++++|.++. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++ +.+..+|+..+..+++|
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCC
Confidence 7899999999999999998 4 447899999999999999999887 588999999999999 57888888778999999
Q ss_pred cEEEcCCCcccc
Q 048810 353 EELYMGNSFKRW 364 (582)
Q Consensus 353 ~~L~l~~~~~~~ 364 (582)
+.|++++|.+..
T Consensus 182 ~~L~l~~N~~~c 193 (251)
T 3m19_A 182 QTITLFGNQFDC 193 (251)
T ss_dssp CEEECCSCCBCT
T ss_pred CEEEeeCCceeC
Confidence 999999997643
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=7.8e-16 Score=154.34 Aligned_cols=236 Identities=13% Similarity=0.072 Sum_probs=171.5
Q ss_pred cEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC-c--cccCCCCCccE-EE
Q 048810 234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD-I--AKVGQLKKLEV-LS 308 (582)
Q Consensus 234 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~-~--~~~~~l~~L~~-L~ 308 (582)
++++.+++ ....+|..+ .++++.|+|++|.++.+|. .+.++++|++|+|++|++.+ + ..+.++++|+. +.
T Consensus 12 ~~v~C~~~--~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQES--KVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEEST--TCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCC--CCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 56777765 566788765 4689999999999999886 58999999999999999866 2 45788988776 55
Q ss_pred eeCCCCCccch-hhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCC-CCccE
Q 048810 309 FRDSDIEQLPL-EIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGL-SKLTT 386 (582)
Q Consensus 309 l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~ 386 (582)
+.+|+++.+|+ .+..+++|++|++++ +.+..+|+..+....++..|++.++..... + ....+..+ ..++.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l------~~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHT-I------ERNSFVGLSFESVI 158 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCE-E------CTTSSTTSBSSCEE
T ss_pred ccCCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhcccccccc-c------cccchhhcchhhhh
Confidence 66789998865 478899999999999 578888875555667788888866432211 0 12234444 46889
Q ss_pred EEEEecccccCCccc-ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCc
Q 048810 387 LEIHVRYAEILPQDL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGV 465 (582)
Q Consensus 387 L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~ 465 (582)
|++++|.++.++..+ ...+|+.+.+..+.. +..+ |..+...+++|+.|+++++. +
T Consensus 159 L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~---------------------l~~i--~~~~f~~l~~L~~LdLs~N~-l 214 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNN---------------------LEEL--PNDVFHGASGPVILDISRTR-I 214 (350)
T ss_dssp EECCSSCCCEECTTSSTTEEEEEEECTTCTT---------------------CCCC--CTTTTTTEECCSEEECTTSC-C
T ss_pred hccccccccCCChhhccccchhHHhhccCCc---------------------ccCC--CHHHhccCcccchhhcCCCC-c
Confidence 999999999888775 556676666533222 1111 33222224899999999986 5
Q ss_pred ccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccc
Q 048810 466 PSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIG 517 (582)
Q Consensus 466 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 517 (582)
+.++. +.|.+|+.|.+.++..++.+| ....|++|+.+++.+
T Consensus 215 ~~lp~-----~~~~~L~~L~~l~~~~l~~lP------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 215 HSLPS-----YGLENLKKLRARSTYNLKKLP------TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCCS-----SSCTTCCEEECTTCTTCCCCC------CTTTCCSCCEEECSC
T ss_pred CccCh-----hhhccchHhhhccCCCcCcCC------CchhCcChhhCcCCC
Confidence 55543 358899999999998888876 467788999998864
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=1.5e-15 Score=162.29 Aligned_cols=176 Identities=21% Similarity=0.275 Sum_probs=149.3
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
......++.|+++++.+..++....+++|+.|++++| ....+++ +..+++|++|+|++|.+..+| .++.+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N--~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN--KLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS--CCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC--CCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 4456788999999999988887668999999999987 4445554 689999999999999998877 6899999999
Q ss_pred EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
|+|++|.+..++.+..+++|+.|++++|.+..+ ..+..+++|++|++++| .+..+++ +..+++|+.|++++|.+..
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCC
Confidence 999999999988899999999999999999988 56899999999999994 6777766 7899999999999987542
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccccCCc
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQ 399 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 399 (582)
+..+..+++|+.|++++|.+...|.
T Consensus 190 ----------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 190 ----------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ----------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ----------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 3568889999999999988766544
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=3.2e-16 Score=156.38 Aligned_cols=175 Identities=18% Similarity=0.247 Sum_probs=127.9
Q ss_pred cCcEEEEecCCCCcCCCC-CCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccCccEEE
Q 048810 209 KDPIAISLPYRGDQVLPQ-RMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLINLQTLC 286 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~~L~ 286 (582)
..++.+++.++.+...+. ...+++|+.|+++++ ..........+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 678888888888755443 347888888888887 22222133455788888888888888764 667788888888888
Q ss_pred cCCC-CCCC---ccccCCCCCccEEEeeCC-CCCc--cchhhcCCC-CCCEEcccccc-cc--cccCcccccCCCcccEE
Q 048810 287 LDGC-RLKD---IAKVGQLKKLEVLSFRDS-DIEQ--LPLEIGQLR-RLQLLDLSNCW-TL--EVIAPNVISKLSRLEEL 355 (582)
Q Consensus 287 L~~~-~l~~---~~~~~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~-~l--~~lp~~~l~~l~~L~~L 355 (582)
+++| .++. +..+..+++|++|++++| .++. ++..+..++ +|++|++++|. .+ ..+|.. +..+++|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEE
Confidence 8888 6764 455778888888888888 8873 677788888 88888888864 33 334443 6778888888
Q ss_pred EcCCCc-cccccccCCCccchhhccCCCCccEEEEEecc
Q 048810 356 YMGNSF-KRWEKVEGGSNASLVELNGLSKLTTLEIHVRY 393 (582)
Q Consensus 356 ~l~~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 393 (582)
++++|. +... .+..+.++++|+.|++++|.
T Consensus 228 ~l~~~~~l~~~--------~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 228 DLSDSVMLKND--------CFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ECTTCTTCCGG--------GGGGGGGCTTCCEEECTTCT
T ss_pred eCCCCCcCCHH--------HHHHHhCCCCCCEeeCCCCC
Confidence 888886 3222 45677788888888888774
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=5.1e-15 Score=138.76 Aligned_cols=151 Identities=21% Similarity=0.251 Sum_probs=123.7
Q ss_pred CcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcC
Q 048810 210 DPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLD 288 (582)
Q Consensus 210 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~ 288 (582)
..+.++.+++.+..+|.... ++|+.|+++++ ....+++..|..+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP-TNAQILYLHDN--QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC-TTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCCC-CCCCEEEcCCC--ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 34568888888888887554 78999999887 4555656667889999999999999988875 46889999999999
Q ss_pred CCCCCC-c-cccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 289 GCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 289 ~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
+|+++. + ..+..+++|++|++++|+++.+|..+..+++|++|++++ +.+..+|+..+..+++|+.|++.+|.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 999888 3 447889999999999999999998899999999999998 57888887668888999999998886543
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=8.4e-16 Score=147.29 Aligned_cols=172 Identities=19% Similarity=0.182 Sum_probs=128.6
Q ss_pred ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810 208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL 287 (582)
Q Consensus 208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 287 (582)
..++..+.+.++.+..++....+++|+.|+++++ ....++ .+..+++|++|++++|.++.+|. ++.+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n--~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS--NIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTS--CCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCC--Ccccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 3444555566677766664446777888888776 344555 25778888888888888888877 888888888888
Q ss_pred CCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810 288 DGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV 367 (582)
Q Consensus 288 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (582)
++|+++..+.+.. .+|++|++++|.++.++ .++.+++|++|++++ +.++.++. ++.+++|++|++++|.+...
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCBC--
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcch--
Confidence 8888888444444 88888888888888876 488888888988888 56777763 78888888888888865322
Q ss_pred cCCCccchhhccCCCCccEEEEEecccccCCc
Q 048810 368 EGGSNASLVELNGLSKLTTLEIHVRYAEILPQ 399 (582)
Q Consensus 368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 399 (582)
..+..+++|+.|++++|.+...|.
T Consensus 166 --------~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 --------GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp --------TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred --------HHhccCCCCCEEeCCCCcccCCcc
Confidence 567778888888888887765543
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.8e-16 Score=156.14 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=111.2
Q ss_pred CCCccEEEcCCCCCCC-CChhh--hcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCCccc-hhhcCCC
Q 048810 256 MEGLKVLQFPGIGSSS-LPSSL--DRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIEQLP-LEIGQLR 325 (582)
Q Consensus 256 l~~Lr~L~l~~~~~~~-lp~~i--~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~ 325 (582)
+++|++|++++|.+.. .|..+ +.+++|++|++++|.+.. + ..+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3457777777776654 44454 666777777777776665 1 23345667777777777666554 3466677
Q ss_pred CCCEEcccccccccc--cCcc-cccCCCcccEEEcCCCccccccccCCCccchh-hccCCCCccEEEEEecccccC-Ccc
Q 048810 326 RLQLLDLSNCWTLEV--IAPN-VISKLSRLEELYMGNSFKRWEKVEGGSNASLV-ELNGLSKLTTLEIHVRYAEIL-PQD 400 (582)
Q Consensus 326 ~L~~L~l~~~~~l~~--lp~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~ 400 (582)
+|++|++++|...+. ++.. .++.+++|++|++++|.+... ..... .++.+++|++|++++|.+... |..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP------TGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH------HHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch------HHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 777777776432221 2211 135666777777776654321 00111 135666777777777766655 433
Q ss_pred c-c---cccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccCcccccccccCCC
Q 048810 401 L-V---SVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEGVPSVVHELDDGE 476 (582)
Q Consensus 401 ~-~---~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 476 (582)
+ . +++|+.|+++.+.. . .. |.++ +++|+.|++++|..... +. ..
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l-~--------------------~l---p~~~---~~~L~~L~Ls~N~l~~~-~~----~~ 291 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGL-E--------------------QV---PKGL---PAKLRVLDLSSNRLNRA-PQ----PD 291 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCC-C--------------------SC---CSCC---CSCCSCEECCSCCCCSC-CC----TT
T ss_pred HHhccCcCcCCEEECCCCCC-C--------------------ch---hhhh---cCCCCEEECCCCcCCCC-ch----hh
Confidence 3 2 24666666544433 0 00 2222 25777777777776543 11 23
Q ss_pred CCCCCcEEEEeecC
Q 048810 477 GFPRLKHLYVESCS 490 (582)
Q Consensus 477 ~l~~L~~L~l~~~~ 490 (582)
.+++|++|++++++
T Consensus 292 ~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 292 ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCSCEECSSTT
T ss_pred hCCCccEEECcCCC
Confidence 67778888877764
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=4.1e-16 Score=166.62 Aligned_cols=185 Identities=22% Similarity=0.233 Sum_probs=154.6
Q ss_pred EEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCC
Q 048810 213 AISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRL 292 (582)
Q Consensus 213 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l 292 (582)
.+.+..+.+..+.....+++|+.|.+.++ ....++. +..+++|+.|+|++|.+..+|. ++.+++|++|+|++|.+
T Consensus 25 ~l~l~~~~i~~~~~~~~L~~L~~L~l~~n--~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 25 KDNLKKKSVTDAVTQNELNSIDQIIANNS--DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHTTCSCTTSEECHHHHTTCCCCBCTTC--CCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHhccCCCcccccchhcCCCCCEEECcCC--CCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 34445555555544457888999999887 4455553 5889999999999999999887 99999999999999999
Q ss_pred CCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCc
Q 048810 293 KDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSN 372 (582)
Q Consensus 293 ~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 372 (582)
..++.+..+++|++|++++|.+..+| .+..+++|++|++++ +.+..++. ++.+++|+.|++++|.+...
T Consensus 100 ~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~~------- 168 (605)
T 1m9s_A 100 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISDI------- 168 (605)
T ss_dssp CCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GGSCTTCSEEECCSSCCCCC-------
T ss_pred CCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCchh--hcccCCCCEEECcCCcCCCc-------
Confidence 99889999999999999999999876 489999999999999 46777743 89999999999999976543
Q ss_pred cchhhccCCCCccEEEEEecccccCCcccccccccEEEEEeccc
Q 048810 373 ASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGEA 416 (582)
Q Consensus 373 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 416 (582)
.. +..+++|+.|+|++|.+..++....+++|+.|++..+..
T Consensus 169 --~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 169 --VP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred --hh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence 22 889999999999999999886545889999999876554
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.7e-15 Score=138.59 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=131.2
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh-hhcccCccEEEcCCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LDRLINLQTLCLDGC 290 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~L~~L~~L~L~~~ 290 (582)
+.++..++.+..+|... .++++.|+++++ ....++...|..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETN--SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSS--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCC--ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46677777777777554 468889999887 45567777778899999999999998887754 588899999999999
Q ss_pred CCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810 291 RLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV 367 (582)
Q Consensus 291 ~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (582)
.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee----
Confidence 8888 4 4478899999999999988888775 67889999999988 5677787766788899999999887542
Q ss_pred cCCCccchhhccCCCCccEEEEEecccc-cCCcc
Q 048810 368 EGGSNASLVELNGLSKLTTLEIHVRYAE-ILPQD 400 (582)
Q Consensus 368 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~ 400 (582)
+.+++|+.|+++.|.+. .+|..
T Consensus 162 -----------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 -----------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -----------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred -----------cCCCCHHHHHHHHHhCCceeecc
Confidence 23456777777766554 44443
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=2.6e-15 Score=137.34 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=102.3
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccE
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEV 306 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~ 306 (582)
.+++|+.|+++++ ....++ . +..+++|++|++++|.++.++ .+..+++|++|++++|.++. +..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n--~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANI--NVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESS--CCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCC--CccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 4567777777776 333455 2 467777777777777666554 57777777777777777775 677777777777
Q ss_pred EEeeCCCCCc-cchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCcc
Q 048810 307 LSFRDSDIEQ-LPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLT 385 (582)
Q Consensus 307 L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 385 (582)
|++++|.++. .|..++.+++|++|++++|..++.+|. +..+++|++|++++|.+... ..+..+++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~----------~~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY----------RGIEDFPKLN 184 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC----------TTGGGCSSCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh----------HHhccCCCCC
Confidence 7777777773 566677777777777777554666663 67777777777777754322 2566677777
Q ss_pred EEEEEecccc
Q 048810 386 TLEIHVRYAE 395 (582)
Q Consensus 386 ~L~l~~~~~~ 395 (582)
.|++++|.+.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 7777777654
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=4.6e-15 Score=135.66 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=129.8
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccCcc
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLINLQ 283 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~L~ 283 (582)
.....+++.++++++.+..++....+++|+.|+++++ ....++ .+..+++|++|++++|.++. .|..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n--~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI--HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC--CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC--CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3445789999999999999886568999999999987 333332 35889999999999999986 678899999999
Q ss_pred EEEcCCCCCCC--ccccCCCCCccEEEeeCCC-CCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 284 TLCLDGCRLKD--IAKVGQLKKLEVLSFRDSD-IEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 284 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
+|++++|.++. +..++.+++|++|++++|. +..+| .+..+++|++|++++ +.+..++. +..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCc
Confidence 99999999997 7889999999999999998 88888 699999999999999 46777773 889999999999998
Q ss_pred ccc
Q 048810 361 FKR 363 (582)
Q Consensus 361 ~~~ 363 (582)
.+.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 754
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=7e-15 Score=136.87 Aligned_cols=148 Identities=19% Similarity=0.238 Sum_probs=106.1
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGC 290 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~ 290 (582)
+.++.+++.+..+|.... ++++.|+++++ ....++...|..+++|++|++++|.++.+ |..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n--~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQN--TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSS--CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCC--cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 457777777777776543 67777887776 45556665667777888888888877764 667777788888888888
Q ss_pred CCCC-c-cccCCCCCccEEEeeCCCCCccc-hhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810 291 RLKD-I-AKVGQLKKLEVLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 291 ~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
.++. + ..+..+++|++|++++|.++.++ ..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7777 3 33577778888888887777663 4567777788888777 5566666665677777777777777543
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=146.87 Aligned_cols=195 Identities=16% Similarity=0.088 Sum_probs=150.5
Q ss_pred hccCcEEEEecCCCCcC-CCCC---CCCCCccEEEeeccCcccccc---ChHHhcCCCCccEEEcCCCCCCCCC-hhhhc
Q 048810 207 IRKDPIAISLPYRGDQV-LPQR---MRCPRLGLFLLHTIGLCSIQV---SDHFFEGMEGLKVLQFPGIGSSSLP-SSLDR 278 (582)
Q Consensus 207 ~~~~~~~l~l~~~~~~~-l~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~ 278 (582)
...+++++++++|.+.. .+.. ..+++|++|++++| ...... +...+..+++|++|++++|.+..+| ..++.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 44669999999999854 4443 56899999999998 222222 2233457999999999999998865 67889
Q ss_pred ccCccEEEcCCCCCCC----c--cccCCCCCccEEEeeCCCCCccchh----hcCCCCCCEEccccccccccc-Cccccc
Q 048810 279 LINLQTLCLDGCRLKD----I--AKVGQLKKLEVLSFRDSDIEQLPLE----IGQLRRLQLLDLSNCWTLEVI-APNVIS 347 (582)
Q Consensus 279 L~~L~~L~L~~~~l~~----~--~~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~l~~l-p~~~l~ 347 (582)
+++|++|++++|++.. + ..++.+++|++|++++|+++.+|.. ++.+++|++|++++| .++.. |.. ++
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~-~~ 245 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS-AP 245 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC-CS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh-HH
Confidence 9999999999998764 1 3347899999999999999877763 578899999999994 56665 654 56
Q ss_pred CC---CcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcccccccccEEEEEecc
Q 048810 348 KL---SRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQDLVSVELQRYKMFIGE 415 (582)
Q Consensus 348 ~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 415 (582)
.+ ++|++|++++|.+... +..+. ++|+.|++++|.+..+|....+++|+.|+++.+.
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~l---------p~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQV---------PKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSC---------CSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred hccCcCcCCEEECCCCCCCch---------hhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 65 6999999999986532 33333 7999999999999988765578889988876554
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=135.73 Aligned_cols=148 Identities=15% Similarity=0.204 Sum_probs=104.0
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCcccccc-ChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQV-SDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDG 289 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~ 289 (582)
+.++++++.+..+|..+ .+.++.|+++++ ....+ +...|..+++|++|++++|.++.++. .++.+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N--~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNN--EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSS--CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCC--cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888887777644 345677777776 33333 34456777788888888887777554 677777888888888
Q ss_pred CCCCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810 290 CRLKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 290 ~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
|.++. +..+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 87777 34477777888888887777766 45577777788888777 4566665555777777777777777643
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=1.9e-14 Score=152.02 Aligned_cols=177 Identities=16% Similarity=0.151 Sum_probs=145.9
Q ss_pred ccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEc
Q 048810 208 RKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCL 287 (582)
Q Consensus 208 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L 287 (582)
..+++.|++++|.+..+|... .++|+.|++++| ....+| ..+++|++|++++|.++.+|. ++. +|++|++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N--~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQN--ALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSS--CCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCC--CCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 458999999999998888866 488999999998 445677 357899999999999999998 666 9999999
Q ss_pred CCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccc
Q 048810 288 DGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKV 367 (582)
Q Consensus 288 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~ 367 (582)
++|.++.++. .+++|++|++++|.++.+|. .+++|++|++++ +.++.+|. ++ ++|+.|++++|.+...
T Consensus 128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~l-- 195 (571)
T 3cvr_A 128 DNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLESL-- 195 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSSC--
T ss_pred CCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCch--
Confidence 9999998333 78999999999999999987 678999999999 56788887 55 8999999999976532
Q ss_pred cCCCccchhhccCCCCc-------cEEEEEecccccCCccc-ccccccEEEEEeccc
Q 048810 368 EGGSNASLVELNGLSKL-------TTLEIHVRYAEILPQDL-VSVELQRYKMFIGEA 416 (582)
Q Consensus 368 ~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 416 (582)
+. +.. +| +.|++++|.+..+|..+ .+++|+.|+++.+..
T Consensus 196 -------p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 196 -------PA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -------CC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred -------hh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 22 332 55 99999999999999876 788999998876654
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=8.9e-16 Score=156.28 Aligned_cols=278 Identities=17% Similarity=0.131 Sum_probs=148.4
Q ss_pred cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCC----ccchhh-------c
Q 048810 260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIE----QLPLEI-------G 322 (582)
Q Consensus 260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~----~lp~~i-------~ 322 (582)
++..++...+..++..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+. .+|..+ .
T Consensus 12 ~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~ 91 (386)
T 2ca6_A 12 KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91 (386)
T ss_dssp EESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh
Confidence 33333333344455666666666666666666654 2 22556666667766665443 234433 5
Q ss_pred CCCCCCEEcccccccccc-----cCcccccCCCcccEEEcCCCccccccccCCCccchhhccCC---------CCccEEE
Q 048810 323 QLRRLQLLDLSNCWTLEV-----IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGL---------SKLTTLE 388 (582)
Q Consensus 323 ~l~~L~~L~l~~~~~l~~-----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~ 388 (582)
.+++|++|++++| .++. +|.. +..+++|++|++++|.+.... .......+..+ ++|++|+
T Consensus 92 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~----~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 92 KCPKLHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQA----GAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp TCTTCCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHH----HHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred hCCcccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHH----HHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 6677777777764 3333 4433 566777777777776653220 00012223333 7888888
Q ss_pred EEecccc--cCCc---cc-ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccc
Q 048810 389 IHVRYAE--ILPQ---DL-VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETL 462 (582)
Q Consensus 389 l~~~~~~--~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~ 462 (582)
+++|.+. .++. .+ .+++|+.|++..+.. ...+..... +.++.. +++|+.|+|++|
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l----------------~~~g~~~l~--~~~l~~-~~~L~~L~Ls~n 226 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI----------------RPEGIEHLL--LEGLAY-CQELKVLDLQDN 226 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC----------------CHHHHHHHH--HTTGGG-CTTCCEEECCSS
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC----------------CHhHHHHHH--HHHhhc-CCCccEEECcCC
Confidence 8888765 2331 22 556777777654443 000000000 112333 378888888887
Q ss_pred cCc----ccccccccCCCCCCCCcEEEEeecCCceeeeccccccc--CCCCcccccccccccccccc-----cccccccC
Q 048810 463 EGV----PSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVG--CEVFPLLETLYLIGLANLET-----ICCSQLRE 531 (582)
Q Consensus 463 ~~~----~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~L~~-----~~~~~~~~ 531 (582)
... ..++..+ ..+++|++|+|++|. +........... .+.+++|+.|+++++ .+.. ++...
T Consensus 227 ~l~~~g~~~l~~~l---~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l--- 298 (386)
T 2ca6_A 227 TFTHLGSSALAIAL---KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVI--- 298 (386)
T ss_dssp CCHHHHHHHHHHHG---GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHH---
T ss_pred CCCcHHHHHHHHHH---ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHH---
Confidence 742 3344433 378888888888874 222100000001 134788888888874 4444 33220
Q ss_pred cccCCCccEEEEecccCcccccC--hhHHhhhhhcceeeecc
Q 048810 532 DQSFSNLRIIEVEHCNKLKHLFS--FSMAKNLLWLQKVGVEE 571 (582)
Q Consensus 532 ~~~~~~L~~L~l~~c~~L~~l~~--~~~~~~l~~L~~L~i~~ 571 (582)
...+++|+.|++++|+ ++...+ ......+++++.+++..
T Consensus 299 ~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhh
Confidence 1357888888888874 444431 23344566666555543
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=9.7e-16 Score=156.00 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=122.0
Q ss_pred HhhccCcEEEEecCCCCcCC-----CCCC-CCCCccEEEeeccC--ccccccChHH------hcCCCCccEEEcCCCCCC
Q 048810 205 ETIRKDPIAISLPYRGDQVL-----PQRM-RCPRLGLFLLHTIG--LCSIQVSDHF------FEGMEGLKVLQFPGIGSS 270 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~------~~~l~~Lr~L~l~~~~~~ 270 (582)
.....+++.|++++|.+... +..+ .+++|+.|+++++. .....+|..+ +..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 33456788888888877432 2222 57788888887751 1112233332 367788888888888876
Q ss_pred C-----CChhhhcccCccEEEcCCCCCCC--ccc----cCCC---------CCccEEEeeCCCCC--ccc---hhhcCCC
Q 048810 271 S-----LPSSLDRLINLQTLCLDGCRLKD--IAK----VGQL---------KKLEVLSFRDSDIE--QLP---LEIGQLR 325 (582)
Q Consensus 271 ~-----lp~~i~~L~~L~~L~L~~~~l~~--~~~----~~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l~ 325 (582)
. +|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|.+. .+| ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 67777888888888888888764 222 3333 78888888888776 444 4566778
Q ss_pred CCCEEcccccccccc-----cCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccccc
Q 048810 326 RLQLLDLSNCWTLEV-----IAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEI 396 (582)
Q Consensus 326 ~L~~L~l~~~~~l~~-----lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 396 (582)
+|++|++++| .++. +.+..+..+++|++|++++|.+... .....+..+..+++|+.|++++|.+..
T Consensus 188 ~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 188 LLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp TCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred CcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----HHHHHHHHHccCCCcCEEECCCCCCch
Confidence 8888888885 4441 2221267788888888888775311 001135567777888888888776654
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=2.6e-15 Score=151.25 Aligned_cols=241 Identities=11% Similarity=0.064 Sum_probs=111.4
Q ss_pred HhcCCCCccEEEcCCCCCCCCC-----hhhhccc-CccEEEcCCCCCCC--ccccCCC-----CCccEEEeeCCCCCccc
Q 048810 252 FFEGMEGLKVLQFPGIGSSSLP-----SSLDRLI-NLQTLCLDGCRLKD--IAKVGQL-----KKLEVLSFRDSDIEQLP 318 (582)
Q Consensus 252 ~~~~l~~Lr~L~l~~~~~~~lp-----~~i~~L~-~L~~L~L~~~~l~~--~~~~~~l-----~~L~~L~l~~~~l~~lp 318 (582)
++...++|++|++++|.++..+ ..+..++ +|++|++++|.+.. +..+..+ ++|++|++++|.++..+
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 3344444666666666655543 3445555 56666666665554 3333332 55666666666555332
Q ss_pred hh-----hcCC-CCCCEEcccccccccccCcccc----cC-CCcccEEEcCCCccccccccCCCccchhhccCCC-CccE
Q 048810 319 LE-----IGQL-RRLQLLDLSNCWTLEVIAPNVI----SK-LSRLEELYMGNSFKRWEKVEGGSNASLVELNGLS-KLTT 386 (582)
Q Consensus 319 ~~-----i~~l-~~L~~L~l~~~~~l~~lp~~~l----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~ 386 (582)
.. +..+ ++|++|++++| .++..+...+ .. .++|++|++++|.+... ........+..++ +|+.
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK----SSDELIQILAAIPANVNS 171 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS----CHHHHHHHHHTSCTTCCE
T ss_pred HHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH----HHHHHHHHHhcCCccccE
Confidence 21 3333 55666666653 3444433222 22 24566666666544321 0011222333443 5666
Q ss_pred EEEEecccccCCcc-c-----cc-ccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceee
Q 048810 387 LEIHVRYAEILPQD-L-----VS-VELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWL 459 (582)
Q Consensus 387 L~l~~~~~~~~~~~-~-----~~-~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L 459 (582)
|++++|.+...... + .. ++|+.|+++.+.. . ..+.... +..+....++|++|++
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~---------------~~~~~~l---~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-G---------------LKSYAEL---AYIFSSIPNHVVSLNL 232 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-G---------------GSCHHHH---HHHHHHSCTTCCEEEC
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC-C---------------hhHHHHH---HHHHhcCCCCceEEEC
Confidence 66666655443321 1 22 3555555543332 0 0000001 2333333357788888
Q ss_pred ccccCcccccccc-cCCCCCCCCcEEEEeecCCceeeecccc---cccCCCCcccccccccc
Q 048810 460 ETLEGVPSVVHEL-DDGEGFPRLKHLYVESCSEILHIVGSVR---RVGCEVFPLLETLYLIG 517 (582)
Q Consensus 460 ~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~~L~~L~l~~ 517 (582)
++|.........+ ...+.+++|++|++++|. +..+..... ......+++|+.|++++
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 7776433222111 013467788888888774 111111000 01234556677777766
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=1.4e-14 Score=145.84 Aligned_cols=171 Identities=19% Similarity=0.160 Sum_probs=105.3
Q ss_pred EEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhc-CCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCC
Q 048810 212 IAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFE-GMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDG 289 (582)
Q Consensus 212 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~ 289 (582)
+.++.+++.+..+|..+ .+.++.|++++| ....++...|. .+++|++|++++|.++.++ ..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSS--CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCC--CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45677777776666543 234667777765 44555555555 6777777777777776655 3566777777777777
Q ss_pred CCCCC--ccccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEcccccccccccCcccc---cCCCcccEEEcCCCccc
Q 048810 290 CRLKD--IAKVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNCWTLEVIAPNVI---SKLSRLEELYMGNSFKR 363 (582)
Q Consensus 290 ~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~l---~~l~~L~~L~l~~~~~~ 363 (582)
|+++. +..+..+.+|++|++++|.+..+ |..+..+++|++|++++ +.+..+|...+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77666 23466777777777777777655 34566677777777776 45666666544 45667777777666554
Q ss_pred cccccCCCccchhhccCCCC--ccEEEEEeccc
Q 048810 364 WEKVEGGSNASLVELNGLSK--LTTLEIHVRYA 394 (582)
Q Consensus 364 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 394 (582)
.. ....+..++. |+.|++.+|.+
T Consensus 177 ~l--------~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KL--------PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CC--------CHHHHHHSCHHHHTTEECCSSCE
T ss_pred cc--------CHHHhhhccHhhcceEEecCCCc
Confidence 33 2234444444 35566665543
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=2.8e-14 Score=126.83 Aligned_cols=140 Identities=22% Similarity=0.211 Sum_probs=115.7
Q ss_pred CCCCccEEEcCCCCCC--CCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCc-cchhhcCCCCCCEEc
Q 048810 255 GMEGLKVLQFPGIGSS--SLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQ-LPLEIGQLRRLQLLD 331 (582)
Q Consensus 255 ~l~~Lr~L~l~~~~~~--~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~ 331 (582)
..++|++|++++|.++ .+|..+..+++|++|++++|.++....+..+++|++|++++|.+.. +|..++.+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4578999999999998 7898889999999999999998888888999999999999999997 777777899999999
Q ss_pred ccccccccccCc-ccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcc
Q 048810 332 LSNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD 400 (582)
Q Consensus 332 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 400 (582)
+++| .++.+|. ..++.+++|++|++++|.+... .......+..+++|+.|++++|....+|..
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL-----NDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS-----TTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch-----HHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9994 6777763 3488999999999999876543 000113678899999999999988877654
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=3.2e-14 Score=132.38 Aligned_cols=148 Identities=12% Similarity=0.112 Sum_probs=106.1
Q ss_pred cEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC--hhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEe
Q 048810 234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSF 309 (582)
Q Consensus 234 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l 309 (582)
++++++++ ....+|..+ ...+++|++++|.++.++ ..++.+++|++|++++|.++. +..+..+++|++|++
T Consensus 14 ~~l~~s~n--~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQ--KLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSS--CCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCC--CcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 46777665 445566544 345678888888887763 247788888888888888877 346788888888888
Q ss_pred eCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810 310 RDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388 (582)
Q Consensus 310 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 388 (582)
++|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.+... .+..+..+++|+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTV--------APGAFDTLHSLSTLN 159 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCB--------CTTTTTTCTTCCEEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEE--------CHHHhcCCCCCCEEE
Confidence 88888877654 77788888888888 456666555577888888888888766544 345677777888888
Q ss_pred EEecccc
Q 048810 389 IHVRYAE 395 (582)
Q Consensus 389 l~~~~~~ 395 (582)
+++|.+.
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 7776543
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=8.4e-15 Score=147.43 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=138.8
Q ss_pred hhHHHHHhhccCcEEEEecCCCCcCCCCCC---CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-
Q 048810 199 LEKKMEETIRKDPIAISLPYRGDQVLPQRM---RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS- 274 (582)
Q Consensus 199 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~- 274 (582)
.+..+|...+..++.|++++|.+..++... .+++|+.|++++| ....++...|..+++|++|+|++|.++.+|.
T Consensus 29 ~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 29 QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN--HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC--cCCccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence 445555556678999999999998887643 7899999999987 6667777778999999999999999998765
Q ss_pred hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchhh----cCCCCCCEEcccccccccccCcccccC
Q 048810 275 SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLEI----GQLRRLQLLDLSNCWTLEVIAPNVISK 348 (582)
Q Consensus 275 ~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~l~~lp~~~l~~ 348 (582)
.+..+.+|++|+|++|+++. +..+..+++|++|++++|.++.+|..+ ..+++|++|++++ +.+..+|...+..
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~ 185 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQK 185 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHH
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhh
Confidence 68999999999999999998 578999999999999999999999876 6799999999999 6788998776788
Q ss_pred CCc--ccEEEcCCCccc
Q 048810 349 LSR--LEELYMGNSFKR 363 (582)
Q Consensus 349 l~~--L~~L~l~~~~~~ 363 (582)
+++ |+.|++.+|.+.
T Consensus 186 l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 186 LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCHHHHTTEECCSSCEE
T ss_pred ccHhhcceEEecCCCcc
Confidence 887 489999998764
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.3e-14 Score=133.84 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=129.7
Q ss_pred HHHHhhccCcEEEEecCCCCcCCCCCC--CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChh-hhc
Q 048810 202 KMEETIRKDPIAISLPYRGDQVLPQRM--RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LDR 278 (582)
Q Consensus 202 ~~~~~~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~ 278 (582)
..|...+.+++++++++|.+..++... .+++|+.|++.++ ....++...|..+++|++|++++|.++.+|.. ++.
T Consensus 21 ~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 21 SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN--KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC--ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 344445678999999999998887743 8999999999997 55678888889999999999999999998754 689
Q ss_pred ccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEE
Q 048810 279 LINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEEL 355 (582)
Q Consensus 279 L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L 355 (582)
+++|++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++|+.|
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L 170 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYL 170 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHH
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHH
Confidence 9999999999999998 4 4479999999999999999988876 78899999999999621 3567788888
Q ss_pred EcCCCccccc
Q 048810 356 YMGNSFKRWE 365 (582)
Q Consensus 356 ~l~~~~~~~~ 365 (582)
++..+.+...
T Consensus 171 ~~~~n~~~g~ 180 (208)
T 2o6s_A 171 SEWINKHSGV 180 (208)
T ss_dssp HHHHHHCTTT
T ss_pred HHHHHhCCce
Confidence 8877765544
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=4.3e-14 Score=131.51 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=82.0
Q ss_pred cEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEee
Q 048810 234 GLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFR 310 (582)
Q Consensus 234 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~ 310 (582)
+.+++.++ ....+|..+ .+.|+.|++++|.++.+|. .+..+++|++|++++|.++. +..+..+++|++|+++
T Consensus 14 ~~v~c~~~--~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGK--GLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTS--CCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCC--CcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 34444443 334444433 2456666666666665443 45666666666666666655 4556666666666666
Q ss_pred CCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEE
Q 048810 311 DSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEI 389 (582)
Q Consensus 311 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 389 (582)
+|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.+... ....+..+++|+.|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTI--------AKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEE--------CHHHHhCCCCCCEEEe
Confidence 6666666554 35566666666666 345555444456666666666666654333 2233455556666665
Q ss_pred Eecc
Q 048810 390 HVRY 393 (582)
Q Consensus 390 ~~~~ 393 (582)
++|.
T Consensus 160 ~~N~ 163 (220)
T 2v9t_B 160 AQNP 163 (220)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5554
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=6.4e-14 Score=134.15 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=130.9
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
.....+++.+++++|.+..++....+++|+.|++++| ....++. +..+++|++|++++|.++.+|.... .+|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N--~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN--QISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC--ccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 4456789999999999999986568999999999987 5556665 6899999999999999999886443 89999
Q ss_pred EEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 285 LCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 285 L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
|++++|+++.++.+..+++|++|++++|+++.+| .++.+++|++|++++ +.+..++. +..+++|+.|++++|.+..
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~~--l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTGG--LTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCTT--STTCCCCCEEEEEEEEEEC
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchHH--hccCCCCCEEeCCCCcccC
Confidence 9999999999778999999999999999999987 689999999999999 56777733 8899999999999987543
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1e-13 Score=129.78 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=97.9
Q ss_pred ccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEe
Q 048810 233 LGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSF 309 (582)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l 309 (582)
.++++++++ ....+|..+ .++|++|++++|.++.+ |..+..+++|++|++++|+++. + ..+..+++|++|++
T Consensus 21 ~~~v~c~~~--~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSK--RHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTS--CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCC--CcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 455666554 455566543 36777777777777765 4567777777777777777766 3 34577777777777
Q ss_pred eCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810 310 RDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388 (582)
Q Consensus 310 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 388 (582)
++|.++.+|.. +..+++|++|++++ +.+..+|.. +..+++|++|++++|.+... ....+..+++|+.|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSI--------PHGAFDRLSSLTHAY 165 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEE
T ss_pred CCCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCcc--------CHHHHhCCCCCCEEE
Confidence 77777776655 46677777777777 456677665 56777777777777765433 223456667777777
Q ss_pred EEecccc
Q 048810 389 IHVRYAE 395 (582)
Q Consensus 389 l~~~~~~ 395 (582)
+.+|.+.
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 7666543
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=4.7e-15 Score=149.40 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=29.9
Q ss_pred hcCCC-CccEEEcCCCCCCCC-Chhhhcc-----cCccEEEcCCCCCCC--ccc----cCCC-CCccEEEeeCCCCCc
Q 048810 253 FEGME-GLKVLQFPGIGSSSL-PSSLDRL-----INLQTLCLDGCRLKD--IAK----VGQL-KKLEVLSFRDSDIEQ 316 (582)
Q Consensus 253 ~~~l~-~Lr~L~l~~~~~~~l-p~~i~~L-----~~L~~L~L~~~~l~~--~~~----~~~l-~~L~~L~l~~~~l~~ 316 (582)
|..++ +|++|++++|.++.. +..+..+ ++|++|++++|.++. +.. +..+ ++|++|++++|.++.
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 34444 555555555555442 3334333 555555555555443 221 2233 455555555555543
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=1.3e-13 Score=145.65 Aligned_cols=164 Identities=17% Similarity=0.137 Sum_probs=135.4
Q ss_pred HHHhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCc
Q 048810 203 MEETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINL 282 (582)
Q Consensus 203 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L 282 (582)
+|.....+++.|++++|.+..+| ..+++|+.|++++| ....+|. + .. +|++|++++|.++.+|. .+++|
T Consensus 74 lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N--~l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L 142 (571)
T 3cvr_A 74 LPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDN--RLSTLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALL 142 (571)
T ss_dssp CCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSS--CCSCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTC
T ss_pred cCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCC--CCCCcch-h-hc--CCCEEECCCCcCCCCCC---cCccc
Confidence 33333468999999999999998 45799999999998 4455776 3 43 99999999999999997 68999
Q ss_pred cEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcc-------cEE
Q 048810 283 QTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRL-------EEL 355 (582)
Q Consensus 283 ~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L-------~~L 355 (582)
++|++++|.++.++. .+++|++|++++|.++.+|. +. ++|++|++++ +.++.+|. +.. +| +.|
T Consensus 143 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~L~~L 212 (571)
T 3cvr_A 143 EYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSEETEIFF 212 (571)
T ss_dssp CEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC----------CCEEE
T ss_pred cEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhcccccceEE
Confidence 999999999998333 68899999999999999998 65 8999999999 57888887 444 67 999
Q ss_pred EcCCCccccccccCCCccchhhccCCCCccEEEEEeccccc
Q 048810 356 YMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEI 396 (582)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 396 (582)
++++|.+.. .+..+..+++|+.|++++|.+..
T Consensus 213 ~Ls~N~l~~---------lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 213 RCRENRITH---------IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ECCSSCCCC---------CCGGGGGSCTTEEEECCSSSCCH
T ss_pred ecCCCccee---------cCHHHhcCCCCCEEEeeCCcCCC
Confidence 999997653 36678889999999999998864
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=2.1e-16 Score=167.79 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=94.0
Q ss_pred CccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 281 NLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 281 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
.|++|++++|.++.++.++.+++|++|++++|.++.+|..++.+++|++|++++ +.++.+| . ++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~-l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G-VANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-GTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-cCCCCCCcEEECCCC
Confidence 577888888888884448888888888888888888888888888888888888 5677777 3 788888888888888
Q ss_pred ccccccccCCCccc-hhhccCCCCccEEEEEecccccCCccc-----ccccccEEE
Q 048810 361 FKRWEKVEGGSNAS-LVELNGLSKLTTLEIHVRYAEILPQDL-----VSVELQRYK 410 (582)
Q Consensus 361 ~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~ 410 (582)
.+... . +..++.+++|+.|++++|.+...|... .+++|+.|+
T Consensus 519 ~l~~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQS--------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSS--------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCC--------CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 76443 2 667888888888888888888776654 367777664
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3e-13 Score=120.13 Aligned_cols=133 Identities=20% Similarity=0.166 Sum_probs=84.4
Q ss_pred hhccCcEEEEecCCCCc--CCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC-CChhhhcccC
Q 048810 206 TIRKDPIAISLPYRGDQ--VLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLDRLIN 281 (582)
Q Consensus 206 ~~~~~~~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~L~~ 281 (582)
..+.+++.+++++|.+. .+|... .+++|+.|++++| ....+ ..|..+++|++|++++|.++. +|..+..+++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n--~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV--GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS--CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC--CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 34567788888887776 666553 6667777777666 23333 334666677777777777666 5555556677
Q ss_pred ccEEEcCCCCCCC-c--cccCCCCCccEEEeeCCCCCccch----hhcCCCCCCEEcccccccccccCc
Q 048810 282 LQTLCLDGCRLKD-I--AKVGQLKKLEVLSFRDSDIEQLPL----EIGQLRRLQLLDLSNCWTLEVIAP 343 (582)
Q Consensus 282 L~~L~L~~~~l~~-~--~~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~~l~~lp~ 343 (582)
|++|++++|.++. + ..+..+++|++|++++|.++.+|. .+..+++|++|++++| ....+|.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 7777777776666 3 556666677777777766666655 5666666777766663 3444443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=1.4e-13 Score=119.55 Aligned_cols=128 Identities=23% Similarity=0.208 Sum_probs=87.0
Q ss_pred CCCccEEEcCCCCCC--CCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCc-cchhhcCCCCCCEEcc
Q 048810 256 MEGLKVLQFPGIGSS--SLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQ-LPLEIGQLRRLQLLDL 332 (582)
Q Consensus 256 l~~Lr~L~l~~~~~~--~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 332 (582)
.++|+.|++++|.++ .+|..++.+++|++|++++|.++....++.+++|++|++++|.++. +|..++.+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 466777888887776 5777777777888888887777776667777788888888877776 6666667777888888
Q ss_pred cccccccccCc-ccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEE
Q 048810 333 SNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEI 389 (582)
Q Consensus 333 ~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 389 (582)
++ +.++.+|. ..++.+++|++|++++|.+... .......+..+++|+.|++
T Consensus 96 s~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-----~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNL-----NDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGS-----TTHHHHHHHHCTTCCEETT
T ss_pred CC-CcCCChHHHHHHhhCCCCCEEeCcCCcccch-----HHHHHHHHHHCCCcccccC
Confidence 77 34665531 2367777777777777765433 0000134666677776654
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=2.5e-13 Score=148.76 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=100.8
Q ss_pred ccCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccC--ccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccE
Q 048810 208 RKDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIG--LCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQT 284 (582)
Q Consensus 208 ~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~ 284 (582)
...++++++..+.+...+... ....|+.+.+.... .....++...|..+..|++|+|++|.+..+|..+..+++|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 456788888888886655433 44444444443321 122235666778999999999999999999999999999999
Q ss_pred EEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810 285 LCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 285 L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
|+|++|.++. |..++++++|++|+|++|.++.+|..++.+++|++|++++ +.++.+|.. |+.+++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCccC
Confidence 9999999998 7889999999999999999999999999999999999999 578899987 899999999999999765
Q ss_pred c
Q 048810 364 W 364 (582)
Q Consensus 364 ~ 364 (582)
.
T Consensus 330 ~ 330 (727)
T 4b8c_D 330 K 330 (727)
T ss_dssp S
T ss_pred C
Confidence 4
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.9e-13 Score=121.14 Aligned_cols=135 Identities=13% Similarity=0.169 Sum_probs=97.6
Q ss_pred cCCCCccEEEcCCCCCCCCChhhhccc-CccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhh-cCCCCCCEEc
Q 048810 254 EGMEGLKVLQFPGIGSSSLPSSLDRLI-NLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLD 331 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~-~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~ 331 (582)
..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+..++.+++|++|++++|.++.+|..+ +.+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 567788888888888887764 55554 88888888888877777888888888888888888887665 7788888888
Q ss_pred ccccccccccCc-ccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810 332 LSNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE 395 (582)
Q Consensus 332 l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 395 (582)
+++ +.++.+|. ..++.+++|++|++++|.+... .......+..+++|+.|+++.|...
T Consensus 95 L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-----~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNK-----KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-----TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCc-----HhHHHHHHHHCCccceeCCCcCCHH
Confidence 888 45677765 2367788888888888765432 0001113667778888887776543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=119.33 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=84.9
Q ss_pred CCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEccc
Q 048810 257 EGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLS 333 (582)
Q Consensus 257 ~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 333 (582)
++|++|++++|.++.+|..+..+++|++|++++|.++. +..+..+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 47788888888888888888888888888888888887 3568888888888888888887765 47788888888888
Q ss_pred ccccccccCcccccCCCcccEEEcCCCccc
Q 048810 334 NCWTLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 334 ~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
+ +.+..+|+..+..+++|+.|++++|.+.
T Consensus 111 ~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 G-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp S-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred C-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8 5677777766778888888888887653
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=7.2e-13 Score=120.38 Aligned_cols=124 Identities=18% Similarity=0.246 Sum_probs=64.6
Q ss_pred cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-cc--ccCCCCCccEEEeeCCCCCcc-chhhcCCCCCCEEccccc
Q 048810 260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IA--KVGQLKKLEVLSFRDSDIEQL-PLEIGQLRRLQLLDLSNC 335 (582)
Q Consensus 260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 335 (582)
++++++++.++.+|..+.. +|++|++++|.++. ++ .++.+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~- 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE- 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-
Confidence 4555555555555554433 55555555555555 22 255555555555555555544 34455555555555555
Q ss_pred ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccc
Q 048810 336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA 394 (582)
Q Consensus 336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 394 (582)
+.+..+++..++.+++|++|++++|.+... .+..+..+++|+.|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCV--------MPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEE--------CTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCee--------CHHHhhcCCCCCEEEeCCCCc
Confidence 344454444455555555555555544333 233445555555555555443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=6.6e-13 Score=115.31 Aligned_cols=102 Identities=26% Similarity=0.369 Sum_probs=48.4
Q ss_pred cCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccc--hhhcCCCCCCE
Q 048810 254 EGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLP--LEIGQLRRLQL 329 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~ 329 (582)
..+++|++|++++|.++.+ ..++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| ..++.+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 3444555555555544444 344445555555555555444 223333555555555555554433 44455555555
Q ss_pred EcccccccccccCc---ccccCCCcccEEEc
Q 048810 330 LDLSNCWTLEVIAP---NVISKLSRLEELYM 357 (582)
Q Consensus 330 L~l~~~~~l~~lp~---~~l~~l~~L~~L~l 357 (582)
|++++| .+..+|+ ..++.+++|+.|++
T Consensus 118 L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 118 LDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 555552 3444443 23445555555544
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=1.1e-12 Score=119.21 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=74.3
Q ss_pred CccEEEcCCCCCCCCChh--hhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcc
Q 048810 258 GLKVLQFPGIGSSSLPSS--LDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDL 332 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~--i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 332 (582)
.|++|++++|.++.++.. ++.+++|++|++++|.++. |..+..+++|++|++++|+++.++.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 677777777777776543 6777777777777777776 45677777777777777777766554 667777777777
Q ss_pred cccccccccCcccccCCCcccEEEcCCCccc
Q 048810 333 SNCWTLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
++ +.+..+++..++.+++|++|++++|.+.
T Consensus 110 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YD-NQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CC-CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77 4555554445777778888887777654
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=2.4e-12 Score=116.84 Aligned_cols=124 Identities=23% Similarity=0.279 Sum_probs=103.4
Q ss_pred cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEccccccc
Q 048810 260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWT 337 (582)
Q Consensus 260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 337 (582)
++++++++.++.+|..+. .+|++|++++|.++. |..+..+++|++|++++|.++.++. .+..+++|++|++++ +.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence 688999999999997664 589999999999988 7889999999999999999998875 488899999999999 57
Q ss_pred ccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccc
Q 048810 338 LEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA 394 (582)
Q Consensus 338 l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 394 (582)
+..+++..+..+++|++|++++|.+... ....+..+++|+.|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVV--------PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBC--------CTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCee--------ChhhhhcCccccEEEeCCCCe
Confidence 8888877788999999999998876544 233567788888888887754
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.6e-12 Score=116.36 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=59.8
Q ss_pred CccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccc-cCCCCCccEEEeeCCCCCccch--hhcCCCCCCEEccc
Q 048810 258 GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAK-VGQLKKLEVLSFRDSDIEQLPL--EIGQLRRLQLLDLS 333 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~ 333 (582)
+|++|++++|.++.+ ..++.+++|++|++++|.++. ++. +..+++|++|++++|.+..+|. .++.+++|++|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 666666666666555 345566666666666666655 323 3556666666666666666655 55666666666666
Q ss_pred ccccccccCcc---cccCCCcccEEEcCCCc
Q 048810 334 NCWTLEVIAPN---VISKLSRLEELYMGNSF 361 (582)
Q Consensus 334 ~~~~l~~lp~~---~l~~l~~L~~L~l~~~~ 361 (582)
+ +.+..+|.. .++.+++|+.|++++|.
T Consensus 122 ~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 122 R-NPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp S-SGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred C-CCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6 344455542 24566666666666554
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=1.1e-12 Score=143.81 Aligned_cols=110 Identities=27% Similarity=0.342 Sum_probs=95.3
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEE
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVL 307 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L 307 (582)
.+++|+.|+++++ ....++..+| .+++|++|+|++|.++.+|..++.|++|++|+|++|.++. |..++.|++|++|
T Consensus 222 ~l~~L~~L~Ls~n--~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNL--QIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTS--CCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCC--CCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 7788999999987 4557887775 7899999999999999999999999999999999999888 7889999999999
Q ss_pred EeeCCCCCccchhhcCCCCCCEEcccccccccccC
Q 048810 308 SFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIA 342 (582)
Q Consensus 308 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 342 (582)
+|++|.++.+|..++.+++|++|++++| .+...+
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~ 332 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQF 332 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHH
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCC
Confidence 9999999999998999999999999995 454433
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=1.6e-11 Score=109.90 Aligned_cols=105 Identities=21% Similarity=0.382 Sum_probs=61.6
Q ss_pred CCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcc
Q 048810 257 EGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDL 332 (582)
Q Consensus 257 ~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 332 (582)
++|++|++++|.++.+|. .++.+++|++|++++|.++. + ..+..+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 455666666666655543 34556666666666666655 2 2345666666666666666655544 355666666666
Q ss_pred cccccccccCcccccCCCcccEEEcCCCcc
Q 048810 333 SNCWTLEVIAPNVISKLSRLEELYMGNSFK 362 (582)
Q Consensus 333 ~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~ 362 (582)
++ +.++.+|+..+..+++|++|++++|.+
T Consensus 108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 66 345556655455566666666666654
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=9.5e-12 Score=132.04 Aligned_cols=122 Identities=24% Similarity=0.246 Sum_probs=104.6
Q ss_pred CccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEcccccc
Q 048810 258 GLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNCW 336 (582)
Q Consensus 258 ~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 336 (582)
.|++|++++|.++.+|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|++|++++ +
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-N 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-S
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-C
Confidence 58899999999999997 9999999999999999999 889999999999999999999999 899999999999999 5
Q ss_pred ccccc--CcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEE
Q 048810 337 TLEVI--APNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLE 388 (582)
Q Consensus 337 ~l~~l--p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 388 (582)
.++.+ |.. ++.+++|+.|++++|.+... .......+..+++|+.|+
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~-----~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE-----EGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGGGGS-----SSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcCCCC-----ccHHHHHHHHCcccCccC
Confidence 67777 554 89999999999999986543 111122234478888875
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=1.8e-11 Score=109.49 Aligned_cols=126 Identities=21% Similarity=0.302 Sum_probs=104.3
Q ss_pred ccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEccccc
Q 048810 259 LKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNC 335 (582)
Q Consensus 259 Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 335 (582)
.+.++++++.++.+|..+. .+|++|++++|+++. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~- 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE- 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-
Confidence 5788999999999986554 689999999999988 4 4578999999999999999988876 58899999999999
Q ss_pred ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810 336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE 395 (582)
Q Consensus 336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 395 (582)
+.++.+|+..++.+++|++|++++|.+... ....+..+++|+.|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSV--------PDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEe--------CHHHhcCCcccCEEEecCCCee
Confidence 578888887678899999999999876533 2234577888999998888654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=1.3e-13 Score=126.01 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=91.6
Q ss_pred HhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC-ccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEE
Q 048810 252 FFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLL 330 (582)
Q Consensus 252 ~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 330 (582)
.|..+++|++|++++|.++.+| .++.+++|++|++++|.++. |..+..+++|++|++++|.++.+| .++.+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4577888888888888888777 78888888888888888777 566666778888888888888776 57778888888
Q ss_pred cccccccccccCc-ccccCCCcccEEEcCCCccccccccCC---CccchhhccCCCCccEEE
Q 048810 331 DLSNCWTLEVIAP-NVISKLSRLEELYMGNSFKRWEKVEGG---SNASLVELNGLSKLTTLE 388 (582)
Q Consensus 331 ~l~~~~~l~~lp~-~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~ 388 (582)
++++ +.+..++. ..+..+++|++|++++|.+... .... .......+..+++|+.|+
T Consensus 121 ~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYND-YKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHH-HHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccc-cccccchHHHHHHHHHhCCCcEEEC
Confidence 8887 45665553 2367788888888887765333 0000 000112256667777665
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=4.2e-11 Score=106.61 Aligned_cols=101 Identities=22% Similarity=0.371 Sum_probs=80.2
Q ss_pred cEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchhh-cCCCCCCEEcccccc
Q 048810 260 KVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLEI-GQLRRLQLLDLSNCW 336 (582)
Q Consensus 260 r~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~ 336 (582)
+.++++++.++.+|..+. .+|++|++++|.++. +..+..+++|++|++++|+++.+|..+ ..+++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 678888888888887664 688888888888887 456788888888888888888887764 7788888888888 5
Q ss_pred cccccCcccccCCCcccEEEcCCCccc
Q 048810 337 TLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 337 ~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
.+..+|+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 677777766778888888888887654
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=4.7e-11 Score=105.90 Aligned_cols=102 Identities=20% Similarity=0.304 Sum_probs=83.8
Q ss_pred ccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEccccc
Q 048810 259 LKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNC 335 (582)
Q Consensus 259 Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 335 (582)
.+.++++++.++.+|..+. .+|++|++++|.++. +..+..+++|++|++++|+++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4688888888888887664 788899999998888 46688888999999999988888876 47888899999988
Q ss_pred ccccccCcccccCCCcccEEEcCCCccc
Q 048810 336 WTLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
+.+..+|+..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5778888766788888888888888654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=5e-13 Score=122.12 Aligned_cols=143 Identities=19% Similarity=0.201 Sum_probs=114.6
Q ss_pred CccEEEcCCC--CCCCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCccchhhcCCCCCCEEccccc
Q 048810 258 GLKVLQFPGI--GSSSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQLPLEIGQLRRLQLLDLSNC 335 (582)
Q Consensus 258 ~Lr~L~l~~~--~~~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 335 (582)
.|+.+.+.++ .++.+|..++.+++|++|++++|.++.++.+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~- 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY- 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-
Confidence 3444444443 4556677999999999999999999994499999999999999999999999888899999999999
Q ss_pred ccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccccCCcc-----------c-cc
Q 048810 336 WTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAEILPQD-----------L-VS 403 (582)
Q Consensus 336 ~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~-~~ 403 (582)
+.++.+|. ++.+++|++|++++|.+... ..+..+..+++|+.|++++|.+...+.. + .+
T Consensus 103 N~l~~l~~--~~~l~~L~~L~l~~N~i~~~-------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 103 NQIASLSG--IEKLVNLRVLYMSNNKITNW-------GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp EECCCHHH--HHHHHHSSEEEESEEECCCH-------HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CcCCcCCc--cccCCCCCEEECCCCcCCch-------hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 47788873 88999999999999876532 1235788999999999999987544221 2 66
Q ss_pred ccccEEE
Q 048810 404 VELQRYK 410 (582)
Q Consensus 404 ~~L~~L~ 410 (582)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 7777765
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=1.1e-10 Score=115.53 Aligned_cols=103 Identities=14% Similarity=-0.007 Sum_probs=74.9
Q ss_pred hhhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccc-ccccccccccccccccc
Q 048810 450 LLQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLE-TLYLIGLANLETICCSQ 528 (582)
Q Consensus 450 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~-~L~l~~~~~L~~~~~~~ 528 (582)
.+++|+.++|.++.........| ..+++|+++.+.++ ++.++.. ....+++|+ .+.+.+ +++.++...
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~----aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQR----VFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTT---TTCTTCCEEECCTT--CCEECTT----TTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred hcCCCeEEECCCCCcceecHhhh---hCCCCCCEEECCcc--cceehHH----HhhCChhccEEEEEcc--cceEEchhh
Confidence 35899999999876433333344 48999999999885 7777543 355667888 888876 788887765
Q ss_pred ccCcccCCCccEEEEecccCcccccChhHHhhhhhcceee
Q 048810 529 LREDQSFSNLRIIEVEHCNKLKHLFSFSMAKNLLWLQKVG 568 (582)
Q Consensus 529 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~ 568 (582)
|. .+++|+.+.+... +++.++.. .+.++++|+.+.
T Consensus 293 F~---~c~~L~~l~l~~n-~i~~I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 293 FM---GCDNLRYVLATGD-KITTLGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp TT---TCTTEEEEEECSS-CCCEECTT-TTCTTCCCCEEE
T ss_pred hh---CCccCCEEEeCCC-ccCccchh-hhcCCcchhhhc
Confidence 54 7889999998765 68888763 446777777765
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=4.4e-10 Score=99.94 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=65.8
Q ss_pred EEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC-cc-ccCCCCCccEEEeeC
Q 048810 235 LFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD-IA-KVGQLKKLEVLSFRD 311 (582)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~l~~ 311 (582)
.++++++ ....+|..+ .++|++|++++|.++.+ |..++.+++|++|+|++|+++. |. .+..+++|++|++++
T Consensus 16 ~l~~~~n--~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 16 LVNCQNI--RLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp EEECCSS--CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEeCCC--CCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4444443 333444433 25677777777777765 4567777777777777777777 33 356777777777777
Q ss_pred CCCCccchh-hcCCCCCCEEcccccccccccC
Q 048810 312 SDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIA 342 (582)
Q Consensus 312 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 342 (582)
|.++.+|.. +..+++|++|++++| .+...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSS-CBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCC-Cccccc
Confidence 777777765 677777777777773 444433
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=2.8e-10 Score=112.76 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=57.8
Q ss_pred CCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCccc-EEEcCCCccccccccCCCccchhhc
Q 048810 301 LKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLE-ELYMGNSFKRWEKVEGGSNASLVEL 378 (582)
Q Consensus 301 l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l 378 (582)
+.+|+.+++++|+++.+|.. +..+.+|+.+++.++ +..++...|..+++|+ .+.+... +... ....+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~-l~~I--------~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPAS-VTAI--------EFGAF 293 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTT-CCEE--------CTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEccc-ceEE--------chhhh
Confidence 45666666666666666654 555666666666652 6666666666666666 6666552 2111 23455
Q ss_pred cCCCCccEEEEEecccccCCccc--ccccccEE
Q 048810 379 NGLSKLTTLEIHVRYAEILPQDL--VSVELQRY 409 (582)
Q Consensus 379 ~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L 409 (582)
.++++|+.+++..+.+..++... .+++|+.+
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred hCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 66666666666666666665543 45555554
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=1e-09 Score=97.25 Aligned_cols=79 Identities=28% Similarity=0.361 Sum_probs=53.2
Q ss_pred CCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC-c-cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcc
Q 048810 257 EGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDL 332 (582)
Q Consensus 257 ~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 332 (582)
+.|++|++++|.++.+ |..++.+++|++|++++|+++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 5666777777777665 4456677777777777777766 3 3356677777777777777766654 666777777777
Q ss_pred ccc
Q 048810 333 SNC 335 (582)
Q Consensus 333 ~~~ 335 (582)
++|
T Consensus 110 ~~N 112 (170)
T 3g39_A 110 LNN 112 (170)
T ss_dssp CSS
T ss_pred CCC
Confidence 763
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=9.6e-08 Score=96.68 Aligned_cols=262 Identities=11% Similarity=0.097 Sum_probs=158.1
Q ss_pred CCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCCh-hhhcccCccEEEcCCCCCCC--ccccCCCCCccE
Q 048810 230 CPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEV 306 (582)
Q Consensus 230 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~ 306 (582)
+..++.+.+.. ....++...|.++ +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .++. ...+.++.+|+.
T Consensus 112 ~~~l~~i~ip~---~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN---SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT---TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECC---ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 35566666653 4556777778876 6999998766 655553 4555 3689998876 5555 467888999999
Q ss_pred EEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccE
Q 048810 307 LSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTT 386 (582)
Q Consensus 307 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 386 (582)
+++..++++.+|...-...+|+.+.+.. .+..++...|..+++|+.+.+..+.. .. ....+.+ .+|+.
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~-~I--------~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVS-TI--------GQEAFRE-SGITT 252 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCC-EE--------CTTTTTT-CCCSE
T ss_pred eecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCcc-Cc--------ccccccc-CCccE
Confidence 9999999999988766678999999875 47888888888999999999876521 11 1223444 67888
Q ss_pred EEEEecccccCCccc--ccccccEEEEEeccccccccccccccccceecccceeehccccchHHHhhhcccceeeccccC
Q 048810 387 LEIHVRYAEILPQDL--VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKSVSILLRNPGMRMLLQRTEDLWLETLEG 464 (582)
Q Consensus 387 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~i~~~~~~L~~L~L~~~~~ 464 (582)
+.+ .+.+..++... .+++|+.+.+..+... .... ..+. +..+.. +++|+.+.|.+.
T Consensus 253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~------~~~~--------~~I~----~~aF~~-c~~L~~l~l~~~-- 310 (401)
T 4fdw_A 253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN------DDPE--------AMIH----PYCLEG-CPKLARFEIPES-- 310 (401)
T ss_dssp EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC------CCTT--------CEEC----TTTTTT-CTTCCEECCCTT--
T ss_pred EEe-CCCccEEChhHhhCCCCCCEEEeCCcccc------CCcc--------cEEC----HHHhhC-CccCCeEEeCCc--
Confidence 888 45566665544 6777887776433220 0000 0000 111111 356677766532
Q ss_pred cccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccC-CCccEEEE
Q 048810 465 VPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSF-SNLRIIEV 543 (582)
Q Consensus 465 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~-~~L~~L~l 543 (582)
++.+.... ...+++|+.+.|.. .++.+... ....+ +|+.+.+.+ +.+..+....+. .+ .+++.|.+
T Consensus 311 i~~I~~~a--F~~c~~L~~l~lp~--~l~~I~~~----aF~~~-~L~~l~l~~-n~~~~l~~~~F~---~~~~~l~~l~v 377 (401)
T 4fdw_A 311 IRILGQGL--LGGNRKVTQLTIPA--NVTQINFS----AFNNT-GIKEVKVEG-TTPPQVFEKVWY---GFPDDITVIRV 377 (401)
T ss_dssp CCEECTTT--TTTCCSCCEEEECT--TCCEECTT----SSSSS-CCCEEEECC-SSCCBCCCSSCC---CSCTTCCEEEE
T ss_pred eEEEhhhh--hcCCCCccEEEECc--cccEEcHH----hCCCC-CCCEEEEcC-CCCccccccccc---CCCCCccEEEe
Confidence 33332211 23667777777744 35555322 22333 677777765 344444433332 22 24555555
Q ss_pred ec
Q 048810 544 EH 545 (582)
Q Consensus 544 ~~ 545 (582)
-.
T Consensus 378 p~ 379 (401)
T 4fdw_A 378 PA 379 (401)
T ss_dssp CG
T ss_pred CH
Confidence 43
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=6.7e-09 Score=103.59 Aligned_cols=96 Identities=24% Similarity=0.230 Sum_probs=46.7
Q ss_pred EcCCC-CCCCCChhhhcccCccEEEcCC-CCCCC-c-cccCCCCCccEEEeeCCCCCccch-hhcCCCCCCEEccccccc
Q 048810 263 QFPGI-GSSSLPSSLDRLINLQTLCLDG-CRLKD-I-AKVGQLKKLEVLSFRDSDIEQLPL-EIGQLRRLQLLDLSNCWT 337 (582)
Q Consensus 263 ~l~~~-~~~~lp~~i~~L~~L~~L~L~~-~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 337 (582)
+.+++ .++.+|. ++.+.+|++|+|++ |.++. + ..++.+.+|++|+|++|+++.+|+ .++++++|++|+|++ +.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cc
Confidence 44444 4555555 55555555555553 45544 2 335555555555555555554433 235555555555555 34
Q ss_pred ccccCcccccCCCcccEEEcCCCc
Q 048810 338 LEVIAPNVISKLSRLEELYMGNSF 361 (582)
Q Consensus 338 l~~lp~~~l~~l~~L~~L~l~~~~ 361 (582)
+..+|+..+..++ |+.|++.+|.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSC
T ss_pred cceeCHHHcccCC-ceEEEeeCCC
Confidence 4455544333333 5555555544
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=6.3e-10 Score=111.64 Aligned_cols=167 Identities=12% Similarity=0.055 Sum_probs=86.4
Q ss_pred HhhccCcEEEEecCCCCcCCCCCCCCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCC--CChhhhcccCc
Q 048810 205 ETIRKDPIAISLPYRGDQVLPQRMRCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLDRLINL 282 (582)
Q Consensus 205 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~L~~L 282 (582)
......++.+++++|.+.... ...+...+.....+|++|+|++|.++. +..-...+.+|
T Consensus 68 ~~~~~~L~~L~Ls~n~l~~~~-------------------~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L 128 (372)
T 3un9_A 68 AEVLSSLRQLNLAGVRMTPVK-------------------CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128 (372)
T ss_dssp HHHHTTCCEEECTTSCCCHHH-------------------HHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTE
T ss_pred HHHHhhCCEEEecCCCCCHHH-------------------HHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhc
Confidence 344567888888887764211 011111111123566666666666543 11222334566
Q ss_pred cEEEcCCCCCCC--cccc-----CCCCCccEEEeeCCCCCc-----cchhhcCCCCCCEEcccccccccccC----cccc
Q 048810 283 QTLCLDGCRLKD--IAKV-----GQLKKLEVLSFRDSDIEQ-----LPLEIGQLRRLQLLDLSNCWTLEVIA----PNVI 346 (582)
Q Consensus 283 ~~L~L~~~~l~~--~~~~-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp----~~~l 346 (582)
++|+|++|.+.. ...+ ...++|++|++++|.++. ++..+..+++|++|++++| .++... ...+
T Consensus 129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L 207 (372)
T 3un9_A 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQL 207 (372)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHG
T ss_pred cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHH
Confidence 666666666654 2222 234566666766666652 4444556666777776663 343321 1124
Q ss_pred cCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEecccc
Q 048810 347 SKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYAE 395 (582)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 395 (582)
...++|++|++++|.+... ........+...++|++|++++|.+.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~----g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDT----AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GGCSCCCEEECCSSCCCHH----HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCeEECCCCCCCHH----HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 4556677777766654322 00112233445566777777766654
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=2.7e-07 Score=93.44 Aligned_cols=254 Identities=13% Similarity=0.132 Sum_probs=158.4
Q ss_pred cCcEEEEecCCCCcCCCCCC-CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEE
Q 048810 209 KDPIAISLPYRGDQVLPQRM-RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLC 286 (582)
Q Consensus 209 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~ 286 (582)
..++.+.+.. .+..++... .-.+|+.+.+..+ ...+....|.++ .|+.+.+.+ .++.++ ..+.+|.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~---i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG---LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT---CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC---ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 3445555543 344443322 2237888887643 667777778775 699999886 565554 5688899999999
Q ss_pred cCCCCCCC-ccccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCcccc
Q 048810 287 LDGCRLKD-IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKRW 364 (582)
Q Consensus 287 L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~~ 364 (582)
+..+.++. +.......+|+.+.+.. .++.++.. +.++++|+.+.+.. .+..++...|.. .+|+.+.+..+.. .
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~i~-~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNGVT-N 261 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETTCC-E
T ss_pred cCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCCcc-E
Confidence 99888887 43333368899999874 47777654 66788999999876 367777776777 7899988854321 1
Q ss_pred ccccCCCccchhhccCCCCccEEEEEecccc-----cCCccc--ccccccEEEEEeccccccccccccccccceecccce
Q 048810 365 EKVEGGSNASLVELNGLSKLTTLEIHVRYAE-----ILPQDL--VSVELQRYKMFIGEARGRWFVKSETSRLMKLERLKS 437 (582)
Q Consensus 365 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~l~~~~~ 437 (582)
. ....+.++++|+.+.+..+... .++... .+++|+.+.+.. .+. .
T Consensus 262 I--------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~------------~i~--------~ 313 (401)
T 4fdw_A 262 I--------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE------------SIR--------I 313 (401)
T ss_dssp E--------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT------------TCC--------E
T ss_pred E--------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC------------ceE--------E
Confidence 1 2456778889999999876654 344433 666777765420 000 0
Q ss_pred eehccccchHHHhhhcccceeeccccCccccc-ccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCc-ccccccc
Q 048810 438 VSILLRNPGMRMLLQRTEDLWLETLEGVPSVV-HELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFP-LLETLYL 515 (582)
Q Consensus 438 ~~~l~~~~~i~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l 515 (582)
+. ...+.. +++|+.+.|..+ ++.+. ..| ..+ +|+.+.+.++. +..+... ...+++ .++.|.+
T Consensus 314 I~----~~aF~~-c~~L~~l~lp~~--l~~I~~~aF---~~~-~L~~l~l~~n~-~~~l~~~----~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 314 LG----QGLLGG-NRKVTQLTIPAN--VTQINFSAF---NNT-GIKEVKVEGTT-PPQVFEK----VWYGFPDDITVIRV 377 (401)
T ss_dssp EC----TTTTTT-CCSCCEEEECTT--CCEECTTSS---SSS-CCCEEEECCSS-CCBCCCS----SCCCSCTTCCEEEE
T ss_pred Eh----hhhhcC-CCCccEEEECcc--ccEEcHHhC---CCC-CCCEEEEcCCC-Ccccccc----cccCCCCCccEEEe
Confidence 10 111222 367888888543 33332 233 366 89999998863 3333322 223333 5666666
Q ss_pred cc
Q 048810 516 IG 517 (582)
Q Consensus 516 ~~ 517 (582)
..
T Consensus 378 p~ 379 (401)
T 4fdw_A 378 PA 379 (401)
T ss_dssp CG
T ss_pred CH
Confidence 44
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=3e-09 Score=106.74 Aligned_cols=111 Identities=16% Similarity=0.073 Sum_probs=73.7
Q ss_pred cCCCCccEEEcCCCCCCCCC-hhh-----hcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCC-----c
Q 048810 254 EGMEGLKVLQFPGIGSSSLP-SSL-----DRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIE-----Q 316 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp-~~i-----~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~-----~ 316 (582)
..+++|+.|+|++|.++... ..+ ....+|++|+|++|.++. . ..+...++|++|++++|.+. .
T Consensus 123 ~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 123 PVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp HHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred HHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence 34457888888888775421 222 235678888888888765 2 33467788888888888776 3
Q ss_pred cchhhcCCCCCCEEcccccccccccCcc----cccCCCcccEEEcCCCccccc
Q 048810 317 LPLEIGQLRRLQLLDLSNCWTLEVIAPN----VISKLSRLEELYMGNSFKRWE 365 (582)
Q Consensus 317 lp~~i~~l~~L~~L~l~~~~~l~~lp~~----~l~~l~~L~~L~l~~~~~~~~ 365 (582)
++..+...++|++|++++| .++..... .+...++|++|++++|.+...
T Consensus 203 L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 4556677788888888885 44432211 144568888888888876443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=3.2e-08 Score=98.65 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=43.6
Q ss_pred EEecCC-CCcCCCCCCCCCCccEEEeec-cCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCC
Q 048810 214 ISLPYR-GDQVLPQRMRCPRLGLFLLHT-IGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGC 290 (582)
Q Consensus 214 l~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~ 290 (582)
++.+++ .+..+|....+++|+.|++++ | ....++...|.++++|++|+|++|.++.+| ..+++|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQ--HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCS--SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCC--CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 444444411344455555543 3 333444444444555555555555444432 23444445555555555
Q ss_pred CCCC-ccccCCCCCccEEEeeCCCCC
Q 048810 291 RLKD-IAKVGQLKKLEVLSFRDSDIE 315 (582)
Q Consensus 291 ~l~~-~~~~~~l~~L~~L~l~~~~l~ 315 (582)
+++. |+.+.....|++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 4444 322222222444444444443
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=2.6e-06 Score=86.23 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=37.0
Q ss_pred cccCCCCCccEEEeeCCCCCccchh-hcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 296 AKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 296 ~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
..+.++.+|+.+.+..+ +..++.. +..+.+|+.+.+.. .++.++...+..+..|+.+.+..+
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCC
Confidence 34556677777777543 3444433 45566777777654 255565555666777776665543
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=1.3e-06 Score=88.64 Aligned_cols=123 Identities=12% Similarity=0.240 Sum_probs=69.2
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC--ccccCCCCCcc
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLE 305 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~ 305 (582)
+|.+|+.+.+.. ....+....|.++.+|+.+++.++ ++.++ ..+.++.+|+.+.+..+ +.. ...+.....+.
T Consensus 69 ~c~~L~~i~lp~---~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 69 GCRKVTEIKIPS---TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TCTTEEEEECCT---TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred CCCCceEEEeCC---CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 566677776643 345566666777777777777543 33333 34555666665544332 111 22333333222
Q ss_pred EEEeeCCCCCccc-hhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 306 VLSFRDSDIEQLP-LEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 306 ~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
.... ..+..+. ..+.++.+|+.+.+.+ .+..++...+..+.+|+.+.+..+
T Consensus 144 ~~~~--~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 144 ITIP--EGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp EECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccC--ccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC
Confidence 2211 1222232 2356778888888865 356677777888888888887654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=1.6e-07 Score=93.36 Aligned_cols=138 Identities=19% Similarity=0.240 Sum_probs=62.7
Q ss_pred HHhcCCCCccEEEcCCCCCCCCChhhhcccCccEEEcCCCCCCC--ccccC--CCCCccEEEeeCC--------CCCccc
Q 048810 251 HFFEGMEGLKVLQFPGIGSSSLPSSLDRLINLQTLCLDGCRLKD--IAKVG--QLKKLEVLSFRDS--------DIEQLP 318 (582)
Q Consensus 251 ~~~~~l~~Lr~L~l~~~~~~~lp~~i~~L~~L~~L~L~~~~l~~--~~~~~--~l~~L~~L~l~~~--------~l~~lp 318 (582)
.++..+++|+.|+++++.-..+|. + .+++|++|++..|.+.. ...+. .+++|++|+|+.+ .+..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 344566666666666653223333 2 25666666666666544 33332 5666666666421 011121
Q ss_pred hhh--cCCCCCCEEcccccccccccCccc--ccCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEeccc
Q 048810 319 LEI--GQLRRLQLLDLSNCWTLEVIAPNV--ISKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHVRYA 394 (582)
Q Consensus 319 ~~i--~~l~~L~~L~l~~~~~l~~lp~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 394 (582)
..+ +.+++|++|++.+|......+... .+.+++|++|+++.|.+... ........+..+++|+.|+++.|.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~----G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE----GARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH----HHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH----HHHHHHhhcccCCcceEEECCCCcC
Confidence 111 235566666665543221111110 12355666666655543221 0001122233455566666655543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=1.1e-06 Score=76.76 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=53.1
Q ss_pred CCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCC-CCC--ccccCCC----CCccEEEeeCC-CCCc-cchhhcCCCC
Q 048810 257 EGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCR-LKD--IAKVGQL----KKLEVLSFRDS-DIEQ-LPLEIGQLRR 326 (582)
Q Consensus 257 ~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~-l~~--~~~~~~l----~~L~~L~l~~~-~l~~-lp~~i~~l~~ 326 (582)
..|+.||++++.++.. -..+..+++|++|+|++|. +++ ...+..+ ++|++|++++| +++. =-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4678888888776541 2345677777777777774 555 5666654 36777777776 4551 1123556677
Q ss_pred CCEEcccccccccc
Q 048810 327 LQLLDLSNCWTLEV 340 (582)
Q Consensus 327 L~~L~l~~~~~l~~ 340 (582)
|++|++++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777766654
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=1.8e-06 Score=85.66 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=96.8
Q ss_pred cCCCCccEEEcCCCCC----------CCCChhhhcccCccEEEcCCCCCCCccccCCCCCccEEEeeCCCCCc-cchhhc
Q 048810 254 EGMEGLKVLQFPGIGS----------SSLPSSLDRLINLQTLCLDGCRLKDIAKVGQLKKLEVLSFRDSDIEQ-LPLEIG 322 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~----------~~lp~~i~~L~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~i~ 322 (582)
..+++|+.|.+.+... ..++..+..+++|+.|++++|.-...+.+. +++|++|++..|.+.. ....+.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence 3456777777755432 135566778899999999988322222243 8899999999887652 222333
Q ss_pred --CCCCCCEEcccccc-------cccccCcccc--cCCCcccEEEcCCCccccccccCCCccchhhccCCCCccEEEEEe
Q 048810 323 --QLRRLQLLDLSNCW-------TLEVIAPNVI--SKLSRLEELYMGNSFKRWEKVEGGSNASLVELNGLSKLTTLEIHV 391 (582)
Q Consensus 323 --~l~~L~~L~l~~~~-------~l~~lp~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 391 (582)
.+++|++|+++.+. .+..+.+. + +.+++|++|++.+|.+... ........+.+++|+.|+++.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~~i~~~-----~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDAEEQNV-----VVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESCTTHHH-----HHHHHHHCSSGGGCSEEECCS
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCCCCchH-----HHHHHHhCccCCCCCEEECCC
Confidence 78999999985321 12222221 2 3578999999988765432 001122234578999999998
Q ss_pred ccccc-----CCccc-ccccccEEEEEecc
Q 048810 392 RYAEI-----LPQDL-VSVELQRYKMFIGE 415 (582)
Q Consensus 392 ~~~~~-----~~~~~-~~~~L~~L~l~~~~ 415 (582)
|.+.. ++..+ .+++|+.|+++.+.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 87654 23332 56788888775443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=5.5e-07 Score=78.57 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=55.3
Q ss_pred hcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCC----CCcccccccccccccccccccc
Q 048810 452 QRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCE----VFPLLETLYLIGLANLETICCS 527 (582)
Q Consensus 452 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~L~~~~~~ 527 (582)
.+|+.|++++|. +++... ..+..+++|++|+|++|..++... ..... ..++|+.|++++|.++++-.-.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL--~~L~~~~~L~~L~L~~C~~ItD~g----L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF--DHMEGLQYVEKIRLCKCHYIEDGC----LERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG--GGGTTCSCCCEEEEESCTTCCHHH----HHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHH--HHhcCCCCCCEEEeCCCCccCHHH----HHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 367888888876 443211 114478888888888887554321 00111 1356888888888777654332
Q ss_pred cccCcccCCCccEEEEecccCccc
Q 048810 528 QLREDQSFSNLRIIEVEHCNKLKH 551 (582)
Q Consensus 528 ~~~~~~~~~~L~~L~l~~c~~L~~ 551 (582)
. +..+++|++|++++|++++.
T Consensus 134 ~---L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 A---LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp H---GGGCTTCCEEEEESCTTCCC
T ss_pred H---HhcCCCCCEEECCCCCCCCc
Confidence 2 44677888888888877765
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.08 E-value=2.2e-06 Score=76.67 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred HHhcCCCCccEEEcCCC-CCCC-----CChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCCc--
Q 048810 251 HFFEGMEGLKVLQFPGI-GSSS-----LPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIEQ-- 316 (582)
Q Consensus 251 ~~~~~l~~Lr~L~l~~~-~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~-- 316 (582)
..+...+.|+.|+|++| .++. +...+...++|++|+|++|.+.. . ..+...++|++|++++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34567888888888888 7753 44556667788888888888765 2 334455778888888887772
Q ss_pred ---cchhhcCCCCCCEEcc--cccccccccCc----ccccCCCcccEEEcCCCcc
Q 048810 317 ---LPLEIGQLRRLQLLDL--SNCWTLEVIAP----NVISKLSRLEELYMGNSFK 362 (582)
Q Consensus 317 ---lp~~i~~l~~L~~L~l--~~~~~l~~lp~----~~l~~l~~L~~L~l~~~~~ 362 (582)
+...+...++|++|++ ++ +.++.-.. ..+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4555666677777777 44 33433110 1134446666666666653
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=0.00027 Score=71.30 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=45.1
Q ss_pred CCCCCcEEEEeecCCceeeecccccccCCCCcccccccccccccccccccccccCcccCCCccEEEEecccCcccccChh
Q 048810 477 GFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLREDQSFSNLRIIEVEHCNKLKHLFSFS 556 (582)
Q Consensus 477 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 556 (582)
.+++|+.+.+.. .++.++.. ....+.+|+.+.|.+ +++.+....|. .+.+|+++.|-. +++.++..
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~aF~---~C~~L~~i~ip~--sv~~I~~~- 351 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPES----VFAGCISLKSIDIPE--GITQILDDAFA---GCEQLERIAIPS--SVTKIPES- 351 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEECCT--TCCEECTTTTT---TCTTCCEEEECT--TCCBCCGG-
T ss_pred cccccccccCCC--cccccCce----eecCCCCcCEEEeCC--cccEehHhHhh---CCCCCCEEEECc--ccCEEhHh-
Confidence 566677766643 34455322 233445666666643 45556554443 556677777643 35555542
Q ss_pred HHhhhhhcceeeecc
Q 048810 557 MAKNLLWLQKVGVEE 571 (582)
Q Consensus 557 ~~~~l~~L~~L~i~~ 571 (582)
...++++|+.+++.+
T Consensus 352 aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 352 AFSNCTALNNIEYSG 366 (394)
T ss_dssp GGTTCTTCCEEEESS
T ss_pred HhhCCCCCCEEEECC
Confidence 345667777776654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=9.3e-06 Score=76.41 Aligned_cols=78 Identities=26% Similarity=0.293 Sum_probs=56.9
Q ss_pred cCCCCccEEEcCCCCCCCCC---hhhhcccCccEEEcCCCCCCCccccCCCC--CccEEEeeCCCCCc-cc-------hh
Q 048810 254 EGMEGLKVLQFPGIGSSSLP---SSLDRLINLQTLCLDGCRLKDIAKVGQLK--KLEVLSFRDSDIEQ-LP-------LE 320 (582)
Q Consensus 254 ~~l~~Lr~L~l~~~~~~~lp---~~i~~L~~L~~L~L~~~~l~~~~~~~~l~--~L~~L~l~~~~l~~-lp-------~~ 320 (582)
..+++|+.|+|++|.++.++ ..++.+++|++|+|++|.+++...+..+. +|++|++++|.+.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 56788899999998887644 56678888888888888888754444444 88888888887763 33 12
Q ss_pred hcCCCCCCEEc
Q 048810 321 IGQLRRLQLLD 331 (582)
Q Consensus 321 i~~l~~L~~L~ 331 (582)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55677777775
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.89 E-value=8.9e-06 Score=72.63 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=66.5
Q ss_pred HhcCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC------ccccCCCCCccEEEe--eCCCCC---
Q 048810 252 FFEGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD------IAKVGQLKKLEVLSF--RDSDIE--- 315 (582)
Q Consensus 252 ~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l--~~~~l~--- 315 (582)
.+...+.|++|+|++|.++. +...+...++|++|+|++|.+.. ...+...++|++|++ ++|.+.
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 34667899999999998864 45566677889999999999876 255677788999999 778887
Q ss_pred --ccchhhcCCCCCCEEccccc
Q 048810 316 --QLPLEIGQLRRLQLLDLSNC 335 (582)
Q Consensus 316 --~lp~~i~~l~~L~~L~l~~~ 335 (582)
.+...+...++|++|++++|
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCcCEEeccCC
Confidence 25566777789999999885
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=9.5e-06 Score=76.34 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=47.7
Q ss_pred hcccCccEEEcCCCCCCCc----cccCCCCCccEEEeeCCCCCccchhhcCCC--CCCEEcccccccccccCc------c
Q 048810 277 DRLINLQTLCLDGCRLKDI----AKVGQLKKLEVLSFRDSDIEQLPLEIGQLR--RLQLLDLSNCWTLEVIAP------N 344 (582)
Q Consensus 277 ~~L~~L~~L~L~~~~l~~~----~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~l~~lp~------~ 344 (582)
.++++|++|+|++|+++.+ ..+..+++|++|+|++|.++.+. .+..+. +|++|++.+|.-...+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4567777788877777763 23446777777777777777552 234343 677777777443333331 1
Q ss_pred cccCCCcccEEE
Q 048810 345 VISKLSRLEELY 356 (582)
Q Consensus 345 ~l~~l~~L~~L~ 356 (582)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666665
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.54 E-value=0.0057 Score=61.49 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=53.4
Q ss_pred hhcccceeeccccCcccccccccCCCCCCCCcEEEEeecCCceeeecccccccCCCCccccccccccccccccccccccc
Q 048810 451 LQRTEDLWLETLEGVPSVVHELDDGEGFPRLKHLYVESCSEILHIVGSVRRVGCEVFPLLETLYLIGLANLETICCSQLR 530 (582)
Q Consensus 451 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~ 530 (582)
+++|+.+.+.. .++.+.... ...+.+|+.+.|.+ .++.+.+. ....+.+|+.+.|.. +++.+...+|.
T Consensus 287 c~~L~~i~l~~--~i~~I~~~a--F~~c~~L~~i~lp~--~v~~I~~~----aF~~C~~L~~i~ip~--sv~~I~~~aF~ 354 (394)
T 4gt6_A 287 CPALQDIEFSS--RITELPESV--FAGCISLKSIDIPE--GITQILDD----AFAGCEQLERIAIPS--SVTKIPESAFS 354 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTT--TTTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEEECT--TCCBCCGGGGT
T ss_pred ccccccccCCC--cccccCcee--ecCCCCcCEEEeCC--cccEehHh----HhhCCCCCCEEEECc--ccCEEhHhHhh
Confidence 36777777753 233333221 34789999999865 46666433 345567888888853 57777766554
Q ss_pred CcccCCCccEEEEecc
Q 048810 531 EDQSFSNLRIIEVEHC 546 (582)
Q Consensus 531 ~~~~~~~L~~L~l~~c 546 (582)
.+++|+.+.+.+.
T Consensus 355 ---~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 355 ---NCTALNNIEYSGS 367 (394)
T ss_dssp ---TCTTCCEEEESSC
T ss_pred ---CCCCCCEEEECCc
Confidence 7788999988764
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.35 E-value=0.0064 Score=60.70 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=64.7
Q ss_pred CCCCccEEEeeccCccccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCCCCCCC-c-cccCCCCCcc
Q 048810 229 RCPRLGLFLLHTIGLCSIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDGCRLKD-I-AKVGQLKKLE 305 (582)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~~~l~~-~-~~~~~l~~L~ 305 (582)
...+|+.+.+.. ....+++..|.++.+|+.+.+..+ ++.++ ..+.++ +|..+.+..+ ++. . ..+. ..+|+
T Consensus 44 ~~~~i~~v~ip~---~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~-~~~L~ 116 (379)
T 4h09_A 44 DRDRISEVRVNS---GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ-GTDLD 116 (379)
T ss_dssp GGGGCSEEEECT---TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT-TCCCS
T ss_pred cccCCEEEEeCC---CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceec-cCCcc
Confidence 445677776653 355677777788888888887643 44443 234444 4555555432 222 1 2222 23677
Q ss_pred EEEeeCCCCCccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCC
Q 048810 306 VLSFRDSDIEQLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNS 360 (582)
Q Consensus 306 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~ 360 (582)
.+.+..+ +..+....-.-.+|+.+.+.. .+..+....+....+++...+...
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred cccCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence 7777543 344443332333455554433 344444444566666766665543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.62 E-value=0.04 Score=54.80 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=48.2
Q ss_pred HhcCCCCccEEEcCCCCCCCC-ChhhhcccCccEEEcCCCCCCC--ccccCCCCCccEEEeeCCCCCccchh-hcCCCCC
Q 048810 252 FFEGMEGLKVLQFPGIGSSSL-PSSLDRLINLQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDSDIEQLPLE-IGQLRRL 327 (582)
Q Consensus 252 ~~~~l~~Lr~L~l~~~~~~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L 327 (582)
.|..+..|+.+.+..+ +..+ ...+..+.+|+.+.+..+ ++. ...+.++.+|+.+.+.. ++..++.. +..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence 3444555555555433 1221 123444555555555433 222 23344455555555533 34444332 3445555
Q ss_pred CEEcccccccccccCcccccCCCcccEEEcC
Q 048810 328 QLLDLSNCWTLEVIAPNVISKLSRLEELYMG 358 (582)
Q Consensus 328 ~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~ 358 (582)
+.+.+.+ +.++.++...|.++.+|+.+.+.
T Consensus 289 ~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 289 TKVVMDN-SAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence 5555544 33455555555555555555554
No 165
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.57 E-value=0.26 Score=48.06 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=84.1
Q ss_pred ceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHcc-CChHHHHHHHHHHhcccccccc
Q 048810 5 KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKN-ESLDTWKDVLRQLRSSYAKEID 83 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~-~~~~~W~~~l~~l~~~~~~~~~ 83 (582)
..+++.+|+.+|+.+++...........+ .+...+|++.|+|.|+++..++..+.. .+...| ...+.
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~-------- 263 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTL-------- 263 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHH--------
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHHH--------
Confidence 47899999999999999875421111111 357889999999999999999876542 233222 11111
Q ss_pred chhhhHHHHHHHHHhhc---CchhHHHHHHHhccCCCCCccChhHHHHHhhc-cCcccccccHHHHHHHHHHHHHHHHhc
Q 048810 84 GMEKNVYLSIKLSYDFL---RSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMG-MGYFKEVYTVEEARSRVHTLIGKLKSL 159 (582)
Q Consensus 84 ~~~~~i~~~l~~sy~~L---~~~~lk~cfly~~~fp~~~~i~~~~li~~Wia-eg~~~~~~~~~~~~~~~~~~~~~L~~~ 159 (582)
+.+...+.-.+..+ +.. .+..+..+|. + .++...+.....+ .| + .+.. .+..+++.|++.
T Consensus 264 ---~~~~~~~~~~l~~l~~~~~~-~~~~l~~la~---g-~~~~~~l~~~~~~~~~---~-~~~~----~~~~~l~~L~~~ 327 (350)
T 2qen_A 264 ---EVAKGLIMGELEELRRRSPR-YVDILRAIAL---G-YNRWSLIRDYLAVKGT---K-IPEP----RLYALLENLKKM 327 (350)
T ss_dssp ---HHHHHHHHHHHHHHHHHCHH-HHHHHHHHHT---T-CCSHHHHHHHHHHTTC---C-CCHH----HHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHhCChh-HHHHHHHHHh---C-CCCHHHHHHHHHHHhC---C-CCHH----HHHHHHHHHHhC
Confidence 11111111112222 555 7888888887 2 2454555443321 11 0 1112 234467888889
Q ss_pred cccccCCCCccEEh-hhHHHHHH
Q 048810 160 CLLLDGDAEDEVKM-HDVIRVVA 181 (582)
Q Consensus 160 ~l~~~~~~~~~~~m-hdl~~~l~ 181 (582)
+++...+ +.+++ |.+++++.
T Consensus 328 gli~~~~--~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 328 NWIVEED--NTYKIADPVVATVL 348 (350)
T ss_dssp TSEEEET--TEEEESSHHHHHHH
T ss_pred CCEEecC--CEEEEecHHHHHHH
Confidence 9986542 34544 66776653
No 166
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.98 E-value=0.34 Score=47.32 Aligned_cols=146 Identities=12% Similarity=0.151 Sum_probs=83.8
Q ss_pred ceEEccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHcc-CChHHHHH-HHHHHhcccccc
Q 048810 5 KEIQIDVLSKEEALQLFKKIVG-DSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKN-ESLDTWKD-VLRQLRSSYAKE 81 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~-~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~-~~~~~W~~-~l~~l~~~~~~~ 81 (582)
..+++.+|+.+|+.+++...+. ......+. .+|+++|+|.|+++..++..+.. .+...|-. +.+..
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 270 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA------- 270 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------
Confidence 5789999999999999987542 11112221 89999999999999999987653 23333321 11110
Q ss_pred ccchhhhHHHHHH-HHHh--hcCchhHHHHHHHhccCCCCCccChhHHHHHhh-ccCcccccccHHHHHHHHHHHHHHHH
Q 048810 82 IDGMEKNVYLSIK-LSYD--FLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGM-GMGYFKEVYTVEEARSRVHTLIGKLK 157 (582)
Q Consensus 82 ~~~~~~~i~~~l~-~sy~--~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wi-aeg~~~~~~~~~~~~~~~~~~~~~L~ 157 (582)
...+...+. +.++ .+|.. .+..+..+|. +. +...+....- ..|. ..+.. ....+++.|+
T Consensus 271 ----~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~---g~--~~~~l~~~~~~~~g~---~~~~~----~~~~~L~~L~ 333 (357)
T 2fna_A 271 ----KKLILKEFENFLHGREIARKR-YLNIMRTLSK---CG--KWSDVKRALELEEGI---EISDS----EIYNYLTQLT 333 (357)
T ss_dssp ----HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT---CB--CHHHHHHHHHHHHCS---CCCHH----HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhccccccHH-HHHHHHHHHc---CC--CHHHHHHHHHHhcCC---CCCHH----HHHHHHHHHH
Confidence 011111121 1111 57776 7888888887 22 4444432110 1120 00112 2345678888
Q ss_pred hccccccCCCCccEE-hhhHHHHH
Q 048810 158 SLCLLLDGDAEDEVK-MHDVIRVV 180 (582)
Q Consensus 158 ~~~l~~~~~~~~~~~-mhdl~~~l 180 (582)
+.+++...+ +.++ .|.++++.
T Consensus 334 ~~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 334 KHSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp HTTSEEESS--SCEEESSHHHHHH
T ss_pred hCCCEEecC--CEEEecCHHHHHh
Confidence 999986553 4455 56777764
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.94 E-value=0.04 Score=45.35 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=40.6
Q ss_pred EEEeeCCCCC--ccchhhcCCCCCCEEcccccccccccCcccccCCCcccEEEcCCCccc
Q 048810 306 VLSFRDSDIE--QLPLEIGQLRRLQLLDLSNCWTLEVIAPNVISKLSRLEELYMGNSFKR 363 (582)
Q Consensus 306 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~l~~l~~L~~L~l~~~~~~ 363 (582)
.++.++.+++ .+|..+ -.+|++|+|++ +.++.+|.+.|..+++|+.|++.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence 5666777777 777532 24688888888 6788888877778888888888887653
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.91 E-value=0.035 Score=45.66 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=12.9
Q ss_pred ccEEEcCCCCCCC--ccccCCCCCccEEEeeCC
Q 048810 282 LQTLCLDGCRLKD--IAKVGQLKKLEVLSFRDS 312 (582)
Q Consensus 282 L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~ 312 (582)
|++|+|++|+++. ...+..+.+|++|+|.+|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444444444444 122333444444444444
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.87 E-value=0.023 Score=50.31 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=48.7
Q ss_pred hcCCCCccEEEcCCC-CCCC-----CChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCCC-----
Q 048810 253 FEGMEGLKVLQFPGI-GSSS-----LPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDIE----- 315 (582)
Q Consensus 253 ~~~l~~Lr~L~l~~~-~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~----- 315 (582)
...-+.|+.|+|+++ .+.. +.+.+..=..|+.|+|++|.+.+ . ..+..=+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567778888774 5542 33445555577777777777665 1 23334466777777777665
Q ss_pred ccchhhcCCCCCCEEcccc
Q 048810 316 QLPLEIGQLRRLQLLDLSN 334 (582)
Q Consensus 316 ~lp~~i~~l~~L~~L~l~~ 334 (582)
.+-..+..-+.|++|++++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 2333444445566666654
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.08 E-value=0.043 Score=48.56 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=58.7
Q ss_pred hcCCCCccEEEcCCCCCCC-----CChhhhcccCccEEEcCCCCCCC--c----cccCCCCCccEEEeeCCCC---C---
Q 048810 253 FEGMEGLKVLQFPGIGSSS-----LPSSLDRLINLQTLCLDGCRLKD--I----AKVGQLKKLEVLSFRDSDI---E--- 315 (582)
Q Consensus 253 ~~~l~~Lr~L~l~~~~~~~-----lp~~i~~L~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l---~--- 315 (582)
+..-+.|+.|+|++|.+.. +.+.+..=+.|++|+|++|.|.. . ..+..=+.|++|+++++.. .
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 4667889999999999864 45556666789999999999876 2 4566667799999986533 3
Q ss_pred --ccchhhcCCCCCCEEcccc
Q 048810 316 --QLPLEIGQLRRLQLLDLSN 334 (582)
Q Consensus 316 --~lp~~i~~l~~L~~L~l~~ 334 (582)
.+-..+..-+.|+.|+++.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHhCCCcCeEeccC
Confidence 2333445556777777765
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.38 E-value=0.25 Score=49.44 Aligned_cols=136 Identities=13% Similarity=0.041 Sum_probs=78.3
Q ss_pred EEccCCCHHHHHHHHHHhh---CC-CCCCcchHHHHHHHHHHhC------CcchHHHHHHHH-Hc-----cC---ChHHH
Q 048810 7 IQIDVLSKEEALQLFKKIV---GD-SMKTSAFQSIAVEIVGRCG------GLPVALITLAKA-LK-----NE---SLDTW 67 (582)
Q Consensus 7 ~~l~~L~~~~~~~Lf~~~a---~~-~~~~~~l~~~~~~i~~~c~------GlPLai~~~g~~-L~-----~~---~~~~W 67 (582)
+++++|+.++++++|...+ |. ...+ .+....|+++|+ |.|..+..+... .. +. +.+.+
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v 286 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV 286 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 8999999999999997654 32 1222 457888999999 999655554432 21 11 33444
Q ss_pred HHHHHHHhccccccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCC--CCCccChhHHHHHhh--c---cCcccccc
Q 048810 68 KDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFS--EGHAIPVPYLLRYGM--G---MGYFKEVY 140 (582)
Q Consensus 68 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp--~~~~i~~~~li~~Wi--a---eg~~~~~~ 140 (582)
..++..... ...+.-++..||.+ .+.++..+|.+. .+..++..++...+. + .|. .. .
T Consensus 287 ~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 350 (412)
T 1w5s_A 287 RKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KP-R 350 (412)
T ss_dssp HHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CC-C
T ss_pred HHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CC-C
Confidence 444332110 12233456778887 788888788654 234566666554442 1 111 00 0
Q ss_pred cHHHHHHHHHHHHHHHHhccccccC
Q 048810 141 TVEEARSRVHTLIGKLKSLCLLLDG 165 (582)
Q Consensus 141 ~~~~~~~~~~~~~~~L~~~~l~~~~ 165 (582)
+ ...+.+++++|++.+++...
T Consensus 351 ~----~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 351 G----YTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp C----HHHHHHHHHHHHHTTSEEEE
T ss_pred C----HHHHHHHHHHHHhCCCEEee
Confidence 1 12344578889999998643
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=80.78 E-value=2.4 Score=40.53 Aligned_cols=69 Identities=16% Similarity=0.058 Sum_probs=47.7
Q ss_pred ceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHcc--------C-ChHHHHHHHHHH
Q 048810 5 KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKN--------E-SLDTWKDVLRQL 74 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~--------~-~~~~W~~~l~~l 74 (582)
.++.+.+++.+|..+++.+.+......-+ .+....++++++|.|-.+.-+...+.. . +.+....++..+
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVRIT-EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 57899999999999999888752211111 357788999999999887766655431 1 455555555543
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=76.18 E-value=4.1 Score=36.57 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=41.1
Q ss_pred ceEEccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCcchHHHHHHHHH
Q 048810 5 KEIQIDVLSKEEALQLFKKIVGDSMKTSAFQSIAVEIVGRCGGLPVALITLAKAL 59 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L 59 (582)
..+++++++.+|.++++.+.+.......+ .+....|+++|+|.|..+..+...+
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBC-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 47899999999999999988752211111 3567899999999999888776544
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=67.26 E-value=79 Score=30.35 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=79.2
Q ss_pred ceEEccCCCHHHHHHHHHHhh---C-CCCCCcchHHHHHHHHHHhC---Ccc-hHHHHHHHHHc-----c--C-ChHHHH
Q 048810 5 KEIQIDVLSKEEALQLFKKIV---G-DSMKTSAFQSIAVEIVGRCG---GLP-VALITLAKALK-----N--E-SLDTWK 68 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a---~-~~~~~~~l~~~~~~i~~~c~---GlP-Lai~~~g~~L~-----~--~-~~~~W~ 68 (582)
..+.+++++.++..+++.+.+ + +...+++ ..+.++++++ |.| .|+.++..+.. + . +.+.++
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 478899999999999999875 3 2233344 5667777777 999 44444443332 1 2 667777
Q ss_pred HHHHHHhccccccccchhhhHHHHHHHHHhhcCchhHHHHHHHhc-cCCCCCccChhHHHHHhh----ccCcccccccHH
Q 048810 69 DVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCG-LFSEGHAIPVPYLLRYGM----GMGYFKEVYTVE 143 (582)
Q Consensus 69 ~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~-~fp~~~~i~~~~li~~Wi----aeg~~~~~~~~~ 143 (582)
.+++... ...+.-++..+|.+ -+..+...+ ++-....+...++.+... ..|. .. .
T Consensus 271 ~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--- 330 (387)
T 2v1u_A 271 SARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGL-EH-V--- 330 (387)
T ss_dssp HHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTC-CC-C---
T ss_pred HHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCC-CC-C---
Confidence 7766531 22455678889876 455554444 343223454554433321 1221 11 1
Q ss_pred HHHHHHHHHHHHHHhcccccc
Q 048810 144 EARSRVHTLIGKLKSLCLLLD 164 (582)
Q Consensus 144 ~~~~~~~~~~~~L~~~~l~~~ 164 (582)
+...+.++++.|...+++..
T Consensus 331 -~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 331 -TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp -CHHHHHHHHHHHHHTTSEEE
T ss_pred -CHHHHHHHHHHHHhCCCeEE
Confidence 12345567888888898865
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=52.70 E-value=1.3e+02 Score=28.87 Aligned_cols=135 Identities=10% Similarity=-0.043 Sum_probs=76.5
Q ss_pred ceEEccCCCHHHHHHHHHHhh---CC-CCCCcchHHHHHHHHHHhC---Ccch-HHHHHHHHH--c----cCChHHHHHH
Q 048810 5 KEIQIDVLSKEEALQLFKKIV---GD-SMKTSAFQSIAVEIVGRCG---GLPV-ALITLAKAL--K----NESLDTWKDV 70 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a---~~-~~~~~~l~~~~~~i~~~c~---GlPL-ai~~~g~~L--~----~~~~~~W~~~ 70 (582)
..+++++++.++..++|.+.+ |. ...++ +..+.|+++|+ |.|- |+.++-.+. + ..+.+.++.+
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~ 266 (384)
T 2qby_B 190 PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKA 266 (384)
T ss_dssp CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHH
T ss_pred CeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 389999999999999999885 32 23333 35667777777 8876 555544443 2 1277888887
Q ss_pred HHHHhccccccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCCCCccChhHHHHHhhccCcccccccHHHHHHHHH
Q 048810 71 LRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSEGHAIPVPYLLRYGMGMGYFKEVYTVEEARSRVH 150 (582)
Q Consensus 71 l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~ 150 (582)
++... ...+.-++..|+.+ -|..+...+....+..+. +.....--..| ... .+ ...+.
T Consensus 267 ~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~-~~----~~~~~ 324 (384)
T 2qby_B 267 IVDYE--------------QERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP-LS----YRRFS 324 (384)
T ss_dssp HHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC-CC----HHHHH
T ss_pred HHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC-CC----HHHHH
Confidence 76532 13466678889876 454444455411100111 01111111122 111 11 23445
Q ss_pred HHHHHHHhcccccc
Q 048810 151 TLIGKLKSLCLLLD 164 (582)
Q Consensus 151 ~~~~~L~~~~l~~~ 164 (582)
++++.|...+++..
T Consensus 325 ~~l~~L~~~gli~~ 338 (384)
T 2qby_B 325 DIISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCEEE
Confidence 67888999999864
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.84 E-value=96 Score=29.65 Aligned_cols=136 Identities=14% Similarity=0.075 Sum_probs=74.5
Q ss_pred ceEEccCCCHHHHHHHHHHhhC---C-CCCCcchHHHHHHHHHHhC---Ccch-HHHHHHHHHc-----c--C-ChHHHH
Q 048810 5 KEIQIDVLSKEEALQLFKKIVG---D-SMKTSAFQSIAVEIVGRCG---GLPV-ALITLAKALK-----N--E-SLDTWK 68 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~l~~~~~~i~~~c~---GlPL-ai~~~g~~L~-----~--~-~~~~W~ 68 (582)
..+++++++.++.++++.+.+. . ...+ .++.+.+++.++ |.|. |+.++..+.. + . +.+.++
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~ 266 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVY 266 (386)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 4799999999999999998653 1 2222 345667777777 9997 4444433321 1 2 666666
Q ss_pred HHHHHHhccccccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCCC-C-CccChhHHHHHhh--c--cCcccccccH
Q 048810 69 DVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFSE-G-HAIPVPYLLRYGM--G--MGYFKEVYTV 142 (582)
Q Consensus 69 ~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp~-~-~~i~~~~li~~Wi--a--eg~~~~~~~~ 142 (582)
.+++... ...+.-++..+|.+ .+..+..++...+ + ..+...++.+... + .|. .. .+
T Consensus 267 ~a~~~~~--------------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~-~~-~~- 328 (386)
T 2qby_A 267 MAKEEIE--------------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV-EA-VT- 328 (386)
T ss_dssp HHHHHHH--------------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC-CC-CC-
T ss_pred HHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC-CC-CC-
Confidence 6655421 23456667788876 4555554553222 2 1233333322211 1 111 11 01
Q ss_pred HHHHHHHHHHHHHHHhcccccc
Q 048810 143 EEARSRVHTLIGKLKSLCLLLD 164 (582)
Q Consensus 143 ~~~~~~~~~~~~~L~~~~l~~~ 164 (582)
...+..+++.|...+++..
T Consensus 329 ---~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 329 ---QRRVSDIINELDMVGILTA 347 (386)
T ss_dssp ---HHHHHHHHHHHHHHTSEEE
T ss_pred ---HHHHHHHHHHHHhCCCEEE
Confidence 1234456778888888854
No 177
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=34.04 E-value=74 Score=24.29 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=43.3
Q ss_pred HHHHHHH--HhhC--CCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC--ChHHHHHHHHHHh
Q 048810 16 EALQLFK--KIVG--DSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE--SLDTWKDVLRQLR 75 (582)
Q Consensus 16 ~~~~Lf~--~~a~--~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~--~~~~W~~~l~~l~ 75 (582)
|.|++=+ ...| +-.+.|.+...|-+..++..-.|+|+.++-+.=.+. ..+.|.-+++.+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 90 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Confidence 5666532 2234 667889999999999999999999999998765432 3344777777643
No 178
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=33.81 E-value=52 Score=28.44 Aligned_cols=51 Identities=14% Similarity=0.049 Sum_probs=38.0
Q ss_pred eEEccCCCHHHHHHHHHHhhC--CCCCCcchHHHHHHHHHHhCCcchHHHHHHHHH
Q 048810 6 EIQIDVLSKEEALQLFKKIVG--DSMKTSAFQSIAVEIVGRCGGLPVALITLAKAL 59 (582)
Q Consensus 6 ~~~l~~L~~~~~~~Lf~~~a~--~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L 59 (582)
.+++.+++.++..+++.+.+. +...+ .+....+++.++|.|..+..+...+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 789999999999999998875 22222 3567789999999998655544433
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.41 E-value=65 Score=30.02 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=37.6
Q ss_pred ceEEccCCCHHHHHHHHHHhhC--CCCCCcchHHHHHHHHHHhCCcch-HHHHHHHH
Q 048810 5 KEIQIDVLSKEEALQLFKKIVG--DSMKTSAFQSIAVEIVGRCGGLPV-ALITLAKA 58 (582)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~--~~~~~~~l~~~~~~i~~~c~GlPL-ai~~~g~~ 58 (582)
..+++.+++.++..+++.+.+. +...+ .+....|++.|+|.|. |+..+...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3789999999999999998775 22222 3567889999999994 45555443
No 180
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=28.09 E-value=3.9e+02 Score=25.26 Aligned_cols=135 Identities=10% Similarity=-0.020 Sum_probs=76.1
Q ss_pred eEEccCCCHHHHHHHHHHhhC----CCCCCcchHHHHHHHHHHh---------CCcchHH-HHHHHHHc-----cC---C
Q 048810 6 EIQIDVLSKEEALQLFKKIVG----DSMKTSAFQSIAVEIVGRC---------GGLPVAL-ITLAKALK-----NE---S 63 (582)
Q Consensus 6 ~~~l~~L~~~~~~~Lf~~~a~----~~~~~~~l~~~~~~i~~~c---------~GlPLai-~~~g~~L~-----~~---~ 63 (582)
.+++++++.++..+++...+. +...+ .+....|++++ +|.|-.+ ..+-.+.. +. +
T Consensus 187 ~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~ 263 (389)
T 1fnn_A 187 VIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIA 263 (389)
T ss_dssp EEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred eEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 689999999999999988763 12122 45778899999 7877443 33333222 21 3
Q ss_pred hHHHHHHHHHHhccccccccchhhhHHHHHHHHHhhcCchhHHHHHHHhccCC---CCCccChhHHHHHhhc----cCcc
Q 048810 64 LDTWKDVLRQLRSSYAKEIDGMEKNVYLSIKLSYDFLRSEEAKSLFLLCGLFS---EGHAIPVPYLLRYGMG----MGYF 136 (582)
Q Consensus 64 ~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfly~~~fp---~~~~i~~~~li~~Wia----eg~~ 136 (582)
.+....+....... .+.-.+..||.+ .|..+..++.+. .+..+...++...+.. .|..
T Consensus 264 ~~~v~~~~~~~~~~--------------~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 328 (389)
T 1fnn_A 264 PEDVRKSSKEVLFG--------------ISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER 328 (389)
T ss_dssp HHHHHHHHHHHSCC--------------CCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhh--------------hHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC
Confidence 44444444332111 122345678876 566665566543 2224555666554422 1211
Q ss_pred cccccHHHHHHHHHHHHHHHHhcccccc
Q 048810 137 KEVYTVEEARSRVHTLIGKLKSLCLLLD 164 (582)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 164 (582)
+ . + ...+..++++|...+++..
T Consensus 329 ~-~-~----~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 329 P-R-V----HSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp C-C-C----HHHHHHHHHHHHHTTSSEE
T ss_pred C-C-C----HHHHHHHHHHHHhCCCeEE
Confidence 1 0 1 1345567888999999865
No 181
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.07 E-value=50 Score=24.98 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=23.3
Q ss_pred ccccChHHhcCCCCccEEEcCCCCCCCCC-hhhhcccCccEEEcCC
Q 048810 245 SIQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLDRLINLQTLCLDG 289 (582)
Q Consensus 245 ~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~L~~L~~L~L~~ 289 (582)
...+....|.++..|+.+.+..+ ++.+- ..+.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34455555666666666666543 22222 3455555665555544
No 182
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=23.98 E-value=36 Score=18.07 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=14.7
Q ss_pred HhCCcchHHHHHHHHHccC
Q 048810 44 RCGGLPVALITLAKALKNE 62 (582)
Q Consensus 44 ~c~GlPLai~~~g~~L~~~ 62 (582)
|-.-+|||+.+.++.++.+
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 3457999999999987643
No 183
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.70 E-value=1.3e+02 Score=24.36 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHHHHH--HhhC--CCCCCcchHHHHHHHHHHhCCcchHHHHHHHHHccC--ChHHHHHHHHHHh
Q 048810 16 EALQLFK--KIVG--DSMKTSAFQSIAVEIVGRCGGLPVALITLAKALKNE--SLDTWKDVLRQLR 75 (582)
Q Consensus 16 ~~~~Lf~--~~a~--~~~~~~~l~~~~~~i~~~c~GlPLai~~~g~~L~~~--~~~~W~~~l~~l~ 75 (582)
|.|++=+ ...| +-.+.|.+.+.+-+..++..-.|+|+.++=+.=.+. ..+.|.-+++.+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 133 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHh
Confidence 4555533 2234 567889999999999999999999999987754432 3444777777643
Done!