Query 048811
Match_columns 318
No_of_seqs 163 out of 1495
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 13:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 2.6E-19 5.6E-24 153.0 -1.4 170 25-214 98-273 (419)
2 KOG4341 F-box protein containi 99.2 6.4E-13 1.4E-17 118.7 -2.7 264 27-313 74-380 (483)
3 PF12937 F-box-like: F-box-lik 98.9 1.8E-09 3.9E-14 68.7 3.4 35 25-59 1-35 (47)
4 PF00646 F-box: F-box domain; 98.5 6.8E-08 1.5E-12 61.6 1.6 37 25-61 3-39 (48)
5 smart00256 FBOX A Receptor for 98.4 3.3E-07 7.2E-12 56.1 3.1 34 28-61 1-34 (41)
6 PLN00113 leucine-rich repeat r 98.3 1.1E-06 2.3E-11 91.4 5.8 83 128-213 93-176 (968)
7 KOG2120 SCF ubiquitin ligase, 98.1 1.1E-07 2.3E-12 82.4 -4.3 130 125-267 231-376 (419)
8 PLN00113 leucine-rich repeat r 98.0 5.7E-06 1.2E-10 86.0 5.4 179 128-315 164-366 (968)
9 KOG4194 Membrane glycoprotein 98.0 3.2E-07 7E-12 86.0 -4.1 148 149-317 265-428 (873)
10 cd00116 LRR_RI Leucine-rich re 97.8 1.5E-06 3.4E-11 78.2 -2.4 176 129-316 109-318 (319)
11 KOG1909 Ran GTPase-activating 97.8 5.8E-06 1.2E-10 73.2 1.1 49 238-286 241-309 (382)
12 KOG3207 Beta-tubulin folding c 97.7 4.8E-06 1E-10 75.7 -1.1 167 128-314 146-335 (505)
13 PLN03210 Resistant to P. syrin 97.7 3.9E-05 8.5E-10 81.0 5.2 56 129-186 658-714 (1153)
14 cd00116 LRR_RI Leucine-rich re 97.7 6.5E-06 1.4E-10 74.1 -1.0 174 128-317 81-290 (319)
15 PLN03210 Resistant to P. syrin 97.6 0.0001 2.2E-09 78.0 7.0 62 149-212 630-692 (1153)
16 KOG1909 Ran GTPase-activating 97.5 1.7E-05 3.7E-10 70.3 -1.3 139 173-315 89-251 (382)
17 KOG4341 F-box protein containi 97.4 3E-05 6.4E-10 70.4 -0.5 147 150-312 291-459 (483)
18 PF07723 LRR_2: Leucine Rich R 97.3 0.00023 5E-09 38.7 2.8 25 177-201 1-26 (26)
19 PF14580 LRR_9: Leucine-rich r 97.2 3.9E-05 8.4E-10 62.9 -2.0 121 129-282 20-147 (175)
20 KOG3665 ZYG-1-like serine/thre 97.2 7.7E-05 1.7E-09 74.0 -0.5 60 153-213 122-185 (699)
21 KOG3207 Beta-tubulin folding c 97.1 4E-05 8.7E-10 69.9 -2.9 62 256-317 248-313 (505)
22 KOG1947 Leucine rich repeat pr 97.0 9.5E-06 2.1E-10 77.2 -8.1 39 23-61 43-81 (482)
23 PF13855 LRR_8: Leucine rich r 97.0 0.00035 7.6E-09 46.6 1.8 58 153-212 1-60 (61)
24 KOG4194 Membrane glycoprotein 97.0 0.00026 5.6E-09 67.1 1.1 60 252-317 219-281 (873)
25 PF14580 LRR_9: Leucine-rich r 96.9 3.4E-05 7.3E-10 63.3 -4.8 125 152-312 18-147 (175)
26 KOG2739 Leucine-rich acidic nu 96.2 0.00058 1.3E-08 58.5 -2.2 123 129-266 19-155 (260)
27 PRK15387 E3 ubiquitin-protein 96.1 0.0097 2.1E-07 59.9 5.6 73 129-213 202-274 (788)
28 KOG2982 Uncharacterized conser 96.0 0.003 6.5E-08 55.4 1.3 173 128-316 71-260 (418)
29 PRK15370 E3 ubiquitin-protein 95.9 0.0044 9.5E-08 62.3 2.5 13 201-213 283-295 (754)
30 KOG1947 Leucine rich repeat pr 95.9 0.0014 2.9E-08 62.4 -1.2 141 148-307 238-389 (482)
31 KOG0617 Ras suppressor protein 95.9 0.0001 2.2E-09 59.4 -7.4 67 144-213 47-114 (264)
32 KOG3665 ZYG-1-like serine/thre 95.6 0.0014 3E-08 65.2 -2.5 126 126-267 120-263 (699)
33 KOG0618 Serine/threonine phosp 95.5 0.0016 3.5E-08 64.9 -2.4 32 236-267 450-489 (1081)
34 KOG0281 Beta-TrCP (transducin 95.5 0.007 1.5E-07 53.7 1.7 37 22-58 72-112 (499)
35 PRK15370 E3 ubiquitin-protein 95.5 0.0053 1.2E-07 61.7 1.0 55 129-189 242-296 (754)
36 PF12799 LRR_4: Leucine Rich r 95.1 0.015 3.2E-07 36.0 1.9 36 176-213 1-36 (44)
37 PRK15387 E3 ubiquitin-protein 95.1 0.038 8.2E-07 55.7 5.7 51 129-187 223-273 (788)
38 PF13855 LRR_8: Leucine rich r 95.0 0.011 2.3E-07 39.3 1.1 58 254-317 1-61 (61)
39 PF12799 LRR_4: Leucine Rich r 94.8 0.016 3.5E-07 35.8 1.3 37 153-190 1-38 (44)
40 KOG0618 Serine/threonine phosp 94.4 0.0028 6.1E-08 63.2 -4.1 121 175-316 358-487 (1081)
41 KOG0444 Cytoskeletal regulator 94.3 0.00063 1.4E-08 65.1 -8.4 81 130-213 199-280 (1255)
42 KOG0444 Cytoskeletal regulator 94.2 0.0022 4.8E-08 61.5 -5.1 71 141-213 91-162 (1255)
43 KOG0617 Ras suppressor protein 94.1 0.00085 1.8E-08 54.2 -6.9 82 129-213 57-139 (264)
44 KOG2982 Uncharacterized conser 94.1 0.0091 2E-07 52.5 -1.1 59 154-213 46-109 (418)
45 KOG4237 Extracellular matrix p 93.6 0.0038 8.3E-08 56.7 -4.4 58 129-189 68-129 (498)
46 KOG1859 Leucine-rich repeat pr 93.5 0.01 2.3E-07 58.0 -2.1 64 102-167 57-122 (1096)
47 PLN03215 ascorbic acid mannose 93.4 0.057 1.2E-06 49.5 2.6 37 25-61 4-41 (373)
48 KOG2997 F-box protein FBX9 [Ge 93.3 0.042 9.2E-07 48.5 1.5 37 21-57 103-144 (366)
49 KOG1644 U2-associated snRNP A' 93.2 0.14 3.1E-06 42.6 4.4 16 249-264 135-150 (233)
50 PRK15386 type III secretion pr 92.2 0.31 6.6E-06 45.5 5.7 69 128-210 52-121 (426)
51 KOG2123 Uncharacterized conser 92.1 0.0029 6.3E-08 54.9 -7.0 57 153-213 19-75 (388)
52 PLN03150 hypothetical protein; 91.8 0.13 2.9E-06 51.0 3.1 57 155-213 420-478 (623)
53 KOG3864 Uncharacterized conser 91.1 0.018 3.9E-07 47.8 -3.2 41 174-214 123-164 (221)
54 COG4886 Leucine-rich repeat (L 90.9 0.042 9.1E-07 51.2 -1.4 58 153-213 116-175 (394)
55 KOG2123 Uncharacterized conser 90.8 0.0026 5.7E-08 55.2 -8.6 79 129-212 20-99 (388)
56 KOG3864 Uncharacterized conser 90.6 0.019 4.2E-07 47.6 -3.4 63 178-252 103-165 (221)
57 COG4886 Leucine-rich repeat (L 90.4 0.078 1.7E-06 49.3 -0.1 80 129-213 117-198 (394)
58 COG5238 RNA1 Ran GTPase-activa 90.1 0.19 4.1E-06 43.9 2.0 43 171-213 87-132 (388)
59 KOG1259 Nischarin, modulator o 90.1 0.079 1.7E-06 46.8 -0.3 74 174-264 282-362 (490)
60 KOG2739 Leucine-rich acidic nu 89.4 0.074 1.6E-06 45.8 -1.0 35 174-211 41-75 (260)
61 smart00367 LRR_CC Leucine-rich 89.0 0.17 3.7E-06 27.2 0.6 17 200-216 1-17 (26)
62 KOG4658 Apoptotic ATPase [Sign 88.9 0.12 2.7E-06 53.0 0.0 82 128-212 571-653 (889)
63 PLN03150 hypothetical protein; 88.6 0.3 6.6E-06 48.5 2.5 68 144-213 433-502 (623)
64 KOG1644 U2-associated snRNP A' 88.3 0.88 1.9E-05 38.1 4.5 84 152-248 63-150 (233)
65 KOG1859 Leucine-rich repeat pr 88.1 0.019 4.1E-07 56.3 -5.9 37 153-190 84-123 (1096)
66 KOG0274 Cdc4 and related F-box 88.0 0.26 5.6E-06 47.8 1.6 39 20-58 103-141 (537)
67 PF13013 F-box-like_2: F-box-l 86.3 0.58 1.3E-05 35.0 2.3 30 24-53 21-50 (109)
68 KOG1259 Nischarin, modulator o 83.2 1.4 3.1E-05 39.1 3.6 139 143-285 172-339 (490)
69 PF13516 LRR_6: Leucine Rich r 79.9 0.46 1E-05 24.8 -0.3 17 176-192 2-18 (24)
70 KOG4658 Apoptotic ATPase [Sign 77.2 5.8 0.00013 41.1 6.3 59 154-213 524-583 (889)
71 COG5238 RNA1 Ran GTPase-activa 77.0 3.8 8.2E-05 36.1 4.1 40 174-213 212-254 (388)
72 PRK15386 type III secretion pr 76.5 4.6 0.0001 37.8 4.9 49 127-184 71-120 (426)
73 KOG0472 Leucine-rich repeat pr 73.6 0.2 4.4E-06 46.0 -4.5 121 128-267 183-310 (565)
74 PF13504 LRR_7: Leucine rich r 68.5 3.5 7.6E-05 19.6 1.2 11 154-165 2-12 (17)
75 PF00560 LRR_1: Leucine Rich R 66.2 4.1 8.9E-05 20.7 1.3 14 154-168 1-14 (22)
76 KOG0472 Leucine-rich repeat pr 62.3 1.3 2.8E-05 41.0 -1.9 39 173-213 502-540 (565)
77 KOG4579 Leucine-rich repeat (L 60.0 1 2.2E-05 35.4 -2.5 58 153-213 53-112 (177)
78 PF09372 PRANC: PRANC domain; 59.7 7.4 0.00016 28.3 2.1 25 23-47 70-94 (97)
79 KOG4408 Putative Mg2+ and Co2+ 59.2 2.7 5.9E-05 37.6 -0.3 39 25-63 8-46 (386)
80 KOG3926 F-box proteins [Amino 58.1 2.8 6.1E-05 36.4 -0.4 48 24-71 201-255 (332)
81 KOG0531 Protein phosphatase 1, 56.6 4.3 9.4E-05 38.1 0.5 58 152-213 94-152 (414)
82 PF13306 LRR_5: Leucine rich r 51.2 25 0.00054 26.3 4.0 59 150-210 9-67 (129)
83 smart00368 LRR_RI Leucine rich 47.9 8 0.00017 21.0 0.5 20 176-195 2-21 (28)
84 KOG0531 Protein phosphatase 1, 44.9 9.4 0.0002 35.8 0.8 83 126-213 116-198 (414)
85 COG4829 CatC1 Muconolactone de 30.3 16 0.00034 25.9 -0.2 37 27-63 10-48 (98)
86 KOG0532 Leucine-rich repeat (L 30.2 3.5 7.6E-05 39.9 -4.5 15 199-213 187-201 (722)
87 smart00369 LRR_TYP Leucine-ric 30.0 26 0.00056 18.2 0.7 12 176-187 2-13 (26)
88 smart00370 LRR Leucine-rich re 30.0 26 0.00056 18.2 0.7 12 176-187 2-13 (26)
89 PF08387 FBD: FBD; InterPro: 29.6 53 0.0011 20.6 2.2 34 176-209 14-50 (51)
90 KOG0532 Leucine-rich repeat (L 28.5 1.8 3.9E-05 41.8 -6.7 129 145-290 113-249 (722)
91 smart00579 FBD domain in FBox 27.5 1.1E+02 0.0023 20.5 3.7 34 254-287 5-45 (72)
92 PF05725 FNIP: FNIP Repeat; I 26.5 89 0.0019 18.8 2.8 29 254-282 12-41 (44)
93 KOG4237 Extracellular matrix p 24.5 28 0.0006 32.5 0.3 40 173-213 271-310 (498)
94 PF01827 FTH: FTH domain; Int 21.3 3.4E+02 0.0073 20.5 6.0 115 87-208 5-124 (142)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.6e-19 Score=152.99 Aligned_cols=170 Identities=17% Similarity=0.228 Sum_probs=118.2
Q ss_pred CCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCcCe---eeEEeeCCCCCCCCCCCCchhhHHHHHHHHhhCCCcce
Q 048811 25 ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVR---NLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTDPVS 101 (318)
Q Consensus 25 is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~~~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 101 (318)
+++||||++..|||.|+.||+.+.+.|||||.++-+.-. .+++.... . ......+.+.+ +
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~-i-----------~p~~l~~l~~r-----g 160 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRN-I-----------HPDVLGRLLSR-----G 160 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCc-c-----------ChhHHHHHHhC-----C
Confidence 689999999999999999999999999999997533221 24444443 3 12333344443 4
Q ss_pred EeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCCCCCCc
Q 048811 102 IHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLK 179 (318)
Q Consensus 102 l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~ 179 (318)
|..|++--.. .+..++.... ..+..+++++|++........+...+..|..|+.|+| .|....++ ..-..-.+|+
T Consensus 161 V~v~Rlar~~-~~~prlae~~-~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl-Eg~~LdD~I~~~iAkN~~L~ 237 (419)
T KOG2120|consen 161 VIVFRLARSF-MDQPRLAEHF-SPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL-EGLRLDDPIVNTIAKNSNLV 237 (419)
T ss_pred eEEEEcchhh-hcCchhhhhh-hhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc-cccccCcHHHHHHhccccce
Confidence 6666654211 1112111111 1123479999999886555556666778999999999 88877654 1233678999
Q ss_pred eeEeeEEE-eCcchhhhhhcCCcccceeeeeeecCC
Q 048811 180 ILQIYITH-PENRVTEKLFCSCPSLTELSLTVLIQP 214 (318)
Q Consensus 180 ~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~ 214 (318)
+|+|+.|. +++.++.-++++|..|.+|+|.+|...
T Consensus 238 ~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 238 RLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred eeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 99999987 444459999999999999999999874
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=6.4e-13 Score=118.74 Aligned_cols=264 Identities=14% Similarity=0.158 Sum_probs=152.2
Q ss_pred CCChHHHHHHhhcCChhhHhhhhhcchhhHhh------cCcCeeeEEeeCCCCCCCCCCCCchhhHHHHHHHH-hhCCCc
Q 048811 27 ALPDSVLSNILTFLPLEDAVATSSLSQRWRHA------WTSVRNLCFDDGGPMGAAADNPDLVDEFNNFIESV-MAGTDP 99 (318)
Q Consensus 27 ~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~l------w~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~ 99 (318)
.||.|++..|||+|+++.+.|++++|+-|..+ |.++.-.+|.... - ...++.+ .|.+|-
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv-~-------------g~VV~~~~~Rcgg~ 139 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV-D-------------GGVVENMISRCGGF 139 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC-C-------------CcceehHhhhhccc
Confidence 69999999999999999999999999999864 6666554554433 1 2223333 333444
Q ss_pred ceEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEcc-CccccCCCCCccCCcccEEEecccceecCC----CCcCC
Q 048811 100 VSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQ-YAPMQLPGCVYSSMTLEVLRLHTAFRFADP----PDGVC 174 (318)
Q Consensus 100 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~----~~~~~ 174 (318)
+++++++.........+.... ...+++++|.+..+. .+...+-.....|+.|++|.| ..|..... ..+.+
T Consensus 140 --lk~LSlrG~r~v~~sslrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L-~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 140 --LKELSLRGCRAVGDSSLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL-HSCSSITDVSLKYLAEG 214 (483)
T ss_pred --cccccccccccCCcchhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh-cccchhHHHHHHHHHHh
Confidence 888888765443322222211 123578888777662 122223333445888899988 77654432 13458
Q ss_pred CCCCceeEeeEEEeCcc-hhhhhhcCCcccceeeeeeecCCCCCC-----------Cceeeeccc-c---ceEEEEEEcC
Q 048811 175 FPQLKILQIYITHPENR-VTEKLFCSCPSLTELSLTVLIQPDDPP-----------ANFIIQSTT-L---NTLTFVVLFA 238 (318)
Q Consensus 175 ~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~c~~~~~~~-----------~~~~i~s~~-~---~~~~l~i~~~ 238 (318)
||+|+.|++++|.-..+ +++.+..+|..|+++.+.+|....+.. ..+++++.. + +...+.-.+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 99999999988874444 488888899999999888886632200 011111110 0 0000111234
Q ss_pred ccceEEEeee----------EEEeCCCeeEEEEEecccc-----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcC
Q 048811 239 SLRGMSYHHR----------AVIMAPNLQLIRIVDNMLM-----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEG 303 (318)
Q Consensus 239 ~L~~L~i~~~----------~~i~~P~L~~L~~~~~~~~-----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~ 303 (318)
.|+.|..++| +.-..++|+.+.+.++..- ...-.+.+.|+++.+.-+.--. ...+.++-.+
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~----d~tL~sls~~ 370 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT----DGTLASLSRN 370 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh----hhhHhhhccC
Confidence 5666666666 4455677777777666521 1122345556655554331111 1134455556
Q ss_pred CCceeEEEee
Q 048811 304 VATTACLILS 313 (318)
Q Consensus 304 l~~v~~L~l~ 313 (318)
++.++.|.|+
T Consensus 371 C~~lr~lsls 380 (483)
T KOG4341|consen 371 CPRLRVLSLS 380 (483)
T ss_pred CchhccCChh
Confidence 6666666554
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.87 E-value=1.8e-09 Score=68.65 Aligned_cols=35 Identities=37% Similarity=0.671 Sum_probs=31.0
Q ss_pred CCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhc
Q 048811 25 ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAW 59 (318)
Q Consensus 25 is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw 59 (318)
|+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999865
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.46 E-value=6.8e-08 Score=61.59 Aligned_cols=37 Identities=41% Similarity=0.694 Sum_probs=31.2
Q ss_pred CCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCc
Q 048811 25 ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS 61 (318)
Q Consensus 25 is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~ 61 (318)
+++||+|++.+||++|+.+|.++.+.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
No 5
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.37 E-value=3.3e-07 Score=56.10 Aligned_cols=34 Identities=41% Similarity=0.714 Sum_probs=31.6
Q ss_pred CChHHHHHHhhcCChhhHhhhhhcchhhHhhcCc
Q 048811 28 LPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS 61 (318)
Q Consensus 28 LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~ 61 (318)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987643
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.26 E-value=1.1e-06 Score=91.39 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=54.0
Q ss_pred CCceEEEEEEccCccccCCCCCc-cCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVY-SSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
..++.|+++.... ...+|..++ .+++|++|+| .++.+........+++|++|+|.++.+... +..-+..+++|+.|
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~L-s~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L 169 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNL-SNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEEC-cCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence 5788888766532 124666555 6788888888 666554332234677888888887776533 34445677788888
Q ss_pred eeeeecC
Q 048811 207 SLTVLIQ 213 (318)
Q Consensus 207 ~l~~c~~ 213 (318)
++.+|..
T Consensus 170 ~L~~n~l 176 (968)
T PLN00113 170 DLGGNVL 176 (968)
T ss_pred ECccCcc
Confidence 8877764
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.1e-07 Score=82.38 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=90.1
Q ss_pred HHHCCceEEEEEEccC-ccccCCCCCccCCcccEEEecccceecCCC----CcCCCCCCceeEeeEEEe--Ccchhhhhh
Q 048811 125 AIMRNVREMEIDIIQY-APMQLPGCVYSSMTLEVLRLHTAFRFADPP----DGVCFPQLKILQIYITHP--ENRVTEKLF 197 (318)
Q Consensus 125 a~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~L~~L~L~~~~~--~~~~l~~ll 197 (318)
|-..++++++++.+.. ....+...+.+|+.|..|+| .+|....+. ...--+.|+.|+|.+++- ...++..+.
T Consensus 231 AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl-sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 231 AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL-SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred hccccceeeccccccccchhHHHHHHHhhhhHhhcCc-hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 3346899999999832 23333344567899999999 888655432 122457899999998863 333488888
Q ss_pred cCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee---------EEEeCCCeeEEEEEecccc
Q 048811 198 CSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR---------AVIMAPNLQLIRIVDNMLM 267 (318)
Q Consensus 198 ~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~---------~~i~~P~L~~L~~~~~~~~ 267 (318)
..||.|.+|+|++|....+ ++...-...+.|++|+++.| ..-+.|.|.+|+..|+..+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~------------~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKN------------DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HhCCceeeeccccccccCc------------hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 9999999999999976433 11111125678888888888 3446788888888777654
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.03 E-value=5.7e-06 Score=85.98 Aligned_cols=179 Identities=14% Similarity=0.147 Sum_probs=85.1
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC-CC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD-PP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
.++++|+++.+.. ...+|..+..+++|++|+| .++.+.. .| ....+++|++|+|.++.+.+. +..-+..+++|++
T Consensus 164 ~~L~~L~L~~n~l-~~~~p~~~~~l~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~ 240 (968)
T PLN00113 164 SSLKVLDLGGNVL-VGKIPNSLTNLTSLEFLTL-ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLNH 240 (968)
T ss_pred CCCCEEECccCcc-cccCChhhhhCcCCCeeec-cCCCCcCcCChHHcCcCCccEEECcCCccCCc-CChhHhcCCCCCE
Confidence 4677777765521 1245555556667777777 5554432 12 223566666666666655432 2333455666666
Q ss_pred eeeeeecCCCCCC---------CceeeeccccceE-EEEE-EcCccceEEEeee--------EEEeCCCeeEEEEEeccc
Q 048811 206 LSLTVLIQPDDPP---------ANFIIQSTTLNTL-TFVV-LFASLRGMSYHHR--------AVIMAPNLQLIRIVDNML 266 (318)
Q Consensus 206 L~l~~c~~~~~~~---------~~~~i~s~~~~~~-~l~i-~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~ 266 (318)
|++.+|......+ ..+.++...+... .-.+ ..++|+.|++++| .....++|++|.+.++..
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 6666554311100 0011110000000 0001 2356677777666 112456677777766543
Q ss_pred c---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811 267 M---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG 315 (318)
Q Consensus 267 ~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~ 315 (318)
. ...+.++++|+.+.+..+.... .+...+..+++++.|+++.+
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~------~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSG------EIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcC------cCChHHhCCCCCcEEECCCC
Confidence 2 2235566777776665443211 11223444555555555544
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.98 E-value=3.2e-07 Score=86.02 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=80.5
Q ss_pred CccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeecc
Q 048811 149 VYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQST 226 (318)
Q Consensus 149 ~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~ 226 (318)
++.|.++++|+| .......+. ...++.+|+.|+|++..+..-.... =+.|+.|++|+|++.....-.++.
T Consensus 265 Fy~l~kme~l~L-~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~i~~l~~~s------ 336 (873)
T KOG4194|consen 265 FYGLEKMEHLNL-ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNRITRLDEGS------ 336 (873)
T ss_pred eeeecccceeec-ccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccccccCChhH------
Confidence 456788888888 655554442 2347888888888877655433222 246888999988888763211111
Q ss_pred ccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc------ceeecCCCCceEEEEEEEeccCCCC
Q 048811 227 TLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM------EYEVHEMQSIQQATLDLQHWESDTV 292 (318)
Q Consensus 227 ~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~------~~~~~~~~sL~~l~l~~~~~~~~~~ 292 (318)
+ ....+|++|.+++. ......+|+.|++..+... ...+..+|+|+++.+..+....
T Consensus 337 ------f-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~--- 406 (873)
T KOG4194|consen 337 ------F-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS--- 406 (873)
T ss_pred ------H-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee---
Confidence 1 12344555555544 2233444555554443321 1234446666666665443221
Q ss_pred ChhhHHHHhcCCCceeEEEeecCcC
Q 048811 293 DPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 293 ~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
.-.+.+.++.++++|.|+++.|
T Consensus 407 ---I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 407 ---IPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred ---cchhhhccCcccceecCCCCcc
Confidence 1245566666666666666543
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.84 E-value=1.5e-06 Score=78.21 Aligned_cols=176 Identities=14% Similarity=0.049 Sum_probs=94.1
Q ss_pred CceEEEEEEccCcccc---CCCCCccC-CcccEEEecccceecCC-----C-CcCCCCCCceeEeeEEEeCcchhhhh--
Q 048811 129 NVREMEIDIIQYAPMQ---LPGCVYSS-MTLEVLRLHTAFRFADP-----P-DGVCFPQLKILQIYITHPENRVTEKL-- 196 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~---lp~~~~~~-~~L~~L~L~~~~~~~~~-----~-~~~~~~~L~~L~L~~~~~~~~~l~~l-- 196 (318)
.+++|+++.+...... +...+..+ ++|+.|+| .+|.+... . ....+++|++|+|.++.+.+..+..+
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL-GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc-CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 4777777665322111 11122233 67777777 66655421 0 11245677777777777766543333
Q ss_pred -hcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEE-------------EeCCCeeEEEEE
Q 048811 197 -FCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAV-------------IMAPNLQLIRIV 262 (318)
Q Consensus 197 -l~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~-------------i~~P~L~~L~~~ 262 (318)
+..++.|++|++.+|...+.+.. .....--..++|+.|++++|-. ...+.|++|.+.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~---------~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGAS---------ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHH---------HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 33455777777777765211000 0000001346778888777610 013678888877
Q ss_pred ecccc-------ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCC-CceeEEEeecCc
Q 048811 263 DNMLM-------EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGV-ATTACLILSGGV 316 (318)
Q Consensus 263 ~~~~~-------~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~ 316 (318)
++... ...+..++.|+.+.+..+.. ...+...+.+.+... ++++.|.+..+.
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKF--GEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCC--cHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 76542 11233456677766655432 222245566667766 777777776653
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.83 E-value=5.8e-06 Score=73.20 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=26.9
Q ss_pred CccceEEEeee-------------EEEeCCCeeEEEEEecccc-------ceeecCCCCceEEEEEEEe
Q 048811 238 ASLRGMSYHHR-------------AVIMAPNLQLIRIVDNMLM-------EYEVHEMQSIQQATLDLQH 286 (318)
Q Consensus 238 ~~L~~L~i~~~-------------~~i~~P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l~~~~ 286 (318)
|.|+.|++.+| +.-.+|+|+.+.+.++... ...+...|.|+++.|+.+.
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 45666666666 3333666666666665442 1233446666666665553
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=4.8e-06 Score=75.74 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=104.2
Q ss_pred CCceEEEEEEccC-ccccCCCCCccCCcccEEEecccceecCCCC---cCCCCCCceeEeeEEEeCcchhhhhhcCCccc
Q 048811 128 RNVREMEIDIIQY-APMQLPGCVYSSMTLEVLRLHTAFRFADPPD---GVCFPQLKILQIYITHPENRVTEKLFCSCPSL 203 (318)
Q Consensus 128 ~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 203 (318)
.++++|+++..-. ...++-..+-..++|+.|+| ....+..+.. ...+++||+|+|..|.+...++..++.+||.|
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNl-s~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNL-SSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhccc-ccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 4677777765411 11122223334578888888 5544433322 23799999999999999987899999999999
Q ss_pred ceeeeeeecCCCCCCCceeeeccccceEEEE-EEcCccceEEEeee---------EEEeCCCeeEEEEEeccccc---e-
Q 048811 204 TELSLTVLIQPDDPPANFIIQSTTLNTLTFV-VLFASLRGMSYHHR---------AVIMAPNLQLIRIVDNMLME---Y- 269 (318)
Q Consensus 204 e~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~---------~~i~~P~L~~L~~~~~~~~~---~- 269 (318)
+.|.+.+.... . ..... -...+|+.|++++. ..-+.|+|..|++..+.... +
T Consensus 225 ~~L~L~~N~~~-~-------------~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d 290 (505)
T KOG3207|consen 225 EVLYLEANEII-L-------------IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPD 290 (505)
T ss_pred HHhhhhccccc-c-------------eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCC
Confidence 99999998541 0 11111 13467899998887 44567788888877765431 1
Q ss_pred -----eecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeec
Q 048811 270 -----EVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSG 314 (318)
Q Consensus 270 -----~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~ 314 (318)
....+|+|+.+.+.-+... .-...+=+..+.++++|.+..
T Consensus 291 ~~s~~kt~~f~kL~~L~i~~N~I~-----~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNISENNIR-----DWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccchhhhcccccceeeecccCccc-----cccccchhhccchhhhhhccc
Confidence 2346788998888655321 011123344555666655443
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.70 E-value=3.9e-05 Score=80.99 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=25.4
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccce-ecCCCCcCCCCCCceeEeeEE
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFR-FADPPDGVCFPQLKILQIYIT 186 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~ 186 (318)
+++.|++..+. ....+|..+..+++|+.|++ .+|. +...|....+++|++|+|.+|
T Consensus 658 ~Le~L~L~~c~-~L~~lp~si~~L~~L~~L~L-~~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 658 NLETLKLSDCS-SLVELPSSIQYLNKLEDLDM-SRCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred cccEEEecCCC-CccccchhhhccCCCCEEeC-CCCCCcCccCCcCCCCCCCEEeCCCC
Confidence 44444444331 12234444444555555555 4442 222233334555555555544
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.68 E-value=6.5e-06 Score=74.12 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=113.3
Q ss_pred CCceEEEEEEccCccccCCCCCccC---CcccEEEecccceecCCC------CcCCC-CCCceeEeeEEEeCcch---hh
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSS---MTLEVLRLHTAFRFADPP------DGVCF-PQLKILQIYITHPENRV---TE 194 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~---~~L~~L~L~~~~~~~~~~------~~~~~-~~L~~L~L~~~~~~~~~---l~ 194 (318)
.++++|+++.+.... ..+..+... ++|++|++ .++.+.... ....+ ++|++|+|.++.+.... +.
T Consensus 81 ~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~l-s~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 81 CGLQELDLSDNALGP-DGCGVLESLLRSSSLQELKL-NNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred CceeEEEccCCCCCh-hHHHHHHHHhccCcccEEEe-eCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 588899987663221 111111112 55999999 777654311 11245 89999999999988544 55
Q ss_pred hhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEE---EEcCccceEEEeee------------EEEeCCCeeEE
Q 048811 195 KLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV---VLFASLRGMSYHHR------------AVIMAPNLQLI 259 (318)
Q Consensus 195 ~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~---i~~~~L~~L~i~~~------------~~i~~P~L~~L 259 (318)
..+.+|+.|++|++.+|...+. ....+. ...++|+.|++++| ..-..|+|++|
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDA------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchH------------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence 5677889999999999876311 011110 12368999999987 23356889999
Q ss_pred EEEeccccc----eeec----CCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 260 RIVDNMLME----YEVH----EMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 260 ~~~~~~~~~----~~~~----~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
+++++.... .... ..+.|+++++..+..... ....+...+..+++++.|.++.+.+
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD--GAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH--HHHHHHHHHhcCCCccEEECCCCCC
Confidence 999976531 1111 247899999876642211 2456677788889999999988753
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.64 E-value=0.0001 Score=77.97 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=26.9
Q ss_pred CccCCcccEEEecccce-ecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811 149 VYSSMTLEVLRLHTAFR-FADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI 212 (318)
Q Consensus 149 ~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 212 (318)
+..+++|+.|+| .++. ....|....+++|++|+|.+|..... +..-+..+++|+.|++.+|.
T Consensus 630 ~~~l~~Lk~L~L-s~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 630 VHSLTGLRNIDL-RGSKNLKEIPDLSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred cccCCCCCEEEC-CCCCCcCcCCccccCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCC
Confidence 334445555555 3332 22223333455555555555432211 22233445555555555554
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.46 E-value=1.7e-05 Score=70.29 Aligned_cols=139 Identities=16% Similarity=0.126 Sum_probs=75.4
Q ss_pred CCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecCCCCCCCcee--eeccccceEEEEEEcCccceEEEee
Q 048811 173 VCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQPDDPPANFI--IQSTTLNTLTFVVLFASLRGMSYHH 247 (318)
Q Consensus 173 ~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~--i~s~~~~~~~l~i~~~~L~~L~i~~ 247 (318)
.++|+|++|+|++..+...+ +..++++|..|++|.|.+|.....+..++. +.. +......-..+.|+.+.+.+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~--l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFE--LAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHH--HHHHhccCCCcceEEEEeec
Confidence 36788888888888887776 888889999999999999975322111100 000 00001111345666666665
Q ss_pred e------------EEEeCCCeeEEEEEecccc-------ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCcee
Q 048811 248 R------------AVIMAPNLQLIRIVDNMLM-------EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTA 308 (318)
Q Consensus 248 ~------------~~i~~P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~ 308 (318)
. ..-..|.|+.+++.-+... ...+..+|+|+.++|.-+.+... ....+.+.+..+++++
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e--gs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE--GSVALAKALSSWPHLR 244 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH--HHHHHHHHhcccchhe
Confidence 4 1222356666665544322 12244566666655544432211 2445555555566666
Q ss_pred EEEeecC
Q 048811 309 CLILSGG 315 (318)
Q Consensus 309 ~L~l~~~ 315 (318)
.|.+++.
T Consensus 245 El~l~dc 251 (382)
T KOG1909|consen 245 ELNLGDC 251 (382)
T ss_pred eeccccc
Confidence 5555543
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.40 E-value=3e-05 Score=70.36 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=73.1
Q ss_pred ccCCcccEEEecccceecCC----CCcCCCCCCceeEeeEEE-eCcchhhhhhcCCcccceeeeeeecCCCCCCCceeee
Q 048811 150 YSSMTLEVLRLHTAFRFADP----PDGVCFPQLKILQIYITH-PENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQ 224 (318)
Q Consensus 150 ~~~~~L~~L~L~~~~~~~~~----~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~ 224 (318)
..|..|++|.. .+|..... .-..++++|+.|-|..|. |.+..+..+-.+||.||.|.+.+|....|.
T Consensus 291 ~~c~~lq~l~~-s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~------- 362 (483)
T KOG4341|consen 291 CGCHALQVLCY-SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG------- 362 (483)
T ss_pred hhhhHhhhhcc-cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-------
Confidence 34555666666 55544322 112255666666666665 333335555566666666666666542220
Q ss_pred ccccceEEEEEEcCccceEEEeee-------------EEEeCCCeeEEEEEeccccc----eeecCCCCceEEEEEEEec
Q 048811 225 STTLNTLTFVVLFASLRGMSYHHR-------------AVIMAPNLQLIRIVDNMLME----YEVHEMQSIQQATLDLQHW 287 (318)
Q Consensus 225 s~~~~~~~l~i~~~~L~~L~i~~~-------------~~i~~P~L~~L~~~~~~~~~----~~~~~~~sL~~l~l~~~~~ 287 (318)
....+...+|.|+.|+++.| ..-..-.|+.+.+..++... ..+..++.|+.+.+.-+..
T Consensus 363 ----tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 363 ----TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ----hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 12334455566666666655 11223335555555554431 1234566666643332211
Q ss_pred cCCCCChhhHHHHhcCCCceeEEEe
Q 048811 288 ESDTVDPQRARNLIEGVATTACLIL 312 (318)
Q Consensus 288 ~~~~~~~~~~~~~l~~l~~v~~L~l 312 (318)
. -......|-..+++++...+
T Consensus 439 --v--tk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 439 --V--TKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred --h--hhhhhHHHHhhCccceehhh
Confidence 0 13345666677777776654
No 18
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.35 E-value=0.00023 Score=38.67 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCceeEeeEEEeCcch-hhhhhcCCc
Q 048811 177 QLKILQIYITHPENRV-TEKLFCSCP 201 (318)
Q Consensus 177 ~L~~L~L~~~~~~~~~-l~~ll~~cp 201 (318)
+||+|+|.++.+.++. ++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 5899999999998886 999999998
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.20 E-value=3.9e-05 Score=62.91 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=43.5
Q ss_pred CceEEEEEEccCccccCCCCCc-cCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVY-SSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
+.++|+++.......+ .+. .+.+|+.|+| +++.+...++...++.|++|+|.+..+.+-. ..+...||+|++|.
T Consensus 20 ~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~L-s~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE---NLGATLDKLEVLDL-SNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE--TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE
T ss_pred cccccccccccccccc---chhhhhcCCCEEEC-CCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEE
Confidence 5677777776333221 222 3578999999 8888877777778999999999999887632 23345799999999
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecccc------ceeecCCCCceEEE
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM------EYEVHEMQSIQQAT 281 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~------~~~~~~~~sL~~l~ 281 (318)
+.+....+ ...+ ..| ...|+|+.|++.|++.. .+.+..+|+|+.++
T Consensus 95 L~~N~I~~--------------l~~l----~~L----------~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISD--------------LNEL----EPL----------SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---S--------------CCCC----GGG----------GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCC--------------hHHh----HHH----------HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 98887731 1111 111 13577777777776643 33556788888754
Q ss_pred E
Q 048811 282 L 282 (318)
Q Consensus 282 l 282 (318)
-
T Consensus 147 ~ 147 (175)
T PF14580_consen 147 G 147 (175)
T ss_dssp T
T ss_pred C
Confidence 3
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=7.7e-05 Score=73.96 Aligned_cols=60 Identities=23% Similarity=0.254 Sum_probs=47.4
Q ss_pred CcccEEEecccceec--CCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 153 MTLEVLRLHTAFRFA--DPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~--~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+|++|++ .|-... .++ .+.-||+|++|.+.+..+..+++..+..++|+|..|+++++..
T Consensus 122 ~nL~~LdI-~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 122 QNLQHLDI-SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred HhhhhcCc-cccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence 56788888 553221 112 2347999999999999999888999999999999999999987
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=4e-05 Score=69.86 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=31.2
Q ss_pred eeEEEEEecccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 256 LQLIRIVDNMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 256 L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
|+.|+++++... .+..+.+|.|+.+++..+....-..-......-...++.++.|.++.+.+
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 555555555432 23455666666666655432111000111123345677888888777654
No 22
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.05 E-value=9.5e-06 Score=77.23 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=29.2
Q ss_pred ccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCc
Q 048811 23 DRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS 61 (318)
Q Consensus 23 d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~ 61 (318)
+.....|+.....+....+..+...+..++++|......
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 455677888888888888888887788888888765443
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.03 E-value=0.00035 Score=46.63 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=42.3
Q ss_pred CcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811 153 MTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI 212 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 212 (318)
++|++|+| .++.+...+ ...++++|++|+|.++.+..- -...+.++|+|+.|.+.++.
T Consensus 1 p~L~~L~l-~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDL-SNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEE-TSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEEC-CCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 46788888 777655543 234788899999888887543 24567889999999988775
No 24
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.98 E-value=0.00026 Score=67.08 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=35.5
Q ss_pred eCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 252 MAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 252 ~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
..|+|+.|.+..+... ...|.+++||+.+.+.-+....-. -..+-++.++++|+|..+.+
T Consensus 219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~------DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD------DGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc------Ccceeeecccceeecccchh
Confidence 3677777777666544 235667777777777544211000 12356778888888876643
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.91 E-value=3.4e-05 Score=63.25 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=40.9
Q ss_pred CCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811 152 SMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT 230 (318)
Q Consensus 152 ~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~ 230 (318)
+..++.|+| .+..+....... .+.+|+.|+|+++.+..- .. +.+++.|+.|.+.+....+ .
T Consensus 18 ~~~~~~L~L-~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~-l~~L~~L~~L~L~~N~I~~--------------i 79 (175)
T PF14580_consen 18 PVKLRELNL-RGNQISTIENLGATLDKLEVLDLSNNQITKL--EG-LPGLPRLKTLDLSNNRISS--------------I 79 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S---------------
T ss_pred ccccccccc-cccccccccchhhhhcCCCEEECCCCCCccc--cC-ccChhhhhhcccCCCCCCc--------------c
Confidence 445677777 666555443222 466777777777766542 22 4456777777776666521 0
Q ss_pred EEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCc
Q 048811 231 LTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVAT 306 (318)
Q Consensus 231 ~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~ 306 (318)
.. . +.-..|+|+.|.+.++... ...+..+|+|+.+++..++..... ++. ...+..+|+
T Consensus 80 ~~------~---------l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~-~YR--~~vi~~lP~ 141 (175)
T PF14580_consen 80 SE------G---------LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK-NYR--LFVIYKLPS 141 (175)
T ss_dssp CH------H---------HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST-THH--HHHHHH-TT
T ss_pred cc------c---------hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh-hHH--HHHHHHcCh
Confidence 00 0 0012577777777766543 234668999999999877644332 122 455678888
Q ss_pred eeEEEe
Q 048811 307 TACLIL 312 (318)
Q Consensus 307 v~~L~l 312 (318)
++.|+-
T Consensus 142 Lk~LD~ 147 (175)
T PF14580_consen 142 LKVLDG 147 (175)
T ss_dssp -SEETT
T ss_pred hheeCC
Confidence 888854
No 26
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.00058 Score=58.48 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=78.5
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELS 207 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~ 207 (318)
.+.++.++.+....-.+....-....|+.|++ .++........-.+|+||+|.++...+.... +..++..||+|++|+
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~-~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSV-INVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhh-hccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 34555555543222223333333456677777 6666655555557889999999988444433 777888899999999
Q ss_pred eeeecCCCCCCCceeeeccccceEEEE--EEcCccceEEEeee-----------EEEeCCCeeEEEEEeccc
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFV--VLFASLRGMSYHHR-----------AVIMAPNLQLIRIVDNML 266 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~--i~~~~L~~L~i~~~-----------~~i~~P~L~~L~~~~~~~ 266 (318)
+++....+ +..+. -..++|+.|...+| +..-+|+|++|+..+...
T Consensus 98 ls~Nki~~--------------lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 98 LSGNKIKD--------------LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred ecCCcccc--------------ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 99988721 11111 13467888888888 455678888888766544
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.08 E-value=0.0097 Score=59.85 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=40.5
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL 208 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 208 (318)
+-..|+++.. .-..+|..+. ++|+.|.+ ....+...|. ..++|++|+|.++.+.. +.. ..+.|++|++
T Consensus 202 ~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L-~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGES--GLTTLPDCLP--AHITTLVI-PDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCC--CCCcCCcchh--cCCCEEEc-cCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeec
Confidence 4445555544 2234565443 36777777 6665555443 35777777777766543 111 2356666666
Q ss_pred eeecC
Q 048811 209 TVLIQ 213 (318)
Q Consensus 209 ~~c~~ 213 (318)
.++..
T Consensus 270 s~N~L 274 (788)
T PRK15387 270 FSNPL 274 (788)
T ss_pred cCCch
Confidence 66543
No 28
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.003 Score=55.39 Aligned_cols=173 Identities=13% Similarity=0.094 Sum_probs=110.3
Q ss_pred CCceEEEEEEccCc-cccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYA-PMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~-~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
..|+++++...... ..++.+.+-..+.|+.|+| +......+.. +....+|++|.|.+....-......++.-|.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNl-s~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNL-SCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeec-cCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 37999999876332 3345555556788999999 5444433322 235668999999988877666888889999999
Q ss_pred eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----------EEEeCCCeeEEEEEecccc----cee
Q 048811 205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----------AVIMAPNLQLIRIVDNMLM----EYE 270 (318)
Q Consensus 205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----------~~i~~P~L~~L~~~~~~~~----~~~ 270 (318)
+|+++....- .+++ +...++-.++.++.|+...| +.---||+..+.+..++.. ...
T Consensus 150 elHmS~N~~r-----q~n~-----Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~ 219 (418)
T KOG2982|consen 150 ELHMSDNSLR-----QLNL-----DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG 219 (418)
T ss_pred hhhhccchhh-----hhcc-----ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc
Confidence 9998877320 0111 11222335678888888888 5666788888877666543 123
Q ss_pred ecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 271 VHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 271 ~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
...+|++.-+++..... +.-+...-|.+++.+..|.++.+-
T Consensus 220 se~~p~~~~LnL~~~~i-----dswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNI-----DSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCCCCcchhhhhccccc-----ccHHHHHHHcCCchhheeeccCCc
Confidence 44567766655544321 122334556777777777766553
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.94 E-value=0.0044 Score=62.29 Aligned_cols=13 Identities=23% Similarity=-0.066 Sum_probs=7.4
Q ss_pred cccceeeeeeecC
Q 048811 201 PSLTELSLTVLIQ 213 (318)
Q Consensus 201 p~Le~L~l~~c~~ 213 (318)
+.|+.|++.+|..
T Consensus 283 ~sL~~L~Ls~N~L 295 (754)
T PRK15370 283 EELRYLSVYDNSI 295 (754)
T ss_pred CCCcEEECCCCcc
Confidence 4566666665544
No 30
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.92 E-value=0.0014 Score=62.42 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=67.7
Q ss_pred CCccCCcccEEEecccceecCCC----CcCCCCCCceeEeeEEE-eCcchhhhhhcCCcccceeeeeeecCCCCCCCcee
Q 048811 148 CVYSSMTLEVLRLHTAFRFADPP----DGVCFPQLKILQIYITH-PENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFI 222 (318)
Q Consensus 148 ~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~ 222 (318)
....|++|++|+| .++...... ....|++|++|.+.+|. +++.++..+..+||.|++|+|.+|....+.
T Consensus 238 ~~~~~~~L~~l~l-~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~----- 311 (482)
T KOG1947|consen 238 LLSICRKLKSLDL-SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS----- 311 (482)
T ss_pred hhhhcCCcCccch-hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH-----
Confidence 3344566666666 554422211 11136666666666565 455556666666666666666666553220
Q ss_pred eeccccceEEEEEEcCccceEEEeeeEEEeCCCeeEEEEEeccc------cceeecCCCCceEEEEEEEeccCCCCChhh
Q 048811 223 IQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNML------MEYEVHEMQSIQQATLDLQHWESDTVDPQR 296 (318)
Q Consensus 223 i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~------~~~~~~~~~sL~~l~l~~~~~~~~~~~~~~ 296 (318)
....+...+++|+.|.+..+.. ++.++.+.+.+... .......++.++++.|..+. ..+. .
T Consensus 312 ------~l~~~~~~c~~l~~l~~~~~~~--c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~----~ 378 (482)
T KOG1947|consen 312 ------GLEALLKNCPNLRELKLLSLNG--CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL----G 378 (482)
T ss_pred ------HHHHHHHhCcchhhhhhhhcCC--CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc----c
Confidence 1111122344444444333211 33344444333222 13345567778877776653 2211 1
Q ss_pred HHHHhcCCCce
Q 048811 297 ARNLIEGVATT 307 (318)
Q Consensus 297 ~~~~l~~l~~v 307 (318)
....+.+++++
T Consensus 379 ~~~~l~gc~~l 389 (482)
T KOG1947|consen 379 LELSLRGCPNL 389 (482)
T ss_pred hHHHhcCCccc
Confidence 24555566655
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.91 E-value=0.0001 Score=59.41 Aligned_cols=67 Identities=27% Similarity=0.375 Sum_probs=40.4
Q ss_pred cCCCCCccCCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 144 QLPGCVYSSMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 144 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
..|+-+-...+|++|++ ...++...|... .+|.|+.|++.-.++.. +..=+.++|.||.|++.+...
T Consensus 47 ~vppnia~l~nlevln~-~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNL-SNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred ecCCcHHHhhhhhhhhc-ccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhcccccc
Confidence 34555555667777777 666666655433 67777777665333211 233345677888888777665
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.61 E-value=0.0014 Score=65.16 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=82.3
Q ss_pred HHCCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCC---CCcCCCCCCceeEeeEEEeCcchhhhhhcCCc
Q 048811 126 IMRNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADP---PDGVCFPQLKILQIYITHPENRVTEKLFCSCP 201 (318)
Q Consensus 126 ~~~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp 201 (318)
...++++|++.....-....|..+ ..+|+|++|.+ .+-.+... ....+||+|..|+++++.+.+- .-++.-+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i-~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk 195 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI-SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK 195 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEe-cCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence 346899999877532222222222 24589999999 77665443 1234899999999999988764 3467788
Q ss_pred ccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------------EEEeCCCeeEEEEEecccc
Q 048811 202 SLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------------AVIMAPNLQLIRIVDNMLM 267 (318)
Q Consensus 202 ~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------------~~i~~P~L~~L~~~~~~~~ 267 (318)
+||.|.+.+-...... +...+ ....+|+.|+|+.. .....|+|+.|+.+|....
T Consensus 196 nLq~L~mrnLe~e~~~-----------~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQ-----------DLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccCCCCCchh-----------hHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999998887763210 01111 14578888888875 2334788888888887654
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.51 E-value=0.0016 Score=64.88 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=23.6
Q ss_pred EcCccceEEEeee--------EEEeCCCeeEEEEEecccc
Q 048811 236 LFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM 267 (318)
Q Consensus 236 ~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~ 267 (318)
..|.|+.++++.. .....|+|++|+++|+...
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 4678888888876 2223389999999998754
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.49 E-value=0.007 Score=53.72 Aligned_cols=37 Identities=32% Similarity=0.599 Sum_probs=34.8
Q ss_pred CccCCCCC----hHHHHHHhhcCChhhHhhhhhcchhhHhh
Q 048811 22 EDRISALP----DSVLSNILTFLPLEDAVATSSLSQRWRHA 58 (318)
Q Consensus 22 ~d~is~LP----d~vL~~Ils~L~~~d~~~ts~vskrWr~l 58 (318)
.|.|+.|| |++-..|||+|+..++..+-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 58899999 99999999999999999999999999963
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.47 E-value=0.0053 Score=61.70 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=27.8
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeC
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPE 189 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 189 (318)
.++.|+++.+... .+|..+. .+|+.|+| .++.+...|... +++|+.|+|+++.+.
T Consensus 242 ~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~L-s~N~L~~LP~~l-~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 242 TIQEMELSINRIT--ELPERLP--SALQSLDL-FHNKISCLPENL-PEELRYLSVYDNSIR 296 (754)
T ss_pred cccEEECcCCccC--cCChhHh--CCCCEEEC-cCCccCcccccc-CCCCcEEECCCCccc
Confidence 5666666654322 3443322 35666666 554444333322 246666666665543
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.11 E-value=0.015 Score=35.96 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=20.9
Q ss_pred CCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 176 PQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 176 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
++|++|+|.++.+.+ +...+..||.|+.|++.++..
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence 356666666666553 444456677777777776655
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.11 E-value=0.038 Score=55.73 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=26.7
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEE
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITH 187 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~ 187 (318)
+++.|.+...... .+|.. .++|++|+| .++.+...|. ..++|++|+|.++.
T Consensus 223 ~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdL-s~N~LtsLP~--lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 223 HITTLVIPDNNLT--SLPAL---PPELRTLEV-SGNQLTSLPV--LPPGLLELSIFSNP 273 (788)
T ss_pred CCCEEEccCCcCC--CCCCC---CCCCcEEEe-cCCccCcccC--cccccceeeccCCc
Confidence 5666666554222 34432 356777777 6555544432 23456666555543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.01 E-value=0.011 Score=39.34 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=39.9
Q ss_pred CCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 254 PNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 254 P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
|+|++|.+.++... ...+.++++|+.+.|.-+....- -...+.++++++.|+++++-|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i------~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI------PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE------ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc------CHHHHcCCCCCCEEeCcCCcC
Confidence 67888888777543 34567889999988874432111 124588999999999988754
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.75 E-value=0.016 Score=35.82 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=28.0
Q ss_pred CcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCc
Q 048811 153 MTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPEN 190 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~ 190 (318)
++|++|+| .+..+...|. ...+++|++|++.++.+.+
T Consensus 1 ~~L~~L~l-~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDL-SNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEE-TSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEc-cCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 46888999 8877777666 6689999999998888764
No 40
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.38 E-value=0.0028 Score=63.22 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=61.3
Q ss_pred CCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEE-EEcCccceEEEeee-----
Q 048811 175 FPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV-VLFASLRGMSYHHR----- 248 (318)
Q Consensus 175 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~----- 248 (318)
++.|+.|.|.+..+++.-+. ++.+.+.|+.|+|.+.+.-.. .+.. -..+.|+.|.+++.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~f--------------pas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSF--------------PASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred hHHHHHHHHhcCcccccchh-hhccccceeeeeecccccccC--------------CHHHHhchHHhHHHhcccchhhhh
Confidence 45566666666666555333 355667777777777654100 0000 12345555555554
Q ss_pred --EEEeCCCeeEEEEEecccc-ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 249 --AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 249 --~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
.....+.|++|...++... +..+.++|+|+.+.+.-+.... ..+...+.. +++|.|+|++++
T Consensus 423 p~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~-----~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSE-----VTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhh-----hhhhhhCCC-cccceeeccCCc
Confidence 2334455555555554432 3355566677766665443211 111111212 577777777765
No 41
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.32 E-value=0.00063 Score=65.13 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=40.6
Q ss_pred ceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811 130 VREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL 208 (318)
Q Consensus 130 l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 208 (318)
++.|.++..+....++|.++-..++|..++| +...+..+| +...+++|++|+|++..+++-. .-..--.+||.|++
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDl-S~N~Lp~vPecly~l~~LrrLNLS~N~iteL~--~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL-SENNLPIVPECLYKLRNLRRLNLSGNKITELN--MTEGEWENLETLNL 275 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccc-cccCCCcchHHHhhhhhhheeccCcCceeeee--ccHHHHhhhhhhcc
Confidence 3334444444445556666666666666666 333333333 3335666666666666655432 11111234566666
Q ss_pred eeecC
Q 048811 209 TVLIQ 213 (318)
Q Consensus 209 ~~c~~ 213 (318)
+....
T Consensus 276 SrNQL 280 (1255)
T KOG0444|consen 276 SRNQL 280 (1255)
T ss_pred ccchh
Confidence 55544
No 42
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.17 E-value=0.0022 Score=61.54 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=36.7
Q ss_pred ccccCCCCCccCCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 141 APMQLPGCVYSSMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 141 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
....+|..+|..+.|+.|+| +...+...|... .-.++-.|+|++..+.+-- ..++.+...|-.|+|++...
T Consensus 91 KnsGiP~diF~l~dLt~lDL-ShNqL~EvP~~LE~AKn~iVLNLS~N~IetIP-n~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDL-SHNQLREVPTNLEYAKNSIVLNLSYNNIETIP-NSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred ccCCCCchhcccccceeeec-chhhhhhcchhhhhhcCcEEEEcccCccccCC-chHHHhhHhHhhhccccchh
Confidence 34456666777777777777 555555544322 4455666666666554321 22233333344455554443
No 43
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.12 E-value=0.00085 Score=54.17 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=52.0
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
+++.|.+... ...++|..+.+.+.|+.|++ +-......| +...||.|+.|+|.+..+.+..+..=+-....|.-|.
T Consensus 57 nlevln~~nn--qie~lp~~issl~klr~lnv-gmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 57 NLEVLNLSNN--QIEELPTSISSLPKLRILNV-GMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhcccc--hhhhcChhhhhchhhhheec-chhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 5555555543 45578888888889999988 544443334 5568999999999888877654332222334455555
Q ss_pred eeeecC
Q 048811 208 LTVLIQ 213 (318)
Q Consensus 208 l~~c~~ 213 (318)
+.....
T Consensus 134 l~dndf 139 (264)
T KOG0617|consen 134 LGDNDF 139 (264)
T ss_pred hcCCCc
Confidence 555443
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.0091 Score=52.46 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=43.1
Q ss_pred cccEEEecccceecCCC----CcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecC
Q 048811 154 TLEVLRLHTAFRFADPP----DGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 154 ~L~~L~L~~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.++.|.| .+|.+...- ....+..+++|+|.+..+.+-. +..++...|+|+.|+|+....
T Consensus 46 a~ellvl-n~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 46 ALELLVL-NGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred chhhhee-cCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence 4445566 666543221 1125788999999999988876 889999999999999987766
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=93.64 E-value=0.0038 Score=56.67 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=37.1
Q ss_pred CceEEEEEEccCccccCCCCCcc-CCcccEEEecccce--ecCCCCcCCCCCCceeEeeE-EEeC
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYS-SMTLEVLRLHTAFR--FADPPDGVCFPQLKILQIYI-THPE 189 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~-~~~L~~L~L~~~~~--~~~~~~~~~~~~L~~L~L~~-~~~~ 189 (318)
...+|+++-. ....+|...|. .++|++|+| +... ++.+....++++|.+|.+.+ .++.
T Consensus 68 ~tveirLdqN--~I~~iP~~aF~~l~~LRrLdL-S~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 68 ETVEIRLDQN--QISSIPPGAFKTLHRLRRLDL-SKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cceEEEeccC--CcccCChhhccchhhhceecc-cccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 5556666553 44567776664 488999999 4433 33334455888888888877 5544
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.48 E-value=0.01 Score=58.01 Aligned_cols=64 Identities=9% Similarity=0.144 Sum_probs=35.0
Q ss_pred EeEEEEEeeCCCCCCChhHHHHHHH--HCCceEEEEEEccCccccCCCCCccCCcccEEEecccceec
Q 048811 102 IHTFSLRSVNAIRRDRFPLWVSQAI--MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA 167 (318)
Q Consensus 102 l~~l~l~~~~~~~~~~~~~wl~~a~--~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~ 167 (318)
++.|+.-.....+...+... .... -...+.+.+......++.-|-.++...+|++|.| .+|.+.
T Consensus 57 ~~~f~a~~s~~ads~vl~qL-q~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LEl-rg~~L~ 122 (1096)
T KOG1859|consen 57 VDYFRAYVSDNADSRVLEQL-QRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLEL-RGCDLS 122 (1096)
T ss_pred CceeEEecCCcccchHHHHH-HHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEe-cCcchh
Confidence 67776654433333333332 2111 1245555554443333333778888899999999 887543
No 47
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.39 E-value=0.057 Score=49.49 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCCCChHHHHHHhhcCC-hhhHhhhhhcchhhHhhcCc
Q 048811 25 ISALPDSVLSNILTFLP-LEDAVATSSLSQRWRHAWTS 61 (318)
Q Consensus 25 is~LPd~vL~~Ils~L~-~~d~~~ts~vskrWr~lw~~ 61 (318)
.++||+|+|..|..+|+ .-|++|...||+.||..-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 67899999999999998 77999999999999986554
No 48
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.30 E-value=0.042 Score=48.47 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=31.4
Q ss_pred CCccCCCCChHHHHHHhhc-----CChhhHhhhhhcchhhHh
Q 048811 21 PEDRISALPDSVLSNILTF-----LPLEDAVATSSLSQRWRH 57 (318)
Q Consensus 21 ~~d~is~LPd~vL~~Ils~-----L~~~d~~~ts~vskrWr~ 57 (318)
.-+.|+.||||||..||.. |+.+++.++|+|||.|+.
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 3456789999999999965 457999999999999985
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.22 E-value=0.14 Score=42.60 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=10.5
Q ss_pred EEEeCCCeeEEEEEec
Q 048811 249 AVIMAPNLQLIRIVDN 264 (318)
Q Consensus 249 ~~i~~P~L~~L~~~~~ 264 (318)
+....|+|+.|++.+.
T Consensus 135 vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQKV 150 (233)
T ss_pred EEEecCcceEeehhhh
Confidence 4456677777777664
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.23 E-value=0.31 Score=45.47 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=40.8
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
++.+.|+++.+. -..+|. -..+|++|.+ .+|... ..|... .++|++|.+.+|... ..+. +.|+.|
T Consensus 52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~L-snc~nLtsLP~~L-P~nLe~L~Ls~Cs~L----~sLP---~sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCD--IESLPV---LPNELTEITI-ENCNNLTTLPGSI-PEGLEKLTVCHCPEI----SGLP---ESVRSL 117 (426)
T ss_pred cCCCEEEeCCCC--CcccCC---CCCCCcEEEc-cCCCCcccCCchh-hhhhhheEccCcccc----cccc---cccceE
Confidence 578888888762 233442 1246999999 776432 223322 358999999887421 1221 357777
Q ss_pred eeee
Q 048811 207 SLTV 210 (318)
Q Consensus 207 ~l~~ 210 (318)
.+..
T Consensus 118 ~L~~ 121 (426)
T PRK15386 118 EIKG 121 (426)
T ss_pred EeCC
Confidence 7653
No 51
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.13 E-value=0.0029 Score=54.94 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=38.7
Q ss_pred CcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 153 MTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+.+.|+. +||.+.+...-..+|.|+.|.|+-.++..- .-+..|.+|++|.|....+
T Consensus 19 ~~vkKLNc-wg~~L~DIsic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 19 ENVKKLNC-WGCGLDDISICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHhhhhcc-cCCCccHHHHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhccc
Confidence 35567777 777766655555777888888777766553 2355688888887776655
No 52
>PLN03150 hypothetical protein; Provisional
Probab=91.80 E-value=0.13 Score=50.96 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=35.8
Q ss_pred ccEEEecccceecCC-C-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 155 LEVLRLHTAFRFADP-P-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 155 L~~L~L~~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
++.|+| .++.+... | ....+++|+.|+|.++.+... +...+..++.|+.|+|.++..
T Consensus 420 v~~L~L-~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 420 IDGLGL-DNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEEC-CCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCC
Confidence 566777 55544321 2 233677788888877766533 444566777888888877765
No 53
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=0.018 Score=47.76 Aligned_cols=41 Identities=22% Similarity=0.123 Sum_probs=31.8
Q ss_pred CCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecCC
Q 048811 174 CFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQP 214 (318)
Q Consensus 174 ~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~ 214 (318)
+++.++.|.|.+|...+++ +..+-.-.|+|+.|.|++|...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence 6777888888888877776 7777677888888888888764
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.90 E-value=0.042 Score=51.15 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=34.1
Q ss_pred CcccEEEecccceecCCCCcCCCC--CCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 153 MTLEVLRLHTAFRFADPPDGVCFP--QLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
+.++.|.+ ....+...+....+. +|+.|++.+..+... ..-+..+|.|+.|.+.++..
T Consensus 116 ~~l~~L~l-~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 116 TNLTSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred cceeEEec-CCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchh
Confidence 45666666 555554444434433 677777776665432 12355677777777777766
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.80 E-value=0.0026 Score=55.22 Aligned_cols=79 Identities=22% Similarity=0.097 Sum_probs=52.1
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELS 207 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~ 207 (318)
+++.|....|...+..+ ...-+.|++|.| +-..+........|.+|++|.|....+.+-+ +.. +.+.|+|+.|=
T Consensus 20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsL-SvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSL-SVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHHHH---HHhcccceeEEe-eccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHh
Confidence 56666666654333222 112367888888 5555555555568899999999888887765 443 56888888888
Q ss_pred eeeec
Q 048811 208 LTVLI 212 (318)
Q Consensus 208 l~~c~ 212 (318)
|....
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 76643
No 56
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.63 E-value=0.019 Score=47.59 Aligned_cols=63 Identities=17% Similarity=0.014 Sum_probs=43.7
Q ss_pred CceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEEEe
Q 048811 178 LKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIM 252 (318)
Q Consensus 178 L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~ 252 (318)
++.++-+++.+..+++.+ +.+++.|+.|.+.+|...+|+ ....+.-.+|+|+.|++++|..|+
T Consensus 103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~-----------~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDW-----------CLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhH-----------HHHHhcccccchheeeccCCCeec
Confidence 455555666666666777 578999999999999887652 233343356788888888774444
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.43 E-value=0.078 Score=49.34 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=53.5
Q ss_pred CceEEEEEEccCccccCCCCCccCC-cccEEEecccceecCCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSM-TLEVLRLHTAFRFADPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
.+..+.+... ....+|......+ +|+.|++ .+..+...+ ....+++|+.|.+.++.+.+- .......+.|+.|
T Consensus 117 ~l~~L~l~~n--~i~~i~~~~~~~~~nL~~L~l-~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNN--NITDIPPLIGLLKSNLKELDL-SDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCc--ccccCccccccchhhcccccc-cccchhhhhhhhhccccccccccCCchhhhh--hhhhhhhhhhhhe
Confidence 4555555443 3445666555553 8888888 666665553 345788999999888887653 3333367888888
Q ss_pred eeeeecC
Q 048811 207 SLTVLIQ 213 (318)
Q Consensus 207 ~l~~c~~ 213 (318)
.+.+...
T Consensus 192 ~ls~N~i 198 (394)
T COG4886 192 DLSGNKI 198 (394)
T ss_pred eccCCcc
Confidence 8888876
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.07 E-value=0.19 Score=43.88 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=36.6
Q ss_pred CcCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecC
Q 048811 171 DGVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 171 ~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~ 213 (318)
....||+|++.+|++..|.... +..++++...|++|.+.+|..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3457899999999998887765 888999999999999999975
No 59
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.07 E-value=0.079 Score=46.79 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=43.9
Q ss_pred CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee-----
Q 048811 174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----- 248 (318)
Q Consensus 174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----- 248 (318)
.+..|++|+|++..+..- ..-+.-.|.++.|+++..... .+..+ -..++|..|++++.
T Consensus 282 TWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~--------------~v~nL-a~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIR--------------TVQNL-AELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred hHhhhhhccccccchhhh--hhhhhhccceeEEecccccee--------------eehhh-hhcccceEeecccchhHhh
Confidence 467788888887776543 333445688888888877652 11221 14567777777765
Q ss_pred --EEEeCCCeeEEEEEec
Q 048811 249 --AVIMAPNLQLIRIVDN 264 (318)
Q Consensus 249 --~~i~~P~L~~L~~~~~ 264 (318)
+....-|+++|.+.++
T Consensus 345 ~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhHhhhcCEeeeehhhh
Confidence 3333445555555444
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.39 E-value=0.074 Score=45.82 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=19.4
Q ss_pred CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeee
Q 048811 174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVL 211 (318)
Q Consensus 174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 211 (318)
.|..|+.|++.++..++-. . +-..|+|++|.++..
T Consensus 41 ~~~~le~ls~~n~gltt~~--~-~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT--N-FPKLPKLKKLELSDN 75 (260)
T ss_pred cccchhhhhhhccceeecc--c-CCCcchhhhhcccCC
Confidence 5566666666666554421 1 223466677777665
No 61
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.03 E-value=0.17 Score=27.19 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=14.1
Q ss_pred CcccceeeeeeecCCCC
Q 048811 200 CPSLTELSLTVLIQPDD 216 (318)
Q Consensus 200 cp~Le~L~l~~c~~~~~ 216 (318)
||.|++|+|.+|...+|
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 89999999999986544
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=88.93 E-value=0.12 Score=53.05 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCc-CCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDG-VCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
+.+..|+++.+ ....++|..+...-+|+.|+| .+......|.. ..+..|.+|++..+..... +..+....++|+.|
T Consensus 571 ~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L-~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 571 PLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDL-SDTGISHLPSGLGNLKKLIYLNLEVTGRLES-IPGILLELQSLRVL 647 (889)
T ss_pred cceEEEECCCC-CccCcCChHHhhhhhhhcccc-cCCCccccchHHHHHHhhheecccccccccc-ccchhhhcccccEE
Confidence 45666666653 344567877777778888888 66655544432 2455555555555442211 23334445666666
Q ss_pred eeeeec
Q 048811 207 SLTVLI 212 (318)
Q Consensus 207 ~l~~c~ 212 (318)
.+..-.
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 665443
No 63
>PLN03150 hypothetical protein; Provisional
Probab=88.61 E-value=0.3 Score=48.48 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=45.4
Q ss_pred cCCCCCccCCcccEEEecccceec-CCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 144 QLPGCVYSSMTLEVLRLHTAFRFA-DPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 144 ~lp~~~~~~~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+|..+..+++|+.|+| .++.+. ..| ....+++|+.|+|.++.+... +..-+..+++|+.|+|.++..
T Consensus 433 ~ip~~i~~L~~L~~L~L-s~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 433 FIPNDISKLRHLQSINL-SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred cCCHHHhCCCCCCEEEC-CCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcc
Confidence 34555556678888888 666553 223 344778888888888776543 445566778888888887765
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.28 E-value=0.88 Score=38.06 Aligned_cols=84 Identities=25% Similarity=0.318 Sum_probs=55.6
Q ss_pred CCcccEEEecccceecCC-CC-cCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecCCCCCCCceeeecccc
Q 048811 152 SMTLEVLRLHTAFRFADP-PD-GVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTL 228 (318)
Q Consensus 152 ~~~L~~L~L~~~~~~~~~-~~-~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~ 228 (318)
.+.|..|.| ....+... |. ...+|+|++|.|.+..+..-+ ++. +..||.|++|.+-+.....-.
T Consensus 63 l~rL~tLll-~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~----------- 129 (233)
T KOG1644|consen 63 LPRLHTLLL-NNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKK----------- 129 (233)
T ss_pred ccccceEEe-cCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhccc-----------
Confidence 367888888 66655443 22 236889999999998876644 444 568999999999877552110
Q ss_pred ceEEEEE-EcCccceEEEeee
Q 048811 229 NTLTFVV-LFASLRGMSYHHR 248 (318)
Q Consensus 229 ~~~~l~i-~~~~L~~L~i~~~ 248 (318)
+-+.-.+ ..|+|+.|++..-
T Consensus 130 ~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 130 NYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CceeEEEEecCcceEeehhhh
Confidence 1222233 5689999988774
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=88.13 E-value=0.019 Score=56.28 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=25.2
Q ss_pred CcccEEEecccceecCCC---CcCCCCCCceeEeeEEEeCc
Q 048811 153 MTLEVLRLHTAFRFADPP---DGVCFPQLKILQIYITHPEN 190 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~ 190 (318)
+++++|++ ....-.++. ....|.+|++|.|.+|.+..
T Consensus 84 qkt~~lkl-~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 84 QKTKVLKL-LPSPARDPTEPISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred hhheeeee-cccCCCCCCCCceeccccceeeEEecCcchhh
Confidence 56677777 554433332 22479999999999998664
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.01 E-value=0.26 Score=47.84 Aligned_cols=39 Identities=28% Similarity=0.466 Sum_probs=36.4
Q ss_pred CCCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhh
Q 048811 20 VPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHA 58 (318)
Q Consensus 20 ~~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~l 58 (318)
...|.++.||-++-.+||++|+.+++++++++|+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 467999999999999999999999999999999999864
No 67
>PF13013 F-box-like_2: F-box-like domain
Probab=86.29 E-value=0.58 Score=35.04 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=26.6
Q ss_pred cCCCCChHHHHHHhhcCChhhHhhhhhcch
Q 048811 24 RISALPDSVLSNILTFLPLEDAVATSSLSQ 53 (318)
Q Consensus 24 ~is~LPd~vL~~Ils~L~~~d~~~ts~vsk 53 (318)
.+.+||+|++..|+.+-...+.......++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 477899999999999999999988887776
No 68
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=83.21 E-value=1.4 Score=39.11 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=83.0
Q ss_pred ccCCCCCccCCcccEEEecccceec------CC---C-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811 143 MQLPGCVYSSMTLEVLRLHTAFRFA------DP---P-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI 212 (318)
Q Consensus 143 ~~lp~~~~~~~~L~~L~L~~~~~~~------~~---~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 212 (318)
+.+...+--|..|+.|.. .+..-. .+ | ....|.+|+++.++.|.- ..+..+...=|.|..+.+.+..
T Consensus 172 ~d~~hildf~~~l~~l~v-s~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVV-TPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred cchHHHHHhhhheeEEEe-cCCCCCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeeccc
Confidence 334344434567777777 443210 00 1 112588999999988863 4467777888999999998875
Q ss_pred CCCCCCCc--------eeeeccccceEEEEEEc---CccceEEEeee-------EEEeCCCeeEEEEEecccc-ceeecC
Q 048811 213 QPDDPPAN--------FIIQSTTLNTLTFVVLF---ASLRGMSYHHR-------AVIMAPNLQLIRIVDNMLM-EYEVHE 273 (318)
Q Consensus 213 ~~~~~~~~--------~~i~s~~~~~~~l~i~~---~~L~~L~i~~~-------~~i~~P~L~~L~~~~~~~~-~~~~~~ 273 (318)
..+. +.- ..-+.++.....+.... ..|..|++++. ..--+|.++.|.++.+... ...+..
T Consensus 249 ~~~~-~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~ 327 (490)
T KOG1259|consen 249 IQDV-PSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAE 327 (490)
T ss_pred cccc-ccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhh
Confidence 4211 100 01111111112222222 46888888876 3446899999999887654 223667
Q ss_pred CCCceEEEEEEE
Q 048811 274 MQSIQQATLDLQ 285 (318)
Q Consensus 274 ~~sL~~l~l~~~ 285 (318)
+++|+++.+..+
T Consensus 328 L~~L~~LDLS~N 339 (490)
T KOG1259|consen 328 LPQLQLLDLSGN 339 (490)
T ss_pred cccceEeecccc
Confidence 888999888655
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.89 E-value=0.46 Score=24.79 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=8.1
Q ss_pred CCCceeEeeEEEeCcch
Q 048811 176 PQLKILQIYITHPENRV 192 (318)
Q Consensus 176 ~~L~~L~L~~~~~~~~~ 192 (318)
++|++|+|.++.+.+++
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45555555555555444
No 70
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=77.15 E-value=5.8 Score=41.12 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=29.3
Q ss_pred cccEEEecccceecCCCCcCCCCCCceeEeeEEEe-CcchhhhhhcCCcccceeeeeeecC
Q 048811 154 TLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHP-ENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 154 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
..+...+ .+..+...+....+|.|++|-+.+... ....-...+...|.|..|++++|..
T Consensus 524 ~~rr~s~-~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~ 583 (889)
T KOG4658|consen 524 SVRRMSL-MNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS 583 (889)
T ss_pred heeEEEE-eccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc
Confidence 3444444 444333334455566666666666542 0010122355566666666666543
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=76.95 E-value=3.8 Score=36.07 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=25.7
Q ss_pred CCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecC
Q 048811 174 CFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 174 ~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+.+|+.|+|.+..|+-.+ +...+..-|.|.+|.+..|-.
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 4666777777766666544 555556666677777776654
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=76.51 E-value=4.6 Score=37.82 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=30.2
Q ss_pred HCCceEEEEEEccCccccCCCCCccCCcccEEEecccce-ecCCCCcCCCCCCceeEee
Q 048811 127 MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFR-FADPPDGVCFPQLKILQIY 184 (318)
Q Consensus 127 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~ 184 (318)
..++++|.+..+.. -..+|..+ .++|++|++ .+|. +...| ++|++|.|.
T Consensus 71 P~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~L-s~Cs~L~sLP-----~sLe~L~L~ 120 (426)
T PRK15386 71 PNELTEITIENCNN-LTTLPGSI--PEGLEKLTV-CHCPEISGLP-----ESVRSLEIK 120 (426)
T ss_pred CCCCcEEEccCCCC-cccCCchh--hhhhhheEc-cCcccccccc-----cccceEEeC
Confidence 34799999887632 23344332 368999999 7773 33223 357777764
No 73
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.55 E-value=0.2 Score=46.02 Aligned_cols=121 Identities=17% Similarity=0.108 Sum_probs=72.9
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
+.+++|+..- ..-..+|..+....+|.-|.| ....+...|...+|..|++|++....+..- =+...++.++|..|+
T Consensus 183 ~~L~~ld~~~--N~L~tlP~~lg~l~~L~~LyL-~~Nki~~lPef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 183 KRLKHLDCNS--NLLETLPPELGGLESLELLYL-RRNKIRFLPEFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHhcccch--hhhhcCChhhcchhhhHHHHh-hhcccccCCCCCccHHHHHHHhcccHHHhh-HHHHhcccccceeee
Confidence 3455554322 223356777777777777777 666555567777888888888776654322 134455677888888
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEE-EcCccceEEEeee------EEEeCCCeeEEEEEecccc
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVV-LFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM 267 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i-~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~ 267 (318)
++....... ...+ -..+|.+|++++. .....-.|+.|.+.|++.+
T Consensus 259 LRdNklke~---------------Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 259 LRDNKLKEV---------------PDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred ccccccccC---------------chHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchH
Confidence 887765311 0111 2356778888776 2333336777778886643
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=68.54 E-value=3.5 Score=19.58 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=4.6
Q ss_pred cccEEEecccce
Q 048811 154 TLEVLRLHTAFR 165 (318)
Q Consensus 154 ~L~~L~L~~~~~ 165 (318)
+|+.|+| .+|.
T Consensus 2 ~L~~L~l-~~n~ 12 (17)
T PF13504_consen 2 NLRTLDL-SNNR 12 (17)
T ss_dssp T-SEEEE-TSS-
T ss_pred ccCEEEC-CCCC
Confidence 4555555 4444
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=66.19 E-value=4.1 Score=20.68 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=8.3
Q ss_pred cccEEEecccceecC
Q 048811 154 TLEVLRLHTAFRFAD 168 (318)
Q Consensus 154 ~L~~L~L~~~~~~~~ 168 (318)
+|++|+| .+|.+..
T Consensus 1 ~L~~Ldl-s~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDL-SGNNLTS 14 (22)
T ss_dssp TESEEEE-TSSEESE
T ss_pred CccEEEC-CCCcCEe
Confidence 4666777 6665543
No 76
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=62.27 E-value=1.3 Score=41.01 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=30.6
Q ss_pred CCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 173 VCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 173 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.++.+|++|+|.+..+-. +..++.+|.+|++|.+.+..+
T Consensus 502 ~nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhhcceeccCCCchhh--CChhhccccceeEEEecCCcc
Confidence 478888999888776433 567788899999999988866
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=59.95 E-value=1 Score=35.44 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=37.7
Q ss_pred CcccEEEecccceecCCCCc--CCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 153 MTLEVLRLHTAFRFADPPDG--VCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
..|+..+| .+..+..+|.. ..||.+++|+|.+..+.+-- .-+...|+|+.|++.+...
T Consensus 53 ~el~~i~l-s~N~fk~fp~kft~kf~t~t~lNl~~neisdvP--eE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISL-SDNGFKKFPKKFTIKFPTATTLNLANNEISDVP--EELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEec-ccchhhhCCHHHhhccchhhhhhcchhhhhhch--HHHhhhHHhhhcccccCcc
Confidence 34566667 55555555432 36777888888877766532 2266778888888887766
No 78
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=59.66 E-value=7.4 Score=28.32 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.5
Q ss_pred ccCCCCChHHHHHHhhcCChhhHhh
Q 048811 23 DRISALPDSVLSNILTFLPLEDAVA 47 (318)
Q Consensus 23 d~is~LPd~vL~~Ils~L~~~d~~~ 47 (318)
..++.||-|+-..||++|+.+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6789999999999999999998754
No 79
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=59.16 E-value=2.7 Score=37.63 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=34.3
Q ss_pred CCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCcCe
Q 048811 25 ISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTSVR 63 (318)
Q Consensus 25 is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~~~ 63 (318)
+..+|+++++.|++++.-++++++|.+|+|-..+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 557999999999999999999999999999987655544
No 80
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=58.14 E-value=2.8 Score=36.44 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=38.3
Q ss_pred cCCCCChHHHHHHhhcCC-hhhHhhhhhcchhh------HhhcCcCeeeEEeeCC
Q 048811 24 RISALPDSVLSNILTFLP-LEDAVATSSLSQRW------RHAWTSVRNLCFDDGG 71 (318)
Q Consensus 24 ~is~LPd~vL~~Ils~L~-~~d~~~ts~vskrW------r~lw~~~~~L~~~~~~ 71 (318)
-+.+||.+++..|+-+|+ -+|+..++.+-..- +++|+.+-..+|.+..
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQ 255 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQ 255 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 578999999999999999 88998888764443 4678887777777654
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=56.63 E-value=4.3 Score=38.09 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=27.7
Q ss_pred CCcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 152 SMTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 152 ~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
..+|+.|++ .+..+..... ...+++|+.|+|++..+.+-. . +..++.|+.|.+.++.+
T Consensus 94 ~~~l~~l~l-~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~-l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 94 LKSLEALDL-YDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--G-LSTLTLLKELNLSGNLI 152 (414)
T ss_pred ccceeeeec-cccchhhcccchhhhhcchheecccccccccc--c-hhhccchhhheeccCcc
Confidence 345555555 4444433333 334555666655555554432 1 12233355555555554
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=51.17 E-value=25 Score=26.33 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=28.0
Q ss_pred ccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeee
Q 048811 150 YSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTV 210 (318)
Q Consensus 150 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~ 210 (318)
..|.+|+.+.+.............++++|+++.+... +..- -...+.+|+.|+.+.+..
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS
T ss_pred hCCCCCCEEEECCCeeEeChhhccccccccccccccc-cccc-ceeeeecccccccccccc
Confidence 3566888888832333222233446777888877652 2221 234577788888888854
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.92 E-value=8 Score=20.98 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=14.2
Q ss_pred CCCceeEeeEEEeCcchhhh
Q 048811 176 PQLKILQIYITHPENRVTEK 195 (318)
Q Consensus 176 ~~L~~L~L~~~~~~~~~l~~ 195 (318)
++|++|+|.+..+.+++...
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 56788888888887766433
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=44.90 E-value=9.4 Score=35.85 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=52.9
Q ss_pred HHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 126 IMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 126 ~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
...+++.|+++.......+ .+..+..|+.|++ .+..+........+++|+.+++.+..+..-.-.- +..++.|+.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~---~l~~l~~L~~L~l-~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~ 190 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLE---GLSTLTLLKELNL-SGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEE 190 (414)
T ss_pred hhhcchheecccccccccc---chhhccchhhhee-ccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHH
Confidence 3457777777776332211 1122344788888 7776666665556888888888888876643111 577888888
Q ss_pred eeeeeecC
Q 048811 206 LSLTVLIQ 213 (318)
Q Consensus 206 L~l~~c~~ 213 (318)
+.+.+...
T Consensus 191 l~l~~n~i 198 (414)
T KOG0531|consen 191 LDLGGNSI 198 (414)
T ss_pred HhccCCch
Confidence 88877765
No 85
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.26 E-value=16 Score=25.91 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=27.5
Q ss_pred CCChHHHHHHhhcCChhhHhhhhhcch--hhHhhcCcCe
Q 048811 27 ALPDSVLSNILTFLPLEDAVATSSLSQ--RWRHAWTSVR 63 (318)
Q Consensus 27 ~LPd~vL~~Ils~L~~~d~~~ts~vsk--rWr~lw~~~~ 63 (318)
.+||++=.....++.+++.++..-+-+ .|+++|+...
T Consensus 10 ~~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~G 48 (98)
T COG4829 10 RVPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRPG 48 (98)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhccc
Confidence 367777777777888888888776644 5999999544
No 86
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=30.17 E-value=3.5 Score=39.91 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=7.1
Q ss_pred CCcccceeeeeeecC
Q 048811 199 SCPSLTELSLTVLIQ 213 (318)
Q Consensus 199 ~cp~Le~L~l~~c~~ 213 (318)
+...|+.|+++..+.
T Consensus 187 ~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHL 201 (722)
T ss_pred hHHHHHHHHHhhhhh
Confidence 344455555544443
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=30.01 E-value=26 Score=18.22 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=5.8
Q ss_pred CCCceeEeeEEE
Q 048811 176 PQLKILQIYITH 187 (318)
Q Consensus 176 ~~L~~L~L~~~~ 187 (318)
++|++|+|.++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 345555554444
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=30.01 E-value=26 Score=18.22 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=5.8
Q ss_pred CCCceeEeeEEE
Q 048811 176 PQLKILQIYITH 187 (318)
Q Consensus 176 ~~L~~L~L~~~~ 187 (318)
++|++|+|.++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 345555554444
No 89
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=29.63 E-value=53 Score=20.60 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=23.0
Q ss_pred CCCceeEeeEEEeCcch---hhhhhcCCcccceeeee
Q 048811 176 PQLKILQIYITHPENRV---TEKLFCSCPSLTELSLT 209 (318)
Q Consensus 176 ~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~ 209 (318)
.+|+.+.+.+..-.... +..++.+.+.||.+.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 46666666544433322 67788899999998875
No 90
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=28.46 E-value=1.8 Score=41.79 Aligned_cols=129 Identities=18% Similarity=0.232 Sum_probs=66.1
Q ss_pred CCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeee
Q 048811 145 LPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQ 224 (318)
Q Consensus 145 lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~ 224 (318)
+|..+.....|+.|+| ...++...|....+--|+.|-+.+.++...- .=+..-+.|..|..+.|....-
T Consensus 113 ip~~i~~L~~lt~l~l-s~NqlS~lp~~lC~lpLkvli~sNNkl~~lp--~~ig~~~tl~~ld~s~nei~sl-------- 181 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDL-SSNQLSHLPDGLCDLPLKVLIVSNNKLTSLP--EEIGLLPTLAHLDVSKNEIQSL-------- 181 (722)
T ss_pred cchhhhhhhHHHHhhh-ccchhhcCChhhhcCcceeEEEecCccccCC--cccccchhHHHhhhhhhhhhhc--------
Confidence 3444444445555555 4444444444444555666665555543321 1122445566666666554110
Q ss_pred ccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc--ceeecCCCCceEEEEEEEeccCC
Q 048811 225 STTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM--EYEVHEMQSIQQATLDLQHWESD 290 (318)
Q Consensus 225 s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~--~~~~~~~~sL~~l~l~~~~~~~~ 290 (318)
..--....+|+.|.+... -....-.|..|+++.+... ...+..|..|+.+.|+-+..+..
T Consensus 182 ------psql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 182 ------PSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred ------hHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence 000012234455544443 1222445778888887654 45677888999988877755443
No 91
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=27.55 E-value=1.1e+02 Score=20.51 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCeeEEEEEecccc-------ceeecCCCCceEEEEEEEec
Q 048811 254 PNLQLIRIVDNMLM-------EYEVHEMQSIQQATLDLQHW 287 (318)
Q Consensus 254 P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l~~~~~ 287 (318)
.+|+.+.+.+..+. .+.+.+.+.|+.+.|.....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~ 45 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETS 45 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecC
Confidence 35788888776554 34678999999999987754
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.55 E-value=89 Score=18.79 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=12.4
Q ss_pred CCeeEEEEEeccccceeecCCC-CceEEEE
Q 048811 254 PNLQLIRIVDNMLMEYEVHEMQ-SIQQATL 282 (318)
Q Consensus 254 P~L~~L~~~~~~~~~~~~~~~~-sL~~l~l 282 (318)
+++++|.+..........+.+| +|+++.+
T Consensus 12 ~~l~~L~~g~~fn~~i~~~~lP~sl~~L~f 41 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIEPGSLPNSLKSLSF 41 (44)
T ss_pred CCCeEEEECCccCccCCCCccCCCceEEEe
Confidence 4455555533333222233343 3555544
No 93
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=24.52 E-value=28 Score=32.47 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=30.0
Q ss_pred CCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 173 VCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 173 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
..+|+|++|+|.+..++.-. ...+.+...|++|.|.....
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIE-DGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred hhcccceEeccCCCccchhh-hhhhcchhhhhhhhcCcchH
Confidence 46788888888888876643 55677888888888877765
No 94
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=21.30 E-value=3.4e+02 Score=20.48 Aligned_cols=115 Identities=8% Similarity=0.070 Sum_probs=65.0
Q ss_pred HHHHHHHhhCCCcceEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCC--ccCCcccEEEecccc
Q 048811 87 NNFIESVMAGTDPVSIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCV--YSSMTLEVLRLHTAF 164 (318)
Q Consensus 87 ~~~~~~v~~~~~~~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~ 164 (318)
+.+...+.+ ..++.+++|.+.. .....+...+...-...+++|.+ ........+...+ -..++++.+.+ .+.
T Consensus 5 ~~l~~~l~s-~~~l~vk~l~i~~---~~~~~~~~iL~~l~p~~L~~i~i-~~~~~~~~~~~i~~~eqWk~~k~~~i-~~~ 78 (142)
T PF01827_consen 5 EKLQEILKS-KHKLKVKKLKINS---LNQSEVLSILPFLDPGVLEEIRI-NDEEEEEDFDEIVELEQWKNAKEFKI-GGF 78 (142)
T ss_pred HHHHHHHcC-CCCeeEEEEEEEc---CCHHHHHHHHhcCCCCcCEEEEC-cCcccccchhheeehHHhceeheeEe-ccc
Confidence 334445555 5555677887765 23345556666655567899998 2111111222211 12367888888 554
Q ss_pred eecCCCCcCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeee
Q 048811 165 RFADPPDGVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSL 208 (318)
Q Consensus 165 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l 208 (318)
.... .....|.++..+.+.--.++.++ +...+..-|..+...+
T Consensus 79 ~~~~-~~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 79 VIDS-FPLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred cccc-HHHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 4321 12346778888888666666655 4444556677777666
Done!