Query 048811
Match_columns 318
No_of_seqs 163 out of 1495
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 23:53:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.8 3.8E-21 1.3E-25 173.3 -6.3 254 21-315 5-282 (336)
2 2p1m_B Transport inhibitor res 99.8 6.6E-20 2.3E-24 177.5 0.5 174 21-212 2-195 (594)
3 3ogk_B Coronatine-insensitive 99.7 2.9E-19 1E-23 172.9 0.3 265 21-313 5-350 (592)
4 4fcg_A Uncharacterized protein 99.0 6.8E-10 2.3E-14 99.6 9.0 189 101-317 82-289 (328)
5 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 4.8E-10 1.6E-14 72.4 3.8 39 21-59 5-43 (53)
6 4fcg_A Uncharacterized protein 98.8 2E-09 7E-14 96.5 3.8 163 128-315 127-311 (328)
7 4ezg_A Putative uncharacterize 98.6 8.4E-09 2.9E-13 85.4 1.1 148 128-317 44-193 (197)
8 3rfs_A Internalin B, repeat mo 98.6 7E-09 2.4E-13 90.3 -0.2 62 150-213 82-145 (272)
9 4fmz_A Internalin; leucine ric 98.5 3.5E-08 1.2E-12 88.6 3.5 15 301-315 329-343 (347)
10 2o6q_A Variable lymphocyte rec 98.5 8.8E-08 3E-12 83.1 5.8 60 152-213 84-145 (270)
11 2ast_B S-phase kinase-associat 98.5 7.7E-09 2.6E-13 92.5 -1.0 177 119-315 61-257 (336)
12 4ezg_A Putative uncharacterize 98.5 2.2E-08 7.6E-13 82.7 1.6 102 101-213 45-148 (197)
13 1h6u_A Internalin H; cell adhe 98.5 2.4E-08 8.2E-13 88.6 1.0 79 128-213 63-141 (308)
14 1ozn_A Reticulon 4 receptor; N 98.5 4E-08 1.4E-12 85.9 2.3 166 129-316 57-236 (285)
15 4fmz_A Internalin; leucine ric 98.5 3.8E-08 1.3E-12 88.4 2.0 161 128-317 88-255 (347)
16 1h6u_A Internalin H; cell adhe 98.5 3.3E-08 1.1E-12 87.7 1.6 79 128-213 41-119 (308)
17 3zyi_A Leucine-rich repeat-con 98.5 6.3E-08 2.1E-12 90.5 3.4 83 128-213 99-183 (452)
18 2p1m_B Transport inhibitor res 98.4 9.5E-08 3.3E-12 92.0 4.4 105 101-211 106-221 (594)
19 1ogq_A PGIP-2, polygalacturona 98.4 2.5E-08 8.5E-13 88.7 0.1 182 128-317 76-280 (313)
20 3ogk_B Coronatine-insensitive 98.4 1.9E-08 6.4E-13 96.9 -0.9 131 174-316 376-524 (592)
21 1h6t_A Internalin B; cell adhe 98.4 3E-08 1E-12 87.3 -0.3 61 149-213 86-146 (291)
22 3zyj_A Leucine-rich repeat-con 98.4 7.6E-08 2.6E-12 89.6 2.4 74 237-316 206-290 (440)
23 1xku_A Decorin; proteoglycan, 98.4 3.5E-08 1.2E-12 88.1 0.1 60 153-213 121-183 (330)
24 2z80_A TOLL-like receptor 2, v 98.4 1.1E-07 3.9E-12 85.6 3.3 62 151-213 122-186 (353)
25 2ca6_A RAN GTPase-activating p 98.4 5.6E-09 1.9E-13 95.5 -5.5 175 128-317 60-286 (386)
26 2ell_A Acidic leucine-rich nuc 98.4 5.8E-07 2E-11 72.0 7.0 84 128-213 24-107 (168)
27 3zyj_A Leucine-rich repeat-con 98.4 5.1E-08 1.7E-12 90.8 0.8 60 151-212 110-171 (440)
28 3t6q_A CD180 antigen; protein- 98.4 7.7E-08 2.6E-12 93.0 1.9 17 300-316 471-487 (606)
29 2z80_A TOLL-like receptor 2, v 98.4 3.1E-07 1E-11 82.8 5.7 166 129-316 53-233 (353)
30 1ogq_A PGIP-2, polygalacturona 98.4 8.6E-08 2.9E-12 85.2 2.0 202 101-316 77-302 (313)
31 2z7x_B TOLL-like receptor 1, v 98.4 3.7E-07 1.3E-11 86.6 6.4 176 120-317 293-480 (520)
32 2z66_A Variable lymphocyte rec 98.4 1.3E-08 4.6E-13 89.9 -3.4 141 128-285 78-233 (306)
33 1o6v_A Internalin A; bacterial 98.4 2.1E-07 7.2E-12 87.2 4.5 59 128-190 90-148 (466)
34 2z66_A Variable lymphocyte rec 98.4 1.3E-07 4.5E-12 83.4 2.9 166 129-317 29-211 (306)
35 1xeu_A Internalin C; cellular 98.4 6.3E-08 2.2E-12 83.9 0.9 136 128-286 41-183 (263)
36 2z81_A CD282 antigen, TOLL-lik 98.4 3.2E-07 1.1E-11 87.5 5.7 82 129-213 27-110 (549)
37 1ozn_A Reticulon 4 receptor; N 98.4 3.6E-08 1.2E-12 86.2 -0.9 167 128-317 32-213 (285)
38 2o6q_A Variable lymphocyte rec 98.3 1.7E-07 5.7E-12 81.3 3.0 166 128-316 37-216 (270)
39 2z63_A TOLL-like receptor 4, v 98.3 1.5E-07 5.2E-12 90.0 3.0 55 128-187 282-336 (570)
40 3m19_A Variable lymphocyte rec 98.3 1.2E-07 4.1E-12 81.4 2.0 158 129-302 36-206 (251)
41 1m9s_A Internalin B; cell inva 98.3 3.7E-08 1.2E-12 95.5 -1.4 136 128-285 65-207 (605)
42 3e4g_A ATP synthase subunit S, 98.3 7.2E-08 2.5E-12 78.0 0.2 70 144-214 52-127 (176)
43 3zyi_A Leucine-rich repeat-con 98.3 8.7E-08 3E-12 89.5 0.8 165 128-316 123-301 (452)
44 3o6n_A APL1; leucine-rich repe 98.3 8.6E-07 2.9E-11 80.9 7.3 176 129-317 94-284 (390)
45 2id5_A Lingo-1, leucine rich r 98.3 1.6E-07 5.6E-12 88.1 2.6 83 128-213 104-188 (477)
46 1xku_A Decorin; proteoglycan, 98.3 1.5E-07 5E-12 84.1 2.0 177 128-317 76-275 (330)
47 1o6v_A Internalin A; bacterial 98.3 2.6E-07 8.8E-12 86.6 3.4 160 128-317 68-233 (466)
48 2id5_A Lingo-1, leucine rich r 98.3 2.2E-07 7.7E-12 87.1 3.0 81 129-213 81-164 (477)
49 3oja_A Leucine-rich immune mol 98.3 7.6E-07 2.6E-11 84.1 6.4 157 129-317 35-203 (487)
50 3rgz_A Protein brassinosteroid 98.3 3.5E-07 1.2E-11 91.1 4.2 144 150-315 197-353 (768)
51 3rfs_A Internalin B, repeat mo 98.3 9.9E-08 3.4E-12 82.9 0.0 167 127-317 40-217 (272)
52 1h6t_A Internalin B; cell adhe 98.3 9.5E-08 3.3E-12 84.0 -0.4 160 127-316 45-211 (291)
53 3o53_A Protein LRIM1, AGAP0063 98.3 7.7E-07 2.6E-11 79.0 5.5 171 114-317 18-203 (317)
54 3vq2_A TLR4, TOLL-like recepto 98.3 1.4E-07 4.7E-12 91.2 0.4 54 128-186 285-338 (606)
55 1z7x_W Ribonuclease inhibitor; 98.2 4.1E-08 1.4E-12 91.6 -3.2 85 128-213 28-125 (461)
56 2z63_A TOLL-like receptor 4, v 98.2 2.3E-06 7.7E-11 81.9 8.8 62 145-212 274-336 (570)
57 2e31_A FBS1, F-box only protei 98.2 5.6E-07 1.9E-11 78.6 4.0 37 22-58 48-85 (297)
58 3t6q_A CD180 antigen; protein- 98.2 8E-08 2.7E-12 92.9 -1.5 81 129-211 302-386 (606)
59 3bz5_A Internalin-J, INLJ; leu 98.2 5.6E-07 1.9E-11 84.3 4.1 75 128-212 85-159 (457)
60 3bz5_A Internalin-J, INLJ; leu 98.2 6E-07 2E-11 84.1 4.1 170 128-317 64-245 (457)
61 3vq2_A TLR4, TOLL-like recepto 98.2 1.9E-06 6.6E-11 83.1 7.8 60 149-213 281-340 (606)
62 3rgz_A Protein brassinosteroid 98.2 3.8E-07 1.3E-11 90.9 2.8 163 129-316 101-280 (768)
63 3o6n_A APL1; leucine-rich repe 98.2 1.7E-06 5.9E-11 78.9 7.1 174 128-317 117-307 (390)
64 3v47_A TOLL-like receptor 5B a 98.2 5.8E-07 2E-11 83.6 3.5 82 129-212 80-165 (455)
65 3oja_B Anopheles plasmodium-re 98.2 1.9E-06 6.5E-11 83.3 7.0 177 128-317 99-290 (597)
66 2ft3_A Biglycan; proteoglycan, 98.2 1.4E-07 4.7E-12 84.4 -1.2 58 151-211 100-157 (332)
67 3e4g_A ATP synthase subunit S, 98.2 3.8E-08 1.3E-12 79.6 -4.6 42 174-216 59-100 (176)
68 2je0_A Acidic leucine-rich nuc 98.2 8.1E-07 2.8E-11 69.6 3.1 83 129-213 18-100 (149)
69 2z7x_B TOLL-like receptor 1, v 98.2 2.1E-06 7.1E-11 81.4 6.4 123 144-286 14-149 (520)
70 1m9s_A Internalin B; cell inva 98.2 1.7E-07 6E-12 90.7 -1.2 160 127-316 42-208 (605)
71 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 1.4E-06 4.9E-11 83.5 5.1 176 120-317 322-509 (562)
72 3v47_A TOLL-like receptor 5B a 98.1 3.8E-07 1.3E-11 84.9 0.7 86 128-214 54-142 (455)
73 3oja_A Leucine-rich immune mol 98.1 4.3E-07 1.5E-11 85.7 1.1 181 101-317 35-226 (487)
74 1wwl_A Monocyte differentiatio 98.1 4.4E-07 1.5E-11 80.4 1.1 54 254-317 253-308 (312)
75 3m19_A Variable lymphocyte rec 98.1 6.1E-07 2.1E-11 76.9 1.7 143 153-316 35-190 (251)
76 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 1.3E-05 4.5E-10 76.7 11.2 75 129-212 101-180 (562)
77 2ca6_A RAN GTPase-activating p 98.1 4.2E-08 1.4E-12 89.7 -6.2 178 128-317 94-315 (386)
78 3l2o_B F-box only protein 4; s 98.1 6.9E-07 2.4E-11 77.3 1.9 34 24-57 4-37 (312)
79 3goz_A Leucine-rich repeat-con 98.1 4.4E-07 1.5E-11 82.2 0.5 177 128-317 80-296 (362)
80 1p9a_G Platelet glycoprotein I 98.1 9.5E-07 3.3E-11 77.5 2.6 161 129-317 11-184 (290)
81 1wwl_A Monocyte differentiatio 98.1 2.7E-06 9.3E-11 75.3 5.6 169 127-317 94-286 (312)
82 2ft3_A Biglycan; proteoglycan, 98.1 2.6E-07 9E-12 82.5 -1.3 161 128-317 102-276 (332)
83 3oja_B Anopheles plasmodium-re 98.1 3.2E-06 1.1E-10 81.7 6.2 174 128-317 123-313 (597)
84 2z62_A TOLL-like receptor 4, v 98.1 5.3E-07 1.8E-11 78.3 0.6 82 128-213 52-136 (276)
85 2z81_A CD282 antigen, TOLL-lik 98.1 2.9E-06 1E-10 80.8 5.6 82 129-213 75-160 (549)
86 3o53_A Protein LRIM1, AGAP0063 98.1 2.9E-07 1E-11 81.8 -1.5 39 175-213 143-181 (317)
87 3j0a_A TOLL-like receptor 5; m 98.1 8.5E-06 2.9E-10 82.0 8.7 84 128-213 73-160 (844)
88 4eco_A Uncharacterized protein 98.0 1.2E-06 4.2E-11 85.4 2.3 78 239-316 489-577 (636)
89 1p9a_G Platelet glycoprotein I 98.0 7.1E-07 2.4E-11 78.4 0.1 165 128-316 31-206 (290)
90 1ziw_A TOLL-like receptor 3; i 98.0 2.8E-06 9.6E-11 83.2 4.2 58 129-188 382-442 (680)
91 4glp_A Monocyte differentiatio 98.0 5.8E-07 2E-11 79.5 -0.7 72 238-317 224-306 (310)
92 3j0a_A TOLL-like receptor 5; m 98.0 7.4E-06 2.5E-10 82.4 7.2 61 128-190 97-162 (844)
93 1z7x_W Ribonuclease inhibitor; 98.0 4.2E-08 1.4E-12 91.5 -8.6 84 129-213 86-182 (461)
94 2xwt_C Thyrotropin receptor; s 98.0 6.5E-06 2.2E-10 69.7 5.1 164 128-317 31-217 (239)
95 4glp_A Monocyte differentiatio 98.0 2.2E-06 7.5E-11 75.8 2.0 144 127-285 144-304 (310)
96 4ecn_A Leucine-rich repeat pro 97.9 1.9E-06 6.6E-11 86.7 1.7 78 239-316 729-817 (876)
97 3g06_A SSPH2 (leucine-rich rep 97.9 2.1E-05 7.3E-10 76.3 8.5 127 128-285 61-191 (622)
98 2z62_A TOLL-like receptor 4, v 97.9 2.9E-06 1E-10 73.5 2.1 148 128-290 76-239 (276)
99 4ecn_A Leucine-rich repeat pro 97.9 1.7E-06 5.8E-11 87.1 0.6 80 129-213 549-631 (876)
100 2ra8_A Uncharacterized protein 97.9 5E-06 1.7E-10 75.3 3.6 190 87-285 95-317 (362)
101 1ds9_A Outer arm dynein; leuci 97.9 3.3E-07 1.1E-11 75.6 -4.0 63 148-213 43-105 (198)
102 3v7d_B Cell division control p 97.9 3.7E-06 1.3E-10 77.9 2.1 42 20-61 10-51 (464)
103 1xeu_A Internalin C; cellular 97.9 2.9E-06 1E-10 73.3 1.2 117 128-267 63-185 (263)
104 3goz_A Leucine-rich repeat-con 97.9 1.1E-06 3.9E-11 79.4 -1.5 175 128-317 22-237 (362)
105 3g06_A SSPH2 (leucine-rich rep 97.9 8E-06 2.7E-10 79.3 4.3 146 101-285 62-211 (622)
106 2v9t_B SLIT homolog 2 protein 97.8 1.9E-05 6.6E-10 66.2 5.8 120 153-287 32-164 (220)
107 2o6s_A Variable lymphocyte rec 97.8 7E-06 2.4E-10 68.0 3.0 61 151-213 50-112 (208)
108 3e6j_A Variable lymphocyte rec 97.8 3.2E-05 1.1E-09 65.2 7.0 135 153-302 40-186 (229)
109 4eco_A Uncharacterized protein 97.8 1.4E-06 4.6E-11 85.1 -1.8 81 128-213 305-389 (636)
110 3cvr_A Invasion plasmid antige 97.8 2.3E-05 7.9E-10 75.2 6.6 150 128-317 80-242 (571)
111 1a9n_A U2A', U2A'; complex (nu 97.8 1.4E-05 4.7E-10 64.5 4.2 59 151-213 17-76 (176)
112 3un9_A NLR family member X1; l 97.8 1.5E-07 5E-12 85.8 -9.4 91 122-213 66-167 (372)
113 1ziw_A TOLL-like receptor 3; i 97.7 1.4E-05 4.7E-10 78.2 3.6 19 299-317 474-492 (680)
114 3cvr_A Invasion plasmid antige 97.7 2.4E-05 8.1E-10 75.2 4.6 148 101-286 81-241 (571)
115 2ra8_A Uncharacterized protein 97.7 2.4E-05 8.2E-10 70.8 4.1 62 253-316 251-318 (362)
116 2o6s_A Variable lymphocyte rec 97.7 7E-06 2.4E-10 68.0 0.5 128 142-286 19-159 (208)
117 2ovr_B FBW7, F-BOX/WD repeat p 97.7 2.7E-05 9.1E-10 71.8 4.5 40 19-58 13-52 (445)
118 2xwt_C Thyrotropin receptor; s 97.7 1.2E-05 4.2E-10 68.0 2.0 162 128-316 55-237 (239)
119 3e6j_A Variable lymphocyte rec 97.7 4.3E-05 1.5E-09 64.4 5.2 122 128-266 40-171 (229)
120 2v70_A SLIT-2, SLIT homolog 2 97.6 4.5E-06 1.6E-10 70.1 -1.3 128 143-287 24-165 (220)
121 1p22_A F-BOX/WD-repeat protein 97.6 1.3E-05 4.3E-10 73.9 1.5 37 21-57 7-47 (435)
122 4g8a_A TOLL-like receptor 4; l 97.6 7.1E-05 2.4E-09 72.1 6.1 33 253-285 147-183 (635)
123 1jl5_A Outer protein YOPM; leu 97.6 2.2E-05 7.4E-10 73.4 2.1 77 128-213 131-207 (454)
124 2xot_A Amphoterin-induced prot 97.6 0.00013 4.4E-09 65.8 7.2 142 154-316 40-200 (361)
125 2v70_A SLIT-2, SLIT homolog 2 97.5 6.3E-05 2.2E-09 63.0 3.7 123 129-266 33-165 (220)
126 1a9n_A U2A', U2A'; complex (nu 97.5 5.1E-06 1.8E-10 67.0 -3.3 81 129-213 20-100 (176)
127 1jl5_A Outer protein YOPM; leu 97.4 0.0002 6.8E-09 66.8 7.0 35 154-189 216-250 (454)
128 2xot_A Amphoterin-induced prot 97.4 0.00013 4.4E-09 65.8 4.5 142 129-287 40-201 (361)
129 2ell_A Acidic leucine-rich nuc 97.3 0.0002 6.9E-09 56.8 4.4 106 101-213 25-132 (168)
130 1w8a_A SLIT protein; signaling 97.2 0.00053 1.8E-08 55.9 6.5 67 143-213 21-90 (192)
131 2o6r_A Variable lymphocyte rec 97.2 0.00089 3.1E-08 53.5 7.5 104 153-287 28-136 (177)
132 2je0_A Acidic leucine-rich nuc 97.1 0.00011 3.6E-09 57.3 1.1 82 128-213 42-125 (149)
133 1dce_A Protein (RAB geranylger 97.1 0.00018 6.1E-09 69.1 2.9 121 154-311 442-566 (567)
134 2wfh_A SLIT homolog 2 protein 97.1 0.00051 1.8E-08 56.1 4.8 59 153-213 31-90 (193)
135 2v9t_B SLIT homolog 2 protein 97.1 0.00071 2.4E-08 56.4 5.6 139 156-316 14-163 (220)
136 4ay9_X Follicle-stimulating ho 97.0 0.00052 1.8E-08 61.5 4.5 82 128-213 30-116 (350)
137 1w8a_A SLIT protein; signaling 97.0 0.00039 1.3E-08 56.7 3.3 118 155-287 10-138 (192)
138 3un9_A NLR family member X1; l 96.9 1.3E-05 4.5E-10 72.9 -6.9 150 153-317 72-251 (372)
139 4g8a_A TOLL-like receptor 4; l 96.9 0.00014 5E-09 69.9 -0.4 30 254-283 518-550 (635)
140 3sb4_A Hypothetical leucine ri 96.8 0.0029 1E-07 56.0 7.9 55 152-208 100-155 (329)
141 1io0_A Tropomodulin; LRR prote 96.8 5.3E-05 1.8E-09 61.7 -3.4 62 151-213 34-105 (185)
142 1ds9_A Outer arm dynein; leuci 96.7 0.00028 9.6E-09 57.8 0.1 102 128-248 48-150 (198)
143 2o6r_A Variable lymphocyte rec 96.7 0.00064 2.2E-08 54.4 2.1 82 128-213 28-112 (177)
144 1dce_A Protein (RAB geranylger 96.6 0.0013 4.4E-08 63.1 3.8 78 129-213 442-520 (567)
145 2wfh_A SLIT homolog 2 protein 96.5 0.0021 7.3E-08 52.3 4.5 82 128-213 31-114 (193)
146 4b8c_D Glucose-repressible alc 96.5 0.00048 1.6E-08 68.1 0.1 108 146-286 217-327 (727)
147 3g39_A Variable lymphocyte rec 96.4 0.0072 2.5E-07 48.0 6.8 59 153-213 30-90 (170)
148 4b8c_D Glucose-repressible alc 96.4 0.00028 9.6E-09 69.8 -2.1 102 128-248 224-326 (727)
149 2r9u_A Variable lymphocyte rec 96.3 0.0096 3.3E-07 47.5 6.9 59 153-213 33-93 (174)
150 2r9u_A Variable lymphocyte rec 96.1 0.0064 2.2E-07 48.6 4.9 82 128-213 33-117 (174)
151 3g39_A Variable lymphocyte rec 96.0 0.0079 2.7E-07 47.8 4.9 82 128-213 30-114 (170)
152 4ay9_X Follicle-stimulating ho 95.6 0.071 2.4E-06 47.3 10.2 128 142-284 21-163 (350)
153 1io0_A Tropomodulin; LRR prote 95.5 0.0016 5.4E-08 52.8 -1.2 99 114-213 20-135 (185)
154 2ifg_A High affinity nerve gro 94.4 0.023 7.8E-07 50.4 3.3 80 129-213 32-115 (347)
155 4fdw_A Leucine rich hypothetic 94.3 0.011 3.8E-07 54.0 1.1 57 151-210 178-235 (401)
156 4fdw_A Leucine rich hypothetic 93.2 0.43 1.5E-05 43.3 9.7 18 195-212 265-282 (401)
157 3sb4_A Hypothetical leucine ri 92.9 0.13 4.6E-06 45.1 5.6 35 175-210 225-259 (329)
158 2ifg_A High affinity nerve gro 92.4 0.074 2.5E-06 47.0 3.3 67 144-213 23-92 (347)
159 3rw6_A Nuclear RNA export fact 92.0 0.022 7.4E-07 49.0 -0.8 80 128-208 170-258 (267)
160 4gt6_A Cell surface protein; l 85.7 1.4 4.9E-05 39.4 6.5 55 253-316 333-389 (394)
161 3rw6_A Nuclear RNA export fact 85.5 0.39 1.3E-05 41.1 2.5 59 152-213 169-232 (267)
162 1pgv_A TMD-1, tropomodulin TMD 81.1 0.075 2.6E-06 43.3 -3.7 62 152-214 40-111 (197)
163 4fs7_A Uncharacterized protein 80.4 0.57 2E-05 42.1 1.6 31 253-283 342-374 (394)
164 1pgv_A TMD-1, tropomodulin TMD 80.1 0.18 6.2E-06 41.0 -1.7 96 115-211 26-136 (197)
165 4gt6_A Cell surface protein; l 71.6 4.5 0.00015 36.1 5.0 57 150-209 285-342 (394)
166 4h09_A Hypothetical leucine ri 69.0 5 0.00017 35.4 4.7 15 268-282 326-340 (379)
167 4fs7_A Uncharacterized protein 63.2 4.4 0.00015 36.2 3.1 60 149-210 293-352 (394)
168 4h09_A Hypothetical leucine ri 53.8 12 0.00041 32.9 4.3 61 149-211 236-296 (379)
169 3rfe_A Platelet glycoprotein I 37.2 22 0.00075 26.2 2.8 35 153-188 31-67 (130)
170 2lz0_A Uncharacterized protein 34.6 38 0.0013 23.7 3.5 35 151-185 18-52 (100)
171 1tns_A MU-transposase; DNA-bin 33.1 24 0.00084 23.5 2.1 21 20-40 45-65 (76)
172 2kwv_A RAD30 homolog B, DNA po 22.9 59 0.002 19.2 2.2 21 20-40 16-36 (48)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=3.8e-21 Score=173.35 Aligned_cols=254 Identities=18% Similarity=0.174 Sum_probs=139.1
Q ss_pred CCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcC---cCeeeEEeeCCCCCCCCCCCCchhhHHHHHHHHhhCC
Q 048811 21 PEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWT---SVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGT 97 (318)
Q Consensus 21 ~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~---~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 97 (318)
+...++.||||++.+||++|+.+|+++++.|||+|+++.. ....+++.... + . ...+...+..
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~-~--------~---~~~~~~~~~~-- 70 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN-L--------H---PDVTGRLLSQ-- 70 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB-C--------C---HHHHHHHHHT--
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccccc-C--------C---HHHHHhhhhc--
Confidence 3456899999999999999999999999999999999843 22345555443 3 1 1112222211
Q ss_pred CcceEeEEEEEeeCCC-CCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCC
Q 048811 98 DPVSIHTFSLRSVNAI-RRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVC 174 (318)
Q Consensus 98 ~~~~l~~l~l~~~~~~-~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~ 174 (318)
.++.+.+....-. .... .....++++|+++.+......+|..+..|++|++|+| .++.+... .....
T Consensus 71 ---~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 71 ---GVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTLAK 140 (336)
T ss_dssp ---TCSEEECTTCEECSCCCS------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC-TTCBCCHHHHHHHTT
T ss_pred ---cceEEEcCCccccccchh------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC-cCcccCHHHHHHHhc
Confidence 2445444321100 0000 0012466666666543222224445556677777777 66643321 11224
Q ss_pred CCCCceeEeeEE-EeCcchhhhhhcCCcccceeeeeee-cCCCCCCCceeeeccccceEEEEEEcC-ccceEEEeee---
Q 048811 175 FPQLKILQIYIT-HPENRVTEKLFCSCPSLTELSLTVL-IQPDDPPANFIIQSTTLNTLTFVVLFA-SLRGMSYHHR--- 248 (318)
Q Consensus 175 ~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~l~~c-~~~~~~~~~~~i~s~~~~~~~l~i~~~-~L~~L~i~~~--- 248 (318)
+++|++|+|.++ .+.+..+..++.+||+|++|++.+| ...+. ......-..+ +|+.|++++|
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------HVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------HHHHHHHHSCTTCCEEECCSCGGG
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------HHHHHHHhcccCCCEEEeCCCccc
Confidence 677777777777 4544446666677777777777777 43100 0000001345 6777777665
Q ss_pred --------EEEeCCCeeEEEEEeccc-c---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811 249 --------AVIMAPNLQLIRIVDNML-M---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG 315 (318)
Q Consensus 249 --------~~i~~P~L~~L~~~~~~~-~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~ 315 (318)
..-..|+|++|.+.++.. . ...+.++++|+++++..+.. ..... ...+..+++++.|.++++
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~-~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD----IIPET-LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT----CCGGG-GGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC----CCHHH-HHHHhcCCCCCEEeccCc
Confidence 112466777777766652 1 22455667777776654421 10111 133455777777776654
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=6.6e-20 Score=177.45 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=97.3
Q ss_pred CCccCCCCChHHHHHHhhcCC-hhhHhhhhhcchhhHhhcC-cCeeeEEeeCCCCCCCCCCCCchhhHHHHHHHHhhCCC
Q 048811 21 PEDRISALPDSVLSNILTFLP-LEDAVATSSLSQRWRHAWT-SVRNLCFDDGGPMGAAADNPDLVDEFNNFIESVMAGTD 98 (318)
Q Consensus 21 ~~d~is~LPd~vL~~Ils~L~-~~d~~~ts~vskrWr~lw~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 98 (318)
..|+++.||||||.+||+||+ .+|+++++.|||||+++.. ....+.+.... . ..... .+. +.
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~-~----------~~~~~---~~~--~~ 65 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCY-A----------VSPAT---VIR--RF 65 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTT-S----------SCHHH---HHH--HC
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccc-c----------cCHHH---HHh--hC
Confidence 358999999999999999999 9999999999999998721 11123332221 1 00111 111 12
Q ss_pred cceEeEEEEEeeCC---------CCCCChhHHHHHHHH--CCceEEEEEEccCccccCCCCCccCCcccEEEecccce-e
Q 048811 99 PVSIHTFSLRSVNA---------IRRDRFPLWVSQAIM--RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFR-F 166 (318)
Q Consensus 99 ~~~l~~l~l~~~~~---------~~~~~~~~wl~~a~~--~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~-~ 166 (318)
+ .++++.+..... .....+..|+..... .++++|+++.+......+......|++|++|+| .+|. +
T Consensus 66 ~-~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L-~~~~~~ 143 (594)
T 2p1m_B 66 P-KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL-SSCEGF 143 (594)
T ss_dssp T-TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE-ESCEEE
T ss_pred C-CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC-CCcCCC
Confidence 2 377777775331 112445677776553 578888887653222111111124677777777 6663 2
Q ss_pred cC--CCC-cCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeec
Q 048811 167 AD--PPD-GVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLI 212 (318)
Q Consensus 167 ~~--~~~-~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~ 212 (318)
.. .+. ...+++|++|+|.++.+.+.. +..+...||+|++|++.+|.
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 21 111 125777777777776655433 45555567777777777665
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=2.9e-19 Score=172.94 Aligned_cols=265 Identities=13% Similarity=0.174 Sum_probs=133.3
Q ss_pred CCccCC----CCChHHHHHHhhcC-ChhhHhhhhhcchhhHhhcCcCee-eEEeeCCCCCCCCCCCCchhhHHHHHHHHh
Q 048811 21 PEDRIS----ALPDSVLSNILTFL-PLEDAVATSSLSQRWRHAWTSVRN-LCFDDGGPMGAAADNPDLVDEFNNFIESVM 94 (318)
Q Consensus 21 ~~d~is----~LPd~vL~~Ils~L-~~~d~~~ts~vskrWr~lw~~~~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (318)
+.|+++ .||||++.+||+|| +.+|+++++.|||||++++...+. +.+. .. +. .... .+.
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~-~~---------~~~~----~~~ 69 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LC-YT---------ATPD----RLS 69 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CG-GG---------SCHH----HHH
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-ec-cc---------cChH----HHH
Confidence 345555 89999999999999 799999999999999987543221 2211 11 10 0000 011
Q ss_pred hCCCcceEeEEEEEeeCC---------CCCCChhHHHHHH----------------------------HHCCceEEEEEE
Q 048811 95 AGTDPVSIHTFSLRSVNA---------IRRDRFPLWVSQA----------------------------IMRNVREMEIDI 137 (318)
Q Consensus 95 ~~~~~~~l~~l~l~~~~~---------~~~~~~~~wl~~a----------------------------~~~~l~~L~l~~ 137 (318)
+ +.+ .++++.++.+.. ........|+... ...++++|++..
T Consensus 70 ~-~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 70 R-RFP-NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp H-HCT-TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred H-hCC-CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 1 111 244554433110 0112223333333 223355555544
Q ss_pred cc-CccccCCCCCccCCcccEEEecccceecCCC------CcCCCCCCceeEeeEEEeC---cchhhhhhcCCcccceee
Q 048811 138 IQ-YAPMQLPGCVYSSMTLEVLRLHTAFRFADPP------DGVCFPQLKILQIYITHPE---NRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 138 ~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~------~~~~~~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~ 207 (318)
+. .....++.....|++|++|+| .+|.+.+.. ....+++|++|+|.++.+. ...+..++.+||+|++|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L-~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLM-EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEEC-TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCcCHHHHHHHHhhCCCCCEEEC-ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 32 111122222335566666666 555543321 1125667777777666654 223666677777777777
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEE-----------------EcCccceEEEeee-------EEEeCCCeeEEEEEe
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVV-----------------LFASLRGMSYHHR-------AVIMAPNLQLIRIVD 263 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i-----------------~~~~L~~L~i~~~-------~~i~~P~L~~L~~~~ 263 (318)
+.+|..... ..+--..+ ....+.+ ..++|+.|.++++ ..-..|+|++|.+.+
T Consensus 227 L~~~~~~~l--~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 227 VGDFEILEL--VGFFKAAA--NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp CSSCBGGGG--HHHHHHCT--TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETT
T ss_pred ccCccHHHH--HHHHhhhh--HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCC
Confidence 777654110 00000000 0111111 1234444444433 122456788888877
Q ss_pred cccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEee
Q 048811 264 NMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILS 313 (318)
Q Consensus 264 ~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~ 313 (318)
+... ...+..+++|+++.+.-+ .....+..+...+++++.|+|+
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~------~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNV------IGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG------GHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCc------cCHHHHHHHHHhCCCCCEEEee
Confidence 6532 122467888888877611 1134566677788888888888
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.02 E-value=6.8e-10 Score=99.61 Aligned_cols=189 Identities=17% Similarity=0.129 Sum_probs=117.8
Q ss_pred eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC-cCCCCCCc
Q 048811 101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD-GVCFPQLK 179 (318)
Q Consensus 101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~ 179 (318)
.+..+.+....-. .+...+.. ..++++|+++..... .+|..+..+++|++|+| .++.+...|. ...+++|+
T Consensus 82 ~l~~L~L~~n~l~---~lp~~l~~--l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L-s~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 82 GRVALELRSVPLP---QFPDQAFR--LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTL-ARNPLRALPASIASLNRLR 153 (328)
T ss_dssp TCCEEEEESSCCS---SCCSCGGG--GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEE-ESCCCCCCCGGGGGCTTCC
T ss_pred ceeEEEccCCCch---hcChhhhh--CCCCCEEECCCCCcc--chhHHHhccCCCCEEEC-CCCccccCcHHHhcCcCCC
Confidence 4777777653321 11111111 347888888776433 67777777888888888 7766655543 34788888
Q ss_pred eeEeeEEEeCcchhhh--------hhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee---
Q 048811 180 ILQIYITHPENRVTEK--------LFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--- 248 (318)
Q Consensus 180 ~L~L~~~~~~~~~l~~--------ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--- 248 (318)
+|+|.++......-.. .+.+++.|++|++.++..... .. .+ -..++|+.|+++++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-------p~------~l-~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-------PA------SI-ANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-------CG------GG-GGCTTCCEEEEESSCCC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-------hH------hh-cCCCCCCEEEccCCCCC
Confidence 8888887654432111 134588888888888876211 00 00 13467888888887
Q ss_pred ----EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 249 ----AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 249 ----~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
..-..|+|++|.++++... ...++++++|+.+.+..+.... .+...+..+++++.|+|+++.+
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~------~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL------TLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC------BCCTTGGGCTTCCEEECTTCTT
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh------hcchhhhcCCCCCEEeCCCCCc
Confidence 1124578888888886543 3356778888888886542111 1123367889999999988653
No 5
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.95 E-value=4.8e-10 Score=72.37 Aligned_cols=39 Identities=28% Similarity=0.488 Sum_probs=33.2
Q ss_pred CCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhc
Q 048811 21 PEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAW 59 (318)
Q Consensus 21 ~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw 59 (318)
..+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999999999753
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.80 E-value=2e-09 Score=96.46 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=103.1
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCCCcC----------CCCCCceeEeeEEEeCcchhhhh
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPPDGV----------CFPQLKILQIYITHPENRVTEKL 196 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~----------~~~~L~~L~L~~~~~~~~~l~~l 196 (318)
.++++|+++..... .+|..+..+++|++|+| .+|... ..|... ++++|++|+|.++.+. .+..-
T Consensus 127 ~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L-~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~ 201 (328)
T 4fcg_A 127 AGLETLTLARNPLR--ALPASIASLNRLRELSI-RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPAS 201 (328)
T ss_dssp TTCSEEEEESCCCC--CCCGGGGGCTTCCEEEE-EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGG
T ss_pred CCCCEEECCCCccc--cCcHHHhcCcCCCEEEC-CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHh
Confidence 47888888776433 66777777788888888 665433 223322 3788888888888776 24444
Q ss_pred hcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc-
Q 048811 197 FCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM- 267 (318)
Q Consensus 197 l~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~- 267 (318)
+..+++|++|++.+|..... . ..+ -..++|+.|++++| .....++|++|.+.++...
T Consensus 202 l~~l~~L~~L~L~~N~l~~l-------~------~~l-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSAL-------G------PAI-HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCC-------C------GGG-GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred hcCCCCCCEEEccCCCCCcC-------c------hhh-ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 67788888888888876211 0 000 03467888888876 1224577888888775432
Q ss_pred --ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811 268 --EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG 315 (318)
Q Consensus 268 --~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~ 315 (318)
...++++++|+.+.|..+.... .+...+..+++++.+.+..+
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~------~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLS------RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCC------CCCGGGGGSCTTCEEECCGG
T ss_pred hcchhhhcCCCCCEEeCCCCCchh------hccHHHhhccCceEEeCCHH
Confidence 2346678888888776543211 12345667777777777654
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.59 E-value=8.4e-09 Score=85.35 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=92.3
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++..... .+| .+..+++|++|++ .++.....+....+++|++|+|.++.+.+... ..+..+|.|+.|+
T Consensus 44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l-~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTI-NNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEE-ESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc--ChH-HHhcCCCCCEEEc-cCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEE
Confidence 47888888775433 444 4666788888888 77766555555578888888888877765332 2356788888888
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecc-cc-ceeecCCCCceEEEEEEE
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNM-LM-EYEVHEMQSIQQATLDLQ 285 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~-~~-~~~~~~~~sL~~l~l~~~ 285 (318)
+.+|...+. .... ....|+|++|.++++. .. ...+..+++|+.+++..+
T Consensus 119 Ls~n~i~~~------------~~~~-----------------l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 119 ISHSAHDDS------------ILTK-----------------INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCSSBCBGG------------GHHH-----------------HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred ecCCccCcH------------hHHH-----------------HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence 888876211 0000 0123555555555553 21 224667888888887655
Q ss_pred eccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 286 HWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
.... + ..+..+++++.|.++++.+
T Consensus 170 ~i~~-------~-~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 170 GVHD-------Y-RGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCCC-------C-TTGGGCSSCCEEEECBC--
T ss_pred CCcC-------h-HHhccCCCCCEEEeeCccc
Confidence 3211 1 1467788888888887753
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.56 E-value=7e-09 Score=90.29 Aligned_cols=62 Identities=21% Similarity=0.136 Sum_probs=28.6
Q ss_pred ccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 150 YSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 150 ~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
..+++|++|+| .++.+...+. ...+++|++|+|.++.+.+. ....+..++.|+.|.+.+|..
T Consensus 82 ~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 82 KELTNLTYLIL-TGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp TTCTTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEEC-CCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCcc
Confidence 34455555555 4444433322 23455555555555544321 222344455555555555543
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.53 E-value=3.5e-08 Score=88.62 Aligned_cols=15 Identities=0% Similarity=0.067 Sum_probs=7.8
Q ss_pred hcCCCceeEEEeecC
Q 048811 301 IEGVATTACLILSGG 315 (318)
Q Consensus 301 l~~l~~v~~L~l~~~ 315 (318)
+..+++++.|+++++
T Consensus 329 ~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 329 LASLSKMDSADFANQ 343 (347)
T ss_dssp GGGCTTCSEESSSCC
T ss_pred hhhhhccceeehhhh
Confidence 444555555555544
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.52 E-value=8.8e-08 Score=83.14 Aligned_cols=60 Identities=23% Similarity=0.117 Sum_probs=26.1
Q ss_pred CCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 152 SMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 152 ~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
+++|++|+| .++.+...+. ...+++|++|+|.++.+... ....+..+++|+.|.+.++..
T Consensus 84 l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 84 LKNLETLWV-TDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp CTTCCEEEC-CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCEEEC-CCCcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcC
Confidence 445555555 4443333221 12445555555554443322 122234455555555555543
No 11
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.52 E-value=7.7e-09 Score=92.49 Aligned_cols=177 Identities=11% Similarity=-0.009 Sum_probs=119.3
Q ss_pred hHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CC-CcCCCCCCceeEeeEEEeCcchhhh
Q 048811 119 PLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PP-DGVCFPQLKILQIYITHPENRVTEK 195 (318)
Q Consensus 119 ~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~-~~~~~~~L~~L~L~~~~~~~~~l~~ 195 (318)
...+......+++.+++..... ...+..++.+++|++|+| .++.+.. .+ ....+++|++|+|.++.+.+... .
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l--~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~ 136 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFM--DQPLAEHFSPFRVQHMDL-SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-N 136 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEE--CSCCCSCCCCBCCCEEEC-TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-H
T ss_pred HHHHHhhhhccceEEEcCCccc--cccchhhccCCCCCEEEc-cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-H
Confidence 4555555567899988765422 223344667899999999 8776543 12 23478999999999998765543 3
Q ss_pred hhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----------EEEeCC-CeeEEEEEec
Q 048811 196 LFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----------AVIMAP-NLQLIRIVDN 264 (318)
Q Consensus 196 ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----------~~i~~P-~L~~L~~~~~ 264 (318)
.+..||+|++|++.+|....+ . ....+.-..++|+.|++++| .....| +|++|.++++
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~---------~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSE---------F--ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCH---------H--HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred HHhcCCCCCEEECCCCCCCCH---------H--HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 456799999999999954211 0 01111114689999999988 123567 9999999998
Q ss_pred cc--c----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811 265 ML--M----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG 315 (318)
Q Consensus 265 ~~--~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~ 315 (318)
.. . ...+.++++|+++.+..+.... . .....+..+++++.|.++++
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~----~-~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK----N-DCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCC----G-GGGGGGGGCTTCCEEECTTC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCC----H-HHHHHHhCCCCCCEeeCCCC
Confidence 42 1 2345679999999886553111 1 12335677899999999876
No 12
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.51 E-value=2.2e-08 Score=82.75 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=73.0
Q ss_pred eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CCCcCCCCCC
Q 048811 101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PPDGVCFPQL 178 (318)
Q Consensus 101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~L 178 (318)
.++.+.+....-.. +.. .....++++|+++.+.. ..+..+..+++|++|+| .++.+.. +.....+++|
T Consensus 45 ~L~~L~l~~n~i~~---l~~---l~~l~~L~~L~l~~n~~---~~~~~l~~l~~L~~L~l-~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 45 SLTYITLANINVTD---LTG---IEYAHNIKDLTINNIHA---TNYNPISGLSNLERLRI-MGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp TCCEEEEESSCCSC---CTT---GGGCTTCSEEEEESCCC---SCCGGGTTCTTCCEEEE-ECTTCBGGGSCCCTTCTTC
T ss_pred CccEEeccCCCccC---hHH---HhcCCCCCEEEccCCCC---CcchhhhcCCCCCEEEe-ECCccCcccChhhcCCCCC
Confidence 48888887533221 111 12235899999998732 22345667899999999 7777654 4445589999
Q ss_pred ceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 179 KILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 179 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
++|+|.++.+.+... ..+..+|.|++|++.+|..
T Consensus 115 ~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~ 148 (197)
T 4ezg_A 115 TLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGA 148 (197)
T ss_dssp CEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTB
T ss_pred CEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCC
Confidence 999999999877543 4467899999999999983
No 13
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.47 E-value=2.4e-08 Score=88.59 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=38.9
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++.+... .++. +..+++|++|+| .++.+...+....+++|++|+|.++.+.+- .. +..+|+|++|.
T Consensus 63 ~~L~~L~L~~n~i~--~~~~-~~~l~~L~~L~L-~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 63 NNLIGLELKDNQIT--DLAP-LKNLTKITELEL-SGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLY 135 (308)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCCSCCEEEC-CSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEE
T ss_pred CCCCEEEccCCcCC--CChh-HccCCCCCEEEc-cCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEE
Confidence 35555555544221 1222 344555666666 555444444444555566665555554432 12 44555566666
Q ss_pred eeeecC
Q 048811 208 LTVLIQ 213 (318)
Q Consensus 208 l~~c~~ 213 (318)
+.++..
T Consensus 136 l~~n~l 141 (308)
T 1h6u_A 136 LDLNQI 141 (308)
T ss_dssp CCSSCC
T ss_pred CCCCcc
Confidence 555544
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.47 E-value=4e-08 Score=85.89 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=79.3
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccce-ecCC-C-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFR-FADP-P-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~-~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
++++|+++...... ..|..+..+++|++|+| .++. +... + ....+++|++|+|.++.+.+. ....+..++.|++
T Consensus 57 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l-~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 57 NLTILWLHSNVLAR-IDAAAFTGLALLEQLDL-SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQY 133 (285)
T ss_dssp TCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC-CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCEEECCCCccce-eCHhhcCCccCCCEEeC-CCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCE
Confidence 55666655432111 11334445566666666 4443 3322 1 223566666666666555432 2333555666666
Q ss_pred eeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--E------EEeCCCeeEEEEEecccc---ceeecCC
Q 048811 206 LSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--A------VIMAPNLQLIRIVDNMLM---EYEVHEM 274 (318)
Q Consensus 206 L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--~------~i~~P~L~~L~~~~~~~~---~~~~~~~ 274 (318)
|.+.++......+ ..+ -..++|+.|+++++ . ....++|++|.+.++... ...+.++
T Consensus 134 L~l~~n~l~~~~~------------~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 134 LYLQDNALQALPD------------DTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp EECCSSCCCCCCT------------TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred EECCCCcccccCH------------hHh-ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 6666665421100 000 02345566665555 1 112456666666665433 2234556
Q ss_pred CCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 275 QSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 275 ~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
++|+.+++..+..... ....+..+++++.|+++++.
T Consensus 201 ~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 201 GRLMTLYLFANNLSAL------PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSCCSCC------CHHHHTTCTTCCEEECCSSC
T ss_pred ccccEeeCCCCcCCcC------CHHHcccCcccCEEeccCCC
Confidence 6666666654422111 12345566666777666553
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.46 E-value=3.8e-08 Score=88.40 Aligned_cols=161 Identities=11% Similarity=0.106 Sum_probs=89.9
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++.+.... +| .+..+++|++|+| .++.+...+....+++|++|++.++..... +.. +..++.|++|.
T Consensus 88 ~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l-~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~-~~~-~~~l~~L~~L~ 161 (347)
T 4fmz_A 88 VKLTNLYIGTNKITD--IS-ALQNLTNLRELYL-NEDNISDISPLANLTKMYSLNLGANHNLSD-LSP-LSNMTGLNYLT 161 (347)
T ss_dssp TTCCEEECCSSCCCC--CG-GGTTCTTCSEEEC-TTSCCCCCGGGTTCTTCCEEECTTCTTCCC-CGG-GTTCTTCCEEE
T ss_pred CcCCEEEccCCcccC--ch-HHcCCCcCCEEEC-cCCcccCchhhccCCceeEEECCCCCCccc-ccc-hhhCCCCcEEE
Confidence 355666555442221 22 2445556666666 555544444444566666666665533222 111 45666666666
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEeccccc-eeecCCCCceEE
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLME-YEVHEMQSIQQA 280 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~~-~~~~~~~sL~~l 280 (318)
+.+|..... ..+ -..++|+.|++++| .....++|++|.+.++.... ..+..+++|+++
T Consensus 162 l~~~~~~~~--------------~~~-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 226 (347)
T 4fmz_A 162 VTESKVKDV--------------TPI-ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSL 226 (347)
T ss_dssp CCSSCCCCC--------------GGG-GGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred ecCCCcCCc--------------hhh-ccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEE
Confidence 666654211 000 13467777877776 12245678888877765442 226678888888
Q ss_pred EEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 281 TLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
.+..+..... .. +..+++++.|+++++.+
T Consensus 227 ~l~~n~l~~~-------~~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 227 KIGNNKITDL-------SP-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp ECCSSCCCCC-------GG-GTTCTTCCEEECCSSCC
T ss_pred EccCCccCCC-------cc-hhcCCCCCEEECCCCcc
Confidence 8765532111 11 77889999999987754
No 16
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.46 E-value=3.3e-08 Score=87.72 Aligned_cols=79 Identities=14% Similarity=0.027 Sum_probs=62.7
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|++..+... .+| .+..+++|++|+| .++.+...+....+++|++|+|.++.+.+- . -+..++.|++|.
T Consensus 41 ~~L~~L~l~~~~i~--~l~-~~~~l~~L~~L~L-~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVT--TIE-GVQYLNNLIGLEL-KDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCC--CCT-TGGGCTTCCEEEC-CSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCcc--Cch-hhhccCCCCEEEc-cCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEE
Confidence 48888888765332 344 4567899999999 888877765567899999999999988764 2 477899999999
Q ss_pred eeeecC
Q 048811 208 LTVLIQ 213 (318)
Q Consensus 208 l~~c~~ 213 (318)
+.+|..
T Consensus 114 l~~n~l 119 (308)
T 1h6u_A 114 LTSTQI 119 (308)
T ss_dssp CTTSCC
T ss_pred CCCCCC
Confidence 999987
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.46 E-value=6.3e-08 Score=90.45 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=44.3
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
.++++|+++...... ..|..+..+++|++|+| .++.+...+. ...+++|++|+|.++.+..- -...+..+|+|+.
T Consensus 99 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLEL-FDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMR 175 (452)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEEC-CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCC-cChhhccCcccCCEEEC-CCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccE
Confidence 356666665542211 11233445667777777 5555444332 23567777777766665432 1234556666666
Q ss_pred eeeeeecC
Q 048811 206 LSLTVLIQ 213 (318)
Q Consensus 206 L~l~~c~~ 213 (318)
|++.+|..
T Consensus 176 L~l~~~~~ 183 (452)
T 3zyi_A 176 LDLGELKK 183 (452)
T ss_dssp EECCCCTT
T ss_pred EeCCCCCC
Confidence 66666543
No 18
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.45 E-value=9.5e-08 Score=91.95 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=71.1
Q ss_pred eEeEEEEEeeCCCCCCChhHHHHHHH--HCCceEEEEEEc-cCccccCCCCCccCCcccEEEecccceecCCC------C
Q 048811 101 SIHTFSLRSVNAIRRDRFPLWVSQAI--MRNVREMEIDII-QYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP------D 171 (318)
Q Consensus 101 ~l~~l~l~~~~~~~~~~~~~wl~~a~--~~~l~~L~l~~~-~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~------~ 171 (318)
.++.+.+.... -.+..+.... .+++++|++..+ ......++.....|++|++|+| .+|.+.... .
T Consensus 106 ~L~~L~L~~~~-----~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L-~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 106 WLEEIRLKRMV-----VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL-RESDVDDVSGHWLSHF 179 (594)
T ss_dssp TCCEEEEESCB-----CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC-TTCEEECCCGGGGGGS
T ss_pred CCCeEEeeCcE-----EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC-cCCccCCcchHHHHHH
Confidence 38899887532 1122233222 368999999876 2222234444557899999999 887754421 1
Q ss_pred cCCCCCCceeEeeEEE--eCcchhhhhhcCCcccceeeeeee
Q 048811 172 GVCFPQLKILQIYITH--PENRVTEKLFCSCPSLTELSLTVL 211 (318)
Q Consensus 172 ~~~~~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~l~~c 211 (318)
...+++|++|+|.++. +....+..++.+||+|++|++.+|
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 2268899999998886 444457888888999999999887
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.44 E-value=2.5e-08 Score=88.68 Aligned_cols=182 Identities=15% Similarity=0.044 Sum_probs=91.2
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
..+++|+++....-...+|..+..+++|++|+| .++.+. ..|. ...+++|++|+|.++.+.+. +...+..+|+|++
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI-THTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG 153 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEE-EEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEEC-cCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence 456666666321122244555556666666666 554443 2222 33566666666666655432 2334455666666
Q ss_pred eeeeeecCCCCCC----------CceeeeccccceE-EEEEEcCccceEEEeee-E-------EEeCCCeeEEEEEeccc
Q 048811 206 LSLTVLIQPDDPP----------ANFIIQSTTLNTL-TFVVLFASLRGMSYHHR-A-------VIMAPNLQLIRIVDNML 266 (318)
Q Consensus 206 L~l~~c~~~~~~~----------~~~~i~s~~~~~~-~l~i~~~~L~~L~i~~~-~-------~i~~P~L~~L~~~~~~~ 266 (318)
|++.++......+ ..+.++.-.+... .-.+...+|+.|+++++ + .-..++|++|.+.++..
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 6666655410000 0000100000000 00001123677777766 1 12356777777777654
Q ss_pred c--ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 267 M--EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 267 ~--~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
. ...+..+++|+++.+..+.... .+...+..+++++.|.|+++.+
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYG------TLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEE------CCCGGGGGCTTCCEEECCSSEE
T ss_pred eeecCcccccCCCCEEECcCCcccC------cCChHHhcCcCCCEEECcCCcc
Confidence 3 2235567788887775443211 1234567888899998887643
No 20
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.43 E-value=1.9e-08 Score=96.92 Aligned_cols=131 Identities=13% Similarity=0.145 Sum_probs=73.2
Q ss_pred CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec---CCCCCCCceeeeccccceEEEEEEcCccceEEEeee--
Q 048811 174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI---QPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR-- 248 (318)
Q Consensus 174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~---~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-- 248 (318)
++++|++|+|.+..+.+..+..+..+||+|++|++.+|. ...+.+.. . ....+.-.+++|+.|+++.|
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~----~---~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD----N---GVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH----H---HHHHHHHHCTTCCEEEEECCGG
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH----H---HHHHHHHhCCCCCEEEEecCCC
Confidence 366666666655555544455555556666666666432 11110000 0 00000012577888887654
Q ss_pred ---------EEEeCCCeeEEEEEecccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecC
Q 048811 249 ---------AVIMAPNLQLIRIVDNMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGG 315 (318)
Q Consensus 249 ---------~~i~~P~L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~ 315 (318)
+.-..|+|++|.+.++... ...+..+++|+++.|.-+.. ....+..+...+++++.|.|+++
T Consensus 449 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-----SERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC-----BHHHHHHHHHHCSSCCEEEEESC
T ss_pred CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC-----cHHHHHHHHHhcCccCeeECcCC
Confidence 1223678888888776543 22345678888887765531 24455666777888888888776
Q ss_pred c
Q 048811 316 V 316 (318)
Q Consensus 316 ~ 316 (318)
.
T Consensus 524 ~ 524 (592)
T 3ogk_B 524 R 524 (592)
T ss_dssp B
T ss_pred c
Confidence 5
No 21
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.40 E-value=3e-08 Score=87.28 Aligned_cols=61 Identities=18% Similarity=0.043 Sum_probs=28.7
Q ss_pred CccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 149 VYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 149 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
+..+++|+.|+| .++.+...+....+++|++|+|.++.+.+- .-+..+|.|+.|.+.+|..
T Consensus 86 l~~l~~L~~L~l-~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 86 LANLKNLGWLFL-DENKVKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKI 146 (291)
T ss_dssp GTTCTTCCEEEC-CSSCCCCGGGGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCC
T ss_pred cccCCCCCEEEC-CCCcCCCChhhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcC
Confidence 334455555555 444444433334455555555555544432 1233455555555555544
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.40 E-value=7.6e-08 Score=89.57 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=44.0
Q ss_pred cCccceEEEeee--EE------EeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCC
Q 048811 237 FASLRGMSYHHR--AV------IMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVA 305 (318)
Q Consensus 237 ~~~L~~L~i~~~--~~------i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 305 (318)
.++|+.|+++++ .. ...++|++|.+.++... ...+.++++|+.++|..+...... ...+..++
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~ 279 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP------HDLFTPLH 279 (440)
T ss_dssp CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC------TTTTSSCT
T ss_pred CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC------hhHhcccc
Confidence 356677777666 11 13466777777666543 224566777777777544322111 23466778
Q ss_pred ceeEEEeecCc
Q 048811 306 TTACLILSGGV 316 (318)
Q Consensus 306 ~v~~L~l~~~~ 316 (318)
+++.|+|+++-
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 88888887764
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.40 E-value=3.5e-08 Score=88.12 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=30.0
Q ss_pred CcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecC
Q 048811 153 MTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~ 213 (318)
++|++|++ .++.+...+. ...+++|++|+|.++.+.... ....+.+++.|++|.+.++..
T Consensus 121 ~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 121 KTLQELRV-HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp TTCCEEEC-CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred ccccEEEC-CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 45555555 4443332221 234566666666655554322 233455566666666666554
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.39 E-value=1.1e-07 Score=85.64 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=27.7
Q ss_pred cCCcccEEEecccceecCCCC---cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 151 SSMTLEVLRLHTAFRFADPPD---GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 151 ~~~~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+++|++|+| .++.+...+. ...+++|++|+|.++..........+.+++.|++|++.++..
T Consensus 122 ~l~~L~~L~L-~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 122 PLSSLTFLNL-LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp TCTTCSEEEC-TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCccCCEEEC-CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 3455555555 4444433322 224555555555554211111122344555555555555543
No 25
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.39 E-value=5.6e-09 Score=95.50 Aligned_cols=175 Identities=10% Similarity=0.069 Sum_probs=105.7
Q ss_pred CCceEEEEEEccCc--cccCCCCC-------ccCCcccEEEecccceecCC-----C-CcCCCCCCceeEeeEEEeCcch
Q 048811 128 RNVREMEIDIIQYA--PMQLPGCV-------YSSMTLEVLRLHTAFRFADP-----P-DGVCFPQLKILQIYITHPENRV 192 (318)
Q Consensus 128 ~~l~~L~l~~~~~~--~~~lp~~~-------~~~~~L~~L~L~~~~~~~~~-----~-~~~~~~~L~~L~L~~~~~~~~~ 192 (318)
++++.|+++.+... ...+|..+ ..+++|++|+| .++.+... + ....+++|++|+|.++.+.+..
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL-SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC-CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC-CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 46787777665211 11223222 46678888888 66665441 1 1236788888888888775443
Q ss_pred ---hhhhhcCC---------cccceeeeeeecCCCCCCCceeeeccccceEEE--EE-EcCccceEEEeee-EE------
Q 048811 193 ---TEKLFCSC---------PSLTELSLTVLIQPDDPPANFIIQSTTLNTLTF--VV-LFASLRGMSYHHR-AV------ 250 (318)
Q Consensus 193 ---l~~ll~~c---------p~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l--~i-~~~~L~~L~i~~~-~~------ 250 (318)
+...+..+ |.|++|.+.+|...+. ....+ .+ ..++|+.|.+++| +.
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 206 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------------SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG------------GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH------------HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH
Confidence 44444445 8888888888876211 11110 01 3468888888887 11
Q ss_pred ------EeCCCeeEEEEEecccc-------ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcC--CCceeEEEeecC
Q 048811 251 ------IMAPNLQLIRIVDNMLM-------EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEG--VATTACLILSGG 315 (318)
Q Consensus 251 ------i~~P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~--l~~v~~L~l~~~ 315 (318)
...|+|++|.++++... ...+..+++|+.+.+..+... ......+...+.. +++++.|.|+++
T Consensus 207 l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS--ARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC--HHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc--hhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 14578999998887652 224567888998887544311 1112334566644 889999999887
Q ss_pred cC
Q 048811 316 VL 317 (318)
Q Consensus 316 ~~ 317 (318)
.+
T Consensus 285 ~i 286 (386)
T 2ca6_A 285 EI 286 (386)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.38 E-value=5.8e-07 Score=72.00 Aligned_cols=84 Identities=23% Similarity=0.204 Sum_probs=52.1
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++.+......+|..+..+++|+.|+| .++.+...+....+++|++|+|.++.+.+. +..++..+|.|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l-~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSL-INVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEE-ESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeC-cCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEe
Confidence 356666666654332355655566677777777 666555444444677777777777766553 445555677777777
Q ss_pred eeeecC
Q 048811 208 LTVLIQ 213 (318)
Q Consensus 208 l~~c~~ 213 (318)
+.+|..
T Consensus 102 Ls~N~l 107 (168)
T 2ell_A 102 LSGNKL 107 (168)
T ss_dssp CBSSSC
T ss_pred ccCCcc
Confidence 777755
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.38 E-value=5.1e-08 Score=90.77 Aligned_cols=60 Identities=28% Similarity=0.263 Sum_probs=28.5
Q ss_pred cCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811 151 SSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI 212 (318)
Q Consensus 151 ~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 212 (318)
.+++|++|+| .++.+...+. ...+++|++|+|.++.+..- -...+..+|+|++|++.+|.
T Consensus 110 ~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 110 GLANLNTLEL-FDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELK 171 (440)
T ss_dssp TCSSCCEEEC-CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCT
T ss_pred CCccCCEEEC-CCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCC
Confidence 3455555655 4444433322 23455555555555544322 12234455555555555543
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.38 E-value=7.7e-08 Score=93.01 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=10.7
Q ss_pred HhcCCCceeEEEeecCc
Q 048811 300 LIEGVATTACLILSGGV 316 (318)
Q Consensus 300 ~l~~l~~v~~L~l~~~~ 316 (318)
.+..+++++.|.++++.
T Consensus 471 ~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCD 487 (606)
T ss_dssp GGGGCTTCCEEECTTSC
T ss_pred hhccCCCccEEECCCCc
Confidence 35566677777666654
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.37 E-value=3.1e-07 Score=82.82 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=91.5
Q ss_pred CceEEEEEEccCccccCCC-CCccCCcccEEEecccceecCC-C-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 129 NVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFRFADP-P-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
++++|+++..... .+|. .+..+++|++|+| .++.+... + ....+++|++|+|.++.+.+- -...+.++++|++
T Consensus 53 ~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 128 (353)
T 2z80_A 53 AVKSLDLSNNRIT--YISNSDLQRCVNLQALVL-TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF 128 (353)
T ss_dssp TCCEEECTTSCCC--EECTTTTTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred cCcEEECCCCcCc--ccCHHHhccCCCCCEEEC-CCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence 5666666554222 2333 4456677777777 66554433 2 234677777777777766542 2334567777777
Q ss_pred eeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee---EEE------eCCCeeEEEEEecccc---ceeecC
Q 048811 206 LSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR---AVI------MAPNLQLIRIVDNMLM---EYEVHE 273 (318)
Q Consensus 206 L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~---~~i------~~P~L~~L~~~~~~~~---~~~~~~ 273 (318)
|++.++....-+ ....--..++|+.|+++++ ..+ ..++|++|.+.++... ...+++
T Consensus 129 L~L~~n~l~~l~------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 129 LNLLGNPYKTLG------------ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp EECTTCCCSSSC------------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred EECCCCCCcccC------------chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 777777552110 0000013456777777665 111 2456777777776543 224556
Q ss_pred CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
+++|+++.+..+.. ...-..++..+++++.|+++++.
T Consensus 197 l~~L~~L~l~~n~l------~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 197 IQNVSHLILHMKQH------ILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CSEEEEEEEECSCS------TTHHHHHHHHTTTEEEEEEESCB
T ss_pred cccCCeecCCCCcc------ccchhhhhhhcccccEEECCCCc
Confidence 67777776654421 11113345556777777777654
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.37 E-value=8.6e-08 Score=85.18 Aligned_cols=202 Identities=10% Similarity=0.094 Sum_probs=120.7
Q ss_pred eEeEEEEEe-eCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCCC-cCCCCC
Q 048811 101 SIHTFSLRS-VNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPPD-GVCFPQ 177 (318)
Q Consensus 101 ~l~~l~l~~-~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~-~~~~~~ 177 (318)
.++.+.+.. ..... .+...+ ....++++|+++..... ..+|..+..+++|++|+| .++.+. ..|. ...+++
T Consensus 77 ~L~~L~L~~~n~l~~--~~p~~l--~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 77 YLNFLYIGGINNLVG--PIPPAI--AKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDF-SYNALSGTLPPSISSLPN 150 (313)
T ss_dssp TCSEEEEEEETTEES--CCCGGG--GGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEEC-CSSEEESCCCGGGGGCTT
T ss_pred CCCeeeCCCCCcccc--cCChhH--hcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeC-CCCccCCcCChHHhcCCC
Confidence 488888873 22111 011111 12358999999886432 256677778899999999 777665 3343 447899
Q ss_pred CceeEeeEEEeCcchhhhhhcCCc-ccceeeeeeecCCCCCCC---ceeeeccccceEEEE------E-EcCccceEEEe
Q 048811 178 LKILQIYITHPENRVTEKLFCSCP-SLTELSLTVLIQPDDPPA---NFIIQSTTLNTLTFV------V-LFASLRGMSYH 246 (318)
Q Consensus 178 L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~l~~c~~~~~~~~---~~~i~s~~~~~~~l~------i-~~~~L~~L~i~ 246 (318)
|++|+|.++.+.+. +..-+..++ .|+.|++.++......+. .+.+..-.+....+. + ..++|+.|+++
T Consensus 151 L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 151 LVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp CCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred CCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 99999988877533 333455666 889999888764211111 111111111111111 1 24789999999
Q ss_pred ee-E------EEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 247 HR-A------VIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 247 ~~-~------~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
++ + ....++|++|.++++... ...+.++++|+.+++..+...... .. ...+++++.|.+.++.
T Consensus 230 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i------p~-~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI------PQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC------CC-STTGGGSCGGGTCSSS
T ss_pred CCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC------CC-CccccccChHHhcCCC
Confidence 87 1 124589999999988654 345778999999999765432110 01 1455666666666553
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.37 E-value=3.7e-07 Score=86.56 Aligned_cols=176 Identities=11% Similarity=0.144 Sum_probs=120.4
Q ss_pred HHHHHHHH-CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CCCcCCCCCCceeEeeEEEeCcch-hhh
Q 048811 120 LWVSQAIM-RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PPDGVCFPQLKILQIYITHPENRV-TEK 195 (318)
Q Consensus 120 ~wl~~a~~-~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~-l~~ 195 (318)
.++..... ..++.|+++........++ ..+++|++|+| .++.+.. +.....+++|++|+|.++.+.+-. +..
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 368 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCP---SKISPFLHLDF-SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEEC-CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred hhhhcccccCceeEEEcCCCccccccch---hhCCcccEEEe-ECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence 45555433 4689999887643332222 46789999999 8887665 234458999999999999987633 566
Q ss_pred hhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEE-----Ee-CCCeeEEEEEecccc--
Q 048811 196 LFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAV-----IM-APNLQLIRIVDNMLM-- 267 (318)
Q Consensus 196 ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~-----i~-~P~L~~L~~~~~~~~-- 267 (318)
.+..++.|+.|++.++...+. + ....+ ...++|+.|+++++-. .. .++|++|.++++...
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~------l-----~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~i 436 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYD------E-----KKGDC-SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI 436 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCC------G-----GGCSC-CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCC
T ss_pred HHhhCCCCCEEECCCCcCCcc------c-----ccchh-ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccccc
Confidence 788999999999999987321 0 00000 1347899999988811 01 278999999888654
Q ss_pred ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 268 EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 268 ~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
...+..+++|+++.+..+....-+ ...+..+++++.|+++++.+
T Consensus 437 p~~~~~l~~L~~L~L~~N~l~~l~------~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASNQLKSVP------DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCB
T ss_pred chhhhcCCCCCEEECCCCcCCccC------HHHhccCCcccEEECcCCCC
Confidence 223458899999888766432211 11577889999999988754
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.37 E-value=1.3e-08 Score=89.86 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC---CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP---DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.++++|+++.... ..+|..+..+++|++|+| .++.+...+ ....+++|++|+|.++.+... ....+.+++.|+
T Consensus 78 ~~L~~L~Ls~n~i--~~l~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 153 (306)
T 2z66_A 78 TSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDF-QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLE 153 (306)
T ss_dssp SCCCEEECCSCSE--EEEEEEEETCTTCCEEEC-TTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCC
T ss_pred cccCEEECCCCcc--ccChhhcCCCCCCCEEEC-CCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCC
Confidence 4677776665422 134444555667777777 555544432 233566777777766654332 234455667777
Q ss_pred eeeeeeecCCCCCCCceeeeccccceEEEEE-EcCccceEEEeee--EE------EeCCCeeEEEEEecccc---ceeec
Q 048811 205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVV-LFASLRGMSYHHR--AV------IMAPNLQLIRIVDNMLM---EYEVH 272 (318)
Q Consensus 205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i-~~~~L~~L~i~~~--~~------i~~P~L~~L~~~~~~~~---~~~~~ 272 (318)
+|.+.++...+. ...-.+ ..++|+.|+++++ .. -..|+|++|.++++... ...+.
T Consensus 154 ~L~l~~n~l~~~-------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 154 VLKMAGNSFQEN-------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp EEECTTCEEGGG-------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred EEECCCCccccc-------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 777766654110 000001 2355666666655 11 12356666666665432 12344
Q ss_pred CCCCceEEEEEEE
Q 048811 273 EMQSIQQATLDLQ 285 (318)
Q Consensus 273 ~~~sL~~l~l~~~ 285 (318)
.+++|+.+.+..+
T Consensus 221 ~l~~L~~L~L~~N 233 (306)
T 2z66_A 221 CLNSLQVLDYSLN 233 (306)
T ss_dssp TCTTCCEEECTTS
T ss_pred CcccCCEeECCCC
Confidence 5666666655433
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.37 E-value=2.1e-07 Score=87.21 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=36.1
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCc
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPEN 190 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 190 (318)
.++++|+++.+... .++. +..+++|++|+| .++.+...+....+++|++|+|.++.+.+
T Consensus 90 ~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L-~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 90 TKLVDILMNNNQIA--DITP-LANLTNLTGLTL-FNNQITDIDPLKNLTNLNRLELSSNTISD 148 (466)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEEC-CSSCCCCCGGGTTCTTCSEEEEEEEEECC
T ss_pred ccCCEEECCCCccc--cChh-hcCCCCCCEEEC-CCCCCCCChHHcCCCCCCEEECCCCccCC
Confidence 46777776654222 2222 556677777777 66665555445567777777777777655
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.37 E-value=1.3e-07 Score=83.43 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=84.4
Q ss_pred CceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCC----CCcCCCCCCceeEeeEEEeCcchhhhhhcCCccc
Q 048811 129 NVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADP----PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSL 203 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 203 (318)
++++|+++..... .+|..+ ..+++|++|+| .++.+... .....+++|++|+|.++.+.. +..-+..++.|
T Consensus 29 ~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 29 SATRLELESNKLQ--SLPHGVFDKLTQLTKLSL-SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TCCEEECCSSCCC--CCCTTTTTTCTTCSEEEC-CSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCEEECCCCccC--ccCHhHhhccccCCEEEC-CCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 5566655544221 344432 34566666666 44433211 112245666666666655432 22224556666
Q ss_pred ceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--E------EEeCCCeeEEEEEecccc----ceee
Q 048811 204 TELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--A------VIMAPNLQLIRIVDNMLM----EYEV 271 (318)
Q Consensus 204 e~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--~------~i~~P~L~~L~~~~~~~~----~~~~ 271 (318)
++|++.++....... ...+ ...++|+.|+++++ . .-..++|++|.+.++... ...+
T Consensus 104 ~~L~l~~n~l~~~~~-----------~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 104 EHLDFQHSNLKQMSE-----------FSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp CEEECTTSEEESSTT-----------TTTT-TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred CEEECCCCccccccc-----------chhh-hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 666666654311100 0000 02356777777665 1 113467777777666432 2345
Q ss_pred cCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 272 HEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 272 ~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
..+++|+.+.+..+.... .....+..+++++.|.++++.+
T Consensus 172 ~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp TTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTSCC
T ss_pred hhCcCCCEEECCCCCcCC------cCHHHhcCCCCCCEEECCCCcc
Confidence 667777777765432111 0123466778888888887654
No 35
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.37 E-value=6.3e-08 Score=83.90 Aligned_cols=136 Identities=16% Similarity=0.135 Sum_probs=63.5
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
..++.|+++.+... .+| .+..+++|+.|+| .++.+...+....+++|++|+|.++.+.+- ..+. . +.|+.|.
T Consensus 41 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L-~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l--~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ--SLA-GMQFFTNLKELHL-SHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGIP-S-ACLSRLF 112 (263)
T ss_dssp TTCSEEECTTSCCC--CCT-TGGGCTTCCEEEC-CSSCCCCCGGGTTCSSCCEEECCSSCCSCC--TTCC-C-SSCCEEE
T ss_pred CcCcEEECcCCCcc--cch-HHhhCCCCCEEEC-CCCccCCChhhccCCCCCEEECCCCccCCc--Cccc-c-CcccEEE
Confidence 35555555544222 223 3344556666666 555544443344566666666666655442 1211 1 5666666
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceEE
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQA 280 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l 280 (318)
+.++...+ ...+ -..++|+.|+++++ ..-..++|++|.++++... ...+..+++|+.+
T Consensus 113 L~~N~l~~--------------~~~l-~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L 177 (263)
T 1xeu_A 113 LDNNELRD--------------TDSL-IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177 (263)
T ss_dssp CCSSCCSB--------------SGGG-TTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEE
T ss_pred ccCCccCC--------------Chhh-cCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEE
Confidence 66665411 0000 02345555555554 1113355555555554432 1234445555555
Q ss_pred EEEEEe
Q 048811 281 TLDLQH 286 (318)
Q Consensus 281 ~l~~~~ 286 (318)
.+..+.
T Consensus 178 ~l~~N~ 183 (263)
T 1xeu_A 178 DLTGQK 183 (263)
T ss_dssp EEEEEE
T ss_pred eCCCCc
Confidence 555443
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.36 E-value=3.2e-07 Score=87.54 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=42.4
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
.+++|+++..... ...|..+..+++|++|+| .++.+...+ ....+++|++|+|.++.+.+. ....+.++++|++|
T Consensus 27 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLDLSFNKIT-YIGHGDLRACANLQVLIL-KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEECCSSCCC-EECSSTTSSCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred CccEEECcCCccC-ccChhhhhcCCcccEEEC-CCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence 5566665554221 112334445566666666 555443322 233566666666666655433 22334566666666
Q ss_pred eeeeecC
Q 048811 207 SLTVLIQ 213 (318)
Q Consensus 207 ~l~~c~~ 213 (318)
++.++..
T Consensus 104 ~Ls~n~l 110 (549)
T 2z81_A 104 NLMGNPY 110 (549)
T ss_dssp ECTTCCC
T ss_pred ECCCCcc
Confidence 6666654
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.36 E-value=3.6e-08 Score=86.17 Aligned_cols=167 Identities=14% Similarity=0.082 Sum_probs=111.8
Q ss_pred CCceEEEEEEccCccccCC-CCCccCCcccEEEecccceecCC-C-CcCCCCCCceeEeeEEE-eCcchhhhhhcCCccc
Q 048811 128 RNVREMEIDIIQYAPMQLP-GCVYSSMTLEVLRLHTAFRFADP-P-DGVCFPQLKILQIYITH-PENRVTEKLFCSCPSL 203 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~-~-~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~L 203 (318)
..+++|+++..... .++ ..+..+++|++|+| .++.+... + ....+++|++|+|.++. +... ....+..+++|
T Consensus 32 ~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNRIS--HVPAASFRACRNLTILWL-HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSCCC--EECTTTTTTCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTC
T ss_pred CCceEEEeeCCcCC--ccCHHHcccCCCCCEEEC-CCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCC
Confidence 47888887665322 233 34567789999999 77655433 2 34578999999999886 4332 24457789999
Q ss_pred ceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeec
Q 048811 204 TELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVH 272 (318)
Q Consensus 204 e~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~ 272 (318)
++|++.++......+ ..+ -..++|+.|+++++ + .-..++|++|.+.++... ...+.
T Consensus 108 ~~L~l~~n~l~~~~~------------~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 108 HTLHLDRCGLQELGP------------GLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp CEEECTTSCCCCCCT------------TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEEECCCCcCCEECH------------hHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 999999987631100 000 13478999999887 1 224688999999988654 22467
Q ss_pred CCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 273 EMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 273 ~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
.+++|+.+.+..+..... ....+..+++++.|+++++.+
T Consensus 175 ~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHV------HPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp TCTTCCEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCC
T ss_pred CccccCEEECCCCccccc------CHhHccCcccccEeeCCCCcC
Confidence 789999998865532111 134467889999999998754
No 38
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.34 E-value=1.7e-07 Score=81.35 Aligned_cols=166 Identities=16% Similarity=0.180 Sum_probs=114.3
Q ss_pred CCceEEEEEEccCccccCCC-CCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.++++|+++..... .+|. .+..+++|++|+| .++.+...+. ...+++|++|+|.++.+..- -...+..++.|+
T Consensus 37 ~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l-~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYL-NDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSSCCS--CCCTTSSSSCTTCCEEEC-CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCC
T ss_pred CCCCEEECcCCCCC--eeCHHHhcCCCCCCEEEC-CCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCC
Confidence 47888888765322 3443 4567789999999 7777665543 24789999999998877643 234567899999
Q ss_pred eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecC
Q 048811 205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHE 273 (318)
Q Consensus 205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~ 273 (318)
+|.+.++......+.. + -..++|+.|+++++ ..-..++|++|.+.++... ...+.+
T Consensus 113 ~L~l~~n~l~~~~~~~------------~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 179 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRV------------F-DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179 (270)
T ss_dssp EEECCSSCCCCCCTTT------------T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred EEECCCCccCeeCHHH------------h-CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence 9999998763210000 0 13478999999887 1224688999999887654 224677
Q ss_pred CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
+++|+.+.+.-+....-+ ...+..+++++.|.|+++-
T Consensus 180 l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 180 LTELKTLKLDNNQLKRVP------EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSC
T ss_pred CCCcCEEECCCCcCCcCC------HHHhccccCCCEEEecCCC
Confidence 899999988655322111 2346788999999998875
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.34 E-value=1.5e-07 Score=90.03 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=31.8
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEE
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITH 187 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~ 187 (318)
.++++|++...... .+|..+..+ +|++|++ .++.+...|. ..+++|++|++.++.
T Consensus 282 ~~L~~L~l~~~~l~--~l~~~~~~~-~L~~L~l-~~n~~~~l~~-~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 282 TNVSSFSLVSVTIE--RVKDFSYNF-GWQHLEL-VNCKFGQFPT-LKLKSLKRLTFTSNK 336 (570)
T ss_dssp TTCSEEEEESCEEC--SCCBCCSCC-CCSEEEE-ESCBCSSCCB-CBCSSCCEEEEESCB
T ss_pred CcccEEEecCccch--hhhhhhccC-CccEEee-ccCcccccCc-ccccccCEEeCcCCc
Confidence 47888888765322 466666666 7777777 6665554333 244555555554444
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.34 E-value=1.2e-07 Score=81.38 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=83.0
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
.++.|+++...... ..+..+..+++|++|+| .++.+...+. ...+++|++|+|.++.+... ....+.+++.|++|
T Consensus 36 ~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 112 (251)
T 3m19_A 36 DTEKLDLQSTGLAT-LSDATFRGLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCEEEccCCCcCc-cCHhHhcCcccCCEEEC-CCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEE
Confidence 56666665542211 11223445677777777 6665544432 34677777777777766532 23445667777777
Q ss_pred eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeecCCC
Q 048811 207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVHEMQ 275 (318)
Q Consensus 207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~~~~ 275 (318)
.+.++....-. ... + -..++|+.|+++++ + .-..++|++|.+.++... ...+.+++
T Consensus 113 ~L~~N~l~~~~-------~~~-----~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 113 YLGGNQLKSLP-------SGV-----F-DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp ECCSSCCCCCC-------TTT-----T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred EcCCCcCCCcC-------hhH-----h-ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 77777652110 000 0 02356666666665 0 112356677776666443 12345566
Q ss_pred CceEEEEEEEeccCCCCChhhHHHHhc
Q 048811 276 SIQQATLDLQHWESDTVDPQRARNLIE 302 (318)
Q Consensus 276 sL~~l~l~~~~~~~~~~~~~~~~~~l~ 302 (318)
+|+.+.+..+.+..+..+...+..++.
T Consensus 180 ~L~~L~l~~N~~~c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 180 KLQTITLFGNQFDCSRCEILYLSQWIR 206 (251)
T ss_dssp TCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred CCCEEEeeCCceeCCccccHHHHHHHH
Confidence 677666665544333233334444443
No 41
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.34 E-value=3.7e-08 Score=95.50 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=69.3
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++.+... .++. +..+++|+.|+| .++.+...+....+++|++|+|.++.+.+- . -+..||.|+.|.
T Consensus 65 ~~L~~L~Ls~N~l~--~~~~-l~~l~~L~~L~L-s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~ 137 (605)
T 1m9s_A 65 PNVTKLFLNGNKLT--DIKP-LTNLKNLGWLFL-DENKIKDLSSLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLY 137 (605)
T ss_dssp TTCCEEECTTSCCC--CCGG-GGGCTTCCEEEC-CSSCCCCCTTSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEE
T ss_pred CCCCEEEeeCCCCC--CChh-hccCCCCCEEEC-cCCCCCCChhhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEE
Confidence 45666666544221 1222 445566666666 666555555555666666666666665542 1 245566666666
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceEE
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQA 280 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l 280 (318)
|.+|.... ...+ -..++|+.|++++| .....|+|+.|.++++... ...+..+++|+.+
T Consensus 138 Ls~N~l~~--------------l~~l-~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L 202 (605)
T 1m9s_A 138 LGNNKITD--------------ITVL-SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 202 (605)
T ss_dssp CCSSCCCC--------------CGGG-GSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEE
T ss_pred CCCCccCC--------------chhh-cccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEE
Confidence 66665521 0000 02355666666555 1113455555555554332 1234455555555
Q ss_pred EEEEE
Q 048811 281 TLDLQ 285 (318)
Q Consensus 281 ~l~~~ 285 (318)
.|..+
T Consensus 203 ~L~~N 207 (605)
T 1m9s_A 203 ELFSQ 207 (605)
T ss_dssp ECCSE
T ss_pred EccCC
Confidence 55544
No 42
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=7.2e-08 Score=77.97 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=46.4
Q ss_pred cCCCCCccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEE-eCcchhhhhhcC---CcccceeeeeeecCC
Q 048811 144 QLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITH-PENRVTEKLFCS---CPSLTELSLTVLIQP 214 (318)
Q Consensus 144 ~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~l~~c~~~ 214 (318)
.+|..-.....|++|+| ++|.+.+. ....+|++|++|+|.+|. ++|.++..+-.. ||.|++|+|++|...
T Consensus 52 ~LP~~~~~~~~L~~LDL-s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDA-TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp GSCCCSTTCCCEEEEEE-ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred cCCcccCCCceEeEEeC-cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 45554334457888888 77764332 112378888888888885 555557776653 778888888888754
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.32 E-value=8.7e-08 Score=89.47 Aligned_cols=165 Identities=14% Similarity=0.078 Sum_probs=105.2
Q ss_pred CCceEEEEEEccCccccCCCC-CccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPGC-VYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.++++|+++.... ..+|.. +..+++|++|+| .++.+...+ ....+++|++|+|.++.....--...+.++++|+
T Consensus 123 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L-~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 123 ASLNTLELFDNWL--TVIPSGAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TTCCEEECCSSCC--SBCCTTTSSSCTTCCEEEC-CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred ccCCEEECCCCcC--CccChhhhcccCCCCEEEC-CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 4789998877632 245544 445789999999 777665443 3447899999999875433322234577899999
Q ss_pred eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecC
Q 048811 205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHE 273 (318)
Q Consensus 205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~ 273 (318)
.|++.++...+. ..+ -..++|+.|+++++ .....++|++|.+.++... ...+.+
T Consensus 200 ~L~L~~n~l~~~--------------~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 200 YLNLGMCNIKDM--------------PNL-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp EEECTTSCCSSC--------------CCC-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred EEECCCCccccc--------------ccc-cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 999999877311 110 13467777777776 1123567788877776543 224566
Q ss_pred CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
+++|+.++|..+....-. ...+..+++++.|+|+++-
T Consensus 265 l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLP------HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSSCCSCCC------TTSSTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcCCccC------hHHhccccCCCEEEccCCC
Confidence 777887777654322111 2345667777888777663
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.32 E-value=8.6e-07 Score=80.93 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=93.3
Q ss_pred CceEEEEEEccCccccCC-CCCccCCcccEEEecccceecCCCCc--CCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 129 NVREMEIDIIQYAPMQLP-GCVYSSMTLEVLRLHTAFRFADPPDG--VCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
++++|+++.... ..++ ..+..+++|++|+| .++.+...|.. ..+++|++|+|.++.+... ....+..++.|++
T Consensus 94 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L-~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 94 TIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN 169 (390)
T ss_dssp TCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCE
T ss_pred CcCEEECCCCCC--CcCCHHHhcCCCCCCEEEC-CCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCE
Confidence 555555554321 1222 23345566666666 55555544432 3566677777666655432 2233556677777
Q ss_pred eeeeeecCCCCCC------CceeeeccccceEEEEEEcCccceEEEeee-----EEEeCCCeeEEEEEecccc-ceeecC
Q 048811 206 LSLTVLIQPDDPP------ANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLM-EYEVHE 273 (318)
Q Consensus 206 L~l~~c~~~~~~~------~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~-~~~~~~ 273 (318)
|.+.++....... ..+.++... ...+. ..++|+.|+++++ .....++|++|.+.++... ...+++
T Consensus 170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~--l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~ 246 (390)
T 3o6n_A 170 LQLSSNRLTHVDLSLIPSLFHANVSYNL--LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN 246 (390)
T ss_dssp EECCSSCCSBCCGGGCTTCSEEECCSSC--CSEEE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGG
T ss_pred EECCCCcCCccccccccccceeeccccc--ccccC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcC
Confidence 7776665421100 001111100 00111 2245667766665 1122357888888776544 335677
Q ss_pred CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
+++|+++.+..+.... .....+..+++++.|.++++.+
T Consensus 247 l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp CTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECCSSCC
T ss_pred CCCccEEECCCCcCCC------cChhHccccccCCEEECCCCcC
Confidence 8888888886543211 1134567788999999987754
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.32 E-value=1.6e-07 Score=88.05 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=41.5
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
.++++|+++..... ...|..+..+++|++|+| .++.+... ....++++|++|+|.++.+.+. ....+..++.|+.
T Consensus 104 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~ 180 (477)
T 2id5_A 104 SNLTKLDISENKIV-ILLDYMFQDLYNLKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIV 180 (477)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEEE-CCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCE
T ss_pred CCCCEEECCCCccc-cCChhHccccccCCEEEC-CCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcE
Confidence 35666666544211 112334445566666666 54433222 1233566666666666655432 1233455566666
Q ss_pred eeeeeecC
Q 048811 206 LSLTVLIQ 213 (318)
Q Consensus 206 L~l~~c~~ 213 (318)
|.+.++..
T Consensus 181 L~l~~n~i 188 (477)
T 2id5_A 181 LRLRHLNI 188 (477)
T ss_dssp EEEESCCC
T ss_pred EeCCCCcC
Confidence 66655543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.31 E-value=1.5e-07 Score=84.05 Aligned_cols=177 Identities=13% Similarity=0.113 Sum_probs=103.5
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++..... ...|..+..+++|++|+| .++.+...|... +++|++|++.++.+... ....+.+++.|+.|+
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L-s~n~l~~l~~~~-~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYL-SKNQLKELPEKM-PKTLQELRVHENEITKV-RKSVFNGLNQMIVVE 151 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC-CSSCCSBCCSSC-CTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEE
T ss_pred CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEEC-CCCcCCccChhh-cccccEEECCCCccccc-CHhHhcCCccccEEE
Confidence 57888888765322 123556667889999999 777666555433 48999999998877654 345578899999999
Q ss_pred eeeecCCCC--CC---------CceeeeccccceEEEE-EEcCccceEEEeee--EE------EeCCCeeEEEEEecccc
Q 048811 208 LTVLIQPDD--PP---------ANFIIQSTTLNTLTFV-VLFASLRGMSYHHR--AV------IMAPNLQLIRIVDNMLM 267 (318)
Q Consensus 208 l~~c~~~~~--~~---------~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~--~~------i~~P~L~~L~~~~~~~~ 267 (318)
+.++..... .+ ..+.++...+. .+. -..++|+.|+++++ .. -..++|++|.++++...
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC--SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCccc--cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 999866210 00 01111111000 000 00146666666665 11 13456777777666543
Q ss_pred ---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 268 ---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 268 ---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
...+..+++|+++.+..+... .+...+..+++++.|+++++.+
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCEEECCSSCC
T ss_pred eeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCEEECCCCcC
Confidence 123556677777666544321 1122356777888888876643
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.30 E-value=2.6e-07 Score=86.61 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=102.4
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++.+... .+|. +..+++|++|+| .++.+...+....+++|++|+|.++.+.+.. . +..++.|++|+
T Consensus 68 ~~L~~L~Ls~n~l~--~~~~-~~~l~~L~~L~l-~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLT--DITP-LKNLTKLVDILM-NNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEEC-CSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEE
T ss_pred cCCCEEECCCCccC--Cchh-hhccccCCEEEC-CCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEE
Confidence 57888887765322 2333 566778888888 7776665544567888888888887765532 2 67788888888
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee-----EEEeCCCeeEEEEEecccc-ceeecCCCCceEEE
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQAT 281 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l~ 281 (318)
+.+|...+. ..+ -..++|+.|.+.+. .....++|++|.++++... ...+..+++|+.+.
T Consensus 141 l~~n~l~~~--------------~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 141 LSSNTISDI--------------SAL-SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 205 (466)
T ss_dssp EEEEEECCC--------------GGG-TTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred CCCCccCCC--------------hhh-ccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEE
Confidence 888876211 000 13466777777544 1224577888888777643 23466788888888
Q ss_pred EEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 282 LDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
+..+..... . -+..+++++.|.++++.+
T Consensus 206 l~~n~l~~~----~----~~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 206 ATNNQISDI----T----PLGILTNLDELSLNGNQL 233 (466)
T ss_dssp CCSSCCCCC----G----GGGGCTTCCEEECCSSCC
T ss_pred ecCCccccc----c----cccccCCCCEEECCCCCc
Confidence 765432111 1 156788899998887653
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.30 E-value=2.2e-07 Score=87.13 Aligned_cols=81 Identities=16% Similarity=0.040 Sum_probs=40.2
Q ss_pred CceEEEEEEccCccccCCCC-CccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 129 NVREMEIDIIQYAPMQLPGC-VYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
++++|+++... ...+|.. +..+++|++|+| .++.+... .....+++|++|+|.++.+.... ...+.++++|++
T Consensus 81 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 156 (477)
T 2id5_A 81 NLRTLGLRSNR--LKLIPLGVFTGLSNLTKLDI-SENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQ 156 (477)
T ss_dssp TCCEEECCSSC--CCSCCTTSSTTCTTCCEEEC-TTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCE
T ss_pred cCCEEECCCCc--CCccCcccccCCCCCCEEEC-CCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCE
Confidence 56666655432 1233332 234566666666 54443322 12235666666666655443321 223455666666
Q ss_pred eeeeeecC
Q 048811 206 LSLTVLIQ 213 (318)
Q Consensus 206 L~l~~c~~ 213 (318)
|.+.+|..
T Consensus 157 L~l~~n~l 164 (477)
T 2id5_A 157 LTLEKCNL 164 (477)
T ss_dssp EEEESCCC
T ss_pred EECCCCcC
Confidence 66666644
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.29 E-value=7.6e-07 Score=84.06 Aligned_cols=157 Identities=14% Similarity=0.059 Sum_probs=100.4
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL 208 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 208 (318)
++++|+++...... ..|..+..+++|++|+| .++.+...+....+++|++|+|+++.+.+- ...|.|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L-s~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNL-SSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCC-CCGGGGTTCTTCCEEEC-TTSCCEEEEECTTCTTCCEEECCSSEEEEE------EECTTCCEEEC
T ss_pred CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEe-eCCCCCCCcccccCCCCCEEEecCCcCCCC------CCCCCcCEEEC
Confidence 68888887763322 12345566788888888 666654333356788888888888876542 23488888888
Q ss_pred eeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEeccccc---eee-cCCCC
Q 048811 209 TVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLME---YEV-HEMQS 276 (318)
Q Consensus 209 ~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~~---~~~-~~~~s 276 (318)
.+|.... .. .-..++|+.|+++++ .....++|++|.++++.... ..+ ..+++
T Consensus 107 ~~N~l~~--------------~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 107 ANNNISR--------------VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp CSSCCCC--------------EE--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred cCCcCCC--------------CC--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 8887721 11 113477888888887 12246788888888876542 223 36788
Q ss_pred ceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 277 IQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 277 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
|+.+++..+..... .-...+++++.|.|+++.+
T Consensus 171 L~~L~Ls~N~l~~~--------~~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 171 LEHLNLQYNFIYDV--------KGQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp CCEEECTTSCCCEE--------ECCCCCTTCCEEECCSSCC
T ss_pred ccEEecCCCccccc--------cccccCCCCCEEECCCCCC
Confidence 88888765432110 1122478888888887754
No 50
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.28 E-value=3.5e-07 Score=91.14 Aligned_cols=144 Identities=14% Similarity=0.096 Sum_probs=83.5
Q ss_pred ccCCcccEEEecccceecCC-CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeecccc
Q 048811 150 YSSMTLEVLRLHTAFRFADP-PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTL 228 (318)
Q Consensus 150 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~ 228 (318)
..+++|++|+| .++.+... |....+++|++|+|.++.+.+. +...+..|++|++|++.+|.....
T Consensus 197 ~~l~~L~~L~L-s~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~------------ 262 (768)
T 3rgz_A 197 SRCVNLEFLDV-SSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGP------------ 262 (768)
T ss_dssp TTCTTCCEEEC-CSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEES------------
T ss_pred ccCCcCCEEEC-cCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCc------------
Confidence 45677888888 66655442 3345678888888888777544 445567788888888888865211
Q ss_pred ceEEEEEEcCccceEEEeeeEEE--------e-CCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhh
Q 048811 229 NTLTFVVLFASLRGMSYHHRAVI--------M-APNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQR 296 (318)
Q Consensus 229 ~~~~l~i~~~~L~~L~i~~~~~i--------~-~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~ 296 (318)
... ...++|+.|++++|... . .++|++|.+.++... ...++++++|+++.+..+..... .
T Consensus 263 -~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----i 334 (768)
T 3rgz_A 263 -IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-----L 334 (768)
T ss_dssp -CCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-----C
T ss_pred -cCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc-----C
Confidence 000 14566777777766111 1 266777777666432 23455667777766654321100 0
Q ss_pred HHHHhcCCCceeEEEeecC
Q 048811 297 ARNLIEGVATTACLILSGG 315 (318)
Q Consensus 297 ~~~~l~~l~~v~~L~l~~~ 315 (318)
-...+..+++++.|.++.+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp CHHHHTTCTTCCEEECCSS
T ss_pred CHHHHhcCCCCCEEeCcCC
Confidence 0233555666666666554
No 51
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.28 E-value=9.9e-08 Score=82.94 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=119.1
Q ss_pred HCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 127 MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 127 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
...+++|.+...... .+ ..+..+++|++|+| .++.+...+....+++|++|+|.++.+.+. ....+..++.|++|
T Consensus 40 l~~L~~L~l~~~~i~--~~-~~l~~l~~L~~L~l-~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK--SV-QGIQYLPNVRYLAL-GGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCC--CC-TTGGGCTTCCEEEC-TTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcc--cc-cccccCCCCcEEEC-CCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEE
Confidence 457888887765322 22 34667899999999 888777766666899999999999887643 34557889999999
Q ss_pred eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeecCCC
Q 048811 207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVHEMQ 275 (318)
Q Consensus 207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~~~~ 275 (318)
.+.+|......+.. + -..++|+.|+++++ + .-..++|++|.+.++... ...++.++
T Consensus 115 ~L~~n~l~~~~~~~------------~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 115 VLVENQLQSLPDGV------------F-DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181 (272)
T ss_dssp ECTTSCCCCCCTTT------------T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ECCCCcCCccCHHH------------h-ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence 99999873110000 0 03478999999988 1 235688999999998654 22367899
Q ss_pred CceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 276 SIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 276 sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
+|+.+.+..+....-. ...+..+++++.|+++++.+
T Consensus 182 ~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVP------DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSCB
T ss_pred cCCEEECCCCcCCccC------HHHHhCCcCCCEEEccCCCc
Confidence 9999988765432111 24577899999999988753
No 52
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.26 E-value=9.5e-08 Score=84.02 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=117.0
Q ss_pred HCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 127 MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 127 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
...+++|+++.+... .++ .+..+++|+.|+| .++.+...+....+++|++|+|.++.+.+ +.. +..++.|+.|
T Consensus 45 l~~L~~L~l~~~~i~--~~~-~~~~l~~L~~L~L-~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFL-NGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCC--CCT-TGGGCTTCCEEEC-CSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred cCcccEEEccCCCcc--cCh-hHhcCCCCCEEEc-cCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEE
Confidence 347888888765332 333 3566899999999 88877766556789999999999998866 333 7889999999
Q ss_pred eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceE
Q 048811 207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQ 279 (318)
Q Consensus 207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~ 279 (318)
++.+|...+- ..+ -..++|+.|+++++ .....++|++|.++++... ...+..+++|+.
T Consensus 118 ~L~~n~i~~~--------------~~l-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~ 182 (291)
T 1h6t_A 118 SLEHNGISDI--------------NGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182 (291)
T ss_dssp ECTTSCCCCC--------------GGG-GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred ECCCCcCCCC--------------hhh-cCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCE
Confidence 9999987311 000 13578999999988 2235689999999988654 223778999999
Q ss_pred EEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 280 ATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 280 l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
+.+.-+.... + .-+..+++++.|.++++.
T Consensus 183 L~L~~N~i~~-------l-~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 183 LYLSKNHISD-------L-RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSSCCCB-------C-GGGTTCTTCSEEEEEEEE
T ss_pred EECCCCcCCC-------C-hhhccCCCCCEEECcCCc
Confidence 9886553211 1 227889999999998864
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.26 E-value=7.7e-07 Score=79.04 Aligned_cols=171 Identities=13% Similarity=0.061 Sum_probs=111.7
Q ss_pred CCCChhHHHHHHHH--CCceEEEEEEccCccccCC-CCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCc
Q 048811 114 RRDRFPLWVSQAIM--RNVREMEIDIIQYAPMQLP-GCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPEN 190 (318)
Q Consensus 114 ~~~~~~~wl~~a~~--~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 190 (318)
....+...+..... .++++|+++..... .++ ..+..+++|++|+| .++.+...+....+++|++|+|.++.+.+
T Consensus 18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 18 TDSSLKQALASLRQSAWNVKELDLSGNPLS--QISAADLAPFTKLELLNL-SSNVLYETLDLESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp CTTTHHHHHHHHHTTGGGCSEEECTTSCCC--CCCHHHHTTCTTCCEEEC-TTSCCEEEEEETTCTTCCEEECCSSEEEE
T ss_pred cccchhhhHHHHhccCCCCCEEECcCCccC--cCCHHHhhCCCcCCEEEC-CCCcCCcchhhhhcCCCCEEECcCCcccc
Confidence 44556666655543 47888888765322 233 34556789999999 77765444335688999999998887654
Q ss_pred chhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEE
Q 048811 191 RVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIV 262 (318)
Q Consensus 191 ~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~ 262 (318)
- ..+|.|+.|.+.++... .. ..-..++|+.|.++++ .....++|++|.++
T Consensus 95 l------~~~~~L~~L~l~~n~l~---------------~~-~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 95 L------LVGPSIETLHAANNNIS---------------RV-SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp E------EECTTCCEEECCSSCCS---------------EE-EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred c------cCCCCcCEEECCCCccC---------------Cc-CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 2 24589999999988772 11 1113578999998887 12235889999998
Q ss_pred eccccce---e-ecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 263 DNMLMEY---E-VHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 263 ~~~~~~~---~-~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
++..... . ...+++|+++++..+..... .-...+++++.|.|+++.+
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--------KGQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--------ECCCCCTTCCEEECCSSCC
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccc--------ccccccccCCEEECCCCcC
Confidence 8765421 2 24678999988865432110 1122478899999988754
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.25 E-value=1.4e-07 Score=91.25 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=27.5
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEE
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYIT 186 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~ 186 (318)
.++++|++..... ..+| .+..+++|++|++ .++.+...|.. .+++|++|++.++
T Consensus 285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l-~~n~l~~lp~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSI-IRCQLKQFPTL-DLPFLKSLTLTMN 338 (606)
T ss_dssp TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEE-ESCCCSSCCCC-CCSSCCEEEEESC
T ss_pred CCCCEEEecCccc--hhhh-hccccccCCEEEc-ccccCcccccC-CCCccceeeccCC
Confidence 4666666665432 2233 3444556666666 55554444432 4555555555444
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.25 E-value=4.1e-08 Score=91.56 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=44.4
Q ss_pred CCceEEEEEEccCccc---cCCCCCccCCcccEEEecccceecCC-C--CcCCCC----CCceeEeeEEEeCcch---hh
Q 048811 128 RNVREMEIDIIQYAPM---QLPGCVYSSMTLEVLRLHTAFRFADP-P--DGVCFP----QLKILQIYITHPENRV---TE 194 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~---~lp~~~~~~~~L~~L~L~~~~~~~~~-~--~~~~~~----~L~~L~L~~~~~~~~~---l~ 194 (318)
+++++|+++.+..... .++..+..+++|++|+| .++.+.+. + ....++ +|++|+|.++.+.+.+ +.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL-RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC-TTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC-CCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 5667776666532211 23344445566666666 55443221 0 001233 5666666666665543 44
Q ss_pred hhhcCCcccceeeeeeecC
Q 048811 195 KLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 195 ~ll~~cp~Le~L~l~~c~~ 213 (318)
..+..||.|++|++.++..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHTTSCTTCCEEECCSSBC
T ss_pred HHHccCCceeEEECCCCcC
Confidence 4555666666666666654
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.25 E-value=2.3e-06 Score=81.86 Aligned_cols=62 Identities=13% Similarity=0.041 Sum_probs=32.3
Q ss_pred CCCCCccCCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeec
Q 048811 145 LPGCVYSSMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLI 212 (318)
Q Consensus 145 lp~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 212 (318)
.|..+..+++|+.|++ .++.+...|... .+ +|++|++.++.+..- .. ..+|.|++|.+.++.
T Consensus 274 ~~~~~~~l~~L~~L~l-~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l--~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSL-VSVTIERVKDFSYNF-GWQHLELVNCKFGQF--PT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp STTTTGGGTTCSEEEE-ESCEECSCCBCCSCC-CCSEEEEESCBCSSC--CB--CBCSSCCEEEEESCB
T ss_pred chhhhcCcCcccEEEe-cCccchhhhhhhccC-CccEEeeccCccccc--Cc--ccccccCEEeCcCCc
Confidence 4444555666777777 665555444322 34 677777766665421 11 234444554444443
No 57
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.24 E-value=5.6e-07 Score=78.56 Aligned_cols=37 Identities=27% Similarity=0.553 Sum_probs=34.5
Q ss_pred CccCCCCChHHHHHHhhcCChhhHh-hhhhcchhhHhh
Q 048811 22 EDRISALPDSVLSNILTFLPLEDAV-ATSSLSQRWRHA 58 (318)
Q Consensus 22 ~d~is~LPd~vL~~Ils~L~~~d~~-~ts~vskrWr~l 58 (318)
...+..||||+|.+||++||.++++ +++.|||+|+.+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 3578899999999999999999999 999999999975
No 58
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.24 E-value=8e-08 Score=92.87 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=33.3
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceec-CCC--CcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccc
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFA-DPP--DGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLT 204 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~--~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le 204 (318)
++++|+++...... ..|..+..+++|+.|+| .++.+. ..+ ....+++|++|+|.++.+.+.. ....+..+|.|+
T Consensus 302 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l-~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 302 TLKKLVLSANKFEN-LCQISASNFPSLTHLSI-KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp TCCEEECTTCCCSB-GGGGCGGGCTTCSEEEC-CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred cCCEEECccCCcCc-CchhhhhccCcCCEEEC-CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 55666555432111 11223334455555555 444322 111 1224455555555544443322 122334445555
Q ss_pred eeeeeee
Q 048811 205 ELSLTVL 211 (318)
Q Consensus 205 ~L~l~~c 211 (318)
+|++.+|
T Consensus 380 ~L~l~~n 386 (606)
T 3t6q_A 380 SLNLSYN 386 (606)
T ss_dssp EEECCSC
T ss_pred EEECCCC
Confidence 5554444
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.23 E-value=5.6e-07 Score=84.28 Aligned_cols=75 Identities=17% Similarity=0.065 Sum_probs=41.1
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
..+++|+++...... ++ +..+++|++|+| .++.+...+ ...+++|++|+|.++.+.+-. +..++.|++|.
T Consensus 85 ~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L-~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~ 154 (457)
T 3bz5_A 85 TNLTYLACDSNKLTN--LD--VTPLTKLTYLNC-DTNKLTKLD-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELD 154 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCCEEEC-CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEE
T ss_pred CCCCEEECcCCCCce--ee--cCCCCcCCEEEC-CCCcCCeec-CCCCCcCCEEECCCCccceec----cccCCcCCEEE
Confidence 356666665543222 22 345566666666 555544433 345666666666666555421 44566666666
Q ss_pred eeeec
Q 048811 208 LTVLI 212 (318)
Q Consensus 208 l~~c~ 212 (318)
+.+|.
T Consensus 155 l~~n~ 159 (457)
T 3bz5_A 155 CHLNK 159 (457)
T ss_dssp CTTCS
T ss_pred CCCCC
Confidence 66663
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.23 E-value=6e-07 Score=84.08 Aligned_cols=170 Identities=9% Similarity=0.028 Sum_probs=94.3
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++...... +| +..+++|++|+| .++.+...+ ...+++|++|+|.++.+.+- . +..++.|++|.
T Consensus 64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~L-s~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITT--LD--LSQNTNLTYLAC-DSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCSEEEC-CSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCe--Ec--cccCCCCCEEEC-cCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEE
Confidence 578888887764333 23 556788899999 777766654 45788899999988877653 2 67888999999
Q ss_pred eeeecCCCCCCC------ceeeeccccceEEEEE-EcCccceEEEeee-----EEEeCCCeeEEEEEeccccceeecCCC
Q 048811 208 LTVLIQPDDPPA------NFIIQSTTLNTLTFVV-LFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLMEYEVHEMQ 275 (318)
Q Consensus 208 l~~c~~~~~~~~------~~~i~s~~~~~~~l~i-~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~~~~~~~~~ 275 (318)
+.++........ .+.++.-.. ...+.+ ..++|+.|+++++ -....++|+.|.+.++......++.++
T Consensus 134 l~~N~l~~l~l~~l~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~ 212 (457)
T 3bz5_A 134 CARNTLTEIDVSHNTQLTELDCHLNKK-ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNI 212 (457)
T ss_dssp CTTSCCSCCCCTTCTTCCEEECTTCSC-CCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCT
T ss_pred CCCCccceeccccCCcCCEEECCCCCc-ccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCC
Confidence 988876311000 000000000 000001 1234555555544 111334555555555544333455566
Q ss_pred CceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 276 SIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 276 sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
+|+.+.+..+.... +. +..+++++.|.++++.+
T Consensus 213 ~L~~L~Ls~N~l~~-------ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-------ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp TCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCC
T ss_pred CCCEEECcCCcccc-------cC--ccccCCCCEEEeeCCcC
Confidence 66665554332111 11 55667777777776543
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.22 E-value=1.9e-06 Score=83.10 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=48.6
Q ss_pred CccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 149 VYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 149 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
+..+++|+.|++ .++.+...+....+++|++|++.++.+.. +..+ .+|.|++|.+.++..
T Consensus 281 ~~~l~~L~~L~l-~~~~~~~l~~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 281 FHCLANVSAMSL-AGVSIKYLEDVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKG 340 (606)
T ss_dssp CGGGTTCSEEEE-ESCCCCCCCCCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSS
T ss_pred cccCCCCCEEEe-cCccchhhhhccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcC
Confidence 556689999999 88877777766688999999999999832 4544 899999999999854
No 62
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.22 E-value=3.8e-07 Score=90.91 Aligned_cols=163 Identities=12% Similarity=0.127 Sum_probs=82.2
Q ss_pred CceEEEEEEccCccccCCC--CCccCCcccEEEecccceecCC-CCc--CCCCCCceeEeeEEEeCcchhh--hhhcCCc
Q 048811 129 NVREMEIDIIQYAPMQLPG--CVYSSMTLEVLRLHTAFRFADP-PDG--VCFPQLKILQIYITHPENRVTE--KLFCSCP 201 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~-~~~--~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp 201 (318)
++++|+++.+... ..+|. .+..+++|++|+| .++.+... |.. ..+++|++|+|.++.+.+.... ..+.+|+
T Consensus 101 ~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 101 SLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNV-SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEEC-CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCEEECCCCcCC-CcCCChHHHhCCCCCCEEEC-cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 5555555544211 12333 4555666666666 55544322 211 3566666666666655443311 2255666
Q ss_pred ccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee-------EEEeCCCeeEEEEEecccc---ceee
Q 048811 202 SLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR-------AVIMAPNLQLIRIVDNMLM---EYEV 271 (318)
Q Consensus 202 ~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-------~~i~~P~L~~L~~~~~~~~---~~~~ 271 (318)
.|++|++.+|..... ... -..++|+.|+++++ ..-..++|++|.+.++... ...+
T Consensus 179 ~L~~L~Ls~n~l~~~--------------~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 179 ELKHLAISGNKISGD--------------VDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp TCCEEECCSSEEESC--------------CBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred CCCEEECCCCccccc--------------CCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH
Confidence 666666666654211 000 13456677776666 1123466777777666543 2345
Q ss_pred cCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 272 HEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 272 ~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
+++++|+.+.+..+...... .. ..+++++.|.++.+.
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~--~~------~~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPI--PP------LPLKSLQYLSLAENK 280 (768)
T ss_dssp TTCSSCCEEECCSSCCEESC--CC------CCCTTCCEEECCSSE
T ss_pred hcCCCCCEEECCCCcccCcc--Cc------cccCCCCEEECcCCc
Confidence 56677777666544221100 00 156677777776553
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.22 E-value=1.7e-06 Score=78.88 Aligned_cols=174 Identities=14% Similarity=0.087 Sum_probs=114.3
Q ss_pred CCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.++++|+++.... ..+|..+ ..+++|++|+| .++.+...+ ....+++|++|+|.++.+.... +..+|.|+
T Consensus 117 ~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~ 189 (390)
T 3o6n_A 117 PLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLF 189 (390)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCS
T ss_pred CCCCEEECCCCcc--CcCCHHHhcCCCCCcEEEC-CCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccc
Confidence 4788888887633 3566665 46789999999 777665443 2457899999999998877643 34567777
Q ss_pred eeeeeeecCCC----CCCCceeeeccccceEEEE-EEcCccceEEEeee------EEEeCCCeeEEEEEecccc---cee
Q 048811 205 ELSLTVLIQPD----DPPANFIIQSTTLNTLTFV-VLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM---EYE 270 (318)
Q Consensus 205 ~L~l~~c~~~~----~~~~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~---~~~ 270 (318)
.|.+.++.... .....+.++...+. .+. -..++|+.|+++++ .....|+|++|.++++... ...
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNSIN--VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSCCC--EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred eeecccccccccCCCCcceEEECCCCeee--eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhH
Confidence 77777665421 00112222221111 111 12368999999988 2335689999999998754 235
Q ss_pred ecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 271 VHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 271 ~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
+.++++|+.+.+..+.... +......+++++.|.|+.+.+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-------~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-------EECSSSCCTTCCEEECCSSCC
T ss_pred ccccccCCEEECCCCcCcc-------cCcccCCCCCCCEEECCCCcc
Confidence 7789999999986553211 122346789999999998754
No 64
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.20 E-value=5.8e-07 Score=83.63 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=36.9
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
++++|+++..... ...|..+..+++|++|+| .++.+.. ++. ...+++|++|+|.++.+.+..-..++.+++.|+
T Consensus 80 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 80 SLIILKLDYNQFL-QLETGAFNGLANLEVLTL-TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp TCCEEECTTCTTC-EECTTTTTTCTTCCEEEC-TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cCCEEeCCCCccC-ccChhhccCcccCCEEeC-CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 4555555443211 112333444555555555 4444432 111 234555555555555544332222344555555
Q ss_pred eeeeeeec
Q 048811 205 ELSLTVLI 212 (318)
Q Consensus 205 ~L~l~~c~ 212 (318)
+|++.++.
T Consensus 158 ~L~L~~n~ 165 (455)
T 3v47_A 158 VLDLTFNK 165 (455)
T ss_dssp EEECTTCC
T ss_pred EEeCCCCc
Confidence 55555554
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.19 E-value=1.9e-06 Score=83.34 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=97.4
Q ss_pred CCceEEEEEEccCccccCCC-CCccCCcccEEEecccceecCCCCc--CCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFRFADPPDG--VCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.+++.|+++.+.. ..+|. .+..+++|++|+| .++.+...|.. ..+++|++|+|.++.+... ....+.++++|+
T Consensus 99 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L-~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 174 (597)
T 3oja_B 99 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQ 174 (597)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCC
T ss_pred CCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEe-eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCc
Confidence 3566666655421 12333 3345667777777 66655554432 3667777777777665432 233456677777
Q ss_pred eeeeeeecCCCCCC------CceeeeccccceEEEEEEcCccceEEEeee-----EEEeCCCeeEEEEEecccc-ceeec
Q 048811 205 ELSLTVLIQPDDPP------ANFIIQSTTLNTLTFVVLFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLM-EYEVH 272 (318)
Q Consensus 205 ~L~l~~c~~~~~~~------~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~-~~~~~ 272 (318)
.|.+.++....... ..+.++... ...+. ..++|+.|+++++ .....++|++|.+.++... ...++
T Consensus 175 ~L~L~~N~l~~~~~~~l~~L~~L~l~~n~--l~~l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~ 251 (597)
T 3oja_B 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNL--LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL 251 (597)
T ss_dssp EEECTTSCCSBCCGGGCTTCSEEECCSSC--CSEEE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG
T ss_pred EEECcCCCCCCcChhhhhhhhhhhcccCc--ccccc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc
Confidence 77777665421100 001111100 01111 2345677776666 1122356888888777544 34567
Q ss_pred CCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 273 EMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 273 ~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
.+++|+.+.+..+.... .....+..+++++.|.|+++.+
T Consensus 252 ~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp GCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECTTSCC
T ss_pred cCCCCCEEECCCCccCC------CCHHHhcCccCCCEEECCCCCC
Confidence 88899998886543211 1134567889999999988754
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.18 E-value=1.4e-07 Score=84.36 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=23.0
Q ss_pred cCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeee
Q 048811 151 SSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVL 211 (318)
Q Consensus 151 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 211 (318)
.+++|++|+| .++.+...|.... ++|++|+|.++.+..- ....+.+++.|+.|.+.++
T Consensus 100 ~l~~L~~L~L-~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 100 PLRKLQKLYI-SKNHLVEIPPNLP-SSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp TCTTCCEEEC-CSSCCCSCCSSCC-TTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSC
T ss_pred CcCCCCEEEC-CCCcCCccCcccc-ccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCC
Confidence 3444555555 4443333322211 4444444444443321 1122334444444444444
No 67
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=3.8e-08 Score=79.59 Aligned_cols=42 Identities=5% Similarity=-0.094 Sum_probs=36.2
Q ss_pred CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCC
Q 048811 174 CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDD 216 (318)
Q Consensus 174 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~ 216 (318)
.-..|++|+|++|.+++.++..+ .+||.|++|+|.+|...+|
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCH
T ss_pred CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCH
Confidence 44579999999999988888876 7999999999999986544
No 68
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.16 E-value=8.1e-07 Score=69.61 Aligned_cols=83 Identities=23% Similarity=0.210 Sum_probs=39.5
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL 208 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 208 (318)
++++|+++.+......+|..+..+++|+.|+| .++.+...+....+++|++|+|.++.+.+. +...+..+|.|+.|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLST-INVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEEC-TTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEEC-cCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 34555544432221234444444555555555 444444333333455555555555554432 3344444555555555
Q ss_pred eeecC
Q 048811 209 TVLIQ 213 (318)
Q Consensus 209 ~~c~~ 213 (318)
.++..
T Consensus 96 s~N~i 100 (149)
T 2je0_A 96 SGNKI 100 (149)
T ss_dssp TTSCC
T ss_pred CCCcC
Confidence 55544
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.16 E-value=2.1e-06 Score=81.37 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=80.1
Q ss_pred cCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCce
Q 048811 144 QLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANF 221 (318)
Q Consensus 144 ~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~ 221 (318)
.+|..+. ++|++|+| .++.+...+ ....+++|++|+|.++.+.+. ....+.+++.|++|++.++...
T Consensus 14 ~ip~~~~--~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~------- 82 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNI-SQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV------- 82 (520)
T ss_dssp SCCCSCC--TTCSEEEC-CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-------
T ss_pred ccccccc--ccccEEEC-CCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-------
Confidence 4565544 78888888 777665543 234788888888888776543 2345677888888888888662
Q ss_pred eeeccccceEEEEEEcCccceEEEeeeE----E-----EeCCCeeEEEEEeccccceeecCCCCc--eEEEEEEEe
Q 048811 222 IIQSTTLNTLTFVVLFASLRGMSYHHRA----V-----IMAPNLQLIRIVDNMLMEYEVHEMQSI--QQATLDLQH 286 (318)
Q Consensus 222 ~i~s~~~~~~~l~i~~~~L~~L~i~~~~----~-----i~~P~L~~L~~~~~~~~~~~~~~~~sL--~~l~l~~~~ 286 (318)
..... ..++|++|+++++. . -..++|++|.++++......+..+++| +++.+..+.
T Consensus 83 -------~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 83 -------KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp -------EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECT
T ss_pred -------ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccc
Confidence 11111 45778888887771 1 135678888888876654555667777 777776553
No 70
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.15 E-value=1.7e-07 Score=90.73 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=117.5
Q ss_pred HCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 127 MRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 127 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
...+++|.++.+... .+| .+..+++|+.|+| .++.+...+....+++|+.|+|.++.+.+- . -+..++.|+.|
T Consensus 42 L~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L-s~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFL-NGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCC--CCT-TGGGCTTCCEEEC-TTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCC--CCh-HHccCCCCCEEEe-eCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEE
Confidence 357888877655322 233 4667899999999 888877766567899999999999988763 2 46789999999
Q ss_pred eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc-ceeecCCCCceE
Q 048811 207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM-EYEVHEMQSIQQ 279 (318)
Q Consensus 207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~-~~~~~~~~sL~~ 279 (318)
+|.+|...+- ..+ -..++|+.|++++| .....++|+.|.++++... ...+..+++|+.
T Consensus 115 ~Ls~N~l~~l--------------~~l-~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~ 179 (605)
T 1m9s_A 115 SLEHNGISDI--------------NGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179 (605)
T ss_dssp ECTTSCCCCC--------------GGG-GGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred EecCCCCCCC--------------ccc-cCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCE
Confidence 9999987311 000 14588999999988 2235689999999988654 223778999999
Q ss_pred EEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 280 ATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 280 l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
+.|..+.... + .-+..+++++.|.|+++.
T Consensus 180 L~Ls~N~i~~-------l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 180 LYLSKNHISD-------L-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSCCCB-------C-GGGTTCTTCSEEECCSEE
T ss_pred EECcCCCCCC-------C-hHHccCCCCCEEEccCCc
Confidence 9887653211 1 237889999999998764
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.15 E-value=1.4e-06 Score=83.49 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=115.7
Q ss_pred HHHHHHHH-CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC--CCcCCCCCCceeEeeEEEeCcch-hhh
Q 048811 120 LWVSQAIM-RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP--PDGVCFPQLKILQIYITHPENRV-TEK 195 (318)
Q Consensus 120 ~wl~~a~~-~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~-l~~ 195 (318)
.|+..... .++++|+++........++ ..+++|++|+| .++.+... .....+++|++|+|.++.+.+-. +..
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIHMVCP---PSPSSFTFLNF-TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEEC-CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred hhhhhhhccCcceEEEccCCCcccccCc---cCCCCceEEEC-CCCccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence 45544433 4688888887643322221 45789999999 77776652 33458999999999999887643 556
Q ss_pred hhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEE-----EeC-CCeeEEEEEecccc--
Q 048811 196 LFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAV-----IMA-PNLQLIRIVDNMLM-- 267 (318)
Q Consensus 196 ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~-----i~~-P~L~~L~~~~~~~~-- 267 (318)
.+.+++.|+.|++.++...... ... .-...++|+.|+++++-. ... ++|++|.++++...
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~-----------~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~i 465 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHA-----------YDR-TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI 465 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCC-----------SSC-CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCC
T ss_pred hhcCCCCCCEEECCCCcCCCcc-----------Chh-hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCccc
Confidence 6889999999999999873210 000 001347888888888711 011 68999998887654
Q ss_pred ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 268 EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 268 ~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
...+.++++|+.+++.-+....-+ . ..+..+++++.|+++++-+
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~~l~--~----~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLKSVP--D----GVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCCCCC--T----TSTTTCTTCCCEECCSCCB
T ss_pred ChhhcCCCCCCEEECCCCCCCCCC--H----HHHhcCCCCCEEEecCCCc
Confidence 223447888888888655432111 1 1467788888888887643
No 72
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.14 E-value=3.8e-07 Score=84.87 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=62.3
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCC-C-CcCCCCCCceeEeeEEEeCcch-hhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADP-P-DGVCFPQLKILQIYITHPENRV-TEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le 204 (318)
.+++.|+++.......--+..+..+++|++|+| .++.+... | ....+++|++|+|.++.+.+.. -...+..+++|+
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL-DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC-TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeC-CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 478888887763322222445667899999999 77765433 3 3457999999999999887643 234578899999
Q ss_pred eeeeeeecCC
Q 048811 205 ELSLTVLIQP 214 (318)
Q Consensus 205 ~L~l~~c~~~ 214 (318)
+|++.++...
T Consensus 133 ~L~L~~n~l~ 142 (455)
T 3v47_A 133 MLVLRDNNIK 142 (455)
T ss_dssp EEECCSSBCC
T ss_pred EEECCCCccC
Confidence 9999999764
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.13 E-value=4.3e-07 Score=85.74 Aligned_cols=181 Identities=9% Similarity=-0.008 Sum_probs=116.8
Q ss_pred eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCce
Q 048811 101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKI 180 (318)
Q Consensus 101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~ 180 (318)
.++.|.+....-.. ....++ ....+++.|+++.+.... .+. +..+++|++|+| .++.+...+ ..++|++
T Consensus 35 ~L~~L~Ls~n~l~~--~~~~~~--~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~L-s~N~l~~l~---~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQ--ISAADL--APFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDL-NNNYVQELL---VGPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCC--CCGGGG--TTCTTCCEEECTTSCCEE--EEE-CTTCTTCCEEEC-CSSEEEEEE---ECTTCCE
T ss_pred CccEEEeeCCcCCC--CCHHHH--hCCCCCCEEEeeCCCCCC--Ccc-cccCCCCCEEEe-cCCcCCCCC---CCCCcCE
Confidence 48888877533211 111111 112578888887663221 222 567789999999 777765543 3489999
Q ss_pred eEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEE-EcCccceEEEeee----EE---E-
Q 048811 181 LQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVV-LFASLRGMSYHHR----AV---I- 251 (318)
Q Consensus 181 L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i-~~~~L~~L~i~~~----~~---i- 251 (318)
|+|.++.+.+.. ...+|.|+.|.+.++..... ....+ ..++|+.|+++++ .. +
T Consensus 104 L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~--------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 104 LHAANNNISRVS----CSRGQGKKNIYLANNKITML--------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp EECCSSCCCCEE----ECCCSSCEEEECCSSCCCSG--------------GGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred EECcCCcCCCCC----ccccCCCCEEECCCCCCCCC--------------CchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 999998876643 23578999999999976311 00011 3578888888887 11 1
Q ss_pred -eCCCeeEEEEEecccc-ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 252 -MAPNLQLIRIVDNMLM-EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 252 -~~P~L~~L~~~~~~~~-~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
..++|++|+++++... ......+++|+.+++..+.... +..-+..+++++.|+|+++.+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-------MGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-------ECGGGGGGTTCSEEECTTSCC
T ss_pred hhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCC-------CCHhHcCCCCccEEEecCCcC
Confidence 4689999999888754 2234468899998886553221 111266789999999988754
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.13 E-value=4.4e-07 Score=80.41 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=28.0
Q ss_pred CCeeEEEEEeccccce--eecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 254 PNLQLIRIVDNMLMEY--EVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 254 P~L~~L~~~~~~~~~~--~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
++|++|.++++..... .+. ++|+.+++..+..... .. +..+++++.|.++++.+
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-------p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-------PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-------CC-TTTSCEEEEEECTTCTT
T ss_pred CCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-------hh-HhhCCCCCEEeccCCCC
Confidence 5666666665544311 111 4566666544321111 11 56677788887777643
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.12 E-value=6.1e-07 Score=76.89 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=72.5
Q ss_pred CcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811 153 MTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT 230 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~ 230 (318)
++|+.|+| .++.+...+ ....+++|++|+|.++.+.+. ....+..++.|+.|++.++......+..
T Consensus 35 ~~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------- 102 (251)
T 3m19_A 35 ADTEKLDL-QSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGV---------- 102 (251)
T ss_dssp TTCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTT----------
T ss_pred CCCCEEEc-cCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhH----------
Confidence 46666666 555544432 223566666666666655432 2334556666666666666542110000
Q ss_pred EEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHH
Q 048811 231 LTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARN 299 (318)
Q Consensus 231 ~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~ 299 (318)
+ -..++|+.|+++++ ..-..++|++|.++++... ...++.+++|+.+++..+....-. ..
T Consensus 103 --~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~ 173 (251)
T 3m19_A 103 --F-DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP------HG 173 (251)
T ss_dssp --T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TT
T ss_pred --h-cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC------HH
Confidence 0 02355666666665 0123456666666665433 113455666666666544321111 12
Q ss_pred HhcCCCceeEEEeecCc
Q 048811 300 LIEGVATTACLILSGGV 316 (318)
Q Consensus 300 ~l~~l~~v~~L~l~~~~ 316 (318)
.+..+++++.|.|+++.
T Consensus 174 ~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HHhCCCCCCEEEeeCCc
Confidence 34556666666666554
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.12 E-value=1.3e-05 Score=76.71 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=35.0
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC---CcCCCCCCceeEeeEEEeCcchhhhhhcCCccc--
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP---DGVCFPQLKILQIYITHPENRVTEKLFCSCPSL-- 203 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L-- 203 (318)
.+++|+++..... .+|.. .+++|++|+| .++.+...+ ....+++|++|+|.+..+....+ ..++.|
T Consensus 101 ~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L-s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L 171 (562)
T 3a79_B 101 DLEYLDVSHNRLQ--NISCC--PMASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHL 171 (562)
T ss_dssp TCCEEECTTSCCC--EECSC--CCTTCSEEEC-CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCE
T ss_pred CCCEEECCCCcCC--ccCcc--ccccCCEEEC-CCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhcee
Confidence 4555555443221 33433 4555666666 554443322 22355666666666655544322 222333
Q ss_pred ceeeeeeec
Q 048811 204 TELSLTVLI 212 (318)
Q Consensus 204 e~L~l~~c~ 212 (318)
+.|.+.++.
T Consensus 172 ~~L~L~~n~ 180 (562)
T 3a79_B 172 SCILLDLVS 180 (562)
T ss_dssp EEEEEEESS
T ss_pred eEEEeeccc
Confidence 555555553
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.12 E-value=4.2e-08 Score=89.65 Aligned_cols=178 Identities=17% Similarity=0.168 Sum_probs=119.4
Q ss_pred CCceEEEEEEccCcc---ccCCCCCccCCcccEEEecccceecCCC-----C-cCCC---------CCCceeEeeEEEeC
Q 048811 128 RNVREMEIDIIQYAP---MQLPGCVYSSMTLEVLRLHTAFRFADPP-----D-GVCF---------PQLKILQIYITHPE 189 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~~~-----~-~~~~---------~~L~~L~L~~~~~~ 189 (318)
.++++|+++.+.... ..+|..+..+++|++|+| .++.+.... . ...+ ++|++|+|.++.+.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L-~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL-HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEEC-CSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEEC-cCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 589999998764322 135556677899999999 877653211 0 0122 89999999999998
Q ss_pred cchhh---hhhcCCcccceeeeeeecCCCCCCCceeeeccccceE-EEEEEcCccceEEEeeeE------------EEeC
Q 048811 190 NRVTE---KLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTL-TFVVLFASLRGMSYHHRA------------VIMA 253 (318)
Q Consensus 190 ~~~l~---~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~-~l~i~~~~L~~L~i~~~~------------~i~~ 253 (318)
+..+. ..+..++.|++|.+.+|...+.+...+ .. .+ -..++|+.|++++|. ....
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l--------~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL--------LLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH--------HHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH--------HHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 66644 567799999999999997621100000 00 00 145789999999881 2356
Q ss_pred CCeeEEEEEeccccc-------eee--cCCCCceEEEEEEEeccCCCCChhhHHHHh-cCCCceeEEEeecCcC
Q 048811 254 PNLQLIRIVDNMLME-------YEV--HEMQSIQQATLDLQHWESDTVDPQRARNLI-EGVATTACLILSGGVL 317 (318)
Q Consensus 254 P~L~~L~~~~~~~~~-------~~~--~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l-~~l~~v~~L~l~~~~~ 317 (318)
|+|++|.++++.... ..+ +.+++|+.+++..+..... ....+...+ ..+++++.|.++++.+
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~--g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD--AVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH--HHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH--HHHHHHHHHHhcCCCceEEEccCCcC
Confidence 899999999887541 122 3489999998865532111 022355555 6689999999998754
No 78
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.12 E-value=6.9e-07 Score=77.29 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=32.2
Q ss_pred cCCCCChHHHHHHhhcCChhhHhhhhhcchhhHh
Q 048811 24 RISALPDSVLSNILTFLPLEDAVATSSLSQRWRH 57 (318)
Q Consensus 24 ~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~ 57 (318)
.|+.||+||+++|||||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999995
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.11 E-value=4.4e-07 Score=82.16 Aligned_cols=177 Identities=12% Similarity=0.112 Sum_probs=95.2
Q ss_pred CCceEEEEEEccCccc---cCCCCCccC-CcccEEEecccceecCCCCc------CC-CCCCceeEeeEEEeCcch---h
Q 048811 128 RNVREMEIDIIQYAPM---QLPGCVYSS-MTLEVLRLHTAFRFADPPDG------VC-FPQLKILQIYITHPENRV---T 193 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~---~lp~~~~~~-~~L~~L~L~~~~~~~~~~~~------~~-~~~L~~L~L~~~~~~~~~---l 193 (318)
.++++|+++.+..... .+...+..+ ++|++|+| .++.+...+.. .. .++|++|+|.++.+.+.. +
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L-s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL-GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC-CSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEEC-cCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 4677777776532211 111112223 57788888 66665443211 12 357888888877776654 3
Q ss_pred hhhhcCCc-ccceeeeeeecCCCCCCCceeeeccccceEEEE--E-Ec-CccceEEEeeeE-----------EE--eCCC
Q 048811 194 EKLFCSCP-SLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV--V-LF-ASLRGMSYHHRA-----------VI--MAPN 255 (318)
Q Consensus 194 ~~ll~~cp-~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~--i-~~-~~L~~L~i~~~~-----------~i--~~P~ 255 (318)
...+..+| .|++|++.+|...+. ....+. + .. ++|+.|+++++- .+ ..++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASK------------NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGS------------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred HHHHhcCCccccEeeecCCCCchh------------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence 44445555 788888887765211 000000 0 12 477777777761 01 1357
Q ss_pred eeEEEEEeccccc-------eeecCCCCceEEEEEEEeccCCC-CChhhHHHHhcCCCceeEEEeecCcC
Q 048811 256 LQLIRIVDNMLME-------YEVHEMQSIQQATLDLQHWESDT-VDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 256 L~~L~~~~~~~~~-------~~~~~~~sL~~l~l~~~~~~~~~-~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
|++|+++++.... ..+..+++|+.+.+..+....-. .....+...+..+++++.|+++++.+
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 8888887775432 12356778888877655321111 00223344455666777777776643
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.10 E-value=9.5e-07 Score=77.54 Aligned_cols=161 Identities=15% Similarity=0.077 Sum_probs=103.3
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
.++++++... .-..+|..+. ++++.|+| .++.+...+ ....+++|++|+|.++.+..-. . ...+|.|+.|
T Consensus 11 ~l~~l~~~~~--~l~~ip~~~~--~~l~~L~L-~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L 82 (290)
T 1p9a_G 11 SHLEVNCDKR--NLTALPPDLP--KDTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTL 82 (290)
T ss_dssp TCCEEECTTS--CCSSCCSCCC--TTCCEEEC-TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEE
T ss_pred CccEEECCCC--CCCcCCCCCC--CCCCEEEc-CCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEE
Confidence 3455554432 2334555443 68889999 766654432 3447889999999888776532 1 2678899999
Q ss_pred eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCC
Q 048811 207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQ 275 (318)
Q Consensus 207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~ 275 (318)
++.++....- ...--..++|+.|.++++ ..-..++|++|.+.++... ...+..++
T Consensus 83 ~Ls~N~l~~l--------------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 83 DLSHNQLQSL--------------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp ECCSSCCSSC--------------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ECCCCcCCcC--------------chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence 9988876211 100013467888888887 1124578999998887654 22356788
Q ss_pred CceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 276 SIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 276 sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
+|+.+.+..+....-+ ...+..+++++.|.|+++.+
T Consensus 149 ~L~~L~L~~N~l~~l~------~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 149 KLEKLSLANNNLTELP------AGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp TCCEEECTTSCCSCCC------TTTTTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccC------HHHhcCcCCCCEEECCCCcC
Confidence 8999888655322111 24567889999999988754
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.10 E-value=2.7e-06 Score=75.28 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=110.8
Q ss_pred HCCceEEEEEEccCccccCCCCC--ccCCcccEEEecccceecCCCCcC-CC-----CCCceeEeeEEEeCcchhhhhhc
Q 048811 127 MRNVREMEIDIIQYAPMQLPGCV--YSSMTLEVLRLHTAFRFADPPDGV-CF-----PQLKILQIYITHPENRVTEKLFC 198 (318)
Q Consensus 127 ~~~l~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~~~~~~-~~-----~~L~~L~L~~~~~~~~~l~~ll~ 198 (318)
..++++|+++..... ..+|..+ ...++|++|+| .++.+...|... .+ ++|++|+|.++.+.+. ....+.
T Consensus 94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNL-RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEE-ESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCC
T ss_pred cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEc-cCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhc
Confidence 368999999987432 2455544 56789999999 777766554322 23 8999999999987653 234567
Q ss_pred CCcccceeeeeeecCCCCCCCceeeeccccceEEEE-EEcCccceEEEeee-EE----------EeCCCeeEEEEEeccc
Q 048811 199 SCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV-VLFASLRGMSYHHR-AV----------IMAPNLQLIRIVDNML 266 (318)
Q Consensus 199 ~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~-i~~~~L~~L~i~~~-~~----------i~~P~L~~L~~~~~~~ 266 (318)
.+++|++|++.++..... ..+ ...+. -..++|+.|+++++ +. ...++|++|+++++..
T Consensus 171 ~l~~L~~L~Ls~N~l~~~----~~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGE----RGL------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCSSCCEEECCSCTTCHH----HHH------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred cCCCCCEEECCCCCcCcc----hHH------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 899999999999975210 000 00000 13478999999887 11 1348999999988865
Q ss_pred cc----eeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 267 ME----YEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 267 ~~----~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
.. ..+..+++|+.+++.-+....- ...+. ++++.|+|+++.+
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-------p~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLKQV-------PKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCSSC-------CSSCC--SEEEEEECCSSCC
T ss_pred CcccchhhhhhcCCCCEEECCCCccChh-------hhhcc--CCceEEECCCCCC
Confidence 42 3445678999988865532211 11111 7899999988764
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.09 E-value=2.6e-07 Score=82.52 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=112.6
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcch-hhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRV-TEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le 204 (318)
.++++|+++.... ..+|..++ ++|++|+| .++.+...+. ...+++|++|+|.++.+.+.. ....+..+ .|+
T Consensus 102 ~~L~~L~L~~n~l--~~l~~~~~--~~L~~L~l-~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 102 RKLQKLYISKNHL--VEIPPNLP--SSLVELRI-HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TTCCEEECCSSCC--CSCCSSCC--TTCCEEEC-CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred CCCCEEECCCCcC--CccCcccc--ccCCEEEC-CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 5788888876533 25666554 79999999 8777666544 357999999999999886533 33444555 899
Q ss_pred eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecC
Q 048811 205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHE 273 (318)
Q Consensus 205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~ 273 (318)
.|++.++....- . . . ..++|+.|+++++ .....++|++|.+.++... ...+..
T Consensus 176 ~L~l~~n~l~~l-------~-----~-~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 176 YLRISEAKLTGI-------P-----K-D---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp CCBCCSSBCSSC-------C-----S-S---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred EEECcCCCCCcc-------C-----c-c---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 999999876311 0 0 0 1268899988887 1224678999999887654 224778
Q ss_pred CCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 274 MQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 274 ~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
+++|+++.+.-+... .+...+..+++++.|+++++.+
T Consensus 240 l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-------RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CTTCCEEECCSSCCC-------BCCTTGGGCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCe-------ecChhhhcCccCCEEECCCCCC
Confidence 999999988755322 1223367899999999998754
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.09 E-value=3.2e-06 Score=81.71 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=115.0
Q ss_pred CCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.+++.|+++.+.. ..+|..+ ..+++|+.|+| .++.+...+ ....+++|++|+|.++.+.... +..+|.|+
T Consensus 123 ~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~ 195 (597)
T 3oja_B 123 PLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSM-SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLF 195 (597)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCS
T ss_pred CCCCEEEeeCCCC--CCCCHHHhccCCCCCEEEe-eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhh
Confidence 4788898887633 2566654 56789999999 777665543 3457899999999988876643 44567788
Q ss_pred eeeeeeecCCC----CCCCceeeeccccceEEEEE-EcCccceEEEeee------EEEeCCCeeEEEEEecccc---cee
Q 048811 205 ELSLTVLIQPD----DPPANFIIQSTTLNTLTFVV-LFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM---EYE 270 (318)
Q Consensus 205 ~L~l~~c~~~~----~~~~~~~i~s~~~~~~~l~i-~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~---~~~ 270 (318)
.|.+.++.... .....+.++...+ ..+.. ..++|+.|.++++ .....|+|++|.++++... ...
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l--~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCC--CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred hhhcccCccccccCCchhheeeccCCcc--cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHH
Confidence 88777765421 0011122222111 11111 2368999999988 2345789999999998754 235
Q ss_pred ecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 271 VHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 271 ~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
++++++|+.+.+..+... .+......+++++.|+|+++.+
T Consensus 274 ~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLV-------ALNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp GTTCSSCCEEECTTSCCC-------EEECSSSCCTTCCEEECCSSCC
T ss_pred hcCccCCCEEECCCCCCC-------CCCcccccCCCCcEEECCCCCC
Confidence 778999999998654321 1123346789999999998764
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.09 E-value=5.3e-07 Score=78.28 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=41.6
Q ss_pred CCceEEEEEEccCccccCCC-CCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.++++|+++..... .++. .+..+++|++|+| .++.+...+ ....+++|++|+|.++.+.... ...+..++.|+
T Consensus 52 ~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 127 (276)
T 2z62_A 52 PELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLK 127 (276)
T ss_dssp TTCSEEECTTCCCC--EECTTTTTTCTTCCEEEC-TTCCCCEECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCC
T ss_pred cCCcEEECCCCcCC--ccCHHHccCCcCCCEEEC-CCCccCccChhhhcCCccccEEECCCCCccccC-chhcccCCCCC
Confidence 35666665544211 2222 3344566666666 555433322 2335666666666665544321 11255666677
Q ss_pred eeeeeeecC
Q 048811 205 ELSLTVLIQ 213 (318)
Q Consensus 205 ~L~l~~c~~ 213 (318)
+|++.++..
T Consensus 128 ~L~l~~n~l 136 (276)
T 2z62_A 128 ELNVAHNLI 136 (276)
T ss_dssp EEECCSSCC
T ss_pred EEECcCCcc
Confidence 776666654
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.08 E-value=2.9e-06 Score=80.77 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=38.7
Q ss_pred CceEEEEEEccCccccCCCC-CccCCcccEEEecccceecCC---CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 129 NVREMEIDIIQYAPMQLPGC-VYSSMTLEVLRLHTAFRFADP---PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
++++|+++.... ..++.. +..+++|++|+| .++.+... +....+++|++|+|.++.+.+.--...+.++++|+
T Consensus 75 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 75 SLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNL-MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp TCCEEECTTSCC--CSCCHHHHTTCTTCCEEEC-TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred cCCEEECCCCcc--CccCHHHhccCCCCcEEEC-CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 455555544321 122222 344556666666 55544321 22335566666666655422221122345566666
Q ss_pred eeeeeeecC
Q 048811 205 ELSLTVLIQ 213 (318)
Q Consensus 205 ~L~l~~c~~ 213 (318)
+|.+.++..
T Consensus 152 ~L~L~~n~l 160 (549)
T 2z81_A 152 ELEIKALSL 160 (549)
T ss_dssp EEEEEETTC
T ss_pred eeeccCCcc
Confidence 666666554
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.07 E-value=2.9e-07 Score=81.80 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=17.2
Q ss_pred CCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 175 FPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 175 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
+++|++|+|.++.+.+.....+...++.|++|++.++..
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 444444444444443332333333444555555544443
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.05 E-value=8.5e-06 Score=82.02 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=49.6
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC--CCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCccc
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD--PPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSL 203 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 203 (318)
.+++.|+++.+... ...|..+..+++|++|+| .++.+.. ++. ...+++|++|+|.++.+.+......+..+++|
T Consensus 73 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 73 PNLRILDLGSSKIY-FLHPDAFQGLFHLFELRL-YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp TTCCEEECTTCCCC-EECTTSSCSCSSCCCEEC-TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCEEECCCCcCc-ccCHhHccCCcccCEeeC-cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 35666666554221 123555566677777777 6665543 111 34677777777777766554334456677777
Q ss_pred ceeeeeeecC
Q 048811 204 TELSLTVLIQ 213 (318)
Q Consensus 204 e~L~l~~c~~ 213 (318)
++|++.++..
T Consensus 151 ~~L~Ls~N~i 160 (844)
T 3j0a_A 151 KSIDFSSNQI 160 (844)
T ss_dssp CEEEEESSCC
T ss_pred CEEECCCCcC
Confidence 7777776654
No 88
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.05 E-value=1.2e-06 Score=85.39 Aligned_cols=78 Identities=10% Similarity=0.000 Sum_probs=42.3
Q ss_pred ccceEEEeee-------EE--EeCCCeeEEEEEecccc--ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCce
Q 048811 239 SLRGMSYHHR-------AV--IMAPNLQLIRIVDNMLM--EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATT 307 (318)
Q Consensus 239 ~L~~L~i~~~-------~~--i~~P~L~~L~~~~~~~~--~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v 307 (318)
+|+.|+++++ .. ...|+|++|.++++... ...+.++++|+.+.+.-+....+..-...+...+..++++
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 6777777776 11 15677788887776543 2345567777777774321000000001112334566777
Q ss_pred eEEEeecCc
Q 048811 308 ACLILSGGV 316 (318)
Q Consensus 308 ~~L~l~~~~ 316 (318)
+.|+|+++.
T Consensus 569 ~~L~Ls~N~ 577 (636)
T 4eco_A 569 TQLQIGSND 577 (636)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 777776654
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.02 E-value=7.1e-07 Score=78.39 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=114.0
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.+++.|+++...... ..|..+...++|++|+| .++.+...+....+++|++|+|.+..+.. +...+.++|.|+.|.
T Consensus 31 ~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNL-DRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEEC-TTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEEC-CCCccCcccCCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence 478888887653221 12344566789999999 77776655555789999999999998763 455678899999999
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCC
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQS 276 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~s 276 (318)
+.++....-.+.. + -..++|+.|.++++ ..-..++|+.|.+.++... ...+..+++
T Consensus 107 l~~N~l~~l~~~~------------~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 107 VSFNRLTSLPLGA------------L-RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp CCSSCCCCCCSST------------T-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred CCCCcCcccCHHH------------H-cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 9999773110000 0 03478999999887 1124578999999888654 224567899
Q ss_pred ceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 277 IQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 277 L~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
|+.+.+..+....- ..-+....+++.|.|+++-
T Consensus 174 L~~L~L~~N~l~~i-------p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 174 LDTLLLQENSLYTI-------PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECCSSCCCCC-------CTTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCcCCcc-------ChhhcccccCCeEEeCCCC
Confidence 99998875542211 1223445689999998764
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.01 E-value=2.8e-06 Score=83.18 Aligned_cols=58 Identities=9% Similarity=-0.037 Sum_probs=26.0
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecC-CC--CcCCCCCCceeEeeEEEe
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD-PP--DGVCFPQLKILQIYITHP 188 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~--~~~~~~~L~~L~L~~~~~ 188 (318)
.++.|+++.+... ...|..+..+++|+.|+| .++.+.. .+ ...++++|++|+|.++.+
T Consensus 382 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L-~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 382 PLHILNLTKNKIS-KIESDAFSWLGHLEVLDL-GLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CCCEEECTTSCCC-EECTTTTTTCTTCCEEEC-CSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred cCceEECCCCCCC-eEChhhhhCCCCCCEEeC-CCCcCccccCcccccCcccccEEecCCCCc
Confidence 5666665443211 112233344556666666 4443321 11 223455555555555543
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.01 E-value=5.8e-07 Score=79.53 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=40.6
Q ss_pred CccceEEEeee----E----EEe---CCCeeEEEEEeccccceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCc
Q 048811 238 ASLRGMSYHHR----A----VIM---APNLQLIRIVDNMLMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVAT 306 (318)
Q Consensus 238 ~~L~~L~i~~~----~----~i~---~P~L~~L~~~~~~~~~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~ 306 (318)
++|+.|+++++ . ... .|+|++|.++++......-.-.++|+.+++..+....- ..+..+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~--------~~~~~l~~ 295 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA--------PQPDELPE 295 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC--------CCTTSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC--------chhhhCCC
Confidence 56777777766 1 011 15777777777654421111135777777755432111 11467788
Q ss_pred eeEEEeecCcC
Q 048811 307 TACLILSGGVL 317 (318)
Q Consensus 307 v~~L~l~~~~~ 317 (318)
++.|+|+++.+
T Consensus 296 L~~L~L~~N~l 306 (310)
T 4glp_A 296 VDNLTLDGNPF 306 (310)
T ss_dssp CSCEECSSTTT
T ss_pred ccEEECcCCCC
Confidence 88888887754
No 92
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.01 E-value=7.4e-06 Score=82.43 Aligned_cols=61 Identities=10% Similarity=-0.050 Sum_probs=33.3
Q ss_pred CCceEEEEEEccCccccCCC--CCccCCcccEEEecccceecCCC---CcCCCCCCceeEeeEEEeCc
Q 048811 128 RNVREMEIDIIQYAPMQLPG--CVYSSMTLEVLRLHTAFRFADPP---DGVCFPQLKILQIYITHPEN 190 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~ 190 (318)
.++++|+++.+.... ..|. .+..+++|++|+| .++.+...+ ....+++|++|+|.++.+..
T Consensus 97 ~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~~L~L-s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 97 FHLFELRLYFCGLSD-AVLKDGYFRNLKALTRLDL-SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SSCCCEECTTCCCSS-CCSTTCCCSSCSSCCEEEE-ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cccCEeeCcCCCCCc-ccccCccccccCCCCEEEC-CCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 356666666542221 1222 2445677777777 555544332 13467777777777766543
No 93
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.01 E-value=4.2e-08 Score=91.53 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=44.5
Q ss_pred CceEEEEEEccCcc---ccCCCCCccCCcccEEEecccceecCC-CC------cCCCCCCceeEeeEEEeCcch---hhh
Q 048811 129 NVREMEIDIIQYAP---MQLPGCVYSSMTLEVLRLHTAFRFADP-PD------GVCFPQLKILQIYITHPENRV---TEK 195 (318)
Q Consensus 129 ~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~~-~~------~~~~~~L~~L~L~~~~~~~~~---l~~ 195 (318)
++++|+++.+.... ..++..+..+++|++|+| .++.+... +. ....++|++|+|.++.+.+.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L-s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL-SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEEC-CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEEC-CCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 46666665553221 133444555667777777 55543221 00 112445666666666665544 344
Q ss_pred hhcCCcccceeeeeeecC
Q 048811 196 LFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 196 ll~~cp~Le~L~l~~c~~ 213 (318)
.+..||.|++|++.++..
T Consensus 165 ~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHCTTCCEEECCSSBC
T ss_pred HHhhCCCCCEEECcCCCc
Confidence 455566666666666654
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.97 E-value=6.5e-06 Score=69.74 Aligned_cols=164 Identities=9% Similarity=0.029 Sum_probs=96.9
Q ss_pred CCceEEEEEEccCccccCCC-CCccCCcccEEEecccce-ecCCC--CcCCCCCCceeEeeE-EEeCcchhhhhhcCCcc
Q 048811 128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTAFR-FADPP--DGVCFPQLKILQIYI-THPENRVTEKLFCSCPS 202 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~-~~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~ 202 (318)
..+++|+++.... ..+|. .+..+++|++|+| .++. +...+ ...++++|++|+|.+ ..+..- -...+.++++
T Consensus 31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l-~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYV-SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEE-ECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTT
T ss_pred CcccEEEEeCCcc--eEECHHHccCCCCCcEEeC-CCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCC
Confidence 3788888877632 23444 4456788999999 6664 43333 334788999999987 444432 2345678899
Q ss_pred cceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccc---eEEEeee---E------EEeCCCee-EEEEEeccccc-
Q 048811 203 LTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLR---GMSYHHR---A------VIMAPNLQ-LIRIVDNMLME- 268 (318)
Q Consensus 203 Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~---~L~i~~~---~------~i~~P~L~-~L~~~~~~~~~- 268 (318)
|++|.+.++....- ..+ -..++|+ .|+++++ . .-..++|+ +|.+.++....
T Consensus 107 L~~L~l~~n~l~~l--------------p~~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 107 LKFLGIFNTGLKMF--------------PDL-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp CCEEEEEEECCCSC--------------CCC-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred CCEEeCCCCCCccc--------------ccc-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 99999988876211 100 0223444 6777665 1 12356777 88887765431
Q ss_pred --eeecCCCCceEEEEEEEe-ccCCCCChhhHHHHhcCC-CceeEEEeecCcC
Q 048811 269 --YEVHEMQSIQQATLDLQH-WESDTVDPQRARNLIEGV-ATTACLILSGGVL 317 (318)
Q Consensus 269 --~~~~~~~sL~~l~l~~~~-~~~~~~~~~~~~~~l~~l-~~v~~L~l~~~~~ 317 (318)
..+.. ++|+++.+.-+. ... .-...+..+ ++++.|+++.+.+
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~~------i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLTV------IDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCCE------ECTTTTTTCSBCCSEEECTTCCC
T ss_pred CHhhcCC-CCCCEEEcCCCCCccc------CCHHHhhccccCCcEEECCCCcc
Confidence 12222 567777664331 110 002345667 8899999887654
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.95 E-value=2.2e-06 Score=75.80 Aligned_cols=144 Identities=15% Similarity=0.086 Sum_probs=97.1
Q ss_pred HCCceEEEEEEccCccccCC-CCCccCCcccEEEecccceecC------CCCcCCCCCCceeEeeEEEeCcch--hhhhh
Q 048811 127 MRNVREMEIDIIQYAPMQLP-GCVYSSMTLEVLRLHTAFRFAD------PPDGVCFPQLKILQIYITHPENRV--TEKLF 197 (318)
Q Consensus 127 ~~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~--l~~ll 197 (318)
..++++|+++.+.. ..++ ..+..+++|++|+| .++.+.. ......+++|++|+|.++.+..-. ...++
T Consensus 144 ~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 144 KPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDL-SDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp CSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEEC-CSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred ccCCCEEEeeCCCc--chhhHHHhccCCCCCEEEC-CCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 35889999887643 2333 44556789999999 6665321 122247899999999999886422 33456
Q ss_pred cCCcccceeeeeeecCCCCCCCceeeeccccceEEEE--EEcCccceEEEeee-----EEEeCCCeeEEEEEeccccc-e
Q 048811 198 CSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV--VLFASLRGMSYHHR-----AVIMAPNLQLIRIVDNMLME-Y 269 (318)
Q Consensus 198 ~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~--i~~~~L~~L~i~~~-----~~i~~P~L~~L~~~~~~~~~-~ 269 (318)
..++.|++|++.++...+.. ...+. ...++|+.|+++++ ...-.++|++|+++++.... .
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~------------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATV------------NPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCC------------CSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCC
T ss_pred hcCCCCCEEECCCCCCCccc------------hhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCc
Confidence 78899999999998773210 00011 01278999999987 11113789999999987653 3
Q ss_pred eecCCCCceEEEEEEE
Q 048811 270 EVHEMQSIQQATLDLQ 285 (318)
Q Consensus 270 ~~~~~~sL~~l~l~~~ 285 (318)
.+..+++|+.+.+..+
T Consensus 289 ~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 289 QPDELPEVDNLTLDGN 304 (310)
T ss_dssp CTTSCCCCSCEECSST
T ss_pred hhhhCCCccEEECcCC
Confidence 4678899999888544
No 96
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=1.9e-06 Score=86.68 Aligned_cols=78 Identities=9% Similarity=0.001 Sum_probs=40.6
Q ss_pred ccceEEEeee-------EE--EeCCCeeEEEEEecccc--ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCce
Q 048811 239 SLRGMSYHHR-------AV--IMAPNLQLIRIVDNMLM--EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATT 307 (318)
Q Consensus 239 ~L~~L~i~~~-------~~--i~~P~L~~L~~~~~~~~--~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v 307 (318)
+|+.|++++| .. ...|+|+.|.++++... ...+.++++|+.+.|.-+....+..-...+...+..++++
T Consensus 729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 6777777766 11 14567777777776543 2345567777777764422000000001112334556667
Q ss_pred eEEEeecCc
Q 048811 308 ACLILSGGV 316 (318)
Q Consensus 308 ~~L~l~~~~ 316 (318)
+.|.|+++.
T Consensus 809 ~~L~Ls~N~ 817 (876)
T 4ecn_A 809 IQLQIGSND 817 (876)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCC
Confidence 777666654
No 97
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.92 E-value=2.1e-05 Score=76.29 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=70.2
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++.+... .+|. .+++|++|+| .++.+...|. .+++|++|+|.++.+.. +-...++|+.|+
T Consensus 61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~L-s~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT--SLPA---LPPELRTLEV-SGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS--CCCC---CCTTCCEEEE-CSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEE
T ss_pred CCCcEEEecCCCCC--CCCC---cCCCCCEEEc-CCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEE
Confidence 35666666554322 3443 2456666666 5555544443 56666666666655433 112456666666
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----EEEeCCCeeEEEEEeccccceeecCCCCceEEEEE
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----AVIMAPNLQLIRIVDNMLMEYEVHEMQSIQQATLD 283 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~~i~~P~L~~L~~~~~~~~~~~~~~~~sL~~l~l~ 283 (318)
+.++....- . ...++|+.|++++| +.-..++|+.|.+.++...... ..+++|+.+++.
T Consensus 128 L~~N~l~~l--------------p---~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls 189 (622)
T 3g06_A 128 IFGNQLTSL--------------P---VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVS 189 (622)
T ss_dssp CCSSCCSCC--------------C---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECC
T ss_pred CCCCCCCcC--------------C---CCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECC
Confidence 666654210 0 12367888887777 2123466777777776544222 445778877775
Q ss_pred EE
Q 048811 284 LQ 285 (318)
Q Consensus 284 ~~ 285 (318)
.+
T Consensus 190 ~N 191 (622)
T 3g06_A 190 DN 191 (622)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 98
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.92 E-value=2.9e-06 Score=73.53 Aligned_cols=148 Identities=13% Similarity=0.106 Sum_probs=98.0
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
.++++|+++...... ..+..+..+++|++|++ .++.+...+. ...+++|++|+|.++.+.+..+...+..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 76 SHLSTLILTGNPIQS-LALGAFSGLSSLQKLVA-VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp TTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC-TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred cCCCEEECCCCccCc-cChhhhcCCccccEEEC-CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 478888887653221 12345567899999999 7776655432 4589999999999998876555667888999999
Q ss_pred eeeeeecCCCCCCCceeeeccccceEEEEEEcCccc----eEEEeee-------EEEeCCCeeEEEEEecccc---ceee
Q 048811 206 LSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLR----GMSYHHR-------AVIMAPNLQLIRIVDNMLM---EYEV 271 (318)
Q Consensus 206 L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~----~L~i~~~-------~~i~~P~L~~L~~~~~~~~---~~~~ 271 (318)
|++.++...... ... + -..++|+ .|+++++ .....++|++|+++++... ...+
T Consensus 154 L~Ls~N~l~~~~-------~~~-----~-~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 154 LDLSSNKIQSIY-------CTD-----L-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp EECCSSCCCEEC-------GGG-----G-HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTT
T ss_pred EECCCCCCCcCC-------HHH-----h-hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHh
Confidence 999999772100 000 0 0123344 5666665 1223347999999887654 2345
Q ss_pred cCCCCceEEEEEEEeccCC
Q 048811 272 HEMQSIQQATLDLQHWESD 290 (318)
Q Consensus 272 ~~~~sL~~l~l~~~~~~~~ 290 (318)
.++++|+.+.+..+.+..+
T Consensus 221 ~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTCCSCCEEECCSSCBCCC
T ss_pred cccccccEEEccCCccccc
Confidence 7788999988876655433
No 99
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=1.7e-06 Score=87.07 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=59.4
Q ss_pred CceEEEEEEccCccccCCC--CCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcc-cce
Q 048811 129 NVREMEIDIIQYAPMQLPG--CVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPS-LTE 205 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~ 205 (318)
++++|+++.+... .+|. .+..+++|+.|+| .++.+...|....+++|++|+|.++.+. .+..-+..++. |+.
T Consensus 549 ~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~L-s~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 549 KIQIFYMGYNNLE--EFPASASLQKMVKLGLLDC-VHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TCCEEECCSSCCC--BCCCHHHHTTCTTCCEEEC-TTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred CccEEEeeCCcCC--ccCChhhhhcCCCCCEEEC-CCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence 7888888776443 6777 6777888888888 7776665565557888888888888776 34445677888 888
Q ss_pred eeeeeecC
Q 048811 206 LSLTVLIQ 213 (318)
Q Consensus 206 L~l~~c~~ 213 (318)
|.|.++..
T Consensus 624 L~Ls~N~L 631 (876)
T 4ecn_A 624 LGFSHNKL 631 (876)
T ss_dssp EECCSSCC
T ss_pred EECcCCCC
Confidence 88888865
No 100
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=5e-06 Score=75.34 Aligned_cols=190 Identities=15% Similarity=0.157 Sum_probs=102.5
Q ss_pred HHHHHHHhhCCCcceEeEEEEEeeCCCC-CC---ChhHHHHHH-HHCCceEEEEEEccCc--------cccCCCCCccCC
Q 048811 87 NNFIESVMAGTDPVSIHTFSLRSVNAIR-RD---RFPLWVSQA-IMRNVREMEIDIIQYA--------PMQLPGCVYSSM 153 (318)
Q Consensus 87 ~~~~~~v~~~~~~~~l~~l~l~~~~~~~-~~---~~~~wl~~a-~~~~l~~L~l~~~~~~--------~~~lp~~~~~~~ 153 (318)
+.|.+|+...... .++.+.+.... ++ .. .+..+...+ ...+++.|.+...... ...+...+..++
T Consensus 95 ~~~~~fl~~~~~~-~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P 172 (362)
T 2ra8_A 95 NLMDKILKDKKLP-SLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP 172 (362)
T ss_dssp CHHHHHHHCTTGG-GCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT
T ss_pred HHHHHHhcCCCch-hcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC
Confidence 3455566554333 48888887432 22 11 122233212 1268999987543111 112334445678
Q ss_pred cccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhc-CCcccceeeeeeecCCCCCCCceeeeccccceEE
Q 048811 154 TLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFC-SCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLT 232 (318)
Q Consensus 154 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~ 232 (318)
+|+.|.| .++.....+. ...++|++|.|..+.+.++.+..+.. .+|+|+.|.|..+.....+ ...+.. +. ..
T Consensus 173 ~L~~L~L-~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~--~~~~~~--l~-~~ 245 (362)
T 2ra8_A 173 LLNNLKI-KGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF--DGDMNV--FR-PL 245 (362)
T ss_dssp TCCEEEE-ECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC--CSCGGG--TG-GG
T ss_pred CCcEEEE-eCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc--chhHHH--HH-HH
Confidence 9999999 6663223333 45899999999998887776766653 7999999999643210000 000000 00 00
Q ss_pred EEE-EcCccceEEEeee-----------EEEeCCCeeEEEEEeccccc-------eeecCCCCceEEEEEEE
Q 048811 233 FVV-LFASLRGMSYHHR-----------AVIMAPNLQLIRIVDNMLME-------YEVHEMQSIQQATLDLQ 285 (318)
Q Consensus 233 l~i-~~~~L~~L~i~~~-----------~~i~~P~L~~L~~~~~~~~~-------~~~~~~~sL~~l~l~~~ 285 (318)
+.. ..|+|+.|.+.+| ..-..|+|++|.++.+.... ..+.++++|+.+.+..+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 000 2467777777765 01135667777775554321 01234566777666433
No 101
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.90 E-value=3.3e-07 Score=75.64 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=41.2
Q ss_pred CCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 148 CVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 148 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+..+++|++|+| .++.+...|....+++|++|+|.++.+.+ +...+..+|.|+.|++.++..
T Consensus 43 ~~~~l~~L~~L~l-s~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 43 TLSTLKACKHLAL-STNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp HHHHTTTCSEEEC-SEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC
T ss_pred HHhcCCCCCEEEC-CCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC
Confidence 4455667777777 66666555544466777777777777653 445555667777777777765
No 102
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.87 E-value=3.7e-06 Score=77.88 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=37.8
Q ss_pred CCCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhhcCc
Q 048811 20 VPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHAWTS 61 (318)
Q Consensus 20 ~~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~lw~~ 61 (318)
...|.|+.||+|++.+||+||+.+|+++++.|||+|+++...
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 457899999999999999999999999999999999975443
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=2.9e-06 Score=73.30 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=78.2
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++..... .++. +..+++|+.|+| .++.+...+.... ++|++|+|.++.+.+- . -+..++.|+.|+
T Consensus 63 ~~L~~L~L~~N~i~--~~~~-l~~l~~L~~L~L-~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 63 TNLKELHLSHNQIS--DLSP-LKDLTKLEELSV-NRNRLKNLNGIPS-ACLSRLFLDNNELRDT--D-SLIHLKNLEILS 134 (263)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCSSCCEEEC-CSSCCSCCTTCCC-SSCCEEECCSSCCSBS--G-GGTTCTTCCEEE
T ss_pred CCCCEEECCCCccC--CChh-hccCCCCCEEEC-CCCccCCcCcccc-CcccEEEccCCccCCC--h-hhcCcccccEEE
Confidence 57888888765322 2333 566788888888 7777666554334 8888888888877663 2 366788888888
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee------EEEeCCCeeEEEEEecccc
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR------AVIMAPNLQLIRIVDNMLM 267 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~------~~i~~P~L~~L~~~~~~~~ 267 (318)
+.++...+ ...+ -..++|+.|+++++ .....++|++|.+.++...
T Consensus 135 Ls~N~i~~--------------~~~l-~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 135 IRNNKLKS--------------IVML-GFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CTTSCCCB--------------CGGG-GGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred CCCCcCCC--------------ChHH-ccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCccc
Confidence 88887621 1100 03467888888877 1234677888888887643
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.86 E-value=1.1e-06 Score=79.41 Aligned_cols=175 Identities=12% Similarity=0.064 Sum_probs=111.9
Q ss_pred CCceEEEEEEccCcccc---CCCCCccCC-cccEEEecccceecCCCC--cCC-----CCCCceeEeeEEEeCcch---h
Q 048811 128 RNVREMEIDIIQYAPMQ---LPGCVYSSM-TLEVLRLHTAFRFADPPD--GVC-----FPQLKILQIYITHPENRV---T 193 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~---lp~~~~~~~-~L~~L~L~~~~~~~~~~~--~~~-----~~~L~~L~L~~~~~~~~~---l 193 (318)
+++++|+++.+...... +...+..++ +|++|+| .++.+..... ... +++|++|+|.++.+.+.. +
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L-s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNL-SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEEC-CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEEC-cCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 45999998876322111 112333455 8999999 7776654321 112 389999999999987654 5
Q ss_pred hhhhcCC-cccceeeeeeecCCCCCCCceeeeccccceEEEE--EE--cCccceEEEeee-EE-----------EeC-CC
Q 048811 194 EKLFCSC-PSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV--VL--FASLRGMSYHHR-AV-----------IMA-PN 255 (318)
Q Consensus 194 ~~ll~~c-p~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~--i~--~~~L~~L~i~~~-~~-----------i~~-P~ 255 (318)
...+..+ +.|++|++.+|...+. ....+. +. ..+|+.|++++| +. ... ++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~------------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSK------------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGS------------CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred HHHHHhCCCCccEEECcCCcCCcH------------HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 5566667 8999999999987322 111110 11 258999999987 10 123 49
Q ss_pred eeEEEEEeccccce-------eecCC-CCceEEEEEEEeccCCCCChhhHHHHhcC-CCceeEEEeecCcC
Q 048811 256 LQLIRIVDNMLMEY-------EVHEM-QSIQQATLDLQHWESDTVDPQRARNLIEG-VATTACLILSGGVL 317 (318)
Q Consensus 256 L~~L~~~~~~~~~~-------~~~~~-~sL~~l~l~~~~~~~~~~~~~~~~~~l~~-l~~v~~L~l~~~~~ 317 (318)
|++|.++++..... .+... ++|+++++..+..... ....+...+.. .++++.|.|+++.+
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK--SYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS--CHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh--HHHHHHHHHhcCCCCceEEECcCCCC
Confidence 99999998865311 23455 4899998876542221 24446666666 45999999998764
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.86 E-value=8e-06 Score=79.29 Aligned_cols=146 Identities=19% Similarity=0.124 Sum_probs=95.2
Q ss_pred eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCce
Q 048811 101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKI 180 (318)
Q Consensus 101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~ 180 (318)
.++.|.+....-. .+.. ...+++.|+++.+... .+|. ..++|++|+| .++.+...|. .+++|++
T Consensus 62 ~L~~L~L~~N~l~---~lp~-----~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~L-s~N~l~~l~~--~l~~L~~ 125 (622)
T 3g06_A 62 HITTLVIPDNNLT---SLPA-----LPPELRTLEVSGNQLT--SLPV---LPPGLLELSI-FSNPLTHLPA--LPSGLCK 125 (622)
T ss_dssp TCSEEEECSCCCS---CCCC-----CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEE-CSCCCCCCCC--CCTTCCE
T ss_pred CCcEEEecCCCCC---CCCC-----cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEEC-cCCcCCCCCC--CCCCcCE
Confidence 4888887754321 1111 1358999999876432 4555 5689999999 8887766655 7889999
Q ss_pred eEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----EEEeCCCe
Q 048811 181 LQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----AVIMAPNL 256 (318)
Q Consensus 181 L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~~i~~P~L 256 (318)
|+|.++.+.. +-...|+|++|++.+|....- . -..++|+.|.++++ +....++|
T Consensus 126 L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l~~l--------------~---~~~~~L~~L~L~~N~l~~l~~~~~~L 183 (622)
T 3g06_A 126 LWIFGNQLTS-----LPVLPPGLQELSVSDNQLASL--------------P---ALPSELCKLWAYNNQLTSLPMLPSGL 183 (622)
T ss_dssp EECCSSCCSC-----CCCCCTTCCEEECCSSCCSCC--------------C---CCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred EECCCCCCCc-----CCCCCCCCCEEECcCCcCCCc--------------C---CccCCCCEEECCCCCCCCCcccCCCC
Confidence 9998887654 333569999999999976211 1 02356777777766 22344778
Q ss_pred eEEEEEeccccceeecCCCCceEEEEEEE
Q 048811 257 QLIRIVDNMLMEYEVHEMQSIQQATLDLQ 285 (318)
Q Consensus 257 ~~L~~~~~~~~~~~~~~~~sL~~l~l~~~ 285 (318)
++|.++++..... -..+++|+.+.+.-+
T Consensus 184 ~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N 211 (622)
T 3g06_A 184 QELSVSDNQLASL-PTLPSELYKLWAYNN 211 (622)
T ss_dssp CEEECCSSCCSCC-CCCCTTCCEEECCSS
T ss_pred cEEECCCCCCCCC-CCccchhhEEECcCC
Confidence 8888887765421 123567777766544
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.84 E-value=1.9e-05 Score=66.16 Aligned_cols=120 Identities=20% Similarity=0.177 Sum_probs=65.1
Q ss_pred CcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811 153 MTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT 230 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~ 230 (318)
++|+.|+| .+..+...+ ....+++|++|+|.++.+... ....+.+++.|+.|+|.++....-+ ...
T Consensus 32 ~~l~~L~l-~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~-------~~~--- 99 (220)
T 2v9t_B 32 ETITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITELP-------KSL--- 99 (220)
T ss_dssp TTCCEEEC-CSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCCCC-------TTT---
T ss_pred cCCCEEEC-CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCccC-------HhH---
Confidence 46677777 555443332 233566777777766665432 1334556677777777766552110 000
Q ss_pred EEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811 231 LTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW 287 (318)
Q Consensus 231 ~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~ 287 (318)
+ -..++|+.|+++++ ..-..++|++|.+.++... ...+..+++|+.+.+..+.+
T Consensus 100 --f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 100 --F-EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp --T-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred --c-cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 0 02345555555554 1113467777777776543 22356678888877765544
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.84 E-value=7e-06 Score=67.98 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=26.7
Q ss_pred cCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 151 SSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 151 ~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+++|++|+| .++.+...+. ...+++|++|+|.++.+..- ....+..++.|++|++.++..
T Consensus 50 ~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l 112 (208)
T 2o6s_A 50 ELTSLTQLYL-GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQL 112 (208)
T ss_dssp TCTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred ccccCcEEEC-CCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcC
Confidence 3445555555 4443333322 12445555555554444321 122234455555555554443
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.83 E-value=3.2e-05 Score=65.19 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=66.2
Q ss_pred CcccEEEecccceecCC-CC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811 153 MTLEVLRLHTAFRFADP-PD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT 230 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~-~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~ 230 (318)
++|+.|+| .++.+... +. ...+++|++|+|.++.+..- -...+.+++.|+.|+|.++....-. ...
T Consensus 40 ~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~-------~~~--- 107 (229)
T 3e6j_A 40 TNAQILYL-HDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLP-------SAV--- 107 (229)
T ss_dssp TTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC-------TTT---
T ss_pred CCCCEEEc-CCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccC-------hhH---
Confidence 45666666 55444433 11 23556666666665554321 1233455566666666655441100 000
Q ss_pred EEEEEEcCccceEEEeee-------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHH
Q 048811 231 LTFVVLFASLRGMSYHHR-------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNL 300 (318)
Q Consensus 231 ~~l~i~~~~L~~L~i~~~-------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~ 300 (318)
+ -..++|+.|.++++ .....++|++|.+.++... ...+..+++|+.+.+..+.+..+..+...+..+
T Consensus 108 --~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~ 184 (229)
T 3e6j_A 108 --F-DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW 184 (229)
T ss_dssp --T-TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHH
T ss_pred --h-CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHH
Confidence 0 02244555555544 0123567777777776543 224667888888877665543332223344445
Q ss_pred hc
Q 048811 301 IE 302 (318)
Q Consensus 301 l~ 302 (318)
+.
T Consensus 185 ~~ 186 (229)
T 3e6j_A 185 VA 186 (229)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 109
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.83 E-value=1.4e-06 Score=85.06 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=57.1
Q ss_pred CCceEEEEEEccCccccCCC--CCccCCcccEEEecccceec-CCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcc-c
Q 048811 128 RNVREMEIDIIQYAPMQLPG--CVYSSMTLEVLRLHTAFRFA-DPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPS-L 203 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-L 203 (318)
.++++|+++.+... .+|. .+..+++|+.|+| .++.+. ..|....+++|++|+|.++.+. .+..-+..++. |
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L-~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L 379 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLEC-LYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQV 379 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEEC-CSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTC
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeC-cCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccC
Confidence 57888888776433 6777 6777788888888 666655 4454446778888888877765 34444667777 8
Q ss_pred ceeeeeeecC
Q 048811 204 TELSLTVLIQ 213 (318)
Q Consensus 204 e~L~l~~c~~ 213 (318)
+.|.+.++..
T Consensus 380 ~~L~Ls~N~l 389 (636)
T 4eco_A 380 ENLSFAHNKL 389 (636)
T ss_dssp CEEECCSSCC
T ss_pred cEEEccCCcC
Confidence 8888887765
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.81 E-value=2.3e-05 Score=75.23 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=91.6
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.+++.|+++..... .+| ..+++|+.|+| .++.+...|. -..+|++|+|.++.+.. +.. .+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~L-s~N~l~~ip~--l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI--SLP---ELPASLEYLDA-CDNRLSTLPE--LPASLKHLDVDNNQLTM--LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS--CCC---CCCTTCCEEEC-CSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc--ccc---cccCCCCEEEc-cCCCCCCcch--hhcCCCEEECCCCcCCC--CCC---cCccccEEe
Confidence 46777777665333 455 23577888888 6666655544 12278888887776654 222 578888888
Q ss_pred eeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeE-----EEeCCCeeEEEEEeccccce-eecCCCCc----
Q 048811 208 LTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRA-----VIMAPNLQLIRIVDNMLMEY-EVHEMQSI---- 277 (318)
Q Consensus 208 l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~-----~i~~P~L~~L~~~~~~~~~~-~~~~~~sL---- 277 (318)
+.++.... ... ..++|+.|+++++- .+. ++|++|+++++..... .+.+ +|
T Consensus 147 Ls~N~l~~--------------lp~---~l~~L~~L~Ls~N~L~~lp~l~-~~L~~L~Ls~N~L~~lp~~~~--~L~~~~ 206 (571)
T 3cvr_A 147 ADNNQLTM--------------LPE---LPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTNLLESLPAVPV--RNHHSE 206 (571)
T ss_dssp CCSSCCSC--------------CCC---CCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSSCCCCC---------
T ss_pred CCCCccCc--------------CCC---cCCCcCEEECCCCCCCCcchhh-CCCCEEECcCCCCCchhhHHH--hhhccc
Confidence 88877621 111 34688888888871 122 7899999988865411 1221 45
Q ss_pred ---eEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 278 ---QQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 278 ---~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
+.+.+..+... .+..-+..+++++.|.|+++.+
T Consensus 207 ~~L~~L~Ls~N~l~-------~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-------HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CCEEEECCSSCCC-------CCCGGGGGSCTTEEEECCSSSC
T ss_pred ccceEEecCCCcce-------ecCHHHhcCCCCCEEEeeCCcC
Confidence 76666544321 1223344589999999998865
No 111
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.81 E-value=1.4e-05 Score=64.47 Aligned_cols=59 Identities=10% Similarity=-0.021 Sum_probs=34.4
Q ss_pred cCCcccEEEecccceecCCCCcCCC-CCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 151 SSMTLEVLRLHTAFRFADPPDGVCF-PQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 151 ~~~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+.+|+.|+| .++.+...+....+ ++|+.|+|.++.+.+- .-+..++.|+.|++.++..
T Consensus 17 ~~~~L~~L~l-~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 17 NAVRDRELDL-RGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp CTTSCEEEEC-TTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC
T ss_pred CcCCceEEEe-eCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc
Confidence 4556677777 66555544433333 3677777766665542 3355666677777766655
No 112
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.75 E-value=1.5e-07 Score=85.84 Aligned_cols=91 Identities=12% Similarity=0.184 Sum_probs=55.2
Q ss_pred HHHHHHCCceEEEEEEccCccc---cCCCCCc-cCCcccEEEecccceecCC---CCcCCCCCCceeEeeEEEeCcch--
Q 048811 122 VSQAIMRNVREMEIDIIQYAPM---QLPGCVY-SSMTLEVLRLHTAFRFADP---PDGVCFPQLKILQIYITHPENRV-- 192 (318)
Q Consensus 122 l~~a~~~~l~~L~l~~~~~~~~---~lp~~~~-~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~-- 192 (318)
+...+...+++|+++.+..... .+...+. .+++|++|+| .++.+.+. .....+++|++|+|.++.+.+..
T Consensus 66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L-s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL-ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC-TTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe-cCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 3334456788888876632211 1222222 2368888888 77654321 11124678888888888887765
Q ss_pred -hhhhh-cCCcccceeeeeeecC
Q 048811 193 -TEKLF-CSCPSLTELSLTVLIQ 213 (318)
Q Consensus 193 -l~~ll-~~cp~Le~L~l~~c~~ 213 (318)
+...+ ..++.|++|+|.+|..
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l 167 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPL 167 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCC
T ss_pred HHHHHHHhcCCccceeeCCCCCC
Confidence 33333 3578888888888876
No 113
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.73 E-value=1.4e-05 Score=78.25 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=14.0
Q ss_pred HHhcCCCceeEEEeecCcC
Q 048811 299 NLIEGVATTACLILSGGVL 317 (318)
Q Consensus 299 ~~l~~l~~v~~L~l~~~~~ 317 (318)
..+..+++++.|+++.+.+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CTTTTCTTCCEEECCSSCC
T ss_pred cccccCCCCCEEECCCCCC
Confidence 3466788888888887653
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.70 E-value=2.4e-05 Score=75.15 Aligned_cols=148 Identities=12% Similarity=0.084 Sum_probs=98.9
Q ss_pred eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCce
Q 048811 101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKI 180 (318)
Q Consensus 101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~ 180 (318)
.++.+.+....-. .+. ....+++.|+++.+... .+|. +.. +|+.|+| .++.+...|. .+++|+.
T Consensus 81 ~L~~L~Ls~N~l~---~ip-----~~l~~L~~L~Ls~N~l~--~ip~-l~~--~L~~L~L-s~N~l~~lp~--~l~~L~~ 144 (571)
T 3cvr_A 81 QITVLEITQNALI---SLP-----ELPASLEYLDACDNRLS--TLPE-LPA--SLKHLDV-DNNQLTMLPE--LPALLEY 144 (571)
T ss_dssp TCSEEECCSSCCS---CCC-----CCCTTCCEEECCSSCCS--CCCC-CCT--TCCEEEC-CSSCCSCCCC--CCTTCCE
T ss_pred CCCEEECcCCCCc---ccc-----cccCCCCEEEccCCCCC--Ccch-hhc--CCCEEEC-CCCcCCCCCC--cCccccE
Confidence 4777777643221 111 11258999998876433 3666 333 9999999 8877766665 7899999
Q ss_pred eEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeeeEEEe----CCCe
Q 048811 181 LQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHRAVIM----APNL 256 (318)
Q Consensus 181 L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~~~i~----~P~L 256 (318)
|+|.++.+.. +.. .+++|+.|++.++.... ... +. ++|+.|+++++-... .++|
T Consensus 145 L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~--------------lp~--l~-~~L~~L~Ls~N~L~~lp~~~~~L 202 (571)
T 3cvr_A 145 INADNNQLTM--LPE---LPTSLEVLSVRNNQLTF--------------LPE--LP-ESLEALDVSTNLLESLPAVPVRN 202 (571)
T ss_dssp EECCSSCCSC--CCC---CCTTCCEEECCSSCCSC--------------CCC--CC-TTCCEEECCSSCCSSCCCCC---
T ss_pred EeCCCCccCc--CCC---cCCCcCEEECCCCCCCC--------------cch--hh-CCCCEEECcCCCCCchhhHHHhh
Confidence 9999988764 232 67899999999998731 111 22 889999998871111 1267
Q ss_pred -------eEEEEEecccc--ceeecCCCCceEEEEEEEe
Q 048811 257 -------QLIRIVDNMLM--EYEVHEMQSIQQATLDLQH 286 (318)
Q Consensus 257 -------~~L~~~~~~~~--~~~~~~~~sL~~l~l~~~~ 286 (318)
+.|.++++... ...+.++++|+.+++..+.
T Consensus 203 ~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 99999887654 2335569999998886553
No 115
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.68 E-value=2.4e-05 Score=70.84 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=31.8
Q ss_pred CCCeeEEEEEecccc----ce--eecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 253 APNLQLIRIVDNMLM----EY--EVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 253 ~P~L~~L~~~~~~~~----~~--~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
.|+|++|.+..+... .. ....+|.|+.+.|..+.. .......+...+..+++++.|+|+.+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L--~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL--TDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC--BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC--ChHHHHHHHhhcccCCcceEEECCCCc
Confidence 467777777665432 01 112466777777643311 000012233334557778888877664
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.68 E-value=7e-06 Score=68.01 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=81.3
Q ss_pred cccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCC
Q 048811 142 PMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPA 219 (318)
Q Consensus 142 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 219 (318)
...+|..+ .++|++|+| .++.+...+. ...+++|++|+|.++.+..- ....+..++.|++|++.++......
T Consensus 19 l~~~p~~~--~~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-- 92 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDL-ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLP-- 92 (208)
T ss_dssp CSSCCSCC--CTTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred ccCCCCCC--CCCCcEEEc-CCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccC--
Confidence 34555443 358999999 7777665543 34899999999999887643 3455778999999999998762110
Q ss_pred ceeeeccccceEEEEEEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEe
Q 048811 220 NFIIQSTTLNTLTFVVLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQH 286 (318)
Q Consensus 220 ~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~ 286 (318)
...+ -..++|+.|+++++ + .-..++|++|.+.++... ...+.++++|+.+.+..+.
T Consensus 93 ----------~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 93 ----------NGVF-DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ----------TTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ----------HhHh-cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 0000 02467777777766 0 123466777777665433 1224556677776665543
No 117
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.68 E-value=2.7e-05 Score=71.83 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=36.7
Q ss_pred CCCCccCCCCChHHHHHHhhcCChhhHhhhhhcchhhHhh
Q 048811 19 KVPEDRISALPDSVLSNILTFLPLEDAVATSSLSQRWRHA 58 (318)
Q Consensus 19 ~~~~d~is~LPd~vL~~Ils~L~~~d~~~ts~vskrWr~l 58 (318)
....|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 3467999999999999999999999999999999999863
No 118
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.67 E-value=1.2e-05 Score=68.04 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=103.2
Q ss_pred CCceEEEEEEccCccccCCC-CCccCCcccEEEeccc-ceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCccc
Q 048811 128 RNVREMEIDIIQYAPMQLPG-CVYSSMTLEVLRLHTA-FRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSL 203 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 203 (318)
.+++.|+++.... ...++. .+..+++|++|+| .+ ..+...+ ...++++|++|+|.++.+.. +.. +..++.|
T Consensus 55 ~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l-~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L 129 (239)
T 2xwt_C 55 PNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEI-RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST 129 (239)
T ss_dssp TTCCEEEEECCSS-CCEECTTTEESCTTCCEEEE-EEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred CCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEEC-CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence 4788898887531 223444 4456789999999 65 4443333 23478999999999998765 444 6788888
Q ss_pred c---eeeeeee-cCCCCCCCceeeeccccceEEEEEEcCccc-eEEEeee--EEE-----eCCCeeEEEEEecc-cc---
Q 048811 204 T---ELSLTVL-IQPDDPPANFIIQSTTLNTLTFVVLFASLR-GMSYHHR--AVI-----MAPNLQLIRIVDNM-LM--- 267 (318)
Q Consensus 204 e---~L~l~~c-~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~-~L~i~~~--~~i-----~~P~L~~L~~~~~~-~~--- 267 (318)
+ .|++.++ ... . +.... + -..++|+ .|+++++ ..+ ..++|++|.+.++. ..
T Consensus 130 ~~L~~L~l~~N~~l~-~------i~~~~-----~-~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 130 DIFFILEITDNPYMT-S------IPVNA-----F-QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp CSEEEEEEESCTTCC-E------ECTTT-----T-TTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEEC
T ss_pred ccccEEECCCCcchh-h------cCccc-----c-cchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCC
Confidence 8 9999888 441 0 00000 0 0246777 8887776 111 23689999998884 43
Q ss_pred ceeecCC-CCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 268 EYEVHEM-QSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 268 ~~~~~~~-~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
...+.++ ++|+.+.+..+....-+ . ..+++++.|.+++..
T Consensus 197 ~~~~~~l~~~L~~L~l~~N~l~~l~--~-------~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 197 KDAFGGVYSGPSLLDVSQTSVTALP--S-------KGLEHLKELIARNTW 237 (239)
T ss_dssp TTTTTTCSBCCSEEECTTCCCCCCC--C-------TTCTTCSEEECTTC-
T ss_pred HHHhhccccCCcEEECCCCccccCC--h-------hHhccCceeeccCcc
Confidence 2346678 89999988654322111 1 167889999887653
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.66 E-value=4.3e-05 Score=64.39 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=79.7
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
.+++.|+++...... ..|..+..+++|++|+| .++.+...+. ...+++|++|+|.++.+..- ....+..+++|+.
T Consensus 40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L-~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITK-LEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCc-cCHHHhhCccCCcEEEC-CCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence 477888877653221 12344556788888888 7776655543 24788888888888877643 2445677888888
Q ss_pred eeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEeccc
Q 048811 206 LSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNML 266 (318)
Q Consensus 206 L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~ 266 (318)
|.+.++....- .. .. -..++|+.|+++++ ..-..++|++|.+.++..
T Consensus 117 L~Ls~N~l~~l-------p~---~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 117 LFMCCNKLTEL-------PR---GI----ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCCCSC-------CT---TG----GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EeccCCccccc-------Cc---cc----ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 88888876211 00 00 13467888888776 122357899999988764
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.64 E-value=4.5e-06 Score=70.05 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=84.2
Q ss_pred ccCCCCCccCCcccEEEecccceecCC-CC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCC
Q 048811 143 MQLPGCVYSSMTLEVLRLHTAFRFADP-PD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPA 219 (318)
Q Consensus 143 ~~lp~~~~~~~~L~~L~L~~~~~~~~~-~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 219 (318)
..+|..+ .+.++.|+| .+..+... +. ...+++|++|+|.+..+..- ....+.+++.|++|.|.++......
T Consensus 24 ~~iP~~~--~~~~~~L~L-~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~-- 97 (220)
T 2v70_A 24 NKIPEHI--PQYTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENVQ-- 97 (220)
T ss_dssp SSCCSCC--CTTCSEEEC-CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred ccCccCC--CCCCCEEEc-CCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCccC--
Confidence 3466543 346789999 77665544 22 34899999999999887653 2335778999999999999773110
Q ss_pred ceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811 220 NFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW 287 (318)
Q Consensus 220 ~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~ 287 (318)
...+ -..++|+.|+++++ .....++|++|.+.++... ...+..+++|+.+.+..+.+
T Consensus 98 ----------~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 98 ----------HKMF-KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ----------GGGG-TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ----------HhHh-cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 0000 03467888888876 1224577888888776543 23466778888887766554
No 121
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.63 E-value=1.3e-05 Score=73.90 Aligned_cols=37 Identities=30% Similarity=0.556 Sum_probs=35.2
Q ss_pred CCccCCCCChH----HHHHHhhcCChhhHhhhhhcchhhHh
Q 048811 21 PEDRISALPDS----VLSNILTFLPLEDAVATSSLSQRWRH 57 (318)
Q Consensus 21 ~~d~is~LPd~----vL~~Ils~L~~~d~~~ts~vskrWr~ 57 (318)
..|.|+.||+| ++.+||+||+.+++++++.|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 57899999999 99999999999999999999999994
No 122
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.58 E-value=7.1e-05 Score=72.07 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCCeeEEEEEecccc----ceeecCCCCceEEEEEEE
Q 048811 253 APNLQLIRIVDNMLM----EYEVHEMQSIQQATLDLQ 285 (318)
Q Consensus 253 ~P~L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~ 285 (318)
.++|++|.++++... ...++.+++|+++.+..+
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 466777777666432 234567888998887654
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.56 E-value=2.2e-05 Score=73.35 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=49.0
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++++|+++.+... .+| .+..+++|++|++ .++.+...|. ..++|++|+|.++.+.. +.. +.+++.|+.|.
T Consensus 131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l-~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDV-DNNSLKKLPD--LPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS--SCC-CCTTCTTCCEEEC-CSSCCSCCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC--CCc-ccCCCCCCCEEEC-CCCcCcccCC--CcccccEEECcCCcCCc--Ccc-ccCCCCCCEEE
Confidence 36777776655332 355 3566677888888 6666554443 34577777777776654 222 56778888888
Q ss_pred eeeecC
Q 048811 208 LTVLIQ 213 (318)
Q Consensus 208 l~~c~~ 213 (318)
+.+|..
T Consensus 202 l~~N~l 207 (454)
T 1jl5_A 202 ADNNSL 207 (454)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 877765
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.56 E-value=0.00013 Score=65.81 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=69.8
Q ss_pred cccEEEecccceecCCCC--cC-CCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811 154 TLEVLRLHTAFRFADPPD--GV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT 230 (318)
Q Consensus 154 ~L~~L~L~~~~~~~~~~~--~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~ 230 (318)
.++.|+| .+..+...+. .. .+++|++|+|.++.+..-. ...+.+++.|+.|+|.++....- ....
T Consensus 40 ~l~~L~L-s~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~--- 107 (361)
T 2xot_A 40 YTALLDL-SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTL-------DEFL--- 107 (361)
T ss_dssp TCSEEEC-CSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEE-------CTTT---
T ss_pred CCCEEEC-CCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCCcC-------CHHH---
Confidence 4566666 4444433321 11 5666666666666554321 22345666666666666654100 0000
Q ss_pred EEEEEEcCccceEEEeee--EE------EeCCCeeEEEEEeccccc---eee---cCCCCceEEEEEEEeccCCCCChhh
Q 048811 231 LTFVVLFASLRGMSYHHR--AV------IMAPNLQLIRIVDNMLME---YEV---HEMQSIQQATLDLQHWESDTVDPQR 296 (318)
Q Consensus 231 ~~l~i~~~~L~~L~i~~~--~~------i~~P~L~~L~~~~~~~~~---~~~---~~~~sL~~l~l~~~~~~~~~~~~~~ 296 (318)
+ -..++|+.|+++++ .. -..++|+.|.++++.... ..+ ..+++|+.++|..+....-+
T Consensus 108 --~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----- 179 (361)
T 2xot_A 108 --F-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP----- 179 (361)
T ss_dssp --T-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-----
T ss_pred --h-CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-----
Confidence 0 02245555555555 11 134677777777765431 122 46888888877654322111
Q ss_pred HHHHhcCCCc--eeEEEeecCc
Q 048811 297 ARNLIEGVAT--TACLILSGGV 316 (318)
Q Consensus 297 ~~~~l~~l~~--v~~L~l~~~~ 316 (318)
...+..+++ ++.|.|+++-
T Consensus 180 -~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 180 -LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp -HHHHHHSCHHHHTTEECCSSC
T ss_pred -HHHhhhccHhhcceEEecCCC
Confidence 223444454 3667776653
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.48 E-value=6.3e-05 Score=62.97 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=76.4
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
.+++|+++........-+..+..+++|++|+| .+..+...+ ...++++|++|+|.+..+... ....+.+++.|++|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L-~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 110 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINF-SNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTL 110 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEEC-CCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEE
Confidence 45666666543222211223456788888888 666554433 345788888888888877543 34456788888888
Q ss_pred eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEeccc
Q 048811 207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNML 266 (318)
Q Consensus 207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~ 266 (318)
++.++......+ ..+ -..++|+.|+++++ ..-..++|++|.+.++..
T Consensus 111 ~Ls~N~l~~~~~------------~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 111 MLRSNRITCVGN------------DSF-IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECTTSCCCCBCT------------TSS-TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCcCCeECH------------hHc-CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 888887621100 000 03467888888776 112367899999988764
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.45 E-value=5.1e-06 Score=67.03 Aligned_cols=81 Identities=17% Similarity=0.075 Sum_probs=54.9
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL 208 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 208 (318)
++++|+++..... .+|......++|+.|+| .++.+...+....+++|++|+|.++.+..- -..++..+|.|+.|++
T Consensus 20 ~L~~L~l~~n~l~--~i~~~~~~~~~L~~L~L-s~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIP--VIENLGATLDQFDAIDF-SDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCC--SCCCGGGGTTCCSEEEC-CSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCc--hhHHhhhcCCCCCEEEC-CCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEEC
Confidence 5677766655332 33432222348999999 777665555556788999999988887643 2344578899999999
Q ss_pred eeecC
Q 048811 209 TVLIQ 213 (318)
Q Consensus 209 ~~c~~ 213 (318)
.++..
T Consensus 96 ~~N~i 100 (176)
T 1a9n_A 96 TNNSL 100 (176)
T ss_dssp CSCCC
T ss_pred CCCcC
Confidence 88876
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.44 E-value=0.0002 Score=66.78 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=18.3
Q ss_pred cccEEEecccceecCCCCcCCCCCCceeEeeEEEeC
Q 048811 154 TLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPE 189 (318)
Q Consensus 154 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 189 (318)
+|+.|++ .++.+...|....+++|++|++.++.+.
T Consensus 216 ~L~~L~l-~~n~l~~lp~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 216 SLESIVA-GNNILEELPELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp TCCEEEC-CSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred cccEEEC-cCCcCCcccccCCCCCCCEEECCCCcCC
Confidence 5566666 5554444444445555555555555443
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.36 E-value=0.00013 Score=65.84 Aligned_cols=142 Identities=17% Similarity=0.108 Sum_probs=91.9
Q ss_pred CceEEEEEEccCccccCCCCCc--cCCcccEEEecccceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 129 NVREMEIDIIQYAPMQLPGCVY--SSMTLEVLRLHTAFRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~--~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.++.|+++.... ..++...+ .+++|+.|+| .++.+...+ ....+++|++|+|.+..+..- ....+.++++|+
T Consensus 40 ~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L-~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 115 (361)
T 2xot_A 40 YTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLL-SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE 115 (361)
T ss_dssp TCSEEECCSSCC--CEECTTSSSSCCTTCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CCCEEECCCCCC--CccChhhhhhcccccCEEEC-CCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence 577777766532 23444433 6789999999 777655443 345889999999998877543 244577889999
Q ss_pred eeeeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee----E-------EEeCCCeeEEEEEeccccc---ee
Q 048811 205 ELSLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR----A-------VIMAPNLQLIRIVDNMLME---YE 270 (318)
Q Consensus 205 ~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~----~-------~i~~P~L~~L~~~~~~~~~---~~ 270 (318)
.|+|.++....- .... + -..++|+.|+++++ + ....++|+.|+++++.... ..
T Consensus 116 ~L~L~~N~i~~~-------~~~~-----~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 116 VLLLYNNHIVVV-------DRNA-----F-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp EEECCSSCCCEE-------CTTT-----T-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred EEECCCCcccEE-------CHHH-----h-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence 999998876210 0000 0 03478888888887 1 0357899999999886542 23
Q ss_pred ecCCCC--ceEEEEEEEec
Q 048811 271 VHEMQS--IQQATLDLQHW 287 (318)
Q Consensus 271 ~~~~~s--L~~l~l~~~~~ 287 (318)
+..++. ++.+.+..+.+
T Consensus 183 ~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHSCHHHHTTEECCSSCE
T ss_pred hhhccHhhcceEEecCCCc
Confidence 456666 36677765544
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.29 E-value=0.0002 Score=56.85 Aligned_cols=106 Identities=13% Similarity=0.052 Sum_probs=70.4
Q ss_pred eEeEEEEEeeCCCCCCChhHHHHHHHHCCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC-CCCcC-CCCCC
Q 048811 101 SIHTFSLRSVNAIRRDRFPLWVSQAIMRNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD-PPDGV-CFPQL 178 (318)
Q Consensus 101 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~-~~~~L 178 (318)
.++.+.+....-. ...+..++ ....++++|+++.+..... ..+..+++|++|+| .++.+.. .|... .+++|
T Consensus 25 ~L~~L~l~~n~l~-~~~i~~~~--~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 25 AVRELVLDNCKSN-DGKIEGLT--AEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL-SENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCSEEECCSCBCB-TTBCSSCC--GGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEE-ESCCCCSCCCHHHHHCTTC
T ss_pred cCCEEECCCCCCC-hhhHHHHH--HhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEEC-cCCcCchHHHHHHhhCCCC
Confidence 4777777643311 01122221 1125789999888743332 55567789999999 7777666 44433 48999
Q ss_pred ceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 179 KILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 179 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
++|+|.++.+.+......+..+|.|+.|++.++..
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 99999999887643224567899999999999876
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.24 E-value=0.00053 Score=55.88 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=45.3
Q ss_pred ccCCCCCccCCcccEEEecccceecCCCC---cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 143 MQLPGCVYSSMTLEVLRLHTAFRFADPPD---GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 143 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
..+|..+. .+|++|+| .+..+...+. ...+++|++|+|.+..+... ....+.+.+.|++|+|.++..
T Consensus 21 ~~ip~~~~--~~l~~L~l-~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLL-NDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp SSCCSCCC--TTCSEEEC-CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC
T ss_pred CcCccCCC--CCCCEEEC-CCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC
Confidence 34555443 37888888 6666555432 34788888888888877643 234566788888888888776
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.21 E-value=0.00089 Score=53.55 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=64.9
Q ss_pred CcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccce
Q 048811 153 MTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNT 230 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~ 230 (318)
++|++|+| .+..+...+. ...+++|++|+|.++.+... ....+..++.|+.|++.++.....
T Consensus 28 ~~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~-------------- 91 (177)
T 2o6r_A 28 SSATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSL-------------- 91 (177)
T ss_dssp TTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC--------------
T ss_pred CCCcEEEe-CCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCcccc--------------
Confidence 57888888 7666555433 24678888888888776532 234467788888888888766211
Q ss_pred EEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811 231 LTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW 287 (318)
Q Consensus 231 ~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~ 287 (318)
.... .-..++|++|.+.++... ...+..+++|+.+.+..+.+
T Consensus 92 -----~~~~----------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 92 -----PNGV----------FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp -----CTTT----------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -----CHHH----------hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 0000 012455666666555432 22356788999988876654
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.13 E-value=0.00011 Score=57.27 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=62.9
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecC-CCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFAD-PPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
.++++|+++.+..... ..+..+++|++|+| .++.+.. .|... .+++|++|+|.++.+.+......+..+|.|++
T Consensus 42 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 42 EELEFLSTINVGLTSI---ANLPKLNKLKKLEL-SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCCEEECTTSCCCCC---TTCCCCTTCCEEEC-CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred CCCcEEECcCCCCCCc---hhhhcCCCCCEEEC-CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 5788888877643332 55667889999999 8887766 44333 59999999999999876433356789999999
Q ss_pred eeeeeecC
Q 048811 206 LSLTVLIQ 213 (318)
Q Consensus 206 L~l~~c~~ 213 (318)
|++.+|..
T Consensus 118 L~l~~N~l 125 (149)
T 2je0_A 118 LDLFNCEV 125 (149)
T ss_dssp EECTTCGG
T ss_pred EeCcCCcc
Confidence 99999976
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.13 E-value=0.00018 Score=69.06 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=71.2
Q ss_pred cccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEE
Q 048811 154 TLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTF 233 (318)
Q Consensus 154 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l 233 (318)
.|+.|+| .++.+...|....+++|++|+|.++.+. .+..-+..+++|+.|+|.++... ..
T Consensus 442 ~L~~L~L-s~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~--------------~l--- 501 (567)
T 1dce_A 442 DVRVLHL-AHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE--------------NV--- 501 (567)
T ss_dssp TCSEEEC-TTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC--------------CC---
T ss_pred CceEEEe-cCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCC--------------CC---
Confidence 4667777 6666655555556777777777777665 24445667777777777777651 00
Q ss_pred EEEcCccceEEEeeeEEEeCCCeeEEEEEecccc----ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeE
Q 048811 234 VVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM----EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTAC 309 (318)
Q Consensus 234 ~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~----~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~ 309 (318)
|.+ ...++|++|.++++... ...++++++|+.+.+..+.....+ .....++..+++++.
T Consensus 502 ----p~l----------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~---~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 502 ----DGV----------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE---GIQERLAEMLPSVSS 564 (567)
T ss_dssp ----GGG----------TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS---SCTTHHHHHCTTCSE
T ss_pred ----ccc----------CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc---cHHHHHHHHCcccCc
Confidence 111 11355556665555432 234667888888887655432211 122345566777777
Q ss_pred EE
Q 048811 310 LI 311 (318)
Q Consensus 310 L~ 311 (318)
|.
T Consensus 565 L~ 566 (567)
T 1dce_A 565 IL 566 (567)
T ss_dssp EE
T ss_pred cC
Confidence 74
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.07 E-value=0.00051 Score=56.11 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=32.2
Q ss_pred CcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 153 MTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
++|++|+| .+..+...|. ...+++|++|+|.+..+..- ....+.+++.|++|.|.++..
T Consensus 31 ~~l~~L~L-~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 31 RDVTELYL-DGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TTCCEEEC-CSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCEEEC-CCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCcc
Confidence 45666666 5554444432 23566666666666655432 123345566666666666654
No 135
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.06 E-value=0.00071 Score=56.43 Aligned_cols=139 Identities=9% Similarity=0.082 Sum_probs=96.0
Q ss_pred cEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEEE
Q 048811 156 EVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFVV 235 (318)
Q Consensus 156 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~i 235 (318)
+.+++ .+..+...|... .++|++|+|.+..+..- ....+.+++.|+.|.|.++....- ... .+ -
T Consensus 14 ~~v~c-~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~-------~~~-----~~-~ 77 (220)
T 2v9t_B 14 NIVDC-RGKGLTEIPTNL-PETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISEL-------APD-----AF-Q 77 (220)
T ss_dssp TEEEC-TTSCCSSCCSSC-CTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEE-------CTT-----TT-T
T ss_pred CEEEc-CCCCcCcCCCcc-CcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCc-------CHH-----Hh-h
Confidence 56777 666666555433 37999999999887643 233577899999999999977210 000 00 0
Q ss_pred EcCccceEEEeee--------EEEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCC
Q 048811 236 LFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGV 304 (318)
Q Consensus 236 ~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l 304 (318)
..++|+.|+++++ .....++|++|.+.++... ...+.++++|+.+++..+....-. ...+..+
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l 151 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA------KGTFSPL 151 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTC
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC------HHHHhCC
Confidence 3478999999987 1234688999999998654 235778999999988765432211 2346778
Q ss_pred CceeEEEeecCc
Q 048811 305 ATTACLILSGGV 316 (318)
Q Consensus 305 ~~v~~L~l~~~~ 316 (318)
++++.|+|+++-
T Consensus 152 ~~L~~L~L~~N~ 163 (220)
T 2v9t_B 152 RAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeCCCC
Confidence 999999998875
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.99 E-value=0.00052 Score=61.49 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=51.0
Q ss_pred CCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCC-C--CcCCCCCCceeEeeEE-EeCcchhhhhhcCCcc
Q 048811 128 RNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADP-P--DGVCFPQLKILQIYIT-HPENRVTEKLFCSCPS 202 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~-~--~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~ 202 (318)
.++++|+++... ...+|... ..+++|++|+| .++.+... + ...++++|+++.+.+. .+..- -...+.++++
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~L-s~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEI-SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEE-ECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTT
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEEC-cCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhccc
Confidence 478888887753 23566543 45788999999 66654332 2 2336677766544333 22211 2345678899
Q ss_pred cceeeeeeecC
Q 048811 203 LTELSLTVLIQ 213 (318)
Q Consensus 203 Le~L~l~~c~~ 213 (318)
|+.|.+.++..
T Consensus 106 L~~L~l~~n~l 116 (350)
T 4ay9_X 106 LQYLLISNTGI 116 (350)
T ss_dssp CCEEEEEEECC
T ss_pred ccccccccccc
Confidence 99999988876
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.98 E-value=0.00039 Score=56.70 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=79.7
Q ss_pred ccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeeccccceEEEE
Q 048811 155 LEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQSTTLNTLTFV 234 (318)
Q Consensus 155 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s~~~~~~~l~ 234 (318)
-+.+++ .+..+...|... +++|++|+|.+..+....-...+...+.|++|++.++......+ ..+
T Consensus 10 ~~~l~~-s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~- 74 (192)
T 1w8a_A 10 GTTVDC-TGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP------------NAF- 74 (192)
T ss_dssp TTEEEC-TTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT------------TTT-
T ss_pred CCEEEc-CCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH------------hHc-
Confidence 377888 777666666433 45999999999987654333457889999999999997731100 000
Q ss_pred EEcCccceEEEeee----E----EEeCCCeeEEEEEecccc---ceeecCCCCceEEEEEEEec
Q 048811 235 VLFASLRGMSYHHR----A----VIMAPNLQLIRIVDNMLM---EYEVHEMQSIQQATLDLQHW 287 (318)
Q Consensus 235 i~~~~L~~L~i~~~----~----~i~~P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~~~~~ 287 (318)
-..++|+.|+++++ + ....++|++|.++++... ...+..+++|+.+.+..+.+
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 03467888888887 1 124578888888887654 23466788888888766554
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.91 E-value=1.3e-05 Score=72.85 Aligned_cols=150 Identities=9% Similarity=0.029 Sum_probs=106.6
Q ss_pred CcccEEEecccceecCCCC-------cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeeec
Q 048811 153 MTLEVLRLHTAFRFADPPD-------GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQS 225 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~~-------~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~s 225 (318)
++|++|+| .++.+..... ....++|++|+|.++.+.+..+..+...+++|++|+|.+|...+.
T Consensus 72 ~~L~~L~L-s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~--------- 141 (372)
T 3un9_A 72 SSLRQLNL-AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE--------- 141 (372)
T ss_dssp TTCCEEEC-TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH---------
T ss_pred hhCCEEEe-cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH---------
Confidence 57999999 7776543211 013479999999999998887888888889999999999977321
Q ss_pred cccceEEEE--E--EcCccceEEEeee------------EEEeCCCeeEEEEEecccc-------ceeecCCCCceEEEE
Q 048811 226 TTLNTLTFV--V--LFASLRGMSYHHR------------AVIMAPNLQLIRIVDNMLM-------EYEVHEMQSIQQATL 282 (318)
Q Consensus 226 ~~~~~~~l~--i--~~~~L~~L~i~~~------------~~i~~P~L~~L~~~~~~~~-------~~~~~~~~sL~~l~l 282 (318)
....+. + ..++|+.|++++| .....++|++|+++++... ...+...++|+++++
T Consensus 142 ---~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 142 ---ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp ---HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred ---HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 111110 1 2478999999998 1135789999999998653 123556789999988
Q ss_pred EEEeccCCCCChhhHHHHhcCCCceeEEEeecCcC
Q 048811 283 DLQHWESDTVDPQRARNLIEGVATTACLILSGGVL 317 (318)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~~ 317 (318)
..+... ......+...+...++++.|+|+++.+
T Consensus 219 s~N~i~--~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 219 AYNGAG--DTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CSSCCC--HHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCCCCC--HHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 655321 111345677788889999999998864
No 139
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.85 E-value=0.00014 Score=69.88 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=13.7
Q ss_pred CCeeEEEEEecccc---ceeecCCCCceEEEEE
Q 048811 254 PNLQLIRIVDNMLM---EYEVHEMQSIQQATLD 283 (318)
Q Consensus 254 P~L~~L~~~~~~~~---~~~~~~~~sL~~l~l~ 283 (318)
++|++|.++++... ...++++++|+.+++.
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 44555555544322 1234445555555543
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.83 E-value=0.0029 Score=55.98 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCcccEEEeccc-ceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeee
Q 048811 152 SMTLEVLRLHTA-FRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSL 208 (318)
Q Consensus 152 ~~~L~~L~L~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 208 (318)
|.+|+.|.| .. ..........+|++|++|+|.+..+..- -...+.+|..+..+.+
T Consensus 100 ~~~L~~l~L-~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 100 KQTLEKVIL-SEKIKNIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPL 155 (329)
T ss_dssp CTTCCC-CB-CTTCCEECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECT
T ss_pred cCCCcEEEC-CccccchhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecC
Confidence 788888888 44 2222223455788899888876643221 1233455666665554
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.80 E-value=5.3e-05 Score=61.71 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=35.6
Q ss_pred cCCcccEEEecccc-eecCC------CCcCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecC
Q 048811 151 SSMTLEVLRLHTAF-RFADP------PDGVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 151 ~~~~L~~L~L~~~~-~~~~~------~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+++|++|+| .++ .+.+. ......++|++|+|.++.+.+++ +...+..++.|++|+|.+|..
T Consensus 34 ~~~~L~~L~L-~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 34 NDPDLEEVNL-NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TCTTCCEEEC-TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred cCCCCCEEEe-cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 4566777777 555 43221 01123566777777777666654 444455666677777766655
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.67 E-value=0.00028 Score=57.77 Aligned_cols=102 Identities=9% Similarity=0.001 Sum_probs=71.2
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCCcC-CCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPDGV-CFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
.++++|+++...... +| .+..+++|+.|+| .++.+...|... .+++|++|+|.++.+.+ +. -+..++.|+.|
T Consensus 48 ~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l-~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 48 KACKHLALSTNNIEK--IS-SLSGMENLRILSL-GRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL 120 (198)
T ss_dssp TTCSEEECSEEEESC--CC-CHHHHTTCCEEEE-EEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEE
T ss_pred CCCCEEECCCCCCcc--cc-ccccCCCCCEEEC-CCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEE
Confidence 588888887764332 55 6667789999999 777777665433 45889999999998876 33 36678999999
Q ss_pred eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee
Q 048811 207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR 248 (318)
Q Consensus 207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~ 248 (318)
++.++...+. . ....+ -..++|+.|+++++
T Consensus 121 ~l~~N~i~~~-------~----~~~~l-~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 121 YMSNNKITNW-------G----EIDKL-AALDKLEDLLLAGN 150 (198)
T ss_dssp EESEEECCCH-------H----HHHHH-TTTTTCSEEEECSC
T ss_pred ECCCCcCCch-------h----HHHHH-hcCCCCCEEEecCC
Confidence 9999877311 0 00011 14678899999887
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.66 E-value=0.00064 Score=54.42 Aligned_cols=82 Identities=21% Similarity=0.209 Sum_probs=58.4
Q ss_pred CCceEEEEEEccCccccCCCCC-ccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQLPGCV-YSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.++++|+++.... ..+|... ..+++|++|+| .++.+...+. ...+++|++|+|.+..+... ....+..++.|+
T Consensus 28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSL-SQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred CCCcEEEeCCCcc--cEeCHHHhcCcccccEEEC-CCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccC
Confidence 3678888776532 2444433 46789999999 7776665543 34789999999988877643 344567889999
Q ss_pred eeeeeeecC
Q 048811 205 ELSLTVLIQ 213 (318)
Q Consensus 205 ~L~l~~c~~ 213 (318)
.|++.++..
T Consensus 104 ~L~l~~N~l 112 (177)
T 2o6r_A 104 ELALDTNQL 112 (177)
T ss_dssp EEECCSSCC
T ss_pred EEECcCCcc
Confidence 999998876
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.56 E-value=0.0013 Score=63.09 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=51.5
Q ss_pred CceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceee
Q 048811 129 NVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELS 207 (318)
Q Consensus 129 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 207 (318)
.++.|+++.... ..+|. +..+++|+.|+| .++.+...|. ...+++|++|+|.++.+.+ +. -+..++.|+.|+
T Consensus 442 ~L~~L~Ls~n~l--~~lp~-~~~l~~L~~L~L-s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDL--TVLCH-LEQLLLVTHLDL-SHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCC--SSCCC-GGGGTTCCEEEC-CSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCC--CCCcC-ccccccCcEeec-CcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEE
Confidence 566666655432 23555 666778888888 6666655543 3367788888888777665 34 466778888888
Q ss_pred eeeecC
Q 048811 208 LTVLIQ 213 (318)
Q Consensus 208 l~~c~~ 213 (318)
|.++..
T Consensus 515 Ls~N~l 520 (567)
T 1dce_A 515 LCNNRL 520 (567)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 877765
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.54 E-value=0.0021 Score=52.34 Aligned_cols=82 Identities=22% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccce
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTE 205 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 205 (318)
.++++|+++..... .+|..+...++|+.|+| .+..+...+. ..++++|++|+|.+..+..-. ...+.++++|+.
T Consensus 31 ~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~L-s~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQFT--LVPKELSNYKHLTLIDL-SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSCCC--SCCGGGGGCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCc--hhHHHhhcccCCCEEEC-CCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCE
Confidence 37888887765333 56666777899999999 7777665542 458899999999998876542 345778899999
Q ss_pred eeeeeecC
Q 048811 206 LSLTVLIQ 213 (318)
Q Consensus 206 L~l~~c~~ 213 (318)
|+|.++..
T Consensus 107 L~L~~N~l 114 (193)
T 2wfh_A 107 LSLHGNDI 114 (193)
T ss_dssp EECCSSCC
T ss_pred EECCCCCC
Confidence 99999876
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.46 E-value=0.00048 Score=68.09 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=68.6
Q ss_pred CCCCccCCcccEEEecccceecCCC-CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCCceeee
Q 048811 146 PGCVYSSMTLEVLRLHTAFRFADPP-DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPANFIIQ 224 (318)
Q Consensus 146 p~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~~~~i~ 224 (318)
|..+..++.|+.|+| .++.+...+ ....+++|++|+|.++.+. .+..-+..+++|+.|+|.++... .
T Consensus 217 ~~~~~~l~~L~~L~L-s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~-------- 284 (727)
T 4b8c_D 217 KDSKYDDQLWHALDL-SNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-S-------- 284 (727)
T ss_dssp -----CCCCCCEEEC-TTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-S--------
T ss_pred hhhhccCCCCcEEEC-CCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-c--------
Confidence 445566788999999 777766554 3447899999999988876 34455678899999999988772 1
Q ss_pred ccccceEEEEEEcCccceEEEeeeEEEeCCCeeEEEEEecccc--ceeecCCCCceEEEEEEEe
Q 048811 225 STTLNTLTFVVLFASLRGMSYHHRAVIMAPNLQLIRIVDNMLM--EYEVHEMQSIQQATLDLQH 286 (318)
Q Consensus 225 s~~~~~~~l~i~~~~L~~L~i~~~~~i~~P~L~~L~~~~~~~~--~~~~~~~~sL~~l~l~~~~ 286 (318)
+. ..+ ...++|++|.++++... ...++++++|+.+.|..+.
T Consensus 285 ----------lp-~~~----------~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 285 ----------LP-AEL----------GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp ----------CC-SSG----------GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred ----------cC-hhh----------cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 00 001 11344555555554332 2247789999998886553
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.40 E-value=0.0072 Score=48.03 Aligned_cols=59 Identities=24% Similarity=0.125 Sum_probs=30.7
Q ss_pred CcccEEEecccceecCC-CC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 153 MTLEVLRLHTAFRFADP-PD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~-~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
++|+.|+| .+..+... +. ...+++|++|+|.+..+..- -...+.++++|+.|+|.++..
T Consensus 30 ~~l~~L~L-~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 30 TTTQVLYL-YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEc-CCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCcc
Confidence 45666666 55444433 21 23556666666666555432 223345556666666665544
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.37 E-value=0.00028 Score=69.75 Aligned_cols=102 Identities=12% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCceEEEEEEccCccccCCCCCccCCcccEEEecccceecCCCC-cCCCCCCceeEeeEEEeCcchhhhhhcCCccccee
Q 048811 128 RNVREMEIDIIQYAPMQLPGCVYSSMTLEVLRLHTAFRFADPPD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTEL 206 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 206 (318)
..++.|+++... ...+|..++.+++|++|+| .++.+...|. ...+++|++|+|.++.+. .+..-+.++++|+.|
T Consensus 224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~L-s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYL-NGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBC-TTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEE
T ss_pred CCCcEEECCCCC--CCCCChhhcCCCCCCEEEe-eCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEE
Confidence 467777776543 3367878888899999999 7777665554 347899999999998877 345556788999999
Q ss_pred eeeeecCCCCCCCceeeeccccceEEEEEEcCccceEEEeee
Q 048811 207 SLTVLIQPDDPPANFIIQSTTLNTLTFVVLFASLRGMSYHHR 248 (318)
Q Consensus 207 ~l~~c~~~~~~~~~~~i~s~~~~~~~l~i~~~~L~~L~i~~~ 248 (318)
.|.++....- .. .+ -..++|+.|+++++
T Consensus 299 ~L~~N~l~~l-------p~------~~-~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 299 YFFDNMVTTL-------PW------EF-GNLCNLQFLGVEGN 326 (727)
T ss_dssp ECCSSCCCCC-------CS------ST-TSCTTCCCEECTTS
T ss_pred ECCCCCCCcc-------Ch------hh-hcCCCccEEeCCCC
Confidence 9998876211 00 00 13467788877775
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.29 E-value=0.0096 Score=47.54 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=31.6
Q ss_pred CcccEEEecccceecCC-CC-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 153 MTLEVLRLHTAFRFADP-PD-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~-~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
++|+.|+| .+..+... +. ...+++|++|+|.+..+..- -..++.++++|+.|+|.++..
T Consensus 33 ~~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 33 TDKQRLWL-NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp TTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEe-CCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCcc
Confidence 56666666 55544443 21 23566666666666655432 122345566666666666554
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.08 E-value=0.0064 Score=48.57 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=61.4
Q ss_pred CCceEEEEEEccCccccC-CCCCccCCcccEEEecccceecCCCCc--CCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQL-PGCVYSSMTLEVLRLHTAFRFADPPDG--VCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
.++++|+++.... ..+ |..+...++|+.|+| .+..+...|.. ..+++|++|+|.+..+..- -...+..+++|+
T Consensus 33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L-s~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYF-NSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCS
T ss_pred CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEEC-CCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCC
Confidence 4788888876532 234 445567799999999 77777666543 4799999999999887643 234577899999
Q ss_pred eeeeeeecC
Q 048811 205 ELSLTVLIQ 213 (318)
Q Consensus 205 ~L~l~~c~~ 213 (318)
.|.|.+..+
T Consensus 109 ~L~L~~N~~ 117 (174)
T 2r9u_A 109 HIYLYNNPW 117 (174)
T ss_dssp EEECCSSCB
T ss_pred EEEeCCCCc
Confidence 999999876
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.96 E-value=0.0079 Score=47.77 Aligned_cols=82 Identities=20% Similarity=0.075 Sum_probs=59.8
Q ss_pred CCceEEEEEEccCccccC-CCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 128 RNVREMEIDIIQYAPMQL-PGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
..+++|+++... ...+ |..+...++|+.|+| .+..+...+. ...+++|++|+|.+..+..- -...+..+++|+
T Consensus 30 ~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L-s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc--CCccChhhhcCcccCCEEEC-CCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCC
Confidence 477888777653 2234 344556789999999 7777666543 24899999999999887643 234577899999
Q ss_pred eeeeeeecC
Q 048811 205 ELSLTVLIQ 213 (318)
Q Consensus 205 ~L~l~~c~~ 213 (318)
.|.|.+...
T Consensus 106 ~L~L~~N~~ 114 (170)
T 3g39_A 106 HIWLLNNPW 114 (170)
T ss_dssp EEECCSSCB
T ss_pred EEEeCCCCC
Confidence 999998866
No 152
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.60 E-value=0.071 Score=47.33 Aligned_cols=128 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred cccCCCCCccCCcccEEEecccceecCCCC--cCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecCCCCCCC
Q 048811 142 PMQLPGCVYSSMTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQPDDPPA 219 (318)
Q Consensus 142 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 219 (318)
-.++|..+ .+++++|+| .+..+...|. ..++++|++|+|+++.+.+.-=...+.+++.|+++.+..+.....
T Consensus 21 Lt~iP~~l--~~~l~~L~L-s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~--- 94 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRF-VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY--- 94 (350)
T ss_dssp CCSCCTTC--CTTCSEEEE-ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE---
T ss_pred CCccCcCc--CCCCCEEEc-cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc---
Confidence 34566654 368999999 7776655543 358999999999988764321124567888888777766654211
Q ss_pred ceeeeccccceEEEEEEcCccceEEEeee--------EEEeCCCeeEEEEEecccc----ceeecCCC-CceEEEEEE
Q 048811 220 NFIIQSTTLNTLTFVVLFASLRGMSYHHR--------AVIMAPNLQLIRIVDNMLM----EYEVHEMQ-SIQQATLDL 284 (318)
Q Consensus 220 ~~~i~s~~~~~~~l~i~~~~L~~L~i~~~--------~~i~~P~L~~L~~~~~~~~----~~~~~~~~-sL~~l~l~~ 284 (318)
|.. ..+ -..++|+.|.++++ ......++..+.+.+.... ...+..++ .++.+.+.-
T Consensus 95 ---l~~-----~~f-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 95 ---INP-----EAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp ---ECT-----TSB-CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred ---cCc-----hhh-hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 000 000 13578889988887 2234556777777664322 12233333 466665543
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.45 E-value=0.0016 Score=52.79 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=62.3
Q ss_pred CCCChhHHHHHHHH--CCceEEEEEEc-cCcc---ccCCCCCccCCcccEEEecccceecCCC------CcCCCCCCcee
Q 048811 114 RRDRFPLWVSQAIM--RNVREMEIDII-QYAP---MQLPGCVYSSMTLEVLRLHTAFRFADPP------DGVCFPQLKIL 181 (318)
Q Consensus 114 ~~~~~~~wl~~a~~--~~l~~L~l~~~-~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~~~------~~~~~~~L~~L 181 (318)
....+..++..+.. ..+++|+++.+ ..+. ..+...+..+++|++|+| .++.+.+.. .....++|++|
T Consensus 20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~L-s~n~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSI-VGTRSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEEC-TTSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEEC-cCCCCChHHHHHHHHHHHhCCCcCEE
Confidence 34556666766655 45777777654 3221 123333445678888888 776653310 01145788888
Q ss_pred EeeEEEeCcch---hhhhhcCCcccceeee--eeecC
Q 048811 182 QIYITHPENRV---TEKLFCSCPSLTELSL--TVLIQ 213 (318)
Q Consensus 182 ~L~~~~~~~~~---l~~ll~~cp~Le~L~l--~~c~~ 213 (318)
+|.++.+.+.+ +...+..++.|++|+| .++..
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 88888888776 5555667888888888 66665
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.37 E-value=0.023 Score=50.36 Aligned_cols=80 Identities=20% Similarity=0.075 Sum_probs=39.2
Q ss_pred CceEEEEEE-ccCccccCC-CCCccCCcccEEEecccceecCCC-C-cCCCCCCceeEeeEEEeCcchhhhhhcCCcccc
Q 048811 129 NVREMEIDI-IQYAPMQLP-GCVYSSMTLEVLRLHTAFRFADPP-D-GVCFPQLKILQIYITHPENRVTEKLFCSCPSLT 204 (318)
Q Consensus 129 ~l~~L~l~~-~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 204 (318)
++++|+|+. .. ...+| ..+...++|+.|+| .+..+...+ . ...+++|++|+|.+..+..- -..++...+ |+
T Consensus 32 ~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l-~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~ 106 (347)
T 2ifg_A 32 NLTELYIENQQH--LQHLELRDLRGLGELRNLTI-VKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQ 106 (347)
T ss_dssp CCSEEECCSCSS--CCEECGGGSCSCCCCSEEEC-CSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CC
T ss_pred CeeEEEccCCCC--CCCcChhHhccccCCCEEEC-CCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ce
Confidence 466666653 21 11223 23344566666666 444443322 2 23566666666666655432 122233333 66
Q ss_pred eeeeeeecC
Q 048811 205 ELSLTVLIQ 213 (318)
Q Consensus 205 ~L~l~~c~~ 213 (318)
.|.|.+...
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 666665544
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.32 E-value=0.011 Score=53.96 Aligned_cols=57 Identities=9% Similarity=0.162 Sum_probs=27.1
Q ss_pred cCCcccEEEecccceecCC-CCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeee
Q 048811 151 SSMTLEVLRLHTAFRFADP-PDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTV 210 (318)
Q Consensus 151 ~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~ 210 (318)
.|.+|+.++| ....+... .....+.+|+++.|... +..- -...+.+|++|+.+.+..
T Consensus 178 ~c~~L~~l~l-~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I-~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 178 YCYNLKKADL-SKTKITKLPASTFVYAGIEEVLLPVT-LKEI-GSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TCTTCCEEEC-TTSCCSEECTTTTTTCCCSEEECCTT-CCEE-CTTTTTTCTTCCCEECCT
T ss_pred CcccCCeeec-CCCcceEechhhEeecccCEEEeCCc-hhee-hhhHhhCCCCCCEEecCC
Confidence 4556666666 33222111 12223455555555321 0000 134566788888888754
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.21 E-value=0.43 Score=43.28 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=11.7
Q ss_pred hhhcCCcccceeeeeeec
Q 048811 195 KLFCSCPSLTELSLTVLI 212 (318)
Q Consensus 195 ~ll~~cp~Le~L~l~~c~ 212 (318)
..+.+|++|+.+.+.+..
T Consensus 265 ~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TTTTTCTTCCEEEEESSC
T ss_pred hHhhCCCCCCEEEeCCcc
Confidence 446677777777775543
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.88 E-value=0.13 Score=45.05 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=14.8
Q ss_pred CCCCceeEeeEEEeCcchhhhhhcCCcccceeeeee
Q 048811 175 FPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTV 210 (318)
Q Consensus 175 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~ 210 (318)
+++|++|+|.+..+..- -...+.+|++|++|.+..
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCT
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCc
Confidence 44555555544322211 122344555555555433
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=92.41 E-value=0.074 Score=47.01 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=36.7
Q ss_pred cCCCCCccCCcccEEEeccc-ceecCCC--CcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeeecC
Q 048811 144 QLPGCVYSSMTLEVLRLHTA-FRFADPP--DGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 144 ~lp~~~~~~~~L~~L~L~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 213 (318)
.+|. +....+|+.|+| .+ ..+...+ ...++++|++|+|.+..+..- ....+.++++|+.|+|.+...
T Consensus 23 ~ip~-l~~~~~L~~L~l-~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYI-ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp TTTT-SCSCSCCSEEEC-CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC
T ss_pred ccCC-CCCCCCeeEEEc-cCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc
Confidence 4555 555566666666 43 3333322 133566666666666655432 233455666666666666654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.00 E-value=0.022 Score=48.98 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=48.7
Q ss_pred CCceEEEEEEccCccc-cCCCCCccCCcccEEEecccceecCCCCcCCCC--CCceeEeeEEEeCcc-----h-hhhhhc
Q 048811 128 RNVREMEIDIIQYAPM-QLPGCVYSSMTLEVLRLHTAFRFADPPDGVCFP--QLKILQIYITHPENR-----V-TEKLFC 198 (318)
Q Consensus 128 ~~l~~L~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~-----~-l~~ll~ 198 (318)
..++.|+++....... .+|..+..+++|+.|+| .+..+........+. +|++|+|.+..+.+. . ...++.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~L-s~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL-SGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEEC-TTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEEC-CCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 4677777766533221 34444456788888888 666554432222333 788888877776541 2 345677
Q ss_pred CCcccceeee
Q 048811 199 SCPSLTELSL 208 (318)
Q Consensus 199 ~cp~Le~L~l 208 (318)
.+|.|+.|+=
T Consensus 249 ~~P~L~~LDg 258 (267)
T 3rw6_A 249 RFPKLLRLDG 258 (267)
T ss_dssp HCTTCCEESS
T ss_pred HCcccCeECC
Confidence 8888887753
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=85.75 E-value=1.4 Score=39.43 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=26.6
Q ss_pred CCCeeEEEEEecc--ccceeecCCCCceEEEEEEEeccCCCCChhhHHHHhcCCCceeEEEeecCc
Q 048811 253 APNLQLIRIVDNM--LMEYEVHEMQSIQQATLDLQHWESDTVDPQRARNLIEGVATTACLILSGGV 316 (318)
Q Consensus 253 ~P~L~~L~~~~~~--~~~~~~~~~~sL~~l~l~~~~~~~~~~~~~~~~~~l~~l~~v~~L~l~~~~ 316 (318)
+.+|+.+.+.... .....+.++.+|+++.+.... ....-+..+.+++.+++..+.
T Consensus 333 C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~---------~~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 333 CEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR---------SQWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH---------HHHHTCBCCCCC---------
T ss_pred CCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce---------eehhhhhccCCCCEEEeCCCC
Confidence 4556666663321 224567789999988774321 112345677888888877654
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=85.55 E-value=0.39 Score=41.05 Aligned_cols=59 Identities=25% Similarity=0.138 Sum_probs=30.7
Q ss_pred CCcccEEEecccceecCCCC----cCCCCCCceeEeeEEEeCcch-hhhhhcCCcccceeeeeeecC
Q 048811 152 SMTLEVLRLHTAFRFADPPD----GVCFPQLKILQIYITHPENRV-TEKLFCSCPSLTELSLTVLIQ 213 (318)
Q Consensus 152 ~~~L~~L~L~~~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l~~c~~ 213 (318)
+++|+.|+| .+..+...+. ...+++|+.|+|.+..+.+.. +..+ .+. .|++|.|.++..
T Consensus 169 l~~L~~L~L-s~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 169 IPELLSLNL-SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSL 232 (267)
T ss_dssp CTTCCEEEC-TTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTT
T ss_pred CCCCCEEEC-CCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcC
Confidence 356666666 5444433221 125666666666666665542 3332 223 666666666554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.08 E-value=0.075 Score=43.33 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=42.1
Q ss_pred CCcccEEEecccc-eecCC------CCcCCCCCCceeEeeEEEeCcch---hhhhhcCCcccceeeeeeecCC
Q 048811 152 SMTLEVLRLHTAF-RFADP------PDGVCFPQLKILQIYITHPENRV---TEKLFCSCPSLTELSLTVLIQP 214 (318)
Q Consensus 152 ~~~L~~L~L~~~~-~~~~~------~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c~~~ 214 (318)
.++|++|+| .+. .+.+. .....-..|++|+|.++.+.+.+ +...+..-..|++|+|..+...
T Consensus 40 n~~L~~L~L-~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNI-NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEEC-TTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEEC-CCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 457888888 543 32211 01124567888888888888766 6667777788888888888773
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=80.39 E-value=0.57 Score=42.11 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=16.2
Q ss_pred CCCeeEEEEEecc--ccceeecCCCCceEEEEE
Q 048811 253 APNLQLIRIVDNM--LMEYEVHEMQSIQQATLD 283 (318)
Q Consensus 253 ~P~L~~L~~~~~~--~~~~~~~~~~sL~~l~l~ 283 (318)
+.+|+.+.+.... .....+.++++|+++.|.
T Consensus 342 c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 342 CTSLSNINFPLSLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCEEEECccccEehHHHhhCCCCCCEEEEC
Confidence 3455555553321 113456677777776663
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=80.11 E-value=0.18 Score=41.03 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=54.5
Q ss_pred CCChhHHHHHHHH--CCceEEEEEEc-cCc---cccCCCCCccCCcccEEEecccceecCCC-C-----cCCCCCCceeE
Q 048811 115 RDRFPLWVSQAIM--RNVREMEIDII-QYA---PMQLPGCVYSSMTLEVLRLHTAFRFADPP-D-----GVCFPQLKILQ 182 (318)
Q Consensus 115 ~~~~~~wl~~a~~--~~l~~L~l~~~-~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~-----~~~~~~L~~L~ 182 (318)
...++..+..+.. ..+++|.+... ..+ ...+-..+....+|+.|+| .++.+.+.- . ...-+.|++|+
T Consensus 26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L-~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSL-ANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEEC-TTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEc-cCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 4456666666655 34666666432 111 1112222333467888888 776654320 0 01456788888
Q ss_pred eeEEEeCcch---hhhhhcCCcccceeeeeee
Q 048811 183 IYITHPENRV---TEKLFCSCPSLTELSLTVL 211 (318)
Q Consensus 183 L~~~~~~~~~---l~~ll~~cp~Le~L~l~~c 211 (318)
|.+..+.+.+ +...+..-..|++|.|.++
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 8888888776 4444555566888888765
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=71.64 E-value=4.5 Score=36.08 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=30.7
Q ss_pred ccCCcccEEEecccceecCCCCcCCCCCCceeEeeE-EEeCcchhhhhhcCCcccceeeee
Q 048811 150 YSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYI-THPENRVTEKLFCSCPSLTELSLT 209 (318)
Q Consensus 150 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~l~ 209 (318)
..|.+|+.+.+.............+|.+|+++.|-. +..- -...+.+|.+|+++.|-
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I---~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQI---LDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEE---CTTTTTTCTTCCEEEEC
T ss_pred ccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEe---hHhHhhCCCCCCEEEEC
Confidence 456777777772222222223344677777777632 1110 12346677777777774
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=68.96 E-value=5 Score=35.43 Aligned_cols=15 Identities=7% Similarity=0.288 Sum_probs=9.5
Q ss_pred ceeecCCCCceEEEE
Q 048811 268 EYEVHEMQSIQQATL 282 (318)
Q Consensus 268 ~~~~~~~~sL~~l~l 282 (318)
...+.++.+|+++.|
T Consensus 326 ~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 326 VYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTTCTTCCCCCC
T ss_pred HHHhhCCCCCCEEEE
Confidence 345666777777665
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=63.23 E-value=4.4 Score=36.16 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=36.7
Q ss_pred CccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeee
Q 048811 149 VYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTV 210 (318)
Q Consensus 149 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~ 210 (318)
...|.+|+.+.+..+..........+|.+|+++.|-.. +..- =...+.+|.+|+.+.+..
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEI-GKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCEECCCT
T ss_pred ccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEE-hHHhccCCCCCCEEEECc
Confidence 34678899888833333333344557888888887421 1000 134577889999888753
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=53.82 E-value=12 Score=32.88 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=32.0
Q ss_pred CccCCcccEEEecccceecCCCCcCCCCCCceeEeeEEEeCcchhhhhhcCCcccceeeeeee
Q 048811 149 VYSSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYITHPENRVTEKLFCSCPSLTELSLTVL 211 (318)
Q Consensus 149 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 211 (318)
.+.|..|+.+.+.............++.+|+.+.+..-. ..- -...+.+|++|+++.+...
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i-~~i-~~~aF~~c~~L~~i~l~~~ 296 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKV-KTV-PYLLCSGCSNLTKVVMDNS 296 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCC-SEE-CTTTTTTCTTCCEEEECCT
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhccccccccc-eec-ccccccccccccccccccc
Confidence 346677887777222222222333466677777663321 000 1234667777777777543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=37.23 E-value=22 Score=26.17 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=22.7
Q ss_pred CcccEEEecccceecCCCC--cCCCCCCceeEeeEEEe
Q 048811 153 MTLEVLRLHTAFRFADPPD--GVCFPQLKILQIYITHP 188 (318)
Q Consensus 153 ~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~ 188 (318)
.+|+.|+| .+..+...+. ...+++|++|+|.+..+
T Consensus 31 ~~l~~L~L-s~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVL-TGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEEC-TTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEEC-CCCcCCccChhhhhhccccCEEEecCCCe
Confidence 46788888 6666555433 23677788887776654
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.61 E-value=38 Score=23.70 Aligned_cols=35 Identities=6% Similarity=-0.068 Sum_probs=17.2
Q ss_pred cCCcccEEEecccceecCCCCcCCCCCCceeEeeE
Q 048811 151 SSMTLEVLRLHTAFRFADPPDGVCFPQLKILQIYI 185 (318)
Q Consensus 151 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~ 185 (318)
.|.+|+++.|-............+|.+|+++.+..
T Consensus 18 ~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 56677777772222222223333555666555544
No 171
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=33.11 E-value=24 Score=23.51 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=16.7
Q ss_pred CCCccCCCCChHHHHHHhhcC
Q 048811 20 VPEDRISALPDSVLSNILTFL 40 (318)
Q Consensus 20 ~~~d~is~LPd~vL~~Ils~L 40 (318)
+.+=+|+.||.++...|...-
T Consensus 45 ~~EYhissLP~~~~~~l~~~~ 65 (76)
T 1tns_A 45 AIEYNANSLPVEAKAALLLRQ 65 (76)
T ss_dssp CCCEETTTSCHHHHHHHHHHT
T ss_pred eeEEeeccCCHHHHHHHHHHh
Confidence 445689999999999987653
No 172
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.90 E-value=59 Score=19.23 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=15.5
Q ss_pred CCCccCCCCChHHHHHHhhcC
Q 048811 20 VPEDRISALPDSVLSNILTFL 40 (318)
Q Consensus 20 ~~~d~is~LPd~vL~~Ils~L 40 (318)
...+-|+.||.||-..|+|--
T Consensus 16 VD~eVF~~LP~dIQ~Ells~~ 36 (48)
T 2kwv_A 16 VDQEVFKQLPADIQEEILSGK 36 (48)
T ss_dssp CCGGGTTTSCHHHHHHHTTCC
T ss_pred CCHHHHHHCcHHHHHHHHhcc
Confidence 345578888888888888753
Done!