BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048811
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EBB|A Chain A, PlapP97 COMPLEX
 pdb|3EBB|B Chain B, PlapP97 COMPLEX
 pdb|3EBB|C Chain C, PlapP97 COMPLEX
 pdb|3EBB|D Chain D, PlapP97 COMPLEX
          Length = 304

 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 148 CVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207
           C  SS    V +L   ++  + P+ + FP L IL++ I HP   V E  FC+     + S
Sbjct: 93  CNSSSEKPTVQQLQILWKAINCPEDIVFPALDILRLSIKHPS--VNEN-FCNEKEGAQFS 149

Query: 208 --LTVLIQPDDPPAN 220
             L  L+ P   PAN
Sbjct: 150 SHLINLLNPKGKPAN 164


>pdb|4AKF|A Chain A, Crystal Structure Of Vipd From Legionella Pneumophila
          Length = 577

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 22  EDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVRN 64
           EDR++    S +  I  F    D++  +++  +W HA +SV N
Sbjct: 320 EDRVNKAKQSAMEAISWFKARMDSLVEATIGGKWLHATSSVLN 362


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,733,893
Number of Sequences: 62578
Number of extensions: 319817
Number of successful extensions: 616
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 3
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)