BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048812
         (645 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/653 (43%), Positives = 404/653 (61%), Gaps = 68/653 (10%)

Query: 35  ANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
           + V P  + ++ +  +C+ + + E   R+H +++   L     +   + +     G +  
Sbjct: 228 SGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDE 287

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFD 151
           A  ++ + DE E+ +   ++   L++GY                   K  K+ +  QLFD
Sbjct: 288 AHGLLSRCDESEVDV---VLWTTLVSGYV------------------KSNKIDKARQLFD 326

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           K+  R ++SW TM+S Y   G Y E L L  +M  E V PDEV +V+++SA   L D ++
Sbjct: 327 KMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDL 386

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           G+++H F+    M + G L N L+D+Y KCGK+ EA +   +          W +++ G+
Sbjct: 387 GRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSA--ASWNSMLDGF 444

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISG-----MLNQDAEFKYK-------------- 312
            +S   D+AR  F+++ E++++SW  M++      + N+  E   K              
Sbjct: 445 CRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLI 504

Query: 313 ----SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEK 353
               SCA +GAL HGIWV+VYI+KN+I ID                +E+AY++F++I EK
Sbjct: 505 SLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEK 564

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           NV++WT+++AAYAM G A +AIDL+LEMEE G KPD VTFIALL+ACSHGGLVDEGY + 
Sbjct: 565 NVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYF 624

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           +K    YNI P + HYGCMVDLLGR GHLEE+  FI  MPI PDVSIWSSL+RACR H N
Sbjct: 625 NKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHN 684

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
           V+LAE AFK L E DP N+GAHVLL+NIYA AGR DD+S++R KL + G+ KQ G+++IE
Sbjct: 685 VELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIE 744

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIE-MTLQQQGLQETSLQHRERLAVAFGLISTSE 592
           Q G VH+F + ++    S +I  ML +IE   L +Q L +T+ QH ERLAVAFGLI+  E
Sbjct: 745 QNGVVHEFVASNLV---SADILCMLQDIERRLLVKQELSDTTSQHSERLAVAFGLINNQE 801

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            + IR+VN++R+C DCHS MK+ SQ Y+REIVIRDN RFHRF  G CSC+DYW
Sbjct: 802 NSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 197/540 (36%), Positives = 279/540 (51%), Gaps = 118/540 (21%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           +I + +SCS+I EF  IH+HLIT NL+ DP+I++QV  FL+   +L  A QI+    EPE
Sbjct: 38  IIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPE 97

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN------------------------- 138
             IWN+++EN+L  G PQEV   Y ++VT+ VLL+                         
Sbjct: 98  SIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHG 157

Query: 139 ----------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
                                 KCGKLKEVCQLF+K+ +RDVISWNTMISCY   GMYRE
Sbjct: 158 RILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYRE 217

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L L  +M   GV PDE+TMVSL+S   KL+DLEMGK LHL++ ++ + I GSLLN LVD
Sbjct: 218 ALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVD 277

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY KCGK+ EA  LL R +  EVDVVLWTTLVSGYVKSN+ D+AR+LFD+M ER+L+SWT
Sbjct: 278 MYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWT 337

Query: 297 LMISGM-----------LNQDAEFK------------YKSCASIGALYHGIWVHVYIKKN 333
            M+SG            L Q   F+              +C  +     G  VH +I   
Sbjct: 338 TMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTY 397

Query: 334 QISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID-- 376
            + +D                ++ A   F ++  K+   W S++  +  +G   KA D  
Sbjct: 398 GMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFF 457

Query: 377 -----------------------------LFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
                                        +F +M+ +  KPD+ T I+LLS+C+  G ++
Sbjct: 458 NKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALN 517

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
            G  +++       I         ++D+ G+ G +E +    T + I  +V +W++++ A
Sbjct: 518 HGI-WVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAA 575


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/709 (34%), Positives = 385/709 (54%), Gaps = 110/709 (15%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQ--- 98
           + +++R CSS+ + ++ H+H+I T +  DP  ++++F     +    L YA+++  +   
Sbjct: 35  ISLIDR-CSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQ 93

Query: 99  ---------------GDEPEIKIWNSI-IENQLINGYPQE-VFAIYLYLVTRTVLLN--- 138
                          G +P   IW  + + +     YP +  F   +        L+   
Sbjct: 94  PNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQ 153

Query: 139 --------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG 172
                                      CG L   C++F  +  +DV+SWN+MI+ +   G
Sbjct: 154 SLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKG 213

Query: 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
              + L L  KM +E V    VTMV ++SA  K+RDLE G+ +  ++EE+ + ++ +L N
Sbjct: 214 SPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLAN 273

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            ++DMY KCG I +A++L    E  E D V WTT++ GY  S + + AR + + M ++++
Sbjct: 274 AMLDMYTKCGSIEDAKRLFDAME--EKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDI 331

Query: 293 ISWTLMISGM-----------------------LNQDAEFK-YKSCASIGALYHGIWVHV 328
           ++W  +IS                         LNQ        +CA +GAL  G W+H 
Sbjct: 332 VAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHS 391

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           YIKKN I ++               ++E A ++F+ + +++V++W+++I   AM G   +
Sbjct: 392 YIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSE 451

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A+D+F +M+E   KP+ VTF  +  ACSH GLVDE      K    Y I P+ +HY C+V
Sbjct: 452 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIV 511

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           D+LGR+G+LE++  FI +MPIPP  S+W +LL AC+ H N+ LAE A   L E +P NDG
Sbjct: 512 DVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDG 571

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
           AHVLL+NIYAK+G+ D++S +R  +R  GLKK+ G S IE  G +H+F SGD  +P SE+
Sbjct: 572 AHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEK 631

Query: 554 IYLMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTI 596
           +Y  L+E+   L+  G                ++E SL  H E+LA+ +GLIST     I
Sbjct: 632 VYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAI 691

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R++ NLR+CGDCH+  K+ SQ+YNREI++RD  RFH F+ GQCSC D+W
Sbjct: 692 RVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/720 (36%), Positives = 390/720 (54%), Gaps = 113/720 (15%)

Query: 32  RKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DL 89
           R FAN   +SL        CS   + ++IH+ ++ T L  DP  ++++      +    L
Sbjct: 31  RYFANHPTLSLI-----DQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSL 85

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT--------------- 134
            YAQQ+  Q   P +  WN++I     +  P +   I+L ++ ++               
Sbjct: 86  DYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKA 145

Query: 135 -------------------VLLN--------------KCGKLKEVCQLFDKLPNRDVISW 161
                              VLL               KCG+L    ++F  +P RDV+SW
Sbjct: 146 ASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSW 205

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N+MI+ +   G   E L L  +M  + V P+ +TMV ++SA  K  D E G+ +H ++E 
Sbjct: 206 NSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER 265

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           + +  S +L N ++DMY KCG + +A++L  +  + E D+V WTT++ GY K  E D A+
Sbjct: 266 NRIGESLTLSNAMLDMYTKCGSVEDAKRLFDK--MPEKDIVSWTTMLVGYAKIGEYDAAQ 323

Query: 282 RLFDEMVERNLISWTLMIS-----GMLNQDAEFKYK-------------------SCASI 317
            +FD M  +++ +W  +IS     G   +  E  ++                   +CA +
Sbjct: 324 GIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQL 383

Query: 318 GALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVI 362
           GA+  G W+HVYIKK  + ++               +++ A  +F  +  K+V++W+++I
Sbjct: 384 GAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMI 443

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           A  AM GH + AI LF +M+E   KP+ VTF  +L ACSH GLV+EG  F ++   VY +
Sbjct: 444 AGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGV 503

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
            P ++HY CMVD+LGRAG LEE+   I  MP+ P  S+W +LL AC  H+NV LAE A  
Sbjct: 504 LPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACS 563

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L E +P N GA+VLL+NIYAKAG+ D +S +R  +RD+GLKK+ G S IE  G VH+F 
Sbjct: 564 QLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFL 623

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQETSL-QHRERLAVAF 585
            GD  +P +++IY  L+EI   L+  G                ++E +L  H E+LA+AF
Sbjct: 624 VGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAF 683

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GLIST +   IRIV NLR+CGDCHS  K+ S++Y+REI++RD  RFH F+ G CSC DYW
Sbjct: 684 GLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/706 (35%), Positives = 386/706 (54%), Gaps = 111/706 (15%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKI 106
           + C+S  + ++IH+ ++ TN + DP  ++++F    F+    L YA+++  Q  +P +  
Sbjct: 147 QQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYS 206

Query: 107 WNSIIENQLINGYPQEVFAIYL---------------------------YLVTRTV---- 135
           WN +I     +  P +   +++                           +LV + V    
Sbjct: 207 WNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMA 266

Query: 136 ----------LLNK-------CGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYRE 176
                     +LN        CG L     +F+ +   N+D++SWN+M++ +   G   +
Sbjct: 267 IKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDK 326

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L L  +M  EGV P+ VTMVS++SA  K  +L +G+ +  +++ + M ++ ++ N  +D
Sbjct: 327 ALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATID 386

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           M+ KCG++  A+ L    E  + DVV WTT++ GY K +E   AR +FD M  +++ +W 
Sbjct: 387 MFVKCGEVEIARGLFDNME--KRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWN 444

Query: 297 LMISGMLNQD------AEFK-------------------YKSCASIGALYHGIWVHVYIK 331
           ++ISG           A F+                     +CA +GA+  G W+H YIK
Sbjct: 445 VLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIK 504

Query: 332 KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           K +I ++               ++E A ++F  I  K+V++W+++IA  AM G  + AI+
Sbjct: 505 KERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIE 564

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LFL+M+ET  KP+ VTF  LL ACSH GLVDEG     +  RVY + PK +HY CMVD+L
Sbjct: 565 LFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVL 624

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAGHLEE+  FI  MP+ P  S+W +LL AC  H N++LAE A   L E +P N GA+V
Sbjct: 625 GRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYV 684

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+N+YAK G  + +S +R ++RD GLKK+ G S IE  G VH+F  GD  +P S +IY 
Sbjct: 685 LLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYA 744

Query: 557 MLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIV 599
            L+EI   L+  G                ++E +L+ H E++A+AFGLI    +  IRIV
Sbjct: 745 KLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIV 804

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C DCH+  K+ S+VY R+IV+RD  RFH F GG CSC+DYW
Sbjct: 805 KNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/713 (34%), Positives = 387/713 (54%), Gaps = 113/713 (15%)

Query: 41  SLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQ 98
           S  + ++ER C S+ + ++ H H+I T    DP  ++++F     +    L YA+++  +
Sbjct: 31  SRHISLIER-CVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDE 89

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAI--YLYLVTRT-VLLNK---------------- 139
             +P    WN++I  +     P  V +I  +L +V+ +    NK                
Sbjct: 90  IPKPNSFAWNTLI--RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147

Query: 140 -------------------------------CGKLKEVCQLFDKLPNRDVISWNTMISCY 168
                                          CG L   C++F  +  +DV+SWN+MI+ +
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
              G   + L L  KM +E V    VTMV ++SA  K+R+LE G+ +  ++EE+ + ++ 
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNL 267

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           +L N ++DMY KCG I +A++L    E  E D V WTT++ GY  S + + AR + + M 
Sbjct: 268 TLANAMLDMYTKCGSIEDAKRLFDAME--EKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325

Query: 289 ERNLISWTLMISGM-----------------------LNQDAEFK-YKSCASIGALYHGI 324
           ++++++W  +IS                         LNQ        +CA +GAL  G 
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385

Query: 325 WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
           W+H YIKK+ I ++               ++E + ++F+ + +++V++W+++I   AM G
Sbjct: 386 WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
              +A+D+F +M+E   KP+ VTF  +  ACSH GLVDE      +    Y I P+ +HY
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
            C+VD+LGR+G+LE++  FI +MPIPP  S+W +LL AC+ H N+ LAE A   L E +P
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            NDGAHVLL+NIYAK G+ +++S +R  +R  GLKK+ G S IE  G +H+F SGD  +P
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625

Query: 550 HSEEIYLMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSE 592
            SE++Y  L+E+   L+  G                ++E SL  H E+LA+ +GLIST  
Sbjct: 626 MSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 685

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              IR++ NLR+CGDCHS  K+ SQ+Y+REI++RD  RFH F+ GQCSC D+W
Sbjct: 686 PKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/707 (36%), Positives = 379/707 (53%), Gaps = 109/707 (15%)

Query: 45  IMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEP 102
           I++++ C++    +++H+H++ T L  DP  +T++F     +    L YA ++  Q   P
Sbjct: 35  ILIDK-CANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRP 93

Query: 103 EIKIWNSIIE----------------------------------------------NQLI 116
            +  WN++I                                                Q I
Sbjct: 94  NLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAI 153

Query: 117 NGYPQEV-FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
           +G   +  F   L++    +   +  G L     +F K+  +D++SWN+MIS +   G  
Sbjct: 154 HGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSP 213

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
            E L L  +M  E   P+ VTMV ++SA  K  DLE G+    ++E + + I+  L N +
Sbjct: 214 EEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAM 273

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           +DMY KCG + +A++L  + E  E D+V WTT++ GY K  + D ARR+FD M   ++ +
Sbjct: 274 LDMYVKCGSLEDARRLFDKME--EKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITA 331

Query: 295 WTLMISG-----------------MLNQDAE-------FKYKSCASIGALYHGIWVHVYI 330
           W  +IS                   LN++ +           +CA +GA+  G W+HVYI
Sbjct: 332 WNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYI 391

Query: 331 KKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           KK  I ++               ++E A ++F  +  ++V++W+++IA  AM GH + AI
Sbjct: 392 KKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAI 451

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           DLF +M+ET  KP+ VTF  LL ACSH GLVDEG  F ++   VY + P  +HY CMVD+
Sbjct: 452 DLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDI 511

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           LGRAG LEE+   I  MPI P  S+W +LL ACR + NV+LAE A   L ETD  N GA+
Sbjct: 512 LGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAY 571

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           VLL+NIYAKAG+ D +SR+R  ++  GL+K+ G S IE  G +H+F  GD  +P S EIY
Sbjct: 572 VLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIY 631

Query: 556 LMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTIRI 598
             L+EI   ++  G                ++E +L  H E+LA+A+GLI       IRI
Sbjct: 632 SKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQPIRI 691

Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           V NLR+CGDCHS  K+ S++YNR+I++RD  RFH F GG CSC DYW
Sbjct: 692 VKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/644 (38%), Positives = 362/644 (56%), Gaps = 68/644 (10%)

Query: 37  VCPVSLDVIMVERSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P S     + +SC+ +    E ++IH H++   L  DP + T +       G+LGYA+
Sbjct: 128 VEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAE 187

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
            +  +       + +++    LI GY                     G L +  +LF+++
Sbjct: 188 LVFSKS-----SLRDAVSFTALITGYTLR------------------GCLDDARRLFEEI 224

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P RD +SWN MI+ Y   G + E L    +M    V+P+E TMV+++SA  +   LE+G 
Sbjct: 225 PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN 284

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +  ++E+  +  +  L+N L+DMY KCG + +A+ L     I E D++ W  ++ GY  
Sbjct: 285 WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLF--EGICEKDIISWNVMIGGYSH 342

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
            N   EA  LF +M + N+    +    +L         +CA +GAL  G W+H YI K 
Sbjct: 343 MNSYKEALALFRKMQQSNVEPNDVTFVSIL--------PACAYLGALDLGKWIHAYIDKK 394

Query: 334 QISI----------------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
            + +                 NIE A  +F+ +  K++  W ++I+  AM GHA  A++L
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALEL 454

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M + G +PD +TF+ +LSACSH GLV+ G    S     Y+I PK+QHYGCM+DLLG
Sbjct: 455 FRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLG 514

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAG  +E+   + +M + PD +IW SLL ACR H NV+L E A KHL E +P N GA+VL
Sbjct: 515 RAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL 574

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           L+NIYA AGR DD++RIR KL D G+KK  G S IE    VH+F  GD  +  S++IY M
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKM 634

Query: 558 LNEIEMTLQQQG---------------LQETSL-QHRERLAVAFGLISTSEKTTIRIVNN 601
           L+EI+  L++ G                +E SL  H E+LA+AFGLIST  +TTIRIV N
Sbjct: 635 LDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKN 694

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LR+CG+CHS +K+ S+++NREI+ RD  RFH F+ G CSC DYW
Sbjct: 695 LRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           N+  A  LF  I + N ++W ++I   +++     AID ++ M   G +P+  TF  LL 
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLK 140

Query: 399 ACSHGGLVDEG 409
           +C+  G   EG
Sbjct: 141 SCAKVGATQEG 151


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 253/702 (36%), Positives = 368/702 (52%), Gaps = 110/702 (15%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKIWN 108
           CSS  + + +H+ ++ T L  DP  ++++F     +    L YA+ +  Q  +P +  WN
Sbjct: 35  CSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWN 94

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRT---------------------------------- 134
           ++I     +  P + F I+L L+ +                                   
Sbjct: 95  TLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIK 154

Query: 135 -------VLLNK-------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
                   +LN        CG L    +LF  +  +DV+SWN+MIS +       + L L
Sbjct: 155 LSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALEL 214

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             KM  E V P+ VTMV ++SA  K  DLE G+ +  ++E   +K+  +L N ++DMY K
Sbjct: 215 FLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTK 274

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG + +AQKL    E+ E DV  WT ++ GY K  + D AR +F+ M  + + +W ++IS
Sbjct: 275 CGSVDDAQKLFD--EMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLIS 332

Query: 301 GMLNQDAEFK-------------------------YKSCASIGALYHGIWVHVYIKKNQI 335
               Q+ + K                           +CA +GA+  G W+HVYIK+  I
Sbjct: 333 AY-EQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGI 391

Query: 336 SID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
            ++               ++E A ++F  + E++VY+W+++IA   M G  + AIDLF E
Sbjct: 392 VLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFE 451

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M+E   KP+ VTF  +L ACSH GLVDEG  F  +   VY + P+M+HY CMVD+LGRAG
Sbjct: 452 MQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAG 511

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
            LEE+   I  M   P  S+W +LL AC  H NV+L E A   L + +P N GA VLL+N
Sbjct: 512 FLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSN 571

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           IYAK GR + +S +R  +RD  LKK+ G S IE  G VH+F  GD  +P S  IY  L E
Sbjct: 572 IYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEE 631

Query: 561 IEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLR 603
           I   L+  G                L+E +L  H E+LA+AFGL++ +    IR+V NLR
Sbjct: 632 IATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLR 691

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ICGDCH+F K+ S+VY+R+I++RD  RFH F+ G CSC DYW
Sbjct: 692 ICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/635 (37%), Positives = 362/635 (57%), Gaps = 71/635 (11%)

Query: 49  RSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           +SC+   +  E +++H+H +   L   P + T +       G+L +A+ +    D+  ++
Sbjct: 135 KSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVF---DKSTLR 191

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
             +++    LI GY  E                  G + +  +LFD++P +DV+SWN MI
Sbjct: 192 --DAVSFTALITGYVSE------------------GHVDDARRLFDEIPAKDVVSWNAMI 231

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           + Y   G + E L   ++M    VSP++ TMVS++SA   LR LE+GK +  ++ +    
Sbjct: 232 AGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFG 291

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  L+N LVDMY KCG+IG A+KL    E  + DV+LW T++ GY   +  +EA  LF+
Sbjct: 292 KNLQLVNALVDMYSKCGEIGTARKLFDGME--DKDVILWNTMIGGYCHLSLYEEALVLFE 349

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI----- 340
            M+  N+    +    +L         +CAS+GAL  G WVH YI KN     N+     
Sbjct: 350 VMLRENVTPNDVTFLAVL--------PACASLGALDLGKWVHAYIDKNLKGTGNVNNVSL 401

Query: 341 --------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                         E+A  +F  +  +++  W ++I+  AM GHA++A+ LF EM   G 
Sbjct: 402 WTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGF 461

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           +PD +TF+ +LSAC+  G V+ G+ + S  ++ Y I PK+QHYGCM+DLL R+G  +E+ 
Sbjct: 462 QPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAK 521

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             + +M + PD +IW SLL ACR H  V+  E+  + L E +P N GA+VLL+NIYA AG
Sbjct: 522 VLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAG 581

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
           R DD+++IR KL D G+KK  G + IE  G VH+F  GD F+P SE I+ ML+E++  L+
Sbjct: 582 RWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLE 641

Query: 567 QQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
           + G                +E +L QH E+LA+AFGLIST   +TIRIV NLR+C +CHS
Sbjct: 642 ETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHS 701

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             K+ S+++NREI+ RD  RFH F+ G CSC D W
Sbjct: 702 ATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 42/292 (14%)

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
           ++  WNT+I  ++        L L S+M   G+ P+  T  SL  +  K +     K LH
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150

Query: 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
               +  + +   +   L+ MY + G++  A+ +  +  +   D V +T L++GYV    
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLR--DAVSFTALITGYVSEGH 208

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLN--------------QDAEFK---------YKS 313
            D+ARRLFDE+  ++++SW  MI+G +               Q+A+             +
Sbjct: 209 VDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSA 268

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSEISEKNVYL 357
           C  + +L  G W+  +++       N++L                A  LF  + +K+V L
Sbjct: 269 CGHLRSLELGKWIGSWVRDRGFG-KNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVIL 327

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           W ++I  Y      ++A+ LF  M      P+ VTF+A+L AC+  G +D G
Sbjct: 328 WNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLG 379


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/707 (34%), Positives = 394/707 (55%), Gaps = 92/707 (13%)

Query: 20  VRLGLVP-KMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQ 78
           V L L+P K   ++   ++ P +   +++E+ C +I +   IH+HLI T L+  P+++  
Sbjct: 3   VTLPLLPAKTPTAKTSISLFPENPKTLILEQ-CKTIRDLNEIHAHLIKTRLLLKPKVAEN 61

Query: 79  VFE--FLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEV------------- 123
           + E   ++    + YA  I RQ DEP+   +N +I    +   P E              
Sbjct: 62  LLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQ 121

Query: 124 -----FAIYLYLVTRTVLLNK-----------------------------CGKLKEVCQL 149
                F   L + +R   L++                             CG+++   ++
Sbjct: 122 PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRV 181

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FD++  R+V +WN+M + YT  G + E + L  +M    +  DEVT+VS+++A  +L DL
Sbjct: 182 FDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADL 241

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
           E+G+ ++ ++EE  +K + +L+  LVDMY KCG++  A++L    ++D  DVV W+ ++S
Sbjct: 242 ELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFD--QMDRRDVVAWSAMIS 299

Query: 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY 329
           GY +++   EA  LF EM + N+    + +  +L+        SCA +GAL  G WVH +
Sbjct: 300 GYSQASRCREALDLFHEMQKANIDPNEITMVSILS--------SCAVLGALETGKWVHFF 351

Query: 330 IKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           IKK ++ +                ++E + ++F ++  KNV  WT +I   A  G  +KA
Sbjct: 352 IKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKA 411

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434
           ++ F  M E   +P+ VTFI +LSACSH GLVDEG D     SR + I+P+++HYGCMVD
Sbjct: 412 LEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVD 471

Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
           +LGRAG +EE+  FI +MPI P+  IW +LL +C+ H+NV++ E + K L   +P + G 
Sbjct: 472 ILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGD 531

Query: 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEI 554
           ++LL+NIYA  GR +D  ++R ++++ G+KK  G SLIE  G +H+F + D  +  SEEI
Sbjct: 532 YILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEI 591

Query: 555 YLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRI 598
           Y  + ++   ++  G                +E+S+  H E+LA+AFGLI +   TTIRI
Sbjct: 592 YNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRI 651

Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             NLR+C DCH+  K+ S+V+NREIV+RD  RFH F+ G CSC DYW
Sbjct: 652 TKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/701 (34%), Positives = 374/701 (53%), Gaps = 107/701 (15%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGDLGYAQQIIRQGDEPEIKI 106
           ++C S+ + ++IHS  I T L+ +P +  Q+  F      GD+ YA+ +      P   +
Sbjct: 27  KTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFV 86

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLN-----------------KCGK------- 142
           WN++I+     G P    ++Y  ++ R V+ +                 KCG+       
Sbjct: 87  WNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIV 146

Query: 143 -----------------------LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                                  +     +FD+    DV++WN MIS Y     + E + 
Sbjct: 147 KLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMK 206

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  +M    V P  +T+VS++SA +KL+DL +GK +H ++++  ++    L N L+DMY 
Sbjct: 207 LFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYA 266

Query: 240 KCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            CG +  A   LG ++ +   DV+ WT +V+G+    +   AR  FD+M ER+ +SWT M
Sbjct: 267 ACGDMDTA---LGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAM 323

Query: 299 ISGMLN--------------QDAEFK---------YKSCASIGALYHGIWVHVYIKKNQI 335
           I G L               Q A  K           +CA +GAL  G W+  YI KN+I
Sbjct: 324 IDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEI 383

Query: 336 SID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
            ID               N+E A  +F+ +  ++   WT+VI   A+ G+ ++A+D+F +
Sbjct: 384 KIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQ 443

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M +    PD+VT I +L AC+H G+VD+G  F ++ +  + I+P + HYGCMVDLLGRAG
Sbjct: 444 MLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAG 503

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
           HL+E+   I +MP+ P+  +W SLL ACR H++ ++AE A + + E +P N   +VLL N
Sbjct: 504 HLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCN 563

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           IYA   R + +  +R  + D G+KK  G SLIE  G VH+F +GD  +P S+EIY  L+E
Sbjct: 564 IYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDE 623

Query: 561 IEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRI 604
           + + L+  G                +E+++ +H E+LA+AFGLIS+    TIRIV NLR+
Sbjct: 624 MSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRM 683

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           C DCH   K+ S+VYNRE+++RD  RFH F+ G CSC+DYW
Sbjct: 684 CVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/711 (35%), Positives = 384/711 (54%), Gaps = 108/711 (15%)

Query: 41  SLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGD--LGYAQQIIRQ 98
           S +++     C++  + ++IH+H++ T+   DP  ++++      +    L YA+ +  Q
Sbjct: 72  STNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQ 131

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV----------TRTVLLNKCGKLKEVC- 147
             +P +  WN++I     +  P + F I+L+++          T   L     +LK +  
Sbjct: 132 IPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHL 191

Query: 148 -------------------------------------QLFDKLPNRDVISWNTMISCYTS 170
                                                ++F  +P +DV+SWN MI+ +  
Sbjct: 192 GSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFAL 251

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
            G+  + L L  +M  + V P+ +TMVS++SA  K  DLE G+ +  ++E +       L
Sbjct: 252 GGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLIL 311

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
            N ++DMY KCG I +A+ L  +  + E D+V WTT++ G+ K    DEA  +FD M  +
Sbjct: 312 NNAMLDMYVKCGCINDAKDLFNK--MSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHK 369

Query: 291 NLISWTLMISG-----------------MLNQDAEFKYKS-----CAS--IGALYHGIWV 326
              +W  +IS                   L++DA+    +     CAS  +GA+  G W+
Sbjct: 370 WTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWI 429

Query: 327 HVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           HVYIKK+ I+++               N+  A ++F  +  K+VY+W+++I A AM G  
Sbjct: 430 HVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQG 489

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
           + A+DLF  M E   KP+ VTF  +L AC+H GLV+EG     +   +Y I P++QHY C
Sbjct: 490 KAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVC 549

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           +VD+ GRAG LE++A+FI  MPIPP  ++W +LL AC  H NV+LAE A+++L E +P N
Sbjct: 550 VVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCN 609

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
            GA VLL+NIYAKAG  + +S +R  +RD  +KK+   S I+  G VH+F  GD  +P S
Sbjct: 610 HGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFS 669

Query: 552 EEIYLMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKT 594
           ++IY  L+EI    +  G                L E SL  H E+LA+AFGLIST+   
Sbjct: 670 QKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQ 729

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            IRIV N+RICGDCH+F K+ SQ+Y+R+I++RD  RFH F+GG+CSC DYW
Sbjct: 730 PIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 359/672 (53%), Gaps = 87/672 (12%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGDLGYAQQIIRQGDEPEIKIWN 108
           C+++ + ++IH+ ++ T L  DP  ++++  F     +G L YA+ +  Q   P     N
Sbjct: 50  CTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCN 109

Query: 109 SIIENQLINGYPQEVFAIYLYLV---------TRTVLLNKCGKLKEVCQL---------- 149
           SII        P++    Y  ++         T   L   CG L E  QL          
Sbjct: 110 SIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFA 169

Query: 150 -------------------------FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
                                    FDK+ N+ V+SW TMI  Y    +  E + L  +M
Sbjct: 170 SDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRM 229

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
               V P+E+T+V++++A  + RDLE  K +H +++E+ +     L + L+D+Y KCG  
Sbjct: 230 EIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCY 289

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
             A+ L  +  + E ++  W  +++G+V+ ++ +EA  LF+EM    +    + ++ +L 
Sbjct: 290 PLARDLFNK--MPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLL- 346

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSE 349
                   +C  +GAL  G W+HVYI+K +I +D               +IE A  +F E
Sbjct: 347 -------IACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQE 399

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + EK+V  WT++I   AM G   KA++LF EM+ +  KPD +TF+ +L+ACSH GLV+EG
Sbjct: 400 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 459

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
             + +     Y I+P ++HYGCMVD+LGRAG + E+ + I +MP+ PD  +   LL ACR
Sbjct: 460 IAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACR 519

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            H N+ +AE A + L E DP N G +VLL+NIY+     +   ++R  + +  +KK  G 
Sbjct: 520 IHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGC 579

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETS 574
           S IE GG VH+F  GD+ +P S EIY  L+++   L+  G                +E  
Sbjct: 580 SAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENE 639

Query: 575 LQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
           L  H E+LA+AFGL+ST+  T IR+V NLR+C DCHS MK  S+VYNREI++RD  RFH 
Sbjct: 640 LSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHH 699

Query: 634 FQGGQCSCRDYW 645
           F  G CSCRD+W
Sbjct: 700 FTKGSCSCRDFW 711


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/680 (33%), Positives = 373/680 (54%), Gaps = 90/680 (13%)

Query: 46  MVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFE--FLVFTGDLGYAQQIIRQGDEPE 103
           ++ + C +  + +++H+HL+ T  + DP I+  V E   L+    + YA  I    D+PE
Sbjct: 26  LILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPE 85

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNK------------------------ 139
              +N +I        P     ++  +  ++V  +K                        
Sbjct: 86  SSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHA 145

Query: 140 -----------------------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
                                  CG++     +FD +P R +++WN+M+S YT  G++ E
Sbjct: 146 LILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDE 205

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            + L  K+    +  D+VTM+S++ A  +L +LE+G+ +  ++    ++ + +L   L+D
Sbjct: 206 VVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLID 265

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY KCG++  A+KL    E+D+ DVV W+ ++SGY +++   EA  LF EM + N+    
Sbjct: 266 MYAKCGQVDTARKLFD--EMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNE 323

Query: 297 LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIE 341
           + +  +L         SCA +GA   G WVH YIKK ++ +                 I+
Sbjct: 324 VTMVSVL--------YSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYID 375

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            + ++F E+S KNV+ WT++I   A  G  + A++ F  M E   KP+ VTFI +LSACS
Sbjct: 376 RSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACS 435

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H  LVD+G    +   R ++I+P+++HYGCMVD+LGRAG LEE+  FI +MP PP+  +W
Sbjct: 436 HACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVW 495

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            +LL +CR H+N+++AE + +H+T  +P + G ++LL+N YA  GR++D  R+R  +++ 
Sbjct: 496 RTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEK 555

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------- 570
            +KK  G SLIE  G VH+F S D  + HS+EI+  L+++   +++ G            
Sbjct: 556 EIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEA 615

Query: 571 ----QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
               +ETS+  H E+LA+A+GLI TS +TTIRI  NLR+C DCH+  K  SQV+ R I++
Sbjct: 616 EEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIV 675

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F+ G CSC DYW
Sbjct: 676 RDRNRFHHFKDGLCSCNDYW 695


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/646 (37%), Positives = 355/646 (54%), Gaps = 67/646 (10%)

Query: 34  FANVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           ++ V P S     + +SC+   S  E ++IH+H++    + D  I T +      +G++ 
Sbjct: 122 YSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMN 181

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLF 150
            AQ +  Q +       ++I    LI GY     A++             G +    QLF
Sbjct: 182 NAQLVFDQSN-----FRDAISFTALIAGY-----ALW-------------GYMDRARQLF 218

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           D++P +DV+SWN MI+ Y  MG  +E L L   M    V P+E T+VS++SA  +   L+
Sbjct: 219 DEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALD 278

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +G ++  ++E+  +  +  L+N L+DMY KCG +  A++L    ++ E DV+ W  ++ G
Sbjct: 279 LGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFD--DMLERDVISWNVMIGG 336

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
           Y       EA  LF EM+   +    +    +L         SCA +GA+  G W+H YI
Sbjct: 337 YTHMCSYKEALALFREMLASGVEPTEITFLSIL--------PSCAHLGAIDLGKWIHAYI 388

Query: 331 KKN---------QISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            KN            ID      NI  A  +F  +  K++  W ++I   AM G A KA 
Sbjct: 389 NKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAF 448

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           +LF +M   G +P+++TF+ +LSAC H GLVD G  F S   + Y I PK QHYGCM+DL
Sbjct: 449 ELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDL 508

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           LGRAG  EE+ + + +M + PD +IW SLL ACR H  V+L E   + L E +P N GA+
Sbjct: 509 LGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAY 568

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           VLL+NIYA AG+ DD++RIR +L D G+KK  G + IE    VH+F  GD  +P SE+IY
Sbjct: 569 VLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIY 628

Query: 556 LMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIV 599
            ML E++  L+  G                +E +L  H E+LA+AFGLIST   T IRI+
Sbjct: 629 RMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRII 688

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C +CHS  K+ S+++NREI+ RD  RFH F+ G CSC DYW
Sbjct: 689 KNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 167/387 (43%), Gaps = 42/387 (10%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           +++ G +     LF+ +   ++  WN+MI   +        L    +M   GV P+  T 
Sbjct: 73  VSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTF 132

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
             L+ +  KL     GK +H  + +        +   L++MY + G++  AQ +  +   
Sbjct: 133 PFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNF 192

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-----------MLNQ 305
              D + +T L++GY      D AR+LFDEM  ++++SW  MI+G           +L +
Sbjct: 193 R--DAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFE 250

Query: 306 DAEFK------------YKSCASIGALYHGIWVHVYIKKNQIS---------ID------ 338
           D                  +CA   AL  G  +  +I+   +          ID      
Sbjct: 251 DMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCG 310

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           +++ A +LF ++ E++V  W  +I  Y      ++A+ LF EM  +G +P ++TF+++L 
Sbjct: 311 DLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILP 370

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           +C+H G +D G    +  ++ +N          ++DL  + G++  +      M I    
Sbjct: 371 SCAHLGAIDLGKWIHAYINKNFNSVSTSLSTS-LIDLYAKCGNIVAARQVFDGMKIKSLA 429

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLT 485
           S W++++     H     A   F  ++
Sbjct: 430 S-WNAMICGLAMHGQADKAFELFSKMS 455


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/710 (34%), Positives = 380/710 (53%), Gaps = 110/710 (15%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGDLGYAQQII 96
           P+SL    +E+ C S+ + ++IHSH I   L  DP    +V  F     +G + YA+Q+ 
Sbjct: 10  PISL----LEK-CKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVF 64

Query: 97  RQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV------------------TRT---- 134
               +P + IWN++I+      +PQ   ++YL ++                  TR     
Sbjct: 65  DAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQ 124

Query: 135 ---VLLNKCGK---------------LKEVCQL-------FDKLPNRDVISWNTMISCYT 169
              VLLN   K               +  +C+L       FD     +V++WN M+S Y 
Sbjct: 125 YGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYN 184

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
            +  +++   L  +M   GVSP+ VT+V ++SA +KL+DLE GK+++ ++    ++ +  
Sbjct: 185 RVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLI 244

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           L N L+DM+  CG++ EAQ +     +   DV+ WT++V+G+    + D AR+ FD++ E
Sbjct: 245 LENVLIDMFAACGEMDEAQSVFD--NMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPE 302

Query: 290 RNLISWTLMISGMLNQDA-------------------EFKYKS----CASIGALYHGIWV 326
           R+ +SWT MI G L  +                    EF   S    CA +GAL  G WV
Sbjct: 303 RDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWV 362

Query: 327 HVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
             YI KN I  D               N+  A  +F E+  K+ + WT++I   A+ GH 
Sbjct: 363 KTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHG 422

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
           ++A+ +F  M E    PD++T+I +L AC+H G+V++G  F    +  + IKP + HYGC
Sbjct: 423 EEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGC 482

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           MVDLLGRAG LEE+   I +MP+ P+  +W SLL ACR H+NV+LAE A K + E +P N
Sbjct: 483 MVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPEN 542

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
              +VLL NIYA   R +++ ++R  + + G+KK  G SL+E  G V++F +GD  +P S
Sbjct: 543 GAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQS 602

Query: 552 EEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTT 595
           +EIY  L  +   L + G                +ET+L +H E+LA+A+ LIS+    T
Sbjct: 603 KEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGIT 662

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IRIV NLR+C DCH   K+ S+ YNRE+++RD  RFH F+ G CSC ++W
Sbjct: 663 IRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/719 (32%), Positives = 373/719 (51%), Gaps = 107/719 (14%)

Query: 31  SRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGD 88
           S    +  P +  +I +  +C S+D+ +++H   I   L  +P +  +V  F      GD
Sbjct: 8   SSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD 67

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNK--------- 139
             YA+++  +  EP + IWN++I       +PQ   ++YL ++ R V  ++         
Sbjct: 68  FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 127

Query: 140 --------------------------------------CGKLKEVCQLFDKLPNRDVISW 161
                                                 CG+L     +FD  P  DVI+W
Sbjct: 128 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 187

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N +IS Y  +G + E   L   M  + V P  VT+V ++SA +KL+DL  GK +H +++ 
Sbjct: 188 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 247

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEA 280
             ++ +  L N ++DMY  CG++  A   LG +  ++  D++ WTT+VSG+    E D A
Sbjct: 248 CKVESNLVLENAMIDMYADCGEMDSA---LGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 304

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDA-------------------EFKYKS----CASI 317
           R  FD+M E++ +SWT MI G +  +                    EF   S    CA +
Sbjct: 305 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 364

Query: 318 GALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVI 362
           GAL  G W+  YI +N+I  D               +++ A  +F E+S+++ + WT++I
Sbjct: 365 GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMI 424

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
              A+ GH +KA+D+F  M +    PD++T+I +LSAC+H GLVD+G  +  + +  + I
Sbjct: 425 VGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGI 484

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +P + HYGC+VDLL RAG L+E+   I +MPI  +  +W +LL  CR ++   +AE   K
Sbjct: 485 EPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVK 544

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            + E +P N   +VLL NIYA   R +D+  +R  + D G+KK  G SLIE  G VH+F 
Sbjct: 545 QILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFV 604

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFG 586
           +GD  +P ++ I   L+++   L+  G                 + +  +H E+LA+AFG
Sbjct: 605 AGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFG 664

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LI++    TIRI  NLR+C DCH+  K+ S+VYNRE+++RD  RFH F+ G CSC+DYW
Sbjct: 665 LINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/719 (32%), Positives = 373/719 (51%), Gaps = 107/719 (14%)

Query: 31  SRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGD 88
           S    +  P +  +I +  +C S+D+ +++H   I   L  +P +  +V  F      GD
Sbjct: 29  SSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD 88

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNK--------- 139
             YA+++  +  EP + IWN++I       +PQ   ++YL ++ R V  ++         
Sbjct: 89  FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 148

Query: 140 --------------------------------------CGKLKEVCQLFDKLPNRDVISW 161
                                                 CG+L     +FD  P  DVI+W
Sbjct: 149 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 208

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N +IS Y  +G + E   L   M  + V P  VT+V ++SA +KL+DL  GK +H +++ 
Sbjct: 209 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 268

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEA 280
             ++ +  L N ++DMY  CG++  A   LG +  ++  D++ WTT+VSG+    E D A
Sbjct: 269 CKVESNLVLENAMIDMYADCGEMDSA---LGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 325

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDA-------------------EFKYKS----CASI 317
           R  FD+M E++ +SWT MI G +  +                    EF   S    CA +
Sbjct: 326 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 385

Query: 318 GALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVI 362
           GAL  G W+  YI +N+I  D               +++ A  +F E+S+++ + WT++I
Sbjct: 386 GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMI 445

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
              A+ GH +KA+D+F  M +    PD++T+I +LSAC+H GLVD+G  +  + +  + I
Sbjct: 446 VGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGI 505

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +P + HYGC+VDLL RAG L+E+   I +MPI  +  +W +LL  CR ++   +AE   K
Sbjct: 506 EPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVK 565

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            + E +P N   +VLL NIYA   R +D+  +R  + D G+KK  G SLIE  G VH+F 
Sbjct: 566 QILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFV 625

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFG 586
           +GD  +P ++ I   L+++   L+  G                 + +  +H E+LA+AFG
Sbjct: 626 AGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFG 685

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LI++    TIRI  NLR+C DCH+  K+ S+VYNRE+++RD  RFH F+ G CSC+DYW
Sbjct: 686 LINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/662 (36%), Positives = 365/662 (55%), Gaps = 67/662 (10%)

Query: 49  RSCS-SIDEFER--IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           +SCS  + EF+   I  H++      D  I   +       G+L  A+++       ++ 
Sbjct: 134 QSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMV 193

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTV--------LLNKCGKLKEVCQLFDKLPNRD 157
            WNS++   ++ G  +E   +Y  +  R V        L  K G ++E C+LF+++  +D
Sbjct: 194 SWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKD 253

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
           ++SW+ +ISCY    MY E L L  +M A G+  DEV ++S++SA ++L  +  GK +H 
Sbjct: 254 LVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHG 313

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
            + +  ++   +L N L+ MY  C ++  AQKL    E   +D + W +++SGYVK  E 
Sbjct: 314 LVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFS--ESCCLDQISWNSMISGYVKCGEI 371

Query: 278 DEARRLFDEMVERNLISWTLMISGMLNQD---------AEFKYK--------------SC 314
           ++AR LFD M +++ +SW+ MISG   QD          E + +              +C
Sbjct: 372 EKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISAC 431

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWT 359
             + AL  G W+H YI+KN + I+ I               E A ++F  + EK V  W 
Sbjct: 432 THLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWN 491

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I   AM G   K++  F EM+E G  P+++TF+A+L AC H GLVDEG+   +   + 
Sbjct: 492 ALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQE 551

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           + I P ++HYGCMVDLLGRAG L+E+   I SMP+ PDVS W +LL AC+ + + +  E 
Sbjct: 552 HKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGER 611

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
             + L E  P +DG +VLL+NIYA  G   D+  +R  +R  G+ K  G S+IE  G VH
Sbjct: 612 IGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVH 671

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAV 583
           +F +GD  +P +E I  ML+E+   L+ +G                +ET+L +H E+LA+
Sbjct: 672 EFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAI 731

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGLI+    T IRIV NLRIC DCH+  K+ S+ +NREIV+RD  RFH F+ G CSC D
Sbjct: 732 AFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMD 791

Query: 644 YW 645
           YW
Sbjct: 792 YW 793



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 84/191 (43%), Gaps = 19/191 (9%)

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           NI  +Y +FS I   N ++  +++  Y       KAI ++  M E+    D  T+  L  
Sbjct: 75  NINQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQ 134

Query: 399 ACS------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           +CS       G  + +    +   S VY     +Q+   ++++    G+L ++       
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVY-----IQN--TLINMYAVCGNLSDARKVFDGS 187

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
            +   VS W+S+L       NV+ A+  +  + E + +   + ++L   + K G +++  
Sbjct: 188 SVLDMVS-WNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVL---FGKKGNVEEAC 243

Query: 513 RI--RMKLRDM 521
           ++   MK +D+
Sbjct: 244 KLFNEMKQKDL 254


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 373/706 (52%), Gaps = 118/706 (16%)

Query: 50  SCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
           +CS I    E  ++H  ++   L  D  +S  +  F    G +   +++     E  +  
Sbjct: 139 ACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVS 198

Query: 107 WNSIIENQLINGYP-----QEVFAIYLYL---------VTRTVLLNKCGKLKE------V 146
           W S     LINGY      +E  +++  +         VT   +++ C KLK+      V
Sbjct: 199 WTS-----LINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKV 253

Query: 147 C--------------------------------QLFDKLPNRDVISWNTMISCYTSMGMY 174
           C                                Q+FD+  N++++ +NT++S Y      
Sbjct: 254 CSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWA 313

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
            + L +L +M  +G  PD+VTM+S I+A  +L DL +GK+ H ++  + ++   ++ N +
Sbjct: 314 SDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAI 373

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           +DMY KCGK   A K+     +    VV W +L++G V+  + + A R+FDEM+ER+L+S
Sbjct: 374 IDMYMKCGKREAACKVF--EHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVS 431

Query: 295 WTLMISGMLNQDAEFK------------------------YKSCASIGALYHGIWVHVYI 330
           W  MI G L Q + F+                          +C  +GAL    WV  YI
Sbjct: 432 WNTMI-GALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYI 490

Query: 331 KKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           +KN I +D               +   A  +F  + +++V  WT+ I   AM G+ + AI
Sbjct: 491 EKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAI 550

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           +LF EM E   KPD V F+ALL+ACSHGG VD+G        + + I+P + HYGCMVDL
Sbjct: 551 ELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDL 610

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           LGRAG LEE+ + I SMPI P+  +W SLL ACR H+NV+LA +A + LT+  P   G H
Sbjct: 611 LGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIH 670

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           VLL+NIYA AG+  D++R+R+++++ G++K  G S IE  G +H+FTSGD  +  +  I 
Sbjct: 671 VLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIG 730

Query: 556 LMLNEIEMTLQQQGLQETSL----------------QHRERLAVAFGLISTSEKTTIRIV 599
           LML EI   L + G    +                 +H E+LA+A+GLI+T +   IR+V
Sbjct: 731 LMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVV 790

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C DCHSF K+ S++YNREI +RDN R+H F+ G CSCRDYW
Sbjct: 791 KNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 162/342 (47%), Gaps = 25/342 (7%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           +N +I  Y S G+  + + L  +M   G+ PD+ T   L+SA +K+  L  G  +H  + 
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 221 ESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           +  M + G +   N L+  Y +CGK+   +KL     + E +VV WT+L++GY   +   
Sbjct: 158 K--MGLEGDIFVSNSLIHFYAECGKVDLGRKLFDG--MLERNVVSWTSLINGYSGRDLSK 213

Query: 279 EARRLFDEM----VERNLISWTLMISGMLN-QDAEFKYKSCASIGAL---YHGIWVHVYI 330
           EA  LF +M    VE N ++   +IS     +D E   K C+ I  L      I V+  +
Sbjct: 214 EAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALV 273

Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
               +   +I  A  +F E + KN+ ++ ++++ Y     A   + +  EM + G +PD+
Sbjct: 274 DM-YMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDK 332

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESA 446
           VT ++ ++AC+  G +  G     K S  Y ++  ++ +      ++D+  + G  E + 
Sbjct: 333 VTMLSTIAACAQLGDLSVG-----KSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAAC 387

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
                MP    V  W+SL+       +++LA   F  + E D
Sbjct: 388 KVFEHMP-NKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERD 428



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 27/172 (15%)

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+   G  + +   + ++  L+ GY  +   D+A  L+ +M          ++ G++   
Sbjct: 81  ARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQM----------LVMGIVPDK 130

Query: 307 AEFKY--KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSE 349
             F +   +C+ I AL  G+ VH  + K  +  D                ++L   LF  
Sbjct: 131 YTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDG 190

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           + E+NV  WTS+I  Y+    +++A+ LF +M E G +P+ VT + ++SAC+
Sbjct: 191 MLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACA 242



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           +++++  +I  YA AG   +AI L+++M   G  PD+ TF  LLSACS    + EG
Sbjct: 94  SLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEG 149


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/648 (36%), Positives = 358/648 (55%), Gaps = 69/648 (10%)

Query: 34  FANVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           +  V P S     + +SC+   +  E +++H+H +   L  +P + T V       G++ 
Sbjct: 124 YYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMD 183

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLF 150
           +A+ +    D+  ++  +++    LI GY  +                  G L +  +LF
Sbjct: 184 FARLVF---DKSSLR--DAVSFTALITGYVSQ------------------GCLDDARRLF 220

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           D++P +DV+SWN MIS Y   G + E +    +M    V P++ TMV ++SA    R  E
Sbjct: 221 DEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGE 280

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +GK +  ++ ++    +  L N L+DMY KCG+   A++L     I+E DV+ W T++ G
Sbjct: 281 LGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDG--IEEKDVISWNTMIGG 338

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
           Y   +  +EA  LF+ M+  N+    +   G+L+        +CA +GAL  G WVH YI
Sbjct: 339 YSYLSLYEEALALFEVMLRSNVKPNDVTFLGILH--------ACACLGALDLGKWVHAYI 390

Query: 331 KKNQISIDN----------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
            KN  +  N                IE A  +F  +  +N+  W ++++ +AM GHA++A
Sbjct: 391 DKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERA 450

Query: 375 IDLFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           + LF EM   G  +PD +TF+ +LSAC+  GLVD G+ +     + Y I PK+QHYGCM+
Sbjct: 451 LALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMI 510

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLL RA   EE+   + +M + PD +IW SLL AC+ H  V+  E+  + L + +P N G
Sbjct: 511 DLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAG 570

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
           A VLL+NIYA AGR DD++RIR +L D G+KK  G + IE  G VH+F  GD F+P    
Sbjct: 571 AFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNN 630

Query: 554 IYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIR 597
           IY MLNE++  L++ G                +E +L QH E+LA++FGLI T   TTIR
Sbjct: 631 IYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIR 690

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IV NLR+CG+CHS  K+ S+++NREI+ RD  RFH F+ G CSC D W
Sbjct: 691 IVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 121/546 (22%), Positives = 218/546 (39%), Gaps = 107/546 (19%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQGDEPEIKIWN 108
           C +I+ F++IHS +I T L     + +++  F   +  GDL YA  +             
Sbjct: 38  CKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFE----------- 86

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
              ENQ                                     +    +V  WN++I  Y
Sbjct: 87  ---ENQ-------------------------------------QHHKHNVFIWNSLIRGY 106

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           +        L L S+M   GV P+  T   L  + TK +    GK LH    +  +  + 
Sbjct: 107 SLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNP 166

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            +   ++ MY   G++  A+ +  +  +   D V +T L++GYV     D+ARRLFDE+ 
Sbjct: 167 HVHTSVIHMYASVGEMDFARLVFDKSSLR--DAVSFTALITGYVSQGCLDDARRLFDEIP 224

Query: 289 ERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGALYHGI 324
            ++++SW  MISG + Q   F+                          +C    +   G 
Sbjct: 225 VKDVVSWNAMISGYV-QSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGK 283

Query: 325 WVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
           W+  +++ N            ID        ++A +LF  I EK+V  W ++I  Y+   
Sbjct: 284 WIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLS 343

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKM 426
             ++A+ LF  M  +  KP+ VTF+ +L AC+  G +D G   + ++ K  R        
Sbjct: 344 LYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRN---SSNA 400

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
             +  ++D+  + G +E +     SM    +++ W+++L     H + + A   F  +  
Sbjct: 401 SLWTSLIDMYAKCGCIEAAERVFRSMH-SRNLASWNAMLSGFAMHGHAERALALFSEMVN 459

Query: 487 TDPL--NDGAHVLLANIYAKAGRLD-DMSRIRMKLRDMGLKKQLGY--SLIEQGGFVHKF 541
                 +D   V + +   +AG +D      R  ++D G+  +L +   +I+      KF
Sbjct: 460 KGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKF 519

Query: 542 TSGDIF 547
              +I 
Sbjct: 520 EEAEIL 525


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/695 (34%), Positives = 372/695 (53%), Gaps = 92/695 (13%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLG 90
           K ++ C   + V  ++  C+SI + ++ H+ L+ T+L+ +P  S+++  FL  +  GDL 
Sbjct: 3   KPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLN 62

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV--------------- 135
           YA+++  Q   P+  I N++I     +  P E  ++Y ++V R V               
Sbjct: 63  YARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 136 --------------------------------LLNKCGKLKEVCQLFDKLPNRDVISWNT 163
                                             + CG     C +FD+   RDV++WN 
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNI 182

Query: 164 MISCYTSMGMYREGLGLLSKMGA-EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
           MI+ + + G+  +   LL +M   + + PDEVTMVSL+ A  +L +LE GK LH + +E 
Sbjct: 183 MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKEL 242

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            +  +  + N ++DMY KC  I  AQ++  R  I E DV+ WT+++SG  KS    EA  
Sbjct: 243 GLDENLRVNNAILDMYCKCDDIESAQEVFNR--IREKDVLSWTSMLSGLAKSGYFQEALA 300

Query: 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---- 338
           LF +M    +    + + G+L+        +CA  GAL  G ++H+ I K +I+ D    
Sbjct: 301 LFQKMQLNKIELDEITLVGVLS--------ACAQTGALDQGKYIHLLIDKFEINCDLVLE 352

Query: 339 -----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
                      +I+LA  +F  +  +NV+ W ++I   AM GH + AI LF +ME     
Sbjct: 353 TALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLM 412

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD VTFIALL ACSH GLVDEG          + I+P+M+HYGC+VDLL RA  ++++  
Sbjct: 413 PDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALA 472

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
           FI +MPI  +  +W++LL ACR   +  LAE   + + E +P + G +V+L+N+YA   +
Sbjct: 473 FIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQ 532

Query: 508 LDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE----- 562
            D   ++R ++++ G++K  G S IE  G +H+F +GD  +  +E+IY M+ E+      
Sbjct: 533 WDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNL 592

Query: 563 ------------MTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
                         ++++  + +   H E+LA+A GLIST   + IRIV NLR+C DCHS
Sbjct: 593 DGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHS 652

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           F+KVTS+VYNREIV RD  RFH F+ G CSC D+W
Sbjct: 653 FLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/665 (33%), Positives = 361/665 (54%), Gaps = 89/665 (13%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           +IH+ L+ + L+    + T+        G++GYA+++  +  EP + +WN+II     + 
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 119 YPQEVFAIYLYLVTRTV------------------------------------------- 135
           +  +   +Y  +    V                                           
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQN 208

Query: 136 ----LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
               L  KCG++++   +F+ L +R+++SW +MIS Y   G+  E L +  +M    V P
Sbjct: 209 GLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKP 268

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D + +VS++ A T + DLE GK++H  + +  ++    LL  L  MY KCG++  A+   
Sbjct: 269 DWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFF 328

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
            + EI   +V++W  ++SGY K+   +EA  LF EM+ +N+ + ++ +   +        
Sbjct: 329 DQMEIP--NVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAI-------- 378

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVY 356
            +CA +G+L    W+  YI K +   D               +++LA ++F    +K+V 
Sbjct: 379 LACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVV 438

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
           +W+++I  Y + G  Q AIDLF  M++ G  P+ VTF+ LL+AC+H GLV+EG++ L   
Sbjct: 439 VWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWE-LFHS 497

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            + Y I+ + QHY C+VDLLGR+GHL E+ +FIT+MPI P VS+W +LL AC+ +++V L
Sbjct: 498 MKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTL 557

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
            E+A + L   DP N G +V L+N+YA +   D ++++R+ +R+ GL K LGYSLIE  G
Sbjct: 558 GEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEING 617

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRER 580
            +  F  GD  +P  +EI+  L  +E  L++ G                 +ET   H ER
Sbjct: 618 KLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSER 677

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+A+GLIST+  TT+RI  NLR C +CHS  K+ S++ NREIV+RD  RFH F+ G CS
Sbjct: 678 LAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCS 737

Query: 641 CRDYW 645
           CRDYW
Sbjct: 738 CRDYW 742



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 112/285 (39%), Gaps = 51/285 (17%)

Query: 36  NVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           NV P  + ++ V R+ + +++ E+   IH  ++   L  +P +   +       G +  A
Sbjct: 265 NVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVA 324

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV----------------- 135
           +    Q + P + +WN++I     NGY  E   ++  ++++ +                 
Sbjct: 325 RSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQV 384

Query: 136 ------------------------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
                                         +  KCG +    ++FD+  ++DV+ W+ MI
Sbjct: 385 GSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMI 444

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
             Y   G  ++ + L   M   GV P++VT V L++A      +E G  L   ++   ++
Sbjct: 445 VGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIE 504

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
                   +VD+  + G + EA   +    I E  V +W  L+  
Sbjct: 505 ARHQHYACVVDLLGRSGHLNEAYDFITTMPI-EPGVSVWGALLGA 548


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/634 (36%), Positives = 351/634 (55%), Gaps = 70/634 (11%)

Query: 49  RSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           +SC+ I    E +++H+H++   L  +  + T +       G+L  A+ +    D+  ++
Sbjct: 136 KSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVF---DKSSMR 192

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
             +++    LI GY  + F                  L E  +LFD++P RDV+SWN MI
Sbjct: 193 --DAVSFTALITGYASKGF------------------LDEARELFDEIPVRDVVSWNAMI 232

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL-RDLEMGKNLHLFLEESTM 224
           S Y   G   E +    +M    V+P+  TM+S++SA  +    L++G  +  ++E+  +
Sbjct: 233 SGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGL 292

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
             +  L+N L+DMY KCG + EA  L  +  I + +VV W  ++ GY   +   EA  LF
Sbjct: 293 GSNIRLVNGLIDMYVKCGDLEEASNLFEK--IQDKNVVSWNVMIGGYTHMSCYKEALGLF 350

Query: 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN----- 339
             M++ N+    +    +L         +CA++GAL  G WVH Y+ KN  S+ N     
Sbjct: 351 RRMMQSNIDPNDVTFLSIL--------PACANLGALDLGKWVHAYVDKNMKSMKNTVALW 402

Query: 340 ------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
                       + +A  +F  ++ K++  W ++I+ +AM GH   A+ LF  M   G  
Sbjct: 403 TSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFV 462

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD +TF+ +L+AC H GL+  G  + S   + Y + PK+ HYGCM+DL GRAG  +E+  
Sbjct: 463 PDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAET 522

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
            + +M + PD +IW SLL ACR H+ ++LAE   KHL E +P N  A+VLL+NIYA AGR
Sbjct: 523 LVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGR 582

Query: 508 LDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567
            +D+++IR +L D  +KK  G S IE    VH+F  GD  +P S EIY ML+EI+M L++
Sbjct: 583 WEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEK 642

Query: 568 QG-LQETS---------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
            G + +TS                 H E+LA+AFGLIST   TTIRI+ NLR+CG+CHS 
Sbjct: 643 AGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSA 702

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            K+ S+++NREI+ RD  RFH F+ G CSC+DYW
Sbjct: 703 TKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 174/387 (44%), Gaps = 47/387 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     LF  + N + + WN MI   +S       L     M + G  P+E T  S+ 
Sbjct: 76  GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIF 135

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            + TK+R    GK +H  + +  ++ +  +   L++MY + G++  A+ +  +  +   D
Sbjct: 136 KSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMR--D 193

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD------AEFK---- 310
            V +T L++GY      DEAR LFDE+  R+++SW  MISG           A F+    
Sbjct: 194 AVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRR 253

Query: 311 -------------YKSCASIG-ALYHGIWVHVYIKKNQIS---------ID------NIE 341
                          +CA  G +L  G WV  +I+   +          ID      ++E
Sbjct: 254 AKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLE 313

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A +LF +I +KNV  W  +I  Y      ++A+ LF  M ++   P+ VTF+++L AC+
Sbjct: 314 EASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACA 373

Query: 402 HGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           + G +D G   + ++ K  +  ++K  +  +  ++D+  + G L  +      M     +
Sbjct: 374 NLGALDLGKWVHAYVDKNMK--SMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNT-KSL 430

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLT 485
           + W++++     H +   A   F  +T
Sbjct: 431 ATWNAMISGFAMHGHTDTALGLFSRMT 457



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 118/293 (40%), Gaps = 67/293 (22%)

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFK-----------------------YKSCAS 316
           A  LF  +   N + W  MI G+ + ++ F                        +KSC  
Sbjct: 81  ALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTK 140

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           I   + G  VH ++ K  +                E N ++ TS+I  YA  G    A  
Sbjct: 141 IRGAHEGKQVHAHVLKLGL----------------EHNAFVHTSLINMYAQNGELVNARL 184

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMV 433
           +F    +  +  D V+F AL++  +  G +DE    +D +  +  V         +  M+
Sbjct: 185 VF----DKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVV--------SWNAMI 232

Query: 434 DLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
               ++G +EE+  F   M    + P+VS   S+L AC    +     +  +   E   L
Sbjct: 233 SGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGL 292

Query: 491 NDGAHVLLAN----IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
             G+++ L N    +Y K G L++ S +  K++D   K  + ++++  GG+ H
Sbjct: 293 --GSNIRLVNGLIDMYVKCGDLEEASNLFEKIQD---KNVVSWNVM-IGGYTH 339


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/676 (34%), Positives = 370/676 (54%), Gaps = 69/676 (10%)

Query: 36  NVCPVSLDVIMVERSCS-SIDEF--ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           NV P +    +V ++C+  + EF  + IH H++      D  +   +       G++  A
Sbjct: 136 NVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDA 195

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT--------VLLNKCGKLK 144
           +++  +    +   WNSI+   +  G  +E   I+  +  R         VLL K G++ 
Sbjct: 196 RKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVM 255

Query: 145 EVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISART 204
           E  +LF+++  +D++SW+ +IS Y   GMY E L +  +M A G+  DEV +VS++SA  
Sbjct: 256 EAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACA 315

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-GRYEIDEVDVVL 263
            L  ++ GK +H  +    ++   +L N L+ MY   G+I +AQKL  G + +D++    
Sbjct: 316 HLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQIS--- 372

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD------AEFK------- 310
           W +++SG +K    ++AR LFD M E++++SW+ +ISG    D      A F        
Sbjct: 373 WNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQI 432

Query: 311 ----------YKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYD 345
                       +C  + AL  G WVH YI+KN + ++ I               E A +
Sbjct: 433 RPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALE 492

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F+ + EK V  W ++I   A+ G  ++++D+F EM+  G  P+++TF+ +L AC H GL
Sbjct: 493 VFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGL 552

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           VDEG    +     + I+P ++HYGCMVDLLGRAG L E+   I SMP+ PDV+ W +LL
Sbjct: 553 VDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 612

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            AC+ H + ++ E   + L E  P +DG HVLL+NI+A  G  +D+  +R  ++  G+ K
Sbjct: 613 GACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVK 672

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
             G SLIE  G VH+F +GD  +P   ++  MLNE+   L+ +G                
Sbjct: 673 TPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEE 732

Query: 571 QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           +ET+L +H E+LA+AFGL++ S  T IRI+ NLRIC DCH+  K+ S+ Y REIV+RD  
Sbjct: 733 KETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRH 792

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSC DYW
Sbjct: 793 RFHYFKEGACSCMDYW 808



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 177/390 (45%), Gaps = 48/390 (12%)

Query: 104 IKIWNSIIENQLINGYPQEVFAI--YLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISW 161
           +K +N I+   ++ G+  + FA    L   T +  +     L    Q+FD++ N +   W
Sbjct: 54  LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIG----LDYSLQIFDRIENSNGFMW 109

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM-GKNLHLFLE 220
           NTM+  Y       + L L   M    V PD  T   ++ A   +R LE  GK +H  + 
Sbjct: 110 NTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA-CAVRLLEFGGKEIHDHVL 168

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           +        + N L++MY  CG + +A+KL     +  +D V W ++++GYVK  + +EA
Sbjct: 169 KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV--LDSVSWNSILAGYVKKGDVEEA 226

Query: 281 RRLFDEMVERNLISWTLMIS--GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID 338
           + +FD+M +RN+++   MI   G + Q  E                              
Sbjct: 227 KLIFDQMPQRNIVASNSMIVLLGKMGQVME------------------------------ 256

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
               A+ LF+E+ EK++  W+++I+ Y   G  ++A+ +F+EM   G + D+V  +++LS
Sbjct: 257 ----AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLS 312

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           AC+H  +V  G        R+  I+  +     ++ +   +G + ++            +
Sbjct: 313 ACAHLSIVKTGKMIHGLVIRM-GIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQI 371

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           S W+S++  C    +V+ A   F  + E D
Sbjct: 372 S-WNSMISGCMKCGSVEKARALFDVMPEKD 400



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 78/170 (45%), Gaps = 24/170 (14%)

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           ++ +  +F  I   N ++W +++ AY  +  A+KA+ L+  M +    PD  T+  ++ A
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 400 CS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           C+           H  ++  G+D     S VY     +Q+   ++++    G++ ++   
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFD-----SDVY-----VQN--TLINMYAVCGNMRDARKL 198

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
               P+   VS W+S+L       +V+ A+  F  + + + +   + ++L
Sbjct: 199 FDESPVLDSVS-WNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVL 247


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/713 (33%), Positives = 367/713 (51%), Gaps = 107/713 (15%)

Query: 37  VCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P       V   C+ I  F    ++H  ++   L  D  I   +  F    G + +  
Sbjct: 127 VTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGH 186

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV---------TRTVLLNKCGKLK 144
           ++     E  +  W S+I        P+E  +++  +V         T   +++ C KL+
Sbjct: 187 KVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLR 246

Query: 145 E------VC--------------------------------QLFDKLPNRDVISWNTMIS 166
           +      VC                                +LFD+  +R+++ +NT++S
Sbjct: 247 DLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILS 306

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            Y   G+ RE L +L +M  +G  PD VTM+S ISA  +L DL  GK  H ++  + ++ 
Sbjct: 307 NYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEG 366

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
             S+ N ++DMY KCGK   A ++     +    VV W +L +G++++ + + A  +F++
Sbjct: 367 WDSIGNVIIDMYMKCGKPEMACRVFDL--MSNKTVVSWNSLTAGFIRNGDVESAWEVFNQ 424

Query: 287 MVERNLISWTLMISGM----LNQDAEFKYK-------------------SCASIGALYHG 323
           + ERN + W  MISG+    L +DA   ++                   +C  +GA    
Sbjct: 425 IPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELA 484

Query: 324 IWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
            WVH YI+KN I  D               + + A  +F++++E++V  WT+ I   AM 
Sbjct: 485 KWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAME 544

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G+ + A  LF +M   G KPD V F+ +L+ACSHGG V++G    S     + I P+++H
Sbjct: 545 GNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEH 603

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           YGCMVDLLGRAG L E+ + I SMP+ P+  +W SLL ACR H+NV++A +A + + E  
Sbjct: 604 YGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELA 663

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           P   G HVLL+NIYA AG+  D++R+R+ LR+ G++K  G S ++  G +H+FTSGD  +
Sbjct: 664 PQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESH 723

Query: 549 PHSEEIYLMLNEIEMTLQQQGL-------------QETSL---QHRERLAVAFGLISTSE 592
           P    I LML E+       G              QE      +H E+LA+AFGLI+T  
Sbjct: 724 PEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGR 783

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              IR+V NLR+C DCHSF K+ S +YNREI++RDN RFH F+ G CSC DYW
Sbjct: 784 SMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 165/341 (48%), Gaps = 21/341 (6%)

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N++I  Y+S G+ RE + L  +M   GV+P+  T   ++S  TK+     G  +H  + +
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
             ++    + N L+  Y +CG +    K+     + E +VV WT+L+ GY + +   EA 
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVF--EGMSERNVVSWTSLICGYARGDRPKEAV 217

Query: 282 RLFDEMVERNL----ISWTLMISGMLN-QDAEFKYKSCASIGAL---YHGIWVHVYIKKN 333
            LF EMVE  +    ++   +IS     +D +   + CA IG L    + + V+  +   
Sbjct: 218 SLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDM- 276

Query: 334 QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
            +    I+ A  LF E  ++N+ L+ ++++ YA  G A++A+ +  EM + G +PD+VT 
Sbjct: 277 YMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTM 336

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFI 449
           ++ +SA +   LVD    F  K    Y I+  ++ +      ++D+  + G  E +    
Sbjct: 337 LSAISASAQ--LVDL---FYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVF 391

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
             M     VS W+SL      + +V+ A   F  + E + +
Sbjct: 392 DLMSNKTVVS-WNSLTAGFIRNGDVESAWEVFNQIPERNAV 431



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 31/158 (19%)

Query: 263 LWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIG 318
           +  +L+ GY  +    EA  L+  M    V  N  ++  ++SG            C  I 
Sbjct: 98  MLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSG------------CTKIA 145

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           A   GI VH  + K  +  D               +++  + +F  +SE+NV  WTS+I 
Sbjct: 146 AFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLIC 205

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            YA     ++A+ LF EM E G +P  VT + ++SAC+
Sbjct: 206 GYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACA 243


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/688 (33%), Positives = 354/688 (51%), Gaps = 91/688 (13%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  L  + V ++C S  + +   ++H  +I      D  + T +       G L  A+Q+
Sbjct: 118 PDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQV 177

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFA------------------------------ 125
             +  + ++  WN+II     NG P E  A                              
Sbjct: 178 FDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLAL 237

Query: 126 -----IYLYLVTRTV---------LLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
                I+ Y +   +         L+N   KCG +    +LF+++P RDV SWN +I  Y
Sbjct: 238 EQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGY 297

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           +    + E L   ++M   G+ P+ +TMVS++ A   L  LE G+ +H +   S  + + 
Sbjct: 298 SLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESND 357

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            + N LV+MY KCG +  A KL  R  + + +VV W  ++SGY +     EA  LF EM 
Sbjct: 358 VVGNALVNMYAKCGNVNSAYKLFER--MPKKNVVAWNAIISGYSQHGHPHEALALFIEMQ 415

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------- 338
            + +   +  I  +L         +CA   AL  G  +H Y  ++    +          
Sbjct: 416 AQGIKPDSFAIVSVL--------PACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDI 467

Query: 339 -----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                N+  A  LF  + E++V  WT++I AY + GH + A+ LF +M+ETGTK D + F
Sbjct: 468 YAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAF 527

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
            A+L+ACSH GLVD+G  +       Y + PK++HY C+VDLLGRAGHL+E+   I +M 
Sbjct: 528 TAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMS 587

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           + PD ++W +LL ACR H N++L E A KHL E DP N G +VLL+NIYA+A R +D+++
Sbjct: 588 LEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAK 647

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQE 572
           +R  +++ G+KKQ G S++     V  F  GD  +P SE+IY ML  +   +++ G +  
Sbjct: 648 LRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPN 707

Query: 573 TSL---------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
           T+L                H E+LA++FG+I+TS    IRI+ NLR+C DCH+  K  S+
Sbjct: 708 TNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISK 767

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  REI++RD  RFH  + G CSC DYW
Sbjct: 768 IVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 152/335 (45%), Gaps = 37/335 (11%)

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
           + + W   I  Y   G + + L L  +M   G++PD++  +S+I A     DL+ G+ +H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
             +     +    +   L  MY KCG +  A+++  R  + + DVV W  +++GY ++ +
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDR--MPKRDVVSWNAIIAGYSQNGQ 201

Query: 277 RDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
             EA  LF EM    +  + + ++S M           CA + AL  G  +H Y  ++ I
Sbjct: 202 PYEALALFSEMQVNGIKPNSSTLVSVM---------PVCAHLLALEQGKQIHCYAIRSGI 252

Query: 336 SID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
             D               N+  A+ LF  +  ++V  W ++I  Y++     +A+  F  
Sbjct: 253 ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNR 312

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLL 436
           M+  G KP+ +T +++L AC+H   +++G     ++   Y I+   +        +V++ 
Sbjct: 313 MQVRGIKPNSITMVSVLPACAHLFALEQG-----QQIHGYAIRSGFESNDVVGNALVNMY 367

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            + G++  +      MP   +V  W++++     H
Sbjct: 368 AKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQH 401



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 44/222 (19%)

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------H 402
           N  +W   I  Y   G   KA+ L+ +M+ TG  PD++ F++++ AC            H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 403 GGLVDEGYD-----------------FLSKKSRVYNIKPK--MQHYGCMVDLLGRAGHLE 443
             ++  G++                  L    +V++  PK  +  +  ++    + G   
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 444 ESANFITSMP---IPPDVSIWSSLLRAC----RCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           E+    + M    I P+ S   S++  C       Q  ++  +A +   E+D L      
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNG-- 261

Query: 497 LLANIYAKAGRLDDMSRI--RMKLRDMGLKKQL--GYSLIEQ 534
            L N+YAK G ++   ++  RM +RD+     +  GYSL  Q
Sbjct: 262 -LVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQ 302


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/553 (39%), Positives = 314/553 (56%), Gaps = 44/553 (7%)

Query: 127 YLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
           ++ + T T LL+   KCG L    QLF+ L  + V+SW  MI+         EG  L  +
Sbjct: 229 HMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIR 288

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M  E + P+E+TM+SLI        L++GK LH ++  +   +S +L   LVDMY KC  
Sbjct: 289 MQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSD 348

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           I  A+ L    +    DV++WT ++S Y ++N  D+A  LFD+M    +    + I  +L
Sbjct: 349 IRNARALFDSTQ--NRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLL 406

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
           +         CA  GAL  G WVH YI K ++ +D               +I  A  LF 
Sbjct: 407 SL--------CAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFI 458

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           E   +++ +W ++I  +AM G+ ++A+D+F EME  G KP+ +TFI LL ACSH GLV E
Sbjct: 459 EAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTE 518

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G     K    + + P+++HYGCMVDLLGRAG L+E+   I SMPI P+  +W +L+ AC
Sbjct: 519 GKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAAC 578

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H+N +L E A   L E +P N G +VL++NIYA A R  D + +R  ++ +G+KK+ G
Sbjct: 579 RLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPG 638

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QET 573
           +S+IE  G VH+F  GD  +P    I  ML E+   L + G                +ET
Sbjct: 639 HSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKET 698

Query: 574 SLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
           +L  H E+LA+AFGLIST+  T IRIV NLR+C DCH+  K+ S++Y R I++RD  RFH
Sbjct: 699 ALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFH 758

Query: 633 RFQGGQCSCRDYW 645
            F+ G CSC DYW
Sbjct: 759 HFREGYCSCGDYW 771



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 173/357 (48%), Gaps = 35/357 (9%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
           ++  +C  ++    +FDK+  RDV+SW+TMI   +    +   L L+ +M    V P EV
Sbjct: 137 LMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEV 196

Query: 195 TMVSLISARTKLRDLEMGKNLHLFL--EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
            MVS+++      ++ MGK +H ++    +   +       L+DMY KCG +G A++L  
Sbjct: 197 AMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFN 256

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
              + +  VV WT +++G ++SN  +E  +LF  M E N+    + +  ++ +       
Sbjct: 257 --GLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVE------- 307

Query: 313 SCASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLFSEISEKNVYL 357
            C   GAL  G  +H YI +N  S+                +I  A  LF     ++V +
Sbjct: 308 -CGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMI 366

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLS 414
           WT++++AYA A    +A +LF +M  +G +P +VT ++LLS C+  G +D G   + ++ 
Sbjct: 367 WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYID 426

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           K+     ++        +VD+  + G +  +        I  D+ +W++++     H
Sbjct: 427 KE----RVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMH 478



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 94/210 (44%), Gaps = 27/210 (12%)

Query: 24  LVPKMRISRKFANVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVF 80
           L  +MR S     V P  + ++ +   C+   ++D  + +HS++    +  D  ++T + 
Sbjct: 386 LFDQMRTS----GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALV 441

Query: 81  EFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------V 131
           +     GD+  A ++  +    +I +WN+II    ++GY +E   I+  +         +
Sbjct: 442 DMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDI 501

Query: 132 TRTVLLNKC---GKLKEVCQLFDKLPNR-----DVISWNTMISCYTSMGMYREGLGLLSK 183
           T   LL+ C   G + E  +LF+K+ +       +  +  M+      G+  E   ++  
Sbjct: 502 TFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKS 561

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           M    + P+ +   +L++A    ++ ++G+
Sbjct: 562 M---PIKPNTIVWGALVAACRLHKNPQLGE 588


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/701 (32%), Positives = 370/701 (52%), Gaps = 108/701 (15%)

Query: 50  SCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
           +CS I  F    ++H  ++   L++D  ++  +  F    G +   +++  +  E  +  
Sbjct: 131 ACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVS 190

Query: 107 WNSIIENQLINGYPQEVFAIYLYLV----------------------------------- 131
           W S+I    +    +E   ++  +V                                   
Sbjct: 191 WTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMT 250

Query: 132 -----TRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                + T+++N       KCG +  V ++FD+  +++++ +NT++S Y   G+  E L 
Sbjct: 251 ELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLV 310

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           +L +M  +G  PD+VTM+S I+A  +L DL +GK+ H ++  + ++   ++ N ++DMY 
Sbjct: 311 VLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYM 370

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
           KCGK   A K+     +    VV W +L++G V+  E + A R+F EM E NL+SW  MI
Sbjct: 371 KCGKREAACKVFD--SMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMI 428

Query: 300 SGMLN--------------QDAEFK---------YKSCASIGALYHGIWVHVYIKKNQIS 336
             M+               Q+   K           +C  +GAL    W++ YI+KN I 
Sbjct: 429 GAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIH 488

Query: 337 IDNIEL----------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
           ID ++L                A  +F  + +++V  WT+ I   A+ G+A+ AI+LF E
Sbjct: 489 ID-MQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDE 547

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M +   K D   F+ALL+A SHGG VD+G        +++ + P++ HYGCMVDLLGRAG
Sbjct: 548 MLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAG 607

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
            LEE+ + + SMPI P+  IW S L ACR H+NV+ A +A + +T+  P   G HVLL+N
Sbjct: 608 LLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSN 667

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           IYA AG+ +D++R+R+++++ G +K  G S IE  G + +FTSGD  +  + +I LML E
Sbjct: 668 IYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQE 727

Query: 561 IEMTLQQQGLQETSL----------------QHRERLAVAFGLISTSEKTTIRIVNNLRI 604
           I   + Q G    +                 +H E+LA+A+GLI+T +   IR+V NLR+
Sbjct: 728 INCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRM 787

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           C DCHSF K+ S++Y REI +RDN R+H F+ G CSCRD+W
Sbjct: 788 CSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/643 (35%), Positives = 347/643 (53%), Gaps = 69/643 (10%)

Query: 39  PVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P S     V +SC+   +  E ++IH H++      D  + T +    V  G L  A ++
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
             +    ++  + ++I+     GY                       ++   +LFD++P 
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGY-----------------------IENAQKLFDEIPV 228

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           +DV+SWN MIS Y   G Y+E L L   M    V PDE TMV+++SA  +   +E+G+ +
Sbjct: 229 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV 288

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           HL++++     +  ++N L+D+Y KCG++  A  L  R  +   DV+ W TL+ GY   N
Sbjct: 289 HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER--LPYKDVISWNTLIGGYTHMN 346

Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
              EA  LF EM+        + +  +L         +CA +GA+  G W+HVYI K   
Sbjct: 347 LYKEALLLFQEMLRSGETPNDVTMLSIL--------PACAHLGAIDIGRWIHVYIDKRLK 398

Query: 336 SIDN-----------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            + N                 IE A+ +F+ I  K++  W ++I  +AM G A  + DLF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
             M + G +PD +TF+ LLSACSH G++D G       ++ Y + PK++HYGCM+DLLG 
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
           +G  +E+   I  M + PD  IW SLL+AC+ H NV+L E   ++L + +P N G++VLL
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
           +NIYA AGR +++++ R  L D G+KK  G S IE    VH+F  GD F+P + EIY ML
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638

Query: 559 NEIEMTLQQQGL---------------QETSLQHR-ERLAVAFGLISTSEKTTIRIVNNL 602
            E+E+ L++ G                +E +L+H  E+LA+AFGLIST   T + IV NL
Sbjct: 639 EEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 698

Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R+C +CH   K+ S++Y REI+ RD  RFH F+ G CSC DYW
Sbjct: 699 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/683 (34%), Positives = 359/683 (52%), Gaps = 82/683 (12%)

Query: 12  ETIFEPKLV------RLGLVPKMRISRKFANVCPVSLDVI-------MVERSCSSID--- 55
           ETI EP L+      R   +    +S     VC +SL ++        + +SC+ +    
Sbjct: 21  ETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASK 80

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           E  +IH H++      D  + T +    V    L  A ++  +    ++  + +     L
Sbjct: 81  EGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTA-----L 135

Query: 116 INGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
           + GY                     G ++    +FD++P +DV+SWN MIS Y   G Y+
Sbjct: 136 VTGYASR------------------GYIESARNMFDEIPVKDVVSWNAMISGYVETGNYK 177

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           E L L  +M    V PDE TMV++ISA  +   +E+G+ +H ++ +     +  ++N L+
Sbjct: 178 EALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALI 237

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           D Y KCG++  A  L     +   DV+ W  L+ GY   N   EA  LF EM+       
Sbjct: 238 DFYSKCGEMETACGLF--LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPN 295

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------- 339
            + +  +L+        +CA +GA+  G W+HVYI K    + N                
Sbjct: 296 DVTMLSILH--------ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCG 347

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            IE A+ +F+ +  K++  W ++I  +AM G A  A D+F  M +   KPD +TF+ LLS
Sbjct: 348 DIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLS 407

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACSH G++D G       +  Y I PK++HYGCM+DLLG +G  +E+   I++M + PD 
Sbjct: 408 ACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDG 467

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            IW SLL+AC+ H NV+L E   ++L + +P N G++VLL+NIYA AGR ++++RIR  L
Sbjct: 468 VIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLL 527

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------- 569
            D G+KK  G S IE    VH+F  GD F+P + EIY ML E+E+ LQ+ G         
Sbjct: 528 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVL 587

Query: 570 ------LQETSLQHR-ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                  +E +L+H  E+LA+AFGLIST  +T + IV NLR+C +CH   K+ S++Y RE
Sbjct: 588 QEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKRE 647

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           I+ RD  RFH F+ G CSC DYW
Sbjct: 648 IIARDRTRFHHFRDGVCSCNDYW 670


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/613 (37%), Positives = 345/613 (56%), Gaps = 77/613 (12%)

Query: 88  DLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC 147
           DL   +Q+     E E+++ N+++ N L++ Y                   KCG + +  
Sbjct: 255 DLQLGEQVCTCIGELELEV-NALMVNALVDMYM------------------KCGAIDKAR 295

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD+  +++++ +NT++S Y   G+ RE L +L +M   G  PD +TM+S +SA ++L 
Sbjct: 296 KIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELD 355

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D+  GK  H ++  + ++   ++ N +++MY KCGK   A ++  R  +++  V  W +L
Sbjct: 356 DVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRM-LNKTRVS-WNSL 413

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK----------------- 310
           ++G+V++ + + A ++F  M + +L+SW  MI G L Q++ FK                 
Sbjct: 414 IAGFVRNGDMESAWKIFSAMPDSDLVSWNTMI-GALVQESMFKEAIELFRVMQSEGITAD 472

Query: 311 -------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                    +C  +GAL    W+H YIKK  I  D               + + A  +F+
Sbjct: 473 KVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFN 532

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           ++ +++V  WT+ I A AM G+   AI+LF EM + G KPD V F+ALL+A SHGGLV++
Sbjct: 533 KMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQ 592

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G+        +Y I P+  HYGCMVDLLGRAG L E+ + I SM + P+  IW SLL AC
Sbjct: 593 GWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAAC 652

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H+NV +A +A + ++E DP   G HVLL+NIYA AGR DD++++R+ L++ G  K  G
Sbjct: 653 RVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPG 712

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----LQETSL--------- 575
            S IE  G + +FT+GD  +P    I  ML EI   L+  G    L    L         
Sbjct: 713 SSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEY 772

Query: 576 ---QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
              +H E+LA+AF LIST +   IR+  NLRIC DCHSF K+ S+ Y+REI++RDN RFH
Sbjct: 773 LLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFH 832

Query: 633 RFQGGQCSCRDYW 645
            FQ G CSC DYW
Sbjct: 833 FFQQGFCSCGDYW 845



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 201/441 (45%), Gaps = 68/441 (15%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            +CG++  + ++FDK+  R+V+SW ++I  Y   G Y+E + L  +M   G+ P+ VTMV
Sbjct: 185 GECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMV 244

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            +ISA  KL+DL++G+ +   + E  ++++  ++N LVDMY KCG I +A+K+    E  
Sbjct: 245 GVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFD--ECV 302

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           + ++VL+ T++S YV+     E   +  EM++       + +   ++  +E    SC   
Sbjct: 303 DKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSC--- 359

Query: 318 GALYHGIWVHVYIKKNQI-SIDNI------------------------------------ 340
                G W H Y+ +N +   DN+                                    
Sbjct: 360 -----GKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLI 414

Query: 341 ---------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                    E A+ +FS + + ++  W ++I A       ++AI+LF  M+  G   D+V
Sbjct: 415 AGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKV 474

Query: 392 TFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESAN 447
           T + + SAC + G +D     + ++ KK   +++     H G  +VD+  R G  + +  
Sbjct: 475 TMVGVASACGYLGALDLAKWIHGYIKKKDIHFDM-----HLGTALVDMFARCGDPQSAMQ 529

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG-AHVLLANIYAKAG 506
               M +  DVS W++ + A     N   A   F  + +     DG   V L    +  G
Sbjct: 530 VFNKM-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGG 588

Query: 507 RLDDMSRIRMKLRDM-GLKKQ 526
            ++    I   ++D+ G+  Q
Sbjct: 589 LVEQGWHIFRSMKDIYGIAPQ 609



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/449 (21%), Positives = 176/449 (39%), Gaps = 115/449 (25%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           ++++I  +++ G+  + + +  ++   G  PD  T   ++SA TK   L  G  +H    
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVH---- 162

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
                        +V M F                  E D+ +  +L+  Y +  E D  
Sbjct: 163 -----------GAIVKMGF------------------ERDMFVENSLIHFYGECGEIDCM 193

Query: 281 RRLFDEMVERNLISWTLMISGMLN------------------------------------ 304
           RR+FD+M ERN++SWT +I G                                       
Sbjct: 194 RRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKL 253

Query: 305 QDAEFKYKSCASIG-------ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYL 357
           QD +   + C  IG       AL     V +Y+K        I+ A  +F E  +KN+ L
Sbjct: 254 QDLQLGEQVCTCIGELELEVNALMVNALVDMYMK-----CGAIDKARKIFDECVDKNLVL 308

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLV 406
           + ++++ Y   G A++ + +  EM + G +PD++T ++ +SACS           HG ++
Sbjct: 309 YNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVL 368

Query: 407 D---EGYDFLSKKSRVYNIKPKMQHYGCMV-------------DLLG---RAGHLEESAN 447
               EG+D +        +K   Q   C V              L+    R G +E +  
Sbjct: 369 RNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWK 428

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL-TETDPLNDGAHVLLANIYAKAG 506
             ++MP   D+  W++++ A       K A   F+ + +E    +    V +A+     G
Sbjct: 429 IFSAMP-DSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLG 487

Query: 507 RLDDMSRIR--MKLRDMGLKKQLGYSLIE 533
            LD    I   +K +D+     LG +L++
Sbjct: 488 ALDLAKWIHGYIKKKDIHFDMHLGTALVD 516



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
           Y+++S+I  ++  G   KAI +F ++   G  PD  TF  +LSAC+    + EG+
Sbjct: 105 YMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 245/744 (32%), Positives = 366/744 (49%), Gaps = 124/744 (16%)

Query: 5   SVEPQLTETIFEPKLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHL 64
           S +PQLT ++    + +L   P   +  KF      +      +   S++++ ++IH+H+
Sbjct: 9   STKPQLTPSLLPLTIQQLQHHPHSTL--KFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHI 66

Query: 65  ITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVF 124
           I T+     QI    F                  G  P  + WN +I +      P+   
Sbjct: 67  IKTHFHHALQIPLNDFP----------------SGLSPSAQ-WNFVITSYTKRNQPRNAL 109

Query: 125 AIYLYL---------VTRTVLLNKCGKL------KEV----------------------- 146
            +Y  L              +L  CG++      KE+                       
Sbjct: 110 NVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMY 169

Query: 147 --CQ-------LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
             C        +FDK+  RDV+SW+TMI   +    +   L L+ +M    V P EV MV
Sbjct: 170 GECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMV 229

Query: 198 SLISARTKLRDLEMGKNLHLFL--EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           S+++      ++ MGK +H ++    +   +       L+DMY KCG +G A++L     
Sbjct: 230 SMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFN--G 287

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ---DAEFKY- 311
           + +  VV WT +++G ++SN  +EAR LFD    R+++ WT M+S        D  F   
Sbjct: 288 LTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLF 347

Query: 312 -------------------KSCASIGALYHGIWVHVYIKKNQISID-------------- 338
                                CA  GAL  G WVH YI K ++ +D              
Sbjct: 348 DQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKC 407

Query: 339 -NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
            +I  A  LF E   +++ +W ++I  +AM G+ ++A+D+F EME  G KP+ +TFI LL
Sbjct: 408 GDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLL 467

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
            ACSH GLV EG     K    + + P+++HYGCMVDLLGRAG L+E+   I SMPI P+
Sbjct: 468 HACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPN 527

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             +W +L+ ACR H+N +L E A   L E +P N G +VL++NIYA A R  D + +R  
Sbjct: 528 TIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKT 587

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
           ++ +G+KK+ G+S+IE  G VH+F  GD  +P    I  ML E+   L + G        
Sbjct: 588 MKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTV 647

Query: 571 --------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                   +ET+L  H E+LA+AFGLIST+  T IRIV NLR+C DCH+  K+ S++Y R
Sbjct: 648 LLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGR 707

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
            I++RD  RFH F+ G CSC DYW
Sbjct: 708 VIIVRDRNRFHHFREGYCSCGDYW 731


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/684 (34%), Positives = 364/684 (53%), Gaps = 84/684 (12%)

Query: 12  ETIFEPKLV------RLGLVPKMRISRKFANVCPVSLDVI-------MVERSCS---SID 55
           ETI EP L+      R   +    +S     VC +SL ++        + +SC+   +  
Sbjct: 92  ETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFK 151

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           E ++IH H++      D  + T +    V  G L  A+++  +    ++  + ++I+   
Sbjct: 152 EGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYA 211

Query: 116 INGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
             GY                       ++   +LFD++P +DV+SWN MIS Y   G Y+
Sbjct: 212 SRGY-----------------------IESAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           E L L  +M    + PDE TMV+++SA  +   +E+G+ +H ++++     +  ++N L+
Sbjct: 249 EALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLM 308

Query: 236 DMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           D+Y KCG++  A    G +E +   DV+ W TL+ GY   N   EA  LF EM+      
Sbjct: 309 DLYSKCGELETA---CGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERP 365

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN--------------- 339
             + +  +L         +CA +GA+  G W+HVYI K   S  N               
Sbjct: 366 NDVTMLSIL--------PACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKC 417

Query: 340 --IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             IE A+ +F+ I  K++  W ++I  +AM G A  A D+F  M + G +PD +TF+ LL
Sbjct: 418 GDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLL 477

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           SACS  G++D G       ++ Y I PK++HYGCM+DLLG +G  +E+   I +M + PD
Sbjct: 478 SACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPD 537

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             IW SLL+AC+   NV+L E   ++L + +P N G +VLL+NIYA AGR +++++IR  
Sbjct: 538 GVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRAL 597

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
           L D G+KK  G S IE    VH+F  GD F+P + EIY ML E+E+ L++ G        
Sbjct: 598 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEV 657

Query: 571 --------QETSLQHR-ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                   +E +L+H  E+LA+AFGLIST   T + IV NLR+C +CH   K+ S++Y R
Sbjct: 658 LQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKR 717

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           EI+ RD  RFH F+ G CSC DYW
Sbjct: 718 EIIARDRTRFHHFRDGVCSCNDYW 741


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/648 (34%), Positives = 341/648 (52%), Gaps = 79/648 (12%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P S     + +SC+    FE   +IH H++      D  + T +       G L  A ++
Sbjct: 64  PNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKV 123

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
             +    ++  + +     LI GY                     G ++   ++FD++P 
Sbjct: 124 FDRSSHRDVVSYTA-----LITGYASS------------------GNIRSAQEMFDEIPV 160

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           +DV+SWN MIS Y   G Y+E L L  +M    V PDE TMV+++SA  + R +E+G+ +
Sbjct: 161 KDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQV 220

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKS 274
           H ++++     +  ++N L+D+Y KCG++  A    G +E +   DVV W TL+ GY   
Sbjct: 221 HSWIDDHGFGSNLKIVNALIDLYSKCGQVETA---CGLFEGLSCKDVVSWNTLIGGYTHM 277

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
           N   EA  LF EM+        + I  +L         +CA +GA+  G W+HVYI K  
Sbjct: 278 NLYKEALLLFQEMLRSGESPNDVTIVSIL--------PACAHLGAIDIGRWIHVYIDKKL 329

Query: 335 ISIDN-----------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
             + N                 IE A+ +F+ +  K++  W ++I  +AM G A    DL
Sbjct: 330 KDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDL 389

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F  M + G +PD +TF+ LLSACSH G +D G       ++ Y+I PK++HYGCM+DLLG
Sbjct: 390 FSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLG 449

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
            +G  +E+   I +MP+ PD  IW SLL+ACR H N++LAE   ++L + +P N G++VL
Sbjct: 450 HSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVL 509

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY-- 555
           L+NIYA AG  D+++++R  L   G+KK  G S IE    VH+F  GD  +P + EIY  
Sbjct: 510 LSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGM 569

Query: 556 ------------------LMLNEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIR 597
                              +L E+E   ++  L+     H E+LA+AFGLIST   T + 
Sbjct: 570 LEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALR----HHSEKLAIAFGLISTKPGTKLT 625

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IV NLR+C +CH   K+ S++Y REI+ RD  RFH F+ G CSC D+W
Sbjct: 626 IVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 5/170 (2%)

Query: 337 IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
            D    A  +F+ I E N  +W +++  YA++     A+ L++ M   G  P+  TF  L
Sbjct: 13  FDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFL 72

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L +C+     +EG        ++   +P +  +  ++ +  + G LE+ A+ +       
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKL-GYEPDLYVHTSLISMYAQNGRLED-AHKVFDRSSHR 130

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
           DV  +++L+       N++ A+  F  +   D ++  A +   + YA+ G
Sbjct: 131 DVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMI---SGYAETG 177


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/614 (35%), Positives = 342/614 (55%), Gaps = 81/614 (13%)

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQ 148
           LG A    R  DE  +K  +++    LI+G                  L K G L +   
Sbjct: 155 LGLAADARRAFDEIHVK--DAVAWTMLISG------------------LAKMGMLCDTQL 194

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           L  + P RDVISW ++I+ Y+     RE +G    M + G++PDEVT+++++SA  KL+D
Sbjct: 195 LLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKD 254

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL---LGRYEIDEVDVVLWT 265
           LE+G++LHL +EE  M  S +L+  L+DMY KCG  G AQ++   LGR    +     W 
Sbjct: 255 LELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQS----WN 310

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKS-------- 313
            ++ GY K    D AR LFDEM  R++I++  M++G ++    ++A   + S        
Sbjct: 311 AIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRV 370

Query: 314 -----------CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLF 347
                      CAS+GAL  G  +H  I++  +  D                ++ A  +F
Sbjct: 371 DNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVF 430

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             + +++V+ WT++IA  A  G  + A++ F +M   G +P+ V++IA+L+ACSH  L++
Sbjct: 431 QRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLN 490

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG  +  +   +YNI P+++HYGCM+DLLGR+G L+E+ + + +MPI P+  IW+S+L A
Sbjct: 491 EGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSA 550

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H+++ LA+ A +HL + +P  DG +V L NIY  + + ++ S+IRM + +  +KK  
Sbjct: 551 CRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTA 610

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
           GYS I   G VHKF   D  +P   EI  ML EI   L+  G                 +
Sbjct: 611 GYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKE 670

Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
           +  L H E+LA+AFGLI+ +    + I  NLR+C DCHS +K+ S+++NREI++RD  RF
Sbjct: 671 QALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRF 730

Query: 632 HRFQGGQCSCRDYW 645
           H F+ G CSC D+W
Sbjct: 731 HHFREGTCSCNDFW 744



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 125/310 (40%), Gaps = 49/310 (15%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L+    LFD++P    +    + +C  +         L  +M   GV PD  T   L   
Sbjct: 53  LRYALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKC 112

Query: 203 RT---KLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            +   +   L +   LH     + +  +   + N L+ MY + G   +A++     EI  
Sbjct: 113 SSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFD--EIHV 170

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM--LNQDAE----FK-- 310
            D V WT L+SG  K     + + L  +   R++ISWT +I+     N+  E    FK  
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM 230

Query: 311 ---------------YKSCASIGALYHGIWVHVYI-KKNQISIDNIELAY-DLFSEISE- 352
                            +CA +  L  G  +H+ + +K   + +N+ +A  D++++  + 
Sbjct: 231 LSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDF 290

Query: 353 ---KNVY----------LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
              + V+           W ++I  Y   GH   A  LF EME      D +TF ++++ 
Sbjct: 291 GHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVR----DIITFNSMMTG 346

Query: 400 CSHGGLVDEG 409
             H G + E 
Sbjct: 347 YIHSGQLREA 356


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/670 (34%), Positives = 349/670 (52%), Gaps = 88/670 (13%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEF--LVFTGDLGYAQQIIRQGDEPEIKIWNSII 111
           + + ++IH+ ++ T L  DP  ++++  F  L  +G L YA+ +  Q   P     NSII
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNK-------------------------------- 139
                    QE    Y  ++ + ++ ++                                
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDT 120

Query: 140 ------------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GA 186
                       CG L    ++FDK+ ++ V+SW TMI  +       E + L  +M  +
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKS 180

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           E V P+EVT+V++++A  + RDL M K +H +++E        L   L+D+Y KCG +  
Sbjct: 181 ENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQL 240

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+ L  + +  E ++  W  +++G+V+ +  +EA  LF EM  + +    + ++ +L   
Sbjct: 241 ARDLFDKAQ--EKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLL--- 295

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +C  +GAL  G W+H YIKK +I +D               +IE A  +F E+ 
Sbjct: 296 -----LACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMP 350

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           EK+V  WT++I   AM G A+ A+  F EM   G KPD +TF+ +L+ACSH G VDEG  
Sbjct: 351 EKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGIS 410

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
             +  S  Y I+P ++HYG +VD+LGRAG + E+   I SMP+ PD  +   LL ACR H
Sbjct: 411 HFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIH 470

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
            N++ AE A K L E DP + G +VLL+NIY  + + ++  R R  + + G++K  G S 
Sbjct: 471 GNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQ 530

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ 576
           IE  G VH+F  GD  +  S EI  ML ++   L+  G                +ET L 
Sbjct: 531 IEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELS 590

Query: 577 -HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LA+AFGL+STS  T IR+V NLRIC DCHS  K+ S++YNREI++RD  RFH F+
Sbjct: 591 LHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFK 650

Query: 636 GGQCSCRDYW 645
            G CSCR +W
Sbjct: 651 DGTCSCRGFW 660



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 169/406 (41%), Gaps = 77/406 (18%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           +SC +  E ++IH H        D      +       G L  A+++  + ++  +  W 
Sbjct: 96  KSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWA 155

Query: 109 SII--------ENQLI----------NGYPQEVFAIYL---------------------- 128
           ++I         N+ +          N  P EV  + +                      
Sbjct: 156 TMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDE 215

Query: 129 -----YLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
                ++V  TVL++   KCG ++    LFDK   +++ SWN MI+ +     Y E L L
Sbjct: 216 HGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLL 275

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             +M  +G+  D+VTM SL+ A T L  LE+GK LH ++++  + +  +L   LVDMY K
Sbjct: 276 FREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAK 335

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG I  A ++   +E+ E DV+ WT L+ G     + + A + FDEM  + +    +   
Sbjct: 336 CGSIETAIQVF--HEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFV 393

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTS 360
           G+L         +C+  G +  GI             +++   Y +     +  +  +  
Sbjct: 394 GVL--------AACSHAGFVDEGI----------SHFNSMSDTYGI-----QPTIEHYGG 430

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-HGGL 405
           ++     AG   +A +L   M      PDQ     LL AC  HG L
Sbjct: 431 LVDILGRAGRIAEAEELIKSMP---MAPDQFVLGGLLGACRIHGNL 473


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/661 (35%), Positives = 355/661 (53%), Gaps = 84/661 (12%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           +D+ +++H+H+  T+     Q+S   FE         YA        + +I++ + II +
Sbjct: 60  LDQTQQLHAHITRTHFNHAQQVSFSPFE-----SHPRYALNTYTYMRKLDIEVDSFIIPS 114

Query: 114 QL-------INGYPQEV--FAIYLYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRD 157
            L       +    +E+  F++   LV+   ++N       +CG L     LFDK+  RD
Sbjct: 115 VLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERD 174

Query: 158 VISWNTMISCYTSM-----------------GMYR-----EGLGLLSKMGAEGVSPDEVT 195
           V+SW+TMI  Y ++                 G  R     EG  L  +M  E V P+++T
Sbjct: 175 VVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDIT 234

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           M+SLI +   +  +++GK LH ++  +   +S +L   LVDMY KCG+I  A+ +     
Sbjct: 235 MLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFD--S 292

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   DV+ WT ++S Y ++N  D A +LF +M +  +    L +  +L+         CA
Sbjct: 293 MKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSL--------CA 344

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
             GAL  G W H YI K  + +D               +I  A  LFSE  ++++  W  
Sbjct: 345 VNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNV 404

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++A Y M G+ +KA+ LF EME  G KP+ +TFI  L ACSH GLV EG     K    +
Sbjct: 405 MMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDF 464

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            + PK++HYGCMVDLLGRAG L+E+   I SMP+ P+++IW ++L AC+ H+N  + E A
Sbjct: 465 GLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELA 524

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L   +P N G  VL++NIYA A R +D++ +R  ++D G+KK+ G S IE  G VH 
Sbjct: 525 ARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHD 584

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVA 584
           F  GD  +P  E+I  ML E+   L++ G                +ET+L  H E+LA+A
Sbjct: 585 FKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMA 644

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLIST+  T IR+V NLRIC DCH+  K+ S++Y R I++RD  RFH F+ G CSC  Y
Sbjct: 645 FGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGY 704

Query: 645 W 645
           W
Sbjct: 705 W 705


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/688 (34%), Positives = 354/688 (51%), Gaps = 92/688 (13%)

Query: 12  ETIFEPKLV------RLGLVPKMRISRKFANVCPVSLDVI-------MVERSCSSIDEF- 57
           ETI EP L+      R   +    +S  +  VC +SL ++        + +SC+    F 
Sbjct: 46  ETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFR 105

Query: 58  --ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
             ++IH H++      D  + T +    V  G L  A+++  Q    ++  + +     L
Sbjct: 106 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTA-----L 160

Query: 116 INGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
           I GY  +                  G +    ++FD++P +DV+SWN MIS Y   G  +
Sbjct: 161 ITGYASK------------------GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNK 202

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           E L L  +M    V PDE TMVS++SA  +   +E+G+ +H ++++     +  ++N L+
Sbjct: 203 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 262

Query: 236 DMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           D+Y KCG   E +   G +E +   DV+ W TL+ GY   N   EA  LF EM+      
Sbjct: 263 DLYIKCG---EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 319

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN--------------- 339
             + +  +L         +CA +GA+  G W+HVYI K    + N               
Sbjct: 320 NDVTMLSIL--------PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKC 371

Query: 340 --IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             IE A  +F  I  +++  W ++I  +AM G A  A D+F  M +   +PD +TF+ LL
Sbjct: 372 GDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLL 431

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           SACSH G++D G          Y I PK++HYGCM+DLLG +G  +E+   I +M + PD
Sbjct: 432 SACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPD 491

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             IW SLL+AC+ H NV+L E   ++L + +P N G++VLL+NIYA AGR +++++IR  
Sbjct: 492 GVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRAL 551

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY--------------------LM 557
           L D G+KK  G S IE    VH+F  GD F+P + EIY                     +
Sbjct: 552 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEV 611

Query: 558 LNEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
           L E+E   ++  L+     H E+LA+AFGLIST   T + IV NLR+C +CH   K+ S+
Sbjct: 612 LQEMEEEWKEGALR----HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISK 667

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +Y REI+ RD  RFH F+ G CSC DYW
Sbjct: 668 IYKREIIARDRTRFHHFRDGVCSCNDYW 695


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/639 (35%), Positives = 342/639 (53%), Gaps = 69/639 (10%)

Query: 37  VCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           + P S     + +SC+   +  E ++IH+ ++   L  D  + T +       G +  A 
Sbjct: 74  LSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAH 133

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           ++       ++  + +     +I GY                     G + +  ++FD++
Sbjct: 134 KVFDTSSHRDVVSYTA-----MITGYASR------------------GNMDKAQKMFDEI 170

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P +DV+SWN MIS Y  +G Y+E L L ++M    V PDE TM +++S  T   ++E+G+
Sbjct: 171 PIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGR 230

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +H +++      +  L+N L+D+Y KCG++  A  L    +    DV+ W TL+ GY  
Sbjct: 231 QIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK--DVISWNTLIGGYAY 288

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
            N   EA  +F EM++       + +  +L         +CA +GA+  G W+HVYI K 
Sbjct: 289 INHHKEALLVFQEMLKLGETPNDVTMLSIL--------PACAHLGAIDIGRWIHVYIDKK 340

Query: 334 ----------QISI-------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
                     Q S+        NIE A  +F  I  K++    ++I  +AM G A  A D
Sbjct: 341 LKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFD 400

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           L   M++ G +PD +TF+ LLSACSH GL D G       +  Y I+PK++HYGCM+DLL
Sbjct: 401 LLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLL 460

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GR+G  +E+   I SM + PD  IW SLL+AC+ H+N++L E   + L + +P N G++V
Sbjct: 461 GRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYV 520

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+NIYA + R DD++R+R  L D GLKK  G S IE    VH+F  GD F+P ++EIY 
Sbjct: 521 LLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYK 580

Query: 557 MLNEIEMTLQQQG---------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVN 600
           ML EI+  L + G               L+E +L  H E+LA+AFGLIST   T +RIV 
Sbjct: 581 MLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVK 640

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           NLR+C +CH   K+ S++Y REI+ RD  RFH F+ G C
Sbjct: 641 NLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 156/344 (45%), Gaps = 45/344 (13%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L     +F  +   + +SWNTMI  +         L L   M + G+SP+  T   L  +
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
             K +  + GK +H  + +  + +   +   L+ MY + G + +A K+         DVV
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSS--HRDVV 145

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG------------MLNQDAEFK 310
            +T +++GY      D+A+++FDE+  ++++SW  MISG            + N+  +  
Sbjct: 146 SYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMD 205

Query: 311 YK-----------SCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAY 344
            K           +C   G +  G  +H +I  +            ID       +E A+
Sbjct: 206 VKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAH 265

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF  +  K+V  W ++I  YA   H ++A+ +F EM + G  P+ VT +++L AC+H G
Sbjct: 266 GLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLG 325

Query: 405 LVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
            +D G   + ++ KK +       +Q    ++D+  + G++E +
Sbjct: 326 AIDIGRWIHVYIDKKLKGIITNTSLQ--TSLIDMYAKCGNIEAA 367



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 81/182 (44%), Gaps = 5/182 (2%)

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  +F  I E N   W ++I  +A++     A++L++ M   G  P+  TF  L  +C+ 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
                EG    ++  + Y +   +  +  ++ +  + G +E+ A+ +       DV  ++
Sbjct: 91  SKAAQEGKQIHAQILK-YGLTVDLHVHTSLISMYAQNGIVED-AHKVFDTSSHRDVVSYT 148

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +++       N+  A+  F  +   D ++  A +   + YA+ GR  +   +  ++  M 
Sbjct: 149 AMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMI---SGYAEIGRYKEALELFNEMMKMD 205

Query: 523 LK 524
           +K
Sbjct: 206 VK 207


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/652 (35%), Positives = 343/652 (52%), Gaps = 83/652 (12%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P S     + +SC+    FE   +IH+ ++      D  + T +       G L  A+++
Sbjct: 62  PNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKV 121

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
                  ++     +    LI GY                     G  +   ++FD++  
Sbjct: 122 FDASSHRDV-----VSCTALITGYASR------------------GDFRSARKVFDEITE 158

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RDV+SWN MI+ Y   G Y E L L  +M    V PDE T+VS++SA  +   +E+G+ +
Sbjct: 159 RDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQV 218

Query: 216 HLFLE--------ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTT 266
           H +++         S++KI    +N L+D+Y KCG +  A    G +E +   DVV W T
Sbjct: 219 HSWVDDDDDDHGFSSSLKI----VNALIDLYSKCGDVETA---FGLFEGLSCKDVVSWNT 271

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           L+ GY  +N   EA  LF EM+        + +  +L         +CA +GA+  G W+
Sbjct: 272 LIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVL--------PACAHLGAIDIGRWI 323

Query: 327 HVYIKKNQISIDN-----------------IELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
           HVYI K    + N                 IE A+ +F+ +  +++  W ++I  +AM G
Sbjct: 324 HVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHG 383

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
            A  A DLF  M     +PD +TF+ LLSACSH GL+D G       ++ YN+ PK++HY
Sbjct: 384 RANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHY 443

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GCM+DLLG +G  +E+   I +MP+ PD  IW SLL+AC+ H N++LAE   + L + +P
Sbjct: 444 GCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEP 503

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            N G++VLL+NIYA AGR +D++R+R  L   G+KK  G S IE    VH+F  GD  +P
Sbjct: 504 ENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHP 563

Query: 550 HSEEIYLMLNEIEMTLQQQGL---------------QETSLQHR-ERLAVAFGLISTSEK 593
              EIY ML E+++ L++ G                +E +L+H  E+LA+AFGLIST   
Sbjct: 564 RRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 623

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           T + IV NLR+C +CH   K+ S++Y REIV RD  RFH F+ G CSC DYW
Sbjct: 624 TKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 186/413 (45%), Gaps = 61/413 (14%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            +F+ +   +++ WNTM+  + S       L +  +M + G  P+  +   L+ +  K +
Sbjct: 19  SVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSK 78

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNY----LVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
             E G+ +H       +K+   L  Y    L+ MY + G + +A+K+         DVV 
Sbjct: 79  AFEEGRQIH----AQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDAS--SHRDVVS 132

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYK------- 312
            T L++GY    +   AR++FDE+ ER+++SW  MI+G +     ++A   +K       
Sbjct: 133 CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192

Query: 313 ------------SCASIGALYHGIWVHVYIK--------KNQISIDN-----------IE 341
                       +CA  G++  G  VH ++          + + I N           +E
Sbjct: 193 RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVE 252

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A+ LF  +S K+V  W ++I  Y      ++A+ LF EM  +G  P+ VT +++L AC+
Sbjct: 253 TAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACA 312

Query: 402 HGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           H G +D G   + ++ KK +    +  ++    ++D+  + G +E +     SM +   +
Sbjct: 313 HLGAIDIGRWIHVYIDKKLKGVTNETSLR--TSLIDMYAKCGDIEAAHQVFNSM-LYRSL 369

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHL--TETDPLNDGAHVLLANIYAKAGRLD 509
           S W++++     H     A   F  +     +P +D   V L +  + +G LD
Sbjct: 370 SSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEP-DDITFVGLLSACSHSGLLD 421



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 9/176 (5%)

Query: 337 IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
            D +  A  +F  I E N+ +W +++  +A +     A+++++ M   G  P+  +F  L
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY--GCMVDLLGRAGHLEESANFITSMPI 454
           L +C+     +EG       ++V  +   +  Y    ++ +  R G LE+ A  +     
Sbjct: 71  LKSCAKSKAFEEGRQI---HAQVLKLGCGLDRYVHTSLISMYARNGGLED-ARKVFDASS 126

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
             DV   ++L+       + + A   F  +TE D ++  A +     Y + GR ++
Sbjct: 127 HRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMI---TGYVENGRYEE 179


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/688 (34%), Positives = 354/688 (51%), Gaps = 92/688 (13%)

Query: 12  ETIFEPKLV------RLGLVPKMRISRKFANVCPVSLDVI-------MVERSCSSIDEF- 57
           ETI EP L+      R   +    +S  +  VC +SL ++        + +SC+    F 
Sbjct: 61  ETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFR 120

Query: 58  --ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
             ++IH H++      D  + T +    V  G L  A+++  Q    ++  + +     L
Sbjct: 121 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTA-----L 175

Query: 116 INGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
           I GY  +                  G +    ++FD++P +DV+SWN MIS Y   G  +
Sbjct: 176 ITGYASK------------------GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNK 217

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           E L L  +M    V PDE TMVS++SA  +   +E+G+ +H ++++     +  ++N L+
Sbjct: 218 EALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 236 DMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           D+Y KCG   E +   G +E +   DV+ W TL+ GY   N   EA  LF EM+      
Sbjct: 278 DLYIKCG---EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 334

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN--------------- 339
             + +  +L         +CA +GA+  G W+HVYI K    + N               
Sbjct: 335 NDVTMLSIL--------PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKC 386

Query: 340 --IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             IE A  +F  I  +++  W ++I  +AM G A  A D+F  M +   +PD +TF+ LL
Sbjct: 387 GDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLL 446

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           SACSH G++D G          Y I PK++HYGCM+DLLG +G  +E+   I +M + PD
Sbjct: 447 SACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPD 506

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             IW SLL+AC+ + NV+L E   ++L + +P N G++VLL+NIYA AGR +++++IR  
Sbjct: 507 GVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRAL 566

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY--------------------LM 557
           L D G+KK  G S IE    VH+F  GD F+P + EIY                     +
Sbjct: 567 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEV 626

Query: 558 LNEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
           L E+E   ++  L+     H E+LA+AFGLIST   T + IV NLR+C +CH   K+ S+
Sbjct: 627 LQEMEEEWKEGALR----HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISK 682

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +Y REI+ RD  RFH F+ G CSC DYW
Sbjct: 683 IYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/638 (36%), Positives = 334/638 (52%), Gaps = 78/638 (12%)

Query: 49  RSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           +SC+    FE   +IH+ ++      D    T +       G L  A+++     + ++ 
Sbjct: 91  KSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDV- 149

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
               +    LI GY                     G ++   ++FD +  RDV+SWN MI
Sbjct: 150 ----VSCTALITGYASR------------------GDVRSARKVFDXITERDVVSWNAMI 187

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE---- 221
           + Y     Y E L L  +M    V PDE T+VS++SA  +   +E+G+ +H  +++    
Sbjct: 188 TGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGF 247

Query: 222 -STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
            S++KI    +N  + +Y KCG +  A  L         DVV W TL+ GY   N   EA
Sbjct: 248 GSSLKI----VNAFIGLYSKCGDVEIASGLFEGLSCK--DVVSWNTLIGGYTHMNLYKEA 301

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN- 339
             LF EM+        + +  +L         +CA +GA+  G W+HVYI K    + N 
Sbjct: 302 LLLFQEMLRSGESPNDVTMLSVL--------PACAHLGAIDIGRWIHVYIDKRLKGVTNG 353

Query: 340 ----------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                           IE A+ +F+ +  K++  W ++I  +AM G A  A DLF  M +
Sbjct: 354 SALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRK 413

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            G +PD +T + LLSACSH GL+D G       ++ YNI PK++HYGCM+DLLG AG  +
Sbjct: 414 NGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFK 473

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           E+   I  MP+ PD  IW SLL+AC+ H N++LAE   + L E +P N G++VLL+NIYA
Sbjct: 474 EAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYA 533

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
            AGR +D++RIR  L   G+KK  G S IE    VH+F  GD  +P S EIY ML E+++
Sbjct: 534 TAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDV 593

Query: 564 TLQQQGL---------------QETSLQHR-ERLAVAFGLISTSEKTTIRIVNNLRICGD 607
            L++ G                +E +L+H  E+LA+AFGLIST   T + +V NLR+C +
Sbjct: 594 LLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRN 653

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CH   K+ S++Y REIV RD  RFH F+ G CSC DYW
Sbjct: 654 CHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 188/427 (44%), Gaps = 67/427 (15%)

Query: 142 KLKEVCQL---FDKLP----------NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           KL E+C +   FD LP            +++ WNTM+    S       L +  +M + G
Sbjct: 19  KLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXG 78

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY----LVDMYFKCGKI 244
             P+  T   L+ +  K +  E G+ +H       MK+   L  Y    L+ MY + G++
Sbjct: 79  HVPNAYTFPFLLKSCAKSKTFEEGRQIH----AQVMKLGCELDRYAHTSLISMYARNGRL 134

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
            +A+K+       + DVV  T L++GY    +   AR++FD + ER+++SW  MI+G + 
Sbjct: 135 EDARKVFDXS--SQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVE 192

Query: 305 ----QDAEFKYK-------------------SCASIGALYHGIWVHVYIKKNQ-----IS 336
               ++A   +K                   +CA  G++  G  +H  +  +      + 
Sbjct: 193 NCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLK 252

Query: 337 IDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
           I N           +E+A  LF  +S K+V  W ++I  Y      ++A+ LF EM  +G
Sbjct: 253 IVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSG 312

Query: 386 TKPDQVTFIALLSACSHGGLVDEG-YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
             P+ VT +++L AC+H G +D G +  +    R+  +         ++D+  + G +E 
Sbjct: 313 ESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEA 372

Query: 445 SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET--DPLNDGAHVLLANIY 502
           +     SM +   +S W++++     H     A   F  + +   +P +D   V L +  
Sbjct: 373 AHQVFNSM-MHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEP-DDITLVGLLSAC 430

Query: 503 AKAGRLD 509
           + +G LD
Sbjct: 431 SHSGLLD 437


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 240/706 (33%), Positives = 367/706 (51%), Gaps = 114/706 (16%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGDLGYAQQII 96
           P+SL       +C+++ E  +IHS  I T L  +    T+V  F     +GD+ YA+++ 
Sbjct: 38  PISL-----LETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVF 92

Query: 97  RQGDEPEIKIWNSIIEN----------------QLINGYPQEVFAIYLYLVTRT------ 134
            +  +P + IWN++I+                  L++    + F     L   T      
Sbjct: 93  DEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALK 152

Query: 135 ---VLLNK-----------------------CGKLKEVCQLFDKLPNRDVISWNTMISCY 168
              VLLN                        CG +    ++FD     +V++WN ++S Y
Sbjct: 153 YGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGY 212

Query: 169 TSMGMYREGLGLLSKM--GAEGVSPDEVTMVSLISARTKLRDLEMGKNLH-LFLEESTMK 225
                Y E   L  +M    E VSP+ VT+V ++SA +KL+DL  GK ++  +++E  ++
Sbjct: 213 NRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVE 272

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  L N L+DM+  CG++  A+ +    E+   DV+ WT++V+G+  +   D AR+ FD
Sbjct: 273 PNLILENALIDMFASCGEMDAARGVFD--EMKTRDVISWTSIVTGFANTCRIDLARKYFD 330

Query: 286 EMVERNLISWTLMISGMLNQDA-------------------EFKYKS----CASIGALYH 322
           +M ER+ +SWT MI G L  +                    EF   S    CA +GAL  
Sbjct: 331 QMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALEL 390

Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G W   YI KN+I  D               N+E A  +F+E+ +K+ + WT++I   A 
Sbjct: 391 GEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLAN 450

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            GH ++A+ +F  M E    PD++T+I ++ AC+H GLV +G  F S  +  + IKP + 
Sbjct: 451 NGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLT 510

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HYGCMVDLLGRAGHL+E+   I +MP+ P+  +W SLL ACR H+NV+LAE A   + E 
Sbjct: 511 HYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILEL 570

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P N   +VLL NIYA   +  ++  +R  + + G+KK  G SL+E  G V++F +GD  
Sbjct: 571 EPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKS 630

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTS 591
           +P S+EIY  L  ++  L   G                +ET+L  H E+LA+A+ LIS+ 
Sbjct: 631 HPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSG 690

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
           +  TIRIV NLR+C DCH    V S+VYNRE+++RD  RFH F+ G
Sbjct: 691 KGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/691 (33%), Positives = 366/691 (52%), Gaps = 107/691 (15%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           +IH  ++     +D  +   +  F    G+L  A+++  +  E  +  W S+I       
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 119 YPQEVFAIYLYLV----------TRTVLLNKCGKLKEV---------------------- 146
           + ++   ++  +V          T   +++ C KL+++                      
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274

Query: 147 ---------C-------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
                    C       +LFD+    ++   N M S Y   G+ RE LG+ + M   GV 
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD ++M+S IS+ ++LR++  GK+ H ++  +  +   ++ N L+DMY KC +   A ++
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
             R  +    VV W ++V+GYV++ E D A   F+ M E+N++SW  +ISG++ Q + F+
Sbjct: 395 FDR--MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLV-QGSLFE 451

Query: 311 -------------------------YKSCASIGALYHGIWVHVYIKKNQISID------- 338
                                      +C  +GAL    W++ YI+KN I +D       
Sbjct: 452 EAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTL 511

Query: 339 --------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                   + E A  +F+ ++ ++V  WT+ I A AMAG+A++AI+LF +M E G KPD 
Sbjct: 512 VDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           V F+  L+ACSHGGLV +G +      +++ + P+  HYGCMVDLLGRAG LEE+   I 
Sbjct: 572 VAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE 631

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            MP+ P+  IW+SLL ACR   NV++A +A + +    P   G++VLL+N+YA AGR +D
Sbjct: 632 DMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWND 691

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG- 569
           M+++R+ +++ GL+K  G S I+  G  H+FTSGD  +P    I  ML+E+       G 
Sbjct: 692 MAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGH 751

Query: 570 ---LQETSL------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
              L    +            +H E+LA+A+GLIS+++ TTIRIV NLR+C DCHSF K 
Sbjct: 752 VPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKF 811

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S+VYNREI++RDN RFH  + G+CSC D+W
Sbjct: 812 ASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 34/262 (12%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           +N++I  Y S G+  E + L  +M   G+SPD+ T    +SA  K R    G  +H  + 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           +        + N LV  Y +CG++  A+K+    E+ E +VV WT+++ GY + +   +A
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFD--EMSERNVVSWTSMICGYARRDFAKDA 219

Query: 281 RRLF-----DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
             LF     DE V  N ++   +IS            +CA +  L  G  V+ +I+ + I
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVIS------------ACAKLEDLETGEKVYAFIRNSGI 267

Query: 336 SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
            +++               I++A  LF E    N+ L  ++ + Y   G  ++A+ +F  
Sbjct: 268 EVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNL 327

Query: 381 MEETGTKPDQVTFIALLSACSH 402
           M ++G +PD+++ ++ +S+CS 
Sbjct: 328 MMDSGVRPDRISMLSAISSCSQ 349



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 16/98 (16%)

Query: 338 DNIELAYDLFSEISEK--NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
           +++  A ++F E SE     +++ S+I  YA +G   +AI LFL M  +G  PD+ TF  
Sbjct: 81  ESLSFAKEVF-ENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPF 139

Query: 396 LLSACS-----------HGGLVDEGY--DFLSKKSRVY 420
            LSAC+           HG +V  GY  D   + S V+
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVH 177


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/545 (37%), Positives = 307/545 (56%), Gaps = 55/545 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  L    ++FD L    +ISW  MI+ Y       EG+ L  KM  EG+ P+E+TM+S
Sbjct: 274 KCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLS 333

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+        LE+GK LH F   +   +S  L    +DMY KCG +  A+ +   ++   
Sbjct: 334 LVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFK--S 391

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMV-------ERNLISWTLMISGMLNQDAEFKY 311
            D+++W+ ++S Y ++N  DEA  +F  M        ER ++S  LMI            
Sbjct: 392 KDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVS-LLMI------------ 438

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVY 356
             CA  G+L  G W+H YI K  I  D               +I+ A+ LF+E +++++ 
Sbjct: 439 --CAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDIS 496

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
           +W ++I+ +AM GH + A++LF EME  G  P+ +TFI  L ACSH GL+ EG     K 
Sbjct: 497 MWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKM 556

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
              +   PK++HYGCMVDLLGRAG L+E+   I SMP+ P+++++ S L AC+ H+N+KL
Sbjct: 557 VHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKL 616

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
            E A K     +P   G +VL++NIYA A R  D++ IR  ++D G+ K+ G S IE  G
Sbjct: 617 GEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNG 676

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------QETSLQ----HRER 580
            +H+F  GD  +P ++++Y M++E+   L+  G             +E  +     H E+
Sbjct: 677 LLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEK 736

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+A+GLIST+    IRIV NLR+C DCH+  K+ S++Y REI++RD  RFH F+ G CS
Sbjct: 737 LAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCS 796

Query: 641 CRDYW 645
           C DYW
Sbjct: 797 CCDYW 801



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 187/388 (48%), Gaps = 39/388 (10%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           NG+  +VF     ++    + ++ G L     LFDK+ N+DV+SW+TMI  Y   G+  E
Sbjct: 153 NGFHGDVFVCNALIM----MYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDE 208

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM--KISGSLLNYL 234
            L LL  M    V P E+ M+S+     +L DL++GK +H ++  +    K    L   L
Sbjct: 209 ALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTAL 268

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           +DMY KC  +  A+++     + +  ++ WT +++ Y+  N  +E  RLF +M+   +  
Sbjct: 269 IDMYVKCENLAYARRVFD--GLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFP 326

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------N 339
             + +  ++        K C + GAL  G  +H +  +N  ++                +
Sbjct: 327 NEITMLSLV--------KECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGD 378

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           +  A  +F     K++ +W+++I++YA      +A D+F+ M   G +P++ T ++LL  
Sbjct: 379 VRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMI 438

Query: 400 CSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           C+  G ++ G   + ++ K+     IK  M      VD+    G + ++A+ + +     
Sbjct: 439 CAKAGSLEMGKWIHSYIDKQG----IKGDMILKTSFVDMYANCGDI-DTAHRLFAEATDR 493

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           D+S+W++++     H + + A   F+ +
Sbjct: 494 DISMWNAMISGFAMHGHGEAALELFEEM 521


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/698 (31%), Positives = 354/698 (50%), Gaps = 104/698 (14%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQ-VFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           S +S+   +++H+ ++ + L R   +  + V      +  L YA  +     +PE  + N
Sbjct: 32  SATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCN 91

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNK----------------------------- 139
             +     +  P++   +Y  + T+ + +++                             
Sbjct: 92  RFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKL 151

Query: 140 ------------------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                             CG++ E   +FDK+ +RDV++W+ MI  Y   G++ + L L 
Sbjct: 152 GFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLF 211

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            +M    V PDE+ + +++SA  +  +L  GK +H F+ E+ + +   L + LV MY  C
Sbjct: 212 EEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASC 271

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           G +  A  L  +  +   ++V  T +V+GY K  + + AR +F++MV+++L+ W+ MISG
Sbjct: 272 GSMDLALNLFEK--MTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISG 329

Query: 302 MLNQDAEFK-----------------------YKSCASIGALYHGIWVHVYIKKN----Q 334
               D+  +                         +CA +GAL    W+H+++ KN     
Sbjct: 330 YAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGA 389

Query: 335 ISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
           + I+N           +E A  +F ++  KNV  WT +I+A+AM G A  A+  F +ME+
Sbjct: 390 LPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMED 449

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
              +P+ +TF+ +L ACSH GLV+EG          +NI PK  HYGCMVDL GRA  L 
Sbjct: 450 ENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLR 509

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           E+   + +MP+ P+V IW SL+ ACR H  ++L E A K L E DP +DGAHV L+NIYA
Sbjct: 510 EALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYA 569

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
           KA R +D+ ++R  ++  G+ K+ G S  E    +H+F   D  + H++EIY  L E+  
Sbjct: 570 KARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVS 629

Query: 564 TLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
            L+  G    +                  H E+LA+ +GL+     + IRI+ NLR+C D
Sbjct: 630 KLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCED 689

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CH+F+K+ S+VY REIV+RD  RFH ++ G CSC+DYW
Sbjct: 690 CHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/690 (33%), Positives = 365/690 (52%), Gaps = 107/690 (15%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           +IH  ++     +D  +   +  F    G+L  A+++  +  E  +  W S+I       
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 119 YPQEVFAIYLYLV----------TRTVLLNKCGKLKEV---------------------- 146
           + ++   ++  +V          T   +++ C KL+++                      
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274

Query: 147 ---------C-------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
                    C       +LFD+    ++   N M S Y   G+ RE LG+ + M   GV 
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD ++M+S IS+ ++LR++  GK+ H ++  +  +   ++ N L+DMY KC +   A ++
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
             R  +    VV W ++V+GYV++ E D A   F+ M E+N++SW  +ISG++ Q + F+
Sbjct: 395 FDR--MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLV-QGSLFE 451

Query: 311 -------------------------YKSCASIGALYHGIWVHVYIKKNQISID------- 338
                                      +C  +GAL    W++ YI+KN I +D       
Sbjct: 452 EAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTL 511

Query: 339 --------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                   + E A  +F+ ++ ++V  WT+ I A AMAG+A++AI+LF +M E G KPD 
Sbjct: 512 VDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           V F+  L+ACSHGGLV +G +      +++ + P+  HYGCMVDLLGRAG LEE+   I 
Sbjct: 572 VAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE 631

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            MP+ P+  IW+SLL ACR   NV++A +A + +    P   G++VLL+N+YA AGR +D
Sbjct: 632 DMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWND 691

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG- 569
           M+++R+ +++ GL+K  G S I+  G  H+FTSGD  +P    I  ML+E+       G 
Sbjct: 692 MAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGH 751

Query: 570 ---LQETSL------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
              L    +            +H E+LA+A+GLIS+++ TTIRIV NLR+C DCHSF K 
Sbjct: 752 VPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKF 811

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
            S+VYNREI++RDN RFH  + G+CSC D+
Sbjct: 812 ASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 34/262 (12%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           +N++I  Y S G+  E + L  +M   G+SPD+ T    +SA  K R    G  +H  + 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           +        + N LV  Y +CG++  A+K+    E+ E +VV WT+++ GY + +   +A
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFD--EMSERNVVSWTSMICGYARRDFAKDA 219

Query: 281 RRLF-----DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
             LF     DE V  N ++   +IS            +CA +  L  G  V+ +I+ + I
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVIS------------ACAKLEDLETGEKVYAFIRNSGI 267

Query: 336 SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
            +++               I++A  LF E    N+ L  ++ + Y   G  ++A+ +F  
Sbjct: 268 EVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNL 327

Query: 381 MEETGTKPDQVTFIALLSACSH 402
           M ++G +PD+++ ++ +S+CS 
Sbjct: 328 MMDSGVRPDRISMLSAISSCSQ 349



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 16/98 (16%)

Query: 338 DNIELAYDLFSEISEK--NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
           +++  A ++F E SE     +++ S+I  YA +G   +AI LFL M  +G  PD+ TF  
Sbjct: 81  ESLSFAKEVF-ENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPF 139

Query: 396 LLSACS-----------HGGLVDEGY--DFLSKKSRVY 420
            LSAC+           HG +V  GY  D   + S V+
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVH 177


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/656 (33%), Positives = 342/656 (52%), Gaps = 84/656 (12%)

Query: 37  VCPVSLDVI-------MVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT 86
           VC VSL ++        + +SC+   +  E +++H  ++      D  I T +    V  
Sbjct: 92  VCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQN 151

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
           G L  AQ++  +    ++  + +     LI GY                     G ++  
Sbjct: 152 GRLEDAQKVXDKSSHRDVVSYTA-----LITGYASR------------------GXIESA 188

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
            ++FD++P +DV+SWN  IS Y   G Y+E L L  KM    V PDE TMV+++SA  + 
Sbjct: 189 HKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQS 248

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
             +E+G+ +H ++ +     +  ++N L+D+Y KCG++  A  L     +   DV+ W T
Sbjct: 249 GSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLF--QGLSNKDVISWNT 306

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           L+ GY   N   EA  LF +M+        + +  +L+        +CA +GA+  G W+
Sbjct: 307 LIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILS--------ACAHLGAIDIGRWI 358

Query: 327 HVYIKKNQISIDN-----------------IELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
           HVYI K    + N                 IE A  +F  +  +++  W ++I  +AM G
Sbjct: 359 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
            A  A D+F  M + G +PD +TF+ LLSACSH G++D G       +R Y + PK++HY
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHY 478

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GCM+DL G +G  +E+   I +M + PD  IW SLL+AC+ H NV+L E   ++L + +P
Sbjct: 479 GCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 538

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            N G++VLL+NIYA A R +++++ R  L D G+KK  G S IE    VH+F  GD F+P
Sbjct: 539 ENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 598

Query: 550 HSEEIY--------------------LMLNEIEMTLQQQGLQETSLQHRERLAVAFGLIS 589
            + EIY                     +L E+E   ++  L+     H E+LA+AFGLIS
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALR----HHSEKLAIAFGLIS 654

Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           T   T + IV NLR+C +CH   K+ S++Y REI+ RD  RFH F+ G+CSC DYW
Sbjct: 655 TKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 309/560 (55%), Gaps = 56/560 (10%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG++ +   LFDK+ +RDV++WN MI  Y+    Y   L L  +M   G  PD + + ++
Sbjct: 164 CGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTV 223

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +SA     +L  GK +H F++++  ++   +   LV+MY  CG +  A+++    ++   
Sbjct: 224 LSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYD--QLPSK 281

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG------------MLNQDA 307
            +V+ T ++SGY K     +AR +FD MVE++L+ W+ MISG            + N+  
Sbjct: 282 HMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQ 341

Query: 308 EFKY-----------KSCASIGALYHGIWVHVYIKKNQIS---------ID------NIE 341
             +             +CA++GAL    W+H Y  KN            ID      N+ 
Sbjct: 342 RRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLV 401

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A ++F  +  KNV  W+S+I A+AM G A  AI LF  M+E   +P+ VTFI +L ACS
Sbjct: 402 KAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACS 461

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GLV+EG  F S     + I P+ +HYGCMVDL  RA HL ++   I +MP PP+V IW
Sbjct: 462 HAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIW 521

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            SL+ AC+ H  ++L E A   L E +P +DGA V+L+NIYAK  R DD+  +R  ++  
Sbjct: 522 GSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHK 581

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS------- 574
           G+ K+   S IE    VH F   D ++  S+EIY  L+ +   L+  G   ++       
Sbjct: 582 GVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDL 641

Query: 575 ---------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
                    L H E+LA+ +GLI   +++ IRIV NLRIC DCHSFMK+ S+V+  EIV+
Sbjct: 642 EEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVM 701

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F GG CSCRDYW
Sbjct: 702 RDRTRFHHFNGGICSCRDYW 721



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 156/411 (37%), Gaps = 107/411 (26%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LF  +PN      N ++  ++        L L   +   G   D  +   L+ A +KL  
Sbjct: 71  LFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSA 130

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L +G  +H                                 L  ++     D  + + L+
Sbjct: 131 LNLGLEIH--------------------------------GLASKFGFFHADPFIQSALI 158

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----------------- 311
           + Y       +AR LFD+M  R++++W +MI G  +Q+A + +                 
Sbjct: 159 AMYAACGRIMDARFLFDKMSHRDVVTWNIMIDG-YSQNAHYDHVLKLYEEMKTSGTEPDA 217

Query: 312 -------KSCASIGALYHGIWVHVYIKKN--------QISIDN-------IELA---YD- 345
                   +CA  G L +G  +H +IK N        Q S+ N       + LA   YD 
Sbjct: 218 IILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQ 277

Query: 346 ---------------------------LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
                                      +F  + EK++  W+++I+ YA +    +A+ LF
Sbjct: 278 LPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLF 337

Query: 379 LEMEETGTKPDQVTFIALLSACSH-GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
            EM+     PDQ+T ++++SAC++ G LV   +         +     + +   ++D+  
Sbjct: 338 NEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINN--ALIDMYA 395

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           + G+L ++     +MP    +S WSS++ A   H +   A   F  + E +
Sbjct: 396 KCGNLVKAREVFENMPRKNVIS-WSSMINAFAMHGDADSAIALFHRMKEQN 445


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/689 (33%), Positives = 365/689 (52%), Gaps = 105/689 (15%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           +IH  +I  +  +D  +   +  F    G+L  A+++  +  E  +  W S+I       
Sbjct: 154 QIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARRE 213

Query: 119 YPQEVFAIYLYLV----------TRTVLLNKCGKLKEV---------------------- 146
           + ++   ++  +V          T   +++ C KL+++                      
Sbjct: 214 FAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMI 273

Query: 147 ---------C-------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
                    C       +LFD+    ++   N M S Y   G+ +E LG+L+ M   G+ 
Sbjct: 274 SALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIR 333

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD ++M+S IS+ ++LR++  GK+ H ++  +  +   ++ N L+DMY KC +   A ++
Sbjct: 334 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 393

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE-- 308
             R  +    VV W ++V+GY+++ E D A   F+ M E+N++SW  +IS ++ ++    
Sbjct: 394 FDR--MSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEE 451

Query: 309 ----FKY------------------KSCASIGALYHGIWVHVYIKKNQISID-------- 338
               F Y                   +C  +GAL    W++ YI+KN+I +D        
Sbjct: 452 AIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLV 511

Query: 339 -------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                  + E A  +F+ ++ ++V  WT+ I A AMAG+ ++AI+LF EM E G KPD V
Sbjct: 512 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGV 571

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
            FI  L+AC HGGLV +G +  +   +++ + P+  HYGCMVDLLGRAG LEE+   I  
Sbjct: 572 VFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKD 631

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           MP  P+  IW+SLL ACR   NV++A  A + +    P   G++VLL+N+YA AGR +DM
Sbjct: 632 MPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 691

Query: 512 SRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-- 569
           +++R+ +++ GL+K  G S+I+  G  H+FTSGD  +P   +I  ML+E+       G  
Sbjct: 692 AKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHV 751

Query: 570 ------LQETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
                 L +   Q        H E+LA+AFGLIS+++ TTIRIV NLR+C  CHSF K  
Sbjct: 752 PDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFA 811

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           S+VYNREI++RDN RFH  + G+CSC D+
Sbjct: 812 SKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 126/262 (48%), Gaps = 34/262 (12%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           +N++I  Y S G+ +E + L  +M   G+SPD+ T    +S   K RD   G  +H  + 
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           +        + N LV  Y +CG++  A+K+    E+ E +VV WT+++ GY +     +A
Sbjct: 161 KMDYAKDLFVQNSLVHFYAECGELDCARKVFD--EMSERNVVSWTSMICGYARREFAKDA 218

Query: 281 RRLF-----DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
             LF     DE V  N ++   +IS            +CA +  L  G  V+ +I+ + I
Sbjct: 219 VDLFFRMVRDEDVIPNSVTMVCVIS------------ACAKLEDLETGEKVYDFIRDSGI 266

Query: 336 SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
            +++               I++A  LF E    N+ L  ++ + Y   G  ++A+ +   
Sbjct: 267 EVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNL 326

Query: 381 MEETGTKPDQVTFIALLSACSH 402
           M ++G +PD+++ ++ +S+CS 
Sbjct: 327 MMDSGIRPDRISMLSAISSCSQ 348



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           +++ S+I  YA +G  ++AI LF+ M  +G  PD+ TF   LS C+
Sbjct: 99  FMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCA 144


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/583 (34%), Positives = 328/583 (56%), Gaps = 65/583 (11%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           QI R G E ++ + N ++                        L  KCG++     +F +L
Sbjct: 198 QIFRHGFESDVFVQNGLV-----------------------ALYAKCGEIVRANAVFGRL 234

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
            +R ++SW ++IS Y   G   E L + S+M    V PD + +VS++ A T + DLE GK
Sbjct: 235 VDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGK 294

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
           ++H  + +  ++    LL  L  +Y KCG +  A+      +++   ++ W  ++SGYVK
Sbjct: 295 SIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFN--QVENPSLIFWNAMISGYVK 352

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
           +   +EA  LF  M  +N+   ++ ++  +         +CA IG+L    W+  YI  +
Sbjct: 353 NGYAEEAIELFRLMKSKNIRPDSITVTSSI--------AACAQIGSLELARWMDEYISMS 404

Query: 334 QISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           +   D               ++++A  +F  I +K+V +W++++  Y + G  +++I LF
Sbjct: 405 EFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILF 464

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
             M + G  P+ VTF+ LL+AC + GLV+EG+D L  + R Y I+P+ QHY C+VDLLGR
Sbjct: 465 HAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWD-LFHRMRDYGIEPRHQHYACVVDLLGR 523

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
           AGHL+ + NF+ +MPI P VS+W +LL AC+ H++V L E+A + L   DP N G +V L
Sbjct: 524 AGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQL 583

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
           +N+YA +   D ++++R+ +R+ GL K LGYS+IE  G +  F +GD  +P S+EI+  +
Sbjct: 584 SNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEV 643

Query: 559 NEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNL 602
            ++E  L++ G                 +ET   H ERLA+A+GLIST   TT+RI  NL
Sbjct: 644 EDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNL 703

Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R C +CH+ +K+ S++ +REIV+RD  RFH F+ G CSC DYW
Sbjct: 704 RACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 214/450 (47%), Gaps = 43/450 (9%)

Query: 105 KIWNSIIENQLINGYPQEVFAIYL--------YLVTRTVLLNKCGKLKEVC---QLFDKL 153
           K + S+I++ +   +  +++A  L        +L+ +  L+NK   + EV    +LFDK 
Sbjct: 76  KFYASLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAK--LVNKASNIGEVSCARKLFDKF 133

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P+ DV  WN ++ CY+  G +   + + ++M    VSPD  +   ++ A + L  LEMG+
Sbjct: 134 PDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGR 193

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +H  +     +    + N LV +Y KCG+I  A  + GR  +D   +V WT+++SGY +
Sbjct: 194 RVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL-VDRT-IVSWTSIISGYAQ 251

Query: 274 SNERDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
           + +  EA R+F EM + N+   W  ++S +         ++   +  L HG  +H  + K
Sbjct: 252 NGQPIEALRIFSEMRKTNVRPDWIALVSVL---------RAYTDVEDLEHGKSIHGCVIK 302

Query: 333 NQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
             +  +               ++ +A   F+++   ++  W ++I+ Y   G+A++AI+L
Sbjct: 303 MGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIEL 362

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F  M+    +PD +T  + ++AC+  G + E   ++ +   +   +  +     ++D   
Sbjct: 363 FRLMKSKNIRPDSITVTSSIAACAQIGSL-ELARWMDEYISMSEFRNDVIVNTSLIDTYA 421

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHV 496
           + G + + A F+       DV +WS+++     H   + +   F  + +     ND   V
Sbjct: 422 KCGSV-DMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFV 480

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
            L      +G +++   +  ++RD G++ +
Sbjct: 481 GLLTACKNSGLVEEGWDLFHRMRDYGIEPR 510


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 311/567 (54%), Gaps = 69/567 (12%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           QLFD +P   V SWN M   Y+ +   + G+ L  +M    V PD  T   L    T+  
Sbjct: 69  QLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSV 128

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ---------------KLLG 252
            L++G+ LH  + +  +  +    N L++MY  CG I  A+                ++ 
Sbjct: 129 ALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMIS 188

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA----- 307
            Y   + DV+ WT +V+G+V + + D AR+ F +M ER+ +SWT MI G L  +      
Sbjct: 189 GYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEAL 248

Query: 308 --------------EFKYKS----CASIGALYHGIWVHVYIKKNQISID----------- 338
                         EF   S    CA +GAL  G W+  YI KN++  D           
Sbjct: 249 MLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMY 308

Query: 339 ----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
               N+E+A  +F+ + +++ + WT+++   A+ G  ++A+++F +M +    PD+VT++
Sbjct: 309 FKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYV 368

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +LSAC+H G+VDEG  F +  +  + I+P + HYGCMVDLLG+AGHL+E+   I +MP+
Sbjct: 369 GVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPM 428

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            P+  +W +LL ACR H++ ++AE A + + E +P N   +VL  NIYA   + D +  +
Sbjct: 429 KPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLREL 488

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN--------------- 559
           R  + D G+KK  G SLIE  G VH+F +GD  +P ++EIY  LN               
Sbjct: 489 RQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNT 548

Query: 560 -EIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
            E+ + + ++  +    +H E+LA+AFGLI++    TIRIV NLR+C DCH   K+ S+V
Sbjct: 549 SEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKV 608

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
           Y+RE+++RD  RFH F+ G CSC+DYW
Sbjct: 609 YDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 185/427 (43%), Gaps = 72/427 (16%)

Query: 1   FTDRSVEPQLTETIFEPKLVRLGLVPK--MRISRKFANVCP---VSLDVIMVERSCSS-- 53
           F D     QL +TI EP +    ++ K   RI+      CP   VSL + M+ER+     
Sbjct: 61  FGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIA------CPKLGVSLYLEMLERNVKPDC 114

Query: 54  ------IDEFER---------IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
                    F R         +H H++   L  +      +       G +  A+ I   
Sbjct: 115 YTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDM 174

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
             + ++  WN+     +I+GY +    +  +    T  +N  G++    + F K+P RD 
Sbjct: 175 SCKSDVVTWNA-----MISGYNRIKKDVISWTAIVTGFVNT-GQVDAARKYFHKMPERDH 228

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           +SW  MI  Y  +  Y+E L L  +M    + PDE TMVS+++A  +L  LE+G+ +  +
Sbjct: 229 VSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTY 288

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           ++++ +K    + N L+DMYFKCG +  A  +     + + D   WT +V G   +   +
Sbjct: 289 IDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFN--TLPQRDKFTWTAMVVGLAINGCGE 346

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID 338
           EA  +F +M++ ++    +   G+L+        +C   G +  G       KK      
Sbjct: 347 EALNMFSQMLKASVTPDEVTYVGVLS--------ACTHTGMVDEG-------KK------ 385

Query: 339 NIELAYDLFSEIS-----EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                   F+ ++     E N+  +  ++     AGH ++A ++   M     KP+ + +
Sbjct: 386 -------FFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMP---MKPNSIVW 435

Query: 394 IALLSAC 400
            ALL AC
Sbjct: 436 GALLGAC 442



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  LF  I E +V+ W  +   Y+     +  + L+LEM E   KPD  T+  L    + 
Sbjct: 67  ARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTR 126

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
              +  G +      + Y +   +  +  ++++    G L + A  I  M    DV  W+
Sbjct: 127 SVALQLGRELHCHVVK-YGLDSNVFAHNALINMYSLCG-LIDMARGIFDMSCKSDVVTWN 184

Query: 463 SLL 465
           +++
Sbjct: 185 AMI 187


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/668 (33%), Positives = 352/668 (52%), Gaps = 82/668 (12%)

Query: 37  VCPVSLDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P    V  V  SC++   +D   +IHS ++   L     ++T +       GD   A+
Sbjct: 138 VPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAK 197

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
            +  +     I  WN++I                LY+        + G+ +     F+K+
Sbjct: 198 VVFDRMTVKNISTWNALIS---------------LYM--------QSGQFELAASQFEKM 234

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMG 212
           P+RD++SWN+MIS Y+  G   E L + SKM  E  + PD  T+ S++SA   L  L +G
Sbjct: 235 PDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIG 294

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K +H ++  +  + SG++ N L+ MY K G +  A+ ++       ++++ +T+L+ GY 
Sbjct: 295 KQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYT 354

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQDAEFKYKSCA- 315
           K      AR +F+++ +R++++WT MI G                M+N+  E    + A 
Sbjct: 355 KLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAA 414

Query: 316 ------SIGALYHGIWVHV-YIKKNQISID--------------NIELAYDLFS-EISEK 353
                 S+  L HG  +H   IK  + S                NI +A  +F     +K
Sbjct: 415 MLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKK 474

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
            +  WTS+I A A  G  ++AI+LF  M   G KPD +T++ +LSAC+H GLV++G  + 
Sbjct: 475 EIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYY 534

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           +  + V+ I+P + HY CM+DL GRAG L+E+  FI SMPI PD   W SLL +C+ H+N
Sbjct: 535 NMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKN 594

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
             LA+ A + L   DP N GA++ LAN+Y+  G+ ++ ++ R  ++D G++K+ G S I 
Sbjct: 595 ADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIH 654

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------QETSLQ----H 577
               VH F   D+ +P  +EIY ++ EI   +++ G             +E   Q    H
Sbjct: 655 IKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYH 714

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            E+LA+AFGL++T E T +RI+ NLR+C DCHS +K  S++  REI++RD  RFH F+ G
Sbjct: 715 SEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDG 774

Query: 638 QCSCRDYW 645
            CSCRDYW
Sbjct: 775 SCSCRDYW 782



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 119/563 (21%), Positives = 230/563 (40%), Gaps = 141/563 (25%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H  +I   L     +   +  F   TG L +A  +    DE  +K  ++   N LI+GY
Sbjct: 32  VHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF---DEMPLK--STFSWNTLISGY 86

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
            ++                  G  +   +L  ++P+ D +SW  +I  Y   G++   + 
Sbjct: 87  AKQ------------------GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE----STMKISGSLLNYLV 235
           + +KM +E V P + T+ +++S+    + L++G+ +H F+ +    S + ++ SLLN   
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN--- 185

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
            MY KCG    A+ +  R  +  +    W  L+S Y++S + + A   F++M +R+++SW
Sbjct: 186 -MYAKCGDPVIAKVVFDRMTVKNIST--WNALISLYMQSGQFELAASQFEKMPDRDIVSW 242

Query: 296 TLMISG----------------MLNQDA----EFKYKS----CASIGALYHGIWVHVYI- 330
             MISG                MLN+ +     F   S    CA++  L  G  +H YI 
Sbjct: 243 NSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYIL 302

Query: 331 -------------------------------KKNQIS----------------IDNIELA 343
                                          + N+ S                + N++ A
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPA 362

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
            ++F+++ +++V  WT++I  Y   G    A++LF  M   G +P+  T  A+LS  S  
Sbjct: 363 REIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSL 422

Query: 404 GLVDEGYDF----------------------------LSKKSRVYNI---KPKMQHYGCM 432
            +++ G                               ++   RV+++   K ++  +  M
Sbjct: 423 TILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSM 482

Query: 433 VDLLGRAGHLEESANF---ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           +  L + G  +E+ N    + S+ + PD   +  +L AC     V+     +  +TE   
Sbjct: 483 IMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHE 542

Query: 490 LND--GAHVLLANIYAKAGRLDD 510
           +      +  + ++Y +AG L +
Sbjct: 543 IEPTLSHYACMIDLYGRAGLLQE 565


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/687 (33%), Positives = 351/687 (51%), Gaps = 90/687 (13%)

Query: 12  ETIFEPKLV------RLGLVPKMRISRKFANVCPVSLDVI-------MVERSCSSID--- 55
           ETI EP L+      R   +    +S     VC +SL ++        + +SC+ +    
Sbjct: 61  ETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSK 120

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           E ++IH H++      D  + T +    V  G    A ++       ++  + +     L
Sbjct: 121 EGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTA-----L 175

Query: 116 INGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
           I GY                     G ++   ++FD++P +DV+SWN +IS Y   G  +
Sbjct: 176 ITGYASR------------------GYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNK 217

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           E L L  +M    V PDE TMV+++SA  +   +++G+ +H ++++  +  +  ++N L+
Sbjct: 218 EALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALI 277

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           D+Y KCG++  A  L     +   DV+ W T++ GY   N   EA  LF EM+       
Sbjct: 278 DLYSKCGEVETACGLF--QGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPN 335

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------- 339
            + +  +L         +CA +GA+  G W+HVYI K    + N                
Sbjct: 336 DVTMLSIL--------PACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCG 387

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            IE A+ +F+ +  + +    ++I  +AM G A  A D+F  M + G +PD +TF+ LLS
Sbjct: 388 DIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLS 447

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACSH G++D G       ++ Y I PK++HYGCM+DLLG  G  +E+   I +M + PD 
Sbjct: 448 ACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDG 507

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            IW SLL+AC+ H NV+L E   + L + +P N G++VLL+NIYA AGR ++++ IR  L
Sbjct: 508 VIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALL 567

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY--------------------LML 558
            D G+KK  G S IE    VH+F  GD F+P + EIY                     +L
Sbjct: 568 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627

Query: 559 NEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
            E+E   +Q  L+     H E+LA+AFGLIST   T + IV NLR+C +CH   K+ S++
Sbjct: 628 QEMEEEFKQGALR----HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKI 683

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
           Y REI+ RD  RFH F+ G CSC DYW
Sbjct: 684 YKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/566 (36%), Positives = 321/566 (56%), Gaps = 61/566 (10%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L K G L +   L    P R+VISW  +IS Y+  G   E +   + M ++G+ PDEVT+
Sbjct: 181 LAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTV 240

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL---LGR 253
           + L+SA  +L+DL  G++LH  + E  M +SG L+  L+DMY KCG IG A ++   LGR
Sbjct: 241 IGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGR 300

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEF 309
               +     W  ++ GY K    D AR LFD+M +R+L+++  +I+G ++    ++A  
Sbjct: 301 GRRPQS----WNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALL 356

Query: 310 KY-------------------KSCASIGALYHGIWVHVYIKKNQISID------------ 338
            +                    +CAS+GAL  G  +H  I++  + +D            
Sbjct: 357 LFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYL 416

Query: 339 ---NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
               +E A  +F  +S ++V+ W+++IA  A  G  + A++ F  M+  G +P+ VT+IA
Sbjct: 417 KCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIA 476

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           +L+ACSH  L+DEG  +  +   ++NI+P ++HYGCM+DLLGR+G L+E+ + + +MP+ 
Sbjct: 477 ILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQ 536

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
           P+  IW+S+L ACR H++  LA +A +HL + +P  D  +V L NIY  + + +D S+IR
Sbjct: 537 PNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIR 596

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS- 574
             + + G+KK  GYS I   G VHKF   D  +P   EI  M+ EI   L+  G    + 
Sbjct: 597 RLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITS 656

Query: 575 ---------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVY 619
                          L H E++A+AFGLIS +    + I+ NLR+C DCHS +K+ S+++
Sbjct: 657 QITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIW 716

Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
           NREI++RD  RFH F+ G CSC D+W
Sbjct: 717 NREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 124/302 (41%), Gaps = 47/302 (15%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR- 207
           LFD++P    +    + +C+ +       L L  +M   GV  D  T   L     + R 
Sbjct: 59  LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRA 118

Query: 208 DLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            + + + LH     + +  +  L+ N ++ MY + G  G+A++     +I   D V WTT
Sbjct: 119 HVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFD--DIPVKDAVAWTT 176

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQDAEFK 310
           ++SG  K    D+A  L      RN+ISWT +ISG                ML+   E  
Sbjct: 177 VISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPD 236

Query: 311 -------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                    +CA +  L  G  +H  + +  + +                +I  A+++F 
Sbjct: 237 EVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFD 296

Query: 349 EISE-KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
            +   +    W ++I  Y   GH   A  LF +ME+     D VTF +L++   HGG + 
Sbjct: 297 ALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDR----DLVTFNSLITGYIHGGRLR 352

Query: 408 EG 409
           E 
Sbjct: 353 EA 354


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/675 (32%), Positives = 344/675 (50%), Gaps = 85/675 (12%)

Query: 30  ISRKFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFT 86
           +S  FA   P    +  V  SC++++      ++H  ++   L     ++  V       
Sbjct: 339 VSEGFA---PSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKC 395

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
           GD   A+ +  +     +  WN ++                        L    G+++  
Sbjct: 396 GDAETARAVFERMQVRSVSSWNVMVS-----------------------LYTHQGRMELA 432

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISARTK 205
             +F+ +  R ++SWNT+I+ Y   G+    L   S+M  A  + PD  T+ S++SA   
Sbjct: 433 VSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACAN 492

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           LR L+MGK +H ++  + M  S  ++N L+  Y K G +  A++++ +  + +++V+ +T
Sbjct: 493 LRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFT 552

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDAEFKYKS-------- 313
            L+ GYVK  +  +AR +FD M  R++I+WT MI G      N +A   ++S        
Sbjct: 553 ALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEP 612

Query: 314 -----------CASIGALYHGIWVHV----YIKKNQISIDN-----------IELAYDLF 347
                      CAS+  L +G  +H      +++  +S+ N           + LA  +F
Sbjct: 613 NSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVF 672

Query: 348 SEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
            +I   K    WTS+I A A  G  ++A+ LF EM   G KPD +T++ +LSAC+H G V
Sbjct: 673 DQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFV 732

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           D+G  +  +    + I P+M HY CMVDL  RAG L E+  FI  MP+ PD  +W SLL 
Sbjct: 733 DKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLA 792

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           ACR  +N  LAE A   L   DP N GA+  LAN+Y+  GR +D +RI    +D G+KK+
Sbjct: 793 ACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKE 852

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------- 570
            G+S     G VH F + D+ +P  + IY    E+   +++ G                 
Sbjct: 853 TGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELK 912

Query: 571 QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           +E   +H E+LA+AFGLIST EKTT+RI+ NLR+C DCH+ +K  S+  +REI++RD  R
Sbjct: 913 EELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATR 972

Query: 631 FHRFQGGQCSCRDYW 645
           FH F+ G CSC+DYW
Sbjct: 973 FHHFRDGYCSCKDYW 987



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 146/356 (41%), Gaps = 76/356 (21%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G+L +   +F ++P+RD +SW  MI      G + + +     M +EG +P + T
Sbjct: 290 LYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFT 349

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + +++S+   +    +G+ +H F+ +  +     + N ++ MY KCG    A+ +  R +
Sbjct: 350 LTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQ 409

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA----EFKY 311
           +  V    W  +VS Y      + A  +F+ MVER+++SW  +I+G  NQ+       K+
Sbjct: 410 VRSVSS--WNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAG-YNQNGLDGMALKF 466

Query: 312 ---------------------KSCASIGALYHGIWVHVYIKKNQISID------------ 338
                                 +CA++  L  G  +H YI +  +               
Sbjct: 467 FSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYA 526

Query: 339 ---NIELAYDLFSE--ISEKNVYLWTSV-------------------------------I 362
              ++E A  +  +  +++ NV  +T++                               I
Sbjct: 527 KSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMI 586

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
             Y   G   +A++LF  M   G +P+  T  A+LSAC+    +D G     K  R
Sbjct: 587 VGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIR 642



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 130/347 (37%), Gaps = 81/347 (23%)

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGK----IGEAQKLLGRYEIDEVDVVLWTTL 267
           G+ +H    ++ + +S  L N L+  Y   G       EA+ L         +   W +L
Sbjct: 228 GRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSL 287

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF------------------ 309
           +S Y KS    +A  +F EM +R+ +SWT+MI G LN+   F                  
Sbjct: 288 LSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVG-LNRSGRFWDAVKTFLDMVSEGFAPS 346

Query: 310 ------KYKSCASIGALYHGIWVHVYIKKNQIS---------------IDNIELAYDLFS 348
                    SCA++ A   G  VH ++ K  +S                 + E A  +F 
Sbjct: 347 QFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFE 406

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            +  ++V  W  +++ Y   G  + A+ +F  M E       V++  +++  +  GL   
Sbjct: 407 RMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTIIAGYNQNGLDGM 462

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
              F S+                                 +++  + PD    +S+L AC
Sbjct: 463 ALKFFSR--------------------------------MLSASSMEPDAFTVTSVLSAC 490

Query: 469 RCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMSRI 514
              + +K+ +    ++  T  P +      L + YAK+G ++   RI
Sbjct: 491 ANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRI 537


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 313/569 (55%), Gaps = 56/569 (9%)

Query: 131 VTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
           V +   ++K G L    ++FDK+P+ D   +NT+   Y    + R  + + S+M  + VS
Sbjct: 58  VIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVS 117

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           P++ T   LI A      +E GK +H  + +      G  LN L+ MY     + +A+++
Sbjct: 118 PNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRV 177

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD---- 306
                + + DVV WT+L++GY +    D+AR +F+ M ERN +SW  MI+  +  +    
Sbjct: 178 FD--NMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHE 235

Query: 307 -------------------AEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-------- 339
                              A     +C  +GAL  G W+H YI+K+ I +D+        
Sbjct: 236 AFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVID 295

Query: 340 -------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  +E A ++F+E+ +K +  W  +I   AM G  + AI+LF EME     PD +T
Sbjct: 296 MYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGIT 355

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           F+ +LSAC+H GLV+EG  +    + V  +KP M+H+GCMVDLLGRAG LEE+   I  M
Sbjct: 356 FVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEM 415

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P+ PD  +  +L+ ACR H N +L E   K + E +P N G +VLLAN+YA AGR +D++
Sbjct: 416 PVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVA 475

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-- 570
           ++R  + D G+KK  G+S+IE    V +F +G   +P ++EIY  L+EI  T++  G   
Sbjct: 476 KVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVP 535

Query: 571 -------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
                        +E  L  H E+LA+AFGL+ T    T+RI  NLRIC DCH   K+ S
Sbjct: 536 DTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLIS 595

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +VY+REI+IRD  RFH F+ G CSC+DYW
Sbjct: 596 KVYDREIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/668 (33%), Positives = 352/668 (52%), Gaps = 82/668 (12%)

Query: 37  VCPVSLDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P    V  V  SC++   +D   +IHS ++   L     ++T +       GD   A+
Sbjct: 138 VPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAK 197

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
            +  +     I  WN++I                LY+        + G+ +     F+K+
Sbjct: 198 VVFDRMTVKNISTWNALIS---------------LYM--------QSGQFELAASQFEKM 234

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMG 212
           P+RD++SWN+MIS Y+  G   E L + SKM  E  + PD  T+ S++SA   L  L +G
Sbjct: 235 PDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIG 294

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K +H ++  +  + SG++ N L+ MY K G +  A+ ++       ++++ +T+L+ GY 
Sbjct: 295 KQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYT 354

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQDAEFKYKSCA- 315
           K      AR +F+++ +R++++WT MI G                M+N+  E    + A 
Sbjct: 355 KLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAA 414

Query: 316 ------SIGALYHGIWVHV-YIKKNQISID--------------NIELAYDLFS-EISEK 353
                 S+  L HG  +H   IK  + S                NI +A  +F     +K
Sbjct: 415 MLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKK 474

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
            +  WTS+I A A  G  ++AI+LF  M   G KPD +T++ +LSAC+H GLV++G  + 
Sbjct: 475 EIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYY 534

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           +  + V+ I+P + HY CM+DL GRAG L+E+  FI SMPI PD   W SLL +C+ H+N
Sbjct: 535 NMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKN 594

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
             LA+ A + L   DP N GA++ LAN+Y+  G+ ++ ++ R  ++D G++K+ G S I 
Sbjct: 595 ADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIH 654

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------QETSLQ----H 577
               VH F   D+ +P  +EIY ++ EI   +++ G             +E   Q    H
Sbjct: 655 IKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYH 714

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            E+LA+AFGL++T E T +RI+ NLR+C DCHS +K  S++  REI++RD  RFH F+ G
Sbjct: 715 SEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDG 774

Query: 638 QCSCRDYW 645
            CSCRDYW
Sbjct: 775 SCSCRDYW 782



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 119/563 (21%), Positives = 230/563 (40%), Gaps = 141/563 (25%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H  +I   L     +   +  F   TG L +A  +    DE  +K  ++   N LI+GY
Sbjct: 32  VHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF---DEMPLK--STFSWNTLISGY 86

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
            ++                  G  +   +L  ++P+ D +SW  +I  Y   G++   + 
Sbjct: 87  AKQ------------------GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE----STMKISGSLLNYLV 235
           + +KM +E V P + T+ +++S+    + L++G+ +H F+ +    S + ++ SLLN   
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN--- 185

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
            MY KCG    A+ +  R  +  +    W  L+S Y++S + + A   F++M +R+++SW
Sbjct: 186 -MYAKCGDPVIAKVVFDRMTVKNIST--WNALISLYMQSGQFELAASQFEKMPDRDIVSW 242

Query: 296 TLMISG----------------MLNQDA----EFKYKS----CASIGALYHGIWVHVYI- 330
             MISG                MLN+ +     F   S    CA++  L  G  +H YI 
Sbjct: 243 NSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYIL 302

Query: 331 -------------------------------KKNQIS----------------IDNIELA 343
                                          + N+ S                + N++ A
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPA 362

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
            ++F+++ +++V  WT++I  Y   G    A++LF  M   G +P+  T  A+LS  S  
Sbjct: 363 REIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSL 422

Query: 404 GLVDEGYDF----------------------------LSKKSRVYNI---KPKMQHYGCM 432
            +++ G                               ++   RV+++   K ++  +  M
Sbjct: 423 TILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSM 482

Query: 433 VDLLGRAGHLEESANF---ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           +  L + G  +E+ N    + S+ + PD   +  +L AC     V+     +  +TE   
Sbjct: 483 IMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHE 542

Query: 490 LND--GAHVLLANIYAKAGRLDD 510
           +      +  + ++Y +AG L +
Sbjct: 543 IEPTLSHYACMIDLYGRAGLLQE 565


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/721 (31%), Positives = 355/721 (49%), Gaps = 113/721 (15%)

Query: 35  ANVCPVSLDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
           AN+ P  +  + + ++C++   +++  +IH+ +    +  D  ++T +       G++  
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISV 210

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLN---- 138
           A ++  +  E  +  W +II+    +    E F +Y  +         VT   LLN    
Sbjct: 211 ACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNT 270

Query: 139 ----------------------------------KCGKLKEVCQLFDKLPNRDVISWNTM 164
                                             KC  ++E  ++FD++  RDVISW+ M
Sbjct: 271 PEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAM 330

Query: 165 ISCYTSMGMYR------EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           I+ Y   G Y+      E   LL +M  EGV P++VT +S++ A T    LE G+ +H  
Sbjct: 331 IAGYAQSG-YKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAE 389

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           L +   ++  SL   + +MY KCG I EA+++  +  +   +VV WT+ +S Y+K  +  
Sbjct: 390 LSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSK--MANKNVVAWTSFLSMYIKCGDLS 447

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKY-----------------------KSCA 315
            A ++F EM  RN++SW LMI+G        K                        ++C 
Sbjct: 448 SAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACG 507

Query: 316 SIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTS 360
           ++  L  G  VH    K  +  D +                 A  +F ++S ++   W +
Sbjct: 508 ALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNA 567

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++A Y   G   +A+DLF  M +    P+++T  A++SACS  GLV EG +        +
Sbjct: 568 MLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDF 627

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            + P+ QHYGCMVDLLGRAG L+E+  FI SMP  PD+S+W +LL AC+ H NV+LAE A
Sbjct: 628 KMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERA 687

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
             H+ E +P     ++ L+NIYA+AGR DD +++R  + D GLKK  G S IE  G +H 
Sbjct: 688 AHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHT 747

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVA 584
           F + D  +P  + I+  L  +   +++ G                +E +L  H E+LA+A
Sbjct: 748 FVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIA 807

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           +GL+ T   T IRI+ NLR+CGDCH+  K  S++  REIV RD  RFH F  G CSC D+
Sbjct: 808 YGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDF 867

Query: 645 W 645
           W
Sbjct: 868 W 868



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 176/354 (49%), Gaps = 37/354 (10%)

Query: 136 LLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
           L+N   K ++V    Q+F ++  RDV++W++MI+ Y       +      +M    + P+
Sbjct: 97  LINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPN 156

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
            +T +S++ A      LE G+ +H  ++   M+   ++   L+ MY KCG+I  A ++  
Sbjct: 157 RITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVF- 215

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
            +++ E +VV WT ++    +  + +EA  L+++M++  +    +    +LN        
Sbjct: 216 -HKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLN-------- 266

Query: 313 SCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYL 357
           SC +  AL  G  +H +I +  +  D               +++ A ++F  +S+++V  
Sbjct: 267 SCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVIS 326

Query: 358 WTSVIAAYAMAGHAQK-AID----LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           W+++IA YA +G+  K +ID    L   M   G  P++VTF+++L AC+  G +++G   
Sbjct: 327 WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQI 386

Query: 413 LSKKSRV-YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++ S+V + +   +Q    + ++  + G + E+    + M    +V  W+S L
Sbjct: 387 HAELSKVGFELDRSLQ--TAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFL 437



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/516 (20%), Positives = 197/516 (38%), Gaps = 113/516 (21%)

Query: 51  CSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIW 107
           C+    FE    +H  L    +  D  +   +  F     D+  A+Q+ R+    ++  W
Sbjct: 66  CAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTW 125

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTV-------------------------------- 135
           +S+I     N +P + F  +  +    +                                
Sbjct: 126 SSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKA 185

Query: 136 ---------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
                          + +KCG++   C++F K+  R+V+SW  +I          E   L
Sbjct: 186 MGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFEL 245

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             +M   G+SP+ VT VSL+++      L  G+ +H  + E  ++    + N L+ MY K
Sbjct: 246 YEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCK 305

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER-----DEARRLFDEMVERNLISW 295
           C  + EA+++  R  + + DV+ W+ +++GY +S  +     DE  +L + M    +   
Sbjct: 306 CNSVQEAREIFDR--MSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPN 363

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NI 340
            +    +L        ++C + GAL  G  +H  + K    +D               +I
Sbjct: 364 KVTFMSIL--------RACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSI 415

Query: 341 ELAYDLFSEISEKNVYLWTS-------------------------------VIAAYAMAG 369
             A  +FS+++ KNV  WTS                               +IA YA  G
Sbjct: 416 YEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNG 475

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
              K  +L   M+  G +PD+VT I +L AC     ++ G   +  ++    ++      
Sbjct: 476 DIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVA 534

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             ++ +  + G + E+      M    D   W+++L
Sbjct: 535 TSLIGMYSKCGQVAEARTVFDKMS-NRDTVAWNAML 569



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 132/332 (39%), Gaps = 73/332 (21%)

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G  RE + LL  +   G+  +  T   +I    K R  E GK +H  L+E          
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDE---------- 84

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
                              LG     E+D+ L  +L++ Y K  +   A ++F  M  R+
Sbjct: 85  -------------------LGV----EIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRD 121

Query: 292 LISWTLMISGMLNQDAEFK-----------------------YKSCASIGALYHGIWVHV 328
           +++W+ MI+     +   K                        K+C +   L  G  +H 
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHT 181

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            +K   +  D                I +A ++F +++E+NV  WT++I A A      +
Sbjct: 182 IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNE 241

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A +L+ +M + G  P+ VTF++LL++C+    ++ G    S  S    ++  M     ++
Sbjct: 242 AFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE-RGLETDMIVANALI 300

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            +  +   ++E+      M    DV  WS+++
Sbjct: 301 TMYCKCNSVQEAREIFDRMS-KRDVISWSAMI 331


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/677 (32%), Positives = 345/677 (50%), Gaps = 97/677 (14%)

Query: 52  SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII 111
           S +DE +RIH   +   L  D ++ T +    V  GD+  A+Q  +   + ++ ++N++I
Sbjct: 243 SMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALI 302

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNK-------------------------------- 139
                +G+  E F  Y  + +  V LN+                                
Sbjct: 303 AALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS 362

Query: 140 ---------------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
                          CG L +  +LF  +P RD+ISWN +I+ Y       E + L  +M
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
            +EGV P  VT + L+SA         GK +H  +  S +K +G L N L++MY +CG +
Sbjct: 423 QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMIS 300
            EAQ +    +    DV+ W ++++G+ +    + A +LF EM    +E + I++  ++S
Sbjct: 483 MEAQNVFEGTQAR--DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYD 345
           G            C +  AL  G  +H  I ++ + +D               +++ A +
Sbjct: 541 G------------CKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARN 588

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGG 404
           +F  +  ++V  WT++I   A  G   KAI+LF +M+  G +P D  TF ++LSAC+H G
Sbjct: 589 VFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAG 648

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           LV EGY   S     Y + P ++HYGC+V LLGRA   +E+   I  MP PPD ++W +L
Sbjct: 649 LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 708

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           L ACR H N+ LAEHA  +  + +  N   ++LL+N+YA AGR DD+++IR  +   G++
Sbjct: 709 LGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIR 768

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------- 570
           K+ G S IE    +H+F + D  +P + EIY  L  + + +++ G               
Sbjct: 769 KEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKA 828

Query: 571 -QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDN 628
            QETSL  H ERLA+A+GLI T   T IRI  NLRICGDCH+  K  S++  REI+ RD+
Sbjct: 829 HQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDS 888

Query: 629 GRFHRFQGGQCSCRDYW 645
            RFH F+ G+CSC DYW
Sbjct: 889 NRFHSFKNGKCSCEDYW 905



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/499 (21%), Positives = 211/499 (42%), Gaps = 77/499 (15%)

Query: 35  ANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
           A   P  +  I +  +C S  E E   +IHS +I     RDP++   +       GDL  
Sbjct: 122 AGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPR 181

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLN---- 138
           A+Q+       ++  +N+++       Y +E   ++  +         VT   LL+    
Sbjct: 182 ARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTT 241

Query: 139 ----------------------------------KCGKLKEVCQLFDKLPNRDVISWNTM 164
                                             +CG +    Q F  + +RDV+ +N +
Sbjct: 242 PSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNAL 301

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           I+     G   E      +M ++GV+ +  T +S+++A +  + LE GK +H  + E   
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
                + N L+ MY +CG + +A++L   Y + + D++ W  +++GY +  +R EA RL+
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELF--YTMPKRDLISWNAIIAGYARREDRGEAMRLY 419

Query: 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------ 338
            +M    +    +    +L+        +CA+  A   G  +H  I ++ I  +      
Sbjct: 420 KQMQSEGVKPGRVTFLHLLS--------ACANSSAYADGKMIHEDILRSGIKSNGHLANA 471

Query: 339 ---------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                    ++  A ++F     ++V  W S+IA +A  G  + A  LF EM+    +PD
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPD 531

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            +TF ++LS C +   ++ G     + +    ++  +     ++++  R G L+++ N  
Sbjct: 532 NITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 450 TSMPIPPDVSIWSSLLRAC 468
            S+    DV  W++++  C
Sbjct: 591 HSLQ-HRDVMSWTAMIGGC 608



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/502 (22%), Positives = 210/502 (41%), Gaps = 76/502 (15%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           + E +RIH+ ++   +  D  +S  +    V    +  A Q+ ++    ++  WNS+I  
Sbjct: 43  LPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISC 102

Query: 114 QLINGYPQEVFAI---------------YLYLVTRTV----------------------- 135
               G+ ++ F +               Y+ ++T                          
Sbjct: 103 YAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRD 162

Query: 136 ---------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                    +  KCG L    Q+F  +  RDV+S+NTM+  Y      +E LGL  +M +
Sbjct: 163 PRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSS 222

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           EG+SPD+VT ++L+ A T    L+ GK +H    E  +     +   LV M  +CG +  
Sbjct: 223 EGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDS 282

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A++      I + DVV++  L++   +     EA   +  M    +         +LN  
Sbjct: 283 AKQAF--KGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN-- 338

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +C++  AL  G  +H +I ++  S D               ++  A +LF  + 
Sbjct: 339 ------ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           ++++  W ++IA YA      +A+ L+ +M+  G KP +VTF+ LLSAC++     +G  
Sbjct: 393 KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-K 451

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            + +      IK        ++++  R G L E+ N         DV  W+S++     H
Sbjct: 452 MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMIAGHAQH 510

Query: 472 QNVKLAEHAFKHLT--ETDPLN 491
            + + A   F+ +   E +P N
Sbjct: 511 GSYETAYKLFQEMQNEELEPDN 532



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 162/359 (45%), Gaps = 30/359 (8%)

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T V+L+   T+ R L   K +H  + E+ +     L N L++MY KC  + +A ++ 
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
              E+   DV+ W +L+S Y +   + +A +LF+EM     I   +    +L        
Sbjct: 86  --KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILT------- 136

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVY 356
            +C S   L +G  +H  I K     D               ++  A  +F+ IS ++V 
Sbjct: 137 -ACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVV 195

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            + +++  YA   + ++ + LF +M   G  PD+VT+I LL A +   ++DEG   + K 
Sbjct: 196 SYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKL 254

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH-QNVK 475
           +    +   ++    +V +  R G ++ +      +    DV ++++L+ A   H  NV+
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIAALAQHGHNVE 313

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK--QLGYSLI 532
             E  ++  ++   LN   ++ + N  + +  L+    I   + + G     Q+G +LI
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALI 372


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/687 (31%), Positives = 345/687 (50%), Gaps = 82/687 (11%)

Query: 18  KLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQ 74
           ++ R G   KM +      + P    +  V  SC++ +      ++HS ++   L     
Sbjct: 139 RVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVP 198

Query: 75  ISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT 134
           ++  V       GD   A+ +  +  E  +  WN+++                       
Sbjct: 199 VANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVS---------------------- 236

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDE 193
            L    G++     LF+ +P+R ++SWN +I+ Y   G+  + L   S+M     ++PDE
Sbjct: 237 -LDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDE 295

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T+ S++SA   L  + +GK +H ++  S M   G + N L+ MY K G +  A+ ++ +
Sbjct: 296 FTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQ 355

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG------------ 301
             + +++V+ +T L+ GYVK  +   AR +FD M  R++++WT MI G            
Sbjct: 356 AVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAME 415

Query: 302 ----MLNQDAEFKYKS-------CASIGALYHGIWVHV----YIKKNQISIDN------- 339
               M+    E    +       CAS+  L +G  +H      +++   S+ N       
Sbjct: 416 LFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYA 475

Query: 340 ----IELAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
               +  A  +F  +   K    WTS+I A A  G  + A+ LF EM   G KPD++TF+
Sbjct: 476 RSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFV 535

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +LSAC+H G VDEG  +  +    + I P+M HY CMVDLL RAG   E+  FI  MP+
Sbjct: 536 GVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPV 595

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            PD   W SLL ACR H+N  LAE A + L   DP N GA+  L+N+Y+  GR +D ++I
Sbjct: 596 EPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKI 655

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---- 570
             + +D  +KK+ G+S    G  VH F + D+ +P  + +Y    ++   +++ G     
Sbjct: 656 WKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDL 715

Query: 571 ------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                       +E   +H E+LA+AFGL+ST EKTT+RI+ NLR+C DCH+ +K  S+V
Sbjct: 716 QSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKV 775

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +REI++RD  RFH F+ G CSC+DYW
Sbjct: 776 ADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 173/418 (41%), Gaps = 83/418 (19%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G+L +   +F ++P RD +SW  M+     +G + E + +   M  +G+SP + T
Sbjct: 105 LYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFT 164

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + +++S+        +G+ +H F+ +  +     + N +++MY KCG    A+ +  R  
Sbjct: 165 LTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFER-- 222

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA---- 307
           + E  V  W  +VS        D A  LF+ M +R ++SW  +I+G     LN  A    
Sbjct: 223 MPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFF 282

Query: 308 ------------EFKYKS----CASIGALYHGIWVHVYIKKNQI---------------- 335
                       EF   S    CA++G +  G  VH YI ++++                
Sbjct: 283 SRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAK 342

Query: 336 --SIDN------------------------------IELAYDLFSEISEKNVYLWTSVIA 363
             S++N                              ++ A ++F  +S ++V  WT++I 
Sbjct: 343 SGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIV 402

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y   GH  +A++LF  M  +G +P+  T  A+LS C+    ++ G     K  R    +
Sbjct: 403 GYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQ-E 461

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
                   +V +  R+G L  +      +    +   W+S++        V LA+H  
Sbjct: 462 QSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMI--------VALAQHGL 511



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 86/314 (27%)

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGK-----IGEAQKLLGRYEIDEVDVVLWTT 266
           G+ +H    ++ +  S  L N L+  Y            EA++L       + +V  W +
Sbjct: 42  GRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNS 101

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK---------------- 310
           L+S Y KS    +AR +F EM ER+ +SWT+M+ G LN+   F                 
Sbjct: 102 LLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVG-LNRVGRFGEAIKMFLDMVTDGLSP 160

Query: 311 --------YKSCASIGALYHGIWVHVYIKK------------------------------ 332
                     SCA+  A   G  VH ++ K                              
Sbjct: 161 TQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVF 220

Query: 333 ------------NQISID----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
                         +S+D     ++LA  LF  + ++ +  W +VIA Y   G   KA+ 
Sbjct: 221 ERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALW 280

Query: 377 LFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG----C 431
            F  M    T  PD+ T  ++LSAC++ G+V  G     K+   Y ++ +M + G     
Sbjct: 281 FFSRMLSYSTMAPDEFTITSVLSACANLGMVSIG-----KQVHAYILRSRMPYIGQVTNA 335

Query: 432 MVDLLGRAGHLEES 445
           ++ +  ++G +E +
Sbjct: 336 LISMYAKSGSVENA 349


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/661 (33%), Positives = 337/661 (50%), Gaps = 86/661 (13%)

Query: 19  LVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQ 78
           ++ LGLVP           C  S           +  E ++IH H++      D  + T 
Sbjct: 94  MISLGLVPNSYTFPFLLKACAKS----------KAFREGQQIHGHVLKLGCDLDLYVHTS 143

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN 138
           +    V  G    A+++  Q    ++  + ++I+    NGY                   
Sbjct: 144 LIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGY------------------- 184

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
               +    ++FD++P +DV+SWN +IS Y   G Y+E L L  +M    V PDE TMV+
Sbjct: 185 ----IXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVT 240

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-ID 257
           ++SA  +   +E+G+ +H ++++     +  ++N L+D+Y KCG++  A    G +E + 
Sbjct: 241 VLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAS---GLFEGLS 297

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
             DV+ W TL+ GY   N   EA  LF EM+        + +  +L         +CA +
Sbjct: 298 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSIL--------PACAHL 349

Query: 318 GALYHGIWVHVYIKKNQISIDN-----------------IELAYDLFSEISEKNVYLWTS 360
           GA+  G W+HVYI K    + N                 IE A  +F  +  +++  W +
Sbjct: 350 GAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNA 409

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I  +AM G A  A D+F  M + G +PD +TF+ LLSACSH G++D G       +  Y
Sbjct: 410 MIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDY 469

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I PK++HYGCM+DLLG +G  +E+   I SM + PD  IW SLL+AC+ H NV+L E  
Sbjct: 470 KITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESF 529

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            ++L + +P N G++VLL+NIYA AGR +++++ R  L D G+KK  G S IE    VH+
Sbjct: 530 AQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHE 589

Query: 541 FTSGDIFNPHSEEIY--------------------LMLNEIEMTLQQQGLQETSLQHRER 580
           F  GD  +P + EIY                     +L E+E   ++  L+     H E+
Sbjct: 590 FIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALR----HHSEK 645

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFGLIST   T + IV NLR+C +CH   K+ S++Y REI+ RD  RFH F  G CS
Sbjct: 646 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCS 705

Query: 641 C 641
           C
Sbjct: 706 C 706


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/696 (33%), Positives = 352/696 (50%), Gaps = 86/696 (12%)

Query: 1   FTDRSVEPQLTETIFEPKLV------RLGLVPKMRISRKFANVCPVSLDVI-------MV 47
           F   S    + ETI EP L+      R   +    ++     VC +SL ++        +
Sbjct: 12  FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFL 71

Query: 48  ERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEI 104
            +SC+   ++ E ++IH H++      D  ++T +       G L  A ++  +     +
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 105 KIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164
             + +     LI GY                     G +    +LFD++  +DV+SWN M
Sbjct: 132 VSYTA-----LITGYASR------------------GYINNARKLFDEISVKDVVSWNAM 168

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           IS Y     ++E L L   M    V PDE TMV+++SA  +   +E+G+ LH ++E+   
Sbjct: 169 ISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGF 228

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
             +  ++N L+D+Y KCG++  A  L     + + DV+ W TL+ G+   N   EA  LF
Sbjct: 229 GSNIKIVNVLIDLYSKCGEVETACGLF--QGLAKKDVISWNTLIGGHTHMNLYKEALLLF 286

Query: 285 DEMVERNLISWTLMISGMLNQDAEF--KYKSCASIGALYHGIWVHVYIKKNQISIDN--- 339
            EM+           SG    D        +CA +GA+  G W+HVYI K    + N   
Sbjct: 287 QEMLR----------SGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASS 336

Query: 340 --------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
                         IE A  +F  +  +++  W ++I  +AM G A  A DLF +M + G
Sbjct: 337 LLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG 396

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
             PD +TF+ LLSACSH G++D G       S+ Y I PK++HYGCM+DLLG  G  +E+
Sbjct: 397 IDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEA 456

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
              I +MP+ PD  IW SLL+AC+ H NV+L E   ++L + +P N G++VLL+NIYA A
Sbjct: 457 KEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATA 516

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML------- 558
           GR D +++IR  L D G+KK  G S IE    VH+F  GD F+P + EIY ML       
Sbjct: 517 GRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLM 576

Query: 559 ---------NEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
                    +E+   ++++  +     H E+LA+AFGLIST   T + IV NLR+C +CH
Sbjct: 577 EETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 636

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              K+ S++Y REI+ RD  R H  + G  SC DYW
Sbjct: 637 EATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/542 (38%), Positives = 302/542 (55%), Gaps = 57/542 (10%)

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK-LRDLEMGKNLHL 217
           ++WN +IS +   G + E  G    M   G +P  VT VS++SA  K  RD+ +G  +H 
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
            +  S +     + N LVDMY +C  +G A K+    ++  V  V WT+L+SG  +  + 
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSV--VSWTSLLSGLARLGQV 205

Query: 278 DEARRLFDEMVERNLISWTLMISG---------MLNQDAEFKYK--------------SC 314
           DEAR LFD M ER+ +SWT MI G          L    E +Y               +C
Sbjct: 206 DEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITAC 265

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
           A +GAL  G WV VY+ +  I +D               +IE A D+F  +  ++ + WT
Sbjct: 266 AQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWT 325

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I   A+ G+ ++AI++F  M      PD+VTFI +L+AC+H GLVD+G +F       
Sbjct: 326 AIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEA 385

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           YNI P + HYGC++DLLGRAG + E+ + I  MP+ P+ +IW +LL ACR H N ++ E 
Sbjct: 386 YNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGEL 445

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
             + L E DP N   ++LL+NIYAK  R +D+ R+R  + + G+KK+ G SLIE  G +H
Sbjct: 446 VAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIH 505

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAV 583
           +F +GD  +P S+EIY  L  I   L   G                 ++    H E+LA+
Sbjct: 506 EFVAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAI 565

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AF L+S+   T IRIV NLR+C DCH+ +K+ S++Y RE+V+RD  RFH F+ G CSC+D
Sbjct: 566 AFALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKD 625

Query: 644 YW 645
           YW
Sbjct: 626 YW 627


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/670 (33%), Positives = 354/670 (52%), Gaps = 84/670 (12%)

Query: 36  NVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           +V P    +  V  SC++++      ++HS ++   L     ++  +      +GD   A
Sbjct: 140 DVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTA 199

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL-FD 151
           + +  +        WN++I + + +G                        L ++ Q+ F+
Sbjct: 200 KIVFDRMKLKSTSSWNTMISSHMQSG------------------------LVDLAQVQFE 235

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKLRDLE 210
           ++  RDV+SWN MIS Y   G  RE L + SKM  +  S PD+ T+ S +SA   L +L+
Sbjct: 236 QMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLK 295

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +GK +H  +  +     G++ N L+ MY K G +  AQK++ +  I  +DV+ +T L+ G
Sbjct: 296 LGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDG 355

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGML----NQDAEFKYKSCASIGA------- 319
           YVK  + + ARR+FD +  R++++WT MI G +    NQDA   ++S    G        
Sbjct: 356 YVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTL 415

Query: 320 ------------LYHGIWVHVYIKKN----QISIDN-----------IELAYDLFSEIS- 351
                       L HG  +H    ++     +S+ N           I  A  +F+ I  
Sbjct: 416 ATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHW 475

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +++   WTS+I A A  G  ++A+ LF  M E G KPD +T++ +LSAC+H GLV++G  
Sbjct: 476 KRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRS 535

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           + +     + I P   HY CM+DL GRAG L+E+  FI +MPI PDV  W SLL +C+ H
Sbjct: 536 YYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVH 595

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           +NV+LAE A + L   +P N GA+  LAN+Y+  G+ ++ + IR  ++D G+KK  G+S 
Sbjct: 596 KNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSW 655

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------------LQETSL- 575
           ++    VH F   D  +P  + IY M+ +I   +++ G               L+E  L 
Sbjct: 656 VQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILS 715

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LA+AFGLI T E TT+RI+ NLR+C DCHS +K  S++  REI++RD  RFH F+
Sbjct: 716 HHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFK 775

Query: 636 GGQCSCRDYW 645
            G CSCRDYW
Sbjct: 776 NGLCSCRDYW 785



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/500 (21%), Positives = 207/500 (41%), Gaps = 102/500 (20%)

Query: 47  VERSCSSIDEF--ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEI 104
           ++RS    D F  + IH+ +I   L     +   +  F   TG +  A ++  +     +
Sbjct: 20  LQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSV 79

Query: 105 KIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164
             WN I+     +GY                   K G+L+E  ++F+++P  D +SW  M
Sbjct: 80  FSWNIIL-----SGYA------------------KGGRLEEAHRVFEEMPEPDSVSWTAM 116

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           I  Y  MG +   +G+  +M ++ V P + T+ +++++   +  L +G+ +H F+ +  +
Sbjct: 117 IVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGL 176

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
               S+ N L++MY K G    A+ +  R ++       W T++S +++S   D A+  F
Sbjct: 177 SSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSS--WNTMISSHMQSGLVDLAQVQF 234

Query: 285 DEMVERNLISWTLMISGMLNQ----------------DAEFK---------YKSCASIGA 319
           ++M+ER+++SW  MISG  NQ                D+  K           +CA++  
Sbjct: 235 EQMIERDVVSWNAMISG-YNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLEN 293

Query: 320 LYHGIWVHVYIKKNQI----SIDN-----------IELAYDLF--SEISEKNVYLWTSV- 361
           L  G  +H +I + +     ++ N           +E+A  +   S IS  +V  +T++ 
Sbjct: 294 LKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353

Query: 362 ------------------------------IAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                                         I  Y   G  Q A++LF  M + G KP+  
Sbjct: 354 DGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNY 413

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           T   +LS  S    +D G    +  +R  N    +     ++ +  ++G + ++      
Sbjct: 414 TLATMLSVSSSLASLDHGRQIHASATRSGN-ASSVSVSNALITMYAKSGSINDARWVFNL 472

Query: 452 MPIPPDVSIWSSLLRACRCH 471
           +    D   W+S++ A   H
Sbjct: 473 IHWKRDTITWTSMIIALAQH 492



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 84/345 (24%)

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            S +    K +D   GK++H  + ++ + +   L+N L++ Y K G I +A ++     +
Sbjct: 17  TSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPV 76

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------ 310
               V  W  ++SGY K    +EA R+F+EM E + +SWT MI G  NQ  +F+      
Sbjct: 77  KS--VFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVG-YNQMGQFENAIGMF 133

Query: 311 ------------------YKSCASIGALYHGIWVHVYIKKNQ----ISIDN--------- 339
                               SCA++  L  G  VH ++ K+     IS+ N         
Sbjct: 134 REMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKS 193

Query: 340 ---------------------------------IELAYDLFSEISEKNVYLWTSVIAAYA 366
                                            ++LA   F ++ E++V  W ++I+ Y 
Sbjct: 194 GDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYN 253

Query: 367 MAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
             G  ++A+D+F +M  ++ +KPD+ T  + LSAC++   +      L K+   + I+ +
Sbjct: 254 QHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLK-----LGKQIHAHIIRTE 308

Query: 426 MQHYG----CMVDLLGRAGHLEESANFI-TSMPIPPDVSIWSSLL 465
              +G     ++ +  ++G +E +   I  SM    DV  +++LL
Sbjct: 309 FDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 42/232 (18%)

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           V L   L++ Y K+    +A R+FDEM  +++ SW +++SG                   
Sbjct: 48  VFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSG------------------- 88

Query: 321 YHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
                   Y K  ++     E A+ +F E+ E +   WT++I  Y   G  + AI +F E
Sbjct: 89  --------YAKGGRL-----EEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFRE 135

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLL 436
           M      P Q T   +L++C+    +  G     +K   + +K  +  Y      ++++ 
Sbjct: 136 MVSDDVPPTQFTLTNVLASCAAVECLGIG-----RKVHSFVVKHGLSSYISVANSLLNMY 190

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
            ++G    +      M +    S W++++ +      V LA+  F+ + E D
Sbjct: 191 AKSGDPVTAKIVFDRMKL-KSTSSWNTMISSHMQSGLVDLAQVQFEQMIERD 241


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/646 (34%), Positives = 341/646 (52%), Gaps = 65/646 (10%)

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           E +++H+H++      D  +   +        ++  A ++  +    +   WNSI+   +
Sbjct: 231 EAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYI 290

Query: 116 INGYPQEVFAIYLYLVTRT--------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
             G  +E   IY  +  R+        VL    G + E C+LFD++  +D+++W+ +I+C
Sbjct: 291 EIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIAC 350

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
           +    MY E +     M   GV  DEV  VS +SA   L  + MGK +H    +   +  
Sbjct: 351 FQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY 410

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            +L N L+ MY KCG I  A+KL     +  +D++ W +++SGY+K N  D A+ +FD M
Sbjct: 411 INLQNALIYMYSKCGDIMVARKLFDEAYL--LDLISWNSMISGYLKCNLVDNAKAIFDSM 468

Query: 288 VERNLISWTLMISGMLNQD--------------AEFK---------YKSCASIGALYHGI 324
            E++++SW+ MISG    D              + FK           +CA + AL  G 
Sbjct: 469 PEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 528

Query: 325 WVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
           WVH YIK+N ++I+ I               E A ++F  + EK +  W ++I   AM G
Sbjct: 529 WVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNG 588

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
             + ++D+F  M++    P+++TF+ +L AC H GLVDEG          + I+P ++HY
Sbjct: 589 LVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHY 648

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GCMVDLLGRAG L+E+   +  MP+ PDV+ W +LL AC+ H + ++     + L E  P
Sbjct: 649 GCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQP 708

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            +DG HVLL+NIYA  G+ DD+  IR  +    + K  G S+IE  G +H+F +GD  +P
Sbjct: 709 DHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHP 768

Query: 550 HSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEK 593
             + I  ML E+ M L+ +G                 + T  +H E+LA+AFGLI+ S  
Sbjct: 769 DMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPP 828

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF-QGGQ 638
           T IRI+ NLRIC DCH+  K+ S+ + R+IV+RD  RFH F QGGQ
Sbjct: 829 TPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQGGQ 874


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/683 (33%), Positives = 352/683 (51%), Gaps = 82/683 (12%)

Query: 12  ETIFEPK------LVRLGLVPKMRISRKFANVCPVSLDVI-------MVERSCS---SID 55
           ETI EP       ++R   +    +S     VC VSL ++        + +SC+   +  
Sbjct: 22  ETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFT 81

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           E ++IH  ++      D  + T +    V    L  A ++  +    ++  + +     L
Sbjct: 82  EGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTA-----L 136

Query: 116 INGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
           I GY                     G ++   +LFD++P +DV+SWN MIS Y   G Y+
Sbjct: 137 ITGYASR------------------GDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYK 178

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           E L L  +M    V PDE T V+++SA      +E+G+ +H ++++     +  ++N L+
Sbjct: 179 EALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALI 238

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           D+Y KCG++  A  L     +   DV+ W TL+ GY   N   EA  LF EM+       
Sbjct: 239 DLYSKCGEVETACGLF--QGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 296

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------- 339
            + +  +L         +CA +GA+  G W+HVYI K    + N                
Sbjct: 297 DVTMLSVL--------PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCG 348

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            IE A+ +F+ +  K++  W ++I  +AM G A  + DLF  M + G +PD +TF+ LLS
Sbjct: 349 DIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLS 408

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACSH G++D G       ++ Y + PK++HYGCM+DLLG +G  +E+   I +M + PD 
Sbjct: 409 ACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG 468

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            IW SLL+AC+ H NV+LAE   ++L + +P N  +++LL+NIYA AGR +D++RIR  L
Sbjct: 469 VIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALL 528

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML----------------NEIE 562
               +KK  G S IE    V +F  GD F+P + EIY ML                +E+ 
Sbjct: 529 NGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVL 588

Query: 563 MTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
             ++++  +     H E+LA+AFGLIST   T + IV NLR+C +CH   K+ S++Y RE
Sbjct: 589 QEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKRE 648

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           IV RD  RFH F+ G CSC DYW
Sbjct: 649 IVARDRTRFHHFRDGVCSCNDYW 671



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 194/462 (41%), Gaps = 52/462 (11%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L     +F+ +   + + WNTMI  +         L L   M + G+ P+  T   L+ +
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
             K +    G+ +H  + +    +   +   L+ MY +  ++ +A K+  R      DVV
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSS--HRDVV 131

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-------------------ML 303
            +T L++GY    +   A++LFDE+  ++++SW  MISG                   M 
Sbjct: 132 SYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMN 191

Query: 304 NQDAEFKY----KSCASIGALYHGIWVHVYIKKN----QISIDN-----------IELAY 344
            +  E  Y     +CA  G++  G  VH ++  +     + I N           +E A 
Sbjct: 192 VRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETAC 251

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF  +S K+V  W ++I  Y      ++A+ LF EM  +G  P+ VT +++L AC+H G
Sbjct: 252 GLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLG 311

Query: 405 LVDEG-YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
            +D G +  +    R+  +         ++D+  + G +E +     SM +   +S W++
Sbjct: 312 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNA 370

Query: 464 LLRACRCHQNVKLAEHAFKHLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
           ++     H     +   F  + +   +P +D   V L +  + +G LD    I    R M
Sbjct: 371 MIFGFAMHGRADASFDLFSRMRKIGIEP-DDITFVGLLSACSHSGMLDLGRHI---FRSM 426

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
               ++   L   G  +       +F    E    M+N +EM
Sbjct: 427 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE----MINTMEM 464


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/557 (37%), Positives = 326/557 (58%), Gaps = 66/557 (11%)

Query: 149 LFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           LF+K  ++ +V SWN++I+     G   E L   S M    + P+  T    I + + L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 208 DLEMGKNLH----LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
           DL  G+  H    +F  E  + +S +L    VDMY KCG++ +A+ L    EI   ++V 
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSAL----VDMYSKCGELRDARTLFD--EISHRNIVS 144

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS-----GM----------LNQDAE 308
           WT++++GYV++++   A R+FD M ER++ISW  +I+     GM          + +D E
Sbjct: 145 WTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE 204

Query: 309 FKYKS---------CASIGALYHGIWVH-----------VYIKKNQISI----DNIELAY 344
             Y +         CA  G+   G  +H           V++  + I +      +E+A 
Sbjct: 205 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMAR 264

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
             F  + EKNV  W++++A Y M GHA++A+++F EM   G KP+ +TF+++L+ACSH G
Sbjct: 265 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 324

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           L++EG+ +    S  ++++P ++HYGCMVDLLGRAG+L+E+ + I  M + PD  +W +L
Sbjct: 325 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 384

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           L ACR H+NV L E + + L E DP N G +VLL+NIYA AGR +D+ R+R+ +++ GL 
Sbjct: 385 LGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLV 444

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------- 570
           K  G+SL++  G VH F  GD  +P  E+IY  L ++ M LQ+ G               
Sbjct: 445 KPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHE 504

Query: 571 -QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDN 628
            +E  L+ H E+LAVAFG+++T   TTI I+ NLR+CGDCH+ +K  S++ +REIV+RD+
Sbjct: 505 EKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDS 564

Query: 629 GRFHRFQGGQCSCRDYW 645
            RFH F+ G CSC DYW
Sbjct: 565 KRFHHFRDGLCSCGDYW 581



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 10/154 (6%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCGK++   + FD++  ++V SW+ M++ Y   G  +E L +  +M   GV P+ +T VS
Sbjct: 256 KCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVS 315

Query: 199 LISARTKLRDLEMGKNLHLFLEES-TMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYE 255
           +++A +    LE G   H F   S    +   + +Y  +VD+  + G + EA  L+   +
Sbjct: 316 VLAACSHAGLLEEG--WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMK 373

Query: 256 IDEVDVVLWTTLVSGYVKSNERD----EARRLFD 285
           +   D V+W  L+         D     AR+LF+
Sbjct: 374 L-RPDFVVWGALLGACRMHKNVDLGEISARKLFE 406


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/673 (32%), Positives = 346/673 (51%), Gaps = 90/673 (13%)

Query: 52  SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII 111
           S +   + IH+ L+   L  D  +  +V  F    G+  Y+ +I+ Q  EP I ++N++I
Sbjct: 21  SCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMI 80

Query: 112 ENQLINGYPQEVFAIY------------------LYLVTRTV------------------ 135
              ++N   QE   IY                  L    R +                  
Sbjct: 81  RGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCE 140

Query: 136 -----------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
                      L  KCG +    ++FD +P+++  SW   IS Y  +G  RE + +  ++
Sbjct: 141 ADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRL 200

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
              G+ PD  ++V ++SA  +  DL  G+ +  ++ E+ M  +  +   LVD Y KCG +
Sbjct: 201 LEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNM 260

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
             A+ +     + E ++V W++++ GY  +    EA  LF +M+   L      + G+L 
Sbjct: 261 ERARSVFD--GMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLC 318

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN----------------IELAYDLFS 348
                   SCA +GAL  G W    I  N+  +DN                ++ A+++F 
Sbjct: 319 --------SCARLGALELGDWASNLINGNEF-LDNSVLGTALIDMYAKCGRMDRAWEVFR 369

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            + +K+  +W + I+  AM+GH + A+ LF +ME++G KPD+ TF+ LL AC+H GLV+E
Sbjct: 370 GMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEE 429

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G  + +    V+ + P+++HYGCMVDLLGRAG L+E+   I SMP+  +  +W +LL  C
Sbjct: 430 GRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGC 489

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H++ +L E   K L   +P + G +VLL+NIYA + + ++ ++IR  + + G+KK  G
Sbjct: 490 RLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPG 549

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ------------ 576
           YS IE  G VH+F  GD  +P SE+IY  L E+   L+  G   T+              
Sbjct: 550 YSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEH 609

Query: 577 ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
               H E+LAVAFGLIST+    I +V NLR+CGDCH  +K  S++  REI++RDN RFH
Sbjct: 610 FIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFH 669

Query: 633 RFQGGQCSCRDYW 645
            F  G CSC+DYW
Sbjct: 670 CFTDGLCSCKDYW 682



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 178/406 (43%), Gaps = 41/406 (10%)

Query: 111 IENQLINGYP-----QEVFA--IYLYLVTRTVLLNKC-------GKLKEVCQLFDKLPNR 156
           I+N+LI G+      + + A  + L L   T LLNK        G      ++ D+    
Sbjct: 12  IKNRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEP 71

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
           ++  +NTMI        ++E + +   M  EG+SPD  T   ++ A  ++ D E+G  +H
Sbjct: 72  NIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMH 131

Query: 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
             + ++  +    +   L+++Y KCG I  A K+    +I + +   WT  +SGYV   +
Sbjct: 132 SLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFD--DIPDKNFASWTATISGYVGVGK 189

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI- 335
             EA  +F  ++E  L   +  +  +L+        +C   G L  G W+  YI +N + 
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLS--------ACKRTGDLRSGEWIDEYITENGMV 241

Query: 336 --------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
                            N+E A  +F  + EKN+  W+S+I  YA  G  ++A+DLF +M
Sbjct: 242 RNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKM 301

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
              G KPD    + +L +C+  G ++ G D+ S                 ++D+  + G 
Sbjct: 302 LNEGLKPDCYAMVGVLCSCARLGALELG-DWASNLINGNEFLDNSVLGTALIDMYAKCGR 360

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           ++ +      M    D  +W++ +       +VK A   F  + ++
Sbjct: 361 MDRAWEVFRGMR-KKDRVVWNAAISGLAMSGHVKDALGLFGQMEKS 405


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 319/570 (55%), Gaps = 64/570 (11%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            + ++CG+L    ++F+++  R+  SWN+MI  Y   G  +E L L  +M   G+ PD  +
Sbjct: 523  MYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFS 582

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            + S++S+   L D + G+ LH F+  +TM+  G L   LVDMY KCG +  A K+    +
Sbjct: 583  LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYD--Q 640

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-------------- 301
              + DV+L   +VS +V S   ++A+ LFD+M +RN   W  +++G              
Sbjct: 641  TIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHF 700

Query: 302  --MLNQDAEFKYKS-------CASIGALYHGIWVH-VYIKKNQISID------------- 338
              ML  D E+   +       C+S+ AL HG  +H + IKK  ++               
Sbjct: 701  LEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSK 760

Query: 339  --NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
               I  A  +F  ++ KN+  W ++I+ Y+  G +++A+ L+ EM + G  P++VTF+A+
Sbjct: 761  CGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAI 820

Query: 397  LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
            LSACSH GLV+EG    +     YNI+ K +HY CMVDLLGRAG LE++  F+  MPI P
Sbjct: 821  LSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEP 880

Query: 457  DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
            +VS W +LL ACR H+++ +   A + L E DP N G +V+++NIYA AGR  ++  IR 
Sbjct: 881  EVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQ 940

Query: 517  KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---QET 573
             ++  G+KK  G S IE    +  F +G   +P +EEIY  L    +TLQ +GL    +T
Sbjct: 941  MMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLR--HLTLQSKGLGYIPDT 998

Query: 574  S------------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
            S                  LQH ERLA++ GLIS  +K+TIR+  NLRICGDCH+  K  
Sbjct: 999  SFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFI 1058

Query: 616  SQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S++  R I+ RD  RFH F+ G+CSC DYW
Sbjct: 1059 SKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 175/393 (44%), Gaps = 58/393 (14%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC   +   ++FD++  R+ ++WN++IS     G + + L L  +M   G   +   + S
Sbjct: 323 KCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGS 382

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A   L D+  G+ LH  L  + +     L + LVDMY KCG + EA ++     + E
Sbjct: 383 ILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVF--RSLLE 440

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM-----VERNLISWTLMISGMLNQDAEFKYKS 313
            + V +  L++GYV+  + +EA  L+ +M     ++ +  ++T +++   NQ  + +   
Sbjct: 441 RNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQ--- 497

Query: 314 CASIGALYHGIWVHVYIKKNQI----------SIDNIELAYDLFSEISEKNVYLWTSVIA 363
               G   H   +   I KN I              +  A ++F+ ++E+N Y W S+I 
Sbjct: 498 ----GRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIE 553

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC---SHGGLVDEGYDFLSKKS--- 417
            Y   G  Q+A+ LF +M+  G KPD  +  ++LS+C   S      E ++F+ + +   
Sbjct: 554 GYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEE 613

Query: 418 ----------------------RVYN--IKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
                                 +VY+  IK  +     MV     +G   ++ N    M 
Sbjct: 614 EGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQME 673

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
              + ++W+S+L     + N  L + +F H  E
Sbjct: 674 -QRNTALWNSILAG---YANKGLKKESFNHFLE 702



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 201/466 (43%), Gaps = 70/466 (15%)

Query: 111 IENQLI-NGYPQEVFAIYLYLVTRTVLL-NKCGKLKEVC---QLFDKLPNRDVISWNTMI 165
           I  Q+I NGY  +      YL+T+ ++L  + G L ++C   +LF+++P R++ +WNTMI
Sbjct: 93  IHTQMISNGYNPDA-----YLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMI 147

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
             Y  +  Y E L L  +M   G   D+ T  S+I A   + D+   + L   + ++ + 
Sbjct: 148 LAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLN 207

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  +   LVD Y + G + +A   L   EI+   VV W  +++GYVK    +EA  +FD
Sbjct: 208 CNLFVGGALVDGYARFGWMDDAVTSLD--EIEGTSVVTWNAVIAGYVKILSWEEAWGIFD 265

Query: 286 EMVERNL------ISWTLMISGML-----NQDAEFKYKSCASIGALYHG-IWVHVYIKKN 333
            M++  +       +  L + G L      +    K  +C   G  + G   + +Y K  
Sbjct: 266 RMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAK-- 323

Query: 334 QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
               D+ E    +F E+ E+N   W S+I+A A  GH   A+ LFL M+E+G K ++   
Sbjct: 324 ---CDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNL 380

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSM 452
            ++L A +  GL D G         V N+       G  +VD+  + G +EE+     S+
Sbjct: 381 GSILMASA--GLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSL 438

Query: 453 -----------------------------------PIPPDVSIWSSLLRACRCHQNVKLA 477
                                               I PD   +++LL  C   +N    
Sbjct: 439 LERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQG 498

Query: 478 EHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMSRI--RMKLRD 520
                HL   +   N      L ++Y++ GRL+    I  RM  R+
Sbjct: 499 RQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERN 544



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 128/615 (20%), Positives = 238/615 (38%), Gaps = 143/615 (23%)

Query: 37  VCPVSLDVIMVERSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           VCP +       R C ++   D  +++HS LI      D  +   + +      D     
Sbjct: 272 VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCL 331

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL----------------------- 130
           ++  +  E     WNSII  +   G+  +   ++L +                       
Sbjct: 332 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLA 391

Query: 131 -----------VTRTVL-------------LNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
                      + R +L              +KCG ++E  Q+F  L  R+ +S+N +++
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451

Query: 167 CYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
            Y   G   E L L   M +E G+ PD+ T  +L++     R+   G+ +H  L  + + 
Sbjct: 452 GYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANIT 511

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  +   LV MY +CG++  A+++  R  + E +   W +++ GY ++ E  EA RLF 
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNR--MAERNAYSWNSMIEGYQQNGETQEALRLFK 569

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI---------- 335
           +M    +      +S ML+        SC S+     G  +H +I +N +          
Sbjct: 570 QMQLNGIKPDCFSLSSMLS--------SCVSLSDSQKGRELHNFIVRNTMEEEGILQVVL 621

Query: 336 --------SIDNIELAYD----------------------------LFSEISEKNVYLWT 359
                   S+D     YD                            LF ++ ++N  LW 
Sbjct: 622 VDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWN 681

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDE 408
           S++A YA  G  +++ + FLEM E+  + D +T + +++ CS           H  ++ +
Sbjct: 682 SILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKK 741

Query: 409 GY------------DFLSK-----KSRVY--NIKPK-MQHYGCMVDLLGRAGHLEESANF 448
           G+            D  SK     K+R    N+  K +  +  M+    + G  +E+   
Sbjct: 742 GFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALIL 801

Query: 449 ITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA--HVLLANIYA 503
              MP   + P+   + ++L AC     V+     F  + E   +   A  +  + ++  
Sbjct: 802 YEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLG 861

Query: 504 KAGRLDDMSRIRMKL 518
           +AGRL+D      K+
Sbjct: 862 RAGRLEDAKEFVEKM 876



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 137/654 (20%), Positives = 258/654 (39%), Gaps = 124/654 (18%)

Query: 31  SRKFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTG 87
           ++  ++V P+    ++  + C   + F+R   IH+ +I+     D  + T++      +G
Sbjct: 63  TKPASDVNPLPYSSLI--QDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSG 120

Query: 88  ---DLGYAQQIIRQGDEPEIKIWNS-IIENQLINGYPQEVFAIYLYL------------- 130
              DL YA+++  +  E  +  WN+ I+    ++ Y  EV  +Y  +             
Sbjct: 121 CLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDY-MEVLRLYGRMRGSGNFSDKFTFP 179

Query: 131 --VTRTVLLNKCGKLKEV----------CQLF----------------------DKLPNR 156
             +   + +   G ++++          C LF                      D++   
Sbjct: 180 SVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGT 239

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
            V++WN +I+ Y  +  + E  G+  +M   GV PD  T  S +     LR  + GK +H
Sbjct: 240 SVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVH 299

Query: 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
             L     K    + N L+DMY KC       K+    E+ E + V W +++S   +   
Sbjct: 300 SKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFD--EMGERNQVTWNSIISAEAQFGH 357

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
            ++A  LF  M E    S    +  +L   A       A IG    G  +H ++ +N ++
Sbjct: 358 FNDALVLFLRMQESGYKSNRFNLGSILMASAGL-----ADIGK---GRELHGHLVRNLLN 409

Query: 337 IDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
            D I               E A+ +F  + E+N   + +++A Y   G A++A++L+ +M
Sbjct: 410 SDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDM 469

Query: 382 E-ETGTKPDQVTFIALLSACSHGGLVDEGYDF---------------------------- 412
           + E G +PDQ TF  LL+ C++    ++G                               
Sbjct: 470 QSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 529

Query: 413 LSKKSRVYNIKPKMQHY--GCMVDLLGRAGHLEESANFITSMP---IPPDVSIWSSLLRA 467
           L+    ++N   +   Y    M++   + G  +E+      M    I PD    SS+L +
Sbjct: 530 LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 589

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGA-HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           C    + +        +       +G   V+L ++YAK G +D       K+ D  +KK 
Sbjct: 590 CVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMD----YAWKVYDQTIKKD 645

Query: 527 LGYSLIEQGGFVHKFTSGD---IFNPHSEEIYLMLNEIEMTLQQQGLQETSLQH 577
           +  + +    FV+   + D   +F+   +    + N I      +GL++ S  H
Sbjct: 646 VILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNH 699


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/541 (36%), Positives = 311/541 (57%), Gaps = 41/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG L++  ++FD +P+++V+SW  +IS Y  +G +RE + +  ++    ++PD  T
Sbjct: 156 LYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFT 215

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V ++SA T+L DL  G+ +H  + E  M  +  +   LVDMY KCG + +A+ +     
Sbjct: 216 IVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFD--G 273

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + E D+V W  ++ GY  +    EA  LF +M   N+      + G+L+        +CA
Sbjct: 274 MPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLS--------ACA 325

Query: 316 SIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTS 360
            +GAL  G WV   + +N+                   ++  A+++F  + EK+  +W +
Sbjct: 326 RLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNA 385

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+  AM G+ + +  LF ++E+ G KPD  TFI LL  C+H GLVDEG  + +   R +
Sbjct: 386 IISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFF 445

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           ++ P ++HYGCMVDLLGRAG L+E+   I +MP+  +  +W +LL ACR H++ +LAE A
Sbjct: 446 SLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELA 505

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K L E +P N G +VLL+NIY+   + D+ +++R+ + +  ++K  G S IE  G VH+
Sbjct: 506 LKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHE 565

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQHRERLAVA 584
           F  GD ++P SE+IY  L+E+   ++  G   T+                  H E+LA+A
Sbjct: 566 FLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIA 625

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLIS +    IR+V NLR+CGDCH  +K+ S +  REI +RDN RFH F+ G CSC DY
Sbjct: 626 FGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDY 685

Query: 645 W 645
           W
Sbjct: 686 W 686



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 171/363 (47%), Gaps = 33/363 (9%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LF ++   ++  WNTMI    S   + + +     M +EG  P+  T   ++ A  +L D
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L++G  +H  + +        +   LV +Y KCG + +A K+    +I + +VV WT ++
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFD--DIPDKNVVSWTAII 185

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH- 327
           SGY+   +  EA  +F  ++E NL   +  I  +L+        +C  +G L  G W+H 
Sbjct: 186 SGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLS--------ACTQLGDLNSGEWIHK 237

Query: 328 ----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
                     V++  + + +     N+E A  +F  + EK++  W ++I  YA+ G  ++
Sbjct: 238 CIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKE 297

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYG 430
           AIDLFL+M+    KPD  T + +LSAC+  G ++ G      + +   +YN  P +    
Sbjct: 298 AIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYN--PVLGT-- 353

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
            ++DL  + G +  +      M    D  +W++++     +  VK++   F  + +    
Sbjct: 354 ALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIK 412

Query: 491 NDG 493
            DG
Sbjct: 413 PDG 415



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/291 (18%), Positives = 119/291 (40%), Gaps = 62/291 (21%)

Query: 36  NVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           N+ P S  ++ V  +C+ + +    E IH  ++   ++R+  + T + +     G++  A
Sbjct: 208 NLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKA 267

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------------------- 130
           + +     E +I  W ++I+   +NG P+E   ++L +                      
Sbjct: 268 RSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARL 327

Query: 131 ----------------------VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMI 165
                                 V  T L++   KCG +    ++F  +  +D + WN +I
Sbjct: 328 GALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAII 387

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK----NLHLFLEE 221
           S     G  +   GL  ++   G+ PD  T + L+   T    ++ G+    +++ F   
Sbjct: 388 SGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFS- 446

Query: 222 STMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
               ++ S+ +Y  +VD+  + G + EA +L+    + E + ++W  L+  
Sbjct: 447 ----LTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPM-EANAIVWGALLGA 492


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 328/565 (58%), Gaps = 43/565 (7%)

Query: 114 QLINGYPQ-EVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
           ++I+ Y Q + F + + L T  + +  KCG ++   ++FD++  ++VISW+ MI+ Y   
Sbjct: 151 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 210

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G  R+ L L   M + G+ PD++T+ SL+ A + L++L+MG+ +H  + +  + +   + 
Sbjct: 211 GQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVC 270

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
             LVDMY KC +I +A+ L  +  + E D+V WT ++ GY +    +E+  LFD+M E  
Sbjct: 271 AALVDMYGKCREIEDARFLFDK--MPERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 328

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI----------- 340
           ++   + +  ++         +CA +GA++    +  YI++ +  +D I           
Sbjct: 329 VVPDKVAMVTVVF--------ACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 380

Query: 341 ----ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
               E A ++F  + EKNV  W+++IAAY   G  +KA+DLF  M  +G  P+++T ++L
Sbjct: 381 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 440

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L ACSH GLV+EG  F S     Y+++  ++HY C+VDLLGRAG L+E+   I SM +  
Sbjct: 441 LYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEK 500

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
           D  +W + L ACR H++V LAE A   L E  P N G ++LL+NIYA AGR +D+++ R 
Sbjct: 501 DEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRD 560

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL 575
            +    LKK  G++ IE     H+F+ GD  +P S+EIY ML  +   L+  G + +T+ 
Sbjct: 561 LMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNF 620

Query: 576 ---------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                           H E+LA+AFGLI+T E T IRI+ NLR+CGDCH+F K+ S +  
Sbjct: 621 VLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITG 680

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           R I++RD  RFH F+ G CSC DYW
Sbjct: 681 RVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 170/347 (48%), Gaps = 33/347 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC ++++   LFDK+  RD+++W  MI  Y   G   E L L  KM  EGV PD+V MV+
Sbjct: 77  KCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVT 136

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  KL  +   + +  +++    ++   L   ++DMY KCG +  A+++  R E  E
Sbjct: 137 VVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME--E 194

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +V+ W+ +++ Y    +  +A  LF  M+   ++   + ++ +L         +C+ + 
Sbjct: 195 KNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY--------ACSDLK 246

Query: 319 ALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIA 363
            L  G  +H  + K  + +D+               IE A  LF ++ E+++  WT +I 
Sbjct: 247 NLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIG 306

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY---DFLSKKSRVY 420
            YA  G+A +++ LF +M E G  PD+V  + ++ AC+  G + +     D++ +K    
Sbjct: 307 GYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL 366

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           ++         M+D+  + G +E +      M    +V  WS+++ A
Sbjct: 367 DVILGTA----MIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAA 408



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 148/342 (43%), Gaps = 77/342 (22%)

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           M+  +  +G Y    G   ++   G  PD  T+  +I A   L++L+MG+ +H  + +  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           + +   +   LVDMY                                 VK  E ++AR L
Sbjct: 61  LDLDHFVCAALVDMY---------------------------------VKCREIEDARFL 87

Query: 284 FDEMVERNLISWTLMISGM---------------LNQDAEFKYK--------SCASIGAL 320
           FD+M ER+L++WT+MI G                + ++     K        +CA +GA+
Sbjct: 88  FDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAM 147

Query: 321 YHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAY 365
           +    +  YI++ +  +D I               E A ++F  + EKNV  W+++IAAY
Sbjct: 148 HKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY 207

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
              G  +KA+DLF  M  +G  PD++T  +LL ACS    +  G         VY     
Sbjct: 208 GYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLI---HHIVYKFGLD 264

Query: 426 MQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           + H+ C  +VD+ G+   +E++      MP   D+  W+ ++
Sbjct: 265 LDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMI 305


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/568 (35%), Positives = 345/568 (60%), Gaps = 42/568 (7%)

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT-- 169
           +  LI G+  ++F +   LV    + +KCG+L++   LFD++ +R+++SW +MI+ Y   
Sbjct: 176 QQALIFGFEPDLF-VSSALVD---MYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231

Query: 170 -----SMGMYREGLGLLSKMGAEG---VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
                ++ +++E L  + + G+EG   V  D + MVS++SA +++ +  + + +H FL +
Sbjct: 232 DDAHRALLLFKEFL--VEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIK 289

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
              +    + N L+D Y KCG++G ++++     + E DV+ W ++++ Y ++    E+ 
Sbjct: 290 RGFEGDLGVENTLMDAYAKCGELGVSRRVFD--GMAERDVISWNSIIAVYAQNGMSTESM 347

Query: 282 RLFDEMVERNLISW-TLMISGML---NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337
            +F  MV+   I++  + +S +L         +   C     +  G+  +V++  + I +
Sbjct: 348 EIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDM 407

Query: 338 ----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                 +E+A   F  + EKNV  W++++A Y M GHA++A+++F EM   G KP+ +TF
Sbjct: 408 YCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITF 467

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           +++L+ACSH GL++EG+ +    S  ++++P ++HYGCMVDLLGRAG+L+E+ + I  M 
Sbjct: 468 VSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMK 527

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           + PD  +W +LL ACR H+NV L E + + L E DP N G +VLL+NIYA AGR +D+ R
Sbjct: 528 LRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVER 587

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--- 570
           +R+ +++ GL K  G+SL++  G VH F  GD  +P  E+IY  L ++ M LQ+ G    
Sbjct: 588 MRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPD 647

Query: 571 ------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
                       +E  L+ H E+LAVAFG+++T   TTI I+ NLR+CGDCH+ +K  S+
Sbjct: 648 MTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISK 707

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + +REIV+RD+ RFH F+ G CSC DYW
Sbjct: 708 IVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 5/174 (2%)

Query: 346 LFSEISEK-NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
           LF++  +K NV+ W SVIA  A +G + +A+  F  M +   KP++ TF   + +CS   
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCS--A 164

Query: 405 LVD-EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           L+D        +++ ++  +P +     +VD+  + G L ++      +     VS W+S
Sbjct: 165 LLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVS-WTS 223

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
           ++     + +   A   FK     +  ++G   +  +  A    L   SR+  K
Sbjct: 224 MITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEK 277


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/668 (32%), Positives = 340/668 (50%), Gaps = 82/668 (12%)

Query: 37  VCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           + P    +  V  SC++ +      ++HS +I   L     ++  V       GD   A+
Sbjct: 159 LAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETAR 218

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
            +  +        WN+++                        L    G++     +F+ +
Sbjct: 219 AVFERMKVRSESSWNAMVS-----------------------LYTHQGRMDLALSMFENM 255

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMG 212
             R ++SWN +I+ Y   G+    L   S+M  A  + PDE T+ S++SA   LR L+MG
Sbjct: 256 EERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMG 315

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K +H ++  + M  S  ++N L+  Y K G +  A++++ +  + +++V+ +T L+ GYV
Sbjct: 316 KQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYV 375

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGM----LNQDAEFKYKS--------------- 313
           K  +  +AR +FD M  R++I+WT MI G      N +A   ++S               
Sbjct: 376 KLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAA 435

Query: 314 ----CASIGALYHGIWVHVY----IKKNQISIDN-----------IELAYDLFSEIS-EK 353
               CAS+  L +G  +H      +++  +S+ N           + LA  +F +I   K
Sbjct: 436 VLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRK 495

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
               WTS+I A A  G  ++AI LF EM   G KPD+VT+I + SAC+H G +D+G  + 
Sbjct: 496 ETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYY 555

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
            +    + I P+M HY CMVDLL RAG L E+  FI  MP+ PD  +W SLL ACR  +N
Sbjct: 556 EQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKN 615

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
             LAE A + L   DP N GA+  LAN+Y+  GR +D +RI    +D  +KK+ G+S   
Sbjct: 616 ADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTH 675

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQH 577
               VH F + D+ +P  + I     E+   +++ G                 +E   +H
Sbjct: 676 VQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRH 735

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            E+LA+AFGLIST EKTT+RI+ NLR+C DCH+ +K  S+V +REI++RD  RFH F+ G
Sbjct: 736 SEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDG 795

Query: 638 QCSCRDYW 645
            CSC+DYW
Sbjct: 796 YCSCKDYW 803



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 162/416 (38%), Gaps = 95/416 (22%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTG-DLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           IH+H +   L+    +   +  +    G   G   +  R  D+      N+   N L++ 
Sbjct: 47  IHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLSM 106

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           Y                   K G+L +   +F ++P RD +SW  M+      G + + +
Sbjct: 107 YA------------------KSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAV 148

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
                M  EG++P +  + +++S+        +G+ +H F+ +  +     + N ++ MY
Sbjct: 149 KTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMY 208

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KCG    A+ +  R ++       W  +VS Y      D A  +F+ M ER+++SW  +
Sbjct: 209 GKCGDAETARAVFERMKVRSESS--WNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAI 266

Query: 299 ISGMLNQDA---------------------EFKYKS----CASIGALYHGIWVHVYIKK- 332
           I+G  NQ+                      EF   S    CA++  L  G  +H YI + 
Sbjct: 267 IAG-YNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRT 325

Query: 333 -------------------------------------NQIS----------IDNIELAYD 345
                                                N IS          + + + A +
Sbjct: 326 GMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQARE 385

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           +F  ++ ++V  WT++I  Y   G   +A++LF  M  +G +P+  T  A+LSAC+
Sbjct: 386 VFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACA 441


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 314/551 (56%), Gaps = 45/551 (8%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L   T LLN    CG LK    LF+++ +R+ + W +MIS Y       E L L  KM  
Sbjct: 114 LYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEE 173

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           +G SPDEVTM +L+SA  +L+DL +G  LH  + E  MKI   L + LV+MY KCG +  
Sbjct: 174 DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKT 233

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE-RNLISWTLMISGMLNQ 305
           A+++  +  + + DV  W+ L+ GYVK+N   EA +LF E+    N+    + I  +++ 
Sbjct: 234 ARQVFDK--LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS- 290

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQ----ISIDN-----------IELAYDLFSEI 350
                  +CA +G L  G WVH YI + Q    +S++N           I+ A  +F  +
Sbjct: 291 -------ACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSM 343

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
           S K++  W S++  +A+ G  ++A+  F  M+ T  +PD++TFI +L+ACSH GLV EG 
Sbjct: 344 SYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGK 403

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
               +   +Y ++ K +HYGCMVDLL RAG L E+  FI  MP+ PD +IW S+L ACR 
Sbjct: 404 KLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRV 463

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           + N++L E A + L + +P NDG ++LL+NIYAK    +++ ++R  + + G++K  G S
Sbjct: 464 YNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCS 523

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETS 574
            +      H F +GD  +P   EI +ML ++   L+  G                 +E+ 
Sbjct: 524 SVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESV 583

Query: 575 LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
            QH E+LA+ +GL+ +     I I+ NLR+C DCH+ +K+ S++Y R+I +RD  RFH F
Sbjct: 584 SQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHF 643

Query: 635 QGGQCSCRDYW 645
           + G CSCRDYW
Sbjct: 644 KDGSCSCRDYW 654



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 142/337 (42%), Gaps = 37/337 (10%)

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
           LN L+      G +G            E+DV+ W +++  +V SN    A + + EM+ER
Sbjct: 13  LNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLER 72

Query: 291 NLISWTLMISGMLNQDAEFKY----KSCA-----SIGALYHGIWVH------VYIKKNQI 335
           +            N    F +    K CA      +G + HG  V       +YI+   +
Sbjct: 73  S-----------RNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLL 121

Query: 336 SI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
           ++     +++ A  LF  +  +N  +WTS+I+ Y       +A+ L+ +MEE G  PD+V
Sbjct: 122 NMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEV 181

Query: 392 TFIALLSACSHGGLVDEGYDF-LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           T   L+SAC+   L D G    L    R  ++K        +V++  + G L+ +     
Sbjct: 182 TMATLVSACAE--LKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            +    DV  WS+L+     +     A   F+ +     +      +LA I A A +L D
Sbjct: 240 KLS-DKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACA-QLGD 297

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS-GDI 546
           +   R  + D   + Q G+S+      +  F+  GDI
Sbjct: 298 LETGRW-VHDYITRTQKGHSVSLNNSLIDMFSKCGDI 333


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/722 (31%), Positives = 355/722 (49%), Gaps = 111/722 (15%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
           K AN+ P  +  + + ++C++    E+   IH+ +  + +  D  ++T +       G++
Sbjct: 171 KDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEI 230

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLN-- 138
             A +I ++  E  +  W +II+    +    E F +Y  +         VT   LLN  
Sbjct: 231 SLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290

Query: 139 ------------------------------------KCGKLKEVCQLFDKLPNRDVISWN 162
                                               KC  +++  + FD++  RDVISW+
Sbjct: 291 NTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWS 350

Query: 163 TMISCYTSMGMY-REGLG----LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
            MI+ Y   G   +E L     LL +M  EGV P++VT +S++ A +    LE G+ +H 
Sbjct: 351 AMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHA 410

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
            + +   +   SL   + +MY KCG I EA+++  + E    +VV W +L++ Y+K  + 
Sbjct: 411 EISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME--NKNVVAWASLLTMYIKCGDL 468

Query: 278 DEARRLFDEMVERNLISWTLMISGMLNQDAEFKY-----------------------KSC 314
             A ++F EM  RN++SW LMI+G        K                        ++C
Sbjct: 469 TSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEAC 528

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIEL---------------AYDLFSEISEKNVYLWT 359
            ++ AL  G  VH    K  +  D +                 A  +F +IS ++   W 
Sbjct: 529 GALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWN 588

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           +++A Y   G   +A+DLF  M +    P+++TF A++SAC   GLV EG +        
Sbjct: 589 AMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQED 648

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           + +KP  QHYGCMVDLLGRAG L+E+  FI  MP  PD+S+W +LL AC+ H NV+LAE 
Sbjct: 649 FRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEW 708

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A  H+   +P N   +V L+NIYA+AGR DD +++R  + D GLKK  G S IE  G +H
Sbjct: 709 AAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIH 768

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAV 583
            F + D  +P  + I+  L  +   +++ G                +E +L  H E+LA+
Sbjct: 769 TFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAI 828

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           A+GL+ T   T IRI+ NLR+CGDCH+  K  S++  REIV RD  RFH F+ G CSC D
Sbjct: 829 AYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGD 888

Query: 644 YW 645
           +W
Sbjct: 889 FW 890



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 213/458 (46%), Gaps = 40/458 (8%)

Query: 124 FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
            AI +YL    +   +K G +  V Q+F ++  RDV++W++MI+ Y       +      
Sbjct: 109 LAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFE 168

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           +M    + P+ +T +S++ A      LE  + +H  ++ S M+   ++   L+ MY KCG
Sbjct: 169 RMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCG 228

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
           +I  A ++  +  + E +VV WT ++    +  + +EA  L+++M++  +    +    +
Sbjct: 229 EISLACEIFQK--MKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSL 286

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLF 347
           LN        SC +  AL  G  +H +I +  +  D                I+ A + F
Sbjct: 287 LN--------SCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETF 338

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQK-----AIDLFLEMEETGTKPDQVTFIALLSACSH 402
             +S+++V  W+++IA YA +G+  K        L   M   G  P++VTF+++L ACS 
Sbjct: 339 DRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSV 398

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            G +++G    ++ S+V   +        + ++  + G + E+    + M    +V  W+
Sbjct: 399 HGALEQGRQIHAEISKV-GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWA 456

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI--RMKLRD 520
           SLL       ++  AE  F  ++  + ++   ++++A  YA++G +  +  +   MK+  
Sbjct: 457 SLLTMYIKCGDLTSAEKVFSEMSTRNVVS--WNLMIAG-YAQSGDIAKVFELLSSMKVEG 513

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
               +    S++E  G +     G +   H+E + L L
Sbjct: 514 FQPDRVTIISILEACGALSALERGKLV--HAEAVKLGL 549



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 178/460 (38%), Gaps = 111/460 (24%)

Query: 51  CSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIW 107
           C+ +  FE    +H  L    L  D  +   +  F    GD+   +Q+ R+    ++  W
Sbjct: 88  CAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTW 147

Query: 108 NSIIENQLINGYPQEVFAIY---------------------------------LYLVTRT 134
           +S+I     N +P + F  +                                 ++ V + 
Sbjct: 148 SSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKA 207

Query: 135 --------------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
                          + +KCG++   C++F K+  R+V+SW  +I          E   L
Sbjct: 208 SGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFEL 267

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             KM   G+SP+ VT VSL+++      L  G+ +H  + E  ++    + N L+ MY K
Sbjct: 268 YEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCK 327

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER-----DEARRLFDEMVERNLISW 295
           C  I +A++   R  + + DV+ W+ +++GY +S  +     DE  +L + M    +   
Sbjct: 328 CNCIQDARETFDR--MSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPN 385

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----------------- 338
            +    +L        K+C+  GAL  G  +H  I K     D                 
Sbjct: 386 KVTFMSIL--------KACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSI 437

Query: 339 -----------------------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
                                        ++  A  +FSE+S +NV  W  +IA YA +G
Sbjct: 438 YEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSG 497

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
              K  +L   M+  G +PD+VT I++L AC     ++ G
Sbjct: 498 DIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG 537



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 119/253 (47%), Gaps = 25/253 (9%)

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G  +E + LL  +   G+  +  T   +I    KLR  E GK +H  L+E  + I   L 
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L++ Y K G +   +++  R  +   DVV W+++++ Y  +N   +A   F+ M + N
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLR--DVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------------- 338
           +    +    +L        K+C +   L     +H  +K + +  D             
Sbjct: 175 IEPNRITFLSIL--------KACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSK 226

Query: 339 --NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
              I LA ++F ++ E+NV  WT++I A A      +A +L+ +M + G  P+ VTF++L
Sbjct: 227 CGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSL 286

Query: 397 LSACSHGGLVDEG 409
           L++C+    ++ G
Sbjct: 287 LNSCNTPEALNRG 299


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 309/548 (56%), Gaps = 47/548 (8%)

Query: 133 RTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           RT LL+   KCG LK+  ++F+K+  ++V++WN MI+ Y     Y   L     +  EG+
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            P+  T  S+++       LE+GK +H  + ++ ++    + N LV M+  CG +  A+ 
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           L    ++ + D+V W T+++G+V+  +   A   F  M E  +    +  +G+LN     
Sbjct: 571 LFN--DMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLN----- 623

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKN 354
              +CAS  AL  G  +H  I +     D               +IE A+ +F ++ +KN
Sbjct: 624 ---ACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN 680

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-YDFL 413
           VY WTS+IA YA  G  ++A++LF +M++ G KPD +TF+  LSAC+H GL++EG + F 
Sbjct: 681 VYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQ 740

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           S K   +NI+P+M+HYGCMVDL GRAG L E+  FI  M + PD  +W +LL AC+ H N
Sbjct: 741 SMKE--FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLN 798

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
           V+LAE A +   E DP ++G  V+L+NIYA AG   +++++R  + D G+ K+ G S IE
Sbjct: 799 VELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIE 858

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQH 577
             G VH F S D  +P +EEI+  L  + M ++Q G                 ++    H
Sbjct: 859 VDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYH 918

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            ERLA+ +GL+ T   T I I  NLR+CGDCH+  K  S++  R+I+ RD+ RFH F+ G
Sbjct: 919 SERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDG 978

Query: 638 QCSCRDYW 645
            CSC D+W
Sbjct: 979 VCSCGDFW 986



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 113/494 (22%), Positives = 210/494 (42%), Gaps = 78/494 (15%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           ERI++H+  + +  D  +   +       G+   A+QI     E ++  WN ++   + +
Sbjct: 130 ERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189

Query: 118 GYPQEVFAIY---------------------------------LY-----------LVTR 133
           G  +E F ++                                 LY           L   
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
           T L+N   KCG + +  ++FD LP RD+++W +MI+     G +++   L  +M  EGV 
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD+V  VSL+ A      LE GK +H  ++E        +   ++ MY KCG + +A ++
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                +   +VV WT +++G+ +    DEA   F++M+E  +    +    +L       
Sbjct: 370 FDL--VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILG------ 421

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNV 355
             +C+S  AL  G  +  +I +     D+               ++ A+ +F +IS++NV
Sbjct: 422 --ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--YDFL 413
             W ++I AY        A+  F  + + G KP+  TF ++L+ C     ++ G    FL
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFL 539

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
             K+    ++  +     +V +    G L  + N    MP   D+  W++++     H  
Sbjct: 540 IMKA---GLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGK 595

Query: 474 VKLAEHAFKHLTET 487
            ++A   FK + E+
Sbjct: 596 NQVAFDYFKMMQES 609



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 170/371 (45%), Gaps = 41/371 (11%)

Query: 70  MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN--QLINGYPQEVFAIY 127
           ++D Q +  V   L   G    A Q++ + D   I+I+        QL   +        
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 128 LY-----------LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173
           +Y           +  R  L+N   KCG      Q+FD +  +DV SWN ++  Y   G+
Sbjct: 132 IYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 174 YREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY 233
           Y E   L  +M  + V PD+ T VS+++A    R+++ G+ L+  + ++       +   
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           L++M+ KCG IG+A K+     +   D+V WT++++G  +     +A  LF  M E  + 
Sbjct: 252 LINMHIKCGDIGDATKVFD--NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH-----------VYIKKNQISI----D 338
              +    +L        ++C    AL  G  VH           +Y+    +S+     
Sbjct: 310 PDKVAFVSLL--------RACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCG 361

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           ++E A ++F  +  +NV  WT++IA +A  G   +A   F +M E+G +P++VTF+++L 
Sbjct: 362 SMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILG 421

Query: 399 ACSHGGLVDEG 409
           ACS    +  G
Sbjct: 422 ACSSPSALKRG 432



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 123/301 (40%), Gaps = 62/301 (20%)

Query: 19  LVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQ 78
           L++ G+ P         NVC          +S  S++  + +H  ++   L  D  +S  
Sbjct: 505 LLKEGIKPNSSTFTSILNVC----------KSSDSLELGKWVHFLIMKAGLESDLHVSNA 554

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL-------- 130
           +    V  GDL  A+ +     + ++  WN+II   + +G  Q  F  +  +        
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614

Query: 131 -VTRTVLLN--------------------------------------KCGKLKEVCQLFD 151
            +T T LLN                                      KCG +++  Q+F 
Sbjct: 615 KITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFH 674

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           KLP ++V SW +MI+ Y   G  +E L L  +M  EGV PD +T V  +SA      +E 
Sbjct: 675 KLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEE 734

Query: 212 GKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
           G  LH F       I   + +Y  +VD++ + G + EA + + + ++ E D  +W  L+ 
Sbjct: 735 G--LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQV-EPDSRVWGALLG 791

Query: 270 G 270
            
Sbjct: 792 A 792


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 309/565 (54%), Gaps = 62/565 (10%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L+  G L     +F+++PN    + N++I  YT+  + R+ +     M  +G+ PD  T 
Sbjct: 22  LHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTF 81

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            SL  +   L +   GK LH    +        + N L++MY  CG +  A+K+  +  +
Sbjct: 82  PSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDK--M 136

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYK--- 312
               VV W T++  Y + +   EA +LF  M +  NL  W +MI+G + +D++++     
Sbjct: 137 VNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHV-EDSDYEEALSL 195

Query: 313 ---------------------SCASIGALYHGIWVHVYIKKNQISID------------- 338
                                +C  +GAL  G W+HVYI+K +I +D             
Sbjct: 196 FNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAK 255

Query: 339 --NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
             +IE A  +F E+ EK+V  WT++I   AM G   KA++LF EM+ +  KPD +TF+ +
Sbjct: 256 CGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGV 315

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L+ACSH GLV+EG  + +     Y I+P ++HYGCMVD+LGRAG + E+ + I +MP+ P
Sbjct: 316 LAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAP 375

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
           D  +   LL ACR H N+ +AE A + L E DP N G +VLL+NIY+     +   ++R 
Sbjct: 376 DYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRE 435

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------ 570
            + +  +KK  G S IE GG VH+F  GD+ +P S EIY  L+++   L+  G       
Sbjct: 436 LMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSE 495

Query: 571 ---------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                    +E  L  H E+LA+AFGL+ST+  T IR+V NLR+C DCHS MK  S+VYN
Sbjct: 496 VLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYN 555

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           REI++RD  RFH F  G CSCRD+W
Sbjct: 556 REIIVRDRNRFHHFTKGSCSCRDFW 580


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 309/541 (57%), Gaps = 49/541 (9%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG +     +FD      V+ WN +++ Y   G + E + +   M   GV+ DEVT+VS+
Sbjct: 168 CGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSV 227

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           ++A  ++ D ++GK +   ++E  +  +  L+  L+DMY KCG+IG+A++L     +   
Sbjct: 228 VTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFD--GMQSR 285

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCA 315
           DVV W+ ++SGY ++++  EA  LF EM    VE N ++   ++S            +CA
Sbjct: 286 DVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLS------------ACA 333

Query: 316 SIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTS 360
            +GAL  G WVH Y+++ ++S+  I               + A + F  +  KN + WT+
Sbjct: 334 VLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTA 393

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I   A  G  ++A++LF  M E G +P  VTFI +L ACSH  LV+EG       +R Y
Sbjct: 394 LIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDY 453

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            IKP+++HYGCMVDLLGRAG ++E+  FI +MPI P+  IW +LL +C  H+NV + E A
Sbjct: 454 GIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEA 513

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K +   +P + G +VLL+NIYA AG+  D + +R +++D G++K  G SLIE  G V +
Sbjct: 514 LKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFE 573

Query: 541 FTSGDIFNPHSEEIYLMLNE----------------IEMTLQQQGLQETSLQHRERLAVA 584
           F + D  +P   EIY  + E                + + ++++  + +   H E+LA+A
Sbjct: 574 FFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIA 633

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGL+      TIR+  NLR+C DCHS  K+ S+VY+REIV+RD   FH F+ G CSC DY
Sbjct: 634 FGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDY 693

Query: 645 W 645
           W
Sbjct: 694 W 694



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 104/259 (40%), Gaps = 51/259 (19%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII-------- 111
           +  H+    L R+P++ T + +     G++G A+++       ++  W+++I        
Sbjct: 243 VAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQ 302

Query: 112 ---------ENQLINGYPQEVFAIY---------------------------LYLVTRTV 135
                    E QL    P +V  +                            L  +  T 
Sbjct: 303 CREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTA 362

Query: 136 LLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
           L++   KCG + +  + F+ +P ++  +W  +I    + G  RE L L S M   G+ P 
Sbjct: 363 LVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPT 422

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKL 250
           +VT + ++ A +    +E G+  H         I   + +Y  +VD+  + G + EA + 
Sbjct: 423 DVTFIGVLMACSHSCLVEEGRR-HFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQF 481

Query: 251 LGRYEIDEVDVVLWTTLVS 269
           +    I E + V+W  L+S
Sbjct: 482 IRTMPI-EPNAVIWRALLS 499



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 137/346 (39%), Gaps = 53/346 (15%)

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
            K+ H  LE +    S +LL Y V ++    ++G    L             +  L+  +
Sbjct: 49  AKSFHSLLEAAAA--SPTLLPYAVSLF----RLGPRPPL---------STPCYNVLMRAF 93

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
           + +   ++A  LF EM+                  A    KSC+ + AL  G  V  Y  
Sbjct: 94  LHAGHPEDALHLFIEMLH------AASACPADQHTAACALKSCSRMCALDVGRGVQAYAV 147

Query: 332 KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           K  +  D               ++  A  +F    E  V +W +++AAY   G   + ++
Sbjct: 148 KRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVE 207

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMV 433
           +F  M E G   D+VT +++++AC   G    G      + ++    N  PK+     ++
Sbjct: 208 MFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARN--PKL--VTALM 263

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLL----RACRCHQNVKLAEHAFKHLTETDP 489
           D+  + G + ++      M    DV  WS+++    +A +C + + L       L   +P
Sbjct: 264 DMYAKCGEIGKARRLFDGMQ-SRDVVAWSAMISGYTQADQCREALGLFSE--MQLARVEP 320

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLR--DMGLKKQLGYSLIE 533
            ND   V + +  A  G L+    +   +R   + L   LG +L++
Sbjct: 321 -NDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVD 365


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/667 (32%), Positives = 368/667 (55%), Gaps = 67/667 (10%)

Query: 45  IMVERSCSSIDEFE--RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP 102
           I+++   + + EFE  ++H+H +++    D  +   +       G +G A+++  +    
Sbjct: 110 ILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVL 169

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRT--------VLLNKCGKLKEVCQLFDKLP 154
           ++  WN+++   +  G  +E   ++  +  R          L  + G +++  ++F+ + 
Sbjct: 170 DLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVR 229

Query: 155 NR--DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
            R  D++SW+ M+SCY    M  E L L  +M   GV+ DEV +VS +SA +++ ++EMG
Sbjct: 230 GRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMG 289

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           + +H    +  ++   SL N L+ +Y  CG+I +A+++      + +D++ W +++SGY+
Sbjct: 290 RWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGG-ELLDLISWNSMISGYL 348

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQD------AEFK---------------- 310
           +     +A  LF  M E++++SW+ MISG    +      A F+                
Sbjct: 349 RCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVS 408

Query: 311 -YKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKN 354
              +C  +  L  G W+H YI +N++ ++ I               E A ++F  + EK 
Sbjct: 409 AISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKG 468

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           V  W +VI   AM G  ++++++F +M++TGT P+++TF+ +L AC H GLV++G  + +
Sbjct: 469 VSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFN 528

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
                + I+  ++HYGCMVDLLGRAG L+E+   I SMP+ PDV+ W +LL ACR H++ 
Sbjct: 529 SMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDN 588

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           ++ E   + L +  P +DG HVLL+NIYA  G   ++  IR  +   G+ K  G S+IE 
Sbjct: 589 EMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEA 648

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHR 578
            G VH+F +GD  +P   +I  ML+ +   L+ +G                +ET+L +H 
Sbjct: 649 NGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHS 708

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LAVAFGLI+ S  T IR+  NLRIC DCH+ +K+ S+ ++R+IV+RD  RFH F+ G 
Sbjct: 709 EKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGA 768

Query: 639 CSCRDYW 645
           CSC D+W
Sbjct: 769 CSCMDFW 775


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/538 (38%), Positives = 306/538 (56%), Gaps = 41/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +   +FDKLP ++V++W  +I+ Y   G     L LL KM    V+P+++T  S
Sbjct: 244 KCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTS 303

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++   T    LE GK +H ++ +S       ++N L+ MY KCG + EA+KL G  ++  
Sbjct: 304 ILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFG--DLPH 361

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            DVV WT +V+GY +    DEA  LF  M ++ +    +  +  L         SC+S  
Sbjct: 362 RDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALT--------SCSSPA 413

Query: 319 ALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
            L  G  +H           VY++   +S+     +++ A  +F+++SE+NV  WT++I 
Sbjct: 414 FLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMIT 473

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
             A  G  ++A++ F +M++ G KPD+VTF ++LSAC+H GLV+EG          Y IK
Sbjct: 474 GCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIK 533

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P ++HY C VDLLGRAGHLEE+ N I +MP  P  S+W +LL ACR H +V+  E A ++
Sbjct: 534 PMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAEN 593

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + + DP +DGA+V L+NIYA AGR +D  ++R  +    + K+ G S IE  G VH F  
Sbjct: 594 VLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHV 653

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL------------QETSLQ----HRERLAVAFGL 587
            D  +P ++EIY  L ++   +++QG             +E  +Q    H ERLA+ +GL
Sbjct: 654 EDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGL 713

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + T   T IRIV NLR+CGDCH+  K  S+V  REI+ RD  RFH F  G CSC D+W
Sbjct: 714 MKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 199/412 (48%), Gaps = 60/412 (14%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           I++ G +P     N  +EN L++ Y                   KCG L +  ++FD + 
Sbjct: 122 ILKSGIQP-----NRYLENTLLSMYA------------------KCGSLTDARRVFDGIR 158

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
           +R+++SW  MI  + +     E       M   G  PD+VT VSL++A T    L++G+ 
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +H+ + ++ +++   +   LV MY KCG I +AQ +  +  + E +VV WT L++GY + 
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDK--LPEKNVVTWTLLIAGYAQQ 276

Query: 275 NERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
            + D A  L ++M    V  N I++T ++ G            C +  AL HG  VH YI
Sbjct: 277 GQVDVALELLEKMQQAEVAPNKITYTSILQG------------CTTPLALEHGKKVHRYI 324

Query: 331 KKN----QISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            ++    +I + N           ++ A  LF ++  ++V  WT+++  YA  G   +AI
Sbjct: 325 IQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAI 384

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV-YNIKPKMQHYGCMVD 434
           DLF  M++ G KPD++TF + L++CS    + EG     +     Y++   +Q    +V 
Sbjct: 385 DLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVS 442

Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +  + G +++ A  + +     +V  W++++  C  H   + A   F+ + +
Sbjct: 443 MYAKCGSMDD-ARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKK 493



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 158/347 (45%), Gaps = 55/347 (15%)

Query: 151 DKLPNR------DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISART 204
           D+LP        D ++ +  +S     G  +E LG+L+ M  +G          L+    
Sbjct: 48  DQLPGNAGFRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECA 107

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           +LR LE G+ +H  + +S ++ +  L N L+ MY KCG + +A+++     I + ++V W
Sbjct: 108 RLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFD--GIRDRNIVSW 165

Query: 265 TTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           T ++  +V  N+  EA + ++ M     + + +++  +++   N +             L
Sbjct: 166 TAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPE------------LL 213

Query: 321 YHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAY 365
             G  VH+ I K  + ++               +I  A  +F ++ EKNV  WT +IA Y
Sbjct: 214 QVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGY 273

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
           A  G    A++L  +M++    P+++T+ ++L  C+    ++ G     KK   Y I+  
Sbjct: 274 AQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHG-----KKVHRYIIQSG 328

Query: 426 MQHYG-------CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
              YG        ++ +  + G L+E+      +P   DV  W++++
Sbjct: 329 ---YGREIWVVNALITMYCKCGGLKEARKLFGDLP-HRDVVTWTAMV 371


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/630 (32%), Positives = 339/630 (53%), Gaps = 84/630 (13%)

Query: 73  PQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVT 132
           P I++ +       G  G A++   +    ++  W ++I                     
Sbjct: 140 PLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISG------------------- 180

Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
               L K G L +  +L  + P R+V++W  +IS Y+  G   E +   + M ++G++PD
Sbjct: 181 ----LAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPD 236

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL-- 250
           EVT++ ++SA  +L+DL  G +LH+ + +  M +S  L+  L+DMY KCG  G A+++  
Sbjct: 237 EVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFD 296

Query: 251 -LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----Q 305
            LGR    +     W  ++ GY K    D AR LFD+M + ++I++  +I+G ++    +
Sbjct: 297 ALGRGRGPQP----WNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLR 352

Query: 306 DAEFKYK-------------------SCASIGALYHGIWVHVYIKKNQISID-------- 338
           +A   +                    + AS+GAL  G  +H  I++  +  D        
Sbjct: 353 EALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALL 412

Query: 339 -------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                   +E A   F ++S ++V+ W+++I   A  G  + A++ F  M+  G   + V
Sbjct: 413 DMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSV 472

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           T+IA+L+ACSH  L+DEG  +  +   ++NI+P+++HYGCM+DLLGR+G L+E+ + + +
Sbjct: 473 TYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQT 532

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           MP+ P+  IW+S+L ACR H+NV LA++A  HL + +P  D  +V + NIY  + + +D 
Sbjct: 533 MPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDA 592

Query: 512 SRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL- 570
           S+IR  +   G+KK  GYS I   G VHKF  GD  +P   EI +M+ EI   L+  G  
Sbjct: 593 SKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYS 652

Query: 571 ---------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
                          ++  L H E+LA+AFGL+S +    + I+ NLR+C DCHS +K+ 
Sbjct: 653 PITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLI 712

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S+++NREI++RD  RFH F+GG CSC D+W
Sbjct: 713 SRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 132/318 (41%), Gaps = 49/318 (15%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS- 201
           L+    LFD++P    +    + +C+ +       + L  +M    V PD  T   L   
Sbjct: 53  LRYALSLFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKC 112

Query: 202 -ARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            AR     L +G+ LH     + +  +  L+ + ++ MY + G  G+A++      +   
Sbjct: 113 CARGGAHVL-LGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVK-- 169

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------ML 303
           DVV WTT++SG  K    D+ARRL      RN+++WT +ISG                ML
Sbjct: 170 DVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSML 229

Query: 304 NQDAEFK-------YKSCASIGALYHGIWVHVYI-KKNQISIDNIELAY-DLFSEISE-- 352
           +               +C  +  L  G  +H+ +  K  +  D + +A  D++++  +  
Sbjct: 230 SDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTG 289

Query: 353 ------------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
                       +    W ++I  Y   GH   A  LF +ME+     D +TF +L++  
Sbjct: 290 RAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDH----DVITFNSLITGY 345

Query: 401 SHGGLVDEGYDFLSKKSR 418
            HGG + E     +K  R
Sbjct: 346 IHGGRLREALLLFTKMRR 363


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/667 (33%), Positives = 337/667 (50%), Gaps = 125/667 (18%)

Query: 49  RSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           RSC   SS+D  ER+H+ +ITT +   P+                               
Sbjct: 21  RSCARESSLDIGERLHATIITTGIAGAPE------------------------------- 49

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN--RDVISWNT 163
              + + N L+  Y                    CG   +  ++FD++P+  +D + W T
Sbjct: 50  ---TFLHNALLQFYAS------------------CGCAWQARKVFDEIPHSHKDTVDWTT 88

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           ++ C+    +  E L +  +M   GV PDEVT+V L     +L D+ +G   H  + +  
Sbjct: 89  LMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMG 148

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           +       N ++DMY K G +GEA+++   YE+    VV WT ++ G ++S      R +
Sbjct: 149 LGGVEKACNAVMDMYAKSGLMGEARRVF--YEMKGQSVVSWTVILDGVIRSEGVRNGRVV 206

Query: 284 FDEMVERNLISWTLMISGMLNQ-----------------DAEFKY-------KSCASIGA 319
           FDEM ERN ++WT+MI+G L+                  + E  Y        +C+  G 
Sbjct: 207 FDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGD 266

Query: 320 LYHGIWVHVY---IKKNQISI-------------DNIELAYDLFSEISEKNVYLWTSVIA 363
           L  G WVH Y    K+ +++I               I +A+  F ++ ++NV  W ++++
Sbjct: 267 LMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLS 326

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
             AM G  + A+D+F +M +   KPD VTF ++LSACSH GLVD+G  +      VY I 
Sbjct: 327 GLAMHGLGRAALDIFPQMFKE-AKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGIT 385

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           PK++HY CMVDLLGRAG LEE+   +  MPI P+  +  SLL +C  H  ++L EH  + 
Sbjct: 386 PKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQE 445

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L + DP N   H+LL+N+YA AG+ +  + +R  L+  G+KK  G S I  GG VH+F++
Sbjct: 446 LVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSA 505

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSLQ------------------------HR 578
           GD  +P + E+Y ML+E+   L+  G    T+LQ                        H 
Sbjct: 506 GDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHS 565

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LA+ FGLIST     + I  NLRIC DCHS +K+ S++YNREIVIRD  RFH F+ G 
Sbjct: 566 EKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGS 625

Query: 639 CSCRDYW 645
           CSC DYW
Sbjct: 626 CSCCDYW 632



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 147/359 (40%), Gaps = 56/359 (15%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGS----LLNYLVDMYFKCGKIGEAQKLLGRY 254
           L+ +  +   L++G+ LH  +   T  I+G+    L N L+  Y  CG   +A+K+    
Sbjct: 19  LLRSCARESSLDIGERLHATI--ITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEI 76

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISG--------- 301
                D V WTTL+  +V+ N  DEA  +F EM    V+ + ++   +  G         
Sbjct: 77  PHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVV 136

Query: 302 -------MLNQDAEFKYKSCASIGALYH-----GIWVHVYIKKNQISIDNIELAYD---- 345
                  M+        K+C ++  +Y      G    V+ +    S+ +  +  D    
Sbjct: 137 GAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIR 196

Query: 346 ---------LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIA 395
                    +F E+ E+N   WT +IA Y  +G  Q++  L  EM  +   + + VT  +
Sbjct: 197 SEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCS 256

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG-----CMVDLLGRAGHLEESANFIT 450
           +L+ACS  G +      + +    Y +K K +         MVD+  + G +  +  F  
Sbjct: 257 ILTACSQSGDL-----MMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFK 311

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
            MP   +V  W+++L     H   + A   F  + +    +D     + +  + +G +D
Sbjct: 312 KMP-QRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAKPDDVTFTSVLSACSHSGLVD 369


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/675 (31%), Positives = 351/675 (52%), Gaps = 89/675 (13%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           S  S++  E++H +++ +       +   +  F +    +  A+++  +  E ++  WNS
Sbjct: 207 SLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNS 266

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTV---------------------------------- 135
           II   + NG  ++  ++++ ++   +                                  
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKAC 326

Query: 136 -------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
                        + +KCG L     +F ++  R V+S+ +MI+ Y   G+  E + L  
Sbjct: 327 FSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFE 386

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           +M  EG+SPD  T+ ++++   + R L+ GK +H +++E+ M     + N L+DMY KCG
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCG 446

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISG 301
            + EA+ +     +   D++ W T++ GY K+   +EA  LF+ + VE+        ++ 
Sbjct: 447 SMREAELVFSEMRVK--DIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVAC 504

Query: 302 MLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDL 346
           +L         +CAS+ A   G  +H YI +N    D                + LA  L
Sbjct: 505 VL--------PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLL 556

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F +I+ K++  WT +IA Y M G  ++AI LF +M + G +PD+++F++LL ACSH GLV
Sbjct: 557 FDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLV 616

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           DEG+ F +       I+P ++HY C+VD+L R G+L ++  FI +MPIPPD +IW +LL 
Sbjct: 617 DEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLC 676

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
            CR H +VKLAE   + + E +P N G +VL+ANIYA+A + +++ R+R ++   GL+K 
Sbjct: 677 GCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKN 736

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------- 570
            G S IE  G V+ F +GD  NP +E+I   L  +   + ++G                 
Sbjct: 737 PGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEK 796

Query: 571 QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           +E    H E+LA+A G+IS+     IR+  NLR+CGDCH   K  S++  REIV+RD+ R
Sbjct: 797 EEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNR 856

Query: 631 FHRFQGGQCSCRDYW 645
           FH+F+ G CSCR +W
Sbjct: 857 FHQFKDGHCSCRGFW 871



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 171/347 (49%), Gaps = 27/347 (7%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
            ++   CG LKE  ++FD++     + WN +++     G +   +GL  KM + GV  D 
Sbjct: 136 ALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDS 195

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T   +  + + LR +  G+ LH ++ +S      S+ N LV  Y K  ++  A+K+   
Sbjct: 196 YTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFD- 254

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA-- 307
            E+ E DV+ W ++++GYV +   ++   +F +M    +E +L +   + +G  +     
Sbjct: 255 -EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLIS 313

Query: 308 ------EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSV 361
                  F  K+C S    +    + +Y K       +++ A  +F E+S ++V  +TS+
Sbjct: 314 LGRAVHCFGVKACFSREDRFCNTLLDMYSK-----CGDLDSAKVVFREMSGRSVVSYTSM 368

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSR 418
           IA YA  G A +A+ LF EMEE G  PD  T  A+L+ C+   L+DEG   ++++ +   
Sbjct: 369 IAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDM 428

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++I         ++D+  + G + E+    + M +  D+  W++++
Sbjct: 429 GFDIFVS----NALMDMYAKCGSMREAELVFSEMRV-KDIISWNTVI 470



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 185/449 (41%), Gaps = 76/449 (16%)

Query: 131 VTRTVLLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           V + V+ N+   L+ V    D +   +R V   NT +  +   G  +  + LL   G   
Sbjct: 33  VRKDVIFNR-ASLRTVSDRADSITTFDRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWD 91

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           + P   T+ S++      + L+ GK +  F+  +   +  +L + L  MY  CG + EA 
Sbjct: 92  IDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEAS 149

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
           ++  + +I++   + W  L++   KS +   +  LF +M          M SG+      
Sbjct: 150 RVFDQVKIEK--ALFWNILMNELAKSGDFSGSIGLFKKM----------MSSGVEMDSYT 197

Query: 309 FK--YKSCASIGALYHGIWVHVYIKKNQI----SIDN-----------IELAYDLFSEIS 351
           F    KS +S+ ++  G  +H YI K+      S+ N           ++ A  +F E++
Sbjct: 198 FSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMT 257

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           E++V  W S+I  Y   G A+K + +F++M  +G + D  T +++ + C+   L+  G  
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 412 F--------LSKKSRVYNIKPKMQ----------------------HYGCMVDLLGRAGH 441
                     S++ R  N    M                        Y  M+    R G 
Sbjct: 318 VHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGL 377

Query: 442 LEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
             E+      M    I PDV   +++L  C  ++ +   +   + + E D    G  + +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDM---GFDIFV 434

Query: 499 AN----IYAKAGRLDDMSRI--RMKLRDM 521
           +N    +YAK G + +   +   M+++D+
Sbjct: 435 SNALMDMYAKCGSMREAELVFSEMRVKDI 463


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/717 (32%), Positives = 353/717 (49%), Gaps = 114/717 (15%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGD---LGYAQQI 95
           P SL ++    SC S  +  +IH+  I   L       +++  F    G    L +++ +
Sbjct: 10  PSSLCLL---ESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLL 66

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV----------LLNKC----- 140
             Q D P + +WN++I     +  P+E   +Y+ ++ + +          LLN C     
Sbjct: 67  FSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSS 126

Query: 141 ---------------------------------GKLKEVCQLFDKLPNRDVISWNTMISC 167
                                            G L     LFD+   RD++S+NTMI  
Sbjct: 127 LEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKG 186

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
           Y  +      L L  +M   G+ PDE T V+L S  + L +  +GK +H  + ++   I 
Sbjct: 187 YAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSID 246

Query: 228 GSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            ++L  + +VDMY KCG I  A+++       +     W+++V GY +  E + AR+LF+
Sbjct: 247 SNILLKSAIVDMYAKCGLINIAERVFSTMGTSK-SAAAWSSMVCGYARCGEINVARKLFN 305

Query: 286 EMVERNLISWTLMISG--MLNQDAE----FK-----------------YKSCASIGA--- 319
            M ER++ISWT MISG     Q +E    FK                   +CA +GA   
Sbjct: 306 HMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDL 365

Query: 320 ---LYHGIWVHVYIKKNQI----------SIDNIELAYDLFSEISE--KNVYLWTSVIAA 364
              LYH    +    +N I             +I+ A ++F  + +  K  +++ S+IA 
Sbjct: 366 GKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAG 425

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            A  G  + AI +F E+  TG KPD+VTF+ +L AC H GL++EG          Y IKP
Sbjct: 426 LAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKP 485

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +M+HYGCMVDLLGR G LEE+ + +  MP   +  IW +LL ACR H NVK+ E A + L
Sbjct: 486 QMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKL 545

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +  +   +VLL+NI A A + ++  ++R  + D G++K  G+S IE GG +H+F + 
Sbjct: 546 LEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVAS 605

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLI 588
           D  +P  +EI LML ++ M L+  G    + Q                H E+LA+AFGL+
Sbjct: 606 DKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLM 665

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             S   TIRIV NLRIC DCH   K+ S++Y REI +RD  RFH F+ G CSC D+W
Sbjct: 666 YCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/555 (37%), Positives = 313/555 (56%), Gaps = 53/555 (9%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L   T LLN    CG LK    LF+++ +R+ + W +MIS Y       E L L  KM  
Sbjct: 114 LYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEE 173

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           +G SPDEVTM +L+SA  +L+DL +G  LH  + E  MKI   L + LV+MY KCG +  
Sbjct: 174 DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKT 233

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-----VERNLISWTLMISG 301
           A+++    ++ + DV  W+ L+ GYVK+N   EA +LF E+     +  N ++   +IS 
Sbjct: 234 ARQVFD--QLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVIS- 290

Query: 302 MLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ----ISIDN-----------IELAYDL 346
                      +CA +G L  G WVH YI + Q    +S++N           I+ A  +
Sbjct: 291 -----------ACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRI 339

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  +S K++  W S++   A+ G  ++A+  F  M+ T  +PD++TFI +L+ACSH GLV
Sbjct: 340 FDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLV 399

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
            EG     +   +Y ++ K +HYGCMVDLL RAG L E+  FI  MP+ PD +IW S+L 
Sbjct: 400 QEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLG 459

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           ACR + N++L E A + L E +P NDG ++LL+NIYA+    +++ ++R  + + G++K 
Sbjct: 460 ACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKT 519

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------- 570
            G S +      H F +GD  +P   EI +ML ++   L+  G                 
Sbjct: 520 PGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKK 579

Query: 571 QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           +E+  QH E+LA+ +GL+ +     I I+ NLR+C DCH+ +K+ S++Y R+I +RD  R
Sbjct: 580 EESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNR 639

Query: 631 FHRFQGGQCSCRDYW 645
           FH F+ G CSCRDYW
Sbjct: 640 FHHFKDGSCSCRDYW 654



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 179/358 (50%), Gaps = 44/358 (12%)

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKLRDLEMGKNL 215
           DV++WN+M+  + +  M R  L   ++M     + PD  T  SL+     L + ++GK L
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 216 H----LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           H     ++  S + I  +LLN    MY  CG +  A+ L  R  +   + V+WT+++SGY
Sbjct: 102 HGQVVKYMLHSDLYIETTLLN----MYAACGDLKSARFLFER--MGHRNKVVWTSMISGY 155

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
           +K++  +EA  L+ +M E       + ++ +++        +CA +  L  G+ +H +I+
Sbjct: 156 MKNHCPNEALLLYKKMEEDGFSPDEVTMATLVS--------ACAELKDLGVGMKLHSHIR 207

Query: 332 KNQISI---------------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           +  + I                +++ A  +F ++S+K+VY W+++I  Y     + +A+ 
Sbjct: 208 EMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQ 267

Query: 377 LFLEME-ETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCM 432
           LF E+   +  +P++VT +A++SAC+  G ++ G   +D++++  + +++         +
Sbjct: 268 LFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN----NSL 323

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           +D+  + G ++ +     SM     +S W+S++     H   + A   F HL +T  L
Sbjct: 324 IDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGLALHGLGREALAQF-HLMQTTDL 379



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 161/389 (41%), Gaps = 50/389 (12%)

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
           LN L+      G +G             +DV+ W +++  +V SN    A + + EM+ER
Sbjct: 13  LNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLER 72

Query: 291 NLISWTLMISGMLNQDAEFKY----KSCA-----SIGALYHGIWVH------VYIKKNQI 335
           +            N    F +    K CA      +G + HG  V       +YI+   +
Sbjct: 73  S-----------RNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLL 121

Query: 336 SI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
           ++     +++ A  LF  +  +N  +WTS+I+ Y       +A+ L+ +MEE G  PD+V
Sbjct: 122 NMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEV 181

Query: 392 TFIALLSACSHGGLVDEGYDF-LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           T   L+SAC+   L D G    L    R  ++K        +V++  + G L+ +     
Sbjct: 182 TMATLVSACAE--LKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            +    DV  WS+L+     +     A   F+ +     +      +LA I A A +L D
Sbjct: 240 QLS-DKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACA-QLGD 297

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS-GD------IFNPHSEEIYLMLNEIEM 563
           +   R  + D   + Q G+S+      +  F+  GD      IF+  S +  +  N +  
Sbjct: 298 LETGRW-VHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVN 356

Query: 564 TLQQQGLQETSLQHRERLAVAFGLISTSE 592
            L   GL       RE LA  F L+ T++
Sbjct: 357 GLALHGLG------REALA-QFHLMQTTD 378


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/548 (36%), Positives = 308/548 (56%), Gaps = 47/548 (8%)

Query: 133 RTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           RT LL+   KCG LK+  ++F+K+  ++V++WN MI+ Y     Y   L     +  EG+
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            P+  T  S+++       LE+GK +H  + ++ ++    + N LV M+  CG +  A+ 
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           L    ++ + D+V W T+++G+V+  +   A   F  M E  +    +  +G+LN     
Sbjct: 571 LFN--DMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLN----- 623

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKN 354
              +CAS  AL  G  +H  I +     D               +IE A+ +F ++ +KN
Sbjct: 624 ---ACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN 680

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-YDFL 413
           VY WTS+I  YA  G  ++A++LF +M++ G KPD +TF+  LSAC+H GL++EG + F 
Sbjct: 681 VYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQ 740

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           S K   +NI+P+M+HYGCMVDL GRAG L E+  FI  M + PD  +W +LL AC+ H N
Sbjct: 741 SMKE--FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLN 798

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
           V+LAE A +   E DP ++G  V+L+NIYA AG   +++++R  + D G+ K+ G S IE
Sbjct: 799 VELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIE 858

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQH 577
             G VH F S D  +P +EEI+  L  + M ++Q G                 ++    H
Sbjct: 859 VDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYH 918

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            ERLA+ +GL+ T   T I I  NLR+CGDCH+  K  S++  R+I+ RD+ RFH F+ G
Sbjct: 919 SERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDG 978

Query: 638 QCSCRDYW 645
            CSC D+W
Sbjct: 979 VCSCGDFW 986



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/494 (22%), Positives = 210/494 (42%), Gaps = 78/494 (15%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           ERI++H+  + +  D  +   +       G+   A+QI     E ++  WN ++   + +
Sbjct: 130 ERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189

Query: 118 GYPQEVFAIY---------------------------------LY-----------LVTR 133
           G  +E F ++                                 LY           L   
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
           T L+N   KCG + +  ++FD LP RD+++W +MI+     G +++   L  +M  EGV 
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD+V  VSL+ A      LE GK +H  ++E        +   ++ MY KCG + +A ++
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                +   +VV WT +++G+ +    DEA   F++M+E  +    +    +L       
Sbjct: 370 FDL--VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILG------ 421

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNV 355
             +C+S  AL  G  +  +I +     D+               ++ A+ +F +IS++NV
Sbjct: 422 --ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--YDFL 413
             W ++I AY        A+  F  + + G KP+  TF ++L+ C     ++ G    FL
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFL 539

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
             K+    ++  +     +V +    G L  + N    MP   D+  W++++     H  
Sbjct: 540 IMKA---GLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGK 595

Query: 474 VKLAEHAFKHLTET 487
            ++A   FK + E+
Sbjct: 596 NQVAFDYFKMMQES 609



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 189/426 (44%), Gaps = 47/426 (11%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T    +C K +  C +F  +  +D    N +++  +  G + E + +L ++ +  +    
Sbjct: 55  TSFSGRCPKGR--CVVFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYR 110

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T  +L+    K ++L  G+ ++  +++S ++    + N L++MY KCG    A+++   
Sbjct: 111 QTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFD- 169

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--QDAEFKY 311
            ++ E DV  W  L+ GYV+    +EA +L ++MV+ ++         MLN   DA    
Sbjct: 170 -DMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVD 228

Query: 312 KSCASIGALYHGIW-----VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
           K       +    W     V   +    I   +I  A  +F  +  +++  WTS+I   A
Sbjct: 229 KGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE-----------GYD---- 411
             G  ++A +LF  MEE G +PD+V F++LL AC+H   +++           G+D    
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIY 348

Query: 412 ----FLSKKSRVYNIKPKMQ-----------HYGCMVDLLGRAGHLEESANFITSM---P 453
                LS  ++  +++  ++            +  M+    + G ++E+  F   M    
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMS 512
           I P+   + S+L AC     +K  +    H+ E     +D     L ++YAK G L D  
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 513 RIRMKL 518
           R+  K+
Sbjct: 469 RVFEKI 474



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 123/301 (40%), Gaps = 62/301 (20%)

Query: 19  LVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQ 78
           L++ G+ P         NVC          +S  S++  + +H  ++   L  D  +S  
Sbjct: 505 LLKEGIKPNSSTFTSILNVC----------KSSDSLELGKWVHFLIMKAGLESDLHVSNA 554

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL-------- 130
           +    V  GDL  A+ +     + ++  WN+II   + +G  Q  F  +  +        
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614

Query: 131 -VTRTVLLN--------------------------------------KCGKLKEVCQLFD 151
            +T T LLN                                      KCG +++  Q+F 
Sbjct: 615 KITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFH 674

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           KLP ++V SW +MI+ Y   G  +E L L  +M  EGV PD +T V  +SA      +E 
Sbjct: 675 KLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEE 734

Query: 212 GKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
           G  LH F       I   + +Y  +VD++ + G + EA + + + ++ E D  +W  L+ 
Sbjct: 735 G--LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQV-EPDSRVWGALLG 791

Query: 270 G 270
            
Sbjct: 792 A 792


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/677 (34%), Positives = 347/677 (51%), Gaps = 110/677 (16%)

Query: 25  VPKMRISRKFANVCPVSLDVIMVE--RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF 82
           +P+     +  NV P S + + ++  R+ +S  E  ++H+ +I TN        T+V   
Sbjct: 10  IPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLV 69

Query: 83  LVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGK 142
             FT    YAQQI +             +E Q       E F                  
Sbjct: 70  CAFTPSFHYAQQIFK------------CVEKQ-----KPETFV----------------- 95

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
                             WN+ +          + + L  ++    V PD  T  S++ A
Sbjct: 96  ------------------WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRA 137

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
              L DL  G+ LH  +E+   + +  L N +V +Y  CG++GEA+ L  +  + + DVV
Sbjct: 138 CLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEK--MPQRDVV 195

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--------------QDAE 308
            W  +++  +K  + + A  LF  M ERN+ SWT MI+G +               ++A 
Sbjct: 196 TWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG 255

Query: 309 FK---------YKSCASIGALYHGIWVHVYIK----KNQISIDN-----------IELAY 344
            K           +CA +GAL  G+ +H Y      K  + I N           +E A 
Sbjct: 256 VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEAC 315

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F E+ E+ V  W+++I   AM G A++A+ LF +M + G +P+ VTFI LL ACSH G
Sbjct: 316 KVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMG 375

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           L+ EG  F +  +R Y I P+++HYGCMVDLL RAG L E+  FI +MP+ P+  +W +L
Sbjct: 376 LISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGAL 435

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           L ACR H+NV++AE A KHL E DPLNDG +V+L+NIYA+AGR +D +R+R  ++D  +K
Sbjct: 436 LGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVK 495

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL-------- 575
           K  G+S I   G VH+F +G+  +P +E+I+    E+   ++ +G +  TS+        
Sbjct: 496 KTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEG 555

Query: 576 -------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDN 628
                  +H E+LA+ FGL++T  +T IRI+ NLRIC DCHS  K+ S + NREIV+RD 
Sbjct: 556 EKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDR 615

Query: 629 GRFHRFQGGQCSCRDYW 645
            RFH F    CSCRDYW
Sbjct: 616 NRFHCFNDNSCSCRDYW 632


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/646 (32%), Positives = 344/646 (53%), Gaps = 83/646 (12%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           +++HS ++   L  +  +S  +       GD   A+ +  +    +I  WN++I      
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMI------ 219

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
                             L  + G++      F+++  RD+++WN+MIS Y   G     
Sbjct: 220 -----------------ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRA 262

Query: 178 LGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
           L + SKM  +  +SPD  T+ S++SA   L  L +G+ +H  +  +   ISG +LN L+ 
Sbjct: 263 LDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALIS 322

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY +CG +  A++L+ +    ++ +  +T L+ GY+K  + +EA+ +FD + +R++++WT
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWT 382

Query: 297 LMISGM----LNQDAEFKYKS-------------------CASIGALYHGIWVH-VYIKK 332
            MI G     L  +A   ++S                    +S+ +L HG  +H   +K 
Sbjct: 383 AMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKS 442

Query: 333 NQI-----------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            +I                 SI +   A+DL     E++   WTS+I A A  GHA++A+
Sbjct: 443 GEIYSVSVSNALITMYAKAGSITSASRAFDLIR--CERDTVSWTSMIIALAQHGHAEEAL 500

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           +LF  M   G +PD +T++ + SAC+H GLV++G  +      V  I P + HY CMVDL
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL 560

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
            GRAG L+E+  FI  MPI PDV  W SLL ACR ++N+ L + A + L   +P N GA+
Sbjct: 561 FGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAY 620

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
             LAN+Y+  G+ ++ ++IR  ++D  +KK+ G+S IE    VH F   D  +P   EIY
Sbjct: 621 SALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIY 680

Query: 556 LMLNEIEMTLQQQG---------------LQETSLQHR-ERLAVAFGLISTSEKTTIRIV 599
           + + +I   +++ G               ++E  L+H  E+LA+AFGLIST +KTT+RI+
Sbjct: 681 ITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIM 740

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C DCH+ +K  S++  REI++RD  RFH F+ G CSCRDYW
Sbjct: 741 KNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/543 (21%), Positives = 218/543 (40%), Gaps = 121/543 (22%)

Query: 85  FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL-------- 136
           FT  L + + +I+ G    + + N+++      GY      ++  +  RT          
Sbjct: 31  FTAQLVHCR-VIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSA 89

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
             K G +   C+ FD+LP RD +SW TMI  Y ++G Y + + ++ +M  EG+ P + T+
Sbjct: 90  YAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTL 149

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            +++++    R LE GK +H F+ +  ++ + S+ N L++MY KCG    A+ +  R  +
Sbjct: 150 TNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVV 209

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG--------------- 301
              D+  W  +++ +++  + D A   F++M ER++++W  MISG               
Sbjct: 210 K--DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFS 267

Query: 302 ------MLNQDAEFKYKS----CASIGALYHGIWVHVYIKKNQISIDNIEL--------- 342
                 ML+ D  F   S    CA++  L  G  +H +I      I  I L         
Sbjct: 268 KMLRDSMLSPD-RFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSR 326

Query: 343 ---------------------------------------AYDLFSEISEKNVYLWTSVIA 363
                                                  A ++F  + +++V  WT++I 
Sbjct: 327 CGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIV 386

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDF 412
            Y   G   +AI+LF  M     +P+  T  A+LS  S           HG  V  G  +
Sbjct: 387 GYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIY 446

Query: 413 -----------------LSKKSRVYNI---KPKMQHYGCMVDLLGRAGHLEESANFITSM 452
                            ++  SR +++   +     +  M+  L + GH EE+     +M
Sbjct: 447 SVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506

Query: 453 ---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYAKAGR 507
               + PD   +  +  AC     V      F  + + D +      +  + +++ +AG 
Sbjct: 507 LMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGL 566

Query: 508 LDD 510
           L +
Sbjct: 567 LQE 569


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 316/541 (58%), Gaps = 42/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +K G L    Q+F+ +  R V+SW +MI+ Y   G+    + L  +M  EG+SPD  T
Sbjct: 295 MYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFT 354

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + +++ A      LE GK++H +++E+ M+    + N L+DMY KCG +G+A  +    +
Sbjct: 355 ITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQ 414

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D+V W T++ GY K++  +EA  LF EM + N    ++ ++ +L         +CA
Sbjct: 415 VK--DIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACIL--------PACA 463

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
           S+ AL  G  +H +I +N  S+D                + LA  LF  I EK++  WT 
Sbjct: 464 SLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTV 523

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +IA Y M G+  +AI  F EM  +G +PD+V+FI++L ACSH GL+DEG+ F +      
Sbjct: 524 MIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNC 583

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I+PK +HY C+VDLL RAG+L ++  FI  MPI PD +IW +LL  CR + +VKLAE  
Sbjct: 584 CIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKV 643

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            +H+ E +P N G +VLLANIYA+A + +++ ++R ++   GL+K  G S IE  G VH 
Sbjct: 644 AEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHI 703

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVA 584
           F +GD  +P + +I L+L +    ++++G                +E +L  H E++A+A
Sbjct: 704 FVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMA 763

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FG++S     T+R+  NLR+CGDCH   K  S++  R+I++RD+ RFH F+ G CSCR +
Sbjct: 764 FGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGH 823

Query: 645 W 645
           W
Sbjct: 824 W 824



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 193/373 (51%), Gaps = 33/373 (8%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           SI +  RIHS + + ++  D  + +++    V  GDL   ++I  +    ++ +WN    
Sbjct: 116 SIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWN---- 171

Query: 113 NQLINGYPQ-EVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
             L+NGY +   F   L L  R   L    +++   +LFD+L +RDVISWN+MIS Y S 
Sbjct: 172 -LLMNGYAKIGNFRESLSLFKRMRELG-IRRVESARKLFDELGDRDVISWNSMISGYVSN 229

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G+  +GL L  +M   G++ D  TMVS+++  +    L +G+ LH +  +++     +L 
Sbjct: 230 GLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLN 289

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L+DMY K G +  A ++     + E  VV WT++++GY +    D + RLF EM +  
Sbjct: 290 NCLLDMYSKSGNLNSAIQVF--ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEG 347

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------------- 338
           +      I+ +L+        +CA  G L +G  VH YIK+N++  D             
Sbjct: 348 ISPDIFTITTILH--------ACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAK 399

Query: 339 --NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
             ++  A+ +FSE+  K++  W ++I  Y+      +A++LF+EM+   +KP+ +T   +
Sbjct: 400 CGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYN-SKPNSITMACI 458

Query: 397 LSACSHGGLVDEG 409
           L AC+    ++ G
Sbjct: 459 LPACASLAALERG 471



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 167/370 (45%), Gaps = 74/370 (20%)

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EV-TMVSLISARTKLRDLEMGKNL 215
           +  +N  I  +  +G  R  + L++    +   PD E+ T  S++     L+ ++ G+ +
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELIN----QSPKPDLELRTYCSVLQLCADLKSIQDGRRI 123

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK-S 274
           H  ++ + +++ G L + LV MY  CG + E +++  +  +    V LW  L++GY K  
Sbjct: 124 HSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDK--VANEKVFLWNLLMNGYAKIG 181

Query: 275 NER-----------------DEARRLFDEMVERNLISWTLMISGMLNQDAEFK------- 310
           N R                 + AR+LFDE+ +R++ISW  MISG ++     K       
Sbjct: 182 NFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQ 241

Query: 311 ----------------YKSCASIGALYHGIWVHVYIKK---------NQISID------N 339
                              C++ G L  G  +H Y  K         N   +D      N
Sbjct: 242 MLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGN 301

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           +  A  +F  + E++V  WTS+IA YA  G +  ++ LF EME+ G  PD  T   +L A
Sbjct: 302 LNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHA 361

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIP 455
           C+  GL++ G D  +     Y  + KMQ        ++D+  + G + ++ +  + M + 
Sbjct: 362 CACTGLLENGKDVHN-----YIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQV- 415

Query: 456 PDVSIWSSLL 465
            D+  W++++
Sbjct: 416 KDIVSWNTMI 425



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 36  NVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           N  P S+ +  +  +C+S+   ER   IH H++      D  ++  + +  +  G LG A
Sbjct: 447 NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLA 506

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY 127
           + +     E ++  W  +I    ++GY  E  A +
Sbjct: 507 RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAF 541


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/590 (35%), Positives = 326/590 (55%), Gaps = 59/590 (10%)

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           II   LI  +   +F ++      ++ +NK   L    Q+F ++ N ++  +N+ I  ++
Sbjct: 33  IIHAHLIRAHT--IFDVFAASCLISISINK-NLLDYAAQVFYQIQNPNLFIYNSFIRGFS 89

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
                 +      +    G+ PD +T   L+ A T+   L+MG   H  +          
Sbjct: 90  GSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVY 149

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           + N LV MY   G I  A  +  R  I  +DVV WT++V+GY+KS +   AR+LFD+M E
Sbjct: 150 VQNSLVTMYSTLGDIKSASYVFRR--ISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPE 207

Query: 290 RNLISWTLMISG-----MLNQDAEFKY------------------KSCASIGALYHGIWV 326
           +NL++W++MISG       ++  E  +                   SCA +GAL  G   
Sbjct: 208 KNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERA 267

Query: 327 HVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H YI +N+++++               +I+ A  +F ++  ++   WT++IA +AM G+A
Sbjct: 268 HDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYA 327

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
           +KA++ F  ME+ G  P ++TF A+LSACSHGGLV+ G +      R Y I+P+++HYGC
Sbjct: 328 EKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGC 387

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           MVDLLGRAG L E+  F+  MP+ P+  IW +LL ACR H+N ++AE A K L E  P +
Sbjct: 388 MVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEH 447

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
            G +VLL+NIYA+  + +++  IR  +++ G+ K  GY+L E  G VHKFT GD  +P  
Sbjct: 448 SGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEI 507

Query: 552 EEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTT 595
           ++I  M  EI   ++  G                +E+++ +H E+LA+A+ ++ T     
Sbjct: 508 QQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDP 567

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IRIV NLR+C DCH+  K+ S+VY RE+++RD  RFH F+GG CSC DYW
Sbjct: 568 IRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/674 (31%), Positives = 346/674 (51%), Gaps = 96/674 (14%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
            ++ + IH+ L+  +L +D  +   +    +  G   Y++ +  Q  EP I +WN++I  
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 114 QLINGYPQEVF--AIYLY------------------------------------------ 129
            +     ++ F  AI+LY                                          
Sbjct: 89  LV----SKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144

Query: 130 ----LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
               +  +T LL+   KC    +  ++FD +P+++V+SW  +I+ Y S G +RE +G   
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           K+   G+ PD  ++V +++A  +L D   G+ +  ++ +S M  +  +   L+DMY KCG
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCG 264

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
            +  A  +     + E D+V W+T++ GY  +    +A  LF +M   NL      + G+
Sbjct: 265 NLERANLIFS--AMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLF 347
           L+        +CA++GAL  GIW    + +N+                   ++  A+++F
Sbjct: 323 LS--------ACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIF 374

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
           + + +K+  +W +++   +M GHA+    LF  +E+ G +PD+ TFI LL  C+HGG V+
Sbjct: 375 TAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVN 434

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG  F +   RV+++ P ++HYGCMVDLLGRAG L E+   I +MP+ P+  +W +LL  
Sbjct: 435 EGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG 494

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           C+ H++  LAE   K L E +P N G +V L+NIY+   R ++  +IR  +++  ++K  
Sbjct: 495 CKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIR 554

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL------------ 575
             S IE  G VH+F  GD  +  SE+IY  L+E+   L+  G   T+             
Sbjct: 555 ACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKE 614

Query: 576 ----QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
                H E+LAVAFGLI++     IR+V NLR+CGDCH  +K+ S++  REI+IRD  RF
Sbjct: 615 HFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRF 674

Query: 632 HRFQGGQCSCRDYW 645
           H F  G CSCRDYW
Sbjct: 675 HTFIDGSCSCRDYW 688


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/674 (31%), Positives = 345/674 (51%), Gaps = 96/674 (14%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
            ++ + IH+ L+  +L +D  +   +    +  G   Y++ +  Q  EP I +WN++I  
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 114 QLINGYPQEVF--AIYLY------------------------------------------ 129
            +     ++ F  AI+LY                                          
Sbjct: 89  LV----SKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAG 144

Query: 130 ----LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
               +  +T LL+   KC    +  ++FD +P+++V+SW  +I+ Y S G +RE +G   
Sbjct: 145 YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFK 204

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           K+   G+ PD  ++V +++A  +L D   G+ +  ++ +S M  +  +   L+DMY KCG
Sbjct: 205 KLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCG 264

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
            +  A  +     + E D+V W+T++ GY  +    +A  LF +M   NL      + G+
Sbjct: 265 NLERANLIFS--AMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLF 347
           L+        +CA++GAL  GIW    + +N+                   ++  A+++F
Sbjct: 323 LS--------ACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIF 374

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
           + +  K+  +W +++   +M GHA+    LF  +E+ G +PD+ TFI LL  C+HGG V+
Sbjct: 375 TAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVN 434

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG  F +   RV+++ P ++HYGCMVDLLGRAG L E+   I +MP+ P+  +W +LL  
Sbjct: 435 EGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG 494

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           C+ H++  LAE   K L E +P N G +V L+NIY+   R ++  +IR  +++  ++K  
Sbjct: 495 CKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIR 554

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL------------ 575
             S IE  G VH+F  GD  +  SE+IY  L+E+   L+  G   T+             
Sbjct: 555 ACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKE 614

Query: 576 ----QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
                H E+LAVAFGLI++     IR+V NLR+CGDCH  +K+ S++  REI+IRD  RF
Sbjct: 615 HFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRF 674

Query: 632 HRFQGGQCSCRDYW 645
           H F  G CSCRDYW
Sbjct: 675 HTFIDGSCSCRDYW 688


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/653 (32%), Positives = 342/653 (52%), Gaps = 81/653 (12%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV--FTGDLGYAQQIIRQGDEPEIKI 106
           +S +S+   +++H+  + T   +D  +S  + +        +L +A ++      P + +
Sbjct: 38  KSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFV 97

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
           +N II+  L N  P +    Y  ++      NK                    ++ T+  
Sbjct: 98  FNIIIKGCLQNNEPCKAICCYYKMMIAHARPNK-------------------FTYPTLFK 138

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
             T+     EG+ + + +  +G+S D     + I       ++E  +   +  E+    +
Sbjct: 139 ACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGAR--RMLGEDGNSDV 196

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
                N ++D Y KCG++  A++L   + +++ +V  W  +VSG  K    +EAR LF+E
Sbjct: 197 I--CFNAMIDGYLKCGEVEAAKELF--WSMEDKNVGSWNVMVSGMAKCGMIEEARELFNE 252

Query: 287 MVERNLISWTLMISGMLN--------------QDAEFKYK---------SCASIGALYHG 323
           M E+N ISW+ MI G +               Q  E + +         +CA++GAL  G
Sbjct: 253 MKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQG 312

Query: 324 IWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMA 368
            W+H Y+  N  S D +               ++A+D+F ++ +K V+ W ++I    M 
Sbjct: 313 RWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMH 372

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G A+ AI+LF +M++   +P+ +T + +LSAC+H G+VDEG    +    VY I+P M+H
Sbjct: 373 GRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEH 432

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           YGC+VDLLGRAG L E+   + SMP+ P  ++W +LL ACR H +V+L E   K L E +
Sbjct: 433 YGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELE 492

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           P N G + LL+NIYA+AGR DD++ +R  +++ G+K   G S+I+  G VH+F  GD  +
Sbjct: 493 PQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSH 552

Query: 549 PHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSE 592
           P  + IYLML  +   L+ +G    + Q                H E+LA+AFGLI+T  
Sbjct: 553 PQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKP 612

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            TTI +V NLR+C DCHS  K+ SQVY+REI++RD  R+H F+ G CSC+D+W
Sbjct: 613 GTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/560 (36%), Positives = 301/560 (53%), Gaps = 56/560 (10%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           C ++ +   LFDK+ + D ++WN +I  Y   G Y + L L   M +  + PD V + ++
Sbjct: 169 CRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTV 228

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +SA     +L  G+ +H F++++   I   L   L++MY  CG +  A+K+     +   
Sbjct: 229 LSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYD--GLSSK 286

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--------- 310
            +++ T ++SGY K     +AR +FD+M+ER+L+ W+ MISG    D   +         
Sbjct: 287 HLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEML 346

Query: 311 --------------YKSCASIGALYHGIWVHVYIKK---------NQISID------NIE 341
                           +C+ +GAL    W+H Y+ +         N   ID      N+ 
Sbjct: 347 QKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLV 406

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A ++F  +  KNV  W+S+I A+AM G+A  AI LF  M+E   +P+ VTFI +L AC 
Sbjct: 407 KAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACG 466

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GLV+EG    S     + I P  +HYGCMVDL  RA  L ++   I +MP  P+V IW
Sbjct: 467 HAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIW 526

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            SL+ AC+ H   +L E A K L E +P +DGA V+L+NIYAK  R +D+  IR  +   
Sbjct: 527 GSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYK 586

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE----------------IEMTL 565
           G+ K+   S IE    VH F   D ++  S+EIY  L+E                I + L
Sbjct: 587 GISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDL 646

Query: 566 QQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
           +++  +E  L H E+LAV +GLIS   ++ IRIV NLRIC DCHSFMK+ S+VY  EIV+
Sbjct: 647 EEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVV 706

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH   GG CSCRDYW
Sbjct: 707 RDRTRFHHCSGGICSCRDYW 726


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/566 (36%), Positives = 325/566 (57%), Gaps = 61/566 (10%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L + G L E  +L  + P R+V+SW ++I+ Y+  G   + +   + M ++GV+PDEV +
Sbjct: 181 LVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAV 240

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL---LGR 253
           +  +SA +KL++L++G+ LHL + +  ++++ +L+  L+DMY KCG I +AQ +   +GR
Sbjct: 241 IGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGR 300

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDA-- 307
            +  E     W  ++ GY K    D AR LFD+M  R++I++  MI+G ++    +DA  
Sbjct: 301 GQKPEP----WNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQ 356

Query: 308 -------------EFKYKS----CASIGALYHGIWVHVYIKKNQISID------------ 338
                         F   S    CAS+GAL HG  +H  I++  +  D            
Sbjct: 357 LFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYM 416

Query: 339 ---NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
               ++ A  +F  + E++V+ WT++IA  A  G  + A++ F +M+  G +P  VT+IA
Sbjct: 417 KCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIA 476

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           +L+ACSH  L+DEG    ++   ++ + P+++HYGCM+DLL R+G L+E+ + + +MP+ 
Sbjct: 477 VLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQ 536

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
           P+  IW S+L ACR H+N+ LA HA +HL +  P  D  +V L NIY  + +  D  R+R
Sbjct: 537 PNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVR 596

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----- 570
           M + + G+KK  GYS I   G VHKF + D  +P + EI  M+ EI   L+  G      
Sbjct: 597 MLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTS 656

Query: 571 -----------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVY 619
                      ++  L H E++A+AFGLIS      I IV NLR+C DCHS +K+ SQ++
Sbjct: 657 RIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLW 716

Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
           NREI++RD  RFH F+ G CSC D+W
Sbjct: 717 NREIIVRDRSRFHHFRDGACSCNDFW 742



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 163/398 (40%), Gaps = 80/398 (20%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMI-SCYTSMGMYREGLGLLSKMGAEGVSPDEVTM--VSL 199
           L+ V  LFD+LP+     ++T + +C  +       + LL +M + GV     T   V  
Sbjct: 51  LRYVLSLFDRLPHSTTFLFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFR 110

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDE 258
             A        +   LH     + +  +  L+ N L+ MY   G   +A++     EI  
Sbjct: 111 CCAAGARARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFD--EIPA 168

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYK-- 312
            D V+W T++ G V+    DEARRL  +  ERN++SWT +I+G        DA + +   
Sbjct: 169 KDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCM 228

Query: 313 --------SCASIGAL---------YHGIWVHVYIKKNQISI-DNIELAY-DLFS---EI 350
                     A IGAL           G  +H+ + + +I + DN+ +A  D+++   +I
Sbjct: 229 LSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDI 288

Query: 351 SEKNVYL-----------WTSVIAAYAMAGHA---------------------------- 371
           ++                W ++I  Y   GH                             
Sbjct: 289 AQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHS 348

Query: 372 ---QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF-LSKKSRVYNIKPKMQ 427
              + A+ LF++M   G + D  T ++LL+AC+  G +  G     S + R+  ++  + 
Sbjct: 349 GRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRI--VEEDVY 406

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
               ++D+  + G ++E+      M    DV  W++++
Sbjct: 407 LGTALLDMYMKCGRVDEATAVFHRMG-ERDVHTWTAMI 443


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/674 (30%), Positives = 345/674 (51%), Gaps = 87/674 (12%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           S  S+   E++H  ++ +       +   +  F +    +  A+++  +  E ++  WNS
Sbjct: 207 SLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 266

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTV---------------------------------- 135
           II   + NG  ++  ++++ ++   +                                  
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC 326

Query: 136 -------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
                        + +KCG L     +F ++ +R V+S+ +MI+ Y   G+  E + L  
Sbjct: 327 FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 386

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           +M  EG+SPD  T+ ++++   + R L+ GK +H +++E+ +     + N L+DMY KCG
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
            + EA+ +     +   D++ W T++ GY K+   +EA  LF+ ++E    S        
Sbjct: 447 SMQEAELVFSEMRVK--DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPD------ 498

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLF 347
             +       +CAS+ A   G  +H YI +N    D                + LA+ LF
Sbjct: 499 -ERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
            +I+ K++  WT +IA Y M G  ++AI LF +M + G + D+++F++LL ACSH GLVD
Sbjct: 558 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG+ F +       I+P ++HY C+VD+L R G L ++  FI +MPIPPD +IW +LL  
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H +VKLAE   + + E +P N G +VL+ANIYA+A + + + R+R ++   GL+K  
Sbjct: 678 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 737

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
           G S IE  G V+ F +GD  NP +E I   L ++   + ++G                 +
Sbjct: 738 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 797

Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
           E    H E+LA+A G+IS+     IR+  NLR+CGDCH   K  S++  REIV+RD+ RF
Sbjct: 798 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 857

Query: 632 HRFQGGQCSCRDYW 645
           H+F+ G CSCR +W
Sbjct: 858 HQFKDGHCSCRGFW 871



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 171/349 (48%), Gaps = 31/349 (8%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           +++   CG LKE  ++FD++     + WN +++     G +   +GL  KM + GV  D 
Sbjct: 136 SLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDS 195

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T   +  + + LR +  G+ LH F+ +S      S+ N LV  Y K  ++  A+K+   
Sbjct: 196 YTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFD- 254

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEF 309
            E+ E DV+ W ++++GYV +   ++   +F +M    +E +L +   + +G  +     
Sbjct: 255 -EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS---- 309

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQ----------ISIDNIELAYDLFSEISEKNVYLWT 359
                 S+G   H I V     +                +++ A  +F E+S+++V  +T
Sbjct: 310 ---RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYT 366

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKK 416
           S+IA YA  G A +A+ LF EMEE G  PD  T  A+L+ C+   L+DEG   ++++ + 
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN 426

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
              ++I         ++D+  + G ++E+    + M +  D+  W++++
Sbjct: 427 DLGFDIFVS----NALMDMYAKCGSMQEAELVFSEMRV-KDIISWNTII 470



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 185/449 (41%), Gaps = 76/449 (16%)

Query: 131 VTRTVLLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           V + V+ N+   L+ V    D +   +R V   NT +  +   G     + LL   G   
Sbjct: 33  VRKYVIFNR-ASLRTVSDCVDSITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWD 91

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           + P   T+ S++      + L+ GK +  F+  +   I  +L + L  MY  CG + EA 
Sbjct: 92  IDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEAS 149

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
           ++    +I++   + W  L++   KS +   +  LF +M          M SG+      
Sbjct: 150 RVFDEVKIEK--ALFWNILMNELAKSGDFSGSIGLFKKM----------MSSGVEMDSYT 197

Query: 309 FK--YKSCASIGALYHGIWVHVYIKKNQI----SIDN-----------IELAYDLFSEIS 351
           F    KS +S+ +++ G  +H +I K+      S+ N           ++ A  +F E++
Sbjct: 198 FSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMT 257

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-- 409
           E++V  W S+I  Y   G A+K + +F++M  +G + D  T +++ + C+   L+  G  
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 410 --------------------YDFLSKKSRVYNIKPKMQH--------YGCMVDLLGRAGH 441
                                D  SK   + + K   +         Y  M+    R G 
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377

Query: 442 LEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
             E+      M    I PDV   +++L  C  ++ +   +   + + E D    G  + +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL---GFDIFV 434

Query: 499 AN----IYAKAGRLDDMSRI--RMKLRDM 521
           +N    +YAK G + +   +   M+++D+
Sbjct: 435 SNALMDMYAKCGSMQEAELVFSEMRVKDI 463


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/672 (31%), Positives = 347/672 (51%), Gaps = 90/672 (13%)

Query: 37  VCPVSLDVIMVERSCSSIDE---FERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P    +  V  SC++       +++HS ++   L     ++  +      TGDL  A+
Sbjct: 103 VLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAK 162

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
            +  +        WN++I   +                        CG++      F+ L
Sbjct: 163 VVFDRMKLRNTSSWNAMISLHM-----------------------NCGRVDLALAQFELL 199

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMG 212
             RD++SWN+MI+     G   E L   S +  +  + PD  ++ S +SA   L  L  G
Sbjct: 200 SERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFG 259

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K +H ++  +    SG++ N L+ MY K G +  A++++ +  I ++DV+ +T L++GYV
Sbjct: 260 KQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYV 319

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGM----LNQDAEFKYKS--------------- 313
           K  +   AR++F+ + + ++++WT MI G     LN DA   +K+               
Sbjct: 320 KLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAA 379

Query: 314 ----CASIGALYHGIWVH--------------------VYIKKNQISIDNIELAYDLFSE 349
                +S+ +L HG  +H                    +Y K    SI+     ++L  +
Sbjct: 380 MLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAG--SINGARKVFNLLRQ 437

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
              ++   WTS+I A A  G  ++AI+LF +M   G KPD +T++ +LSAC+HGGLV++G
Sbjct: 438 --NRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQG 495

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
             +      V+ I P + HY CMVDL GRAG L+E+  F+ +MP+ PDV  W SLL +C+
Sbjct: 496 RSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCK 555

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            ++NV LA+ A + L   +P N GA+  LAN+Y+  G+ DD ++IR  ++  G+KK+ G 
Sbjct: 556 VYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGL 615

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ---ETSLQ---------- 576
           S ++     H F   D  +P  +EIY M+++I   +++ G     E+ L           
Sbjct: 616 SWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQI 675

Query: 577 ---HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
              H E+LA+AFG+IST E TT+RI+ NLR+C DCH+ +K  S++ +REI++RD  RFH 
Sbjct: 676 LRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHH 735

Query: 634 FQGGQCSCRDYW 645
           F+ G CSC+DYW
Sbjct: 736 FKDGSCSCKDYW 747



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 163/406 (40%), Gaps = 77/406 (18%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K GKL++  Q+FD +P RD +SW T+I  Y  MG + + + +   M  + V P + T+ +
Sbjct: 53  KQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTN 112

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++++        +GK +H F+ +  +     + N L++MY K G +  A+ +  R ++  
Sbjct: 113 VLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRN 172

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------------L 303
                W  ++S ++     D A   F+ + ER+++SW  MI+G                +
Sbjct: 173 TSS--WNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI 230

Query: 304 NQDAEFK---------YKSCASIGALYHGIWVHVYIKKNQ-------------------- 334
            +D   K           +CA++  L  G  +H YI +                      
Sbjct: 231 LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGG 290

Query: 335 ----------------------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                                       + + +I  A  +F+ + + +V  WT++I  Y 
Sbjct: 291 VEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYV 350

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN-IKPK 425
             G    AI++F  M   G +P+  T  A+LSA S    ++ G    +   R    + P 
Sbjct: 351 QNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPS 410

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           + +   +  +  +AG +  +      +    D   W+S++ A   H
Sbjct: 411 VGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 46/234 (19%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           L+N L+++Y K G   +A  L     +       W T++SGY K  + ++A ++FD +  
Sbjct: 12  LMNNLMNLYAKTGFHLDAHDLFNEMPVKTT--FSWNTILSGYAKQGKLEKAHQVFDLIPV 69

Query: 290 RNLISWTLMISGMLNQDAEFK------------------------YKSCASIGALYHGIW 325
           R+ +SWT +I G  NQ   F+                          SCA+ G+   G  
Sbjct: 70  RDSVSWTTIIVG-YNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKK 128

Query: 326 VHVYIKK----------NQI-----SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           VH ++ K          N +        ++++A  +F  +  +N   W ++I+ +   G 
Sbjct: 129 VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGR 188

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
               +DL L   E  ++ D V++ ++++ C+  G  +E   F S   +  ++KP
Sbjct: 189 ----VDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/674 (30%), Positives = 345/674 (51%), Gaps = 87/674 (12%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           S  S+   E++H  ++ +       +   +  F +    +  A+++  +  E ++  WNS
Sbjct: 56  SLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 115

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTV---------------------------------- 135
           II   + NG  ++  ++++ ++   +                                  
Sbjct: 116 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC 175

Query: 136 -------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
                        + +KCG L     +F ++ +R V+S+ +MI+ Y   G+  E + L  
Sbjct: 176 FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 235

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           +M  EG+SPD  T+ ++++   + R L+ GK +H +++E+ +     + N L+DMY KCG
Sbjct: 236 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 295

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
            + EA+ +     +   D++ W T++ GY K+   +EA  LF+ ++E    S        
Sbjct: 296 SMQEAELVFSEMRVK--DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPD------ 347

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLF 347
             +       +CAS+ A   G  +H YI +N    D                + LA+ LF
Sbjct: 348 -ERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 406

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
            +I+ K++  WT +IA Y M G  ++AI LF +M + G + D+++F++LL ACSH GLVD
Sbjct: 407 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 466

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG+ F +       I+P ++HY C+VD+L R G L ++  FI +MPIPPD +IW +LL  
Sbjct: 467 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 526

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H +VKLAE   + + E +P N G +VL+ANIYA+A + + + R+R ++   GL+K  
Sbjct: 527 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 586

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
           G S IE  G V+ F +GD  NP +E I   L ++   + ++G                 +
Sbjct: 587 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 646

Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
           E    H E+LA+A G+IS+     IR+  NLR+CGDCH   K  S++  REIV+RD+ RF
Sbjct: 647 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 706

Query: 632 HRFQGGQCSCRDYW 645
           H+F+ G CSCR +W
Sbjct: 707 HQFKDGHCSCRGFW 720



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 167/347 (48%), Gaps = 33/347 (9%)

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FD++     + WN +++     G +   +GL  KM + GV  D  T   +  + + LR +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
             G+ LH F+ +S      S+ N LV  Y K  ++  A+K+    E+ E DV+ W ++++
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFD--EMTERDVISWNSIIN 118

Query: 270 GYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
           GYV +   ++   +F +M    +E +L +   + +G  +           S+G   H I 
Sbjct: 119 GYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS-------RLISLGRAVHSIG 171

Query: 326 VHVYIKKNQ----------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           V     +                +++ A  +F E+S+++V  +TS+IA YA  G A +A+
Sbjct: 172 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 231

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCM 432
            LF EMEE G  PD  T  A+L+ C+   L+DEG   ++++ +    ++I         +
Sbjct: 232 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS----NAL 287

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLL--RACRCHQNVKLA 477
           +D+  + G ++E+    + M +  D+  W++++   +  C+ N  L+
Sbjct: 288 MDMYAKCGSMQEAELVFSEMRV-KDIISWNTIIGGYSKNCYANEALS 333


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 308/541 (56%), Gaps = 42/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG L    ++F+++  + V+SW +MI+ Y   G+    + L  +M + GV PD   
Sbjct: 397 MYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYA 456

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S+++A     +L+ GK +H ++ E+ ++ +  + N L DMY KCG + +A  +     
Sbjct: 457 VTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFS--H 514

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + + DV+ W T++ GY K++  +EA  LF EM   +    T +   +          +CA
Sbjct: 515 MKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACIL---------PACA 565

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
           S+ AL  G  +H Y  +N  S D                + LA  LF  I  K++  WT 
Sbjct: 566 SLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTV 625

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +IA Y M G+  +AI+ F +M  TG +PD+V+FI++L ACSH GL+DEG+   +   +  
Sbjct: 626 MIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKEC 685

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I+P ++HY CMVDLL R G+L ++  FI +MPI PD +IW +LL  CR H +VKLAE  
Sbjct: 686 QIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKV 745

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + + E +P N G +VLLANIYA+A + +++ ++R K+   GLKK  G S IE  G ++ 
Sbjct: 746 AERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINI 805

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVA 584
           F +GD   P +++I L+L  +   ++++G                +E +L  H E+LA+A
Sbjct: 806 FVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMA 865

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FG+++     TIR+  NLR+CGDCH   K  S+  +REI++RD+ RFH F+ G CSCR Y
Sbjct: 866 FGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGY 925

Query: 645 W 645
           W
Sbjct: 926 W 926



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 195/428 (45%), Gaps = 90/428 (21%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           SI +  R+ S + ++ +M D  +  ++    V  GDL   + +  +  E +I +WN +I 
Sbjct: 165 SIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMIS 224

Query: 113 --------NQLINGYPQ-----------------EVFA---------------------- 125
                    + IN + Q                 + FA                      
Sbjct: 225 EYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNS 284

Query: 126 --------IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
                   I  Y V R V   +C +     +LFD+L +RDVISWN+MIS Y   G+   G
Sbjct: 285 YNTVVNSLISFYFVGRKV---RCAQ-----KLFDELTDRDVISWNSMISGYVKNGLDDRG 336

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF-LEESTMKISGSLLNYLVD 236
           + +  KM   GV  D  TMV++  A   +  L +GK LH + ++ +T+       N L+D
Sbjct: 337 IEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLD 396

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY KCG +  A ++  R  +DE  VV WT++++GYV+    D A +LFDEM  R ++   
Sbjct: 397 MYSKCGDLNSAIRVFER--MDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDV 454

Query: 297 LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIE 341
             ++ +LN        +CA  G L  G  VH YI++N +  +               +++
Sbjct: 455 YAVTSILN--------ACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMK 506

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A+D+FS + +K+V  W ++I  Y       +A+ LF EM+   +KPD  T   +L AC+
Sbjct: 507 DAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRE-SKPDGTTVACILPACA 565

Query: 402 HGGLVDEG 409
               +D+G
Sbjct: 566 SLAALDKG 573



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 167/346 (48%), Gaps = 34/346 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG LKE   +FDKL    +  WN MIS Y+  G Y E + L  +M   G+ P+  T  S
Sbjct: 197 KCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSS 256

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++     +  +E G+ +H  + +       +++N L+  YF   K+  AQKL    E+ +
Sbjct: 257 ILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD--ELTD 314

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            DV+ W +++SGYVK+   D    +F +M+   +    + ++ M+N      + +CA+IG
Sbjct: 315 RDVISWNSMISGYVKNGLDDRGIEIFIKML---VFGVDIDLATMVNV-----FVACANIG 366

Query: 319 ALYHGIWVHVY----------IKKNQISID------NIELAYDLFSEISEKNVYLWTSVI 362
            L  G  +H Y          ++ N   +D      ++  A  +F  + EK V  WTS+I
Sbjct: 367 TLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMI 426

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRV 419
             Y   G +  AI LF EM+  G  PD     ++L+AC+  G +  G   +D++    R 
Sbjct: 427 TGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYI----RE 482

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            N++        + D+  + G ++++ +  + M    DV  W++++
Sbjct: 483 NNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMI 527



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 158/379 (41%), Gaps = 65/379 (17%)

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           +++ L + R  +RD   G+ +   +E S + I G L   LV MY KCG + E + +  + 
Sbjct: 155 SILQLCAERKSIRD---GRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDK- 210

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + E  + LW  ++S Y  S    E+  LF +M+E  +   +   S +L        K  
Sbjct: 211 -LSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSIL--------KCF 261

Query: 315 ASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWT 359
           A++  +  G  VH  I K   +  N               +  A  LF E+++++V  W 
Sbjct: 262 AAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWN 321

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           S+I+ Y   G   + I++F++M   G   D  T + +  AC++ G +  G    S   + 
Sbjct: 322 SMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKA 381

Query: 420 YNIKPKMQHYGCMVDLLGRAGHL-----------EESANFITSM---------------- 452
             +  +++    ++D+  + G L           E++    TSM                
Sbjct: 382 ATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKL 441

Query: 453 -------PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAK 504
                   + PDV   +S+L AC  + N+K  +    ++ E +   N      L ++YAK
Sbjct: 442 FDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAK 501

Query: 505 AGRLDDMSRI--RMKLRDM 521
            G + D   +   MK +D+
Sbjct: 502 CGSMKDAHDVFSHMKKKDV 520


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/670 (31%), Positives = 346/670 (51%), Gaps = 91/670 (13%)

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           +  +IH+ L+   L     + T++       GD+ +A+Q+      P++  WN+II    
Sbjct: 36  QLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYS 95

Query: 116 INGYPQEVFAIYLYLVTRTV---------LLNKCGKLKEV-------CQLFD-------- 151
            N + Q+   +Y  +    V         LL  CG L  +        Q+F         
Sbjct: 96  RNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVF 155

Query: 152 -------------------------KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                                     LP R ++SW  ++S Y   G   E L + S+M  
Sbjct: 156 VQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRK 215

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
             V PD V +VS+++A T L+DLE G+++H  + +  ++    LL  L  MY KCG++  
Sbjct: 216 MDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVAT 275

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+ L  +  +   +++LW  ++SGY K+    +A  LF EM+ +++   T+ I+  ++  
Sbjct: 276 AKILFDK--MKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAIS-- 331

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +CA +G+L    W+  Y+ ++    D               ++E A  +F    
Sbjct: 332 ------ACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTL 385

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +++V +W+++I  Y + G A++AI L+  ME  G  P+ VTF+ LL AC+H G+V EG+ 
Sbjct: 386 DRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWW 445

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           F ++ +  + I P+ QHY C++DLLGRAGHL+++   I  MP+ P V++W +LL AC+ H
Sbjct: 446 FFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           ++V+L ++A + L   DP N G +V L+N+YA A   D ++ +R+++++ GL K +G S 
Sbjct: 505 RHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL 575
           +E  G +  F  GD  +P  EEI   +  IE  L++ G                 +ET  
Sbjct: 565 VEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLC 624

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H ER+ +A+GLIST + TT+RI  NLR C +CH+  K+ S++  REIV+RD  RFH F+
Sbjct: 625 SHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFK 684

Query: 636 GGQCSCRDYW 645
            G CSC DYW
Sbjct: 685 DGVCSCGDYW 694


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/532 (37%), Positives = 309/532 (58%), Gaps = 49/532 (9%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LFD +    V+ WN +I+ Y   G + E + +   M   GV+ DE+T+VS+++A  ++ D
Sbjct: 176 LFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGD 235

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            ++GK +  +++E  +  + +L+  L+DMY KCG++G+A++L     +   DVV W+ ++
Sbjct: 236 AKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFD--GMQSRDVVAWSAMI 293

Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324
           SGY ++++  EA  LF EM    VE N ++   ++S            +CA +GAL  G 
Sbjct: 294 SGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLS------------ACAVLGALETGK 341

Query: 325 WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
           WVH YI++ ++S+                 I+ A + F  +  KN + WT++I   A  G
Sbjct: 342 WVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNG 401

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
             ++A++LF  M +   +P  VTFI +L ACSH  LV+EG       ++ Y IKP+ +HY
Sbjct: 402 RGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHY 461

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GC+VDLLGRAG ++E+  FI +MPI P+  IW +LL +C  H+NV++ E A K +   +P
Sbjct: 462 GCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNP 521

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            + G ++LL+NIYA  G+  + + IR +++D G++K  G SLIE  G V +F + D  +P
Sbjct: 522 SHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHP 581

Query: 550 HSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEK 593
             +EIY  + E+   ++  G                +E S+  H E+LA+AFGL+     
Sbjct: 582 QLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPG 641

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            TIR+  NLR+C DCHS  K+ S+VYNREIV+RD  RFH F+ G CSC DYW
Sbjct: 642 ATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 138/357 (38%), Gaps = 82/357 (22%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMG 212
           P      +N ++      G   + L L  +M     V PD+ T+   + + +++  L++G
Sbjct: 79  PPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVG 138

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           + +  +  +  +     +L+ L+ MY  C  +  AQ                        
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQ------------------------ 174

Query: 273 KSNERDEARRLFDEMVERNLISWTLMIS----------------GMLNQDAEFK------ 310
                     LFD + E  ++ W  +I+                GML     F       
Sbjct: 175 ---------LLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVS 225

Query: 311 -YKSCASIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSEISEK 353
              +C  IG    G WV  Y+ +  + + N  L                A  LF  +  +
Sbjct: 226 VVTACGRIGDAKLGKWVAEYVDEKGL-VRNRNLMTALIDMYAKCGELGKARRLFDGMQSR 284

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---Y 410
           +V  W+++I+ Y  A   ++A+ LF EM+    +P+ VT +++LSAC+  G ++ G   +
Sbjct: 285 DVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVH 344

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
            ++ +K     I         +VD   + G ++++     SMP+  +   W++L++ 
Sbjct: 345 SYIRRKRLSLTIILGTA----LVDFYAKCGCIDDAVEAFESMPV-KNSWTWTALIKG 396



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 56/342 (16%)

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K  H  LE +    S +LL Y V ++    ++G    L             +  L+   +
Sbjct: 50  KCFHSLLEAAAA--SPTLLPYAVSLF----RLGPRPPL---------STPCYNVLMRALL 94

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
            +   ++A  LF EM++   +                  KSC+ +  L  G  +  Y  K
Sbjct: 95  HAGHPEDALHLFVEMLDVASVCPD-------QHTVACALKSCSRMCTLDVGRGIQAYAVK 147

Query: 333 NQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
             +  D               ++  A  LF  + E  V +W ++I AY   G+  + +++
Sbjct: 148 RGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEM 207

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVD 434
           F  M E G   D++T +++++AC   G    G    +++ +K  V N          ++D
Sbjct: 208 FKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRN----RNLMTALID 263

Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLL----RACRCHQNVKLAEHAFKHLTETDPL 490
           +  + G L ++      M    DV  WS+++    +A +C +   LA  +   L E +P 
Sbjct: 264 MYAKCGELGKARRLFDGMQ-SRDVVAWSAMISGYTQADQCRE--ALALFSEMQLAEVEP- 319

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           ND   V + +  A  G L+    +   +R    +K+L  ++I
Sbjct: 320 NDVTMVSVLSACAVLGALETGKWVHSYIR----RKRLSLTII 357



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 126 IYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
           + L ++  T L++   KCG + +  + F+ +P ++  +W  +I    + G  RE L L S
Sbjct: 352 LSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFS 411

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            M    + P +VT + ++ A +    +E G ++     ++  +K        +VD+  + 
Sbjct: 412 SMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRA 471

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
           G I EA + +    I E + V+W  L+S
Sbjct: 472 GLIDEAYQFIRTMPI-EPNAVIWRALLS 498


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/625 (35%), Positives = 343/625 (54%), Gaps = 75/625 (12%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           SI +  RIHS + + ++  D  + +++    V  GDL   ++I  +    ++ +WN    
Sbjct: 116 SIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWN---- 171

Query: 113 NQLINGYPQ-EVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
             L+NGY +   F   L L  R   L    +++   +LFD+L +RDVISWN+MIS Y S 
Sbjct: 172 -LLMNGYAKIGNFRESLSLFKRMRELG-IRRVESARKLFDELGDRDVISWNSMISGYVSN 229

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G+  +GL L  +M   G++ D  TMVS                           +  +L 
Sbjct: 230 GLSEKGLDLFEQMLLLGINTDLATMVS---------------------------VELTLN 262

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L+DMY K G +  A ++     + E  VV WT++++GY +    D + RLF EM + +
Sbjct: 263 NCLLDMYSKSGNLNSAIQVF--ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKED 320

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN------------ 339
           L   ++ ++ +L         +CAS+ AL  G  +H +I +N  S+D             
Sbjct: 321 LFPNSITMACIL--------PACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLK 372

Query: 340 ---IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
              + LA  LF  I EK++  WT +IA Y M G+  +AI  F EM  +G +PD+V+FI++
Sbjct: 373 CGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISI 432

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L ACSH GL+DEG+ F +       I+PK +HY C+VDLL RAG+L ++  FI  MPI P
Sbjct: 433 LYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEP 492

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
           D +IW +LL  CR + +VKLAE   +H+ E +P N G +VLLANIYA+A + +++ ++R 
Sbjct: 493 DATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRE 552

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------ 570
           ++   GL+K  G S IE  G VH F +GD  +P + +I L+L +    ++++G       
Sbjct: 553 RIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRY 612

Query: 571 ---------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                    +E +L  H E++A+AFG++S     T+R+  NLR+CGDCH   K  S++  
Sbjct: 613 ALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVK 672

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           R+I++RD+ RFH F+ G CSCR +W
Sbjct: 673 RDIILRDSNRFHHFKDGSCSCRGHW 697



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 135/283 (47%), Gaps = 37/283 (13%)

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EV-TMVSLISARTKLRDLEMGKNL 215
           +  +N  I  +  +G  R  + L++    +   PD E+ T  S++     L+ ++ G+ +
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELIN----QSPKPDLELRTYCSVLQLCADLKSIQDGRRI 123

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK-S 274
           H  ++ + +++ G L + LV MY  CG + E +++  +  +    V LW  L++GY K  
Sbjct: 124 HSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDK--VANEKVFLWNLLMNGYAKIG 181

Query: 275 NER-----------------DEARRLFDEMVERNLISWTLMISGMLNQDAEFK----YKS 313
           N R                 + AR+LFDE+ +R++ISW  MISG ++     K    ++ 
Sbjct: 182 NFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQ 241

Query: 314 CASIGALYH-GIWVHVYIKKNQISID------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
              +G        V V +  N   +D      N+  A  +F  + E++V  WTS+IA YA
Sbjct: 242 MLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYA 301

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
             G +  ++ LF EME+    P+ +T   +L AC+    ++ G
Sbjct: 302 REGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERG 344


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/559 (35%), Positives = 307/559 (54%), Gaps = 56/559 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     +FD++   +   WNTMI  Y++     E L L   M    V  +  T   L+
Sbjct: 66  GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A + +  LE  + +H  + +          N L+++Y K G I  A+ L    ++D+ D
Sbjct: 126 KACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFD--QVDQRD 183

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--------------QD 306
            V W +++ GY K  E + A  +F+ M ERN+ISWT MISG +               Q 
Sbjct: 184 TVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT 243

Query: 307 AEFKY---------KSCASIGALYHGIWVHVYIKKNQISID---------------NIEL 342
           A  K          ++CA +G L  G W+H YIKK++I ID               ++E 
Sbjct: 244 AGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEE 303

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A ++F ++ EK V +WT++I+ YA+ G  ++A++ F++M+  G +P+Q+TF  +L+ACSH
Sbjct: 304 AIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSH 363

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GLV E         R++  KP ++HYGCMVDLLGRAG L+E+   I +MP+ P+ +IW 
Sbjct: 364 AGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWG 423

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL AC  H N++L +   K L + DP + G ++ LA+I+A AG  +  +R+R ++++ G
Sbjct: 424 ALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQG 483

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL------- 575
           + K  G S+I   G  H+F +GD  +P  +EI  ML +I   L+++G +           
Sbjct: 484 VSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLE 543

Query: 576 ---------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                     H E+LAV FGLIST    TIRIV NLR+C DCH+ +K+ S+VY REI++R
Sbjct: 544 DKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMR 603

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F+ G C+C DYW
Sbjct: 604 DRTRFHLFKDGNCTCGDYW 622



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 168/365 (46%), Gaps = 68/365 (18%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           S S+++E ++IH+H+I      +   +  +      +GD+  A+ +  Q D+ +   WNS
Sbjct: 130 SMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNS 189

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
                +I+GY                   KCG+++   ++F+ +P R++ISW +MIS   
Sbjct: 190 -----MIDGY------------------TKCGEIEMAYEIFNHMPERNIISWTSMISGCV 226

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
             G  +E L L  +M   G+  D V +VS + A   L  L+ GK +H ++++  ++I   
Sbjct: 227 GAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI 286

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-- 287
           L   L+DMY KCG + EA ++  + E  E  V +WT ++SGY       EA   F +M  
Sbjct: 287 LGCVLIDMYAKCGDLEEAIEVFRKME--EKGVSVWTAMISGYAIHGRGREALEWFMKMQT 344

Query: 288 --VERNLISWTLMISGM----LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIE 341
             VE N +++T +++      L  +A+  ++S   I    HG          + SI++  
Sbjct: 345 AGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERI----HGF---------KPSIEHYG 391

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
              DL                     AG  ++A +L   +E    KP+   + ALL+AC 
Sbjct: 392 CMVDLLGR------------------AGLLKEAEEL---IENMPVKPNAAIWGALLNACH 430

Query: 402 -HGGL 405
            HG L
Sbjct: 431 IHGNL 435


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 292/528 (55%), Gaps = 41/528 (7%)

Query: 149  LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
            +F+ +PN     WN MI  + + G +   L L SKM  +G+ PD+      + +   L D
Sbjct: 774  VFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSD 833

Query: 209  LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            L+ GK +H  L          +   LVDMY KCG I  A+ +  +  +   D+V WT+++
Sbjct: 834  LQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVR--DLVSWTSMI 891

Query: 269  SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
            SGY  +    E    FD M    +I   + I  +L         +C ++GAL  G W H 
Sbjct: 892  SGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVL--------LACGNLGALRKGEWFHS 943

Query: 329  YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            Y+ +     D               +++LA  LF E + K++  W+++IA+Y + GH +K
Sbjct: 944  YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRK 1003

Query: 374  AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
            AIDLF +M + G +P  VTF  +LSACSH GL++EG  +    +  + I  K+ +Y CMV
Sbjct: 1004 AIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMV 1063

Query: 434  DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
            DLLGRAG L E+ + I +MP+ PD SIW SLL ACR H N+ LAE    HL   DP++ G
Sbjct: 1064 DLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAG 1123

Query: 494  AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
             HVLL+NIYA   R +++ ++R  +   G  K  G+SL+E    VHKF  GD  +P  E+
Sbjct: 1124 YHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEK 1183

Query: 554  IYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIR 597
            +Y  L E+   ++  G                +E +L  H ERLA+AFGLI+TS  TT+R
Sbjct: 1184 LYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLR 1243

Query: 598  IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            I  NLRICGDCH+ +K+ S++ NR I++RD  RFHRF+ G CSC DYW
Sbjct: 1244 ITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 168/553 (30%), Positives = 284/553 (51%), Gaps = 58/553 (10%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY---- 127
           D  + + + E     G +G A ++  +   P+  +W S++     N  P+E  A++    
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 128 ------LYLVTRTVLLNKCGKLKEV---------------------------------CQ 148
                 L  VT   +++ C +L  V                                 C+
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257

Query: 149 -----LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
                LF K+P +DVISW+TMI+CY +     E L L  +M  +   P+ VT+VS + A 
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 317

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
              R+LE GK +H        ++  S+   L+DMY KC    EA  L  R  + + DVV 
Sbjct: 318 AVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQR--LPKKDVVS 375

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE---FKYKSCASIGAL 320
           W  L+SGY ++    ++  +F  M+   +    + +  +L   +E   F+   C     +
Sbjct: 376 WVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVV 435

Query: 321 YHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
             G   +V++  + I +     ++  A  LF  +  ++V +W+S+IAAY + G   +A++
Sbjct: 436 RSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALE 495

Query: 377 LFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           +F +M +  T +P+ VTF+++LSACSH GLV+EG     +    Y ++P  +H+G MVDL
Sbjct: 496 IFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDL 555

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           LGR G L ++ + I  MPIP    +W +LL ACR H N+++ E A K+L   DP + G +
Sbjct: 556 LGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYY 615

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           +LL+NIYA  G+ D+++ +R ++++ GLKK  G S++E  G VH F + D F+P S++IY
Sbjct: 616 ILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIY 675

Query: 556 LMLNEIEMTLQQQ 568
            +L ++E  + ++
Sbjct: 676 ELLRKLEAQMGKE 688



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 176/351 (50%), Gaps = 36/351 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEV 194
           L  KC  L+   ++FD+ P+ +V  WN+ +  Y     + E L L   M    G +PD  
Sbjct: 45  LYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNF 104

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLG 252
           T+   + A   LR LE+GK +H F +++  +I   +   + LV++Y KCG++GEA K+  
Sbjct: 105 TIPIALKACAGLRMLELGKVIHGFAKKND-EIGSDMFVGSALVELYSKCGQMGEALKVFE 163

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN--------LISWTLMISGMLN 304
            ++    D VLWT++V+GY ++N+ +EA  LF +MV  +        L+S     + +LN
Sbjct: 164 EFQ--RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLN 221

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI----------ELAYDLFSEISEKN 354
             A          G+  HG+ +      +   ++++          ++A +LFS++ EK+
Sbjct: 222 VKA----------GSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKD 271

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           V  W+++IA YA    A +A++LF EM E   +P+ VT ++ L AC+    ++EG   + 
Sbjct: 272 VISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKK-IH 330

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           K +     +        ++D+  +    +E+ +    +P   DV  W +LL
Sbjct: 331 KIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALL 380



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 111/499 (22%), Positives = 214/499 (42%), Gaps = 99/499 (19%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           ++C++     ++HS +  T ++ D   +T++         L  A+++  +   P + +WN
Sbjct: 12  QACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWN 71

Query: 109 SIIEN----------------------------------------------QLINGYPQE 122
           S + +                                              ++I+G+ ++
Sbjct: 72  STLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKK 131

Query: 123 VFAIYLYLVTRTVLL---NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
              I   +   + L+   +KCG++ E  ++F++    D + W +M++ Y       E L 
Sbjct: 132 NDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALA 191

Query: 180 LLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
           L S+M   + V  D VT+VS++SA  +L +++ G  +H  +          L+N L+++Y
Sbjct: 192 LFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLY 251

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            K G    A  L  +  + E DV+ W+T+++ Y  +   +EA  LF EM+E+     ++ 
Sbjct: 252 AKTGCEKIAANLFSK--MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVT 309

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVH-VYIKKN-----QISIDNIEL---------A 343
           +   L        ++CA    L  G  +H + + K       +S   I++         A
Sbjct: 310 VVSAL--------QACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEA 361

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA---- 399
            DLF  + +K+V  W ++++ YA  G A K++ +F  M   G +PD V  + +L+A    
Sbjct: 362 VDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSEL 421

Query: 400 -------CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
                  C HG +V  G++     S V+           +++L  + G L ++      M
Sbjct: 422 GIFQQALCLHGYVVRSGFN-----SNVFV-------GASLIELYSKCGSLGDAVKLFKGM 469

Query: 453 PIPPDVSIWSSLLRACRCH 471
            I  DV IWSS++ A   H
Sbjct: 470 -IVRDVVIWSSMIAAYGIH 487



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 54/291 (18%)

Query: 49   RSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
            +SC+ + + +R   IH HL+      D  +   + +     GD+  A+ +  +    ++ 
Sbjct: 826  KSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLV 885

Query: 106  IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN--------------------------- 138
             W S+I     NGY  E    +  + +  V+ N                           
Sbjct: 886  SWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYV 945

Query: 139  --------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                                KCG L     LFD+   +D++ W+ MI+ Y   G  R+ +
Sbjct: 946  IQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAI 1005

Query: 179  GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVD 236
             L  +M   GV P  VT   ++SA +    LE GK ++  L      I+  L NY  +VD
Sbjct: 1006 DLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGK-MYFQLMTEEFVIARKLSNYACMVD 1064

Query: 237  MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            +  + G++ EA  L+    + E D  +W +L+      N  D A ++ D +
Sbjct: 1065 LLGRAGQLSEAVDLIENMPV-EPDASIWGSLLGACRIHNNLDLAEKIADHL 1114



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 112/272 (41%), Gaps = 48/272 (17%)

Query: 258  EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM--------------- 302
            + D  + T     YV  N  D A  +F+++       W +MI G                
Sbjct: 749  QYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSK 808

Query: 303  -----LNQDA---EFKYKSCASIGALYHGIWVHVYIK----KNQISID-----------N 339
                 L  D     F  KSCA +  L  G  +H ++      N + +D           +
Sbjct: 809  MMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGD 868

Query: 340  IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
            IE A  +F +++ +++  WTS+I+ YA  G+  + +  F  M  +G  P++V+ +++L A
Sbjct: 869  IEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLA 928

Query: 400  CSHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIP 455
            C + G + +G  F S     Y I+   +        ++D+  + G L + A  +      
Sbjct: 929  CGNLGALRKGEWFHS-----YVIQTGFEFDILVATAIMDMYSKCGSL-DLARCLFDETAG 982

Query: 456  PDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
             D+  WS+++ +   H + + A   F  + + 
Sbjct: 983  KDLVCWSAMIASYGIHGHGRKAIDLFDQMVKA 1014



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 29/219 (13%)

Query: 22   LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQ 78
            LG    MR S     V P  + ++ V  +C ++      E  HS++I T    D  ++T 
Sbjct: 904  LGFFDLMRSS----GVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATA 959

Query: 79   VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL-------- 130
            + +     G L  A+ +  +    ++  W+++I +  I+G+ ++   ++  +        
Sbjct: 960  IMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPS 1019

Query: 131  -VTRTVLLNKC---GKLKEVCQLFDKLPNRDVIS-----WNTMISCYTSMGMYREGLGLL 181
             VT T +L+ C   G L+E    F  +    VI+     +  M+      G   E + L+
Sbjct: 1020 HVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLI 1079

Query: 182  SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL--HLF 218
              M  E   PD     SL+ A     +L++ + +  HLF
Sbjct: 1080 ENMPVE---PDASIWGSLLGACRIHNNLDLAEKIADHLF 1115


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/551 (36%), Positives = 314/551 (56%), Gaps = 56/551 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F  L   +V  WNT +  +       + + L  ++    +SPD  T   ++ A ++L D
Sbjct: 69  IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           +  GK +H ++E+  ++ +  L N +V +Y  CG+IG A+K+  +  + + DV+ W  ++
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDK--MPQRDVITWNIMI 186

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--------------QDAEFKYK-- 312
           +  VK  + + A +LF EM ERN+ SWT MI G                 +DA       
Sbjct: 187 ARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEV 246

Query: 313 -------SCASIGALYHGIWVHVYIKKN----QISIDN-----------IELAYDLFSEI 350
                  +CA +G L  G  +H +  ++     I + N           +E A  +F  +
Sbjct: 247 TVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNM 306

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            E+ V  W+++IA  A  G A+ A+ LF +M  TG KP+ VTFI +L ACSH G+V++G 
Sbjct: 307 EERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGR 366

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
            + +  +R Y I P+++HYGCMVDL  RAG L+E+  FI +MPI P+  +W +LL  C+ 
Sbjct: 367 KYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKV 426

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           H+N+KLAE A +HL++ DPLNDG +V+L+NIYA+AGR +D++R+R  +RD G+KK  G+S
Sbjct: 427 HKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWS 486

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL-------------- 575
            I   G V+ F +GD  +P +EEI+    ++   ++ +G +  TS+              
Sbjct: 487 SIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFL 546

Query: 576 -QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
            +H E+LAV FGLI T+  T IRI+ NLR+C DCH+ +K+ S V  REIV+RD  RFH F
Sbjct: 547 YRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCF 606

Query: 635 QGGQCSCRDYW 645
           + G CSC DYW
Sbjct: 607 KNGSCSCGDYW 617


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/569 (35%), Positives = 312/569 (54%), Gaps = 72/569 (12%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMG---MYREGLGLLSKMGAEG-VSPDEVTMVSLISART 204
           +F ++P  +   WNT++          +  E L L S M  +G V P+  T  S++ A  
Sbjct: 74  VFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACA 133

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID------- 257
           +   L  GK +H  + +        +++ LV MY  C  + +A  L  +  +D       
Sbjct: 134 RASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQM 193

Query: 258 EVD-------VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG--------- 301
           E+D       VVLW  ++ G V+  +   A+ LFDEM +R+++SW +MISG         
Sbjct: 194 ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIE 253

Query: 302 -------MLNQDAEFKY-------KSCASIGALYHGIWVHVYIKKNQISIDN-------- 339
                  M + + +  Y        + A IGAL  G W+H+Y  KN+I ID+        
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVD 313

Query: 340 -------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  I+ A  +F  + ++N   W+++I A+AM G A+ AI  F  M + G  P+ V 
Sbjct: 314 MYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           +I +LSACSH GLV+EG  F S   +V  ++P+++HYGCMVDLLGRAGHLEE+   I +M
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           PI PD  IW +LL AC+ H+N+K+ E   + L E  P + G++V L+N+YA  G  + ++
Sbjct: 434 PIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVA 493

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE 572
           R+R+K++ M ++K  G S IE  G +H+F   D  +  ++EI  ML E+ M L+  G + 
Sbjct: 494 RVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRP 553

Query: 573 TSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
            +L+                H E++AVAFGLIST+ +  ++IV NLRIC DCH+ +K+ S
Sbjct: 554 NTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLIS 613

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +Y R+I++RD  RFH+F+ G CSC DYW
Sbjct: 614 LIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 34/265 (12%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G +K    LFD++P R V+SWN MIS Y   G + E + L  +M +  + P+ VT+VS
Sbjct: 216 RLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVS 275

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  ++  LE+GK +HL+  ++ ++I   L + LVDMY KCG I EA ++     + +
Sbjct: 276 VLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVF--ETLPK 333

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            + + W+ ++  +      ++A   F  M +  +    +   G+L+        +C+  G
Sbjct: 334 RNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS--------ACSHAG 385

Query: 319 ALYHG--IWVH-VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            +  G   + H V +   Q  I++     DL                     AGH ++A 
Sbjct: 386 LVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGR------------------AGHLEEAE 427

Query: 376 DLFLEMEETGTKPDQVTFIALLSAC 400
           +L   M     +PD V + ALL AC
Sbjct: 428 ELIRNMP---IEPDDVIWKALLGAC 449



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG + E  Q+F+ LP R+ I+W+ +I  +   G   + +     MG  GV+P++V 
Sbjct: 314 MYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            + ++SA +    +E G++    + +  + +   + +Y  +VD+  + G + EA++L+  
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVK-VVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRN 432

Query: 254 YEIDEVDVVLWTTLVSG 270
             I E D V+W  L+  
Sbjct: 433 MPI-EPDDVIWKALLGA 448


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/550 (37%), Positives = 314/550 (57%), Gaps = 50/550 (9%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-------- 187
            + +KCG+LK+   LFD++P R+V+SW +MI+ Y         L L      E        
Sbjct: 1186 MYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGN 1245

Query: 188  GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
             V  D V MVS++SA +++    + + +H F+ +     S  + N L+D Y KCG+   +
Sbjct: 1246 NVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 1305

Query: 248  QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW-TLMISGMLNQD 306
            +K+    E  E D + W ++++ Y +S    EA  +F  MV    + +  + +S +L   
Sbjct: 1306 KKVFDWME--EKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVL--- 1360

Query: 307  AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                  +CA  GAL  G  +H  + K  +  +                +E+A   F  + 
Sbjct: 1361 -----LACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 1415

Query: 352  EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
            EKNV  WT+++A Y M G A++A+D+F +M   G KP+ +TF+++L+ACSH GLV+EG+ 
Sbjct: 1416 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 1475

Query: 412  FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            + +     Y+I+P ++HYGCMVDL GRAG L E+ N I  M + PD  +W SLL ACR H
Sbjct: 1476 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIH 1535

Query: 472  QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
            +NV L E A + L E DP N G +VLL+N+YA AGR  D+ R+RM +++  L K  G+SL
Sbjct: 1536 KNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSL 1595

Query: 532  IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ 576
            +E  G VH F  GD  +PH E IY  L ++ + LQ+ G                +E  L+
Sbjct: 1596 VELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILR 1655

Query: 577  -HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
             H E+LAVAFG+++++  TTI I+ NLR+CGDCH+ +K+ S++ +R+ V+RD+ RFH F+
Sbjct: 1656 VHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFK 1715

Query: 636  GGQCSCRDYW 645
             G CSC DYW
Sbjct: 1716 DGVCSCGDYW 1725



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 179/356 (50%), Gaps = 42/356 (11%)

Query: 130 LVTRTV--LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           L+TR +  L +  G++     LF ++ N    +WN +I   T  G+  + L L   M  +
Sbjct: 60  LLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQ 119

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G++ D+ T   +I A T    +++GK +H  L +        + N L+D YFKCG    A
Sbjct: 120 GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFA 179

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML-NQD 306
            K+  +  +   +VV WTT++SG +   +  EARR+FDE+  +N++SWT MI+G + NQ 
Sbjct: 180 LKVFEKMRVR--NVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 307 AE-----FK-----------------YKSCASIGALYHGIWVHVYIKKNQISID------ 338
            E     FK                  K+C  +G L  G  +H Y  KN I I       
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297

Query: 339 ---------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                    +I+ A ++F  +  K++  W S+I +  + G  Q+A++LF EME    KPD
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
            +TFI +L AC H   V EG  + ++ ++ Y I P  +HY CM +L  R+ +L+E+
Sbjct: 358 AITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 119/261 (45%), Gaps = 28/261 (10%)

Query: 46  MVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP 102
            V ++C+   SID  + +H  LI      D  +   + +F    G   +A ++  +    
Sbjct: 130 FVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR 189

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWN 162
            +  W ++I                         L  CG L+E  ++FD++P+++V+SW 
Sbjct: 190 NVVSWTTVISG-----------------------LISCGDLQEARRIFDEIPSKNVVSWT 226

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
            MI+ Y       E L L  +M AE + P+E TMVSLI A T++  L +G+ +H +  ++
Sbjct: 227 AMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            ++I   L   L+DMY KCG I +A ++     +    +  W ++++         EA  
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVF--ETMPRKSLPTWNSMITSLGVHGLGQEALN 344

Query: 283 LFDEMVERNLISWTLMISGML 303
           LF EM   N+    +   G+L
Sbjct: 345 LFSEMERVNVKPDAITFIGVL 365



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 188/430 (43%), Gaps = 83/430 (19%)

Query: 157  DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
            +V SWN++I+     G   E L   S +   G+ P   +    I + + L DL  G+  H
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165

Query: 217  ----LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
                +F  E+ + +S +L    +DMY KCG++ +A+ L    EI   +VV WT++++GYV
Sbjct: 1166 QQAFVFGFETDLFVSSAL----IDMYSKCGQLKDARALFD--EIPLRNVVSWTSMITGYV 1219

Query: 273  KSNERDEARRLFDEMVERNL---------ISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
            ++ + D A  LF + +E            +   +M+S +          +C+ +      
Sbjct: 1220 QNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVL---------SACSRVSGKGIT 1270

Query: 324  IWVHVYIKK----NQISIDNIEL-AY----------DLFSEISEKNVYLWTSVIAAYAMA 368
              VH ++ K      I + N  + AY           +F  + EK+   W S+IA YA +
Sbjct: 1271 EGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQS 1330

Query: 369  GHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNI-- 422
            G + +A+++F  M    G + + VT  A+L AC+H G +  G   +D + K    YN+  
Sbjct: 1331 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 1390

Query: 423  -------------------------KPKMQHYGCMVDLLGRAGHLEESANFITSM---PI 454
                                     +  ++ +  MV   G  G  +E+ +    M    +
Sbjct: 1391 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 1450

Query: 455  PPDVSIWSSLLRACRCHQNVKLAEH---AFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
             P+   + S+L AC     V+   H   A KH  + +P  +  +  + +++ +AG L++ 
Sbjct: 1451 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIE-HYGCMVDLFGRAGCLNEA 1509

Query: 512  SRI--RMKLR 519
              +  RMK++
Sbjct: 1510 YNLIKRMKMK 1519



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 342  LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            LA   +  + + NV+ W SVIA  A  G + +A+  F  + + G  P + +F   + +CS
Sbjct: 1094 LATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCS 1153

Query: 402  HGGLVDEGYDFLS-KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
               L D     +S +++ V+  +  +     ++D+  + G L+++      +P+   VS 
Sbjct: 1154 --ALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVS- 1210

Query: 461  WSSLLRACRCHQNVKLAEHAFK-HLTETDPLNDGAHVLLANI 501
            W+S++     ++    A   FK  L E   + DG +V L ++
Sbjct: 1211 WTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 1252


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/586 (36%), Positives = 317/586 (54%), Gaps = 61/586 (10%)

Query: 102 PEIKIWNSIIENQLIN------GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
           P +K    +++ + I+      G+  +VF       +   + ++ G + +  +LFD +P 
Sbjct: 2   PVVKACGDLLDGKKIHCLVLKLGFEWDVFVA----ASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RD  SWN MIS Y   G   E L +  +M  EGV  D +T+ S++    ++ D+  GK +
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           HL++ +  ++    + N L++MY K G +G AQK+ G   +   DVV W TL++GY ++ 
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFG---LLIKDVVSWNTLITGYAQNG 174

Query: 276 ERDEARRLFDEMVERNLI-----SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
              EA  ++  M E   I     +W  ++               + +GAL  G+ +H  +
Sbjct: 175 LASEAIEVYLLMEEHEEIIPNQGTWVSILPAY------------SHVGALQQGMRIHGQV 222

Query: 331 KKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            KN +  D                ++ A  LF ++  KN   W ++I+ Y + G  +KA+
Sbjct: 223 IKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKAL 282

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           +LF EM+    KPD +TF++LLSACSH GLV +     +     Y IKP ++HYGCMVDL
Sbjct: 283 ELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDL 342

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
            GRAG LE + NFI  MPI PD S W +LL ACR H N++L +HA + L E D  N G +
Sbjct: 343 FGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYY 402

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           VLL+NIYA  G+ + +  +R   RD GL+K  G+S I     V  F +G+  +P  EEIY
Sbjct: 403 VLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIY 462

Query: 556 LMLNEIEMTLQQQG--------LQETS--------LQHRERLAVAFGLISTSEKTTIRIV 599
             L ++   ++  G        LQ+          + H ERLA+A+G+ISTS KT IRI 
Sbjct: 463 RELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIF 522

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+CGDCH+  K  S +  REI++RD+ RFH F+GG CSC DYW
Sbjct: 523 KNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/566 (37%), Positives = 319/566 (56%), Gaps = 53/566 (9%)

Query: 123  VFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
            VF     L   + L++   KCG+LK+   LFD++P R+V+SW +MI+ Y         L 
Sbjct: 2043 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 2102

Query: 180  LLSKMGAE--------GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
            L      E         V  D V MVS++SA +++    + + +H F+ +     S  + 
Sbjct: 2103 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG 2162

Query: 232  NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
            N L+D Y KCG+   ++K+    E  E D + W ++++ Y +S    EA  +F  MV   
Sbjct: 2163 NTLMDAYAKCGQPLVSKKVFDWME--EKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHV 2220

Query: 292  LISW-TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------------ 338
             + +  + +S +L         +CA  GAL  G  +H  + K  +  +            
Sbjct: 2221 GVRYNAVTLSAVL--------LACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYC 2272

Query: 339  ---NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
                +E+A   F  + EKNV  WT+++A Y M G A++A+D+F +M   G KP+ +TF++
Sbjct: 2273 KCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVS 2332

Query: 396  LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
            +L+ACSH GLV+EG+ + +     Y+I+P ++HYGCMVDL GRAG L E+ N I  M + 
Sbjct: 2333 VLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMK 2392

Query: 456  PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
            PD  +W SLL ACR H+NV L E A + L E DP N G +VLL+N+YA AGR  D+ R+R
Sbjct: 2393 PDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMR 2452

Query: 516  MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----- 570
            M +++  L K  G+SL+E  G VH F  GD  +PH E IY  L ++ + LQ+ G      
Sbjct: 2453 MLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMT 2512

Query: 571  ----------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVY 619
                      +E  L+ H E+LAVAFG+++++  TTI I+ NLR+CGDCH+ +K+ S++ 
Sbjct: 2513 SVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLV 2572

Query: 620  NREIVIRDNGRFHRFQGGQCSCRDYW 645
            +R+ V+RD+ RFH F+ G CSC DYW
Sbjct: 2573 HRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 179/356 (50%), Gaps = 42/356 (11%)

Query: 130 LVTRTV--LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           L+TR +  L +  G++     LF ++ N    +WN +I   T  G+  + L L   M  +
Sbjct: 60  LLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQ 119

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G++ D+ T   +I A T    +++GK +H  L +        + N L+D YFKCG    A
Sbjct: 120 GIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFA 179

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML-NQD 306
            K+  +  +   +VV WTT++SG +   +  EARR+FDE+  +N++SWT MI+G + NQ 
Sbjct: 180 LKVFEKMRVR--NVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 307 AE-----FK-----------------YKSCASIGALYHGIWVHVYIKKNQISID------ 338
            E     FK                  K+C  +G L  G  +H Y  KN I I       
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297

Query: 339 ---------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                    +I+ A ++F  +  K++  W S+I +  + G  Q+A++LF EME    KPD
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
            +TFI +L AC H   V EG  + ++ ++ Y I P  +HY CM +L  R+ +L+E+
Sbjct: 358 AITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 10/217 (4%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL--------LNKCGKLKEV 146
           +I+ G   ++ + N++I+     G+ +    ++  +  R V+        L  CG L+E 
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
            ++FD++P+++V+SW  MI+ Y       E L L  +M AE + P+E TMVSLI A T++
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
             L +G+ +H +  ++ ++I   L   L+DMY KCG I +A ++     +    +  W +
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFE--TMPRKSLPTWNS 328

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           +++         EA  LF EM   N+    +   G+L
Sbjct: 329 MITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVL 365



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/429 (23%), Positives = 185/429 (43%), Gaps = 81/429 (18%)

Query: 157  DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
            +V SWN++I+     G   E L   S +   G+ P   +    I + + L DL  G+  H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 217  ----LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
                +F  E+ + +S +L    +DMY KCG++ +A+ L    EI   +VV WT++++GYV
Sbjct: 2039 QQAFVFGFETDLFVSSAL----IDMYSKCGQLKDARALFD--EIPLRNVVSWTSMITGYV 2092

Query: 273  KSNERDEARRLFDEMVERNL---------ISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
            ++ + D A  LF + +E            +   +M+S +          +C+ +      
Sbjct: 2093 QNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVL---------SACSRVSGKGIT 2143

Query: 324  IWVHVYIKKN----QISIDNIEL-AY----------DLFSEISEKNVYLWTSVIAAYAMA 368
              VH ++ K      I + N  + AY           +F  + EK+   W S+IA YA +
Sbjct: 2144 EGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQS 2203

Query: 369  GHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNI-- 422
            G + +A+++F  M    G + + VT  A+L AC+H G +  G   +D + K    YN+  
Sbjct: 2204 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 2263

Query: 423  -------------------------KPKMQHYGCMVDLLGRAGHLEESANFITSM---PI 454
                                     +  ++ +  MV   G  G  +E+ +    M    +
Sbjct: 2264 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 2323

Query: 455  PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA--HVLLANIYAKAGRLDDMS 512
             P+   + S+L AC     V+   H F  +     +  G   +  + +++ +AG L++  
Sbjct: 2324 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAY 2383

Query: 513  RI--RMKLR 519
             +  RMK++
Sbjct: 2384 NLIKRMKMK 2392



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 5/166 (3%)

Query: 338  DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
            D+  LA   +  + + NV+ W SVIA  A  G + +A+  F  + + G  P + +F   +
Sbjct: 1963 DHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTI 2022

Query: 398  SACSHGGLVDEGYDFLS-KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
             +CS   L D     +S +++ V+  +  +     ++D+  + G L+++      +P+  
Sbjct: 2023 KSCS--ALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 2080

Query: 457  DVSIWSSLLRACRCHQNVKLAEHAFKH-LTETDPLNDGAHVLLANI 501
             VS W+S++     ++    A   FK  L E   + DG +V L ++
Sbjct: 2081 VVS-WTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 2125


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/643 (31%), Positives = 329/643 (51%), Gaps = 79/643 (12%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++HS ++   L     ++  V       GD   A  +  +     +  WN+++       
Sbjct: 79  KVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVS------ 132

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                            L    G++     LF+ +P+R ++SWN MI+ Y   G+  + L
Sbjct: 133 -----------------LNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKAL 175

Query: 179 GLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
            L S+M  E  ++PDE T+ S++SA   L ++ +GK +H ++  + M  +  + N L+  
Sbjct: 176 KLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIST 235

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297
           Y K G +  A++++ +    +++V+ +T L+ GYVK  + + AR +F  M  R++++WT 
Sbjct: 236 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTA 295

Query: 298 MISGM----LNQDAEFKYKS-------------------CASIGALYHGIWVHVYIKKNQ 334
           MI G      N +A   ++S                   CAS+  L +G  +H    ++ 
Sbjct: 296 MIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL 355

Query: 335 I----SIDN-----------IELAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           +    S+ N              A  +F ++   K    WTS+I A A  G  ++A+ LF
Sbjct: 356 LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 415

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
            EM   G +PD++T++ +LSACSH G V+EG  +  +    + I P+M HY CMVDLL R
Sbjct: 416 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 475

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
           AG   E+  FI  MP+ PD   W SLL ACR H+N +LAE A + L   DP N GA+  +
Sbjct: 476 AGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAI 535

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
           AN+Y+  GR  D +RI    ++  ++K+ G+S       +H F + D+ +P  + +Y M 
Sbjct: 536 ANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMA 595

Query: 559 NEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNL 602
             +   ++  G                 +E   +H E+LA+AFGLIST EKTT+R++ NL
Sbjct: 596 ARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNL 655

Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R+C DCH+ +K  S+V +REI++RD  RFH F+ G CSC+DYW
Sbjct: 656 RVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 173/429 (40%), Gaps = 79/429 (18%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  K G+L +   +F ++P RD +SW  M+      G + E +  L  M A+G +P + T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + +++S+    +   +G+ +H F+ +  +     + N +++MY KCG    A  +  R  
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-------------- 301
           +  V    W  +VS        D A  LF+ M +R+++SW  MI+G              
Sbjct: 121 VRSVSS--WNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178

Query: 302 --MLNQDA----EFKYKS----CASIGALYHGIWVHVYIKKNQ----------------- 334
             ML++ +    EF   S    CA++G +  G  VH YI + +                 
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 238

Query: 335 -------------------------------ISIDNIELAYDLFSEISEKNVYLWTSVIA 363
                                          + I ++E A ++F  ++ ++V  WT++I 
Sbjct: 239 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 298

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y   G   +AIDLF  M   G +P+  T  A+LS C+    +D G     +  R   ++
Sbjct: 299 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LE 357

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH----QNVKLAEH 479
                   ++ +  R+G    +      +    +   W+S++ A   H    + V L E 
Sbjct: 358 QSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 417

Query: 480 AFKHLTETD 488
             +   E D
Sbjct: 418 MLRAGVEPD 426


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/643 (31%), Positives = 329/643 (51%), Gaps = 79/643 (12%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++HS ++   L     ++  V       GD   A  +  +     +  WN+++       
Sbjct: 185 KVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVS------ 238

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                            L    G++     LF+ +P+R ++SWN MI+ Y   G+  + L
Sbjct: 239 -----------------LNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKAL 281

Query: 179 GLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
            L S+M  E  ++PDE T+ S++SA   L ++ +GK +H ++  + M  +  + N L+  
Sbjct: 282 KLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIST 341

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297
           Y K G +  A++++ +    +++V+ +T L+ GYVK  + + AR +F  M  R++++WT 
Sbjct: 342 YAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTA 401

Query: 298 MISGM----LNQDAEFKYKS-------------------CASIGALYHGIWVHVYIKKNQ 334
           MI G      N +A   ++S                   CAS+  L +G  +H    ++ 
Sbjct: 402 MIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL 461

Query: 335 I----SIDN-----------IELAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           +    S+ N              A  +F ++   K    WTS+I A A  G  ++A+ LF
Sbjct: 462 LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 521

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
            EM   G +PD++T++ +LSACSH G V+EG  +  +    + I P+M HY CMVDLL R
Sbjct: 522 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 581

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
           AG   E+  FI  MP+ PD   W SLL ACR H+N +LAE A + L   DP N GA+  +
Sbjct: 582 AGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAI 641

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
           AN+Y+  GR  D +RI    ++  ++K+ G+S       +H F + D+ +P  + +Y M 
Sbjct: 642 ANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMA 701

Query: 559 NEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNL 602
             +   ++  G                 +E   +H E+LA+AFGLIST EKTT+R++ NL
Sbjct: 702 ARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNL 761

Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R+C DCH+ +K  S+V +REI++RD  RFH F+ G CSC+DYW
Sbjct: 762 RVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 173/429 (40%), Gaps = 79/429 (18%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  K G+L +   +F ++P RD +SW  M+      G + E +  L  M A+G +P + T
Sbjct: 107 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 166

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + +++S+    +   +G+ +H F+ +  +     + N +++MY KCG    A  +  R  
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 226

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-------------- 301
           +  V    W  +VS        D A  LF+ M +R+++SW  MI+G              
Sbjct: 227 VRSVSS--WNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 284

Query: 302 --MLNQDA----EFKYKS----CASIGALYHGIWVHVYIKKNQ----------------- 334
             ML++ +    EF   S    CA++G +  G  VH YI + +                 
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 344

Query: 335 -------------------------------ISIDNIELAYDLFSEISEKNVYLWTSVIA 363
                                          + I ++E A ++F  ++ ++V  WT++I 
Sbjct: 345 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 404

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y   G   +AIDLF  M   G +P+  T  A+LS C+    +D G     +  R   ++
Sbjct: 405 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LE 463

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH----QNVKLAEH 479
                   ++ +  R+G    +      +    +   W+S++ A   H    + V L E 
Sbjct: 464 QSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 523

Query: 480 AFKHLTETD 488
             +   E D
Sbjct: 524 MLRAGVEPD 532



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 133/334 (39%), Gaps = 86/334 (25%)

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFK----CGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           G+ +H    ++ +  S  L N L+  Y +     G + +A++L     +   +V  W +L
Sbjct: 45  GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSL 104

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK----------------- 310
           +S + KS    +AR +F EM ER+ +SWT+M+ G LN+   F                  
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG-LNRAGRFGEAIKTLLDMTADGFTPT 163

Query: 311 -------YKSCASIGALYHGIWVHVYIKKNQI--------SIDNI-------ELAYDLFS 348
                    SCA   A   G  VH ++ K  +        S+ N+       E A  +F 
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 223

Query: 349 EISEKNVYLW-------------------------------TSVIAAYAMAGHAQKAIDL 377
            +  ++V  W                                ++IA Y   G   KA+ L
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 378 FLEM-EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM----QHYGCM 432
           F  M  E+   PD+ T  ++LSAC++ G V  G     K+   Y ++ +M    Q    +
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIG-----KQVHAYILRTEMAYNSQVTNAL 338

Query: 433 VDLLGRAGHLEESANFI-TSMPIPPDVSIWSSLL 465
           +    ++G +E +   +  SM    +V  +++LL
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/684 (30%), Positives = 338/684 (49%), Gaps = 82/684 (11%)

Query: 21  RLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQIST 77
           R G   K  +        P    +  V  SC+         ++HS ++   L     ++ 
Sbjct: 144 RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 203

Query: 78  QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLL 137
            V       GD   A  +  +     +  WN+++                        L 
Sbjct: 204 SVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVS-----------------------LN 240

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTM 196
              G++     LF+ +P R ++SWN MI+ Y   G+  + L L S+M  E  ++PDE T+
Sbjct: 241 THLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTI 300

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            S++SA   L ++ +GK +H ++  + M  +  + N L+  Y K G +  A++++ +   
Sbjct: 301 TSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSME 360

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDAEFKYK 312
            +++V+ +T L+ GYVK  + + AR +F  M  R++++WT MI G      N +A   ++
Sbjct: 361 TDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFR 420

Query: 313 S-------------------CASIGALYHGIWVHVYIKKNQI----SIDN---------- 339
           S                   CAS+  L +G  +H    ++ +    S+ N          
Sbjct: 421 SMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSG 480

Query: 340 -IELAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
               A  +F ++   K    WTS+I A A  G  ++A+ LF EM   G +PD++T++ +L
Sbjct: 481 SFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVL 540

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           SACSH G V+EG  +  +    + I P+M HY CMVDLL RAG   E+  FI  MP+ PD
Sbjct: 541 SACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPD 600

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
              W SLL ACR H+N +LAE A + L   DP N GA+  +AN+Y+  GR  D +RI   
Sbjct: 601 AIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 660

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
            ++  ++K+ G+S       +H F + D+ +P  + +Y M   +   ++  G        
Sbjct: 661 RKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSV 720

Query: 571 ---------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                    +E   +H E+LA+AFGLIST EKTT+R++ NLR+C DCH+ +K  S+V +R
Sbjct: 721 LHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDR 780

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           EI++RD  RFH F+ G CSC+DYW
Sbjct: 781 EIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 174/437 (39%), Gaps = 95/437 (21%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  K G+L +   +F ++P RD +SW  M+      G + E +  L  M A+G +P + T
Sbjct: 107 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 166

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + +++S+    +   +G+ +H F+ +  +     + N +++MY KCG    A  +  R  
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMP 226

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-------------- 301
           +  V    W  +VS        D A  LF+ M  R+++SW  MI+G              
Sbjct: 227 VRSVSS--WNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLF 284

Query: 302 --MLNQDA----EFKYKS----CASIGALYHGIWVHVYIKKNQIS--------------- 336
             ML++ +    EF   S    CA++G +  G  VH YI + +++               
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 344

Query: 337 ---------------------------------IDNIELAYDLFSEISEKNVYLWTSVIA 363
                                            I ++E A ++F  ++ ++V  WT++I 
Sbjct: 345 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 404

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--------YDFLSK 415
            Y   G   +AIDLF  M   G +P+  T  A+LS C+    +D G           L +
Sbjct: 405 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLER 464

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH---- 471
            S V N          ++ +  R+G    +      +    +   W+S++ A   H    
Sbjct: 465 SSSVSN---------AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515

Query: 472 QNVKLAEHAFKHLTETD 488
           + V L E   +   E D
Sbjct: 516 EAVGLFEEMLRAGVEPD 532



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 131/334 (39%), Gaps = 86/334 (25%)

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFK----CGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           G+ +H    ++ +  S  L N L+  Y +     G + +A++L     +   +V  W +L
Sbjct: 45  GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSL 104

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK----------------- 310
           +S + KS    +AR +F EM ER+ +SWT+M+ G LN+   F                  
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG-LNRAGRFGEAIKTLLDMTADGFTPT 163

Query: 311 -------YKSCASIGALYHGIWVHVYIKK----------NQI-----SIDNIELAYDLFS 348
                    SCA   A   G  VH ++ K          N +        + E A  +F 
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFE 223

Query: 349 EISEKNVYLW-------------------------------TSVIAAYAMAGHAQKAIDL 377
            +  ++V  W                                ++IA Y   G   KA+ L
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 378 FLEM-EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM----QHYGCM 432
           F  M  E+   PD+ T  ++LSAC++ G V  G     K+   Y ++ +M    Q    +
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIG-----KQVHAYILRTEMAYNSQVTNAL 338

Query: 433 VDLLGRAGHLEESANFI-TSMPIPPDVSIWSSLL 465
           +    ++G +E +   +  SM    +V  +++LL
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 204/551 (37%), Positives = 329/551 (59%), Gaps = 51/551 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT-------SMGMYREGLGLLSKMGAE- 187
           + +KCGKL     LFD++P R++++W ++I+ Y        ++ +++E L   S+   E 
Sbjct: 126 MYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEE 185

Query: 188 -GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G S D V M+S++SA +++ +  + + +H    +  +     + N L+D Y KCG++  
Sbjct: 186 VGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSL 245

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT-LMISGMLNQ 305
           ++K+    ++ E DVV W ++++ Y ++    +A  +F  M++     +  + +S +L  
Sbjct: 246 SRKVFD--DMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLL-- 301

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKK-----NQISIDNI----------ELAYDLFSEI 350
                  +CA  GAL  G+ +H  + K     N I   +I          E+A + F  +
Sbjct: 302 ------LACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGM 355

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            EKNV  WT++IA Y M G A++A+D+F +M   G KP+ +TFI++L+ACSH G ++EG+
Sbjct: 356 KEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGW 415

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
            + +  S  YN++P ++HYGCMVDLLGRAG+++E+ N I SM +  D  +W SLL ACR 
Sbjct: 416 RWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRI 475

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           H++V+LAE + + L + DP N G +VLLANIYA AGR  D+ R+R+ ++D GL K  GYS
Sbjct: 476 HKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYS 535

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQ------ 576
           L+E  G VH F  GD  +P  E+IY  L E+ + LQ+ G        L +   +      
Sbjct: 536 LVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIV 595

Query: 577 --HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
             H E+LAVAFG++++   +TI ++ NLR+CGDCH+ +K+ S++ +REI++RD  RFH F
Sbjct: 596 RVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHF 655

Query: 635 QGGQCSCRDYW 645
           + G CSC DYW
Sbjct: 656 KDGLCSCGDYW 666



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 163/393 (41%), Gaps = 100/393 (25%)

Query: 149 LFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           LF+K  +R DV SWN++I+     G   E L   S M    + P+  T    I + + L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 208 DLEMGKNLH----LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
           DL  GK  H    +F  ES + +S +L    +DMY KCGK+                   
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSAL----IDMYSKCGKL------------------- 133

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML-NQDA--------EFKYK-- 312
                           AR LFDE+  RN+++WT +I+G + N DA        EF ++  
Sbjct: 134 --------------SNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKS 179

Query: 313 ------------SCASIGAL--------------YHGIWVHVYIKKNQISIDN------- 339
                       S A I  L               HG+ + V + K  + ++N       
Sbjct: 180 EGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDK-VMGVENTLLDAYA 238

Query: 340 ----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFI 394
               + L+  +F +++EK+V  W S+IA YA  G +  A ++F  M +  G K ++VT  
Sbjct: 239 KCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLS 298

Query: 395 ALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
            LL AC+H G +  G   +D + K   V N+         ++D+  + G  E + N    
Sbjct: 299 TLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATS----IIDMYCKCGQAEMARNAFDG 354

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           M    +V  W++++     H   + A   F  +
Sbjct: 355 MK-EKNVRSWTAMIAGYGMHGFAREALDVFYQM 386


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/543 (37%), Positives = 295/543 (54%), Gaps = 59/543 (10%)

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK-LRDLEMGKNLHL 217
           + WN +IS +     + E       M   G +P  VT VS++SA  K   D+ +G  +H 
Sbjct: 110 VVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHG 169

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
            +  S +     + N LVDMY +C  +  A KL    ++  V  V WT+L+SG  +    
Sbjct: 170 RVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSV--VSWTSLLSGLTRLGRV 227

Query: 278 DEARRLFDEMVERNLISWTLMISGMLNQDAEFK------------------------YKS 313
           DEAR LF  M ER+ +SWT MI G + Q A F+                          +
Sbjct: 228 DEARDLFGRMPERDTVSWTAMIDGYV-QAARFREALEMFREMQCSNVSADEFTMVSVITA 286

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           CA +GAL  G WV VY+ +  I +D               +IE A D+F ++  ++ + W
Sbjct: 287 CAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTW 346

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T++I   A+ G+ ++AI++F  M      PD+VTFI +L+AC+H GLVD+G +F      
Sbjct: 347 TAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRE 406

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            YNI P + HYGC++DL GRAG + E+ + I  MP+ P+ +IW +LL ACR H N ++ E
Sbjct: 407 TYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGE 466

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
              + L + DP N   + LL+NIYAK  R +D+ R+R  + + G+KK+ G SLIE  G +
Sbjct: 467 LVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGII 526

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLA 582
           H+F +GD  +P S+EIY  L  I   L   G                 Q+    H E+LA
Sbjct: 527 HEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLA 586

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           +AF L+S+   T IRIV NLR+C DCH+ +K+ S++Y RE+V+RD  RFH F+ G CSC+
Sbjct: 587 IAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCK 646

Query: 643 DYW 645
           DYW
Sbjct: 647 DYW 649



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 149/331 (45%), Gaps = 41/331 (12%)

Query: 86  TGDLGYAQQI----IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL----- 136
           TGD+    Q+    +  G  P++++ N++++        +  + ++  +  R+V+     
Sbjct: 158 TGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSL 217

Query: 137 ---LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
              L + G++ E   LF ++P RD +SW  MI  Y     +RE L +  +M    VS DE
Sbjct: 218 LSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADE 277

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            TMVS+I+A  +L  LEMG+ + +++    +K+   + N L+DMY KCG I  A  +   
Sbjct: 278 FTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVF-- 335

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            ++   D   WT ++ G   +   +EA  +F  M+  +     +   G+L         +
Sbjct: 336 KDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLT--------A 387

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           C   G           + K +    ++   Y++       NV  +  +I  +  AG   +
Sbjct: 388 CTHAG----------LVDKGREFFLSMRETYNI-----APNVVHYGCIIDLFGRAGKITE 432

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACS-HG 403
           A+D   +M  T   P+   +  LL+AC  HG
Sbjct: 433 ALDAIDQMPMT---PNSTIWGTLLAACRVHG 460



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 10/166 (6%)

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG-G 404
           L SE       +W ++I+ +       +A   F++M   G  P  VT++++LSAC  G G
Sbjct: 100 LLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTG 159

Query: 405 LVDEGYDFLSKKSRVY--NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            V  G   +    RV    + P ++    +VD+      +E +      M +   VS W+
Sbjct: 160 DVLLG---MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVS-WT 215

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           SLL        V  A   F  + E D ++  A +   + Y +A R 
Sbjct: 216 SLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMI---DGYVQAARF 258


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 210/670 (31%), Positives = 346/670 (51%), Gaps = 89/670 (13%)

Query: 54   IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
            + E +RIH  +          +   +      +G++  A ++  +  + ++  WNS+I  
Sbjct: 569  VGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISG 628

Query: 114  QLINGYPQEVFAIYLYLV---------------------------------------TRT 134
             ++NG+       ++ ++                                       +R 
Sbjct: 629  CVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSRE 688

Query: 135  VLLN--------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
            V+ N        KCG L +  Q F+K+  + V+SW ++I+ Y   G+Y + + L  +M +
Sbjct: 689  VMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES 748

Query: 187  EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            +GVSPD  +M S++ A      L+ G+++H ++ ++ M +   + N L+DMY KCG + E
Sbjct: 749  KGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEE 808

Query: 247  AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
            A  +  +  +   D+V W T++ GY K++  +EA +LF EM + +      M   +    
Sbjct: 809  AYLVFSQIPVK--DIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPDGITMACLL---- 862

Query: 307  AEFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEIS 351
                  +C S+ AL  G  +H  I +N  S         ID      ++  A  LF  I 
Sbjct: 863  -----PACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIP 917

Query: 352  EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
            EK++  WT +I+   M G   +AI  F +M   G KPD++TF ++L ACSH GL++EG+ 
Sbjct: 918  EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWG 977

Query: 412  FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            F +      N++PK++HY CMVDLL R G+L ++ N I +MPI PD +IW +LL  CR H
Sbjct: 978  FFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIH 1037

Query: 472  QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
             +V+LAE   +H+ E +P N G +VLLANIYA+A + +++ ++R ++   GLKK  G S 
Sbjct: 1038 HDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSW 1097

Query: 532  IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL- 575
            IE  G    F S D  +P ++ I+ +LN + + ++ +G                +E +L 
Sbjct: 1098 IEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALC 1157

Query: 576  QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
             H E+LA+AFG+++     TIR+  NLR+C DCH   K  S+   REI++RD+ RFH F+
Sbjct: 1158 GHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFK 1217

Query: 636  GGQCSCRDYW 645
             G CSCRD+W
Sbjct: 1218 DGFCSCRDFW 1227



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 210/480 (43%), Gaps = 62/480 (12%)

Query: 73  PQISTQVFEF-----------LVFTGDLGYAQQIIR--QGDEPEIKIWNSII-------- 111
           P+ ST+V  F               GDL  A +++R  Q  E ++  ++SI+        
Sbjct: 407 PRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKC 466

Query: 112 --ENQLI------NGYPQE----VFAIYLYLVTRTVLLNKCGKLKEVCQLFDK-LPNRDV 158
             E +++      NG P E       +++Y+         CG L+E  ++FD  L +  V
Sbjct: 467 LQEGKMVHSVISSNGIPIEGVLGAKLVFMYV--------SCGALREGRRIFDHILSDNKV 518

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
             WN M+S Y  +G YRE + L  KM   G++ +  T   ++     L  +   K +H  
Sbjct: 519 FLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGC 578

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           + +       +++N L+  YFK G++  A KL    E+ + DVV W +++SG V +    
Sbjct: 579 VYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFD--ELGDRDVVSWNSMISGCVMNGFSH 636

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----NQ 334
            A   F +M+   ++   + ++ ++N  A        S+G   HG  V     +    N 
Sbjct: 637 SALEFFVQML---ILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNN 693

Query: 335 ISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
             +D      N+  A   F ++ +K V  WTS+IAAY   G    AI LF EME  G  P
Sbjct: 694 TLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSP 753

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D  +  ++L AC+ G  +D+G D +    R  N+   +     ++D+  + G +EE+   
Sbjct: 754 DVYSMTSVLHACACGNSLDKGRD-VHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLV 812

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
            + +P+  D+  W++++     +    L   A K   E    +    + +A +    G L
Sbjct: 813 FSQIPV-KDIVSWNTMIGG---YSKNSLPNEALKLFAEMQKESRPDGITMACLLPACGSL 868


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 320/557 (57%), Gaps = 64/557 (11%)

Query: 131 VTRTVLLNKCGKLKEVCQ---LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           V  T+L++   K+  +C    L  + P RDVISW ++I+ Y+     RE +G    M + 
Sbjct: 174 VAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSH 233

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G++PDEVT+++++SA  KL+DLE+G++LHL +EE  M  S +L+  L+DMY KCG  G A
Sbjct: 234 GIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHA 293

Query: 248 QKL---LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
           Q++   LGR    +     W  ++ GY K    D AR LFDEM  R++I++  M++G ++
Sbjct: 294 QQVFDALGRGPRPQS----WNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIH 349

Query: 305 ----QDAEFKYKS-------------------CASIGALYHGIWVHVYIKKNQISID--- 338
               ++A   + S                   CAS+GAL  G  +H  I++  +  D   
Sbjct: 350 SGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYL 409

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        ++ A  +F  + +++V+ WT++IA  A  G  + A++ F +M   G 
Sbjct: 410 GTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGF 469

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           +P+ V++IA+L+ACSH  L++EG  +  +   +YNI P+++HYGCM+DLLGR+G L+E+ 
Sbjct: 470 QPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAM 529

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
           + + +MPI P+  IW+S+L ACR H+++ LA+ A +HL + +P  DG +V L NIY  + 
Sbjct: 530 DLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSR 589

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
           + ++ S+IRM + +  +KK  GYS I   G VHKF   D  +P   EI  ML EI   L+
Sbjct: 590 QWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLK 649

Query: 567 QQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
             G                 ++  L H E+LA+AFGLI+ +    + I  NLR+C DCHS
Sbjct: 650 SLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHS 709

Query: 611 FMKVTSQVYNREIVIRD 627
            +K+ S+++NREI++RD
Sbjct: 710 AIKLISRLWNREIIVRD 726



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 127/310 (40%), Gaps = 49/310 (15%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT---MVSL 199
           L+    LFD++P    +    + +C  +         L  +M   GV PD  T   +   
Sbjct: 53  LRYALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKC 112

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            S+ ++   L +   LH     + +  +   + N L+ MY + G   +A++     EI  
Sbjct: 113 SSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFD--EIHV 170

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM--LNQDAE----FK-- 310
            D V WT L+SG  K     + + L  +   R++ISWT +I+     N+  E    FK  
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM 230

Query: 311 ---------------YKSCASIGALYHGIWVHVYI-KKNQISIDNIELAY-DLFSEISE- 352
                            +CA +  L  G  +H+ + +K   + +N+ +A  D++++  + 
Sbjct: 231 LSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDF 290

Query: 353 ---KNVY----------LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
              + V+           W ++I  Y   GH   A  LF EME      D +TF ++++ 
Sbjct: 291 GHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVR----DIITFNSMMTG 346

Query: 400 CSHGGLVDEG 409
             H G + E 
Sbjct: 347 YIHSGQLREA 356


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 213/668 (31%), Positives = 349/668 (52%), Gaps = 89/668 (13%)

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
             ++IH+ L+ + L  +  + T++       G + YA+++  +   P++ +WN+II +  
Sbjct: 71  HLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYS 130

Query: 116 INGYPQEVFAIYLYLVTRTV---------------------------------------- 135
            N   ++   +Y ++    V                                        
Sbjct: 131 RNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVF 190

Query: 136 -------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
                  L  KCG +     +FD L +R ++SW ++IS Y   G   E L + S+M   G
Sbjct: 191 VQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNG 250

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           V PD + +VS++ A T + DLE G+++H F+ +  ++   +LL  L   Y KCG +  A+
Sbjct: 251 VKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAK 310

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
                 ++   +V++W  ++SGY K+   +EA  LF  M+ RN+   ++ +   +   A+
Sbjct: 311 SFFD--QMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQ 368

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
                   +G+L    W+  Y+ K+    D               ++E A  +F   S+K
Sbjct: 369 --------VGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDK 420

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           +V +W+++I  Y + G   +AI+L+  M++ G  P+ VTFI LL+AC+H GLV EG++ L
Sbjct: 421 DVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWE-L 479

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
               + + I P+ +HY C+VDLLGRAG+L E+  FI  +PI P VS+W +LL AC+ ++ 
Sbjct: 480 FHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRC 539

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
           V L E+A   L   DP N G +V L+N+YA +   D ++ +R+ +R+ GL K LGYS+IE
Sbjct: 540 VTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIE 599

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-H 577
             G +  F  GD  +P ++EI+  L  +E  L++ G                +E +L  H
Sbjct: 600 INGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFH 659

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            ER+AVA+GLIST+  TT+RI  NLR C +CHS +K+ S++  REI++RD  RFH F+ G
Sbjct: 660 SERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDG 719

Query: 638 QCSCRDYW 645
            CSC DYW
Sbjct: 720 LCSCGDYW 727



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 122/298 (40%), Gaps = 53/298 (17%)

Query: 25  VPKMRISRKFAN--VCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQV 79
           V  +R+  +  N  V P  + ++ + R+ + +D+ E+   IH  +I   L  +P +   +
Sbjct: 237 VEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISL 296

Query: 80  FEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV---- 135
             F    G +  A+    Q     + +WN++I     NG+ +E   ++ Y+++R +    
Sbjct: 297 TAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDS 356

Query: 136 -------------------------------------------LLNKCGKLKEVCQLFDK 152
                                                      +  KCG ++   ++FD+
Sbjct: 357 VTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDR 416

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
             ++DV+ W+ MI  Y   G   E + L   M   GV P++VT + L++A      ++ G
Sbjct: 417 NSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEG 476

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
             L   +++  +       + +VD+  + G +GEA   + +  I E  V +W  L+S 
Sbjct: 477 WELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPI-EPGVSVWGALLSA 533


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/569 (35%), Positives = 311/569 (54%), Gaps = 72/569 (12%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMG---MYREGLGLLSKMGAEG-VSPDEVTMVSLISART 204
           +F ++P  +   WNT++          +  E L L S M  +G V P+  T  S++ A  
Sbjct: 74  VFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACA 133

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID------- 257
           +   L  GK +H  + +        +++ LV MY  C  + +A  L  +  +D       
Sbjct: 134 RASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQM 193

Query: 258 EVD-------VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG--------- 301
           E+D       VVLW  ++ G V+  +   A+ LFDEM  R+++SW +MISG         
Sbjct: 194 ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIE 253

Query: 302 -------MLNQDAEFKY-------KSCASIGALYHGIWVHVYIKKNQISIDN-------- 339
                  M + + +  Y        + A IGAL  G W+H+Y  KN++ ID+        
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVD 313

Query: 340 -------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  I+ A  +F  + ++N   W+++I A+AM G A+ AI  F  M + G  P+ V 
Sbjct: 314 MYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           +I +LSACSH GLV+EG  F S   +V  ++P+++HYGCMVDLLGRAGHLEE+   I +M
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           PI PD  IW +LL AC+ H+N+K+ E   + L E  P + G++V L+N+YA  G  + ++
Sbjct: 434 PIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVA 493

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE 572
           R+R+K++ M ++K  G S IE  G +H+F   D  +  ++EI  ML E+ M L+  G + 
Sbjct: 494 RVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRP 553

Query: 573 TSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
            +L+                H E++AVAFGLIST+ +  ++IV NLRIC DCH+ +K+ S
Sbjct: 554 NTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLIS 613

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +Y R+I++RD  RFH+F+ G CSC DYW
Sbjct: 614 LIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 34/265 (12%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G +K    LFD++P R V+SWN MIS Y   G + E + L  +M +  + P+ VT+VS
Sbjct: 216 RLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVS 275

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  ++  LE+GK +HL+  ++ ++I   L + LVDMY KCG I +A ++     + +
Sbjct: 276 VLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVF--ETLPK 333

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            + + W+ ++  +      ++A   F  M +  +    +   G+L+        +C+  G
Sbjct: 334 RNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS--------ACSHAG 385

Query: 319 ALYHG--IWVH-VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            +  G   + H V +   Q  I++     DL                     AGH ++A 
Sbjct: 386 LVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGR------------------AGHLEEAE 427

Query: 376 DLFLEMEETGTKPDQVTFIALLSAC 400
           +L   M     +PD V + ALL AC
Sbjct: 428 ELIRNMP---IEPDDVIWKALLGAC 449



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 73/137 (53%), Gaps = 4/137 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG + +  Q+F+ LP R+ I+W+ +I  +   G   + +     MG  GV+P++V 
Sbjct: 314 MYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            + ++SA +    +E G++    + +  + +   + +Y  +VD+  + G + EA++L+  
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVK-VVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRN 432

Query: 254 YEIDEVDVVLWTTLVSG 270
             I E D V+W  L+  
Sbjct: 433 MPI-EPDDVIWKALLGA 448


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 211/580 (36%), Positives = 329/580 (56%), Gaps = 59/580 (10%)

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           I +   + GY  ++F     +     + +KCG L +  +LFD++P R+V+SW +MIS Y 
Sbjct: 108 IHQQAFVFGYGSDIFVASALID----MYSKCGYLNDARKLFDEIPERNVVSWTSMISGYV 163

Query: 170 SMGMYREGLGLLSK-----------MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
                RE + L  +           +   GV  D V +  +ISA  ++    + + +H  
Sbjct: 164 QNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGL 223

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
             +   +   ++ N L+D Y KCG+I  ++K+    E  E DV  W +L++ Y ++    
Sbjct: 224 AVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME--ETDVCSWNSLIAVYAQNGLSV 281

Query: 279 EARRLFDEMVERNLISW-TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337
           EA  LF +MV+R  + +  + +S +L         +CA  GAL  G  +H  + K ++  
Sbjct: 282 EAFSLFSDMVKRGEVRYNAVTLSAVL--------LACAHSGALQIGKCIHDQVVKMELE- 332

Query: 338 DN----------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
           DN                +E+A   F  +  KNV  WT ++A Y M GH ++A+ +F EM
Sbjct: 333 DNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEM 392

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
              G KP+ +TF+++L+ACSH GL+ EG+ + +K    ++++P ++HY CMVDLLGRAG+
Sbjct: 393 IRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGY 452

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           L+E+   I  M + PD  +W SLL ACR H+NV+L E + + L + DP N G +VLL+NI
Sbjct: 453 LKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNI 512

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           YA AGR DD+ R+R+ +++ GL K  GYS++E  G VH F  GD  +P  E+IY  L+E+
Sbjct: 513 YADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDEL 572

Query: 562 EMTLQQQG-------------LQETSL---QHRERLAVAFGLISTSEKTTIRIVNNLRIC 605
            + LQ+ G             ++E  +    H E+LAVAFG++++   + I+I+ NLRIC
Sbjct: 573 NVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRIC 632

Query: 606 GDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GDCH  +K+ S++ NREIVIRD+ RFH F+ G CSC DYW
Sbjct: 633 GDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score = 45.8 bits (107), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 12/144 (8%)

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + + +VY W S+IA +A +G + +A+  F  M +    P++ TF   + +CS        
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCS------SL 99

Query: 410 YDFLSKK-----SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           YD  + K     + V+     +     ++D+  + G+L ++      +P   +V  W+S+
Sbjct: 100 YDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIP-ERNVVSWTSM 158

Query: 465 LRACRCHQNVKLAEHAFKHLTETD 488
           +     ++  + A   FK     D
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVD 182


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/555 (36%), Positives = 304/555 (54%), Gaps = 65/555 (11%)

Query: 154 PNRDVISWNTMISCYT-----SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           P  +   WNT+I  +        G     + +  +M   GV PD  T   L+ +      
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L +G+++H  +    + I   +   L+ MY  CG +G A+++    EI + D+  W +++
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFD--EIPQPDLPSWNSII 137

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----------------------QD 306
           +   ++   D AR LF  M ERN+ISW+ MI+G +                       + 
Sbjct: 138 NANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRP 197

Query: 307 AEFKYK----SCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLF 347
            EF       +C  +GAL HG W H YI K  + +D               ++E A  +F
Sbjct: 198 NEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVF 257

Query: 348 SEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           S +   K+V  W+++I+  AM G A++ + LF +M   G +P+ VTF+A+  AC HGGLV
Sbjct: 258 SNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLV 317

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
            EG D+L + +  Y+I P +QHYGCMVDL GRAG ++E+ N + SMP+ PDV +W +LL 
Sbjct: 318 SEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLS 377

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
             R H +++  E A K L E +P N GA+VLL+N+YAK GR +D+  +R  +  MG+KK 
Sbjct: 378 GSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKV 437

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------Q 571
            G SLIE GG +H+F  GD  +P + +I++ML EI   L+ +G                +
Sbjct: 438 PGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGK 497

Query: 572 ETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           E +L  H E+LA+A+G + TS  T IRIV NLRIC DCH  +K+ S+V++REI++RD  R
Sbjct: 498 ELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNR 557

Query: 631 FHRFQGGQCSCRDYW 645
           FH F  G CSCRDYW
Sbjct: 558 FHHFTQGLCSCRDYW 572



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 27/236 (11%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+ ++   L  DP + T +       G+LG+A+Q+  +  +P++  WNSII        
Sbjct: 86  VHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANF---- 141

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                              + G +     LF  +P R+VISW+ MI+ Y   G Y+E L 
Sbjct: 142 -------------------QAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALA 182

Query: 180 LLSKM---GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
           L  +M   G   V P+E TM  +++A  +L  LE GK  H ++++  M +   L   L+D
Sbjct: 183 LFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALID 242

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
           MY KCG + +A  +      ++ DV+ W+ ++SG       +E   LF +M+ + +
Sbjct: 243 MYAKCGSVEKATWVFSNLGPNK-DVMAWSAMISGLAMHGLAEECVGLFSKMINQGV 297



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 3/134 (2%)

Query: 139 KCGKLKEVCQLFDKL-PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           KCG +++   +F  L PN+DV++W+ MIS     G+  E +GL SKM  +GV P+ VT +
Sbjct: 246 KCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFL 305

Query: 198 SLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           ++  A      +  GK+ L    E+ ++  +      +VD+Y + G+I EA  ++    +
Sbjct: 306 AVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPM 365

Query: 257 DEVDVVLWTTLVSG 270
            E DV++W  L+SG
Sbjct: 366 -EPDVLVWGALLSG 378


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 306/559 (54%), Gaps = 56/559 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     +FD++   +   WNTMI  Y++     E L L   M    V  +  T   L+
Sbjct: 66  GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A + +   E  + +H  + +          N L+++Y K G I  A+ L    ++D+ D
Sbjct: 126 KACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFD--QVDQRD 183

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--------------QD 306
            V W +++ GY K  E + A  +F+ M ERN+ISWT MISG +               Q 
Sbjct: 184 TVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT 243

Query: 307 AEFKY---------KSCASIGALYHGIWVHVYIKKNQISID---------------NIEL 342
           A  K          ++CA +G L  G W+H YIKK++I ID               ++E 
Sbjct: 244 AGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEE 303

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A ++F ++ EK V +WT++I+ YA+ G  ++A++ F++M+  G +P+Q+TF  +L+ACSH
Sbjct: 304 AIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSH 363

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GLV E         R++  KP ++HYGCMVDLLGRAG L+E+   I +MP+ P+ +IW 
Sbjct: 364 AGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWG 423

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL AC  H N++L +   K L + DP + G ++ LA+I+A AG  +  +R+R ++++ G
Sbjct: 424 ALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQG 483

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL------- 575
           + K  G S+I   G  H+F +GD  +P  +EI  ML +I   L+++G +           
Sbjct: 484 VSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLE 543

Query: 576 ---------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                     H E+LAV FGLIST    TIRIV NLR+C DCH+ +K+ S+VY REI++R
Sbjct: 544 DKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMR 603

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F+ G C+C DYW
Sbjct: 604 DRTRFHLFKDGNCTCGDYW 622



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 170/369 (46%), Gaps = 71/369 (19%)

Query: 49  RSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           ++CSS+   +E ++IH+H+I      +   +  +      +GD+  A+ +  Q D+ +  
Sbjct: 126 KACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTV 185

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
            WNS     +I+GY                   KCG+++   ++F+ +P R++ISW +MI
Sbjct: 186 SWNS-----MIDGY------------------TKCGEIEMAYEIFNHMPERNIISWTSMI 222

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           S     G  +E L L  +M   G+  D V +VS + A   L  L+ GK +H ++++  ++
Sbjct: 223 SGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE 282

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           I   L   L+DMY KCG + EA ++  + E  E  V +WT ++SGY       EA   F 
Sbjct: 283 IDPILGCVLIDMYAKCGDLEEAIEVFRKME--EKGVSVWTAMISGYAIHGRGREALEWFM 340

Query: 286 EM----VERNLISWTLMISGM----LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337
           +M    VE N +++T +++      L  +A+  ++S   I    HG          + SI
Sbjct: 341 KMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERI----HGF---------KPSI 387

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
           ++     DL                     AG  ++A +L   +E    KP+   + ALL
Sbjct: 388 EHYGCMVDLLGR------------------AGLLKEAEEL---IENMPVKPNAAIWGALL 426

Query: 398 SACS-HGGL 405
           +AC  HG L
Sbjct: 427 NACHIHGNL 435


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/538 (37%), Positives = 303/538 (56%), Gaps = 42/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L     +FD +  R V++W ++I+ Y   G+  E + L  +M  EGVSPD  T+ +
Sbjct: 45  KCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITT 104

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A      LE GK++H ++ E+ M+ +  + N L+DMY KCG + +A  +    E+  
Sbjct: 105 VLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVF--LEMPV 162

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D++ W T++ GY K++  +EA  LF +MV       T +   +          +CAS+ 
Sbjct: 163 KDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLACIL---------PACASLA 213

Query: 319 ALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIA 363
           +L  G  VH +I +N    D                  LA  LF  I  K++  WT +IA
Sbjct: 214 SLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIA 273

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y M G    AI  F EM + G +PD+V+FI++L ACSH GL+DEG+ F +      N+K
Sbjct: 274 GYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVK 333

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           PK++HY C+VDLL R+G L  +  FI SMPI PD +IW +LL  CR H +VKLAE   +H
Sbjct: 334 PKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEH 393

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E +P N G +VLLAN YA+A + +++ ++R K+   GLKK  G S IE    VH F +
Sbjct: 394 VFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLA 453

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGL 587
           G+  +P +++I ++L  +   ++++G                +ET+L  H E+LA+AFG+
Sbjct: 454 GNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGI 513

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++     TIR+  NLR+CGDCH   K  S+   REIV+RD+ RFH F+ G C CR +W
Sbjct: 514 LNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 26/229 (11%)

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           MVS++ A     D+ +G+ +H    ++ +    +  N L+DMY KCG +  A  +     
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +    VV WT+L++ Y +    DEA RLF EM    +      I+ +L+        +CA
Sbjct: 61  VRT--VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLH--------ACA 110

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
             G+L +G  VH YI++N +  +               ++E A  +F E+  K++  W +
Sbjct: 111 CNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNT 170

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           +I  Y+      +A+ LF +M     KPD  T   +L AC+    +D G
Sbjct: 171 MIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRG 218


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 217/679 (31%), Positives = 345/679 (50%), Gaps = 91/679 (13%)

Query: 46  MVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           ++  +C+ ++  ++IH  LI  +L  D  +   + +  +F     Y+  +      P I 
Sbjct: 19  LISVACT-VNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIF 77

Query: 106 IWNSIIENQLINGYPQEVF---------AIYLYLVTRTVLLNKC---------------- 140
           ++NS+I   + N    E            +YL+  T  ++L  C                
Sbjct: 78  LYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLV 137

Query: 141 ----------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                                 G+L +  +LFD++P+R V++W  + S YT+ G +RE +
Sbjct: 138 VKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAI 197

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
            L  KM   GV PD   +V ++SA   + DL+ G+ +  ++EE  M+ +  +   LV++Y
Sbjct: 198 DLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLY 257

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KCGK+ +A+ +     + E D+V W+T++ GY  ++   E   LF +M++ NL      
Sbjct: 258 AKCGKMEKARSVFD--SMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA--------------- 343
           I G L+        SCAS+GAL  G W    I +++  + N+ +A               
Sbjct: 316 IVGFLS--------SCASLGALDLGEWGISLIDRHEF-LTNLFMANALIDMYAKCGAMAR 366

Query: 344 -YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
            +++F E+ EK++ +  + I+  A  GH + +  +F + E+ G  PD  TF+ LL  C H
Sbjct: 367 GFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVH 426

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GL+ +G  F +  S VY +K  ++HYGCMVDL GRAG L+++   I  MP+ P+  +W 
Sbjct: 427 AGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWG 486

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL  CR  ++ +LAE   K L   +P N G +V L+NIY+  GR D+ + +R  +   G
Sbjct: 487 ALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKG 546

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL------- 575
           +KK  GYS IE  G VH+F + D  +P S++IY  L ++   ++  G   T+        
Sbjct: 547 MKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVE 606

Query: 576 ---------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                     H E+LAVA GLIST     IR+V NLR+CGDCH  MK+ S++  REIV+R
Sbjct: 607 EEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVR 666

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           DN RFH F  G CSC DYW
Sbjct: 667 DNNRFHCFTNGSCSCNDYW 685


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 298/541 (55%), Gaps = 41/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +K G L +  ++FD++P ++V+SW  +I  Y   G + E LGL   +   G+ PD  T
Sbjct: 146 LYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFT 205

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V ++ A +++ DL  G+ +  ++ ES    +  +   LVDMY KCG + EA+++     
Sbjct: 206 LVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFD--G 263

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + E DVV W+ L+ GY  +    EA  +F EM   N+      + G+        + +C+
Sbjct: 264 MVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGV--------FSACS 315

Query: 316 SIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTS 360
            +GAL  G W    +  ++                   ++  A ++F  +  K+  ++ +
Sbjct: 316 RLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNA 375

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           VI+  AM GH   A  +F +M + G +PD  TF+ LL  C+H GLVD+G+ + S  S V+
Sbjct: 376 VISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVF 435

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           ++ P ++HYGCMVDL  RAG L E+ + I SMP+  +  +W +LL  CR H++ +LAEH 
Sbjct: 436 SVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHV 495

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K L E +P N G +VLL+NIY+ + R D+  +IR  L   G++K  G S +E  G VH+
Sbjct: 496 LKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHE 555

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERLAVA 584
           F  GD  +P S +IY  L  +   L++ G   T+                  H E+LAVA
Sbjct: 556 FLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVA 615

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F LIST  K  IR+V NLR+CGDCH  +K+ S+V  REI++RDN RFH F  G CSCRDY
Sbjct: 616 FALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDY 675

Query: 645 W 645
           W
Sbjct: 676 W 676



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 137/278 (49%), Gaps = 28/278 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F + P+ ++  +NT+I    S   +R+ + + + M   G +PD  T   ++ A T+L  
Sbjct: 57  VFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPH 116

Query: 209 -LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
              +G +LH  + ++       +   LV +Y K G + +A+K+    EI E +VV WT +
Sbjct: 117 YFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFD--EIPEKNVVSWTAI 174

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           + GY++S    EA  LF  ++E  L   +  +  +L         +C+ +G L  G W+ 
Sbjct: 175 ICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRIL--------YACSRVGDLASGRWID 226

Query: 328 VYIKKNQISIDNIELAYDL----------------FSEISEKNVYLWTSVIAAYAMAGHA 371
            Y++++  S+ N+ +A  L                F  + EK+V  W+++I  YA  G  
Sbjct: 227 GYMRESG-SVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMP 285

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           ++A+D+F EM+    +PD    + + SACS  G ++ G
Sbjct: 286 KEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELG 323


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 209/670 (31%), Positives = 348/670 (51%), Gaps = 91/670 (13%)

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           + ++IH+ L+   L     + T++       GD+ +A+Q+      P+I  WN+II    
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 116 INGYPQEVFAIYLYLVTRTV---------------------------------------- 135
            N + Q+   +Y  +    V                                        
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 136 -------LLNKCGKLKEVCQLFD--KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                  L  KC +L     +F+   LP R ++SW  ++S Y   G   E L + S+M  
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
             V PD V +VS+++A T L+DL+ G+++H  + +  ++I   LL  L  MY KCG++  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+ L  +  +   +++LW  ++SGY K+    EA  +F EM+ +++   T+ I+  ++  
Sbjct: 276 AKILFDK--MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS-- 331

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +CA +G+L     ++ Y+ ++    D               ++E A  +F    
Sbjct: 332 ------ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +++V +W+++I  Y + G A++AI L+  ME  G  P+ VTF+ LL AC+H G+V EG+ 
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           F ++ +  + I P+ QHY C++DLLGRAGHL+++   I  MP+ P V++W +LL AC+ H
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           ++V+L E+A + L   DP N G +V L+N+YA A   D ++ +R+++++ GL K +G S 
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL 575
           +E  G +  F  GD  +P  EEI   +  IE  L++ G                 +ET  
Sbjct: 565 VEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLC 624

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H ER+A+A+GLIST + T +RI  NLR C +CH+  K+ S++ +REIV+RD  RFH F+
Sbjct: 625 SHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFK 684

Query: 636 GGQCSCRDYW 645
            G CSC DYW
Sbjct: 685 DGVCSCGDYW 694


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 312/559 (55%), Gaps = 60/559 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L     +F+     +V S++ +I  +    ++    G  S+M + GV P+  T  S++
Sbjct: 93  GRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVL 152

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
               K   LE GK LH    +  +     +   LVD+Y + G +  A++L  +  + E  
Sbjct: 153 ----KSCSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDK--MPERS 206

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-----SGMLNQDAEFKYK--- 312
           +V  TT+++ Y K  E D+AR LF+ M ER+++ W +MI     SG+ N+  +   +   
Sbjct: 207 LVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLV 266

Query: 313 ---------------SCASIGALYHGIWVHVYIKKNQISID---------------NIEL 342
                          +C  +GAL  G W+H YI+   I I+               ++E 
Sbjct: 267 AKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLED 326

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  +F  I +K+V  W S+I  YAM G +Q A+ LF EM ETG KP  +TFI +LSAC H
Sbjct: 327 ARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGH 386

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           GGLV+EG  F       Y I+PK++HYGCMV+LLGRAGHLEE+   + +M I  D  +W 
Sbjct: 387 GGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWG 446

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL  CR H N+KL E   K L +    N G +VLL+N+YA  G  + ++++R  +++ G
Sbjct: 447 TLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHG 506

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------ 570
           ++K+ G S IE    VH+F +G+  +P S+EIY+MLNEI   L+ +G             
Sbjct: 507 IEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLR 566

Query: 571 ---QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
              +E SL+ H E+LA+AFGLIST   TT++IV NLR+C DCH+ MK+ S++  R+IV+R
Sbjct: 567 EEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMR 626

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F+ G CSC DYW
Sbjct: 627 DRNRFHHFEDGLCSCGDYW 645



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 26/251 (10%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P +     V +SCS ++  + +H   I   L  D  + T + +     GD+  A+Q+   
Sbjct: 143 PNAFTFSSVLKSCS-LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQL--- 198

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
                   ++ + E  L++            L T     +K G+L +   LF+ +  RDV
Sbjct: 199 --------FDKMPERSLVS------------LTTMLTCYSKMGELDKARSLFEGMKERDV 238

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           + WN MI  Y   G+  E L L  +M      P+EVT+++++SA  +L  LE G+ +H +
Sbjct: 239 VCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSY 298

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           +E   ++I+  +   L+DMY KCG + +A+ +  R  I + DVV W +++ GY       
Sbjct: 299 IENKGIQINVHVGTALIDMYSKCGSLEDARLVFDR--IRDKDVVAWNSMIVGYAMHGFSQ 356

Query: 279 EARRLFDEMVE 289
            A +LF+EM E
Sbjct: 357 HALQLFEEMTE 367



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 4/135 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG L++   +FD++ ++DV++WN+MI  Y   G  +  L L  +M   G  P ++T
Sbjct: 317 MYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDIT 376

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            + ++SA      +E G++    + +    I   + +Y  +V++  + G + EA  L+  
Sbjct: 377 FIGILSACGHGGLVEEGRSFFRLMRDK-YGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKN 435

Query: 254 YEIDEVDVVLWTTLV 268
             I   D VLW TL+
Sbjct: 436 MTI-AADPVLWGTLL 449



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/83 (20%), Positives = 46/83 (55%)

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            LYH   ++  ++++  ++  ++ +  +F+   E NV+ ++++I ++  +    +A   +
Sbjct: 74  GLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYY 133

Query: 379 LEMEETGTKPDQVTFIALLSACS 401
            +M   G +P+  TF ++L +CS
Sbjct: 134 SQMLSCGVEPNAFTFSSVLKSCS 156


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 199/553 (35%), Positives = 300/553 (54%), Gaps = 59/553 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKLR 207
           LF ++   D+   NT+I  Y       + +   S+M    V  PD  T   L+ A +++ 
Sbjct: 91  LFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIP 150

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L +G+ +H  + +       S+ N+LV MY  CG I  A  +  R    E D   W  +
Sbjct: 151 SLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDR--TPECDGASWNIM 208

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK----------------- 310
           + GY+K      ARR+F+ M +R+++SW++MI+G + Q++ FK                 
Sbjct: 209 IGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYV-QESRFKEGLGLFQDMMGEKIEPN 267

Query: 311 -------YKSCASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLFS 348
                    +CA +GA+  G W+  Y+++  + +                ++E A ++F 
Sbjct: 268 ESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFH 327

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           ++ EKNV  W+++I   A+ G  + A++LF +ME  G KP++VTFI +L+ACSH  LVDE
Sbjct: 328 KMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDE 387

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G  F    + +Y +KP   H+ CMVDL GRAG L+++   I SMP  P+ +IW +LL AC
Sbjct: 388 GCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNAC 447

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H + +L E   K L E DP + G +VLL+NIYA  GR D ++ +R  +R+  + K  G
Sbjct: 448 RIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPG 507

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QET 573
            S I+ G  +H+F +GD  +P  E IY  L E+   L+  G                +ET
Sbjct: 508 CSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKET 567

Query: 574 SL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
           +L  H E+LA+AFGLI T   TTIRI  NLR+C DCHS  K+ S++YNREI++RD  RFH
Sbjct: 568 ALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFH 627

Query: 633 RFQGGQCSCRDYW 645
            F+ G CSC D+W
Sbjct: 628 HFRDGSCSCMDFW 640



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 73/136 (53%), Gaps = 2/136 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG ++   ++F K+  ++V++W+ MI+     G  ++ L L S+M  +GV P+EVT
Sbjct: 312 MYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVT 371

Query: 196 MVSLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            + +++A +  + ++ G +  H       +K +      +VD+Y + G + +AQ ++   
Sbjct: 372 FIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSM 431

Query: 255 EIDEVDVVLWTTLVSG 270
              + +  +W  L++ 
Sbjct: 432 PF-KPNSAIWGALLNA 446


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 217/654 (33%), Positives = 344/654 (52%), Gaps = 79/654 (12%)

Query: 61  HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI--WNSIIENQL--- 115
           H+H++      D  +   V +     G +G+A+++  +  + E K+  WN+++       
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 116 INGYPQEVFAIY--LYLVTRTVLLNKCGKLKEV---CQLFDKLPNRDVISWNTMISCYTS 170
             G  Q +F +     ++T T ++    K+K++    + FD +P R V+SWN M+S Y  
Sbjct: 178 SEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQ 237

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
            G+  E L L  +M   G+ PDE T V++ISA +   D  +  +L   L +  ++++  +
Sbjct: 238 NGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFV 297

Query: 231 LNYLVDMYFKCGKIGEAQKL---LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
              L+DMY KCG IG A+++   LG Y     + V W  ++S Y +    D AR LF+ M
Sbjct: 298 RTALLDMYAKCGSIGAARRIFDELGAYR----NSVTWNAMISAYTRVGNLDSARELFNTM 353

Query: 288 VERNLISWTLMISGMLNQDAE------FK------------------YKSCASIGALYHG 323
             RN+++W  MI+G             FK                    +C  +GAL  G
Sbjct: 354 PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413

Query: 324 IWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
            WV  ++ +NQI +                ++E A  +F E++ ++V  + ++I+ +A  
Sbjct: 414 NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAH 473

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD-FLSKKSRVYNIKPKMQ 427
           GH  +AI+L   M+E G +PD+VTFI +L+ACSH GL++EG   F S K       P + 
Sbjct: 474 GHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD------PAID 527

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HY CMVDLLGR G LE++   +  MP+ P   ++ SLL A R H+ V+L E A   L E 
Sbjct: 528 HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL 587

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P N G  +LL+NIYA AGR  D+ RIR  ++  G+KK  G+S +E GG +HKF   D  
Sbjct: 588 EPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRS 647

Query: 548 NPHSEEIYLMLNEIEMTLQQQG--------LQETSL--------QHRERLAVAFGLISTS 591
           +  S++IY +L E+   +++ G        L++            H E+LA+ + L+ + 
Sbjct: 648 HERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSE 707

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
               IR+V NLR+C DCH+ +K+ S++  R I++RDN RFH F  G CSC+DYW
Sbjct: 708 AGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 233/702 (33%), Positives = 362/702 (51%), Gaps = 112/702 (15%)

Query: 51  CSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIW 107
           C+ +  F   +++HS + + ++  D  +  ++  F    GDL   +++    ++  + +W
Sbjct: 109 CAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC-QLFDKLPNRDVISWNTMIS 166
           N ++      G  +E   ++  +V + +     GK  E   +LFDKL +RDVISWN+MIS
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIE----GKRPESAFELFDKLCDRDVISWNSMIS 224

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            Y S G+   GLG+  +M   G+  D  T++S++        L +GK +H    +S+ + 
Sbjct: 225 GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFER 284

Query: 227 SGSLLNYLVDMYFKCG----------KIGE---------------------AQKLLGRYE 255
             +  N L+DMY KCG          K+GE                     A KLL + E
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME 344

Query: 256 IDEV--DVVLWTTL---------------VSGYVKSNERDE------------------- 279
            + V  DVV  T++               V  Y+K+N  +                    
Sbjct: 345 KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSME 404

Query: 280 -ARRLFDEMVERNLISWTLMISGMLNQDAEFK---YKSCASIGALYHGIWVHVYIKKNQI 335
            A  +F  MV +++ISW  MI G L  D+        +CAS+ AL  G  +H YI +N  
Sbjct: 405 AANSVFSTMVVKDIISWNTMI-GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGY 463

Query: 336 SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
           S D                + LA  LF  I  K++  WT +IA Y M G+  +AI  F E
Sbjct: 464 SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNE 523

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M + G +PD+V+FI++L ACSH GL+++G+ F       +NI+PK++HY CMVDLL R G
Sbjct: 524 MRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTG 583

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
           +L ++  FI ++PI PD +IW +LL  CR + +++LAE   + + E +P N G +VLLAN
Sbjct: 584 NLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLAN 643

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG-DIFNPHSEEIYLMLN 559
           IYA+A + +++ R+R K+   GL+K  G S IE  G V+ F SG +  +PHS+ I  +L 
Sbjct: 644 IYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLK 703

Query: 560 EIEMTLQQQG---------------LQETSL-QHRERLAVAFGLISTSEKTTIRIVNNLR 603
           ++   ++++G                +E +L  H E+LA+AFGL++   + TIR+  NLR
Sbjct: 704 KMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLR 763

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +CGDCH   K  S+   REIV+RD  RFH F+ G CSCR +W
Sbjct: 764 VCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 145/329 (44%), Gaps = 62/329 (18%)

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  S++     L+    GK +H  ++ +++ +  +L   LV  Y  CG + E +++    
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDE--------------------ARRLFDEMVERNLIS 294
           E  + +V LW  +VS Y K  +  E                    A  LFD++ +R++IS
Sbjct: 161 E--KKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218

Query: 295 WTLMISGMLNQDAEFK----YK-------------------SCASIGALYHGIWVHVYIK 331
           W  MISG ++     +    YK                    CA+ G L  G  VH    
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 332 KN----QISIDNIEL-----------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           K+    +I+  N  L           A  +F ++ E+NV  WTS+IA Y   G +  AI 
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIK 338

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           L  +ME+ G K D V   ++L AC+  G +D G D +    +  N++  +     ++D+ 
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD-VHDYIKANNMESNLFVCNALMDMY 397

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLL 465
            + G + E+AN + S  +  D+  W++++
Sbjct: 398 AKCGSM-EAANSVFSTMVVKDIISWNTMI 425


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 219/661 (33%), Positives = 345/661 (52%), Gaps = 125/661 (18%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           SC S+++ ++ H+HLITT L+  P                                    
Sbjct: 24  SCKSMNQIKQTHAHLITTGLILHP------------------------------------ 47

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI---- 165
           I  N+L+                + ++ +  G L    QLFD++P  DV  +NTMI    
Sbjct: 48  ITANKLL----------------KVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHA 91

Query: 166 ----SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
               S + SM ++      LS +   G  P+  T V +  A      +  G+ + +   +
Sbjct: 92  VIPTSSHNSMRIF------LSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 145

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
             ++ +  + N ++ MY   G + EA+++   + +D+ D+  W  ++ GYV S E   A+
Sbjct: 146 IGLESNLFVTNAMIRMYANWGLVDEARRVFD-WSLDQ-DLYSWNIMIGGYVGSGEIGRAK 203

Query: 282 RLFDEMVERNLISWTLMISGMLN-------------------QDAEFKYKS----CASIG 318
            +FDEM ER+++SWT +I+G +                       EF   S    CA++ 
Sbjct: 204 EMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLV 263

Query: 319 ALYHGIWVHVYIKKNQISIDNIELA--YDLFSEISEKN---------------VYLWTSV 361
           AL  G W+HVYI K++I ++   LA   D++++  E +               V+ W ++
Sbjct: 264 ALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAM 323

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I  YAM G +++AIDLF +M+     P++VTF+ALL+ACSHG LV+EG  +    +  Y 
Sbjct: 324 IGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYG 383

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I+P+++HYGCMVDLLGR+G L+E+   + +MP+ PD +IW +LL ACR H++++  +   
Sbjct: 384 IEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIG 443

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           K + E D  + G HVLLAN+Y+ +G+ D+   +R K+   G KK  G S IE  G  H+F
Sbjct: 444 KIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQF 503

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL-QHRERLAVA 584
             GD  +P ++++YL L+E+   L+  G                 +ET+L +H E+LA+A
Sbjct: 504 LVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIA 563

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI+T   T IRIV NLR+C DCH   K  S+VY REI++RD  R+H F+ G CSC+DY
Sbjct: 564 FGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDY 623

Query: 645 W 645
           W
Sbjct: 624 W 624


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 213/649 (32%), Positives = 336/649 (51%), Gaps = 71/649 (10%)

Query: 61  HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP 120
           H++++    + D  I   + +     G +  A+ +  Q  E  +  WNS+I     +G  
Sbjct: 118 HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 177

Query: 121 QEVFAIYLYLVTRTVL--------LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG 172
            E   ++  +  R ++          K G L+   + FD++P R V+SWN M S Y    
Sbjct: 178 TEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKE 237

Query: 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
             +E L L  +M  EG++PD+ T V  IS+ + + D  +  ++   +++  + ++  +  
Sbjct: 238 CPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKT 297

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            L+DM+ K G +  A+ +       + + V W  ++S Y +  +   AR LFD M +R++
Sbjct: 298 ALLDMHAKFGNLEIARNIFDELG-SQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDV 356

Query: 293 ISWTLMISGMLNQDAE-------FK------------------YKSCASIGALYHGIWVH 327
           +SW  MI+G   Q+ E       FK                    +C  IGAL    WV 
Sbjct: 357 VSWNSMIAGYA-QNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVL 415

Query: 328 VYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
             +++  I +                ++  A+ +F  +  ++V  + ++I+ +A  GH +
Sbjct: 416 DIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGK 475

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +AI L L MEE G +PD VT+I +L+ACSH GL++EG +            P + HY CM
Sbjct: 476 EAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACM 530

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAG L+E+   I SMP+ P   ++ SLL A R H+ V L E A   L E +P N 
Sbjct: 531 VDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNL 590

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G +VLL+NIYA  GR +D+ R+R  ++  GLKK +G S +E  G VHKFT GD  +  S+
Sbjct: 591 GNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSK 650

Query: 553 EIYLMLNEIEMTLQQQGL---QETSLQ-------------HRERLAVAFGLISTSEKTTI 596
           +IY +L E+E  +++ G    +  +L+             H E+LA+ F L+ +   TTI
Sbjct: 651 DIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTI 710

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R+V NLRIC DCH+ +K+ S++  REIV+RDN RFH F  G CSC DYW
Sbjct: 711 RVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 213/649 (32%), Positives = 336/649 (51%), Gaps = 71/649 (10%)

Query: 61  HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP 120
           H++++    + D  I   + +     G +  A+ +  Q  E  +  WNS+I     +G  
Sbjct: 118 HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 177

Query: 121 QEVFAIYLYLVTRTVL--------LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG 172
            E   ++  +  R ++          K G L+   + FD++P R V+SWN M S Y    
Sbjct: 178 TEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKE 237

Query: 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
             +E L L  +M  EG++PD+ T V  IS+ + + D  +  ++   +++  + ++  +  
Sbjct: 238 CPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKT 297

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            L+DM+ K G +  A+ +       + + V W  ++S Y +  +   AR LFD M +R++
Sbjct: 298 ALLDMHAKFGNLEIARNIFDELG-SQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDV 356

Query: 293 ISWTLMISGMLNQDAE-------FK------------------YKSCASIGALYHGIWVH 327
           +SW  MI+G   Q+ E       FK                    +C  IGAL    WV 
Sbjct: 357 VSWNSMIAG-YAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVL 415

Query: 328 VYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
             +++  I +                ++  A+ +F  +  ++V  + ++I+ +A  GH +
Sbjct: 416 DIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGK 475

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +AI L L MEE G +PD VT+I +L+ACSH GL++EG +            P + HY CM
Sbjct: 476 EAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACM 530

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAG L+E+   I SMP+ P   ++ SLL A R H+ V L E A   L E +P N 
Sbjct: 531 VDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNL 590

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G +VLL+NIYA  GR +D+ R+R  ++  GLKK +G S +E  G VHKFT GD  +  S+
Sbjct: 591 GNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSK 650

Query: 553 EIYLMLNEIEMTLQQQGL---QETSLQ-------------HRERLAVAFGLISTSEKTTI 596
           +IY +L E+E  +++ G    +  +L+             H E+LA+ F L+ +   TTI
Sbjct: 651 DIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTI 710

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R+V NLRIC DCH+ +K+ S++  REIV+RDN RFH F  G CSC DYW
Sbjct: 711 RVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/585 (35%), Positives = 317/585 (54%), Gaps = 91/585 (15%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD +   +V  WN MI          + + L  +M      P++ T  +++ A +   
Sbjct: 92  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAG 151

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            +  G  +H  L +  +   G +L+  + MY   G++ EA+++L   +  EVD V W  +
Sbjct: 152 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD-KGGEVDAVCWNAM 210

Query: 268 VSGYVKSNERDEARRLF--------------------------------DEMVERNLISW 295
           + GY++  E + AR LF                                DEM ER+ ISW
Sbjct: 211 IDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISW 270

Query: 296 TLMISGMLNQDAEFK-----------------------YKSCASIGALYHGIWVHVYIKK 332
           + MI G + +    +                         +CA++GAL  G W+H Y K+
Sbjct: 271 SAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 330

Query: 333 NQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           N I +D                I+LA+++F ++S K V  W ++I   AM G A+ AIDL
Sbjct: 331 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 390

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M+     P+++TF+ +L+AC+HGGLV +G    +   + Y ++P+++HYGC+VDLLG
Sbjct: 391 FSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 447

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAG L E+   ++S+P  P  ++W +LL ACR H NV+L E   K L E +P N G + L
Sbjct: 448 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 507

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG-GFVHKFTSGDIFNPHSEEIYL 556
           L+NIYAKAGR +++  +R  +++ G+K   G S+I+ G G VHKF  GD  +P  ++IY 
Sbjct: 508 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQ 567

Query: 557 MLNEIEMTLQQQGLQ---------------ETSL-QHRERLAVAFGLISTSEKTTIRIVN 600
           ML++++  LQ +G +               ET++ QH E+LA+ FGLI+TS  TTIRIV 
Sbjct: 568 MLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVK 627

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCHS  K+ SQVYNREI++RD  R+H F+ G CSC+D+W
Sbjct: 628 NLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 228/657 (34%), Positives = 345/657 (52%), Gaps = 89/657 (13%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           + +++ +  +IH+ +   NL  + ++ TQ+         L YA  I R  D P + ++N+
Sbjct: 49  ASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNA 108

Query: 110 II----ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           +I    EN    G     F + L L  R   L     LK V  L D              
Sbjct: 109 LIRGLAENSRFEGSVSH-FVLMLRLSIRPDRLTLPFVLKSVAALVD-------------- 153

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
                +G+ R   G + K+G E    D    VSL+    K+ +L  G  L LF E     
Sbjct: 154 -----VGLGRCLHGGVMKLGLEF---DSFVRVSLVDMYVKIGELGFG--LQLFDESPQRN 203

Query: 226 ISGSLL--NYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARR 282
            + S+L  N L++    C K+G+  K    +E + E +   W +L++G+V++ + D AR 
Sbjct: 204 KAESILLWNVLIN---GCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARE 260

Query: 283 LFDEMVERNLISWTLMISGM-LNQDAEFKYK----------------------SCASIGA 319
           LF +M E+N++SWT MI+G   N D E                          +C  IGA
Sbjct: 261 LFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGA 320

Query: 320 LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H Y+  N   ++               NI+ A  +F E   K++  W+ +I  
Sbjct: 321 LQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWG 380

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           +A+ G   +A+  F++M+  G  PD+V F+A+L+ACSH G VD+G +F       Y+I+P
Sbjct: 381 WAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEP 440

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            M+HY  +VDLLGRAG L+E+ +FI SMPI PD  IW +L  ACR H+N+++AE   + L
Sbjct: 441 TMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKL 500

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            + +P + G++V L+N+YA  GR +D+ R+R  +++ G++K  G+S IE  G VH F +G
Sbjct: 501 LQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAG 560

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLI 588
           D  +  +EEI L L EI  + +Q+G + ET+                 H E+LA+AFGLI
Sbjct: 561 DHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLI 620

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ST+  +TIRIV NLR+CGDCHS MK  S++  REI++RD  RFH F+ G CSC DYW
Sbjct: 621 STAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 299/559 (53%), Gaps = 60/559 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L     LF +  N  V  W  +I  +   G++ + L   ++M  +GV P+  T  S++
Sbjct: 23  GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL 82

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
               KL  +E GK LH    +        +   L+D+Y + G +  AQ+L     + E  
Sbjct: 83  ----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD--TMPEKS 136

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLN 304
           +V  T +++ Y K  E D AR LFD M ER+ + W +MI G                ML 
Sbjct: 137 LVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK 196

Query: 305 QDAEFK-------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIEL 342
             A+           +C  +GAL  G WVH YI+ N I  +               ++E 
Sbjct: 197 AKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLED 256

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  +F +I +K+V  W S+I  YAM G +Q+A+ LF  M   G  P  +TFI +LSAC H
Sbjct: 257 ARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH 316

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            G V EG+D  +K    Y I+PK++HYGCMV+LLGRAGH+E++   + +M I PD  +W 
Sbjct: 317 SGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWG 376

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL ACR H  + L E   + L + +  N G ++LL+NIYA  G  D ++R+R  ++D G
Sbjct: 377 TLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSG 436

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------ 570
           +KK+ G S IE    VH+F +G + +P  +EIY+ML EI   L+  G             
Sbjct: 437 VKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIG 496

Query: 571 ---QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
              +E SL+ H E+LA+AFGLI+T   TTI+IV NLR+C DCH   K+ S++  R+IV+R
Sbjct: 497 ETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVR 556

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F  G CSC DYW
Sbjct: 557 DRNRFHHFVNGSCSCGDYW 575


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 299/559 (53%), Gaps = 60/559 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L     LF +  N  V  W  +I  +   G++ + L   ++M  +GV P+  T  S++
Sbjct: 76  GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL 135

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
               KL  +E GK LH    +        +   L+D+Y + G +  AQ+L     + E  
Sbjct: 136 ----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD--TMPEKS 189

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLN 304
           +V  T +++ Y K  E D AR LFD M ER+ + W +MI G                ML 
Sbjct: 190 LVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK 249

Query: 305 QDAEFK-------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIEL 342
             A+           +C  +GAL  G WVH YI+ N I  +               ++E 
Sbjct: 250 AKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLED 309

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  +F +I +K+V  W S+I  YAM G +Q+A+ LF  M   G  P  +TFI +LSAC H
Sbjct: 310 ARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH 369

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            G V EG+D  +K    Y I+PK++HYGCMV+LLGRAGH+E++   + +M I PD  +W 
Sbjct: 370 SGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWG 429

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL ACR H  + L E   + L + +  N G ++LL+NIYA  G  D ++R+R  ++D G
Sbjct: 430 TLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSG 489

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------ 570
           +KK+ G S IE    VH+F +G + +P  +EIY+ML EI   L+  G             
Sbjct: 490 VKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIG 549

Query: 571 ---QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
              +E SL+ H E+LA+AFGLI+T   TTI+IV NLR+C DCH   K+ S++  R+IV+R
Sbjct: 550 ETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVR 609

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F  G CSC DYW
Sbjct: 610 DRNRFHHFVNGSCSCGDYW 628


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 232/702 (33%), Positives = 363/702 (51%), Gaps = 112/702 (15%)

Query: 51  CSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIW 107
           C+ +  F   +++HS + + ++  D  +  ++  F    GDL   +++    ++  + +W
Sbjct: 109 CAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC-QLFDKLPNRDVISWNTMIS 166
           N ++      G  +E   ++  +V + +     GK  E   +LFDKL +RDVISWN+MIS
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIE----GKRPESAFELFDKLCDRDVISWNSMIS 224

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            Y S G+   GLG+  +M   G+  D  T++S++        L +GK +H    +S+ + 
Sbjct: 225 GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFER 284

Query: 227 SGSLLNYLVDMYFKCG----------KIGE---------------------AQKLLGRYE 255
             +  N L+DMY KCG          K+GE                     A KLL + E
Sbjct: 285 RINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME 344

Query: 256 IDEV--DVVLWTTL---------------VSGYVKSNERDE------------------- 279
            + V  DVV  T++               V  Y+K+N  +                    
Sbjct: 345 KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSME 404

Query: 280 -ARRLFDEMVERNLISWTLMISGMLNQDAEFK---YKSCASIGALYHGIWVHVYIKKNQI 335
            A  +F  MV +++ISW  MI G L  D+        +CAS+ AL  G  +H YI +N  
Sbjct: 405 AANSVFSTMVVKDIISWNTMI-GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGY 463

Query: 336 SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
           S D                + LA  LF  I  K++  WT +IA Y M G+  +AI  F E
Sbjct: 464 SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNE 523

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M + G +PD+V+FI++L ACSH GL+++G+ F       +NI+PK++HY CMVDLL R G
Sbjct: 524 MRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTG 583

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
           +L ++  F+ ++PI PD +IW +LL  CR + +++LAE   + + E +P N G +VLLAN
Sbjct: 584 NLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLAN 643

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG-DIFNPHSEEIYLMLN 559
           IYA+A + +++ R+R K+   GL+K  G S IE  G V+ F SG +  +PHS+ I  +L 
Sbjct: 644 IYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLK 703

Query: 560 EIEMTLQQQG---------------LQETSL-QHRERLAVAFGLISTSEKTTIRIVNNLR 603
           ++   ++++G                +E +L  H E+LA+AFGL++   + TIR+  NLR
Sbjct: 704 KMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLR 763

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +CGDCH   K  S+   REIV+RD+ RFH F+ G CSCR +W
Sbjct: 764 VCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 146/329 (44%), Gaps = 62/329 (18%)

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  S++     L+    GK +H  ++ +++ + G+L   LV  Y  CG + E +++    
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDE--------------------ARRLFDEMVERNLIS 294
           E  + +V LW  +VS Y K  +  E                    A  LFD++ +R++IS
Sbjct: 161 E--KKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218

Query: 295 WTLMISGMLNQDAEFK----YK-------------------SCASIGALYHGIWVHVYIK 331
           W  MISG ++     +    YK                    CA+ G L  G  VH    
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 332 KN----QISIDNIEL-----------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           K+    +I+  N  L           A  +F ++ E+NV  WTS+IA Y   G +  AI 
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIK 338

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           L  +ME+ G K D V   ++L AC+  G +D G D +    +  N++  +     ++D+ 
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD-VHDYIKANNMESNLFVCNALMDMY 397

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLL 465
            + G + E+AN + S  +  D+  W++++
Sbjct: 398 AKCGSM-EAANSVFSTMVVKDIISWNTMI 425


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 215/641 (33%), Positives = 339/641 (52%), Gaps = 73/641 (11%)

Query: 39  PVSLDVIMVERSCSSID---EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P S     + +SC+      E ++IH H++      D  + T +       G L  A+++
Sbjct: 87  PDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKV 146

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
                  ++  + ++I   +  GY                       ++   +LFD++P 
Sbjct: 147 FDISSHRDVVSYTALIAGYVSRGY-----------------------IESAQKLFDEIPG 183

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGA-EGVSPDEVTMVSLISARTKLRDLEMGKN 214
           +DV+SWN MIS Y   G Y+E L L  +M     V PDE TMV+++SA  +   +E+G++
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +H ++ +     +  ++N L+D+Y K G++  A +L     +   DV+ W TL+ GY   
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFD--GLWNKDVISWNTLIGGYTHM 301

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN- 333
           N   EA  LF EM+        + +  +L         +CA +GA+  G W+HVYI K  
Sbjct: 302 NLYKEALLLFQEMLRSGETPNDVTMLSIL--------PACAHLGAIDIGRWIHVYINKKL 353

Query: 334 ----------QISI-------DNIELAYDLF-SEISEKNVYLWTSVIAAYAMAGHAQKAI 375
                     Q S+        +I+ A  +F S +S +++  W ++I+ +AM G A  A 
Sbjct: 354 KGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAF 413

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           D+F  M   G +PD +TF+ LLSACSH G++D G +     +R Y I PK++HYGCM+DL
Sbjct: 414 DIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDL 473

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           LG +G  +E+   I +MP+ PD  IW SLL+AC+ H N++L E   K L + +P N G++
Sbjct: 474 LGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSY 533

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL-GYSLIEQGGFVHKFTSGDIFNPHSEEI 554
           VLL+NIYA AGR +++++IR  L D G+KK++ G S IE    VH+F  GD  +P + EI
Sbjct: 534 VLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREI 593

Query: 555 YLML----------------NEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRI 598
           Y ML                +E+   ++++  +     H E+LA+AFGLIST   T + I
Sbjct: 594 YGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTI 653

Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           + NLR+C +CH   K+ S++Y REI+ RD  RF  F+ G C
Sbjct: 654 MKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 183/410 (44%), Gaps = 56/410 (13%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            +FD +   +++ WNTM   +         L L   M + G+ PD  T   L+ +  K +
Sbjct: 44  SVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSK 103

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI-DEVDVVLWTT 266
             + G+ +H  + +    +   +   L+ MY + G++ +A+K+   ++I    DVV +T 
Sbjct: 104 IRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKV---FDISSHRDVVSYTA 160

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK---------------- 310
           L++GYV     + A++LFDE+  ++++SW  MISG + +   +K                
Sbjct: 161 LIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYV-ETGNYKEALELFKEMMMMTNVR 219

Query: 311 ---------YKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDL 346
                      +CA   ++  G  VH +I  +  +         ID       +E A +L
Sbjct: 220 PDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACEL 279

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  +  K+V  W ++I  Y      ++A+ LF EM  +G  P+ VT +++L AC+H G +
Sbjct: 280 FDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 339

Query: 407 DEG---YDFLSKKSR--VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           D G   + +++KK +  V N+         ++D+  + G ++ +     S      +S W
Sbjct: 340 DIGRWIHVYINKKLKGVVTNVSSLQT---SLIDMYAKCGDIDAAQQVFDSSMSNRSLSTW 396

Query: 462 SSLLRACRCHQNVKLAEHAFK--HLTETDPLNDGAHVLLANIYAKAGRLD 509
           ++++     H     A   F    +   +P +D   V L +  + +G LD
Sbjct: 397 NAMISGFAMHGRANAAFDIFSRMRMNGIEP-DDITFVGLLSACSHSGMLD 445



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 35/223 (15%)

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
           D    A  +F  I E N+ +W ++   +A++     A+ L+L M   G  PD  TF  LL
Sbjct: 37  DGFPYAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLL 96

Query: 398 SACS-----------HGGLVDEGYDF-----------------LSKKSRVYNIKP--KMQ 427
            +C+           HG ++  G+D                  L    +V++I     + 
Sbjct: 97  KSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVV 156

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH---L 484
            Y  ++      G++E +      +P   DV  W++++       N K A   FK    +
Sbjct: 157 SYTALIAGYVSRGYIESAQKLFDEIP-GKDVVSWNAMISGYVETGNYKEALELFKEMMMM 215

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           T   P ++   V + +  A++  ++    +   + D G    L
Sbjct: 216 TNVRP-DESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNL 257


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/539 (36%), Positives = 301/539 (55%), Gaps = 42/539 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +   +FD+LP ++V++W  +I+ Y   G     L LL  M    V+P+++T  S
Sbjct: 195 KCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFAS 254

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++   T    LE GK +H ++ +S       ++N L+ MY KCG + EA+KL    ++  
Sbjct: 255 ILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFS--DLPH 312

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            DVV WT +V+GY +    DEA  LF  M ++ +    +  + +L         SC+S  
Sbjct: 313 RDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLT--------SCSSPA 364

Query: 319 ALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
            L  G  +H           VY++   +S+     +++ A  +F+++SE+NV  WT++I 
Sbjct: 365 FLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIIT 424

Query: 364 AY-AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
              A  G  ++A++ F +M++ G KPD+VTF ++LSAC+H GLV+EG          Y I
Sbjct: 425 GCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGI 484

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           KP ++HY C VDLLGRAGHLEE+ N I SMP  P  S+W +LL ACR H +V+  E A +
Sbjct: 485 KPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAE 544

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
           ++ + DP +DGA+V L++IYA AGR +D  ++R  +    + K+ G S IE  G VH F 
Sbjct: 545 NVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFH 604

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFG 586
             D  +P SE+IY+ L ++   +++ G                 +     H ERLA+ +G
Sbjct: 605 VEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYG 664

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           L+ T     IRIV NLR+CGDCH+  K  S+V  REI+ RD  RFH F  G CSC D+W
Sbjct: 665 LMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 192/400 (48%), Gaps = 53/400 (13%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           I++ G +P     N  +EN L++ Y                   KCG L +  ++FD + 
Sbjct: 73  ILKSGIQP-----NRYLENTLLSMYA------------------KCGSLTDARRVFDSIR 109

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
           +R+++SW  MI  + +     E       M   G  PD+VT VSL++A T    L++G+ 
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +H+ + E+ +++   +   LV MY KCG I +A+ +  R  + E +VV WT L++GY + 
Sbjct: 170 VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDR--LPEKNVVTWTLLIAGYAQQ 227

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
            + D A  L + M +  +    +  + +L        + C +  AL HG  VH YI ++ 
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASIL--------QGCTTPAALEHGKKVHRYIIQSG 279

Query: 335 ---------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
                               +E A  LFS++  ++V  WT+++  YA  G   +AI+LF 
Sbjct: 280 YGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFR 339

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV-YNIKPKMQHYGCMVDLLGR 438
            M++ G KPD++TF ++L++CS    + EG     +     YN+   +Q    +V +  +
Sbjct: 340 RMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAK 397

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            G +++++     M    +V  W++++  C C Q+ +  E
Sbjct: 398 CGSMDDASLVFNQMS-ERNVVAWTAIITGC-CAQHGRCRE 435



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 144/315 (45%), Gaps = 25/315 (7%)

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           +S     G  +E LG+++ M  +G          L+    +LR LE G+ +H  + +S +
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
           + +  L N L+ MY KCG + +A+++     I + ++V WT ++  +V  N+  EA + +
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFD--SIRDRNIVSWTAMIEAFVAGNKNLEAFKCY 136

Query: 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH------GIWVHVYIKKNQISI- 337
           + M         +    +LN    F       +G   H      G+ +   +  + + + 
Sbjct: 137 ETMKLAGCKPDKVTFVSLLNA---FTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMY 193

Query: 338 ---DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
               +I  A  +F  + EKNV  WT +IA YA  G    A++L   M++    P+++TF 
Sbjct: 194 AKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFA 253

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGCMVDLLGRAGHLEESANFIT 450
           ++L  C+    ++ G     KK   Y I+     ++     ++ +  + G LEE+    +
Sbjct: 254 SILQGCTTPAALEHG-----KKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFS 308

Query: 451 SMPIPPDVSIWSSLL 465
            +P   DV  W++++
Sbjct: 309 DLP-HRDVVTWTAMV 322


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 312/541 (57%), Gaps = 51/541 (9%)

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
           K+  V +LFD++P RDV+SWNT+I+     GMY E L ++ +MG E + PD  T+ S++ 
Sbjct: 148 KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILP 207

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
             T+  ++  GK +H +           + + L+DMY KC ++     +   + +   D 
Sbjct: 208 IFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQV--ELSVCAFHLLSNRDA 265

Query: 262 VLWTTLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           + W ++++G V++   D+     RR+  E V+   +S++ +I             +CA +
Sbjct: 266 ISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIP------------ACAHL 313

Query: 318 GALYHGIWVHVYIKK-----NQI----------SIDNIELAYDLFS--EISEKNVYLWTS 360
            AL  G  +H YI +     N+              NI++A  +F+  E+ ++++  WT+
Sbjct: 314 TALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTA 373

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I   AM GHA  A+ LF EM   G KP  V F+A+L+ACSH GLVDEG+ + +   R +
Sbjct: 374 IIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDF 433

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            + P ++HY  + DLLGRAG LEE+ +FI++M   P  S+WS+LL ACR H+N++LAE  
Sbjct: 434 GVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKV 493

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
              +   DP N GAHV+++NIY+ A R  D +++R+++R  GLKK    S IE G  VH 
Sbjct: 494 VNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHT 553

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQHR--------ERLAVA 584
           F +GD  +P+ ++I   LN +   ++++G        L +   +H+        ERLA+A
Sbjct: 554 FLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIA 613

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FG+IST+  TTIR++ N+R+C DCH+ +K  +++  REI++RDN RFH F+ G CSC DY
Sbjct: 614 FGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDY 673

Query: 645 W 645
           W
Sbjct: 674 W 674



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 145/347 (41%), Gaps = 41/347 (11%)

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           ++W  +I CY S G+ R  L   + + + G+SPD     SL+ A T  +   + ++LH  
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 219 LEESTMKISGSLLNYLVDMYFK----------------------CGKIGEAQKLLGRYEI 256
           +            N L++MY K                        KI   +KL  R  +
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML---NQDAEFKYKS 313
              DVV W T+++G  ++   +EA  +  EM + NL   +  +S +L    + A      
Sbjct: 162 R--DVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGK 219

Query: 314 CASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
                A+ HG    V+I  + I +      +EL+   F  +S ++   W S+IA     G
Sbjct: 220 EIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNG 279

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH- 428
              + +  F  M +   KP QV+F +++ AC+H   ++     L K+   Y I+      
Sbjct: 280 RFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALN-----LGKQLHAYIIRLGFDDN 334

Query: 429 ---YGCMVDLLGRAGHLEESANFITSMPI-PPDVSIWSSLLRACRCH 471
                 ++D+  + G+++ +      + +   D+  W++++  C  H
Sbjct: 335 KFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 218/682 (31%), Positives = 343/682 (50%), Gaps = 93/682 (13%)

Query: 37  VCPVSLDVIMVERSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           VCP +       R C ++   D  +++HS LI      D  +   + +      D     
Sbjct: 171 VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCL 230

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL----------------------- 130
           ++  +  E     WNSII  +   G+  +   ++L +                       
Sbjct: 231 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCAN 290

Query: 131 ------------------VTRTVLL--------NKCGKLKEVCQLFDKLPNRDVISWNTM 164
                             +T+ +++        ++CG+L    ++F+++  R+  SWN+M
Sbjct: 291 QRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSM 350

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           I  Y   G  +E L L  +M   G+ PD  ++ S++S+   L D + G+ LH F+  +TM
Sbjct: 351 IEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTM 410

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
           +  G L   LVDMY KCG +  A K+  +    + +  LW ++++GY     + E+   F
Sbjct: 411 EEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHF 470

Query: 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAY 344
            EM+E ++    L +  ++N               +     V +Y K   I+      A 
Sbjct: 471 LEMLESDIEYDVLTMVTIVNL-------------LVLETALVDMYSKCGAIT-----KAR 512

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F  ++ KN+  W ++I+ Y+  G +++A+ L+ EM + G  P++VTF+A+LSACSH G
Sbjct: 513 TVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTG 572

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           LV+EG    +     YNI+ K +HY CMVDLLGRAG LE++  F+  MPI P+VS W +L
Sbjct: 573 LVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGAL 632

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           L ACR H+++ +   A + L E DP N G +V+++NIYA AGR  ++  IR  ++  G+K
Sbjct: 633 LGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVK 692

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---QETS------- 574
           K  G S IE    +  F +G   +P +EEIY  L    +TLQ +GL    +TS       
Sbjct: 693 KDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLR--HLTLQSKGLGYIPDTSFILQNVK 750

Query: 575 -----------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
                      LQH ERLA++ GLIS  +K+TIR+  NLRICGDCH+  K  S++  R I
Sbjct: 751 DIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRI 810

Query: 624 VIRDNGRFHRFQGGQCSCRDYW 645
           + RD  RFH F+ G+CSC DYW
Sbjct: 811 IARDTNRFHHFENGKCSCGDYW 832



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 190/405 (46%), Gaps = 54/405 (13%)

Query: 111 IENQLI-NGYPQEVFAIYLYLVTRTVLL-NKCGKLKEVC---QLFDKLPNRDVISWNTMI 165
           I  Q+I NGY  +      YL+T+ ++L  + G L ++C   +LF+++P R++ +WNTMI
Sbjct: 93  IHTQMISNGYNPDA-----YLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMI 147

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
             Y  +  Y E  G+  +M   GV PD  T  S +     LR  + GK +H  L     K
Sbjct: 148 LAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 207

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
               + N L+DMY KC       K+    E+ E + V W +++S   +    ++A  LF 
Sbjct: 208 GDTFVGNALIDMYAKCDDEESCLKVFD--EMGERNQVTWNSIISAEAQFGHFNDALVLFL 265

Query: 286 EM------VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI---- 335
            M      ++ +  ++T +++   NQ  + +       G   H   +   I KN I    
Sbjct: 266 RMQESEDGIQPDQFTFTTLLTLCANQRNDNQ-------GRQIHAHLIRANITKNIIVETE 318

Query: 336 ------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                     +  A ++F+ ++E+N Y W S+I  Y   G  Q+A+ LF +M+  G KPD
Sbjct: 319 LVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPD 378

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSR-VYN--IKPKMQHYG----CMVDLLGRAGHL 442
             +  ++LS+C    L D      S+K R ++N  ++  M+  G     +VD+  + G +
Sbjct: 379 CFSLSSMLSSCV--SLSD------SQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 430

Query: 443 EESAN-FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           + +   +  ++    + ++W+S+L     + N  L + +F H  E
Sbjct: 431 DYAWKVYDQTIKKDRNTALWNSILAG---YANKGLKKESFNHFLE 472


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 310/566 (54%), Gaps = 62/566 (10%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG++     +FD++ +RDV++WNTMI  Y   G+  E   L  +M    V PDE+ + ++
Sbjct: 159 CGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNI 218

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +SA  +  ++   + ++ FL E+ +++   LL  LV MY   G +  A++   +  +   
Sbjct: 219 VSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR-- 276

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--------- 310
           ++ + T +VSGY K    D+A+ +FD+  +++L+ WT MIS  +  D   +         
Sbjct: 277 NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC 336

Query: 311 --------------YKSCASIGALYHGIWVHVYIKKN----QISIDN-----------IE 341
                           +CA++G L    WVH  I  N    ++SI+N           ++
Sbjct: 337 CSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLD 396

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
              D+F ++  +NV  W+S+I A +M G A  A+ LF  M++   +P++VTF+ +L  CS
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GLV+EG    +  +  YNI PK++HYGCMVDL GRA  L E+   I SMP+  +V IW
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            SL+ ACR H  ++L + A K + E +P +DGA VL++NIYA+  R +D+  IR  + + 
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEK 576

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------- 570
            + K+ G S I+Q G  H+F  GD  +  S EIY  L+E+   L+  G            
Sbjct: 577 NVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDV 636

Query: 571 -----QETSLQHRERLAVAFGLISTSEKT------TIRIVNNLRICGDCHSFMKVTSQVY 619
                ++  L H E+LA+ FGL++  ++        IRIV NLR+C DCH F K+ S+VY
Sbjct: 637 EEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVY 696

Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
            REI++RD  RFH ++ G CSCRDYW
Sbjct: 697 EREIIVRDRTRFHCYKNGLCSCRDYW 722


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 300/541 (55%), Gaps = 56/541 (10%)

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           + WN +IS +   G +         M         VT VS++SA  K +DL +G  +H  
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           + ES +     + N LVDMY +CG +  A  L    ++  +    WT+++SG V+S + D
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSM--ASWTSVISGLVRSGQVD 244

Query: 279 EARRLFDEMVERNLISWTLMISGMLN----QDA--EFKY-----------------KSCA 315
            AR LFD M ER+ I+WT MI G +     +DA   F+Y                  +CA
Sbjct: 245 RARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACA 304

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            +GAL  G W  +Y+ +  I +D               +IE A D+F ++  ++ + WT+
Sbjct: 305 QLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTA 364

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I   A+ G  ++AID+F  M      PD+VTF+ +L+AC+H GLVD+G +F    +  Y
Sbjct: 365 IILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAY 424

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           NI P + HYGC++D+LGRAG L+E+ + I  MP+ P+ +IW +LL +CR + N ++ E A
Sbjct: 425 NISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELA 484

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L E DP N  A++LL+N+YAK+ R  D+ RIR  + + G+KK+ G S+IE  G +H+
Sbjct: 485 AERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHE 544

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVA 584
           F + D  +P ++EIY  L  +   L+  G                 Q+    H E+LAV 
Sbjct: 545 FVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVT 604

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F L+++     IRIV NLR+C DCH+ +K+ S++Y RE+++RD  RFH F+ G CSC+DY
Sbjct: 605 FALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDY 664

Query: 645 W 645
           W
Sbjct: 665 W 665



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 25/231 (10%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++H  ++ + ++ D ++   + +     GD+  A  +        +  W S+I       
Sbjct: 182 QVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISG----- 236

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                             L + G++     LFD +P RD I+W  MI  Y  +G +R+ L
Sbjct: 237 ------------------LVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDAL 278

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
                M    V  DE TMVS+++A  +L  LE G+   +++    +K+   + N L+DMY
Sbjct: 279 ETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMY 338

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
            KCG I  A  +    ++   D   WT ++ G   +   +EA  +F  M+ 
Sbjct: 339 SKCGSIERALDVF--KDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLR 387



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG ++    +F  + NRD  +W  +I      G   E + +  +M     +PDEVT
Sbjct: 337 MYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVT 396

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            V +++A T    ++ G+   L + E+   IS ++++Y  L+D+  + GK+ EA   + +
Sbjct: 397 FVGVLTACTHAGLVDKGREFFLSMTEA-YNISPTVVHYGCLIDVLGRAGKLKEALDTIDK 455

Query: 254 YEIDEVDVVLWTTLVSGYVKSN 275
             +     +  T L S  V  N
Sbjct: 456 MPMKPNSTIWGTLLASCRVYGN 477


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 223/676 (32%), Positives = 351/676 (51%), Gaps = 101/676 (14%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           +   ++++  LI + L +   +  +     +  GD+ YA +  R+  EP+I +WN+II+ 
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIK- 73

Query: 114 QLINGYPQEVFA---IYLYL-----------VTRTVLLNKCG------------------ 141
               GY Q+      I +Y+            T   +L  CG                  
Sbjct: 74  ----GYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKY 129

Query: 142 -----------------KLKEVCQ---LFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                            K  ++     +FDKL +R V+SW ++IS Y   G   E L + 
Sbjct: 130 GFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVF 189

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            +M    V PD + +VS+++A T + DL  GK++H  + +  ++    ++  L  MY K 
Sbjct: 190 KEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKR 249

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMIS 300
           G +  A+    R E  + +++LW  ++SGY  +   +EA +LF EM+ +N+ +    M S
Sbjct: 250 GLVEVARFFFNRME--KPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS 307

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYD 345
            +L         + A +G+L    W+  YI K++   D               +I LA  
Sbjct: 308 AVL---------ASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARC 358

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  +++K+V LW+ +I  Y + GH Q+AI L+ EM++ G  P+  TFI LL+AC + GL
Sbjct: 359 VFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGL 418

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           V EG++        + I+P  QHY C+VDLLGRAG+L ++ +FI SMPI P VS+W +LL
Sbjct: 419 VKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALL 477

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            AC+ H+ V+L E A + L   DP N G +V L+N+YA A     ++ +R+ +   GL K
Sbjct: 478 SACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNK 537

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------------- 569
            LG+S IE  G +  F  GD  +P S+EI+  L+ +E  L+  G                
Sbjct: 538 DLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEE 597

Query: 570 LQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           ++ET   H ERLAVA+G+IST+  TT+RI  NLR C +CHS +K+ S++ +REI+IRD  
Sbjct: 598 IEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAK 657

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSC D+W
Sbjct: 658 RFHHFKDGVCSCGDFW 673


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 209/670 (31%), Positives = 346/670 (51%), Gaps = 91/670 (13%)

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           + ++IH+ L+   L     + T++       GD+ +A+Q+      P+I  WN+II    
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 116 INGYPQEVFAIYLYLVTRTV---------------------------------------- 135
            N + Q+   +Y  +    V                                        
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 136 -------LLNKCGKLKEVCQLFD--KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                  L  KC +L     +F+   LP R ++SW  ++S Y   G   E L + S M  
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRK 215

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
             V PD V +VS+++A T L+DL+ G+++H  + +  ++I   LL  L  MY KCG++  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+ L  +  +   +++LW  ++SGY K+    EA  +F EM+ +++   T+ I+  ++  
Sbjct: 276 AKILFDK--MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS-- 331

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +CA +G+L     ++ Y+ ++    D               ++E A  +F    
Sbjct: 332 ------ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +++V +W+++I  Y + G A++AI L+  ME  G  P+ VTF+ LL AC+H G+V EG+ 
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           F +  +  + I P+ QHY C++DLLGRAGHL+++   I  MP+ P V++W +LL AC+ H
Sbjct: 446 FFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           ++V+L E+A + L   DP N G +V L+N+YA A   D ++ +R+++++ GL K +G S 
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL 575
           +E  G +  F  GD  +P  EEI   +  IE  L++ G                 +ET  
Sbjct: 565 VEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLC 624

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H ER+A+A+GLIST + T +RI  NLR C +CH+  K+ S++ +REIV+RD  RFH F+
Sbjct: 625 SHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFK 684

Query: 636 GGQCSCRDYW 645
            G CSC DYW
Sbjct: 685 DGVCSCGDYW 694


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 206/657 (31%), Positives = 338/657 (51%), Gaps = 91/657 (13%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV--FTGDLGYAQQIIRQGDEPEIKI 106
           +S +S+    ++H  ++ +   +D  +S  + +        +  +A ++      P + I
Sbjct: 41  KSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 107 WNSIIENQLINGYPQEVF-AIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           WN +I+  L N    ++F AIY Y           G++     + D  PN+   ++ T+ 
Sbjct: 101 WNIVIKGCLEN---NKLFKAIYFY-----------GRM-----VIDARPNK--FTYPTLF 139

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
              +     +EG  +   +   G+  D     + I        LE  + +    E   + 
Sbjct: 140 KACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVV- 198

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
                 N ++D Y KCG +  A+ L  +  +  +    W  +++G  K     +AR+LFD
Sbjct: 199 ----CWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGS--WNVMINGLAKGGNLGDARKLFD 252

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYK--------------------------SCASIGA 319
           EM ER+ ISW+ M+ G ++     +YK                          +C++IGA
Sbjct: 253 EMSERDEISWSSMVDGYISAG---RYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309

Query: 320 LYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAA 364
           +  G WVH Y+K+N I +D +               ++ +++F E+ E+ ++ W ++I  
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            A+ G A+ A++LF +++E   KP+ +T + +L+AC+H G VD+G          Y + P
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDP 429

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +++HYGCMVDLLGR+G   E+ + I SMP+ P+ ++W +LL ACR H N  LAE   K L
Sbjct: 430 ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL 489

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P N G +VLL+NIYAK GR DD+S+IR  ++D G+K   G S+++  G VH+F  G
Sbjct: 490 LELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMG 549

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLI 588
           D  +P  +EIY  L  I+  LQ  G                +ET++  H E+LA+AFGLI
Sbjct: 550 DGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLI 609

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +T     I IV NLR+C DCHS  K+ SQ+++REI++RD  R+H F+ G CSC+D+W
Sbjct: 610 NTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 219/683 (32%), Positives = 342/683 (50%), Gaps = 98/683 (14%)

Query: 47  VERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
           V R+C ++D+  ++H  ++      D  I+     F    G +  A  +       +I  
Sbjct: 148 VIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGT 207

Query: 107 WNSIIENQLINGYPQEVFAIY---------LYLVTRTVLLNKC----------------- 140
           WN++I    +NG   E   ++         +  VT + LL  C                 
Sbjct: 208 WNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAI 267

Query: 141 ---------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                                G+L+    +F+++  RD++SWN++++ +         LG
Sbjct: 268 KLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALG 327

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG-SLLNYLVDMY 238
           + +KM + GV PD +T+VSL S   +L +    +++H F+      +   +L N ++DMY
Sbjct: 328 VYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMY 387

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-----VERNLI 293
            K G I  A+K+     +   DV+ W +L++GY ++   +EA  ++  M        N  
Sbjct: 388 AKLGFIDSARKVFEGLPVK--DVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQG 445

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--------------- 338
           +W  +++              + +GAL  G+  H  + KN +  D               
Sbjct: 446 TWVSILTAH------------SQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCG 493

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +  A  LF E+  ++   W ++I+ + + G+  KA+ LF EM+  G KPD +TF++LLS
Sbjct: 494 KLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLS 553

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACSH GLVDEG          Y I+P ++HYGCMVDL GRAGHLE++ NF+ +MP+ PDV
Sbjct: 554 ACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDV 613

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
           S+W +LL ACR H+NV+L      HL + +  N G +VLL+NIYAK G  + +  +R   
Sbjct: 614 SVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLA 673

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------L 570
           RD GLKK  G+S IE    +  F +G+  +P  EEIY  L  +   ++  G        L
Sbjct: 674 RDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVL 733

Query: 571 QETS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
           Q+            H ERLA+AFG+IST  KTT++I  NLR+CGDCH+  K  S++  RE
Sbjct: 734 QDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITERE 793

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           I++RD+ RFH F+ G CSC DYW
Sbjct: 794 IIVRDSNRFHHFKDGVCSCGDYW 816



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 161/374 (43%), Gaps = 48/374 (12%)

Query: 115 LINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
           +++G  Q +F +   L+ R   L   G +      FD++  +DV +WN+MIS Y  +G +
Sbjct: 67  VVSGKTQSIF-LSAKLINRYAFL---GDIPHARLTFDQIQTKDVYTWNSMISAYARIGHF 122

Query: 175 REGLGLLSK-MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY 233
              +   ++ +    +  D  T   +I A   L D   G+ +H  + +   +    +   
Sbjct: 123 HAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVYIAAS 179

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
            +  Y + G +  A  L     I   D+  W  ++SG+  + +  EA  +FDEM  +++ 
Sbjct: 180 FIHFYSRFGFVSLACNLFDNMMIR--DIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVS 237

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--------------- 338
             ++ IS +L          C  +  +  G+ +HVY  K  +  D               
Sbjct: 238 MDSVTISSLL--------PICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFG 289

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +  A  +F+++  +++  W S++AA+        A+ ++ +M   G  PD +T ++L S
Sbjct: 290 ELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLAS 349

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY-------GCMVDLLGRAGHLEESANFITS 451
             +  G      +FLS +S ++    +   +         ++D+  + G ++ +      
Sbjct: 350 VAAELG------NFLSSRS-IHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEG 402

Query: 452 MPIPPDVSIWSSLL 465
           +P+  DV  W+SL+
Sbjct: 403 LPV-KDVISWNSLI 415



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 20/139 (14%)

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGL 405
           F +I  K+VY W S+I+AYA  GH   A+D F E   T   + D  TF  ++ AC   G 
Sbjct: 98  FDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GN 154

Query: 406 VDEGYDF------LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           +D+G         L  +  VY I     H+        R G +  + N   +M I  D+ 
Sbjct: 155 LDDGRKVHCLVLKLGFECDVY-IAASFIHF------YSRFGFVSLACNLFDNMMI-RDIG 206

Query: 460 IWSSLLRACRCHQNVKLAE 478
            W++++     + N K+AE
Sbjct: 207 TWNAMISG--FYLNGKVAE 223


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 221/674 (32%), Positives = 349/674 (51%), Gaps = 101/674 (14%)

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
             ++++  LI + L +   +  +     +  GD+ YA +  R+  EP+I +WN+II+   
Sbjct: 2   HLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIK--- 58

Query: 116 INGYPQ--------------EVFAIYLYLVTRTVLLNKCG-------------------- 141
             GY Q              ++  ++    T   +L  CG                    
Sbjct: 59  --GYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGF 116

Query: 142 ---------------KLKEVCQ---LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
                          K  ++     +FDKL +R V+SW ++IS Y   G   E L +  +
Sbjct: 117 GSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKE 176

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M    V PD + +VS+++A T + DL  GK++H  + +  ++    ++  L  MY K G 
Sbjct: 177 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL 236

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMISGM 302
           +  A+    R E  + +++LW  ++SGY  +   +EA +LF EM+ +N+ +    M S +
Sbjct: 237 VEVARFFFNRME--KPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAV 294

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLF 347
           L         + A +G+L    W+  YI K++   D               +I LA  +F
Sbjct: 295 L---------ASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVF 345

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             +++K+V LW+ +I  Y + GH Q+AI L+ EM++ G  P+  TFI LL+AC + GLV 
Sbjct: 346 DRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 405

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG++        + I+P  QHY C+VDLLGRAG+L ++ +FI SMPI P VS+W +LL A
Sbjct: 406 EGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSA 464

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           C+ H+ V+L E A + L   DP N G +V L+N+YA A     ++ +R+ +   GL K L
Sbjct: 465 CKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDL 524

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQ 571
           G+S IE  G +  F  GD  +P S+EI+  L+ +E  L+  G                ++
Sbjct: 525 GHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIE 584

Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
           ET   H ERLAVA+G+IST+  TT+RI  NLR C +CHS +K+ S++ +REI+IRD  RF
Sbjct: 585 ETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRF 644

Query: 632 HRFQGGQCSCRDYW 645
           H F+ G CSC D+W
Sbjct: 645 HHFKDGVCSCGDFW 658


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 205/585 (35%), Positives = 317/585 (54%), Gaps = 91/585 (15%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD +   +V  WN MI          + + L  +M      P++ T  +++ A +   
Sbjct: 93  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSG 152

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            +  G  +H  L +  +   G +L+  + MY   G++ EA+++L   +  EVD V W  +
Sbjct: 153 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD-KGGEVDAVCWNAM 211

Query: 268 VSGYVKSNERDEARRLF--------------------------------DEMVERNLISW 295
           + GY++  E + AR LF                                DEM ER+ ISW
Sbjct: 212 IDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISW 271

Query: 296 TLMISGMLNQDAEFK-----------------------YKSCASIGALYHGIWVHVYIKK 332
           + MI G + +    +                         +CA++GAL  G W+H Y K+
Sbjct: 272 SAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 331

Query: 333 NQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           N I +D                I+LA+++F ++S K V  W ++I   AM G A+ AIDL
Sbjct: 332 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 391

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M+     P+++TF+ +L+AC+HGGLV +G    +   + Y ++P+++HYGC+VDLLG
Sbjct: 392 FSKMD---IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 448

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAG L E+   ++S+P  P  ++W +LL ACR H NV+L E   K L E +P N G + L
Sbjct: 449 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 508

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG-GFVHKFTSGDIFNPHSEEIYL 556
           L+NIYAKAGR +++  +R  +++ G+K   G S+I+ G G VHKF  GD  +P  ++IY 
Sbjct: 509 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQ 568

Query: 557 MLNEIEMTLQQQGLQ---------------ETSL-QHRERLAVAFGLISTSEKTTIRIVN 600
           ML++++  LQ +G +               ET++ QH E+LA+ FGLI+TS  TTIRIV 
Sbjct: 569 MLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVK 628

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCHS  K+ SQVYNREI++RD  R+H F+ G CSC+D+W
Sbjct: 629 NLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 295/542 (54%), Gaps = 47/542 (8%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           +KCG L++  ++FD +  ++V+SW  MI      G +RE + L   +   G+ PD   +V
Sbjct: 150 SKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIV 209

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            ++ A  +L DLE G+ +   + E  +  +  +   LVDMY KCG + EA     R+  D
Sbjct: 210 RVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEA-----RFVFD 264

Query: 258 ---EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
              E D+V W+ ++ GY  +    EA  LF EM + N+      + G L+        SC
Sbjct: 265 GMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALS--------SC 316

Query: 315 ASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWT 359
           AS+GAL  G W    +   +                   ++E A  ++  + EK+  ++ 
Sbjct: 317 ASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFN 376

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           +VI+  AM G    A  +F +M + G  P++ TF+ LL  C+H GLVD+G  + +  S  
Sbjct: 377 AVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHD 436

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           +++ P ++HYGCMVDLL RAG L+E+ N I  MP+  +V +W SLL  CR H+  +LAEH
Sbjct: 437 FSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEH 496

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
             K L E +P N G +VLL+NIY+ + R D+  +IR  + + G++K  GYS +E  G VH
Sbjct: 497 VLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVH 556

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERLAV 583
           +F  GD  +P S++IY  L  +   L++ G   T+                  H E+LAV
Sbjct: 557 EFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAV 616

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AF LIST  K  IR+V NLR+CGDCH  +K  S+V  REIVIRDN RFH F  G CSCRD
Sbjct: 617 AFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRD 676

Query: 644 YW 645
           YW
Sbjct: 677 YW 678



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 168/388 (43%), Gaps = 47/388 (12%)

Query: 149 LFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +F K P N +   +NTMI    S   +   + L + M    + PD  T   ++ A  +L 
Sbjct: 59  VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN 118

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
              +G  +H  + ++       +   +V  Y KCG + +A K+     +   +VV WT +
Sbjct: 119 LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVK--NVVSWTGM 176

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV- 326
           + G ++  +  EA  LF  ++E  L     +I  +L        ++CA +G L  G W+ 
Sbjct: 177 ICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVL--------RACARLGDLESGRWID 228

Query: 327 ----------HVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
                     +V++  + + +     ++E A  +F  + EK++  W+++I  YA  G  +
Sbjct: 229 RCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPR 288

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY---------DFLSKKSRVYNIK 423
           +AI+LF EM +   +PD    +  LS+C+  G ++ G          +FLS         
Sbjct: 289 EAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLS--------N 340

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P +     ++D   + G +EE+   +  M    D  ++++++     +  V  A   F  
Sbjct: 341 PVLG--TSLIDFYAKCGSMEEALG-VYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQ 397

Query: 484 LTETD-PLNDGAHVLLANIYAKAGRLDD 510
           + +   P N+   V L      AG +DD
Sbjct: 398 MGKFGIPPNEHTFVGLLCGCTHAGLVDD 425



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 128 LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +++ T  V +  KCG ++E   +FD +  +D++ W+ MI  Y S G+ RE + L  +M  
Sbjct: 240 VFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRK 299

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGK------NLHLFLEESTMKISGSLLNYLVDMYFK 240
             V PD   MV  +S+   L  LE+G       N   FL    +  S      L+D Y K
Sbjct: 300 VNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTS------LIDFYAK 353

Query: 241 CGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           CG + EA   LG Y+ + E D V++  ++SG     +   A  +F +M
Sbjct: 354 CGSMEEA---LGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQM 398


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 205/657 (31%), Positives = 339/657 (51%), Gaps = 91/657 (13%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV--FTGDLGYAQQIIRQGDEPEIKI 106
           +S +S+    ++H+ ++ +   +D  +S  + +        +  +A ++      P + I
Sbjct: 41  KSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 107 WNSIIENQLINGYPQEVF-AIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           WN +I+  L N    ++F AIY Y           G++     + D  PN+   ++ T+ 
Sbjct: 101 WNIVIKGCLEN---NKLFKAIYFY-----------GRM-----VIDARPNK--FTYPTLF 139

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
              +     +EG  +   +   G+  D     + I        LE  + +    E   + 
Sbjct: 140 KACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVV- 198

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
                 N ++D Y KCG +  A+ L  +  +  +    W  +++G  K     +AR+LFD
Sbjct: 199 ----CWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGS--WNVMINGLAKGGNLGDARKLFD 252

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYK--------------------------SCASIGA 319
           EM ER+ ISW+ M+ G ++     +YK                          +C++IGA
Sbjct: 253 EMSERDEISWSSMVDGYISAG---RYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309

Query: 320 LYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAA 364
           +  G WVH Y+K+N I +D +               ++ +++F E+ E+ ++ W ++I  
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            A+ G A+ A++LF +++E   KP+ +T + +L+AC+H G VD+G          Y + P
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDP 429

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +++HYGCMVDLLGR+G   E+ + I SMP+ P+ ++W +LL ACR H N  LAE   K L
Sbjct: 430 ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL 489

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P N G +VLL+NIYAK GR DD+S+IR  +++ G+K   G S+++  G VH+F  G
Sbjct: 490 LELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMG 549

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLI 588
           D  +P  +EIY  L  I+  LQ  G                +ET++  H E+LA+AFGLI
Sbjct: 550 DGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLI 609

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +T     I IV NLR+C DCHS  K+ SQ+++REI++RD  R+H F+ G CSC+D+W
Sbjct: 610 NTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 304/534 (56%), Gaps = 41/534 (7%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           +  V ++F+ +P +DV+S+NT+I+ Y   GMY + L ++ +MG   + PD  T+ S++  
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
            ++  D+  GK +H ++    +     + + LVDMY K  +I +++++  R      D +
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR--DGI 309

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            W +LV+GYV++   +EA RLF +MV   +    +  S ++         +CA +  L+ 
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVI--------PACAHLATLHL 361

Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H Y+ +     +               NI+ A  +F  ++  +   WT++I  +A+
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            GH  +A+ LF EM+  G KP+QV F+A+L+ACSH GLVDE + + +  ++VY +  +++
Sbjct: 422 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELE 481

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HY  + DLLGRAG LEE+ NFI+ M + P  S+WS+LL +C  H+N++LAE   + +   
Sbjct: 482 HYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTV 541

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           D  N GA+VL+ N+YA  GR  +M+++R+++R  GL+K+   S IE     H F SGD  
Sbjct: 542 DSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRS 601

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTS 591
           +P  ++I   L  +   ++++G                 +E    H ERLAVAFG+I+T 
Sbjct: 602 HPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTE 661

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             TTIR+  N+RIC DCH  +K  S++  REI++RDN RFH F  G CSC DYW
Sbjct: 662 PGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 188/441 (42%), Gaps = 84/441 (19%)

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           F  L +  V++W ++I C+T   ++ + L    +M A G  PD     S++ + T + DL
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG------------------------ 245
             G+++H F+    M       N L++MY K   +G                        
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 246 EAQKLLGRYEIDEV----------DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           +A+  +  + ID V          DVV + T+++GY +S   ++A R+  EM   +L   
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 296 TLMISGMLNQDAEF----KYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLF 347
           +  +S +L   +E+    K K       +  GI   VYI  + + +      IE +  +F
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGY-VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS------ 401
           S +  ++   W S++A Y   G   +A+ LF +M     KP  V F +++ AC+      
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360

Query: 402 -----HGGLVDEGYD---FLSKK-----SRVYNIKPKMQHYGCM---------VDLLGRA 439
                HG ++  G+    F++       S+  NIK   + +  M           ++G A
Sbjct: 361 LGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHA 420

Query: 440 --GHLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHA---FKHLTETDPLN 491
             GH  E+ +    M    + P+   + ++L AC    +V L + A   F  +T+   LN
Sbjct: 421 LHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTAC---SHVGLVDEAWGYFNSMTKVYGLN 477

Query: 492 D--GAHVLLANIYAKAGRLDD 510
                +  +A++  +AG+L++
Sbjct: 478 QELEHYAAVADLLGRAGKLEE 498



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG +K   ++FD++   D +SW  +I  +   G   E + L  +M  +GV P++V 
Sbjct: 387 MYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVA 446

Query: 196 MVSLISA--RTKLRDLEMGKNLHLFLEESTMKISG---SLLNY--LVDMYFKCGKIGEAQ 248
            V++++A     L D   G         S  K+ G    L +Y  + D+  + GK+ EA 
Sbjct: 447 FVAVLTACSHVGLVDEAWG------YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAY 500

Query: 249 KLLGRYEIDEVDVVLWTTLVS 269
             + +  ++    V W+TL+S
Sbjct: 501 NFISKMCVEPTGSV-WSTLLS 520


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 202/584 (34%), Positives = 315/584 (53%), Gaps = 51/584 (8%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           W   +  Q+I   P     I  Y+ +  V L  KCG  KE   +F+ L +R+ ++W  +I
Sbjct: 288 WGKQLHAQVIRNLP----CIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLI 343

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           + +   G + E + L ++M AE ++ D+  + +LIS      DL +G+ LH    +S   
Sbjct: 344 AGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 403

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  + N L+ MY KC  +  A+ +  R+ ++E D+V WT++++ + +     +AR  FD
Sbjct: 404 QAVVVSNSLISMYAKCDNLQSAESIF-RF-MNEKDIVSWTSMITAHSQVGNIAKAREFFD 461

Query: 286 EMVERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGA-- 319
            M  +N+I+W  M+   +   AE                          +K CA +GA  
Sbjct: 462 GMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANK 521

Query: 320 ---------LYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                    +  G+ +   +    I++      I  A  +F  ++ K++  W ++I  Y+
Sbjct: 522 LGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 581

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++AI++F ++ + G KPD ++++A+LS CSH GLV EG  +     RV+NI P +
Sbjct: 582 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGL 641

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+ CMVDLLGRAGHL E+ + I  MP+ P   +W +LL AC+ H N +LAE A KH+ E
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D  + G+++L+A IYA AG+ DD ++IR  +RD G+KK  GYS +E    VH F + D+
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDV 761

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQETS-----LQHRERLAVAFGLISTSEKTTIRIVNN 601
            +P    I   L+E+   + + G   T      + H E+LAVAFGL+S      I I+ N
Sbjct: 762 SHPQVIAIRKKLDELMEKIARLGYVRTDSPRSEIHHSEKLAVAFGLMSLPAWMPIHIMKN 821

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LRICGDCH+ +K+ S V  RE VIRD  RFH F GG CSC DYW
Sbjct: 822 LRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 168/359 (46%), Gaps = 45/359 (12%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131
           D  ++  + +  V  G +  A ++  +  EP I        N ++ GY      +  Y V
Sbjct: 172 DSDVAAALVDMFVRCGTVDLASRLFVRIKEPTI-----FCRNSMLVGY------VKTYGV 220

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
              +            +LFD +P RDV+SWN M+S  +  G  RE L ++  M ++GV  
Sbjct: 221 DHAL------------ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRL 268

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T  S ++A  +L  L  GK LH  +  +   I   + + LV++Y KCG   EA+ + 
Sbjct: 269 DSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVF 328

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA 307
               + + + V WT L++G+++     E+  LF++M    +  +  +   +ISG  ++  
Sbjct: 329 N--SLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
               +   S+  L  G    V +  + IS+    DN++ A  +F  ++EK++  WTS+I 
Sbjct: 387 LCLGRQLHSL-CLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMIT 445

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           A++  G+  KA + F  M    +  + +T+ A+L A    G  ++G        R+YN+
Sbjct: 446 AHSQVGNIAKAREFFDGM----STKNVITWNAMLGAYIQHGAEEDGL-------RMYNV 493



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 141/313 (45%), Gaps = 44/313 (14%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           ++T  V+LN   K G+L +  +LF ++P RDV SWNT++S Y     Y   L     M  
Sbjct: 71  VITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHR 130

Query: 187 EG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            G  SP+  T    + +   L +  +   L   +++   +    +   LVDM+ +CG + 
Sbjct: 131 SGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVD 190

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM--- 302
            A +L  R  I E  +    +++ GYVK+   D A  LFD M ER+++SW +M+S +   
Sbjct: 191 LASRLFVR--IKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 248

Query: 303 ------LNQDAEFKYK--------------SCASIGALYHGIWVHVYIKKNQISIDN--- 339
                 L+   + + K              +CA + +L  G  +H  + +N   ID    
Sbjct: 249 GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA 308

Query: 340 ---IEL---------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
              +EL         A  +F+ + ++N   WT +IA +   G   ++++LF +M      
Sbjct: 309 SALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMT 368

Query: 388 PDQVTFIALLSAC 400
            DQ     L+S C
Sbjct: 369 LDQFALATLISGC 381


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 204/568 (35%), Positives = 312/568 (54%), Gaps = 70/568 (12%)

Query: 141 GKLKEVCQLFD---KLPNRDVISWNTMISCYTSMGMYREGLGLLSK--MGAEGVSPDEVT 195
           G L+    +F+     PN  + ++N ++  ++    +   +   +   +     +PDE T
Sbjct: 72  GNLRHSVLIFNHFLSFPN--IFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYT 129

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++ A   L  +  G+ +H F+ +   + +  + N LVD+YFK G    AQKL    E
Sbjct: 130 FTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFD--E 187

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY---- 311
           +   DVV W TL+SGY  S   D+AR +FD M+E+NL+SW+ MISG    +   KY    
Sbjct: 188 MVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNE---KYADAI 244

Query: 312 -----------------------KSCASIGALYHGIWVHVYIKKNQISID---------- 338
                                   +CA +GAL  G W+H +I++N+I +           
Sbjct: 245 ELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADM 304

Query: 339 -----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                 +  A  +F E+ E++V  W+ +I   AM G+A +A + F EM E G +P+ ++F
Sbjct: 305 YAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISF 364

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           + LL+AC+H GLVD+G ++     +VY I PK++HYGC+VDLL RAG L+++ + I SMP
Sbjct: 365 MGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMP 424

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           + P+V +W +LL  CR +++ +  E     + E D  + G+ V LAN+YA  GRLDD + 
Sbjct: 425 MQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAAS 484

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--- 570
            R+++RD    K  G S IE    V++F  GD  +P S  IY M+ E++  ++  G    
Sbjct: 485 CRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPK 544

Query: 571 ------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
                       +E +L  H E+LA+AFGLI+TSE TTIRIV NLR+C DCH  +K+ S+
Sbjct: 545 TDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISK 604

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  REIV+RD  RFH F+ G+CSC DYW
Sbjct: 605 IVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 8/146 (5%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + E   +F ++  RDVISW+ +I      G   E     ++M  +G+ P++++ + 
Sbjct: 307 KCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMG 366

Query: 199 LISARTKLRDLEMGKNLHLF-LEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYE 255
           L++A T    ++ G  L  F +      I+  + +Y  +VD+  + G++ +A+ L+    
Sbjct: 367 LLTACTHAGLVDKG--LEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMP 424

Query: 256 IDEVDVVLWTTLVSG--YVKSNERDE 279
           + + +V++W  L+ G    K  ER E
Sbjct: 425 M-QPNVIVWGALLGGCRIYKDAERGE 449


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 210/646 (32%), Positives = 343/646 (53%), Gaps = 83/646 (12%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           +++HS ++   L  +  +S  +       GD   A+ +  +    +I  WN++I      
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI------ 219

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
                  A+++          + G++      F+++  RD+++WN+MIS +   G     
Sbjct: 220 -------ALHM----------QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRA 262

Query: 178 LGLLSKMGAEGV-SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
           L + SKM  + + SPD  T+ S++SA   L  L +GK +H  +  +   ISG +LN L+ 
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALIS 322

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY +CG +  A++L+ +    ++ +  +T L+ GY+K  + ++A+ +F  + +R++++WT
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382

Query: 297 LMISGMLNQ----DAEFKYKSCASIG-------------------ALYHGIWVH-VYIKK 332
            MI G        +A   ++S    G                   +L HG  +H   +K 
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS 442

Query: 333 NQI-----------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            +I                 +I +   A+DL     E++   WTS+I A A  GHA++A+
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSASRAFDLIR--CERDTVSWTSMIIALAQHGHAEEAL 500

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           +LF  M   G +PD +T++ + SAC+H GLV++G  +      V  I P + HY CMVDL
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL 560

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
            GRAG L+E+  FI  MPI PDV  W SLL ACR H+N+ L + A + L   +P N GA+
Sbjct: 561 FGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAY 620

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
             LAN+Y+  G+ ++ ++IR  ++D  +KK+ G+S IE    VH F   D  +P   EIY
Sbjct: 621 SALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIY 680

Query: 556 LMLNEIEMTLQQQG---------------LQETSLQHR-ERLAVAFGLISTSEKTTIRIV 599
           + + +I   +++ G               ++E  L+H  E+LA+AFGLIST +KTT+RI+
Sbjct: 681 MTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIM 740

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C DCH+ +K  S++  REI++RD  RFH F+ G CSCRDYW
Sbjct: 741 KNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/542 (20%), Positives = 218/542 (40%), Gaps = 119/542 (21%)

Query: 85  FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL-------- 136
           FT  L + + +I+ G    + + N+++      GY      ++  +  RT          
Sbjct: 31  FTAQLVHCR-VIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSA 89

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
            +K G +   C+ FD+LP RD +SW TMI  Y ++G Y + + ++  M  EG+ P + T+
Sbjct: 90  YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTL 149

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            +++++    R +E GK +H F+ +  ++ + S+ N L++MY KCG    A+ +  R  +
Sbjct: 150 TNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVV 209

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------ 310
              D+  W  +++ +++  + D A   F++M ER++++W  MISG   +  + +      
Sbjct: 210 R--DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFS 267

Query: 311 ------------------YKSCASIGALYHGIWVHVYIKKNQISIDNI------------ 340
                               +CA++  L  G  +H +I      I  I            
Sbjct: 268 KMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC 327

Query: 341 ----------------ELAYDLFSEI-----------SEKNVYL---------WTSVIAA 364
                           +L  + F+ +             KN+++         WT++I  
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVG 387

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDF- 412
           Y   G   +AI+LF  M   G +P+  T  A+LS  S           HG  V  G  + 
Sbjct: 388 YEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS 447

Query: 413 ----------------LSKKSRVYNI---KPKMQHYGCMVDLLGRAGHLEESANFITSM- 452
                           ++  SR +++   +     +  M+  L + GH EE+     +M 
Sbjct: 448 VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507

Query: 453 --PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYAKAGRL 508
              + PD   +  +  AC     V      F  + + D +      +  + +++ +AG L
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567

Query: 509 DD 510
            +
Sbjct: 568 QE 569


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/550 (34%), Positives = 309/550 (56%), Gaps = 44/550 (8%)

Query: 130 LVTRTVLLNKCGKL---KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L T   L+N   KL     V ++F+ +P +DV+S+NT+I+ Y   GMY + L ++ +MG 
Sbjct: 140 LYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGT 199

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
             + PD  T+ S++   ++  D+  GK +H ++    +     + + LVDMY K  +I +
Sbjct: 200 SDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED 259

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           ++++     +   D + W +LV+GYV++   +EA RLF +MV   +    +  S ++   
Sbjct: 260 SERVFS--HLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVI--- 314

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +CA +  L+ G  +H Y+ +     +               NI+ A  +F  ++
Sbjct: 315 -----PACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMN 369

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
             +   WT++I  +A+ GH  +A+ LF EM+  G KP+QV F+A+L+ACSH GLVDE + 
Sbjct: 370 LHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG 429

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           + +  ++VY +  +++HY  + DLLGRAG LEE+ +FI+ M + P  S+WS+LL +C  H
Sbjct: 430 YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH 489

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           +N++LAE   + +   D  N GA+VL+ N+YA  GR  +M+++R+++R  GL+K+   S 
Sbjct: 490 KNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSW 549

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL 575
           IE     H F SGD  +P  + I   L  +   ++++G                 +E   
Sbjct: 550 IEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLF 609

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H ERLAVAFG+I+T   TTIR+  N+RIC DCH  +K  S++  REI++RDN RFH F 
Sbjct: 610 GHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFN 669

Query: 636 GGQCSCRDYW 645
            G CSC DYW
Sbjct: 670 RGSCSCGDYW 679



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 156/342 (45%), Gaps = 23/342 (6%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L E   +F  L +  V++W ++I C+T   ++   L    +M A G  PD     S++ +
Sbjct: 55  LHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKS 114

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI-DEVDV 261
            T + DL  G+++H F+    M       N L++MY K   I   +K+   +E+    DV
Sbjct: 115 CTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKV---FELMPRKDV 171

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF----KYKSCASI 317
           V + T+++GY +S   ++A R+  EM   +L      +S +L   +E+    K K     
Sbjct: 172 VSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGY 231

Query: 318 GALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
             +  GI   VYI  + + +      IE +  +FS +  ++   W S++A Y   G   +
Sbjct: 232 -VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNE 290

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH----Y 429
           A+ LF +M     +P  V F +++ AC+H   +      L K+   Y ++          
Sbjct: 291 ALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLH-----LGKQLHGYVLRGGFGRNIFIA 345

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
             +VD+  + G+++ +      M +  +VS W++++     H
Sbjct: 346 SALVDMYSKCGNIQAARKIFDRMNLHDEVS-WTAIIMGHALH 386


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 305/559 (54%), Gaps = 63/559 (11%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++F +    ++  +NTMI        ++E + +   M  EG+SPD  T   L+ A  +L 
Sbjct: 63  RIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLL 122

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D ++G  LH  + ++  +    +   LV +Y KCG I  A K+    +I E +V  WT +
Sbjct: 123 DSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFD--DIPEKNVAAWTAI 180

Query: 268 VSGYVKSNERDEA----RR---LFDEMVERNLISWTLMISGMLNQ-------DAEFKYK- 312
           +SGY+   +  EA    RR   +FD M+E++++SW+ MI G  +        D  FK   
Sbjct: 181 ISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLN 240

Query: 313 ---------------SCASIGALYHGIWVHVYIKKNQI---------------SIDNIEL 342
                          +CA +GAL  G W    + +N+                    ++ 
Sbjct: 241 EGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDS 300

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A+++F  + +K++ +W + I+  AM+GH + A  LF +ME++G +PD  TF+ LL AC+H
Sbjct: 301 AWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTH 360

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GLVDEG  + +   RV+ + P+++HYGCMVDLLGRAG L+E+   + SMP+  +  +W 
Sbjct: 361 AGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWG 420

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL  CR H++ +L E   K L   +P N G +VLL+NIY+ + + +D ++IR  + + G
Sbjct: 421 ALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERG 480

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ------ 576
           +KK  GYS IE  G VH+F  GD  +P SE+IY  L E+   L+  G   T+        
Sbjct: 481 IKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIE 540

Query: 577 ----------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                     H E+LA+AFGLIST+    IR+V NLR+CGDCH  +K  S+   REI++R
Sbjct: 541 EEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVR 600

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           DN RFH F  G CSC+DYW
Sbjct: 601 DNNRFHCFNDGSCSCKDYW 619



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 21/252 (8%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P S     + ++C+ + + +   ++H  ++      D  ++T +       G +  A ++
Sbjct: 106 PDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKV 165

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
                E  +  W +II   +  G  +E   ++                +  C +FD +  
Sbjct: 166 FDDIPEKNVAAWTAIISGYIGVGKCREAIDMF----------------RRACSVFDGMLE 209

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           +D++SW++MI  Y S G+ +E L L  KM  EG  PD   MV ++ A  +L  LE+G   
Sbjct: 210 KDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWA 269

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
              ++ +    +  L   L+DMY KCG++  A ++     + + D+V+W   +SG   S 
Sbjct: 270 SNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVF--RGMRKKDIVVWNAAISGLAMSG 327

Query: 276 ERDEARRLFDEM 287
               A  LF +M
Sbjct: 328 HVKAAFGLFGQM 339



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG++    ++F  +  +D++ WN  IS     G  +   GL  +M   G+ PD  T V 
Sbjct: 294 KCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVG 353

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           L+ A T    ++ G+  +    E    ++  + +Y  +VD+  + G + EA +L+    +
Sbjct: 354 LLCACTHAGLVDEGRQ-YFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPM 412

Query: 257 DEVDVVLWTTLVSG 270
            E + ++W  L+ G
Sbjct: 413 -EANAIVWGALLGG 425



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 39/194 (20%)

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----------NQI-----SIDNIEL 342
           M S +LN+ A  K +      +L H   VH  + +          N++     +  N   
Sbjct: 1   MSSLILNKSAHIKIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNY 60

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS- 401
           ++ +F +  E N++L+ ++I    +    Q++I+++  M + G  PD  TF  LL AC+ 
Sbjct: 61  SHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACAR 120

Query: 402 ----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
                     HG +V  G     +     N          +V L G+ G ++ +      
Sbjct: 121 LLDSKLGIKLHGLVVKAG----CESDAFVNTS--------LVSLYGKCGFIDNAFKVFDD 168

Query: 452 MPIPPDVSIWSSLL 465
           +P   +V+ W++++
Sbjct: 169 IP-EKNVAAWTAII 181


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 216/622 (34%), Positives = 326/622 (52%), Gaps = 77/622 (12%)

Query: 100 DEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL-LNKCGKLKEV---CQLFDKLPN 155
           D P+IK   S+ E + ++ +  +    +   +   +L L+     +++     +FD+LP 
Sbjct: 18  DVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPE 77

Query: 156 RDVISWNTMISCYT-SMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGK 213
           R+  +WNT+I     +   + + L +  +M +E  V P++ T  S++ A   +  L  GK
Sbjct: 78  RNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGK 137

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY--EIDEV------------ 259
            +H  L +  +     ++  L+ MY  CG + +A  L  R    +D+V            
Sbjct: 138 QVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREF 197

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--------- 310
           +VVL   +V GY +      AR LFD M +R+++SW +MISG   Q+  +K         
Sbjct: 198 NVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISG-YAQNGFYKEAIEIFHRM 256

Query: 311 ----------------YKSCASIGALYHGIWVHVYIKKNQISIDN--------------- 339
                             + + +G L  G WVH+Y +KN+I ID+               
Sbjct: 257 MQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGS 316

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           IE A  +F  + + NV  W +VI   AM G A    +    ME+ G  P  VT+IA+LSA
Sbjct: 317 IEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSA 376

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           CSH GLVDEG  F +       +KPK++HYGCMVDLLGRAG+LEE+   I +MP+ PD  
Sbjct: 377 CSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDV 436

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           IW +LL A + H+N+K+   A + L +  P + GA+V L+N+YA +G  D ++ +R+ ++
Sbjct: 437 IWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMK 496

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ--- 576
           DM ++K  G S IE  G +H+F   D  +  +++I+ ML EI   L  +G    + Q   
Sbjct: 497 DMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLL 556

Query: 577 -------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
                        H E++AVAFGLIST  KT + IV NLRIC DCHS MK+ S++Y R+I
Sbjct: 557 KMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKI 616

Query: 624 VIRDNGRFHRFQGGQCSCRDYW 645
           VIRD  RFH F+ G CSC DYW
Sbjct: 617 VIRDRKRFHHFEHGSCSCMDYW 638


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/584 (34%), Positives = 307/584 (52%), Gaps = 51/584 (8%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           W   +  Q+I   P     I  Y+ +  V L  KCG  KE  ++F  L +R+ +SW  +I
Sbjct: 309 WGKQLHVQVIRNLPH----IDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLI 364

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
             +   G + E + L ++M AE ++ D+  + +LIS      D+ +G  LH    +S   
Sbjct: 365 GGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHT 424

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  + N L+ MY KCG +  A+ +     + E D+V WT +++ Y +     +AR  FD
Sbjct: 425 RAVVVSNSLISMYAKCGNLQNAELIFNF--MAERDIVSWTGMITAYSQVGNIAKAREFFD 482

Query: 286 EMVERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGA-- 319
           +M  RN+I+W  M+   +   AE                          ++ CA IGA  
Sbjct: 483 DMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANK 542

Query: 320 -----LYHGIWVHVYIKKNQIS--------IDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                + H + V + +  + ++           I  A   F  +S K++  W ++I  Y+
Sbjct: 543 LGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYS 602

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++AI++F ++   G KPD ++++A+LS CSH GLV+EG  +     R +NI P +
Sbjct: 603 QHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGL 662

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+ CMVDLLGRAGHL E+ N I  MP+ P   +W +LL AC+ H N  LAE A KHL +
Sbjct: 663 EHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFD 722

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D    G ++LLA +YA AG+ DD +++R  +RD G+KK  GYS +E    VH F + D+
Sbjct: 723 LDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDV 782

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQET-----SLQHRERLAVAFGLISTSEKTTIRIVNN 601
            +P    I   L+E+   +   G   T      + H E+LAVAFG++S      I I+ N
Sbjct: 783 SHPQVIAIREKLDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKN 842

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LRIC DCH+ +K+ S V +RE VIRD  RFH F+GG CSC DYW
Sbjct: 843 LRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/498 (22%), Positives = 210/498 (42%), Gaps = 82/498 (16%)

Query: 32  RKFANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGD 88
           R+  +  P +     V +SC ++   E   ++   L   +   DP + T + + LV  G 
Sbjct: 150 RQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGA 209

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQ 148
           + +A +   +   P I     I  N ++ GY                   K   +    +
Sbjct: 210 MDFASKQFSRIKNPTI-----ICRNSMLVGYA------------------KSHGVDHALE 246

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F  +P RDV+SWN +IS  +  G  RE L ++  M  +GV PD  T  S ++A  +L  
Sbjct: 247 IFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSS 306

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           LE GK LH+ +  +   I   + + +V++Y KCG   EA+++     + + + V WT L+
Sbjct: 307 LEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFS--SLRDRNSVSWTVLI 364

Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLN--------QDAEFKYKSCAS 316
            G+++     E+  LF++M    +  +  +   +ISG  N        Q      KS  +
Sbjct: 365 GGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHT 424

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
              +     + +Y K       N++ A  +F+ ++E+++  WT +I AY+  G+  KA +
Sbjct: 425 RAVVVSNSLISMYAK-----CGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKARE 479

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
            F +M    +  + +T+ A+L A    G  ++G                           
Sbjct: 480 FFDDM----STRNVITWNAMLGAYIQHGAEEDG--------------------------- 508

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
                L+  ++ +T   + PD   + +L R C      KL +    H  +   + D + V
Sbjct: 509 -----LKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVV 563

Query: 497 -LLANIYAKAGRLDDMSR 513
             +  +Y+K GR+ +  +
Sbjct: 564 NAVITMYSKCGRISEARK 581



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 199/485 (41%), Gaps = 80/485 (16%)

Query: 49  RSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           RSC   S++     +HS LI   L     +   +    +  G L  A+ ++R     EI 
Sbjct: 33  RSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRD----EIT 88

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
             N I  N ++NGY                   K G L +  +LF ++P RDV SWNT++
Sbjct: 89  EPNVITHNIMMNGYA------------------KLGSLSDAVELFGRMPTRDVASWNTIM 130

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           S Y   G +   L +   M   G S P+  T   ++ +   L   E+   L   L +   
Sbjct: 131 SGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDS 190

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
           +    +   LVDM  +CG +  A K   R  I    ++   +++ GY KS+  D A  +F
Sbjct: 191 QDDPDVQTALVDMLVRCGAMDFASKQFSR--IKNPTIICRNSMLVGYAKSHGVDHALEIF 248

Query: 285 DEMVERNLISWTLMISGM---------LNQDAEFKYK--------------SCASIGALY 321
             M ER+++SW ++IS +         L+   +   K              +CA + +L 
Sbjct: 249 KSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLE 308

Query: 322 HGIWVHVYIKKNQISIDN------IEL---------AYDLFSEISEKNVYLWTSVIAAYA 366
            G  +HV + +N   ID       +EL         A  +FS + ++N   WT +I  + 
Sbjct: 309 WGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFL 368

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G   ++++LF +M       DQ     L+S C +   +  G       S+++++  K 
Sbjct: 369 QYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLG-------SQLHSLCLKS 421

Query: 427 QHY------GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            H         ++ +  + G+L ++A  I +     D+  W+ ++ A     N+  A   
Sbjct: 422 GHTRAVVVSNSLISMYAKCGNL-QNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREF 480

Query: 481 FKHLT 485
           F  ++
Sbjct: 481 FDDMS 485



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 41/267 (15%)

Query: 261 VVLWTTLVSGYVKSNERDEARRLF-DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           V L  TL+  Y+      +AR L  DE+ E N+I+  +M++G             A +G+
Sbjct: 60  VFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGY------------AKLGS 107

Query: 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           L                      A +LF  +  ++V  W ++++ Y  +G    A+D+F+
Sbjct: 108 LSD--------------------AVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 380 EMEETG-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV-YNIKPKMQHYGCMVDLLG 437
            M +TG + P+  TF  ++ +C   G  +     L   S+      P +Q    +VD+L 
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQ--TALVDMLV 205

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           R G ++ ++   + +  P  +   S L+   + H  V  A   FK + E D ++     +
Sbjct: 206 RCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSH-GVDHALEIFKSMPERDVVSWN---M 261

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLK 524
           + +  +K+GR+ +   + + +   G++
Sbjct: 262 VISALSKSGRVREALDMVVDMHGKGVR 288


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/549 (36%), Positives = 304/549 (55%), Gaps = 47/549 (8%)

Query: 132 TRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
            RT LL+   KCG L +   +F+++  ++V++WN MI+ Y     Y   +     +  EG
Sbjct: 444 VRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG 503

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           + PD  T  S+++       LE+GK +   +  +  +    + N LV M+  CG +  A 
Sbjct: 504 IKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAM 563

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
            L    ++ E D+V W T+++G+V+  E   A   F  M E  +    +  +G+LN    
Sbjct: 564 NLFN--DMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLN---- 617

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
               +CAS  AL  G  +H  I +  +  D               +I+ A+ +F  + +K
Sbjct: 618 ----ACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKK 673

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-YDF 412
           NVY WTS+I  YA  G  ++A++LF +M++ G KPD +TF+  LSAC+H GL+ EG + F
Sbjct: 674 NVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHF 733

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
            S K   +NI+P+M+HYGCMVDL GRAG L E+  FI  M + PD  +W +LL AC+ H 
Sbjct: 734 ESMKD--FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHL 791

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           +V+LAE   +   E DP +DG +V+L+NIYA AG   +++++R  + D G+ K+ G S I
Sbjct: 792 DVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWI 851

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-Q 576
           E  G VH F S D  +P  EEI+  L  + M +++ G                +E +L  
Sbjct: 852 EVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCH 911

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H ERLA+A+GL+ T   T I I  NLR+CGDCH+  K+ S++  R+I+ RD+ RFH F+ 
Sbjct: 912 HSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKD 971

Query: 637 GQCSCRDYW 645
           G CSC D+W
Sbjct: 972 GVCSCGDFW 980



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 203/497 (40%), Gaps = 84/497 (16%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           ERIH+H+  + +  D  +   +       G+   A+QI  +  + ++  WN      L+ 
Sbjct: 124 ERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWN-----LLLG 178

Query: 118 GYPQ-------------------------------------------EVFAIYLY----- 129
           GY Q                                           E+F++ L      
Sbjct: 179 GYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDT 238

Query: 130 -LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
            L   T L+N   KCG + +  ++F+ LP RD+I+W +MI+       +++   L   M 
Sbjct: 239 DLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVME 298

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            EGV PD+V  VSL+ A      LE GK +H  ++E  +     +   L+ MY KCG + 
Sbjct: 299 EEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSME 358

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
           +A ++     +   +VV WT +++G+ +    +EA   F++M+E  +    +    +L  
Sbjct: 359 DALEVFNL--VKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILG- 415

Query: 306 DAEFKYKSCASIGALYHGIWVH-VYIKKNQISIDNIELAY--------------DLFSEI 350
                  +C+   AL  G  +H   IK   I+ D +  A               ++F  I
Sbjct: 416 -------ACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERI 468

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
           S++NV  W ++I AY        A+  F  + + G KPD  TF ++L+ C     ++ G 
Sbjct: 469 SKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGK 528

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
              S   R    +  +     +V +    G L  + N    MP   D+  W++++     
Sbjct: 529 WVQSLIIRA-GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQ 586

Query: 471 HQNVKLAEHAFKHLTET 487
           H   + A   FK + E+
Sbjct: 587 HGENQFAFDYFKMMQES 603



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 168/394 (42%), Gaps = 43/394 (10%)

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N  ++  +  G   E + +L  + +  +     T  SL+    K ++L  G+ +H  ++ 
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           S ++    + N L+ MY KCG    A+++    E+ + DV  W  L+ GYV+    +EA 
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFD--EMPDKDVYSWNLLLGGYVQHRRYEEAF 190

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKY--KSCASIGALYHGIW-----VHVYIKKNQ 334
           RL ++MV+  +         MLN  A+ K   K       + +  W     V   +    
Sbjct: 191 RLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMH 250

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           I    ++ A  +F+ +  +++  WTS+I   A     ++A +LF  MEE G +PD+V F+
Sbjct: 251 IKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFV 310

Query: 395 ALLSACSHGGLVDE-------------------GYDFLSKKSRVYNIKPKMQ-------- 427
           +LL AC+H   +++                   G   LS  ++  +++  ++        
Sbjct: 311 SLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR 370

Query: 428 ---HYGCMVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
               +  M+    + G +EE+  F   M    I P+   + S+L AC     +K      
Sbjct: 371 NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIH 430

Query: 482 KHLTETDPL-NDGAHVLLANIYAKAGRLDDMSRI 514
             + +   + +D     L ++YAK G L D   +
Sbjct: 431 DRIIKAGYITDDRVRTALLSMYAKCGSLMDARNV 464


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 203/584 (34%), Positives = 316/584 (54%), Gaps = 51/584 (8%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           W   +  Q+I   P     I  Y+ +  V L  K G  KE   +F+ L +R+ ++W  +I
Sbjct: 308 WGKQLHAQVIRNLPH----IDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLI 363

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           S +   G + E + L ++M AE ++ D+  + +LIS      DL +G+ LH    +S   
Sbjct: 364 SGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 423

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  + N L+ MY KC  +  A+ +  R+ ++E D+V WT++++ Y +     +AR  FD
Sbjct: 424 QAVVVSNSLISMYAKCDNLQSAEAIF-RF-MNEKDIVSWTSMITAYSQVGNVAKAREFFD 481

Query: 286 EMVERNLISWTLMISGMLNQDAE------FK------------------YKSCASIGA-- 319
            M E+N+I+W  M+   +   AE      +K                  +K CA +GA  
Sbjct: 482 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 541

Query: 320 ---------LYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                    +  G+ +   +    I++      I  A  +F  ++ K++  W ++I  Y+
Sbjct: 542 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 601

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++AI++F ++ + G KPD ++++A+LS CSH GLV EG  +     R +NI P +
Sbjct: 602 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 661

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+ CMVDLLGRAGHL E+ + I  MP+ P   +W +LL AC+ H N +LAE A KH+ E
Sbjct: 662 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 721

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D  + G+++L+A IYA AG+ DD ++IR  +RD G+KK  GYS +E    VH F + D+
Sbjct: 722 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 781

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQETS-----LQHRERLAVAFGLISTSEKTTIRIVNN 601
            +P    I   L+E+   + + G   T      + H E+LAVAFGL++      I I+ N
Sbjct: 782 SHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKN 841

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LRICGDCH+ +K+ S V  RE VIRD  RFH F GG CSC DYW
Sbjct: 842 LRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 162/346 (46%), Gaps = 38/346 (10%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131
           D +++  + +  V  G +  A ++  +  EP +        N ++ GY      +  Y V
Sbjct: 192 DSEVAAALVDMFVRCGAVDLASRLFVRIKEPTM-----FCRNSMLAGY------VKTYGV 240

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
              +            +LFD +P RDV+SWN M+S  +  G  RE L ++  M ++GV  
Sbjct: 241 DHAL------------ELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRL 288

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T  S ++A  +L  L  GK LH  +  +   I   + + LV++Y K G   EA+ + 
Sbjct: 289 DSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVF 348

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA 307
               + + + V WT L+SG+++     E+  LF++M    +  +  +   +ISG  ++  
Sbjct: 349 N--SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 406

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
               +   S+  L  G    V +  + IS+    DN++ A  +F  ++EK++  WTS+I 
Sbjct: 407 LCLGRQLHSL-CLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMIT 465

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           AY+  G+  KA + F  M E       +T+ A+L A    G  ++G
Sbjct: 466 AYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDG 507



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 142/313 (45%), Gaps = 44/313 (14%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           ++T  V+LN   K G+L +  +LF ++P RDV SWNT++S Y     Y   L     M  
Sbjct: 91  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 150

Query: 187 EGVS-PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            G S P+  T+   + +   L    +   L   +++   +    +   LVDM+ +CG + 
Sbjct: 151 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 210

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM--- 302
            A +L  R  I E  +    ++++GYVK+   D A  LFD M ER+++SW +M+S +   
Sbjct: 211 LASRLFVR--IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 268

Query: 303 ------LNQDAEFKYK--------------SCASIGALYHGIWVHVYIKKNQISIDN--- 339
                 L+   + + K              +CA + +L  G  +H  + +N   ID    
Sbjct: 269 GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA 328

Query: 340 ---IEL---------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
              +EL         A  +F+ + ++N   WT +I+ +   G   ++++LF +M      
Sbjct: 329 SALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMT 388

Query: 388 PDQVTFIALLSAC 400
            DQ     L+S C
Sbjct: 389 LDQFALATLISGC 401



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 124/308 (40%), Gaps = 77/308 (25%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           L N L+  Y  CG + +A++LL   +I   +V+    +++GY K     +A  LF  M  
Sbjct: 61  LQNTLLHAYLSCGALSDARRLL-LMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPA 119

Query: 290 RNLISWTLMISGMLNQDAEF-------------------------KYKSCASIGALYHGI 324
           R++ SW  ++SG   Q  ++                           KSC ++G     +
Sbjct: 120 RDVASWNTLMSGYF-QSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLAL 178

Query: 325 WVHVYIKKNQISIDN---------------IELAYDLFSEISE----------------- 352
            +   ++K     D+               ++LA  LF  I E                 
Sbjct: 179 QLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTY 238

Query: 353 --------------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
                         ++V  W  +++A + +G  ++A+D+ ++M+  G + D  T+ + L+
Sbjct: 239 GVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLT 298

Query: 399 ACSHGGLVDEGYDFLSKKSR-VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           AC+    +  G    ++  R + +I P +     +V+L  ++G  +E+     S+    +
Sbjct: 299 ACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKEAKGVFNSLHDRNN 356

Query: 458 VSIWSSLL 465
           V+ W+ L+
Sbjct: 357 VA-WTVLI 363


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/584 (34%), Positives = 316/584 (54%), Gaps = 51/584 (8%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           W   +  Q+I   P     I  Y+ +  V L  K G  KE   +F+ L +R+ ++W  +I
Sbjct: 288 WGKQLHAQVIRNLPH----IDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLI 343

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           S +   G + E + L ++M AE ++ D+  + +LIS      DL +G+ LH    +S   
Sbjct: 344 SGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 403

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  + N L+ MY KC  +  A+ +  R+ ++E D+V WT++++ Y +     +AR  FD
Sbjct: 404 QAVVVSNSLISMYAKCDNLQSAEAIF-RF-MNEKDIVSWTSMITAYSQVGNVAKAREFFD 461

Query: 286 EMVERNLISWTLMISGMLNQDAE------FK------------------YKSCASIGA-- 319
            M E+N+I+W  M+   +   AE      +K                  +K CA +GA  
Sbjct: 462 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 521

Query: 320 ---------LYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                    +  G+ +   +    I++      I  A  +F  ++ K++  W ++I  Y+
Sbjct: 522 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 581

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++AI++F ++ + G KPD ++++A+LS CSH GLV EG  +     R +NI P +
Sbjct: 582 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 641

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+ CMVDLLGRAGHL E+ + I  MP+ P   +W +LL AC+ H N +LAE A KH+ E
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D  + G+++L+A IYA AG+ DD ++IR  +RD G+KK  GYS +E    VH F + D+
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 761

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQETS-----LQHRERLAVAFGLISTSEKTTIRIVNN 601
            +P    I   L+E+   + + G   T      + H E+LAVAFGL++      I I+ N
Sbjct: 762 SHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKN 821

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LRICGDCH+ +K+ S V  RE VIRD  RFH F GG CSC DYW
Sbjct: 822 LRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 160/346 (46%), Gaps = 38/346 (10%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131
           D +++  + +  V  G +  A ++  +  EP +        N ++ GY            
Sbjct: 172 DSEVAAALVDMFVRCGAVDLASRLFVRIKEPTM-----FCRNSMLAGYV----------- 215

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
                  K   +    +LFD +P RDV+SWN M+S  +  G  RE L ++  M ++GV  
Sbjct: 216 -------KTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRL 268

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T  S ++A  +L  L  GK LH  +  +   I   + + LV++Y K G   EA+ + 
Sbjct: 269 DSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVF 328

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA 307
               + + + V WT L+SG+++     E+  LF++M    +  +  +   +ISG  ++  
Sbjct: 329 N--SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
               +   S+  L  G    V +  + IS+    DN++ A  +F  ++EK++  WTS+I 
Sbjct: 387 LCLGRQLHSL-CLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMIT 445

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           AY+  G+  KA + F  M E       +T+ A+L A    G  ++G
Sbjct: 446 AYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEEDG 487



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 175/401 (43%), Gaps = 46/401 (11%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           ++T  V+LN   K G+L +  +LF ++P RDV SWNT++S Y     Y   L     M  
Sbjct: 71  VITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHR 130

Query: 187 EGVS-PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            G S P+  T+   + +   L    +   L   +++   +    +   LVDM+ +CG + 
Sbjct: 131 SGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 190

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM--- 302
            A +L  R  I E  +    ++++GYVK+   D A  LFD M ER+++SW +M+S +   
Sbjct: 191 LASRLFVR--IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 248

Query: 303 ------LNQDAEFKYK--------------SCASIGALYHGIWVHVYIKKNQISIDN--- 339
                 L+   + + K              +CA + +L  G  +H  + +N   ID    
Sbjct: 249 GRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA 308

Query: 340 ---IEL---------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
              +EL         A  +F+ + ++N   WT +I+ +   G   ++++LF +M      
Sbjct: 309 SALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMT 368

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
            DQ     L+S C     +  G    S   +   I+  +     ++ +  +  +L +SA 
Sbjct: 369 LDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDNL-QSAE 426

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
            I       D+  W+S++ A     NV  A   F  ++E +
Sbjct: 427 AIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKN 467



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 124/308 (40%), Gaps = 77/308 (25%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           L N L+  Y  CG + +A++LL   +I   +V+    +++GY K     +A  LF  M  
Sbjct: 41  LQNTLLHAYLSCGALSDARRLL-LMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPA 99

Query: 290 RNLISWTLMISGMLNQDAEF-------------------------KYKSCASIGALYHGI 324
           R++ SW  ++SG   Q  ++                           KSC ++G     +
Sbjct: 100 RDVASWNTLMSGYF-QSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLAL 158

Query: 325 WVHVYIKKNQISIDN---------------IELAYDLFSEISE----------------- 352
            +   ++K     D+               ++LA  LF  I E                 
Sbjct: 159 QLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTY 218

Query: 353 --------------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
                         ++V  W  +++A + +G  ++A+D+ ++M+  G + D  T+ + L+
Sbjct: 219 GVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLT 278

Query: 399 ACSHGGLVDEGYDFLSKKSR-VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           AC+    +  G    ++  R + +I P +     +V+L  ++G  +E+     S+    +
Sbjct: 279 ACARLSSLRWGKQLHAQVIRNLPHIDPYVA--SALVELYAKSGCFKEAKGVFNSLHDRNN 336

Query: 458 VSIWSSLL 465
           V+ W+ L+
Sbjct: 337 VA-WTVLI 343


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 304/541 (56%), Gaps = 49/541 (9%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG +     LF  +  + VI+WN MI+ Y   G ++E + +   M       DEVT++S+
Sbjct: 219 CGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSV 278

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            +A  +L D  +G+ +  + EE  M  S +L   LVDMY KCG++ +A++L  R  +   
Sbjct: 279 ATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDR--MHSR 336

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCA 315
           DVV W+ ++SGY +S+   EA  +F+EM    V  N ++   ++S            +CA
Sbjct: 337 DVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLS------------ACA 384

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            +GAL  G WVH YI++  + +                 I+ A   F  +  +N + WT+
Sbjct: 385 VLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTA 444

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I   A  G +++A++LF  M E   +P  VTFI +L ACSHG LV+EG    +  ++ Y
Sbjct: 445 LIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDY 504

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I P+++HYGCMVDLLGRAG ++E+  FI +MPI P+  +W +LL AC  H+NV++ E A
Sbjct: 505 GICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEA 564

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K +   DP + G ++LL+N YA  G+  + + +R ++++ G++K  G SLIE  G + +
Sbjct: 565 LKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFE 624

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVA 584
           F + D  +P   EIY  ++E+   ++  G                 Q +   H E+LA+A
Sbjct: 625 FFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIA 684

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGL+ +    TIR+  NLR+C DCHS  K+ S+VYNREI++RD  RFH F+ G CSC DY
Sbjct: 685 FGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDY 744

Query: 645 W 645
           W
Sbjct: 745 W 745



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG+L +  +LFD++ +RDV++W+ MIS YT     RE L + ++M    V+P++VTMVS
Sbjct: 319 KCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVS 378

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA   L  LE GK +H ++    + ++  L   LVD Y KCG I +A K      +  
Sbjct: 379 VLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR- 437

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
            +   WT L+ G   +    EA  LF  M+E N+    +   G+L
Sbjct: 438 -NTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVL 481



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 160/358 (44%), Gaps = 42/358 (11%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMG 212
           P R   S+N +I  +   G   + L L  +M     VSPD+ T+ + + + +++ DL +G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           + +  +  +    +   +LN L+ MY  CG +  A  L    ++    V+ W  +++GYV
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVK--GVIAWNAMIAGYV 248

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-------YKSCASIGALYHGIW 325
           K+ +       + E+VE        M  GML   A F          +C  +G    G W
Sbjct: 249 KNGD-------WKEVVE--------MFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQW 293

Query: 326 VHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           +  Y ++  +                   ++ A  LF  +  ++V  W+++I+ Y  +  
Sbjct: 294 IAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDR 353

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
            ++A+ +F EM+ T   P+ VT +++LSAC+  G ++ G  ++    R  ++   +    
Sbjct: 354 CREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETG-KWVHSYIRRKDLPLTVILGT 412

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
            +VD   + G ++++     SMP+  +   W++L++    +   + A   F  + E +
Sbjct: 413 ALVDFYAKCGCIKDAVKAFESMPV-RNTWTWTALIKGMASNGRSREALELFSSMLEAN 469



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 29/289 (10%)

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
           +  L+  ++++   ++A  LF EM++   +S                 KSC+ +  L  G
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPD-------QHTVANTVKSCSRMCDLSVG 190

Query: 324 IWVHVYIKKNQISIDNIEL---------------AYDLFSEISEKNVYLWTSVIAAYAMA 368
             V  Y  K    +D   L               A+ LF  +  K V  W ++IA Y   
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G  ++ +++F  M E     D+VT +++ +AC   G  + G  ++++ +    +      
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-QWIAEYAEEKGMLRSRNL 309

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL--TE 486
              +VD+  + G L+++      M    DV  WS+++         + A   F  +  TE
Sbjct: 310 ATALVDMYAKCGELDKARRLFDRMH-SRDVVAWSAMISGYTQSDRCREALAIFNEMQGTE 368

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR--DMGLKKQLGYSLIE 533
            +P ND   V + +  A  G L+    +   +R  D+ L   LG +L++
Sbjct: 369 VNP-NDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVD 416



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +K+  + F+ +P R+  +W  +I    S G  RE L L S M    + P +VT + 
Sbjct: 420 KCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIG 479

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           ++ A +    +E G+  H         I   + +Y  +VD+  + G I EA + +    I
Sbjct: 480 VLLACSHGCLVEEGRR-HFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPI 538

Query: 257 DEVDVVLWTTLVSG 270
            E + V+W  L+S 
Sbjct: 539 -EPNAVVWRALLSA 551


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/538 (36%), Positives = 302/538 (56%), Gaps = 61/538 (11%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G L    +LFD+L  R V+SW  MI+         EG    ++M  E + P+E+T++S
Sbjct: 238 KGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLS 297

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           LI+    +  L++GK  H +L  +   +S +L+  L+DMY KCG++G A+ L     + +
Sbjct: 298 LITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFN--GVKK 355

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            DV +W+ L+S Y   +  D+   LF EM+  ++    + +  +L+         CA  G
Sbjct: 356 KDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSL--------CAEAG 407

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           AL  G W H YI ++ + +D               ++ +A  LF+E  ++++ +W +++A
Sbjct: 408 ALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMA 467

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            ++M G  ++A++LF EME  G +P+ +TF+++  ACSH GL                  
Sbjct: 468 GFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGL------------------ 509

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
             M+HYGC+VDLLGRAGHL+E+ N I +MP+ P+  IW +LL AC+ H+N+ L E A + 
Sbjct: 510 --MEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARK 567

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E DP N G  VL +NIYA A R +D++ +R  +   G+KK+ G S IE  G VH F S
Sbjct: 568 ILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKS 627

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGL 587
           GD     + ++Y M+ E+ + L++ G                +E++L  H E+LA AFGL
Sbjct: 628 GDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGL 687

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IST+  T IRIV NLRIC DCH+  K+ S++Y R I++RD  RFH F  G CSC  YW
Sbjct: 688 ISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 155/313 (49%), Gaps = 37/313 (11%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173
           NG+  +VF           L+N   KCG L     +FD++P RDV+SW TM+ CY     
Sbjct: 117 NGFASDVFVC-------NALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKA 169

Query: 174 YREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST--MKISGSLL 231
           + E L L+ +M   GV    V ++SLI+    L D++ G+ +H ++  +    K+  S+ 
Sbjct: 170 FGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMT 229

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
             L+DMY K G +  AQ+L  R  + +  VV WT +++G ++S   DE  + F+ M+E  
Sbjct: 230 TALIDMYCKGGCLASAQRLFDR--LSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEK 287

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------------- 338
           L    + +  ++ +        C  +G L  G W H Y+ +N   +              
Sbjct: 288 LFPNEITLLSLITE--------CGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGK 339

Query: 339 --NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
              +  A  LF+ + +K+V +W+ +I+AYA      +  +LF+EM     KP+ VT ++L
Sbjct: 340 CGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSL 399

Query: 397 LSACSHGGLVDEG 409
           LS C+  G +D G
Sbjct: 400 LSLCAEAGALDLG 412



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 7/177 (3%)

Query: 124 FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
           F + L LVT  + +  KCG++     LF+ +  +DV  W+ +IS Y  +    +   L  
Sbjct: 323 FGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFV 382

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           +M    V P+ VTMVSL+S   +   L++GK  H ++    +++   L   L++MY KCG
Sbjct: 383 EMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCG 442

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISW 295
            +  A+ L    E  + D+ +W T+++G+       EA  LF EM    VE N I++
Sbjct: 443 DVTIARSLFN--EAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITF 497



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 39/373 (10%)

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGA-EGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           ++N +IS YT+  + +        M + +  + D   + SL+ A  +    ++G+ LH F
Sbjct: 54  NYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGF 113

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
            +++       + N L++MY KCG +  A+ +    ++ E DVV WTT++  YV+S    
Sbjct: 114 AQKNGFASDVFVCNALMNMYEKCGCLVSARLVFD--QMPERDVVSWTTMLGCYVRSKAFG 171

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN----- 333
           EA RL  EM     +   L    +++  A F      ++  +  G  VH YI +N     
Sbjct: 172 EALRLVREM---QFVGVKLSGVALISLIAVF-----GNLLDMKSGRAVHGYIVRNVGDEK 223

Query: 334 -QISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
            ++S+             +  A  LF  +S+++V  WT +IA    +    +    F  M
Sbjct: 224 MEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRM 283

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
            E    P+++T ++L++ C   G +D G  F +   R       +     ++D+ G+ G 
Sbjct: 284 LEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLR-NGFGMSLALVTALIDMYGKCGQ 342

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE-----TDPLNDGAHV 496
           +  +      +    DV IWS L+ A   + +V   +  F    E       P N+   V
Sbjct: 343 VGYARALFNGVK-KKDVKIWSVLISA---YAHVSCMDQVFNLFVEMLNNDVKP-NNVTMV 397

Query: 497 LLANIYAKAGRLD 509
            L ++ A+AG LD
Sbjct: 398 SLLSLCAEAGALD 410


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 212/637 (33%), Positives = 332/637 (52%), Gaps = 64/637 (10%)

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           E +++H+H++      D  +   +        ++  A ++  +    +   WNSI+   +
Sbjct: 96  EAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYI 155

Query: 116 INGYPQEVFAIYLYLVTRT--------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
             G  +E   IY  +  R+        VL    G + E C+LFD++  +D+++W+ +I+C
Sbjct: 156 EIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIAC 215

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
           +    MY E +     M   GV  DEV  VS +SA   L  + MGK +H    +   +  
Sbjct: 216 FQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY 275

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            +L N L+ MY KCG I  A+KL    E   +D++ W +++SGY+K N  D A+ +FD M
Sbjct: 276 INLQNALIYMYSKCGDIMVARKLFD--EAYLLDLISWNSMISGYLKCNLVDNAKAIFDSM 333

Query: 288 VERNLISWTLMISGMLNQD--------------AEFK---------YKSCASIGALYHGI 324
            E++++SW+ MISG    D              + FK           +CA + AL  G 
Sbjct: 334 PEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 393

Query: 325 WVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
           WVH YIK+N ++I+ I               E A ++F  + EK +  W ++I   AM G
Sbjct: 394 WVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNG 453

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
             + ++D+F  M++    P+++TF+ +L AC H GLVDEG          + I+P ++HY
Sbjct: 454 LVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHY 513

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GCMVDLLGRAG L+E+   +  MP+ PDV+ W +LL AC+ H + ++     + L E  P
Sbjct: 514 GCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQP 573

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            +DG HVLL+NIYA  G+ DD+  IR  +    + K  G S+IE  G +H+F +GD  +P
Sbjct: 574 DHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHP 633

Query: 550 HSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEK 593
             + I  ML E+ M L+ +G                 + T  +H E+LA+AFGLI+ S  
Sbjct: 634 DMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPP 693

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           T IRI+ NLRIC DCH+  K+ S+ + R+IV    G+
Sbjct: 694 TPIRIMKNLRICNDCHTAAKLISKAFCRKIVFLFRGQ 730


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/537 (36%), Positives = 300/537 (55%), Gaps = 43/537 (8%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L +  ++F+++P R V++W  + S YT+ G +RE + L  KM   GV PD   +V ++
Sbjct: 160 GRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVL 219

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           SA   + DL+ G+ +   +EE  M+ +  +   LV++Y KCGK+ +A+ +     + E D
Sbjct: 220 SACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFD--SMGEKD 277

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           +V W+T++ GY  ++   E    F +M++ NL      I G L+        SCAS+GAL
Sbjct: 278 IVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLS--------SCASLGAL 329

Query: 321 YHGIWVHVYIKKNQISIDNIELA----------------YDLFSEISEKNVYLWTSVIAA 364
             G W    I +++  + N+ +A                +++F E+ EK++ +  + I+ 
Sbjct: 330 DLGEWGISLIDRHEF-LTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISG 388

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            A  GH + +  +F + E+ G  PD  TF+ LL  C H GL+ +G  F +  S VY +K 
Sbjct: 389 LAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKR 448

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            ++HYGCMVDL GRAG L+++   I  MP+ P+  +W +LL  CR  ++ +LAE   K L
Sbjct: 449 TVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKEL 508

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
              +P N G +V L+NIY+ +GR D+ + +R  +   G+KK  GYS IE  G VH+F + 
Sbjct: 509 IALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLAD 568

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERLAVAFGLI 588
           D  +P S++IY  L ++   ++  G   T+                  H E+LAVAFGLI
Sbjct: 569 DKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLI 628

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ST     IR+V NLR+CGDCH  MK+ S++  REIV+RDN RFH F  G CSC DYW
Sbjct: 629 STDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/387 (20%), Positives = 160/387 (41%), Gaps = 73/387 (18%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LF      ++  +NT+I+ + +  ++ E L L   +   G++    T   ++ A T+  +
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            ++G +LH                    +  KCG                 DV   T+L+
Sbjct: 127 RKLGIDLH-------------------SLVVKCGF--------------NHDVAAMTSLL 153

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGM--------------------LNQDAE 308
           S Y  S   ++A ++F+E+ ER++++WT + SG                     +  D+ 
Sbjct: 154 SIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSY 213

Query: 309 FKYK---SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEI 350
           F  +   +C  +G L  G W+  ++++ ++  ++               +E A  +F  +
Sbjct: 214 FIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSM 273

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            EK++  W+++I  YA     ++ I+ FL+M +   KPDQ + +  LS+C+  G +D G 
Sbjct: 274 GEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGE 333

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
             +S   R +     +     ++D+  + G +         M    D+ I ++ +     
Sbjct: 334 WGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAK 391

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVL 497
           + +VKL+   F    +     DG+  L
Sbjct: 392 NGHVKLSFAVFGQTEKLGISPDGSTFL 418



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/305 (16%), Positives = 111/305 (36%), Gaps = 56/305 (18%)

Query: 37  VCPVSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P S  ++ V  +C     +D  E I  H+    + ++  + T +       G +  A+
Sbjct: 208 VRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKAR 267

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV------------------ 135
            +     E +I  W+++I+    N +P+E    +L ++   +                  
Sbjct: 268 SVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLG 327

Query: 136 -----------------------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
                                        +  KCG +    ++F ++  +D++  N  IS
Sbjct: 328 ALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAIS 387

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES---T 223
                G  +    +  +    G+SPD  T + L+        ++ G  L  F   S    
Sbjct: 388 GLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDG--LRFFNAISCVYA 445

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           +K +      +VD++ + G + +A +L+    +   + ++W  L+SG     +   A  +
Sbjct: 446 LKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPM-RPNAIVWGALLSGCRLVKDTQLAETV 504

Query: 284 FDEMV 288
             E++
Sbjct: 505 LKELI 509


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 220/584 (37%), Positives = 313/584 (53%), Gaps = 67/584 (11%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           +I+ G E E+      + N LIN Y                   K G L +  ++F ++ 
Sbjct: 299 VIKHGLEFEL-----FVSNALINMYA------------------KFGNLGDAQKVFQQMF 335

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
            RDV+SWN++I+ Y          G   KM   G+ PD +T+VSL S   + RD +  ++
Sbjct: 336 LRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRS 395

Query: 215 LHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
           +H F+      +   ++ N ++DMY K G I  A K+     +   DVV W TL+SGY +
Sbjct: 396 VHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK--DVVSWNTLISGYTQ 453

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-YKSCASIGALYHGIWVHVYIKK 332
           +    EA  ++  M E   I         LNQ        + A +GAL  G+ +H ++ K
Sbjct: 454 NGLASEAIEVYRMMEECREIK--------LNQGTWVSILAAYAHVGALQQGMRIHGHLIK 505

Query: 333 NQISIDN------IEL---------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
             + +D       I+L         A  LF ++  ++   W ++I+ + + GH +KA+ L
Sbjct: 506 TNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKL 565

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F EM++ G KPD VTFI+LLSACSH GLVDEG  F       Y IKP ++HYGCMVDLLG
Sbjct: 566 FREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLG 624

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAG LE + +FI  MP+ PD SIW +LL ACR H N++L + A   L E D  N G +VL
Sbjct: 625 RAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVL 684

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           L+NIYA  G+ + + ++R   R+ GLKK  G+S IE    V  F +G+  +P  +EIY  
Sbjct: 685 LSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAE 744

Query: 558 LNEIEMTLQQQG--------LQETS--------LQHRERLAVAFGLISTSEKTTIRIVNN 601
           L  +   ++  G        LQ+            H ERLA+AFG+IST  K+ IRI  N
Sbjct: 745 LRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKN 804

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LR+CGDCH+  K  S++  REIV+RD+ RFH F+ G CSC DYW
Sbjct: 805 LRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 126/549 (22%), Positives = 247/549 (44%), Gaps = 64/549 (11%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           SC+     +R+H+ L+ +  ++   IS ++       GD+  ++    Q    ++  WNS
Sbjct: 85  SCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNS 144

Query: 110 IIENQLINGYPQEVFAIY--LYLVTR--------TVLLNKCGKL----KEVC-------- 147
           +I   + NG+ +E    +  L LVT+          +L  C  L    K  C        
Sbjct: 145 MISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQ 204

Query: 148 -----------------------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
                                   LFD +P RD+ SWN MIS     G   + L +L +M
Sbjct: 205 WDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 264

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
             EG++ D VT+ S++    +L D+     +HL++ +  ++    + N L++MY K G +
Sbjct: 265 RLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNL 324

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
           G+AQK+  +  +   DVV W ++++ Y ++++   AR  F +M    L    L +  + +
Sbjct: 325 GDAQKVFQQMFLR--DVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLAS 382

Query: 305 QDAEFK-YKSCASI-------GALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVY 356
             A+ + YK+  S+       G L   + +   +      +  I+ A+ +F+ I  K+V 
Sbjct: 383 IAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVV 442

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
            W ++I+ Y   G A +AI+++  MEE    K +Q T++++L+A +H G + +G      
Sbjct: 443 SWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGH 502

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
             +  N+   +    C++DL G+ G L ++      +P    V  W++++     H + +
Sbjct: 503 LIKT-NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVP-WNAIISCHGIHGHGE 560

Query: 476 LAEHAFKHLTETDPLNDGAHVL-LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY----- 529
            A   F+ + +     D    + L +  + +G +D+       +++ G+K  L +     
Sbjct: 561 KALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMV 620

Query: 530 SLIEQGGFV 538
            L+ + GF+
Sbjct: 621 DLLGRAGFL 629


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/534 (36%), Positives = 301/534 (56%), Gaps = 41/534 (7%)

Query: 143  LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
            L +   LFD +  RD +SW+ M+  +  +G Y    G   ++   G  PD  T+  +I A
Sbjct: 786  LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRA 845

Query: 203  RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
               L++L+MG+ +H  + +  + +   +   LVDMY KC +I +A+ L  +  + E D+V
Sbjct: 846  CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDK--MXERDLV 903

Query: 263  LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
             WT ++ GY +    +E+  LFD+M E  ++   + +  ++         +CA +GA++ 
Sbjct: 904  TWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVF--------ACAKLGAMHK 955

Query: 323  GIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAM 367
               +  YI++ +  +D I               E A ++F  + EKNV  W+++IAAY  
Sbjct: 956  ARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 1015

Query: 368  AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
             G  +KA+DLF  M  +G  P+++T ++LL ACSH GLV+EG  F S     Y+++  ++
Sbjct: 1016 HGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVK 1075

Query: 428  HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
            HY C+VDLLGRAG L+E+   I SM    D  +W + L ACR H++V LAE A   L E 
Sbjct: 1076 HYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLEL 1135

Query: 488  DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
             P N G ++LL+NIYA AGR +D+++IR  +    LKK  G++ IE     H+F+ GD  
Sbjct: 1136 QPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTT 1195

Query: 548  NPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTS 591
            +P S+EIY ML  +   L+  G + +T+                 H E+LA+AFGLI+T 
Sbjct: 1196 HPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATP 1255

Query: 592  EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            E T IRI+ NLR+CGDCH+F K+ S +  R I++RD  RFH F+ G CSC DYW
Sbjct: 1256 EHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 174/492 (35%), Positives = 271/492 (55%), Gaps = 41/492 (8%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L +   LFD +  RD +SW+ M+  +  +G Y    G   ++   G  PD  T+  +I A
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 169

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
              L++L+MG+ +H  + +  + +   +   LVDMY KC +I +A+ L  +  + E D+V
Sbjct: 170 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDK--MQERDLV 227

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            WT ++ GY +  + +E+  LF++M E  ++   + +  ++         +CA +GA++ 
Sbjct: 228 TWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF--------ACAKLGAMHK 279

Query: 323 GIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAM 367
              +  YI++ +  +D I               E A ++F  + EKNV  W+++IAAY  
Sbjct: 280 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 339

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G  +KA+DLF  M  +G  PD++T  +LL ACSH GLV+EG  F S     Y+++  ++
Sbjct: 340 HGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVK 399

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HY C+VDLLGRAG L+E+   I SM I  D  +W + L ACR H++V LAE A   L E 
Sbjct: 400 HYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLEL 459

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
              N G +VLL+NIYA AGR +D+++IR  +    LKK  G++ IE     H+F+ GD  
Sbjct: 460 QSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTT 519

Query: 548 NPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTS 591
           +P S+EIY ML  +   L+  G + +T+                 H E+LA+AFGLI+T 
Sbjct: 520 HPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATP 579

Query: 592 EKTTIRIVNNLR 603
           E T IRI+ NLR
Sbjct: 580 EHTPIRIIKNLR 591



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 114/274 (41%), Gaps = 46/274 (16%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML---------------- 303
           ++V+   L+  Y      D+A  LFD M  R+ +SW++M+ G                  
Sbjct: 93  NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 152

Query: 304 -------NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IE 341
                  N    F  ++C  +  L  G  +H  + K  + +D+               IE
Sbjct: 153 RCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIE 212

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  LF ++ E+++  WT +I  YA  G A +++ LF +M E G  PD+V  + ++ AC+
Sbjct: 213 DARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACA 272

Query: 402 HGGLVDEGY---DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
             G + +     D++ +K    ++         M+D+  + G +E +      M    +V
Sbjct: 273 KLGAMHKARIIDDYIQRKKFQLDVILGTA----MIDMYAKCGCVESAREIFDRME-EKNV 327

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
             WS+++ A   H   + A   F  +  +  L D
Sbjct: 328 ISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPD 361



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 46/249 (18%)

Query: 260  DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML---------------- 303
            ++++   LV  Y      D+A  LFD M  R+ +SW++M+ G                  
Sbjct: 769  NLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELI 828

Query: 304  -------NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IE 341
                   N    F  ++C  +  L  G  +H  + K  + +D+               IE
Sbjct: 829  RCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIE 888

Query: 342  LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
             A  LF ++ E+++  WT +I  YA  G+A +++ LF +M E G  PD+V  + ++ AC+
Sbjct: 889  DARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACA 948

Query: 402  HGGLVDEGY---DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
              G + +     D++ +K    ++         M+D+  + G +E +      M    +V
Sbjct: 949  KLGAMHKARTIDDYIQRKKFQLDVILGTA----MIDMHAKCGCVESAREIFDRME-EKNV 1003

Query: 459  SIWSSLLRA 467
              WS+++ A
Sbjct: 1004 ISWSAMIAA 1012


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/553 (35%), Positives = 306/553 (55%), Gaps = 58/553 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++F ++ N ++  +N MI  ++      +      +   +G+ PD +T   L+ + TKL 
Sbjct: 74  RIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLH 133

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            + MG   H  + +   +    + N LV MY   G    A  +  R  +  VDVV WT++
Sbjct: 134 CISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQR--MYYVDVVSWTSM 191

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK----------------- 310
           + G+ K  + + AR+LFD+M E+NL++W+ MISG   Q+  F                  
Sbjct: 192 IRGFNKCGDVESARKLFDQMPEKNLVTWSTMISG-YAQNNHFDKAVELFKVLQSQGVRAN 250

Query: 311 -------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                    SCA +GAL  G   H Y+ KN ++++               +I+ A  +F 
Sbjct: 251 ETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFE 310

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           ++ E++   WT++IA  AM G++++++  F  M E G  P  +TF A+LSACSHGGLV+ 
Sbjct: 311 DLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVER 370

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G+       R + ++P+++HYGCMVDLLGRAG LEE+  F+  MP+ P+  +W +LL AC
Sbjct: 371 GFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGAC 430

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H+N ++ E   K L +  P + G +VLL+NIYA A   + ++ +R  ++  GLKK  G
Sbjct: 431 RIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPG 490

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QET 573
           +SLIE  G VHKFT GD  +P  ++I  M  EI M ++  G                +E+
Sbjct: 491 HSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKES 550

Query: 574 SL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
           +L +H E+LA+AFG++ +   T IRIV NLR+C DCH+  K+ S+V+ RE+++RD  RFH
Sbjct: 551 ALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFH 610

Query: 633 RFQGGQCSCRDYW 645
            F+ G CSC DYW
Sbjct: 611 HFRQGLCSCMDYW 623



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 150/315 (47%), Gaps = 36/315 (11%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAI-----YLYLVTRTVLL---NKCGKLKE 145
            II+ G E ++ + NS++      G  +    I     Y+ +V+ T ++   NKCG ++ 
Sbjct: 144 HIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVES 203

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
             +LFD++P +++++W+TMIS Y     + + + L   + ++GV  +E  MVS+IS+   
Sbjct: 204 ARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAH 263

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           L  LE+G+  H ++ ++ M ++  L   LVDMY +CG I +A  +    ++ E D + WT
Sbjct: 264 LGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVF--EDLPERDTLSWT 321

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
            L++G       + + + F  MVE  L    +  + +L+        +C+  G +  G  
Sbjct: 322 ALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLS--------ACSHGGLVERGFQ 373

Query: 326 VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
           +   +K++                  E  +  +  ++     AG  ++A    L+M    
Sbjct: 374 IFESMKRDH---------------RVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMP--- 415

Query: 386 TKPDQVTFIALLSAC 400
            KP+   + ALL AC
Sbjct: 416 VKPNAPVWGALLGAC 430



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 24/160 (15%)

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           I+ A  +FS+I   N++++ ++I  ++ + +  +A   +++ +  G  PD +TF  L+ +
Sbjct: 69  IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128

Query: 400 CS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           C+           HG ++  G++       VY     +  Y    D         E+A  
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFE-----KDVYVQNSLVHMYATFGD--------TEAATL 175

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           I       DV  W+S++R      +V+ A   F  + E +
Sbjct: 176 IFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKN 215


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 300/571 (52%), Gaps = 32/571 (5%)

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN--KCGKLKEVCQLFDKLPNRDVI 159
           P +    ++   + I+GY       Y+  V   +L    KCG ++    +F  + +R+V+
Sbjct: 251 PAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVV 310

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SWNTMI  Y   G   E      KM  EGV P  V+M+  + A   L DLE G+ +H  L
Sbjct: 311 SWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLL 370

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
           +E  +    S++N L+ MY KC ++  A  + G   +    VV W  ++ GY ++   +E
Sbjct: 371 DEKKIGFDVSVMNSLISMYSKCKRVDIAASVFG--NLKHKTVVTWNAMILGYAQNGCVNE 428

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN------ 333
           A  LF EM   ++   +  +  ++   A+    S        HG+ +   + KN      
Sbjct: 429 ALNLFCEMQSHDIKPDSFTLVSVITALADL---SVTRQAKWIHGLAIRTLMDKNVFVCTA 485

Query: 334 ----QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                     I+ A  LF  + E++V  W ++I  Y   GH ++A+DLF EM+    KP+
Sbjct: 486 LIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPN 545

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
           ++TF+++++ACSH GLV+EG  +       Y ++P M HYG MVDLLGRAG L+++  FI
Sbjct: 546 EITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFI 605

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             MP+ P +++  ++L ACR H+NV+L E     L + DP + G HVLLAN+YA A   D
Sbjct: 606 QDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWD 665

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
            ++R+R  +   G++K  G SL+E    VH F SG   +P S+ IY  L  +   ++  G
Sbjct: 666 KVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAG 725

Query: 570 --------------LQETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                         ++E  L  H ERLA+AFGL++T   T I I  NLR+CGDCH   K 
Sbjct: 726 YVPDTNSIHDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKY 785

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S V  REI++RD  RFH F+ G CSC DYW
Sbjct: 786 ISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/566 (35%), Positives = 305/566 (53%), Gaps = 62/566 (10%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG++     +FD++  RDV++WNTMI  Y   G+  E   L  +M    V PDE+ + ++
Sbjct: 162 CGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNI 221

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +SA  +  ++   + ++ FL E+ +++   LL  LV MY   G +  A +   +  +   
Sbjct: 222 VSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVR-- 279

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--------- 310
           ++ + T +VSGY K+   D+AR +FD+   ++L+ WT MIS     D   +         
Sbjct: 280 NLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMC 339

Query: 311 --------------YKSCASIGALYHGIWVHVYIKKNQIS----IDN-----------IE 341
                           +C ++G L    WVH Y   N +     IDN           ++
Sbjct: 340 CSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLD 399

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A D+F ++  +NV  W+S+I A+AM G A  ++ LF +M++   +P++VTF+ +L  CS
Sbjct: 400 AARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCS 459

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GLV+EG    +  +  YNI PK++HYGCMVDL GRA  L E+   I SMP+ P+V IW
Sbjct: 460 HSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIW 519

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            SL+ ACR H  ++L E A K + + +P +DGA VL++NIYA+  R D +  IR  +   
Sbjct: 520 GSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKK 579

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------- 570
            + K+ G S I+  G  H+F  GD  +  S EIY  L E+   L+  G            
Sbjct: 580 KVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDV 639

Query: 571 -----QETSLQHRERLAVAFGLISTSEKT------TIRIVNNLRICGDCHSFMKVTSQVY 619
                ++  L H E+LA+ FGL++  ++        IRIV NLR+C DCH+F K+ S+VY
Sbjct: 640 EEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVY 699

Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
             EI++RD  RFHR++ G CSCRDYW
Sbjct: 700 ELEIIVRDRTRFHRYKDGLCSCRDYW 725


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 201/584 (34%), Positives = 308/584 (52%), Gaps = 51/584 (8%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           W   +  Q+I   P     I  Y+ +  V L  KCG  KE  ++F  L +R+ +SW  +I
Sbjct: 312 WGKQLHAQVIRSLP----CIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLI 367

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
             +   G + E L L ++M AE ++ D+  + ++IS  +   D+ + + LH    +S   
Sbjct: 368 GGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHT 427

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  + N L+ MY KCG +  A+ +    E  E D+V WT +++ Y +     +AR  FD
Sbjct: 428 RAVVISNSLISMYAKCGNLQNAESIFSSME--ERDIVSWTGMLTAYSQVGNIGKAREFFD 485

Query: 286 EMVERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGALY 321
            M  RN+I+W  M+   +   AE                          ++ CA +GA  
Sbjct: 486 GMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANK 545

Query: 322 HGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYA 366
            G  +  +  K  + +D                I  A  +F  +S K++  W ++I  Y+
Sbjct: 546 LGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYS 605

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++AI++F +M + G KPD ++++A+LS+CSH GLV EG  +     R +N+ P +
Sbjct: 606 QHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGL 665

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+ CMVDLL RAG+L E+ N I  MP+ P   +W +LL AC+ H N +LAE A KHL +
Sbjct: 666 EHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFD 725

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D  + G ++LLA IYA AG+  D +++R  +RD G+KK  GYS +E    VH F + D+
Sbjct: 726 LDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDV 785

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQET-----SLQHRERLAVAFGLISTSEKTTIRIVNN 601
            +P    I   L+E+   + Q G   T      + H E+LAVAFG+++      I I+ N
Sbjct: 786 SHPQVIAIREKLDELMEKIAQLGYVRTESLRSEIHHSEKLAVAFGIMNLPAWMPIHIMKN 845

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LRICGDCH+ +K+ S V  RE VIRD  RFH F+GG CSC DYW
Sbjct: 846 LRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 114/495 (23%), Positives = 209/495 (42%), Gaps = 74/495 (14%)

Query: 32  RKFANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGD 88
           R+  +  P +       +SC ++   E   ++   L       DP ++T + +  V  G 
Sbjct: 153 RRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGA 212

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQ 148
           + +A +   Q + P +        N ++ GY +       Y V   +            +
Sbjct: 213 VDFASKQFSQIERPTV-----FCRNSMLAGYAKS------YGVDHAL------------E 249

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LF+ +P RDV+SWN M+S  +  G  RE L +   M   GV  D  T  S ++A  KL  
Sbjct: 250 LFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSS 309

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L  GK LH  +  S   I   + + +V++Y KCG   EA+++     + + + V WT L+
Sbjct: 310 LGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFS--SLRDRNTVSWTVLI 367

Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324
            G+++     E+  LF++M    +  +  +   +ISG  N+      +   S+ +L  G 
Sbjct: 368 GGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSL-SLKSGH 426

Query: 325 WVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
              V I  + IS+     N++ A  +FS + E+++  WT ++ AY+  G+  KA + F  
Sbjct: 427 TRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDG 486

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M    +  + +T+ A+L A    G  ++G                ++ Y  M        
Sbjct: 487 M----STRNVITWNAMLGAYIQHGAEEDG----------------LKMYSAM-------- 518

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV-LLA 499
                   +T   + PD   + +L R C      KL +    H  +   + D + +  + 
Sbjct: 519 --------LTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVI 570

Query: 500 NIYAKAGRLDDMSRI 514
            +Y+K GR+ +  +I
Sbjct: 571 TMYSKCGRISEARKI 585



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/473 (22%), Positives = 195/473 (41%), Gaps = 83/473 (17%)

Query: 61  HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQLING 118
           H  L++  L     +   +    +  G L  A+ ++R GD  EP     N I  N ++NG
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLR-GDITEP-----NVITHNIMMNG 104

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           Y                   K G L +  +LF ++P RDV SWNT++S Y   G + + +
Sbjct: 105 YA------------------KLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAM 146

Query: 179 GLLSKMGAEGVS-PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
                M   G S P+  T    + +   L   E+   L   L +   +    +   +VDM
Sbjct: 147 ESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDM 206

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297
           + +CG +  A K     +I+   V    ++++GY KS   D A  LF+ M ER+++SW +
Sbjct: 207 FVRCGAVDFASKQFS--QIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNM 264

Query: 298 MISGMLNQDAEFK------------------------YKSCASIGALYHGIWVHVYIKKN 333
           M+S  L+Q    +                          +CA + +L  G  +H  + ++
Sbjct: 265 MVSA-LSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRS 323

Query: 334 QISIDN------IEL---------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
              ID       +EL         A  +FS + ++N   WT +I  +   G   ++++LF
Sbjct: 324 LPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELF 383

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY------GCM 432
            +M       DQ     ++S CS+   +D     +    +++++  K  H         +
Sbjct: 384 NQMRAELMTVDQFALATIISGCSN--RMD-----MCLARQLHSLSLKSGHTRAVVISNSL 436

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
           + +  + G+L+ + +  +SM    D+  W+ +L A     N+  A   F  ++
Sbjct: 437 ISMYAKCGNLQNAESIFSSME-ERDIVSWTGMLTAYSQVGNIGKAREFFDGMS 488



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 153/351 (43%), Gaps = 61/351 (17%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++HS  + +   R   IS  +       G+L  A+ I    +E +I  W       ++  
Sbjct: 416 QLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTG-----MLTA 470

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           Y Q               +   GK +E    FD +  R+VI+WN M+  Y   G   +GL
Sbjct: 471 YSQ---------------VGNIGKARE---FFDGMSTRNVITWNAMLGAYIQHGAEEDGL 512

Query: 179 GLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
            + S M  E  V PD VT V+L      +   ++G  +     +  + +  S++N ++ M
Sbjct: 513 KMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITM 572

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLI 293
           Y KCG+I EA+K+     +   D+V W  +++GY +     +A  +FD+M+++    + I
Sbjct: 573 YSKCGRISEARKIFDF--LSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYI 630

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
           S+  ++S            SC+  G +  G +    +K++     N+    + FS     
Sbjct: 631 SYVAVLS------------SCSHSGLVQEGKFYFDMLKRDH----NVSPGLEHFS----- 669

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC-SHG 403
                  ++   A AG+  +A +L  EM     KP    + ALLSAC +HG
Sbjct: 670 ------CMVDLLARAGNLIEAKNLIDEMP---MKPTAEVWGALLSACKTHG 711


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 217/665 (32%), Positives = 334/665 (50%), Gaps = 124/665 (18%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKIWN 108
           C ++ + +++H+ +I T  +RDP  + ++  F   +   DL YA++I R    P    +N
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYN 80

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
           ++I     +  P +   +++ +V             E C +                   
Sbjct: 81  TLIRALSESNDPCDALLVFIEMV-------------EDCSV------------------- 108

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
                                 P+  T  S+  A  +   L  G+ +H    +  +    
Sbjct: 109 ---------------------EPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDE 147

Query: 229 SLLNYLVDMYFKCGKIGEAQKLL-GRYEID------------EVDVVLWTTLVSGYVKSN 275
            +++ +V MY  CG + +A +L   R  +D            + DVVLW  ++ GYV+  
Sbjct: 148 FVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIG 207

Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-----------------YKSCASI- 317
           E + AR LFDEM +R+++SW +MI+G   Q   FK                 Y +  S+ 
Sbjct: 208 ELEVARNLFDEMPQRSVVSWNVMIAG-YAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVL 266

Query: 318 ------GALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVY 356
                 GAL  G WVH+Y  +N I +D+               IE A  +F  + ++NV 
Sbjct: 267 PAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVV 326

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W+++IA  AM G A+  +D F +ME  G  P  VT+I LLSACSH GLV+EG  F    
Sbjct: 327 TWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHM 386

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            RV  ++P+++HYGCMVDLLGRAG LEES   I +MPI PD  IW +LL AC+ H NV++
Sbjct: 387 VRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEM 446

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
            +   +HL E  P + G++V L+NIYA  G  + ++++R+ +++M ++K  G S IE  G
Sbjct: 447 GKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDG 506

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRER 580
            +H+F   D  +P S++I+ ML E+   L   G +  + Q                H E+
Sbjct: 507 VIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEK 566

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           +A+AFGLIST  +T +RI  NLRIC DCHS +K+ S++Y R+I++RD  RFH F  G CS
Sbjct: 567 IAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCS 626

Query: 641 CRDYW 645
           C DYW
Sbjct: 627 CMDYW 631


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/538 (35%), Positives = 294/538 (54%), Gaps = 41/538 (7%)

Query: 139  KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
            +CG L++  ++F  L +R+V+SW  MI  +   G  R+   L  +M  +G  P + T  S
Sbjct: 634  RCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSS 693

Query: 199  LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            ++ A      L+ GK +   +  S  ++   + N L+  Y K G + +A+K+  +  +  
Sbjct: 694  ILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDK--MPN 751

Query: 259  VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             D++ W  +++GY ++     A +   +M E+ ++        +LN        +C+S  
Sbjct: 752  RDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILN--------ACSSFS 803

Query: 319  ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
            AL  G  VH  I K ++  D               ++E A ++F   +EKNV  W ++I 
Sbjct: 804  ALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMIN 863

Query: 364  AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            AYA  G A KA+D F  M++ G KPD  TF ++LSAC+H GLV EG    S     + + 
Sbjct: 864  AYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLS 923

Query: 424  PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
            P ++HYGC+V LLGRAG  +E+   I  MP PPD ++W +LL ACR H NV LAEHA  +
Sbjct: 924  PTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANN 983

Query: 484  LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
              + +  N   +VLL+N+YA AGR DD+++IR  +   G++K+ G S IE    +H+F +
Sbjct: 984  ALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIA 1043

Query: 544  GDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGL 587
             D  +P + EIY  L  + + +++ G                QETSL  H ERLA+A+GL
Sbjct: 1044 ADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGL 1103

Query: 588  ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            + T   T IRI  NLRICGDCH+  K  S++  REI+ RD+ RFH F+ G+CSC D+W
Sbjct: 1104 LKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 135/591 (22%), Positives = 258/591 (43%), Gaps = 80/591 (13%)

Query: 52  SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII 111
           S +DE +RIH   +   L  D ++ T +    V  GD+  A+Q +    + ++ ++N++I
Sbjct: 298 SMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALI 357

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNK-------------------------------- 139
                +G+ +E F  Y  + +  V++N+                                
Sbjct: 358 AALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHS 417

Query: 140 ---------------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
                          CG L    +LF+ +P RD+ISWN +I+ Y       E + L  +M
Sbjct: 418 SDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQM 477

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
            +EGV P  VT + L+SA T       GK +H  +  S +K +G L N L++MY +CG I
Sbjct: 478 QSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSI 537

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
            EAQ +         D++ W ++++G+ +    + A +LF EM +  L    +  + +L 
Sbjct: 538 MEAQNVFEGTRAR--DIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVL- 594

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSE 349
                    C +  AL  G  +H+ I ++ + +D               +++ AY++F  
Sbjct: 595 -------VGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHS 647

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           +  +NV  WT++I  +A  G  +KA +LF +M+  G KP + TF ++L AC     +DEG
Sbjct: 648 LRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEG 707

Query: 410 YDFLSK-KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
              ++   +  Y +   + +   ++    ++G + ++      MP   D+  W+ ++   
Sbjct: 708 KKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKMP-NRDIMSWNKMIAGY 764

Query: 469 RCHQNVKLA-EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL--RDMGLKK 525
             +     A + A++   +   LN  + V + N  +    L++  R+  ++  R M    
Sbjct: 765 AQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDV 824

Query: 526 QLGYSLIEQGGFVHKFTSG-DIFNPHSEEIYLMLNEIEMTLQQQGLQETSL 575
           ++G +LI             ++F+  +E+  +  N +     Q GL   +L
Sbjct: 825 RVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKAL 875



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/491 (22%), Positives = 207/491 (42%), Gaps = 74/491 (15%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           S+ E +RIH+ ++   +  D  +S  +    V    +  A Q+  +    ++  WNS+I 
Sbjct: 97  SLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLIS 156

Query: 113 NQLINGYPQEVFAI---------------YLYLVT------------------------- 132
                G+ ++ F +               Y+ ++T                         
Sbjct: 157 CYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQR 216

Query: 133 ----RTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
               +  LLN   KC  L    Q+F  +  RDV+S+NTM+  Y       E +GL  +M 
Sbjct: 217 DPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMS 276

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
           +EG+ PD+VT ++L+ A T    L+ GK +H       +     +   L  M+ +CG + 
Sbjct: 277 SEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVA 336

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
            A++ L  +   + DVV++  L++   +    +EA   + +M    ++        +LN 
Sbjct: 337 GAKQALEAFA--DRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLN- 393

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEI 350
                  +C++  AL  G  +H +I +   S D               ++  A +LF+ +
Sbjct: 394 -------ACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTM 446

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            ++++  W ++IA YA      +A+ L+ +M+  G KP +VTF+ LLSAC++     +G 
Sbjct: 447 PKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG- 505

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
             + +      IK        ++++  R G + E+ N         D+  W+S++     
Sbjct: 506 KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR-ARDIISWNSMIAGHAQ 564

Query: 471 HQNVKLAEHAF 481
           H + + A   F
Sbjct: 565 HGSYEAAYKLF 575



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 200/453 (44%), Gaps = 31/453 (6%)

Query: 32  RKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
           R+ A VC  S+     E++ SS        S+L++  +MRD Q      E      DL  
Sbjct: 18  RRVAGVCEFSVRPWPAEQNRSSTGAAGGASSNLVSVKVMRDEQHRGSERE------DLSN 71

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV---------LLN---K 139
           A Q   +  E     +  +++N        E   I+  +V   V         L+N   K
Sbjct: 72  AYQ--PRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVK 129

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           C  + +  Q+F K+P RDVISWN++ISCY   G  ++   L  +M   G  P ++T +S+
Sbjct: 130 CRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISI 189

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           ++A     +LE GK +H  + E+  +    + N L++MY KC  +  A+++     I   
Sbjct: 190 LTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFS--GIYRR 247

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ-------DAEFKYK 312
           DVV + T++  Y +    +E   LF +M    +    +    +L+        D   +  
Sbjct: 248 DVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH 307

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
             A    L   I V   +    +   ++  A       ++++V ++ ++IAA A  GH +
Sbjct: 308 KLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYE 367

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +A + + +M   G   ++ T++++L+ACS    +  G    S  S V +    +Q    +
Sbjct: 368 EAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGH-SSDVQIGNSL 426

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           + +  R G L  +     +MP   D+  W++++
Sbjct: 427 ISMYARCGDLPRARELFNTMP-KRDLISWNAII 458



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 68/396 (17%)

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           +    V L+   T+ R L   K +H  + E+ +     L N L++MY KC  + +A ++ 
Sbjct: 81  NRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
              ++   DV+ W +L+S Y +   + +A +LF+EM     I   +    +L        
Sbjct: 141 --LKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILT------- 191

Query: 312 KSCASIGALYHGIWVHVYI--------KKNQISI-------DNIELAYDLFSEISEKNVY 356
            +C S   L +G  +H  I         + Q S+       +++  A  +FS I  ++V 
Sbjct: 192 -ACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVV 250

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG------- 409
            + +++  YA   + ++ I LF +M   G  PD+VT+I LL A +   ++DEG       
Sbjct: 251 SYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLA 310

Query: 410 ---------------YDFLSKKSRVYNIKPKMQH--------YGCMVDLLGRAGHLEESA 446
                               +   V   K  ++         Y  ++  L + GH EE+ 
Sbjct: 311 VNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAF 370

Query: 447 NFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN--- 500
                M    +  + + + S+L AC   + +   E    H++E    +D   V + N   
Sbjct: 371 EQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSD---VQIGNSLI 427

Query: 501 -IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
            +YA+ G   D+ R R     M  +  + ++ I  G
Sbjct: 428 SMYARCG---DLPRARELFNTMPKRDLISWNAIIAG 460


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 301/563 (53%), Gaps = 60/563 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L    Q  D +  + V++WN MIS Y   G + E L +  KM   G+  DE T  S++
Sbjct: 239 GELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVL 298

Query: 201 SARTKLRDLEMGKNLHLFL----EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           SA         GK +H ++       ++  S S+ N L  +Y+KCGK+ EA+++  +  +
Sbjct: 299 SACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPV 358

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN------------ 304
              D+V W  ++SGYV +   DEA+  F+EM ERNL++WT+MISG+              
Sbjct: 359 K--DLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFN 416

Query: 305 -------QDAEFKYK----SCASIGALYHGIWVHVYIKK----NQISIDN---------- 339
                  +  ++ +     +CA + AL HG  +H  + +    + +S  N          
Sbjct: 417 RMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCG 476

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +E A+ LF  +   +   W ++IAA    GH  +A++LF  M +    PD++TF+ +LS
Sbjct: 477 VVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLS 536

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
            CSH GLV+EG+ +    S +Y I P   HY  M+DLL RAG   E+ + I +MP+ P  
Sbjct: 537 TCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGP 596

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            IW +LL  CR H N+ L   A + L E  P +DG +VLL+N+YA  GR DD++++R  +
Sbjct: 597 PIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLM 656

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL-- 575
           RD G+KK+ G S IE    VH F   DI +P  + +Y  L E+ + +++ G + +T    
Sbjct: 657 RDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVL 716

Query: 576 -------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                         H E+LAV FGL+      T+R+  NLRICGDCH+  K  S+V  RE
Sbjct: 717 HDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVERE 776

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           IV+RD  RFH F+ G+CSC +YW
Sbjct: 777 IVVRDGKRFHHFKNGECSCGNYW 799



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 113/521 (21%), Positives = 203/521 (38%), Gaps = 118/521 (22%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+H+I +       I  ++ +    + DL  A  +  +  +P+I               
Sbjct: 37  VHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDI--------------- 81

Query: 120 PQEVFAIYLYLVTRTVLL---NKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMY 174
                      V RT L+   +  G      ++F   P   RD + +N MI+ Y+     
Sbjct: 82  -----------VARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDG 130

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKL-RDLEMGKNLHLFLEESTMKISGSLLNY 233
              + L   +   G  PD  T  S++ A   +  D +  + +H  + +S      S+LN 
Sbjct: 131 FGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNA 190

Query: 234 LVDMYFKCG---------KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
           L+ ++ KC           +  A+KL    E+ E D + WTT+++GYV++ E D AR+  
Sbjct: 191 LLSVFVKCASSPLVSSSSLMAAARKLFD--EMTERDELSWTTMIAGYVRNGELDAARQFL 248

Query: 285 DEMVERNLISWTLMISGMLN-------------------QDAEFKYKS----CASIGALY 321
           D M E+ +++W  MISG ++                   Q  EF Y S    CA+ G   
Sbjct: 249 DGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFL 308

Query: 322 HGIWVHVYIKKNQ--------ISIDN---------------------------------- 339
           HG  VH YI + +        +S++N                                  
Sbjct: 309 HGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAIL 368

Query: 340 --------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                   I+ A   F E+ E+N+  WT +I+  A  G  ++++ LF  M+  G +P   
Sbjct: 369 SGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDY 428

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
            F   + AC+    +  G    ++  R+      +     ++ +  + G +E +     +
Sbjct: 429 AFAGAIIACAWLAALMHGRQLHAQLVRL-GFDSSLSAGNALITMYAKCGVVEAAHCLFLT 487

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           MP    VS W++++ A   H +   A   F+ + + D L D
Sbjct: 488 MPYLDSVS-WNAMIAALGQHGHGAQALELFELMLKEDILPD 527



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           + + +H  +  S  K  G +LN L+D+Y K   +  A  L    EI + D+V  TTL++ 
Sbjct: 33  IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFD--EIRQPDIVARTTLIAA 90

Query: 271 YVKSNERDEARRLF--DEMVERNLISWTLMISGMLNQDAEF 309
           +  +   + AR +F    +  R+ + +  MI+G  + +  F
Sbjct: 91  HSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGF 131


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/538 (36%), Positives = 290/538 (53%), Gaps = 41/538 (7%)

Query: 139  KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
            +CG L++   +F  L +RDV+SW  MI      G   + + L  +M  EG  P + T  S
Sbjct: 579  RCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSS 638

Query: 199  LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            ++   T    L+ GK +  ++  S  ++   + N L+  Y K G + +A+++  +  +  
Sbjct: 639  ILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDK--MPS 696

Query: 259  VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             D+V W  +++GY ++     A     +M E++++        +LN        +C+S  
Sbjct: 697  RDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLN--------ACSSFS 748

Query: 319  ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
            AL  G  VH  I K ++  D               +   A ++F  I EKNV  W ++I 
Sbjct: 749  ALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMIN 808

Query: 364  AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            AYA  G A KA+  F  ME+ G KPD  TF ++LSAC+H GLV EGY   S     Y + 
Sbjct: 809  AYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVL 868

Query: 424  PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
            P ++HYGC+V LLGRA   +E+   I  MP PPD ++W +LL ACR H N+ LAEHA  +
Sbjct: 869  PTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANN 928

Query: 484  LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
              + +  N   ++LL+N+YA AGR DD+++IR  +   G++K+ G S IE    +H+F +
Sbjct: 929  ALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIA 988

Query: 544  GDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGL 587
             D  +P + EIY  L  + + +++ G                QETSL  H ERLA+A+GL
Sbjct: 989  ADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGL 1048

Query: 588  ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            I T   T IRI  NLRICGDCH+  K  S++  REI+ RD+ RFH F+ G+CSC DYW
Sbjct: 1049 IKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/499 (21%), Positives = 210/499 (42%), Gaps = 77/499 (15%)

Query: 35  ANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
           A   P  +  I +  +C S  E E   +IHS +I     RDP++   +       GDL  
Sbjct: 122 AGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPR 181

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLN---- 138
           A+Q+       ++  +N+++       Y +E   ++  +         VT   LL+    
Sbjct: 182 ARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTT 241

Query: 139 ----------------------------------KCGKLKEVCQLFDKLPNRDVISWNTM 164
                                             +CG +    Q F    +RDV+ +N +
Sbjct: 242 PSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNAL 301

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           I+     G   E      +M ++GV+ +  T +S+++A +  + LE GK +H  + E   
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
                + N L+ MY +CG + +A++L   Y + + D++ W  +++GY +  +R EA RL+
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELF--YTMPKRDLISWNAIIAGYARREDRGEAMRLY 419

Query: 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------ 338
            +M    +    +    +L+        +CA+  A   G  +H  I ++ I  +      
Sbjct: 420 KQMQSEGVKPGRVTFLHLLS--------ACANSSAYADGKMIHEDILRSGIKSNGHLANA 471

Query: 339 ---------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                    ++  A ++F     ++V  W S+IA +A  G  + A  LF EM+    +PD
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPD 531

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            +TF ++LS C +   ++ G     + +    ++  +     ++++  R G L+++ N  
Sbjct: 532 NITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 450 TSMPIPPDVSIWSSLLRAC 468
            S+    DV  W++++  C
Sbjct: 591 HSLQ-HRDVMSWTAMIGGC 608



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/502 (22%), Positives = 209/502 (41%), Gaps = 76/502 (15%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           + E +RIH+ ++   +  D  +S  +    V    +  A Q+ ++    ++  WNS+I  
Sbjct: 43  LPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISC 102

Query: 114 QLINGYPQEVFAI---------------YLYLVTRTV----------------------- 135
               G+ ++ F +               Y+ ++T                          
Sbjct: 103 YAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRD 162

Query: 136 ---------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                    +  KCG L    Q+F  +  RDV+S+NTM+  Y      +E LGL  +M +
Sbjct: 163 PRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSS 222

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           EG+SPD+VT ++L+ A T    L+ GK +H    E  +     +   LV M  +CG +  
Sbjct: 223 EGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDS 282

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A++        + DVV++  L++   +     EA   +  M    +         +LN  
Sbjct: 283 AKQAF--KGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN-- 338

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +C++  AL  G  +H +I ++  S D               ++  A +LF  + 
Sbjct: 339 ------ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           ++++  W ++IA YA      +A+ L+ +M+  G KP +VTF+ LLSAC++     +G  
Sbjct: 393 KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-K 451

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            + +      IK        ++++  R G L E+ N         DV  W+S++     H
Sbjct: 452 MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMIAGHAQH 510

Query: 472 QNVKLAEHAFKHLT--ETDPLN 491
            + + A   F+ +   E +P N
Sbjct: 511 GSYETAYKLFQEMQNEELEPDN 532



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 162/359 (45%), Gaps = 30/359 (8%)

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           +  T V+L+   T+ R L   K +H  + E+ +     L N L++MY KC  + +A ++ 
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
              E+   DV+ W +L+S Y +   + +A +LF+EM     I   +    +L        
Sbjct: 86  --KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILT------- 136

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVY 356
            +C S   L +G  +H  I K     D               ++  A  +F+ IS ++V 
Sbjct: 137 -ACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVV 195

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            + +++  YA   + ++ + LF +M   G  PD+VT+I LL A +   ++DEG   + K 
Sbjct: 196 SYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG-KRIHKL 254

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH-QNVK 475
           +    +   ++    +V +  R G + +SA          DV ++++L+ A   H  NV+
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDV-DSAKQAFKGTADRDVVVYNALIAALAQHGHNVE 313

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK--QLGYSLI 532
             E  ++  ++   LN   ++ + N  + +  L+    I   + + G     Q+G +LI
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALI 372



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 61/240 (25%)

Query: 36  NVCPVSLDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           +V P     + +  +CSS   ++E +R+H+ ++   L  D ++   +       G  G A
Sbjct: 729 DVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEA 788

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152
           Q++     E  +  WN+     +IN Y Q                               
Sbjct: 789 QEVFDNIIEKNVVTWNA-----MINAYAQH------------------------------ 813

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
                              G+  + LG  + M  EG+ PD  T  S++SA      +  G
Sbjct: 814 -------------------GLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEG 854

Query: 213 KNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
             +   + ES   +  ++ +Y  LV +  +  +  EA+ L+ +      D  +W TL+  
Sbjct: 855 YQIFSSM-ESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPP-DAAVWETLLGA 912


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 312/565 (55%), Gaps = 40/565 (7%)

Query: 111 IENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC--QLFDKLPNRDVISWNTMISCY 168
           I N LIN Y +   A  ++ V       K G+    C  ++FD +P RDV+SWNT+I+ +
Sbjct: 147 IANALINTYAKFHNAGKVFDV-----FPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGF 201

Query: 169 TSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
              GMY E L ++ +MG  G + PD  T+ S++    +  D+  GK +H +   +     
Sbjct: 202 AQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGD 261

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             + + L+DMY KC ++     L   Y +   D + W ++++G V++ E D     F  M
Sbjct: 262 VFIGSSLIDMYAKCNRL--ECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRM 319

Query: 288 VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI----------SI 337
           ++ N+    +  S ++   A     +  S+G   HG  V +    N+             
Sbjct: 320 LKENVKPMAVSFSSVIPACAHL---TALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKC 376

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
            NI++A  +F  I ++++  WT++I   AM GHA  A+ LF  M E G +P  V F+A+L
Sbjct: 377 GNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVL 436

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP 456
           +ACSH GLVDEG+ + +   R + I P ++HY  + DLLGRAG LEE+ +FI++M  + P
Sbjct: 437 TACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQP 496

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
             S+WS LL ACR H++V+LAE     L   D  N GA+VL++NIY+ A R  D +R+R+
Sbjct: 497 TGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRI 556

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------ 570
            +R  GLKK    S IE G  VH F +GD  +P+ ++I   L+ +   ++++G       
Sbjct: 557 HMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQ 616

Query: 571 ----------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                     +E    H ERLA+A+G+IST+  TTIR++ N+R+C DCH+ +K  +++  
Sbjct: 617 VLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVG 676

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           REI +RDN RFH F+ G CSC DYW
Sbjct: 677 REITVRDNSRFHHFKNGSCSCGDYW 701



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 150/365 (41%), Gaps = 57/365 (15%)

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           +W+++I CYTS  +        + M +  V P+     SL+ A T L+  ++  +LH   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 220 EESTMKISGSLLNYLVDMYFK---CGKIGEAQKLLGRYEIDEV----------DVVLWTT 266
               +     + N L++ Y K    GK+ +     G   ID V          DVV W T
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 267 LVSGYVKSNERDEARRLFDEMVERN-LISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
           +++G+ ++    EA  +  EM +   L   +  +S +L   AE       + G   HG  
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAE---HVDVNKGKEIHGYA 253

Query: 326 VH------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           V       V+I  + I +    + +E +   F  +  K+   W S+IA     G   + +
Sbjct: 254 VRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGL 313

Query: 376 DLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYD---FLSKKSRVYN 421
             F  M +   KP  V+F +++ AC+           HG +V  G+D   F++       
Sbjct: 314 GFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASS----- 368

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
                     +VD+  + G++ + A ++       D+  W++++  C  H +   A   F
Sbjct: 369 ----------LVDMYAKCGNI-KMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLF 417

Query: 482 KHLTE 486
           +++ E
Sbjct: 418 ENMLE 422


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 217/682 (31%), Positives = 342/682 (50%), Gaps = 99/682 (14%)

Query: 49  RSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           ++C+S  ++E    I S  +   + ++  + + +  FLV  G +G AQ++       ++ 
Sbjct: 138 KACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVV 197

Query: 106 IWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCGKLKEV----CQ---- 148
            WNSII   +  G     F ++  +         +T T L+  CG +  +    C     
Sbjct: 198 CWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYV 257

Query: 149 ------------------------------LFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                                         +F K+P R+++SWN MIS     G+  E  
Sbjct: 258 LGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESF 317

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH---LFLEESTMKISGSLLNYLV 235
            L  ++       D  T+VSL+   ++   L  GK LH   +   ES + +S ++    V
Sbjct: 318 DLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAI----V 373

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           D+Y KCG + +A  +  R  + + +V+ WT ++ G  ++   ++A RLF +M E  + + 
Sbjct: 374 DLYSKCGSLKQATFVFNR--MKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAAN 431

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NI 340
           ++    +++        SCA +G+L  G  +H ++ +   + D                I
Sbjct: 432 SVTFVSLVH--------SCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKI 483

Query: 341 ELAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
            LA  +FS  S  K+V LW S+I  Y M GH  +A+ ++ +M E G KP+Q TF++LLSA
Sbjct: 484 NLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSA 543

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           CSH  LV++G    +   R +NI+P  +HY C+VDLL RAG  EE+   I  MP  P  +
Sbjct: 544 CSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTA 603

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           +  +LL  CR H+N+ L       L   D +N G +++L+NIYA+A R D +  IR  +R
Sbjct: 604 VLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMR 663

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL--- 575
           + GLKK  GYSL+E G +VH F +GD  +P+ EEIY  L  +   ++  G + +TS    
Sbjct: 664 NRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLR 723

Query: 576 ------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
                        H ERLA+AFGL++T   + IRI  NLR+CGDCH+  K  S++  REI
Sbjct: 724 DVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREI 783

Query: 624 VIRDNGRFHRFQGGQCSCRDYW 645
           ++RD  RFH F  G+CSC DYW
Sbjct: 784 IVRDANRFHHFSNGECSCGDYW 805



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 164/395 (41%), Gaps = 37/395 (9%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD+      +  N M+  Y   G YRE L L   M +  +  D  +    + A     D
Sbjct: 86  VFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLD 145

Query: 209 LEMGKNLHLFLEESTMK----ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
            EMG  +     E  M+    +  S++++LV    K GKIGEAQ++     +   DVV W
Sbjct: 146 YEMGMEIISSAVEKGMEKNRFVGSSMISFLV----KFGKIGEAQRVFD--GMPNKDVVCW 199

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324
            +++ GYV++   D A +LF EM    +    + ++ ++        ++C  IG L  G 
Sbjct: 200 NSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLI--------QACGGIGNLKLGK 251

Query: 325 WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
            +H Y+    +  D               +IE A  +F ++  +N+  W ++I+     G
Sbjct: 252 CMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNG 311

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
              ++ DLF  +  +    D  T ++LL  CS    +  G   +     + + +  +   
Sbjct: 312 LVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGK--ILHGCAIRSFESNLILS 369

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD- 488
             +VDL  + G L++ A F+ +     +V  W+++L     + + + A   F  + E   
Sbjct: 370 TAIVDLYSKCGSLKQ-ATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGI 428

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
             N    V L +  A  G L     I   L  +G 
Sbjct: 429 AANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGF 463


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/543 (36%), Positives = 302/543 (55%), Gaps = 45/543 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           LL+ C  +    Q+F ++ N ++ +WNTMI  Y         L L  +M    + PD  T
Sbjct: 83  LLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHT 142

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
              L+ A  KL D+  G+ +H     +  +    + N LV MY  CG    A KL     
Sbjct: 143 YPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFEL-- 200

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + E ++V W ++++GY  +   +EA  LF EM  R +      +  +L+        +CA
Sbjct: 201 MAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLS--------ACA 252

Query: 316 SIGALYHGIWVHVYIKKNQISID-----------------NIELAYDLFSEISEKNVYLW 358
            +GAL  G   HVY+ K  + +D                 +I  A+ +F E+ EK+V  W
Sbjct: 253 ELGALALGRRAHVYMVK--VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSW 310

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           TS+I   A+ G  ++A++LF E+E  G  P ++TF+ +L ACSH G+VDEG+D+  +   
Sbjct: 311 TSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKE 370

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            Y I PK++HYGCMVDLLGRAG ++++  FI +MP+ P+  +W +LL AC  H ++ L E
Sbjct: 371 EYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGE 430

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A   L + +P + G +VLL+N+YA   R  D+ ++R  +   G+KK  G+SL+E    +
Sbjct: 431 VARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRL 490

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLA 582
           H+F  GD  +P +EEIY+ L EI   L+ +G                +ET+L  H E++A
Sbjct: 491 HEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIA 550

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           +AF LI+T+    IR+V NLR+C DCH  +K+ S+V++REIV+RD  RFH F+ G CSC+
Sbjct: 551 IAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCK 610

Query: 643 DYW 645
           DYW
Sbjct: 611 DYW 613


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 303/552 (54%), Gaps = 57/552 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F ++ N ++  +N +I C+++     +  G  ++M    + PD +T   LI A T++  
Sbjct: 75  IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMEC 134

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           + +G+  H  +     +    + N LV MY  CG I  A ++ G+      DVV WT++V
Sbjct: 135 VVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFR--DVVSWTSMV 192

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------------------ 310
           +GY K    ++AR +FDEM  RNL +W++MI+G    +   K                  
Sbjct: 193 AGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANET 252

Query: 311 -----YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEI 350
                  SCA +GAL  G   H Y+ K+ ++++                IE A  +F E+
Sbjct: 253 VMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEEL 312

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            +K+   W+S+I   A+ GHA KAI  F +M   G  P  +T  A+LSACSHGGLVD+G 
Sbjct: 313 PDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGL 372

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
           +      R Y I+P+++HYGC+VD+LGRAG L E+ NFI  MP+ P+  I  +LL AC+ 
Sbjct: 373 EIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKI 432

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           ++N ++AE     L E  P + G +VLL+NIYA AG+ + +  +R  +++  +KK  G+S
Sbjct: 433 YKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWS 492

Query: 531 LIEQGGFVHKFTSG-DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETS 574
           LIE  G ++KF+ G D  +P   +I  +  EI   ++  G                +ET+
Sbjct: 493 LIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETA 552

Query: 575 LQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
           +  H E+LA+A+G++ T   TTIRIV NLR+C DCH+  K+ S+VY RE ++RD  RFH 
Sbjct: 553 IHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHH 612

Query: 634 FQGGQCSCRDYW 645
           F+ G CSCRDYW
Sbjct: 613 FRNGLCSCRDYW 624



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 7/163 (4%)

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           AY +FS+I   N++++  +I  ++      KA   + +M ++   PD +TF  L+ A + 
Sbjct: 72  AYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTE 131

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
              V  G    S+  R +  +  +     +V +    G +  +      MP   DV  W+
Sbjct: 132 MECVVVGEQTHSQIVR-FGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPF-RDVVSWT 189

Query: 463 SLLRA-CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504
           S++   C+C     + E A +   E    N     ++ N YAK
Sbjct: 190 SMVAGYCKC----GMVEDAREMFDEMPHRNLFTWSIMINGYAK 228


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 199/584 (34%), Positives = 309/584 (52%), Gaps = 51/584 (8%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           W   +  ++I   PQ    I  Y+ +  + L  KCG  KE  ++F+ L +R+ +SW  +I
Sbjct: 278 WGKQLHAKVIRSLPQ----IDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLI 333

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
                   + + + L ++M AE ++ D+  + +LIS      DL +G+ LH    +S   
Sbjct: 334 GGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHN 393

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  + N L+ +Y KCG +  A+ +     + E D+V WT++++ Y +     +AR  FD
Sbjct: 394 RAIVVSNSLISLYAKCGDLQNAEFVFS--SMSERDIVSWTSMITAYSQIGNIIKAREFFD 451

Query: 286 EMVERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGA-- 319
            M  RN I+W  M+   +   AE                          ++ CA IGA  
Sbjct: 452 GMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANK 511

Query: 320 ---------LYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                    +  G+ ++V +    I++      I  A  LF  ++ K+V  W ++I  Y+
Sbjct: 512 LGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYS 571

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++A   F +M   G KPD ++++A+LS CSH GLV EG  +    +RV+ I P +
Sbjct: 572 QHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGL 631

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+ CMVDLLGRAGHL E+ + I  MP+ P   +W +LL AC+ H N +LAE A KH+ E
Sbjct: 632 EHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFE 691

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D  + G+++LLA IY+ AG+ DD +++R  +RD G+KK  GYS +E    VH F + D+
Sbjct: 692 LDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDV 751

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQET-----SLQHRERLAVAFGLISTSEKTTIRIVNN 601
            +P    I   ++E+   +   G   T      + H E+LAVAFG++S      I I+ N
Sbjct: 752 SHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKN 811

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LRICGDCH+ +K+ S V +RE VIRD  RFH F+ G CSC DYW
Sbjct: 812 LRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 195/452 (43%), Gaps = 71/452 (15%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131
           DP + T + +  V  G + +A ++  Q + P I        N ++ GY +      LY +
Sbjct: 162 DPDVETALVDMFVRCGYVDFASRLFSQIERPTI-----FCRNSMLAGYAK------LYGI 210

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
              +            + F+ +  RDV+SWN MI+  +  G  RE LGL+ +M  +GV  
Sbjct: 211 DHAI------------EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRL 258

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T  S ++A  +L  L  GK LH  +  S  +I   + + L+++Y KCG   EA+++ 
Sbjct: 259 DSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVF 318

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA 307
               + + + V WT L+ G ++     ++  LF++M    +  +  +   +ISG  N+  
Sbjct: 319 N--SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 376

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
               +   S+  L  G    + +  + IS+     +++ A  +FS +SE+++  WTS+I 
Sbjct: 377 LCLGRQLHSL-CLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMIT 435

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           AY+  G+  KA + F  M       + +T+ A+L A    G  ++G              
Sbjct: 436 AYSQIGNIIKAREFFDGM----ATRNAITWNAMLGAYIQHGAEEDG-------------- 477

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
             ++ Y  M                ++   + PD   + +L R C      KL +    H
Sbjct: 478 --LKMYSAM----------------LSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH 519

Query: 484 LTETD-PLNDGAHVLLANIYAKAGRLDDMSRI 514
             +    LN         +Y+K GR+ +  ++
Sbjct: 520 TVKAGLILNVSVANAAITMYSKCGRISEAQKL 551



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 187/467 (40%), Gaps = 106/467 (22%)

Query: 49  RSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           RSC S   +     +H  L+T  L     +   +    +  G L  A++++R     +IK
Sbjct: 28  RSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLR----ADIK 83

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
             N I  N ++NGY ++                  G L +  +LFD++P RDV SWNT++
Sbjct: 84  EPNVITHNIMMNGYAKQ------------------GSLSDAEELFDRMPRRDVASWNTLM 125

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           S  +         G L   G   ++P  + +                     F  +  ++
Sbjct: 126 SDTSRPAGSWMSCGAL---GCRELAPQLLGLFWKFD----------------FWGDPDVE 166

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +      LVDM+ +CG +  A +L    +I+   +    ++++GY K    D A   F+
Sbjct: 167 TA------LVDMFVRCGYVDFASRLFS--QIERPTIFCRNSMLAGYAKLYGIDHAIEYFE 218

Query: 286 EMVERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGALY 321
           +M ER+++SW +MI+  L+Q    +                          +CA + +L 
Sbjct: 219 DMAERDVVSWNMMIAA-LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLG 277

Query: 322 HGIWVHVYIKKNQISIDN------IEL---------AYDLFSEISEKNVYLWTSVIAAYA 366
            G  +H  + ++   ID       IEL         A  +F+ + ++N   WT +I    
Sbjct: 278 WGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSL 337

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
                 K+++LF +M       DQ     L+S C +   +D     L    +++++  K 
Sbjct: 338 QYECFSKSVELFNQMRAELMAIDQFALATLISGCFN--RMD-----LCLGRQLHSLCLKS 390

Query: 427 QH------YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
            H         ++ L  + G L ++A F+ S     D+  W+S++ A
Sbjct: 391 GHNRAIVVSNSLISLYAKCGDL-QNAEFVFSSMSERDIVSWTSMITA 436


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 194/540 (35%), Positives = 307/540 (56%), Gaps = 52/540 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L++V   F+ +P RD++SWNT+IS     GM+ + L ++ +MG   + PD  T+ S++
Sbjct: 187 GSLRKV---FEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 243

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
               +  +L  GK +H +   +       + + L+DMY KC ++ ++ ++   Y + + D
Sbjct: 244 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF--YMLPQHD 301

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + W ++++G V++   DE  + F +M    ++ N +S++ ++             +CA 
Sbjct: 302 GISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMP------------ACAH 349

Query: 317 IGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSV 361
           +  L+ G  +H YI +++           +D      NI  A  +F ++   ++  WT++
Sbjct: 350 LTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAM 409

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I  YA+ GHA  AI LF  ME  G KP+ V F+A+L+ACSH GLVDE + + +  ++ Y 
Sbjct: 410 IMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYR 469

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I P ++HY  + DLLGR G LEE+  FI+ M I P  S+WS+LL ACR H+N++LAE   
Sbjct: 470 IIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVS 529

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           K L   DP N GA+VLL+NIY+ AGR  D  ++R+ +RD G+KK+   S IE    VH F
Sbjct: 530 KKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAF 589

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQG--LQETSL--------------QHRERLAVAF 585
            +GD  +P+ + I   L  +   ++++G  L  T +               H ERLA+ F
Sbjct: 590 VAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITF 649

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           G+IST   TTIR+  NLR+C DCH+  K  S++  REIV+RDN RFH F+ G+CSC D+W
Sbjct: 650 GIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 127/257 (49%), Gaps = 15/257 (5%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           NGY  +VF I   L+    +  KC ++ + C++F  LP  D ISWN++I+     GM+ E
Sbjct: 265 NGYDADVF-IGSSLID---MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDE 320

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
           GL    +M    + P+ V+  S++ A   L  L +GK LH ++  S    +  + + LVD
Sbjct: 321 GLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVD 380

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNL 292
           MY KCG I  A+ +  + E+   D+V WT ++ GY       +A  LF  M    V+ N 
Sbjct: 381 MYAKCGNIRTARWIFDKMEL--YDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNY 438

Query: 293 ISWTLMISGMLNQ---DAEFKY-KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFS 348
           +++  +++   +    D  +KY  S      +  G+  +  +      +  +E AY+  S
Sbjct: 439 VAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFIS 498

Query: 349 EIS-EKNVYLWTSVIAA 364
           ++  E    +W++++AA
Sbjct: 499 DMHIEPTGSVWSTLLAA 515



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 157/380 (41%), Gaps = 55/380 (14%)

Query: 149 LFDKLPNRDV-ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +F+ LP+    ++W ++I CYTS G++   L    +M A G  PD     S++ + T ++
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY-EIDEVDVVLWTT 266
           DL  G+++H  +    M       N L++MY K   + E       + E    DV     
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA--------------- 307
             S Y+ S      R++F+ M +R+++SW  +ISG     +++DA               
Sbjct: 181 KESYYLGS-----LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPD 235

Query: 308 EFKYKSCASIGALY----HGIWVHVYIKKNQISID---------------NIELAYDLFS 348
            F   S   I A Y     G  +H Y  +N    D                ++ +  +F 
Sbjct: 236 SFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFY 295

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            + + +   W S+IA     G   + +  F +M     KP+ V+F +++ AC+H   +  
Sbjct: 296 MLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLH- 354

Query: 409 GYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
               L K+   Y I+ +          +VD+  + G++  +      M +   VS W+++
Sbjct: 355 ----LGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVS-WTAM 409

Query: 465 LRACRCHQNVKLAEHAFKHL 484
           +     H +   A   FK +
Sbjct: 410 IMGYALHGHAYDAISLFKRM 429


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 199/584 (34%), Positives = 309/584 (52%), Gaps = 51/584 (8%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           W   +  ++I   PQ    I  Y+ +  + L  KCG  KE  ++F+ L +R+ +SW  +I
Sbjct: 288 WGKQLHAKVIRSLPQ----IDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLI 343

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
                   + + + L ++M AE ++ D+  + +LIS      DL +G+ LH    +S   
Sbjct: 344 GGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHN 403

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  + N L+ +Y KCG +  A+ +     + E D+V WT++++ Y +     +AR  FD
Sbjct: 404 RAIVVSNSLISLYAKCGDLQNAEFVFS--SMSERDIVSWTSMITAYSQIGNIIKAREFFD 461

Query: 286 EMVERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGA-- 319
            M  RN I+W  M+   +   AE                          ++ CA IGA  
Sbjct: 462 GMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANK 521

Query: 320 ---------LYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                    +  G+ ++V +    I++      I  A  LF  ++ K+V  W ++I  Y+
Sbjct: 522 LGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYS 581

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++A   F +M   G KPD ++++A+LS CSH GLV EG  +    +RV+ I P +
Sbjct: 582 QHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGL 641

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+ CMVDLLGRAGHL E+ + I  MP+ P   +W +LL AC+ H N +LAE A KH+ E
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFE 701

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D  + G+++LLA IY+ AG+ DD +++R  +RD G+KK  GYS +E    VH F + D+
Sbjct: 702 LDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDV 761

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQET-----SLQHRERLAVAFGLISTSEKTTIRIVNN 601
            +P    I   ++E+   +   G   T      + H E+LAVAFG++S      I I+ N
Sbjct: 762 SHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKN 821

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LRICGDCH+ +K+ S V +RE VIRD  RFH F+ G CSC DYW
Sbjct: 822 LRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 195/452 (43%), Gaps = 71/452 (15%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131
           DP + T + +  V  G + +A ++  Q + P I        N ++ GY +      LY +
Sbjct: 172 DPDVETALVDMFVRCGYVDFASRLFSQIERPTI-----FCRNSMLAGYAK------LYGI 220

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
              +            + F+ +  RDV+SWN MI+  +  G  RE LGL+ +M  +GV  
Sbjct: 221 DHAI------------EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRL 268

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T  S ++A  +L  L  GK LH  +  S  +I   + + L+++Y KCG   EA+++ 
Sbjct: 269 DSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVF 328

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA 307
               + + + V WT L+ G ++     ++  LF++M    +  +  +   +ISG  N+  
Sbjct: 329 N--SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
               +   S+  L  G    + +  + IS+     +++ A  +FS +SE+++  WTS+I 
Sbjct: 387 LCLGRQLHSL-CLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMIT 445

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           AY+  G+  KA + F  M       + +T+ A+L A    G  ++G              
Sbjct: 446 AYSQIGNIIKAREFFDGM----ATRNAITWNAMLGAYIQHGAEEDG-------------- 487

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
             ++ Y  M                ++   + PD   + +L R C      KL +    H
Sbjct: 488 --LKMYSAM----------------LSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH 529

Query: 484 LTETD-PLNDGAHVLLANIYAKAGRLDDMSRI 514
             +    LN         +Y+K GR+ +  ++
Sbjct: 530 TVKAGLILNVSVANAAITMYSKCGRISEAQKL 561



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 193/468 (41%), Gaps = 82/468 (17%)

Query: 49  RSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           RSC S   +     +H  L+T  L     +   +    +  G L  A++++R     +IK
Sbjct: 12  RSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLR----ADIK 67

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
             N I  N ++NGY ++                  G L +  +LFD++P RDV SWNT++
Sbjct: 68  EPNVITHNIMMNGYAKQ------------------GSLSDAEELFDRMPRRDVASWNTLM 109

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           S Y     + +GL     M   G S P+  T   ++ +   L   E+   L     +   
Sbjct: 110 SGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDF 169

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
                +   LVDM+ +CG +  A +L    +I+   +    ++++GY K    D A   F
Sbjct: 170 WGDPDVETALVDMFVRCGYVDFASRLFS--QIERPTIFCRNSMLAGYAKLYGIDHAIEYF 227

Query: 285 DEMVERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGAL 320
           ++M ER+++SW +MI+  L+Q    +                          +CA + +L
Sbjct: 228 EDMAERDVVSWNMMIAA-LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 286

Query: 321 YHGIWVHVYIKKNQISIDN------IEL---------AYDLFSEISEKNVYLWTSVIAAY 365
             G  +H  + ++   ID       IEL         A  +F+ + ++N   WT +I   
Sbjct: 287 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 346

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
                  K+++LF +M       DQ     L+S C +   +D     L    +++++  K
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN--RMD-----LCLGRQLHSLCLK 399

Query: 426 MQH------YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
             H         ++ L  + G L ++A F+ S     D+  W+S++ A
Sbjct: 400 SGHNRAIVVSNSLISLYAKCGDL-QNAEFVFSSMSERDIVSWTSMITA 446



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 169/397 (42%), Gaps = 70/397 (17%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++HS  + +   R   +S  +       GDL  A+ +     E +I  W S     +I  
Sbjct: 392 QLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS-----MITA 446

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           Y Q                   G + +  + FD +  R+ I+WN M+  Y   G   +GL
Sbjct: 447 YSQ------------------IGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGL 488

Query: 179 GLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
            + S M   + V+PD VT V+L      +   ++G  +     ++ + ++ S+ N  + M
Sbjct: 489 KMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITM 548

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLI 293
           Y KCG+I EAQKL     ++  DVV W  +++GY +     +A + FD+M+ +    + I
Sbjct: 549 YSKCGRISEAQKLFDL--LNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYI 606

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
           S+  ++SG            C+  G +  G                 +L +D+ + +   
Sbjct: 607 SYVAVLSG------------CSHSGLVQEG-----------------KLYFDMMTRVHGI 637

Query: 354 NVYL--WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-HGGLVDEGY 410
           +  L  ++ ++     AGH  +A DL  +M     KP    + ALLSAC  HG   DE  
Sbjct: 638 SPGLEHFSCMVDLLGRAGHLTEAKDLIDKMP---MKPTAEVWGALLSACKIHGN--DELA 692

Query: 411 DFLSKKSRVYNI-KPKMQHYGCMVDLLGRAGHLEESA 446
           +  +K   V+ +  P    Y  +  +   AG  ++SA
Sbjct: 693 ELAAK--HVFELDSPDSGSYMLLAKIYSDAGKSDDSA 727


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 189/520 (36%), Positives = 294/520 (56%), Gaps = 56/520 (10%)

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  +MG   ++P+  T   L    +     ++G+  H  + +++ ++   + N ++  Y 
Sbjct: 79  LFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYS 138

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
            CG++ +A+ +    E  E+DVV W +++ G +++    EA  LF +M ERN ISW +MI
Sbjct: 139 VCGRLNDARWVFD--ESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMI 196

Query: 300 SG------------------MLNQDAEFK-----YKSCASIGALYHGIWVHVYIKKNQIS 336
           SG                  ML+Q+           +C+ +GAL HG WVH YI K  + 
Sbjct: 197 SGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVR 256

Query: 337 IDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
           +D+I               +LA   FS   +++V  +T+ I+  AM G +++A+ LF +M
Sbjct: 257 VDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQM 316

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
           +  G  PD V++IA+L ACSH G V++G+ + +  S V+ I+P++ HY CMVDLLGRAG 
Sbjct: 317 KGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGL 376

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           LEE+  F+ SMPI PD  IW +LL ACR + N ++ +     L E+D  +DG ++LL+NI
Sbjct: 377 LEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNI 436

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           YA++ + +D  ++R  +R   + +  G SLIE  GFVH+F SGD  +  +EEIYLM  EI
Sbjct: 437 YAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEI 496

Query: 562 EMTLQQQGLQETSL----------------QHRERLAVAFGLISTSEKTTIRIVNNLRIC 605
              +++ G +E +                  H E+LAVAFG + T   +T+RIV N+RIC
Sbjct: 497 VKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRIC 556

Query: 606 GDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            DCH  +K+ S+V+ R+I IRD   FH F+ G CSC+DYW
Sbjct: 557 SDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 126/347 (36%), Gaps = 91/347 (26%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           +C + D   + H  +I  +   D  +   +  F    G L  A+ +  +  E ++  WNS
Sbjct: 104 NCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNS 163

Query: 110 IIE--------------------------NQLINGY-----PQEVFAIY----------- 127
           +I+                          N +I+GY     P+E  A++           
Sbjct: 164 MIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPN 223

Query: 128 ------------------------LYLVTRTVLLN------------KCGKLKEVCQLFD 151
                                    Y+  + V ++            KCG +    Q F 
Sbjct: 224 SAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFS 283

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
               RDV ++   IS     G   E L L  +M  EG+SPD V+ ++++ A +    +E 
Sbjct: 284 TSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVE- 342

Query: 212 GKNLHLFLEESTMK-ISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            K  H F   S +  I   L +Y  +VD+  + G + EA+K +    I + D V+W  L+
Sbjct: 343 -KGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPI-KPDNVIWGALL 400

Query: 269 SGYVKSNERDEARRLFDEMVE-------RNLISWTLMISGMLNQDAE 308
                    +  +R+   +VE       R ++   +    M  +DAE
Sbjct: 401 GACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAE 447


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 202/596 (33%), Positives = 330/596 (55%), Gaps = 55/596 (9%)

Query: 94  QIIRQGDEPEIKIWNSIIE-----NQLINGYPQEVFAIYLYLVTRTVLLN-------KCG 141
           ++++ G  P+     S++       +LING     +A+   L +   + N       KC 
Sbjct: 355 EMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCY 414

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            ++   ++FD++  +D +SW T+I+CY     Y E +G       EG+  D + M S++ 
Sbjct: 415 SVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILE 474

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
           A + L+ + + K +H +   + + +   L N ++D+Y +CG++  A  +     +D+ D+
Sbjct: 475 ACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIF--EMLDKKDI 531

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
           V WT++V+ + ++    EA  LF +M+   +   ++ + G+L         + A + +L 
Sbjct: 532 VTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILG--------AIAGLSSLT 583

Query: 322 HGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
            G  +H ++ + +  ++               ++  A  +F E   K+V LWT++I A  
Sbjct: 584 KGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATG 643

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
           M GH ++AI +F  M ETG  PD V+F+ALL ACSH  LVDEG  +L      Y ++P  
Sbjct: 644 MHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQ 703

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HY C+VDLLGR+G  EE+  FI SMP+ P   +W +LL ACR H+N +LA  A   L E
Sbjct: 704 EHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLE 763

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            +P N G +VL++N++A+ G+ +++  IR K+ + GL+K    S IE G  VH FT+ D 
Sbjct: 764 LEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDH 823

Query: 547 FNPHSEEIYLMLNEIEMTLQQQG--LQETSL---------------QHRERLAVAFGLIS 589
            +  S+ I+L L EI   L+++G  +++TS                +H ERLA++FGLIS
Sbjct: 824 SHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLIS 883

Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           T+  T +RI  NLR+CGDCH F K+ S+++ REIV+RD  RFH F GG CSC D+W
Sbjct: 884 TASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 162/363 (44%), Gaps = 39/363 (10%)

Query: 129 YLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           +L T+ + +  KCG+L +  +LFD +P R V SWN +I    S G   E +G+   M A 
Sbjct: 94  FLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRAS 153

Query: 188 ----GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
               G +PD  T+ S++ A     D   G  +H    +S +  S  + N LV MY KCG 
Sbjct: 154 EPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGL 213

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           +  A ++   +  D  DV  W + +SG V++    EA  LF  M        +    G+L
Sbjct: 214 LDSALRVF-EWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVL 272

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN--------------IELAYDLFSE 349
                   + CA +  L HG  +H  + K     +               ++ A  +F E
Sbjct: 273 --------QVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFRE 324

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           I +K+   W S+++ Y       +AID F EM + G  PD    ++LLSA  H G +  G
Sbjct: 325 IGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING 384

Query: 410 YDFLSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
                ++   Y +K +    +Q    ++D+  +   +E SA     M I   VS W++++
Sbjct: 385 -----REVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVS-WTTII 438

Query: 466 RAC 468
            AC
Sbjct: 439 -AC 440



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 200/497 (40%), Gaps = 93/497 (18%)

Query: 42  LDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE 101
           LD++ V R+   + E  ++H+H + T  + D        + L   G  G      R  D 
Sbjct: 62  LDLVAVRRA---VSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDG 118

Query: 102 PEIKI---WNSIIENQLINGYPQEVFAIYLYL---------------------------- 130
              +    WN++I   L +G   E   +Y  +                            
Sbjct: 119 MPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGD 178

Query: 131 ---------------VTRTVLLN--------KCGKLKEVCQLFDKLPN-RDVISWNTMIS 166
                          + R+ L+         KCG L    ++F+ + + RDV SWN+ IS
Sbjct: 179 GRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAIS 238

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
                GM+ E L L  +M ++G S +  T V ++    +L  L  G+ LH  L +   + 
Sbjct: 239 GCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEF 298

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           +    N L+ MY +CG +  A ++    EI + D + W +++S YV++    EA   F E
Sbjct: 299 NIQ-CNALLVMYARCGWVDSALRVF--REIGDKDYISWNSMLSCYVQNRLYAEAIDFFGE 355

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------- 338
           MV+         I  +L+        +   +G L +G  VH Y  K ++  D        
Sbjct: 356 MVQNGFNPDHACIVSLLS--------AVGHLGRLINGREVHAYAVKQRLDSDLQIANTLM 407

Query: 339 -------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                  ++E +  +F  +  K+   WT++IA YA +    +AI  F   ++ G K D +
Sbjct: 408 DMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPM 467

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY---GCMVDLLGRAGHLEESANF 448
              ++L ACS  GL       L K+   Y I+  +        ++D+ G  G +  + N 
Sbjct: 468 MMGSILEACS--GLKSIS---LLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALN- 521

Query: 449 ITSMPIPPDVSIWSSLL 465
           I  M    D+  W+S++
Sbjct: 522 IFEMLDKKDIVTWTSMV 538


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 192/491 (39%), Positives = 287/491 (58%), Gaps = 42/491 (8%)

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           + + PDEVTMVSL+ A  +L +LE GK LH + +E  +  + S+ N ++DMY KC  I  
Sbjct: 5   DNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIES 64

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           AQ++  R  I E DV+ WT+++SG  KS    E+  LF +M    +    + + G+L+  
Sbjct: 65  AQEVFNR--IREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLS-- 120

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +CA  GAL  G ++H+ I K +I+ D               +I+LA  +F  + 
Sbjct: 121 ------ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMR 174

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
            +NV+ W ++I   AM GH + AI LF +ME     PD VTFIALL ACSH GLVDEG  
Sbjct: 175 VRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLA 234

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
                   + I+P+M+HYGC+VDLL RA  ++++  FI +MPI  +  +W++LL ACR  
Sbjct: 235 MFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSG 294

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
            +  LAE   + + E +P + G +V+L+N+YA   + D   ++R ++++ G++K  G S 
Sbjct: 295 GHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSW 354

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE-----------------MTLQQQGLQETS 574
           IE  G +H+F +GD  +  +E+IY M+ E+                    ++++  + + 
Sbjct: 355 IELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSL 414

Query: 575 LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
             H E+LA+A GLIST   + IRIV NLR+C DCHSF+KVTS+VYNREIV RD  RFH F
Sbjct: 415 FLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHF 474

Query: 635 QGGQCSCRDYW 645
           + G CSC D+W
Sbjct: 475 KEGSCSCMDFW 485



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/364 (20%), Positives = 144/364 (39%), Gaps = 74/364 (20%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
           K  N+ P  + ++ +  +C+ +   ER   +HS+     L  +  ++  + +      D+
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY---------------------- 127
             AQ++  +  E ++  W S++     +GY QE  A++                      
Sbjct: 63  ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSAC 122

Query: 128 ----------------------LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWN 162
                                   LV  T L++   KCG +    Q+F ++  R+V +WN
Sbjct: 123 AQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWN 182

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE-E 221
            MI      G   + + L  +M  + + PD+VT ++L+ A +    ++ G  L +F   +
Sbjct: 183 AMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEG--LAMFQAMK 240

Query: 222 STMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
           +  +I   + +Y  +VD+  +  K+ +A   +    I + + VLW TL+         D 
Sbjct: 241 NKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPI-KANSVLWATLLGACRSGGHFDL 299

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI--WVHVYIKKNQISI 337
           A ++   ++E             L  D+  +Y     +  LY G+  W H    + Q+  
Sbjct: 300 AEKIXRRVIE-------------LEPDSCGRY---VMLSNLYAGVSQWDHALKLRKQMKN 343

Query: 338 DNIE 341
             IE
Sbjct: 344 KGIE 347


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 200/584 (34%), Positives = 309/584 (52%), Gaps = 51/584 (8%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           W   +  ++I   PQ    I  Y+ +  + L  KCG  KE  ++F+ L +R+ +SW  +I
Sbjct: 288 WGKQLHAKVIRSLPQ----IDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLI 343

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
                   + + + L ++M AE ++ D+  + +LIS      DL +G+ LH    +S   
Sbjct: 344 GGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHN 403

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  + N L+ +Y KCG +  A+ +     + E D+V WT++++ Y +     +AR  FD
Sbjct: 404 RAIVVSNSLISLYAKCGDLQNAEFVFS--SMSERDIVSWTSMITAYSQIGNIIKAREFFD 461

Query: 286 EMVERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGA-- 319
            M  RN I+W  M+   +   AE                          ++ CA IGA  
Sbjct: 462 GMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANK 521

Query: 320 ---------LYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                    +  G+ ++V +    I++      I  A  LF  ++ K+V  W ++I  Y+
Sbjct: 522 LGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYS 581

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++A   F +M   G KPD ++++A+LS CSH GLV EG  +    +RV+ I P +
Sbjct: 582 QHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGL 641

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+ CMVDLLGRAGHL E+ + I  MP+ P   +W +LL AC+ H N +LAE A KH+ E
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFE 701

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D  + G+++LLA IY+ AG+ DD +++R  +RD G+KK  GYS +E    VH F + D+
Sbjct: 702 LDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDV 761

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQET-----SLQHRERLAVAFGLISTSEKTTIRIVNN 601
            +P    I   L+E+   +   G   T      + H E+LAVAFG++S      I I+ N
Sbjct: 762 SHPQVIAIRNKLDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKN 821

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LRICGDCH+ +K+ S V +RE VIRD  RFH F+ G CSC DYW
Sbjct: 822 LRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 196/452 (43%), Gaps = 71/452 (15%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131
           DP + T + +  V  G + +A ++  Q + P I        N ++ GY +      LY +
Sbjct: 172 DPDVETALVDMFVRCGYVDFASRLFSQIERPTI-----FCRNSMLAGYAK------LYGI 220

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
              +            + F+ +  RDV+SWN MI+  +  G  RE LGL+ +M  +GV  
Sbjct: 221 DHAI------------EYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRL 268

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T  S ++A  +L  L  GK LH  +  S  +I   + + L+++Y KCG   EA+++ 
Sbjct: 269 DSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVF 328

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA 307
               + + + V WT L+ G ++     ++  LF++M    +  +  +   +ISG  N+  
Sbjct: 329 N--SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
               +   S+  L  G    + +  + IS+     +++ A  +FS +SE+++  WTS+I 
Sbjct: 387 LCLGRQLHSL-CLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMIT 445

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           AY+  G+  KA + F  M+      + +T+ A+L A    G  ++G              
Sbjct: 446 AYSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDG-------------- 487

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
             ++ Y  M                ++   + PD   + +L R C      KL +    H
Sbjct: 488 --LKMYSAM----------------LSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGH 529

Query: 484 LTETD-PLNDGAHVLLANIYAKAGRLDDMSRI 514
             +    LN         +Y+K GR+ +  ++
Sbjct: 530 TVKAGLILNVSVANAAITMYSKCGRISEAQKL 561



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 192/468 (41%), Gaps = 82/468 (17%)

Query: 49  RSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           RSC S   +     +H  L+T  L     +   +       G L  A++++R     +IK
Sbjct: 12  RSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLR----ADIK 67

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
             N I  N ++NGY ++                  G L +  +LFD++P RDV SWNT++
Sbjct: 68  EPNVITHNIMMNGYAKQ------------------GSLSDAEELFDRMPRRDVASWNTLM 109

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           S Y     + +GL     M   G S P+  T   ++ +   L   E+   L     +   
Sbjct: 110 SGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDF 169

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
                +   LVDM+ +CG +  A +L    +I+   +    ++++GY K    D A   F
Sbjct: 170 WGDPDVETALVDMFVRCGYVDFASRLFS--QIERPTIFCRNSMLAGYAKLYGIDHAIEYF 227

Query: 285 DEMVERNLISWTLMISGMLNQDAEFK------------------------YKSCASIGAL 320
           ++M ER+++SW +MI+  L+Q    +                          +CA + +L
Sbjct: 228 EDMAERDVVSWNMMIAA-LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 286

Query: 321 YHGIWVHVYIKKNQISIDN------IEL---------AYDLFSEISEKNVYLWTSVIAAY 365
             G  +H  + ++   ID       IEL         A  +F+ + ++N   WT +I   
Sbjct: 287 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 346

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
                  K+++LF +M       DQ     L+S C +   +D     L    +++++  K
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN--RMD-----LCLGRQLHSLCLK 399

Query: 426 MQH------YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
             H         ++ L  + G L ++A F+ S     D+  W+S++ A
Sbjct: 400 SGHNRAIVVSNSLISLYAKCGDL-QNAEFVFSSMSERDIVSWTSMITA 446



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 169/397 (42%), Gaps = 70/397 (17%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++HS  + +   R   +S  +       GDL  A+ +     E +I  W S     +I  
Sbjct: 392 QLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS-----MITA 446

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           Y Q                   G + +  + FD +  R+ I+WN M+  Y   G   +GL
Sbjct: 447 YSQ------------------IGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGL 488

Query: 179 GLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
            + S M   + V+PD VT V+L      +   ++G  +     ++ + ++ S+ N  + M
Sbjct: 489 KMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITM 548

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLI 293
           Y KCG+I EAQKL     ++  DVV W  +++GY +     +A + FD+M+ +    + I
Sbjct: 549 YSKCGRISEAQKLFDL--LNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYI 606

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
           S+  ++SG            C+  G +  G                 +L +D+ + +   
Sbjct: 607 SYVAVLSG------------CSHSGLVQEG-----------------KLYFDMMTRVHGI 637

Query: 354 NVYL--WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-HGGLVDEGY 410
           +  L  ++ ++     AGH  +A DL  +M     KP    + ALLSAC  HG   DE  
Sbjct: 638 SPGLEHFSCMVDLLGRAGHLTEAKDLIDKMP---MKPTAEVWGALLSACKIHGN--DELA 692

Query: 411 DFLSKKSRVYNI-KPKMQHYGCMVDLLGRAGHLEESA 446
           +  +K   V+ +  P    Y  +  +   AG  ++SA
Sbjct: 693 ELAAK--HVFELDSPDSGSYMLLAKIYSDAGKSDDSA 727


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 205/583 (35%), Positives = 320/583 (54%), Gaps = 88/583 (15%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLR 207
           +FD++P+ D   WNTMI  Y +    +E + L  +M  +   P D  ++  +I A  +L+
Sbjct: 60  VFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLK 119

Query: 208 DLEMGKNLH-----------LFLEES---------TMKISGSLL-----------NYLVD 236
           D   G+ LH           LF+E +          ++I+ ++L           N L+ 
Sbjct: 120 DPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLA 179

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
            Y + G+I  A  L  R  + E D+V W T++ G+    +   A++LFD   ER+LISW+
Sbjct: 180 EYVRVGEINLAHDLFDR--MPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWS 237

Query: 297 LMISGML-----NQDAEFKYK------------------SCASIGALYHGIWVHVYIKKN 333
            MI+        N+     ++                  +C  +GAL  G  +H  I++N
Sbjct: 238 SMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERN 297

Query: 334 QISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           +I ID               +I+ +  +F+ ++ ++V+ W+++I   A  G  + A+D F
Sbjct: 298 RIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHF 357

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
            +M     KP+ VTFI +LSACSH GLVDEG+ + +  S+VY++ PK++HYGC+VD+LGR
Sbjct: 358 SKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGR 417

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
           AG L+E+   I SMP  PD  +W +LL ACR ++NV++AE A  +L E +P  DG +VLL
Sbjct: 418 AGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLL 477

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
           +NIY++A   D +  +R  ++++ ++K  G S IE    VH+F +GD  +P S++I  ML
Sbjct: 478 SNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRML 537

Query: 559 NEIEMTLQQQG---LQETSLQ-------------HRERLAVAFGLISTSEKTTIRIVNNL 602
           +EI   L+  G   L  + LQ             H E+LA+AFGL+ST+  +TIRIV NL
Sbjct: 538 SEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNL 597

Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R+C DCH  +K+ S+ Y R I++RD  RFH F  G CSC+DYW
Sbjct: 598 RVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 208/626 (33%), Positives = 328/626 (52%), Gaps = 81/626 (12%)

Query: 49  RSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           +SC+   +  E ++IH H++      D  + T +       G L  AQ++  +    ++ 
Sbjct: 83  KSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVV 142

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
            + +     LI GY                     G ++   ++FD++P +DV+SWN MI
Sbjct: 143 SYTA-----LITGYASR------------------GYIESAQKMFDEIPIKDVVSWNAMI 179

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           S Y   G Y++ L L  +M    V PDE TM +++SA  +   +E+G+ +H ++ +    
Sbjct: 180 SGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFG 239

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  ++N L+D+Y KCG++  A +LL    +   DV+ W TL+ GY   N   EA  LF 
Sbjct: 240 SNLKIVNALIDLYSKCGEVETACELL--EGLSNKDVISWNTLIGGYTHMNLYKEALLLFQ 297

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----------NQI 335
           EM+        + +  +L         +CA +GA+  G W+HVYI K          + +
Sbjct: 298 EMLRSGETPNDVTMLSIL--------PACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSL 349

Query: 336 SIDNIEL-----AYDLFSEISEKNVY-----LWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
               I++       D   ++S+ + +      W ++I  +AM G A  A D+F  M + G
Sbjct: 350 RTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNG 409

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
            +PD +TF+ LLSACSH G++D G +      + YNI PK++HYGCM+DLLG +G  +E+
Sbjct: 410 IEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEA 469

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
              I +MP+ PD  IW SLL+AC+ H N++L E   K L + +P N G++VLL+NIYA A
Sbjct: 470 EEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATA 529

Query: 506 GRLDDMSRIRMKLRDMGLKKQL-GYSLIEQGGFVHKFTSGDIFNPHSEEIY--------- 555
           G+ +++ +IR  L D G+KK++ G S IE    VH+F  GD  +P + EIY         
Sbjct: 530 GKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVL 589

Query: 556 -----------LMLNEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRI 604
                       +L E+E   ++  L+     H E+LA+AFGLIST   T + IV NLR+
Sbjct: 590 LEEAGFVPDTSEVLQEMEEEWKEGALR----HHSEKLAIAFGLISTKPGTKLTIVKNLRV 645

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGR 630
           C +CH   K+ S++Y REI+ RD  R
Sbjct: 646 CRNCHEATKLISKIYKREIIARDRTR 671


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 223/681 (32%), Positives = 336/681 (49%), Gaps = 98/681 (14%)

Query: 47  VERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
           V ++C ++ +  +IH   +    M D  ++  +         +G A+ +  +    ++  
Sbjct: 159 VLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGS 218

Query: 107 WNSIIENQLINGYPQEVFAIYLYL-----VTRTVLLNKC--------------------- 140
           WN++I     +G  +E   +   L     VT   LL+ C                     
Sbjct: 219 WNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 278

Query: 141 -----------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
                            G+L++  ++FD++  RD+ISWN++I  Y         + L  +
Sbjct: 279 ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 338

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH-------LFLEESTMKISGSLLNYLVD 236
           M    + PD +T++SL S  ++L D+   +++         FLE+ T+       N +V 
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIG------NAVVV 392

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY K G +  A+ +     +   DV+ W T++SGY ++    EA  +++ M E   I+  
Sbjct: 393 MYAKLGLVDSARAVFNW--LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA-- 448

Query: 297 LMISGMLNQDAEFKY-KSCASIGALYHGIWVHVYIKKNQISID---------------NI 340
                  NQ        +C+  GAL  G+ +H  + KN + +D                +
Sbjct: 449 ------ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRL 502

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           E A  LF +I   N   W ++IA +   GH +KA+ LF EM + G KPD +TF+ LLSAC
Sbjct: 503 EDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 562

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLVDEG          Y I P ++HYGCMVD+ GRAG LE +  FI SM + PD SI
Sbjct: 563 SHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASI 622

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           W +LL ACR H NV L + A +HL E +P + G HVLL+N+YA AG+ + +  IR     
Sbjct: 623 WGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHG 682

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQE 572
            GL+K  G+S +E    V  F +G+  +P  EE+Y  L  ++  L+  G        LQ+
Sbjct: 683 KGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQD 742

Query: 573 TS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                     + H ERLA+AF LI+T  KTTIRI  NLR+CGDCHS  K  S++  REI+
Sbjct: 743 VEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREII 802

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD+ RFH F+ G CSC DYW
Sbjct: 803 VRDSNRFHHFKNGVCSCGDYW 823



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 174/450 (38%), Gaps = 71/450 (15%)

Query: 105 KIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164
           +I N  I  +L+N        +Y YL          G +      FD + NRDV +WN M
Sbjct: 82  QIQNVCISAKLVN--------LYCYL----------GNVALARHTFDHIQNRDVYAWNLM 123

Query: 165 ISCYTSMGMYREGLGLLSK-MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           IS Y   G   E +   S  M + G++PD  T  S++ A   + D   G  +H    +  
Sbjct: 124 ISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFG 180

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                 +   L+ +Y +   +G A+ L    E+   D+  W  ++SGY +S    EA  L
Sbjct: 181 FMWDVYVAASLIHLYSRYKAVGNARILFD--EMPVRDMGSWNAMISGYCQSGNAKEALTL 238

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DN 339
            + +   + ++   ++S    +  +F         ++ HG+   +++    I +      
Sbjct: 239 SNGLRAMDSVTVVSLLSA-CTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGR 297

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS- 398
           +     +F  +  +++  W S+I AY +     +AI LF EM  +  +PD +T I+L S 
Sbjct: 298 LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASI 357

Query: 399 --------ACS--HGGLVDEGY------------------DFLSKKSRVYNIKPKMQ--H 428
                   AC    G  + +G+                    +     V+N  P      
Sbjct: 358 LSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVIS 417

Query: 429 YGCMVDLLGRAGHLEESANFITSM----PIPPDVSIWSSLLRACR----CHQNVKLAEHA 480
           +  ++    + G   E+      M     I  +   W S+L AC       Q +KL    
Sbjct: 418 WNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRL 477

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            K+    D         LA++Y K GRL+D
Sbjct: 478 LKNGLYLDVF---VVTSLADMYGKCGRLED 504


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 226/705 (32%), Positives = 353/705 (50%), Gaps = 96/705 (13%)

Query: 24  LVPKMRISRKFANV-CPVSLDVIMVERSCSSIDEFERIHSHLITT-NLMRDPQISTQVFE 81
           L+PK   +  F ++ C   L  +   +S   + +  ++H+H+ T   L R+  ++T++  
Sbjct: 10  LIPKPSSTSTFDSLQCGTLLQSLTNSKS---LTQALQLHAHVTTGGTLRRNTYLATKLAA 66

Query: 82  FLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV---------T 132
                G + YAQ I  Q       +WNS+I     N  P     +YL ++         T
Sbjct: 67  CYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFT 126

Query: 133 RTVLLNKCGKL--KEVCQ------------------------------------LFDKLP 154
              +L  CG L  +E+ +                                    +FD++ 
Sbjct: 127 YPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRML 186

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
            RD+ SWNTM+S +   G  R    +   M  +G   D  T+++L+SA   + DL++GK 
Sbjct: 187 VRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKE 246

Query: 215 LHLFL---EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           +H ++    ES    +G L+N ++DMY  C  +  A+KL     +   DVV W +L+SGY
Sbjct: 247 IHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVK--DVVSWNSLISGY 304

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
            K  +  +A  LF  MV    +   + +  +L         +C  I AL  G  V  Y+ 
Sbjct: 305 EKCGDAFQALELFGRMVVVGAVPDEVTVISVL--------AACNQISALRLGATVQSYVV 356

Query: 332 KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           K    ++               ++  A  +F E+ EKN+   T ++  + + G  ++AI 
Sbjct: 357 KRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAIS 416

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           +F EM   G  PD+  F A+LSACSH GLVDEG +   K +R Y+++P+  HY C+VDLL
Sbjct: 417 IFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLL 476

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG+L+E+   I +M + P+  +W++LL ACR H+NVKLA  + + L E +P     +V
Sbjct: 477 GRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYV 536

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
            L+NIYA   R +D+  +R  +    L+K   YS +E    VH+F  GD  +  S++IY 
Sbjct: 537 CLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYA 596

Query: 557 MLNEIEMTLQQQGLQ-ETSL---------------QHRERLAVAFGLISTSEKTTIRIVN 600
            L ++   L++ G + +TSL                H ERLA+AF LI+T   TTIRI  
Sbjct: 597 KLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITK 656

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+CGDCH+ +K+ S++ NREI++RD  RFH F+ G CSC  YW
Sbjct: 657 NLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 201/525 (38%), Positives = 298/525 (56%), Gaps = 55/525 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKL 206
           Q+FD++P+ ++ +WNT+I  Y S     + L +  +M  +    PD+ T   LI A ++L
Sbjct: 90  QVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASEL 149

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            +L  GK  H  + +  +     +LN L+  Y KCG++G   ++         DVV W +
Sbjct: 150 EELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVF--VNXPRRDVVSWNS 207

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           +++ +V+    +EA  LF EM  +N+    + + G+L+        +CA       G WV
Sbjct: 208 MITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLS--------ACAKKSDFEFGRWV 259

Query: 327 HVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYA----- 366
           H YI++N+I                  ++E A  LF ++ EK++  WT+++  YA     
Sbjct: 260 HSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEY 319

Query: 367 -------MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
                  M GH + AI LF +M+E   KP+ VTF  +L ACSH GLV+EG  F ++   V
Sbjct: 320 DAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELV 379

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           Y + P ++HY CMVD+LGRAG LEE+   I  MP+ P  S+W +LL AC  H+NV LAE 
Sbjct: 380 YGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQ 439

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A   L E +P N GA+VLL+NIYAKAG+ D +S +R  +RD+GLKK+ G S IE  G VH
Sbjct: 440 ACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVH 499

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQETSL-QHRERLA 582
           +F  GD  +P +++IY  L+EI   L+  G                ++E +L  H E+LA
Sbjct: 500 EFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLA 559

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
           +AFGLIST +   IRIV NLR+CGDCHS  K+ S++Y+REI++RD
Sbjct: 560 IAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRD 604



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 66/286 (23%)

Query: 49  RSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           ++ S ++E    +  H  +I   L  D  I   +  F    G+LG   ++       ++ 
Sbjct: 144 KAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVV 203

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN--------------------------- 138
            WNS+I   +  G P+E   ++  + T+ V  N                           
Sbjct: 204 SWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI 263

Query: 139 --------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY---- 174
                               KCG +++  +LFDK+P +D++SW TM+  Y  +G Y    
Sbjct: 264 ERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQ 323

Query: 175 --------REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
                   ++ + L SKM  + V P+ VT  +++ A + +  +E G+     +E     +
Sbjct: 324 GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVL 383

Query: 227 SGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
            G + +Y  +VD+  + G + EA +L+ +  +     V W  L+  
Sbjct: 384 PG-VKHYACMVDILGRAGLLEEAVELIEKMPMAPAASV-WGALLGA 427



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALL 397
           +++ A  +F +I   N+Y W ++I AYA + +  +++ +FL M  ++   PD+ TF  L+
Sbjct: 84  SLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLI 143

Query: 398 SACS 401
            A S
Sbjct: 144 KAAS 147


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 318/588 (54%), Gaps = 64/588 (10%)

Query: 37  VCPVSLDVIMVERSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P S     + +SC+ +    E ++IH H++   L  DP + T +       G+LGYA+
Sbjct: 128 VEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAE 187

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
            +  +       + +++    LI GY                 L  C  L +  +LF+++
Sbjct: 188 LVFSKS-----SLRDAVSFTALITGY----------------TLRGC--LDDARRLFEEI 224

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P RD +SWN MI+ Y   G + E L    +M    V+P+E TMV+++SA  +   LE+G 
Sbjct: 225 PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN 284

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +  ++E+  +  +  L+N L+DMY KCG + +A+ L     I E D++ W  ++ GY  
Sbjct: 285 WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLF--EGICEKDIISWNVMIGGYSH 342

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
            N   EA  LF +M + N+    +    +L         +CA +GAL  G W+H YI K 
Sbjct: 343 MNSYKEALALFRKMQQSNVEPNDVTFVSIL--------PACAYLGALDLGKWIHAYIDKK 394

Query: 334 QISI----------------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
            + +                 NIE A  +F+ +  K++  W ++I+  AM GHA  A++L
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALEL 454

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M + G +PD +TF+ +LSACSH GLV+ G    S     Y+I PK+QHYGCM+DLLG
Sbjct: 455 FRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLG 514

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAG  +E+   + +M + PD +IW SLL ACR H NV+L E A KHL E +P N GA+VL
Sbjct: 515 RAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL 574

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKK-QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           L+NIYA AGR DD++RIR KL D G+KK Q  Y ++++      F       P + E+  
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKKXQDIYKMLDE--IDQSFGERPGXVPDTSEVLY 632

Query: 557 MLNEIEMTLQQQGLQETSL-QHRERLAVAFGLISTSEKTTIRIVNNLR 603
            ++E          +E SL  H E+LA+AFGLIST  +TTIRIV NLR
Sbjct: 633 DMDE--------EWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLR 672



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           N+  A  LF  I + N ++W ++I   +++     AID ++ M   G +P+  TF  LL 
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLK 140

Query: 399 ACSHGGLVDEG 409
           +C+  G   EG
Sbjct: 141 SCAKVGATQEG 151


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/565 (35%), Positives = 307/565 (54%), Gaps = 73/565 (12%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD++  R +I WNT+I CY       +G+ L  ++  E + PD  T+  +I    +L  
Sbjct: 72  IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGV 130

Query: 209 LEMGKNLH-LFLE---ESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-GRYEIDEV---- 259
           ++ GK +H L L+    S + + GSL+N    MY KCG+I  A+K+  G  + D V    
Sbjct: 131 VQEGKQIHGLALKIGFGSDVFVQGSLVN----MYSKCGEIDCARKVFDGMIDKDVVLWNS 186

Query: 260 ----DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-------------- 301
               ++V W  +++GY+KS + D A  LF +M   +L++W LMI+G              
Sbjct: 187 LIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMF 246

Query: 302 --MLNQDAEFKYKSCASI-------GALYHGIWVHVYIKKNQISIDNI------------ 340
             ML   +   + +  S+         L  G W+H Y++KN   +D I            
Sbjct: 247 FMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKC 306

Query: 341 ---ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
              E A  +F  I +K V  WT++I    + G A  A+ LFLEM +TG KP+ + FI +L
Sbjct: 307 GCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVL 366

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           +AC+H GLVD+G  +       Y I+P ++HYGC+VD+L RAGHLEE+ N I +MPI P+
Sbjct: 367 NACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPN 426

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             IW SLL   R H  + + E+A + + E  P   G ++LL+N+YA +G  + +S +R  
Sbjct: 427 KVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREM 486

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ- 576
           +   G +K  G S +E  G +H+F  GDI +P ++EIY  ++E++  L+  G    + Q 
Sbjct: 487 MYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQV 546

Query: 577 ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                           H ERLA+AFGLI+      IRI+ NLR+C DCHS  K+ S++Y+
Sbjct: 547 LLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYS 606

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           REI++RDN RFH F+ G CSC DYW
Sbjct: 607 REIIVRDNCRFHHFKNGSCSCMDYW 631



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++    +F  +  + V  W  +I      GM    L L  +M   G+ P+ +  + 
Sbjct: 305 KCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIG 364

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           +++A      ++ G+  +  +  +  KI  +L +Y  LVD+  + G + EA+  +    I
Sbjct: 365 VLNACNHAGLVDDGRQ-YFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPI 423

Query: 257 DEVDVVLWTTLVSG 270
              + V+W +L+ G
Sbjct: 424 SP-NKVIWMSLLGG 436


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 202/578 (34%), Positives = 301/578 (52%), Gaps = 71/578 (12%)

Query: 136 LLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMY-REGLGLLSKMGAEGVSPD 192
           L   CG       LF ++P  ++DV  W T+++     G    EG     +M  EGV  D
Sbjct: 62  LYASCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLD 121

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           +V M+S+    T++ DL MG+     L +  + +   + N +++MY KCG + E +++  
Sbjct: 122 DVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVF- 180

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------- 301
             E++E +VV W+TL+ G VK    +  R +FDEM ERN + WT+MI+G           
Sbjct: 181 -CEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGF 239

Query: 302 MLNQDAEFKYK-------------SCASIGALYHGIWVHVYIKKNQ-------------- 334
           +L  +   +++             +CA  G +  G WVHVY  K                
Sbjct: 240 LLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVD 299

Query: 335 --ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  I++A+ +F  + ++NV  W +++   AM G  +  +D+F +M E   KPD +T
Sbjct: 300 MYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEE-AKPDDLT 358

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           F+A+LSACSH GLVD+GY +       Y   PK++HY CMVD+LGRAGHLEE+   I  M
Sbjct: 359 FMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKM 418

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P+ P+  +  SLL +C  H  ++L E   + L + D  N   HVLL+N+Y   G+ D  +
Sbjct: 419 PMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKAN 478

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-- 570
            +R  L+  G++K  G S I  GG +H+F++GD  +P ++EIY  LN +   L+  G   
Sbjct: 479 SLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVP 538

Query: 571 -----------------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
                                  ++    H E+LAV FG IST     + I  NLRIC D
Sbjct: 539 NTTNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQD 598

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CHS +K+ S++YNREIVIRD  RFH F+ G CSC DYW
Sbjct: 599 CHSAIKIVSKIYNREIVIRDRNRFHCFKHGSCSCSDYW 636



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 138/360 (38%), Gaps = 54/360 (15%)

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGS---LLNYLVDMYFKCGKIGEAQKLLGRY 254
           SL+ +  +   L  GK LH  +  S +  S     LLN L  +Y  CG    A+ L  + 
Sbjct: 20  SLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFYQI 79

Query: 255 EIDEVDVVLWTTLVSGYVKSNER-DEARRLFDEMVERNLI-SWTLMIS-----------G 301
                DV  WTTL++  V+   +  E    F EM +  ++     MIS           G
Sbjct: 80  PRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLG 139

Query: 302 MLNQDAEFKYKSCASIGALYHGIWVHVYIK----------------KNQIS--------- 336
           M  Q      K    +G       +++Y+K                +N +S         
Sbjct: 140 MGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVV 199

Query: 337 -IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFI 394
             + +E    +F E+ E+N   WT +IA Y   G +++   L  EM        + VT  
Sbjct: 200 KWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLS 259

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM-----VDLLGRAGHLEESANFI 449
           ++LSAC+  G V      + +   VY +K   +    M     VD+  + G ++ +    
Sbjct: 260 SILSACAQSGDV-----LMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVF 314

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             +P   +V  W+++L     H   K     F  + E    +D   + + +  + +G +D
Sbjct: 315 KYLP-KRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEAKPDDLTFMAVLSACSHSGLVD 373


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 209/676 (30%), Positives = 346/676 (51%), Gaps = 94/676 (13%)

Query: 35  ANVCPVSLDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
           + + P       V  SC++   +D  +++HS ++         ++  +       GD   
Sbjct: 139 SGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVM 198

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQ--- 148
           A+ +  +    +   WN++I   +                             + CQ   
Sbjct: 199 AKVVFDRMRLKDTSTWNTMISMHM-----------------------------QFCQFDL 229

Query: 149 ---LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISART 204
              LFD++ + D++SWN++I+ Y   G     L   S M  +  + PD+ T+ S++SA  
Sbjct: 230 ALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACA 289

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
               L++GK +H  +  + + I+G++ N L+ MY K G +  A +++       ++V+ +
Sbjct: 290 NRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAF 349

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDAEFKYK-------- 312
           T+L+ GY K  + D AR +FD +  R++++WT MI G     L  DA   ++        
Sbjct: 350 TSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPK 409

Query: 313 -----------SCASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDL 346
                        +S+ +L HG  +H    +    + +S+ N           I+ A  +
Sbjct: 410 PNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKI 469

Query: 347 FSEI-SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           F+ I S ++   WTS+I + A  G   +AI+LF +M     KPD +T++ +LSAC+H GL
Sbjct: 470 FNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGL 529

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           V++G  + +    V+NI+P   HY CM+DLLGRAG LEE+ NFI +MPI PDV  W SLL
Sbjct: 530 VEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLL 589

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            +CR H+ V LA+ A + L   DP N GA++ LAN  +  G+ +D +++R  ++D  +KK
Sbjct: 590 SSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKK 649

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------QET 573
           + G+S ++    VH F   D  +P  + IY M+++I   +++ G             QE 
Sbjct: 650 EQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEV 709

Query: 574 SLQ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
             Q    H E+LA+AF LI+T + TT+RI+ NLR+C DCHS ++  S +  REI++RD  
Sbjct: 710 KEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDAT 769

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSC+DYW
Sbjct: 770 RFHHFKDGSCSCQDYW 785



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 170/405 (41%), Gaps = 75/405 (18%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G L    ++FD++P  D +SW TMI  Y  +G+++  +    +M + G+SP + T  +
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++++    + L++GK +H F+ +        + N L++MY KCG    A+ +  R  +  
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLK- 209

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-------- 310
            D   W T++S +++  + D A  LFD+M + +++SW  +I+G  +Q  + +        
Sbjct: 210 -DTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFM 268

Query: 311 ----------------YKSCASIGALYHGIWVHVYIKKNQISIDN--------------- 339
                             +CA+  +L  G  +H +I +  + I                 
Sbjct: 269 LKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGA 328

Query: 340 IELAY---------------------------------DLFSEISEKNVYLWTSVIAAYA 366
           +E+A+                                  +F  +  ++V  WT++I  YA
Sbjct: 329 VEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYA 388

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G    A+ LF  M   G KP+  T  A+LS  S    +D G    +   R+  +   +
Sbjct: 389 QNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVS-SV 447

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
                ++ +  R+G ++++      +    D   W+S++ +   H
Sbjct: 448 SVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQH 492



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 148/359 (41%), Gaps = 80/359 (22%)

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYE 255
           V L+ +  K RD  +G+ +H  + +  ++  G  L N L+++Y K G   +A +L    E
Sbjct: 16  VHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFD--E 73

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK----- 310
           +       W T++S + K+   D ARR+FDE+ + + +SWT MI G  N    FK     
Sbjct: 74  MPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVG-YNHLGLFKSAVHA 132

Query: 311 -------------------YKSCASIGALYHGIWVHVYIKK----NQISIDNIEL----- 342
                                SCA+  AL  G  VH ++ K      + + N  L     
Sbjct: 133 FLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAK 192

Query: 343 ------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
                 A  +F  +  K+   W ++I+ +        A+ LF +M    T PD V++ ++
Sbjct: 193 CGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQM----TDPDIVSWNSI 248

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           ++   H     +GYD                          RA  LE  +  + S  + P
Sbjct: 249 ITGYCH-----QGYDI-------------------------RA--LETFSFMLKSSSLKP 276

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA-HVLLANIYAKAGRLDDMSRI 514
           D     S+L AC   +++KL +    H+   D    GA    L ++YAK+G ++   RI
Sbjct: 277 DKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRI 335


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/511 (37%), Positives = 295/511 (57%), Gaps = 56/511 (10%)

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           V PD  T   ++ A  KL D+  GK +H   ++     +  L N ++++Y  CG++G+A 
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML----- 303
            L  +  + + D V W  +++   K  + D A   F  M  +N+ SWT MISG +     
Sbjct: 66  LLFEK--MPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKP 123

Query: 304 NQDAEFKYK------------------SCASIGALYHGIWVHVYIKKNQ----------- 334
           N+  +   K                  +CA +G L  G  VH Y  K+            
Sbjct: 124 NEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTL 183

Query: 335 ----ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
               +    +E A  +F E+ E+ V  W+++IA  AM G A++A+ LF EM + G KP+ 
Sbjct: 184 IDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNG 243

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           VTFI LL ACSH GL+DEG  F +  +  Y + P+++HYGC+VDL  RAG LEE+  FI 
Sbjct: 244 VTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFIL 303

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
           SMPI P+  +W +LL  C+ H+N+ LAE A KHL+E DPLNDG +V+++NIYA+A R +D
Sbjct: 304 SMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWED 363

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL 570
            +R+R  ++D G+KK  G+S I   G VH+F +GD  +P +E+I  + +++ + ++++G 
Sbjct: 364 AARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGY 423

Query: 571 Q-ETSL---------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
             +TS+               +H E+LAV FGL++T E T IRI+ NLR+C DCH+ +K+
Sbjct: 424 APKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKI 483

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S + +REI++RD  RFH F+ GQCSCRD+W
Sbjct: 484 ISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 225/670 (33%), Positives = 343/670 (51%), Gaps = 85/670 (12%)

Query: 39  PVSLDVIMVE--RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF---LVFTGDLGYAQ 93
           P++ D  + E  R C ++++ +++H  +    L + P   T++      +     L YA+
Sbjct: 21  PMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYAR 80

Query: 94  QI-------IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV---------TRTVLL 137
           +        +R  D   + + NS+I      G  +E   +Y+ ++         T   +L
Sbjct: 81  KAFELFKEDVRSDDA--LFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVL 138

Query: 138 NKCGKLKEVCQ-------LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
           + C K+   C+       +       DV   N +I  Y   G    G  +   M    V 
Sbjct: 139 SGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNV- 197

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
              V+  SLI      R     + + LF E     ++  ++N LVDMY KCG I  A++L
Sbjct: 198 ---VSWTSLICGYA--RGDRPKEAVSLFFE----MLNKVMVNALVDMYMKCGAIDAAKRL 248

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE-- 308
               E  + ++VL+ T++S Y +     EA  + DEM+++      + +   ++  A+  
Sbjct: 249 FD--ECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLV 306

Query: 309 --FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
             F  K C       HG WVH YI+KN I  D               + + A  +F++++
Sbjct: 307 DLFYGKVC-------HGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT 359

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           E++V  WT+ I   AM G+ + A  LF +M   G KPD V F+ +L+ACSHGG V++G  
Sbjct: 360 ERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLH 419

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
             S     + I P+++HYGCMVDLLGRAG L E+ + I SMP+ P+  +W SLL ACR H
Sbjct: 420 IFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVH 478

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           +NV++A +A + + E  P   G HVLL+NIYA AG+  D++R+R+ LR+ G++K  G S 
Sbjct: 479 KNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSS 538

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------QETSL--- 575
           ++  G +H+FTSGD  +P    I LML E+       G              QE      
Sbjct: 539 VQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLS 598

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
           +H E+LA+AFGLI+T     IR+V NLR+C DCHSF K+ S +YNREI++RDN RFH F+
Sbjct: 599 RHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFR 658

Query: 636 GGQCSCRDYW 645
            G CSC DYW
Sbjct: 659 QGLCSCCDYW 668


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/511 (37%), Positives = 286/511 (55%), Gaps = 39/511 (7%)

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           S Y    + R  + + S+M  + VSP++ T   LI A      +E GK +H  + +    
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
             G  LN L+ MY     + +A+++       + + V W  +++ YV+SN   EA  LFD
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN------ 339
            M   N++    + + ML+        +C  +GAL  G W+H YI+K+ I +D+      
Sbjct: 187 RMRLENVVLDKFVAASMLS--------ACTGLGALEQGKWIHGYIEKSGIELDSKLATTV 238

Query: 340 ---------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                    +E A ++F+E+ +K +  W  +I   AM G  + AI+LF EME     PD 
Sbjct: 239 IDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 298

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           +TF+ +LSAC+H GLV+EG  +    + V  +KP M+H+GCMVDLLGRAG LEE+   I 
Sbjct: 299 ITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLIN 358

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            MP+ PD  +  +L+ ACR H N +L E   K + E +P N G +VLLAN+YA AGR +D
Sbjct: 359 EMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWED 418

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL 570
           ++++R  + D G+KK  G+S+IE    V +F +G   +P ++EIY  L+EI  T++  G 
Sbjct: 419 VAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGY 478

Query: 571 ---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                          +E  L  H E+LA+AFGL+ T    T+RI  NLRIC DCH   K+
Sbjct: 479 VPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKL 538

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S+VY+REI+IRD  RFH F+ G CSC+DYW
Sbjct: 539 ISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 1/138 (0%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L++  ++F++LP + + SWN MI      G     + L  +M  E V+PD +T V+
Sbjct: 244 KCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVN 303

Query: 199 LISARTKLRDLEMGKNLHLFLEES-TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++SA      +E GK+   ++ E   +K        +VD+  + G + EA+KL+    ++
Sbjct: 304 VLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVN 363

Query: 258 EVDVVLWTTLVSGYVKSN 275
               VL   + +  +  N
Sbjct: 364 PDAGVLGALVGACRIHGN 381


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 302/559 (54%), Gaps = 68/559 (12%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F ++   +   W  +I  Y   G + E + L + M  +G+ P   T  +L+ A +   D
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 209 LEMGKNLHLFLEESTMKISG-----SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
           + +G+ +H      T+ I G      + N L+DMY KCG +G   ++    E+ + DV+ 
Sbjct: 155 VNLGRQVH----TQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFD--EMLDRDVIS 208

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--------------QDAEF 309
           WT+L+  Y K    + A  LFD +  +++++WT M++G                 Q A  
Sbjct: 209 WTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGV 268

Query: 310 K---------YKSCASIGALYHGIWVHVYIKKNQIS-----------ID------NIELA 343
           K           +CA +GA  +  WV    +++              ID      ++E A
Sbjct: 269 KTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDA 328

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
           Y +F  + E+NVY ++S+I  +AM G A  A++LF EM +T  KP++VTFI +L+ACSH 
Sbjct: 329 YKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHA 388

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           G+V++G    +     + + P   HY CMVDLLGRAG LEE+ N +  MP+ P   +W +
Sbjct: 389 GMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGA 448

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL ACR H N  +A+ A  HL E +P   G ++LL+NIYA AGR DD+S++R  +R  GL
Sbjct: 449 LLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGL 508

Query: 524 KKQLGYSLIE-QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQET--------- 573
           KK  G S +E + G +H+F +GD+ +P S EI   L ++   L+  G Q           
Sbjct: 509 KKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDIS 568

Query: 574 -------SLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                   + H E+LA+AFGL++T+   TIRIV NLRIC DCHS M   SQ+  REIV+R
Sbjct: 569 DEEKKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVR 628

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           DN RFH F+ G+CSC ++W
Sbjct: 629 DNMRFHHFRDGRCSCGNFW 647



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 64/115 (55%), Gaps = 3/115 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +++  ++F+++  R+V S+++MI  +   G+    + L  +M    + P+ VT + 
Sbjct: 321 KCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIG 380

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLL 251
           +++A +    +E G+ L   +EE    ++ S  +Y  +VD+  + G++ EA  L+
Sbjct: 381 VLTACSHAGMVEQGQQLFAMMEECH-GVAPSEDHYACMVDLLGRAGRLEEALNLV 434


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 211/601 (35%), Positives = 324/601 (53%), Gaps = 60/601 (9%)

Query: 91  YAQQIIRQGD-EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----VLLN------ 138
           Y   +I  G  EPE  +++ ++         ++  AI+ ++ + T     VLLN      
Sbjct: 91  YVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMY 150

Query: 139 -KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            KCG L+E   LFDK+P +D++SW  +IS Y+  G   E L L  KM   G  P+E T+ 
Sbjct: 151 AKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLS 210

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           SL+ A         G+ LH F  +    ++  + + L+DMY +   + EA+ +     + 
Sbjct: 211 SLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFN--SLA 268

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
             +VV W  L++G+ +  E +   RLF +M+ +         S +L         +CAS 
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL---------ACASS 319

Query: 318 GALYHGIWVHVYIKKN---------QISID------NIELAYDLFSEISEKNVYLWTSVI 362
           G+L  G WVH ++ K+            ID      +I+ A  +F  + ++++  W S+I
Sbjct: 320 GSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSII 379

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--YDFLSKKSRVY 420
           + YA  G   +A+ LF +M +   +P+++TF+++L+ACSH GL+DEG  Y  L KK   +
Sbjct: 380 SGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK---H 436

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I+ ++ H+  +VDLLGRAG L E+  FI  MPI P  ++W +LL ACR H+N+ L  +A
Sbjct: 437 KIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYA 496

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + + E DP + G HVLL+NIYA AGRL D +++R  +++ G+KK+   S +E    VH 
Sbjct: 497 AEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHV 556

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVA 584
           F + D  +P  EEI  M  +I   +++ G                +E  LQ H E+LA+A
Sbjct: 557 FVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALA 616

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F ++ T    TIRI  N+RICGDCHS  K  S+V  REI++RD  RFH F  G CSCRDY
Sbjct: 617 FAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDY 676

Query: 645 W 645
           W
Sbjct: 677 W 677


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 307/567 (54%), Gaps = 69/567 (12%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGL---LSKMGAEGVSPDEVTMVSLISART 204
           ++F+++P R+  SWNT+I  ++     +  + +      M  E V P+  T  S++ A  
Sbjct: 80  KIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACA 139

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID------- 257
           K   ++ GK +H    +        +++ LV MY  CG + +A+ L  +  I+       
Sbjct: 140 KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMT 199

Query: 258 -----EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------- 301
                + ++VLW  ++ GY++  +   AR LFD+M +R+++SW  MISG           
Sbjct: 200 DRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAV 259

Query: 302 -----MLNQDAEFKYKSCASI-------GALYHGIWVHVYIKKNQISIDN---------- 339
                M   D    Y +  S+       G+L  G W+H+Y + + I ID+          
Sbjct: 260 EVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMY 319

Query: 340 -----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                IE A  +F  +  +NV  W+++I  +A+ G A  AID F +M + G +P  V +I
Sbjct: 320 SKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYI 379

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            LL+ACSHGGLV+EG  + S+   V  ++P+++HYGCMVDLLGR+G L+E+  FI +MPI
Sbjct: 380 NLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPI 439

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            PD  IW +LL ACR   NV++ +     L +  P + GA+V L+N+YA  G   ++S +
Sbjct: 440 KPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEM 499

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS 574
           R+++++  ++K  G SLI+  G +H+F   D  +P ++EI  ML EI   L+  G +  +
Sbjct: 500 RLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPIT 559

Query: 575 LQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
            Q                H E++A AFGLISTS    IRIV NLRIC DCHS +K+ S+V
Sbjct: 560 TQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKV 619

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
           Y R+I +RD  RFH FQ G CSC DYW
Sbjct: 620 YKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG +++   +F++LP  +VI+W+ MI+ +   G   + +    KM   GV P +V 
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            ++L++A +    +E G+  +     S   +   + +Y  +VD+  + G + EA++ +  
Sbjct: 378 YINLLTACSHGGLVEEGRR-YFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILN 436

Query: 254 YEIDEVDVVLWTTLVSG 270
             I   DV+ W  L+  
Sbjct: 437 MPIKPDDVI-WKALLGA 452


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 295/552 (53%), Gaps = 57/552 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F  L N     +N++I   +S     E L L   M   G+ PD +T   +I A  +   
Sbjct: 122 IFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSV 181

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
              G  +H  + +S  +    +++ L+ +Y     +G A++L         DVV W  ++
Sbjct: 182 TWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNL--CSARDVVSWNAMI 239

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISG------------MLNQDAEFKYK---- 312
            GYVK  E   AR +FD MV R++ISW  MI+G            + +Q      K    
Sbjct: 240 DGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEA 299

Query: 313 -------SCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEI 350
                  +CA +GAL  G+ +H YI  N+I +++I                LA  +F+ +
Sbjct: 300 TVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM 359

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
             K+V  W ++IA  A+ G+ ++A  LF EM+E G +P+ +TF+A+LSACSH G+VDEG 
Sbjct: 360 ESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQ 419

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
             L   S  Y I+PK++HYGC++DLL RAG LEE+   I +MP+ P+ S   +LL  CR 
Sbjct: 420 KLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRI 479

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           H N +L E   K L    P + G ++LL+NIYA A + DD  ++R  ++  G+ K  G S
Sbjct: 480 HGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVS 539

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE-----------------MTLQQQGLQET 573
           +IE  G VH+F +GD  +P S +IY  LNEI                  + ++++  +  
Sbjct: 540 VIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHA 599

Query: 574 SLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
              H E+LA+A+GL+    K  IRIV NLR+C DCH  +K+ S+VY REI++RD  RFH 
Sbjct: 600 LAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHH 659

Query: 634 FQGGQCSCRDYW 645
           F+ G+CSC D+W
Sbjct: 660 FEDGECSCLDFW 671


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 209/664 (31%), Positives = 325/664 (48%), Gaps = 88/664 (13%)

Query: 60   IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
            +HSH++      D  + T + +     G     +Q+  +    ++  WN++I      G 
Sbjct: 367  VHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGN 426

Query: 120  PQEVFAIYLYL---------VTRTVLLN-------------------------------- 138
             +E   IY  +         +T  +LLN                                
Sbjct: 427  WEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNA 486

Query: 139  ------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
                  +CG +K+   LF+K+  +D+ISW  MI      G+  E L +   M   G+ P+
Sbjct: 487  LISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPN 546

Query: 193  EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
             VT  S+++A +    L+ G+ +H  + E+ +     + N LV+MY  CG + +A+++  
Sbjct: 547  RVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFD 606

Query: 253  RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
            R  + + D+V +  ++ GY   N   EA +LFD + E  L    +    MLN        
Sbjct: 607  R--MTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN-------- 656

Query: 313  SCASIGALYHGIWVHVYIKKN----QISIDNIEL-----------AYDLFSEISEKNVYL 357
            +CA+ G+L     +H  + K+      S+ N  +           A  +F ++ ++NV  
Sbjct: 657  ACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVIS 716

Query: 358  WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
            W ++I   A  G  Q  + LF  M+  G KPD VTF++LLSACSH GL++EG  +    S
Sbjct: 717  WNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMS 776

Query: 418  RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
            R + I P ++HYGCMVDLLGRAG L+E    I +MP   +  IW +LL ACR H NV +A
Sbjct: 777  RDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVA 836

Query: 478  EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
            E A +   + DP N   +V L+++YA AG  D  +++R  +   G+ K+ G S IE G  
Sbjct: 837  ERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDK 896

Query: 538  VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERL 581
            +H F + D  +P SE+IY  L+++   ++ +G                 +     H ERL
Sbjct: 897  LHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERL 956

Query: 582  AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
            A+A+GLIST   T IRI  NLR+C DCH+  K  +++ +REIV RD  RFH F+ G CSC
Sbjct: 957  AIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSC 1016

Query: 642  RDYW 645
             DYW
Sbjct: 1017 GDYW 1020



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 159/318 (50%), Gaps = 28/318 (8%)

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISW 161
           P    W   + + ++N   +   A+   LV    +  KCG  K+  Q+F+KL NRD+I+W
Sbjct: 358 PAALKWGKTVHSHILNAGHESDLAVGTALVK---MYAKCGSYKDCRQVFEKLVNRDLIAW 414

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           NTMI      G + E   +  +M  EG+ P+++T V L++A      L  G+ +H  + +
Sbjct: 415 NTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK 474

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
                  S+ N L+ MY +CG I +A+ L  +  +   D++ WT ++ G  KS    EA 
Sbjct: 475 DGFMFDISVQNALISMYARCGSIKDARLLFNK--MVRKDIISWTAMIGGLAKSGLGAEAL 532

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--- 338
            +F +M +  L    +  + +LN        +C+S  AL  G  +H  + +  ++ D   
Sbjct: 533 AVFQDMQQAGLKPNRVTYTSILN--------ACSSPAALDWGRRIHQQVIEAGLATDAHV 584

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                       +++ A  +F  ++++++  + ++I  YA     ++A+ LF  ++E G 
Sbjct: 585 ANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL 644

Query: 387 KPDQVTFIALLSACSHGG 404
           KPD+VT+I +L+AC++ G
Sbjct: 645 KPDKVTYINMLNACANSG 662



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 196/439 (44%), Gaps = 52/439 (11%)

Query: 132 TRTVLLN---KCGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           T   L+N   +CG ++E  Q+++KL +  R V SWN M+  Y   G   E L LL +M  
Sbjct: 178 TVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G++    T + L+S+      LE G+ +H+   ++ +    ++ N +++MY KCG I E
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHE 297

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ- 305
           A+++  + E     VV WT ++ GY      + A  +F +M +  ++   +    +LN  
Sbjct: 298 AREVFDKMETKS--VVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAF 355

Query: 306 --DAEFKYKSCASIGALYHG----IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359
              A  K+        L  G    + V   + K      + +    +F ++  +++  W 
Sbjct: 356 SGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWN 415

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDE 408
           ++I   A  G+ ++A +++ +M+  G  P+++T++ LL+AC            H  +V +
Sbjct: 416 TMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKD 475

Query: 409 GYDF--------LSKKSRVYNIK-----------PKMQHYGCMVDLLGRAGHLEESANFI 449
           G+ F        +S  +R  +IK             +  +  M+  L ++G   E+    
Sbjct: 476 GFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVF 535

Query: 450 TSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL--LANIYAK 504
             M    + P+   ++S+L AC     +       + + E     D AHV   L N+Y+ 
Sbjct: 536 QDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATD-AHVANTLVNMYSM 594

Query: 505 AGRLDDMSRI--RMKLRDM 521
            G + D  ++  RM  RD+
Sbjct: 595 CGSVKDARQVFDRMTQRDI 613



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 26/236 (11%)

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           L + GA   S D + M+       +++DL  G+ +H  + +    +    +N L++MY +
Sbjct: 132 LQQQGARVNSCDYMKMLKRC---IEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQ 188

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG I EA+++  +    E  V  W  +V GYV+    +EA +L  EM +  L        
Sbjct: 189 CGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTM 248

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYD 345
            +L+        SC S  AL  G  +HV   K ++  D               +I  A +
Sbjct: 249 RLLS--------SCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEARE 300

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           +F ++  K+V  WT +I  YA  GH++ A ++F +M++ G  P+++T+I +L+A S
Sbjct: 301 VFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFS 356


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 211/664 (31%), Positives = 327/664 (49%), Gaps = 110/664 (16%)

Query: 38  CPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97
           C V    I +   C+++ E ++IH+ L+   L+ DPQ+   V +F+              
Sbjct: 6   CIVKHPTISMVEPCTTLRELKQIHTQLLINGLLNDPQL---VGQFVA------------- 49

Query: 98  QGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRD 157
                                               ++ LN    L    Q+ D   N  
Sbjct: 50  ------------------------------------SIALNNPNNLHYSNQVLDNSQNPT 73

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           + ++N+MI  ++            S++   A  ++PD  T   L+    +L     G ++
Sbjct: 74  LFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSV 133

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           H    +   +    + + L+ MY + G +    ++     I E D+V  T +VS   K  
Sbjct: 134 HGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFS--SICEPDLVCQTAMVSACAKMG 191

Query: 276 ERDEARRLFDEMVERNLISWTLMISGM--------------LNQDAEFKYK--------- 312
           +   AR+LFD+M  ++ I+W  MISG               L Q    K           
Sbjct: 192 DVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLS 251

Query: 313 SCASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLFSEISEKNVYL 357
           +C+ +GAL  G W H YI++N++ +                N+  A ++F  + EKNVY 
Sbjct: 252 ACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYT 311

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           W+S I   AM G  +K ++LF  M++   +P+++TF+++L  CS  GLV+EG       S
Sbjct: 312 WSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMS 371

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
           +VY I+P+++HYGCMVDL GRAGHL+E+ NFI SMP+ P V  W +LL AC+ ++N+++ 
Sbjct: 372 KVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMG 431

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E A + + E +  N GA+VLL+NIYA +   D +S +R  +   G++KQ G S+IE GG 
Sbjct: 432 ELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGE 491

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERL 581
           VH+F  GD  +P   EI +ML EI   L+  G                 ++    H E++
Sbjct: 492 VHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKI 551

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AFGLIS S    IRIV NLR+C DCH   K+ S+ +NREIV+RD  RFH F+ G+CSC
Sbjct: 552 AIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSC 611

Query: 642 RDYW 645
           + YW
Sbjct: 612 KGYW 615


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 224/686 (32%), Positives = 337/686 (49%), Gaps = 107/686 (15%)

Query: 47  VERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
           V ++C ++ +  +IH   +    M D  ++  +       G +  A+ +  +    ++  
Sbjct: 159 VLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGS 218

Query: 107 WNSIIENQLINGYPQEVFAIYLYL-----VTRTVLLNKC--------------------- 140
           WN++I     +G  +E   +   L     VT   LL+ C                     
Sbjct: 219 WNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 278

Query: 141 -----------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
                            G LK+  ++FD++  RD+ISWN++I  Y         + L  +
Sbjct: 279 ESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQE 338

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH-------LFLEESTMKISGSLLNYLVD 236
           M    + PD +T++SL S  ++L ++   +++         FLE+ T+       N +V 
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIG------NAVVV 392

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER------ 290
           MY K G +  A+ +     +   DV+ W T++SGY ++    EA  +++ M E       
Sbjct: 393 MYAKLGLVDSARAVFNW--LPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISA 450

Query: 291 NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------------ 338
           N  +W  ++             +C+  GAL  G+ +H  + KN + +D            
Sbjct: 451 NQGTWVSVL------------PACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYG 498

Query: 339 ---NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
               ++ A  LF +I   N   W ++IA +   GH +KA+ LF EM + G KPD +TF+ 
Sbjct: 499 KCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 558

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           LLSACSH GLVDEG          Y I P ++HYGCMVDL GRAG LE + NFI SMP+ 
Sbjct: 559 LLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQ 618

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
           PD SIW +LL ACR H NV L + A +HL E +P + G HVLL+N+YA AG+ + +  IR
Sbjct: 619 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIR 678

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG------ 569
                 GL+K  G+S +E    V  F +G+  +P  EE+Y  L  +   L+  G      
Sbjct: 679 SITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHR 738

Query: 570 --LQETS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVY 619
             LQ+          + H ERLA+AF LI+T  KTTIRI  NLR+CGDCHS  K  S++ 
Sbjct: 739 FVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKIT 798

Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
            REI++RD+ RFH F+ G CSC DYW
Sbjct: 799 EREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 227/505 (44%), Gaps = 75/505 (14%)

Query: 43  DVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP 102
           DV  + R C+++   + +H+ L+ +N +++  IS ++     + G++  A+         
Sbjct: 56  DVHTLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNR 115

Query: 103 EIKIWNSIIENQLINGYPQEVFAIY-LYLVT-------RTV--LLNKC------------ 140
           ++  WN +I      GY  EV   + L++++       RT   +L  C            
Sbjct: 116 DVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCL 175

Query: 141 -----------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
                                  G +     LFD++P RD+ SWN MIS Y   G  +E 
Sbjct: 176 ALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEA 235

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
           L L   + A     D VT+VSL+SA T+  D   G  +H +  +  ++    + N L+D+
Sbjct: 236 LTLSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLI 293
           Y + G + + QK+  R  +   D++ W +++  Y  + +   A  LF EM    ++ + +
Sbjct: 292 YAEFGSLKDCQKVFDRMYVR--DLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCL 349

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGA--LYHGIWVHVYIKKNQISIDNIEL-----AYDL 346
           +  + ++ +L+Q  E   ++C S+    L  G ++      N + +   +L     A  +
Sbjct: 350 T-LISLASILSQLGEI--RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAV 406

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK--PDQVTFIALLSACSHGG 404
           F+ +  K+V  W ++I+ YA  G A +AI+++  MEE G +   +Q T++++L ACS  G
Sbjct: 407 FNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAG 466

Query: 405 LVDEGYDF---LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
            + +G      L K     ++         + D+ G+ G L+++ +    +P    V  W
Sbjct: 467 ALRQGMKLHGRLLKNGLYLDVFVGTS----LADMYGKCGRLDDALSLFYQIPRVNSVP-W 521

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTE 486
           ++L+     H + + A   FK + +
Sbjct: 522 NTLIACHGFHGHGEKAVMLFKEMLD 546


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 220/715 (30%), Positives = 349/715 (48%), Gaps = 100/715 (13%)

Query: 11  TETIFE--PKLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTN 68
           +ET FE   K+ + G+VP  RI+          + V+    S +++   + +HS ++   
Sbjct: 208 SETAFEIFQKMEQEGVVPN-RITY---------ISVLNAFSSPAALKWGKAVHSRILNAG 257

Query: 69  LMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYL 128
              D  + T + +     G     +Q+  +    ++  WN++I      GY +E   +Y 
Sbjct: 258 HESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYN 317

Query: 129 YL---------VTRTVLLN--------------------------------------KCG 141
            +         +T  +LLN                                      +CG
Sbjct: 318 QMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCG 377

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            +K+   +FDK+  +DVISW  MI      G   E L +  +M   GV P+ VT  S+++
Sbjct: 378 SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILN 437

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
           A +    LE G+ +H  + E+ +     + N LV+MY  CG + +A+++  R  + + D+
Sbjct: 438 ACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDR--MIQRDI 495

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
           V +  ++ GY   N   EA +LFD + E  L    +    MLN        +CA+ G+L 
Sbjct: 496 VAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN--------ACANSGSLE 547

Query: 322 HGIWVHVYIKK----NQISIDNIEL-----------AYDLFSEISEKNVYLWTSVIAAYA 366
               +H  ++K    +  S+ N  +           A  +F +++++NV  W ++I   A
Sbjct: 548 WAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSA 607

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  Q A+ LF  M+  G KPD VTF++LLSACSH GL++EG  +    S+ + I P +
Sbjct: 608 QHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTI 667

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HYGCMVDLLGRAG L+E+   I +MP   +  IW +LL ACR H NV +AE A +   +
Sbjct: 668 EHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLK 727

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D  N   +V L+++YA AG  D  +++R  +   G+ K+ G S I+ G  +H F + D 
Sbjct: 728 LDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDR 787

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLIST 590
            +P SE+IY  L+ +   ++ +G                 +     H ERLA+A+GLIST
Sbjct: 788 SHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLIST 847

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              T I I  NLR+C DCH+  K  S++ +REI+ RD  RFH F+ G CSC DYW
Sbjct: 848 PPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 193/439 (43%), Gaps = 52/439 (11%)

Query: 132 TRTVLLN---KCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           T   L+N   +CG ++E  Q++ KL    R V SWN M+  Y   G   + L LL +M  
Sbjct: 60  TVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQ 119

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G++PD  T++S +S+      LE G+ +H    ++ +     + N +++MY KCG I E
Sbjct: 120 HGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEE 179

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN-- 304
           A+++  + E  +  VV WT  + GY      + A  +F +M +  ++   +    +LN  
Sbjct: 180 AREVFDKME--KKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAF 237

Query: 305 -QDAEFKYKSCASIGALYHG----IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359
              A  K+        L  G      V   + K      + +    +F ++  +++  W 
Sbjct: 238 SSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWN 297

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDE 408
           ++I   A  G+ ++A +++ +M+  G  P+++T++ LL+AC            H  +   
Sbjct: 298 TMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKA 357

Query: 409 GYD--------FLSKKSRVYNIK------PKMQH-----YGCMVDLLGRAGHLEESANFI 449
           G+          +S  SR  +IK       KM       +  M+  L ++G   E+    
Sbjct: 358 GFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVY 417

Query: 450 TSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV--LLANIYAK 504
             M    + P+   ++S+L AC     ++      + + E     D AHV   L N+Y+ 
Sbjct: 418 QEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATD-AHVGNTLVNMYSM 476

Query: 505 AGRLDDMSRI--RMKLRDM 521
            G + D  ++  RM  RD+
Sbjct: 477 CGSVKDARQVFDRMIQRDI 495



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 161/379 (42%), Gaps = 60/379 (15%)

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           L + GA+  S D + M+       +++DL  G+ +H  + +         +N L++MY +
Sbjct: 14  LQQQGAQVNSSDYMKMLKRC---IEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQ 70

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG I EA+++  +    E  V  W  +V GY++    ++A +L  +M +  L      I 
Sbjct: 71  CGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIM 130

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYD 345
             L+        SC S GAL  G  +H    +  +  D               +IE A +
Sbjct: 131 SFLS--------SCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEARE 182

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS---- 401
           +F ++ +K+V  WT  I  YA  G ++ A ++F +ME+ G  P+++T+I++L+A S    
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAA 242

Query: 402 -------HGGLVDEGYDF----------LSKKSRVYN---------IKPKMQHYGCMVDL 435
                  H  +++ G++           +  K   Y          +   +  +  M+  
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 302

Query: 436 LGRAGHLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           L   G+ EE++     M    + P+   +  LL AC     +   +     + +    +D
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSD 362

Query: 493 -GAHVLLANIYAKAGRLDD 510
            G    L ++Y++ G + D
Sbjct: 363 IGVQNALISMYSRCGSIKD 381


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 216/652 (33%), Positives = 325/652 (49%), Gaps = 113/652 (17%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV--FTGDLGYAQQIIRQGDEPEIKIWN 108
           CS+  + + IH+H++ T+L  D   ++++  F +   T  L YA ++  Q   P     N
Sbjct: 27  CSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNP-----N 81

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
             I N LI G                            C   +   N             
Sbjct: 82  LFIYNALIRG----------------------------CSTSENPEN------------- 100

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
            S   Y + L         G+ PD +T   L+ A  +L +  MG   H    +   +   
Sbjct: 101 -SFHYYIKALRF-------GLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDF 152

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            + N LV MY   G I  A+ +  R  +   DVV WT +++GY +  +   AR LFD M 
Sbjct: 153 YVQNSLVHMYASVGDINAARSVFQR--MCRFDVVSWTCMIAGYHRCGDAKSARELFDRMP 210

Query: 289 ERNLISWTLMISGMLNQDAEFK-----------------------YKSCASIGALYHGIW 325
           ERNL++W+ MISG    +   K                         SCA +GAL  G  
Sbjct: 211 ERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEK 270

Query: 326 VHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
            H Y+ +N++S++               N+E A  +F ++ EK+V  WT++IA  AM G+
Sbjct: 271 AHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGY 330

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
           A+KA+  F EM + G  P  +TF A+L+ACSH G+V+ G +      R + ++P+++HYG
Sbjct: 331 AEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYG 390

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           CMVDLLGRAG L ++  F+  MP+ P+  IW +LL ACR H+NV++ E   K L E  P 
Sbjct: 391 CMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPE 450

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
             G +VLL+NIYA+A +  D++ +R  ++D G++K  GYSLIE  G VH+FT GD  +P 
Sbjct: 451 YSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPE 510

Query: 551 SEEIY-----LMLNEIEMTLQQQGLQETSL------------QHRERLAVAFGLISTSEK 593
            E+I      ++L +I++        ET              +H E+LA+A+G++     
Sbjct: 511 IEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAP 570

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           T IRIV NLR+C DCH+  K+ S+V+  E+++RD  RFH F+ G CSC DYW
Sbjct: 571 TPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 197/550 (35%), Positives = 301/550 (54%), Gaps = 44/550 (8%)

Query: 130 LVTRTVLLNKCGKLKEVCQ---LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L+    LL  C K K++     LF+K+  RD +SW+ MI  +   G Y        ++  
Sbjct: 35  LIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIR 94

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G  PD  ++  +I A      L MG+ +H  + ++ + +   + + LVDMY KCG I  
Sbjct: 95  AGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDN 154

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A++L  R  + + D+V  T +++GY +  + +E+  LFD+M     +   + +  ++N  
Sbjct: 155 AKQLFDR--MPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVN-- 210

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +CA +GA+     VH Y+   + S+D               +I+ + ++F  + 
Sbjct: 211 ------ACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRME 264

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +KNV  W+++I AY   G  ++A++LF  M  +G  P+++TFI+LL ACSH GLVD+G  
Sbjct: 265 QKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQ 324

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
             S  S  Y ++P ++HY CMVDLLGRAG L+++   I +M +  D  IW + L ACR H
Sbjct: 325 LFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIH 384

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           + V LAE A K L      N G ++LL+NIYA AGR  D+++IR  +    LKK  GY+ 
Sbjct: 385 RQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTW 444

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------QETSL---- 575
           IE    +++F +GD  +  S EIY ML  +   L+  G             +E  L    
Sbjct: 445 IEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILH 504

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LA+AFGLI+T + T IRI  NLR+CGDCHSF K+ S +  R+I++RD  RFH F+
Sbjct: 505 AHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFK 564

Query: 636 GGQCSCRDYW 645
            G CSC DYW
Sbjct: 565 EGICSCGDYW 574



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 142/324 (43%), Gaps = 51/324 (15%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEV--DVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           ++ +   FKC  I + +++  +     +  D+++   L+    K  +   A  LF++M E
Sbjct: 4   DFFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEE 63

Query: 290 RNLISWTLMISGML-NQDAE----------------------FKYKSCASIGALYHGIWV 326
           R+ +SW++MI G + N D E                      F  K+C     L  G  +
Sbjct: 64  RDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLI 123

Query: 327 HVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H  + KN + +DN               I+ A  LF  + +K++   T +IA YA  G  
Sbjct: 124 HSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKP 183

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQH 428
            ++  LF +M   G  PD+V  + +++AC+  G +++    +D++   +R Y++  ++  
Sbjct: 184 NESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVC--ARRYSLDVELG- 240

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
              M+D+  + G ++ S      M    +V  WS+++ A   H   + A   F H+    
Sbjct: 241 -TAMIDMYAKCGSIDSSREIFDRME-QKNVISWSAMIGAYGYHGQGREALELF-HMMLNS 297

Query: 489 PLNDGAHVLLANIYA--KAGRLDD 510
            +       ++ +YA   AG +DD
Sbjct: 298 GIIPNRITFISLLYACSHAGLVDD 321


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 199/536 (37%), Positives = 295/536 (55%), Gaps = 58/536 (10%)

Query: 154 PNRDVISWNTMISCYT-----SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           P  +   WNT+I  +        G     + +  +M   GV PD  T   L+ +      
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L +G+++H  +    + I   +   L+ MY   G +  A+ L     + E +V+ W+ ++
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFA--VMPERNVISWSCMI 137

Query: 269 SGYVKSNERDEARRLFDEM-------VERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
           +GYV+  +  EA  LF EM       V  N       +SG+L         +C  +GAL 
Sbjct: 138 NGYVRCGQYKEALALFREMQMLGVNDVRPN----EFTMSGVL--------AACGRLGALE 185

Query: 322 HGIWVHVYIKKNQISID---------------NIELAYDLFSEIS-EKNVYLWTSVIAAY 365
           HG W H YI K  + +D               ++E A  +FS +   K+V  W+++I+  
Sbjct: 186 HGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGL 245

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
           AM G A++ + LF +M   G +P+ VTF+A+  AC HGGLV EG D+L + +  Y+I P 
Sbjct: 246 AMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPT 305

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
           +QHYGCMVDL GRAG ++E+ N + SMP+ PDV +W +LL   R H +++  E A K L 
Sbjct: 306 IQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLI 365

Query: 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
           E +P N GA+VLL+N+YAK GR +D+  +R  +  MG+KK  G SLIE GG +H+F  GD
Sbjct: 366 ELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGD 425

Query: 546 IFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLIS 589
             +P + +I++ML EI   L+ +G                +E +L  H E+LA+A+G + 
Sbjct: 426 DSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLK 485

Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           TS  T IRIV NLRIC DCH  +K+ S+V++REI++RD  RFH F  G CSCRDYW
Sbjct: 486 TSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 128/259 (49%), Gaps = 26/259 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM---GAEGVSPDEVTMVSLISART 204
            LF  +P R+VISW+ MI+ Y   G Y+E L L  +M   G   V P+E TM  +++A  
Sbjct: 120 NLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACG 179

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           +L  LE GK  H ++++  M +   L   L+DMY KCG + +A  +      ++ DV+ W
Sbjct: 180 RLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNK-DVMAW 238

Query: 265 TTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMI-----SGMLNQDAEFKYKSCA 315
           + ++SG       +E   LF +M+ +    N +++  +       G++++  ++  +   
Sbjct: 239 SAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTE 298

Query: 316 SIGAL----YHGIWVHVYIKKNQISIDNIELAYDLFSEIS-EKNVYLWTSVIAAYAMAGH 370
               +    ++G  V +Y +  +     I+ A+++   +  E +V +W ++++   M G 
Sbjct: 299 DYSIIPTIQHYGCMVDLYGRAGR-----IKEAWNVVKSMPMEPDVLVWGALLSGSRMHGD 353

Query: 371 AQK---AIDLFLEMEETGT 386
            +    A+   +E+E T +
Sbjct: 354 IETCELALKKLIELEPTNS 372


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 200/571 (35%), Positives = 302/571 (52%), Gaps = 70/571 (12%)

Query: 141 GKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           G++    +LFD++P  ++D + W T++S ++  G+    + L  +M  + V  D V++V 
Sbjct: 57  GEIATAQKLFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVC 116

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L     KL DL  G+  H    +     S  + N L+DMY KCG + E +++     ++E
Sbjct: 117 LFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIF--QALEE 174

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD---------AEF 309
             VV WT ++   VK       R +FDEM ERN+++WTLM++G L            AE 
Sbjct: 175 KSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEM 234

Query: 310 KYK---------------SCASIGALYHGIWVHVYIKKNQISID---------------- 338
            ++               +CA  G L  G WVHVY  K  + +                 
Sbjct: 235 VFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVD 294

Query: 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                 NI+ +  +F  + ++NV  W ++ +  AM G  +  ID+F EM     KPD +T
Sbjct: 295 MYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLT 353

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           F ALLSACSH G+VDEG+       + Y ++PK+ HY CMVD+LGRAG +EE+   +  M
Sbjct: 354 FTALLSACSHLGMVDEGWRCF-HSLQFYGLEPKVDHYACMVDILGRAGRIEEAEILMREM 412

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P+PP+  +  SLL +C  H  +++AE   + L +  P +    +L++N+Y   GR D   
Sbjct: 413 PVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIAD 472

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-- 570
            +R  LR+ G++K  G S I     VH+F+SGD  +P ++E+YL LNE+   ++  G   
Sbjct: 473 GLRGSLRNRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVP 532

Query: 571 --------QETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                    E  L+        H E+LAV FGL+ T  +T + +  NLRIC DCHS MK+
Sbjct: 533 DISGLVSPSEGDLEEKEQALCCHSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHSAMKI 592

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S+VY+REI+IRD  RFH+F+GG CSC DYW
Sbjct: 593 VSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 150/374 (40%), Gaps = 60/374 (16%)

Query: 209 LEMGKNLHLFLEESTMKIS--GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           L  G+ LH  L  S +K +    L N L   Y   G+I  AQKL     + + D V WTT
Sbjct: 22  LHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTT 81

Query: 267 LVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKY----------- 311
           L+S + +      + +LF EM    VE + +S   +  G+  +  + ++           
Sbjct: 82  LLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLF-GVCAKLEDLRFGEQGHGVAVKM 140

Query: 312 ------KSCASIGALYHGIWVHVYIKK------------------NQISIDNIELAYDLF 347
                 K C ++  +Y        +K+                    +  + ++   ++F
Sbjct: 141 GFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVF 200

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLV 406
            E+ E+NV  WT ++A Y  AG  ++ ++L  EM    G   + VT  ++LSAC+  G +
Sbjct: 201 DEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNL 260

Query: 407 DEGYDFLSKKSRVYNIKPKMQ------HYGCM-----VDLLGRAGHLEESANFITSMPIP 455
                 + +   VY +K  M       + G M     VD+  + G+++ S      M   
Sbjct: 261 -----VIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMR-K 314

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
            +V  W++L      H   ++    F  +      +D     L +  +  G +D+  R  
Sbjct: 315 RNVVTWNALFSGLAMHGKGRMVIDMFPEMVREVKPDDLTFTALLSACSHLGMVDEGWRCF 374

Query: 516 MKLRDMGLKKQLGY 529
             L+  GL+ ++ +
Sbjct: 375 HSLQFYGLEPKVDH 388



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 131/310 (42%), Gaps = 70/310 (22%)

Query: 136 LLNKCGKLKEVC-------------------------------QLFDKLPNRDVISWNTM 164
           +  KCG + EV                                ++FD++P R+V++W  M
Sbjct: 155 MYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLM 214

Query: 165 ISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           ++ Y   G  RE L LL++M    G   + VT+ S++SA  +  +L +G+ +H++  +  
Sbjct: 215 VAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKA 274

Query: 224 MKIS------GSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
           M +       G ++   LVDMY KCG I  + K+     + + +VV W  L SG     +
Sbjct: 275 MMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVF--RLMRKRNVVTWNALFSGLAMHGK 332

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
                 +F EMV R +    L  + +L+        +C+ +G +  G W   +  +    
Sbjct: 333 GRMVIDMFPEMV-REVKPDDLTFTALLS--------ACSHLGMVDEG-WRCFHSLQ---- 378

Query: 337 IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
                  Y L     E  V  +  ++     AG  ++A  L   M E    P++V   +L
Sbjct: 379 ------FYGL-----EPKVDHYACMVDILGRAGRIEEAEIL---MREMPVPPNEVVLGSL 424

Query: 397 LSACS-HGGL 405
           L +CS HG L
Sbjct: 425 LGSCSVHGKL 434



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 2/151 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +    ++F  +  R+V++WN + S     G  R  + +  +M  E V PD++T  +
Sbjct: 298 KCGNIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTA 356

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+SA + L  ++ G      L+   ++        +VD+  + G+I EA+ L+    +  
Sbjct: 357 LLSACSHLGMVDEGWRCFHSLQFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPP 416

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
            +VVL + L S  V   + + A R+  E+++
Sbjct: 417 NEVVLGSLLGSCSVH-GKLEIAERIKRELIQ 446


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 220/652 (33%), Positives = 339/652 (51%), Gaps = 79/652 (12%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           + +S  +  +IH  L   N+    ++ TQ          + YA  I ++      ++ NS
Sbjct: 51  ASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQR-----FELKNS 105

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
            + N LI G  +   + +   ++  VL+ K          +   P+R  +++  ++    
Sbjct: 106 YLFNALIRGLAEN--SRFESSISFFVLMLK----------WKISPDR--LTFPFVLKSAA 151

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
           ++     G  L   +   G+  D    VSL+    K+   E+G  L +F E      +GS
Sbjct: 152 ALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVE--ELGSALKVFDESPESVKNGS 209

Query: 230 LL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           +L  N L+  Y + G + +A +L     + + D   W +L++G++K  +   A+ LF +M
Sbjct: 210 VLIWNVLIHGYCRMGDLVKATELFD--SMPKKDTGSWNSLINGFMKMGDMGRAKELFVKM 267

Query: 288 VERNLISWTLMISG----------------MLNQDAE-------FKYKSCASIGALYHGI 324
            E+N++SWT M++G                ML + A            +CA IGAL  G+
Sbjct: 268 PEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGL 327

Query: 325 WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
            +H Y+  N   ++               NIE A  +F E  EK + +W+ +I  +A+ G
Sbjct: 328 RIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHG 387

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
           H +KA+  F  M+ TGTKPD V F+A+L+ACSH G V+EG  F     R Y I+P M+HY
Sbjct: 388 HFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHY 447

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
             +VD+LGRAG L+E+  FI +MPI PD  +W +L  ACR H+NV++AE A K L + +P
Sbjct: 448 TLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEP 507

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            + G++V L+N YA  GR DD  R+R+ +RD G  K  G+S IE    +H+F +GD  + 
Sbjct: 508 KHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHN 567

Query: 550 HSEEIYLMLNEIEMTLQQQGLQ---ETSLQ-------------HRERLAVAFGLISTSEK 593
            + EIY  L+EI  + +++G     E  L              H E+LA+AFG++ST   
Sbjct: 568 RAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPG 627

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           TT+RIV NLR+C DCHSFMK  S++  REI++RD  RFH F  G CSC DYW
Sbjct: 628 TTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/232 (19%), Positives = 98/232 (42%), Gaps = 24/232 (10%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P    ++    +C+ I   +   RIH++L       +  I T + +     G++ +A+++
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKV 364

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKL 143
             +  E  + IW+ +I    I+G+ ++    + ++         V    +LN C   G++
Sbjct: 365 FHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQV 424

Query: 144 KEVCQLFDKLPNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
            E  + FD +    +I      +  ++      G   E L  +  M    ++PD V   +
Sbjct: 425 NEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAM---PITPDFVVWGA 481

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           L  A    +++EM +     L +   K  GS + +L + Y   G+  +A+++
Sbjct: 482 LFCACRTHKNVEMAELASKKLLQLEPKHPGSYV-FLSNAYASVGRWDDAERV 532


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 198/563 (35%), Positives = 305/563 (54%), Gaps = 55/563 (9%)

Query: 124 FAIYLYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           +++    +++T L N        C   +   ++F  +  ++V+SW  MI+ YT  G+Y +
Sbjct: 322 YSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDK 381

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
             GL  +MG EG  PD   + S + A      L+ GK++H +   + M+   ++ N L++
Sbjct: 382 VAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALME 441

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLI 293
           MY KCG + EA+ +     +   D++ W TL+ GY ++N  +EA  LF EM+     N +
Sbjct: 442 MYVKCGNMEEAKLIFD--GVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPNAV 499

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY-IKKNQISIDNIE----------- 341
           + T ++             + AS+ +L  G  +H Y +++  +  D +            
Sbjct: 500 TMTCIL------------PAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCG 547

Query: 342 ---LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
              LA  LF  +S KN+  WT ++A Y M G  + AI LF +M  +G  PD  +F A+L 
Sbjct: 548 ALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILY 607

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACSH GL DEG+ F     + + I+P+++HY CMVDLL   G+L+E+  FI SMPI PD 
Sbjct: 608 ACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDS 667

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
           SIW SLLR CR H+NVKLAE   + + E +P N G +VLLANIYA+A R + + +++ K+
Sbjct: 668 SIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKI 727

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ------- 571
              GL++  G S IE  G VH F + +  +P    I   LNE+   +Q++G         
Sbjct: 728 GGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYAL 787

Query: 572 ---------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                    E    H  +LAVAFG+++ SE   IR+  N R+C  CH   K  S++ +RE
Sbjct: 788 MGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSRE 847

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           I++RD+ RFH F+ G+CSCR YW
Sbjct: 848 IILRDSNRFHHFEQGRCSCRGYW 870



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 167/371 (45%), Gaps = 45/371 (12%)

Query: 139 KCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           KCG L+   ++FD++P   DV  W  ++S Y   G  REG+ L  KM   GV PD  T+ 
Sbjct: 141 KCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTIS 200

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            ++     L  +E G+ +H  LE+       ++ N L+  Y K  +  +A  +L    + 
Sbjct: 201 CVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDA--ILVFDGMP 258

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCAS 316
             DV+ W +++SG   +   D+A  LF  M +E   +    ++S +          +CA 
Sbjct: 259 HRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVL---------PACAE 309

Query: 317 IGALYHGIWVHVYIKK----NQISIDNIELAYDLFSEIS-------------EKNVYLWT 359
           +  L+ G  VH Y  K    +Q S+ N+ L  D++S  S             +KNV  WT
Sbjct: 310 LHLLFLGRVVHGYSVKTGFISQTSLANVLL--DMYSNCSDWRSTNKIFRNMVQKNVVSWT 367

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I +Y  AG   K   LF EM   GT+PD     + L A +   L+  G     K    
Sbjct: 368 AMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHG-----KSVHG 422

Query: 420 YNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
           Y I+  M+        ++++  + G++EE A  I    +  D+  W++L+     +    
Sbjct: 423 YAIRNGMEKVLAVTNALMEMYVKCGNMEE-AKLIFDGVVSKDMISWNTLIGG---YSRNN 478

Query: 476 LAEHAFKHLTE 486
           LA  AF   TE
Sbjct: 479 LANEAFSLFTE 489



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 129/278 (46%), Gaps = 26/278 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K  + K+   +FD +P+RDVISWN+MIS  TS G+Y + + L  +M  EG   D  T++S
Sbjct: 243 KSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLS 302

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +L  L +G+ +H +  ++      SL N L+DMY  C       K+     + +
Sbjct: 303 VLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIF--RNMVQ 360

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +VV WT +++ Y ++   D+   LF EM           I+  L+  A  +        
Sbjct: 361 KNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNEL------- 413

Query: 319 ALYHGIWVHVYIKKNQ---------------ISIDNIELAYDLFSEISEKNVYLWTSVIA 363
            L HG  VH Y  +N                +   N+E A  +F  +  K++  W ++I 
Sbjct: 414 -LKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIG 472

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            Y+    A +A  LF EM     +P+ VT   +L A +
Sbjct: 473 GYSRNNLANEAFSLFTEM-LLQLRPNAVTMTCILPAAA 509



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 131/312 (41%), Gaps = 82/312 (26%)

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           D +P  DV   N  I      G   E LGLL   G++GV  D+ +  +++   +++R LE
Sbjct: 57  DWVPTSDV---NLHIQRLCRSGDLEEALGLL---GSDGV--DDRSYGAVLQLCSEVRSLE 108

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
            GK  H  +  S+                           LGR   D +D VL   LV  
Sbjct: 109 GGKRAHFLVRASS---------------------------LGR---DGMDNVLGQKLVLM 138

Query: 271 YVKSNERDEARRLFDEMVE-RNLISWTLMISGM--------------------LNQDA-- 307
           Y+K  + + ARR+FDEM +  ++  WT ++SG                     +  DA  
Sbjct: 139 YLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYT 198

Query: 308 -EFKYKSCASIGALYHGIWVHVYIKK----NQISIDNIELAYD-----------LFSEIS 351
                K  A +G++  G  VH  ++K    +Q ++ N  +A+            +F  + 
Sbjct: 199 ISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMP 258

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
            ++V  W S+I+     G   KAI+LF+ M   G + D  T +++L AC+   L+     
Sbjct: 259 HRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLL----- 313

Query: 412 FLSKKSRVYNIK 423
           FL +    Y++K
Sbjct: 314 FLGRVVHGYSVK 325


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 205/600 (34%), Positives = 332/600 (55%), Gaps = 69/600 (11%)

Query: 98  QGDEPEIKIWNSII----------ENQLINGYP-QEVFAIYLYLVTRTVLL-NKCGKLKE 145
           QG E E + ++S++          E Q ++ +  +  +   +YL TR ++L NKC  L +
Sbjct: 4   QGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGD 63

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
             ++ D++P R+V+SW  MIS Y+  G   E L L  +M   G +P+E T  +++++ T 
Sbjct: 64  ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS 123

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
               ++G+ +H  + +++ +    + + L+DMY K GKI EA+++     + E DVV  T
Sbjct: 124 SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFD--GLPERDVVSCT 181

Query: 266 TLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
            ++SGY +    +EA    RRL  E +  N +++  +++ +            + + AL 
Sbjct: 182 AIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTAL------------SGLAALD 229

Query: 322 HGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
           HG  VH ++ + ++          ID      ++  +  +F  + E+ V  W +++  Y+
Sbjct: 230 HGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYS 289

Query: 367 MAGHAQKAIDLF-LEMEETGTKPDQVTFIALLSACSHGGLVDEG----YDFLSKKSRVYN 421
             G  ++A++LF L  EE   KPD VTF+A+LS CSHGG+ D G    Y+ +++K     
Sbjct: 290 KHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKD---G 346

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            +P+++HYGC+VDL GRAG +EE+  FI  MP  P  +IW SLL ACR HQNV + E   
Sbjct: 347 FEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVA 406

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           + L E +  N G +V+L+N+YA AGR DD+  +R  +++  + K+ G S IE    +H F
Sbjct: 407 RRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTF 466

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAF 585
            + D  +P  EE++  + E+ + +++ G                +E  LQ H E+LA+AF
Sbjct: 467 HASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAF 526

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GLI T   T +RI+ NLRIC DCH+F K  S+VY RE+ +RD  RFH   GG CSC DYW
Sbjct: 527 GLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 147/337 (43%), Gaps = 39/337 (11%)

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           MG +G+  +     S+++       +  G+ +H  + ++  +    L   L+ +Y KC  
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           +G+A+++L   E+ E +VV WT ++SGY +     EA  LF EM          ++SG  
Sbjct: 61  LGDARRVLD--EMPERNVVSWTAMISGYSQRGYASEALHLFVEM----------LMSGTA 108

Query: 304 NQDAEFK--YKSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDL 346
             +  F     SC S      G  +H  + K                      I  A  +
Sbjct: 109 PNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRV 168

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  + E++V   T++I+ YA  G  ++A+DLF  ++  G + + VT+ ++L+A S    +
Sbjct: 169 FDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAAL 228

Query: 407 DEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           D G     ++   + ++ K+  Y      ++D+  + G L  S     SMP    +S W+
Sbjct: 229 DHG-----RQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS-WN 282

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499
           ++L     H   + A   FK + E + +   +   LA
Sbjct: 283 AMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLA 319


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 203/578 (35%), Positives = 304/578 (52%), Gaps = 73/578 (12%)

Query: 136 LLNKCGK------LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG--LGLLSKMGAE 187
           L+N C +      L    +LFD +P  D   +NT+I  +    +      L L S M   
Sbjct: 60  LINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQN 119

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
            V P+  T  SL+ A    R ++ G  +H  L +         LN L+ MY     + EA
Sbjct: 120 SVLPNNFTFPSLLIA---CRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEA 176

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD- 306
           +++   + I   D V WT+L+SGY K    DEA  +F  M ++N  SW  M++  +  + 
Sbjct: 177 RRVF--HTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNR 234

Query: 307 -----------------------AEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---- 339
                                  A     +C  +GAL  G W+H YIK+N I +D+    
Sbjct: 235 FHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTT 294

Query: 340 -----------IELAYDLFSEISEKNVYL--WTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                      +E A  +F  +     ++  W  +I   AM G+ + AI LF EME    
Sbjct: 295 AIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRV 354

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
            PD +TF+ LL+AC+H GLV+EG ++ S   RVY I+P+M+H+GCMVDLLGRAG + E+ 
Sbjct: 355 APDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEAR 414

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             I  MP+ PDV++  +LL AC+ H+N++L E   + + E +P N G +VLLAN+YA AG
Sbjct: 415 KLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAG 474

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
           + +D +++R  + D G+KK  G+S+IE  G VH+F +G+  +P ++E++  + E+   L+
Sbjct: 475 KWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLK 534

Query: 567 QQGL-------------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
             G                    +     H E+LA+AFGL  T    T+RI+ NLRIC D
Sbjct: 535 SVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICED 594

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CH   K+ S V++REI++RD  RFHRF+ GQCSC+DYW
Sbjct: 595 CHHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 304/545 (55%), Gaps = 69/545 (12%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG L    ++F+K+  R+V+SW +MI+ YT  G     + LL +M  EGV  D V 
Sbjct: 295 MYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVA 354

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++ A  +   L+ GK++H +++ + M+ +  + N L+DMY KCG +           
Sbjct: 355 TTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSM----------- 403

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK---YK 312
                                 D A  +F  MV +++ISW  MI G L  D+        
Sbjct: 404 ----------------------DGANSVFSTMVVKDIISWNTMI-GELKPDSRTMACILP 440

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYL 357
           +CAS+ AL  G  +H YI +N  S D                + LA  LF  I  K++  
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           WT +I+ Y M G+  +AI  F EM + G +PD+V+FI++L ACSH GL+++G+ F     
Sbjct: 501 WTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             +NI+PK++HY CMVDLL R G+L ++  FI ++PI PD +IW +LL  CR + +++LA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELA 620

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E   + + E +P N G +VLLANIYA+A + +++ R+R K+   GL+K  G S IE  G 
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGK 680

Query: 538 VHKFTSG-DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRER 580
           V+ F SG +  +PHS++I  +L ++   ++++G                +E +L  H E+
Sbjct: 681 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEK 740

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFGL++   + T+R+  NLR+CGDCH   K  S+   REIV+RD+ RFH F+ G CS
Sbjct: 741 LAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCS 800

Query: 641 CRDYW 645
           CR +W
Sbjct: 801 CRGFW 805



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 174/380 (45%), Gaps = 52/380 (13%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           S+ + +++HS + + N+  D  +  ++       GDL   +++    ++  + +WN ++ 
Sbjct: 114 SLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVS 173

Query: 113 NQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE-VCQLFDKLPNRDVISWNTMISCYTSM 171
                G  +E   ++  +V + +     GK  E   +LFDKL +RDVISWN+MIS Y S 
Sbjct: 174 EYAKIGDFKESICLFKIMVEKGIE----GKRPESASELFDKLCDRDVISWNSMISGYVSN 229

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G+   GL +  +M   G+  D  T++S++        L +GK +H    +ST +   +  
Sbjct: 230 GLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFS 289

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L+DMY KCG +  A ++  +  + E +VV WT++++GY +    D A RL  +M +  
Sbjct: 290 NTLLDMYSKCGDLDGALRVFEK--MGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEG 347

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS 351
           +    +  + +L+        +CA  G+L +G  VH YIK N +                
Sbjct: 348 VKLDVVATTSILH--------ACARSGSLDNGKDVHDYIKANNM---------------- 383

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT----------KPDQVTFIALLSACS 401
           E N+++  +++  Y   G    A  +F  M               KPD  T   +L AC+
Sbjct: 384 ESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACA 443

Query: 402 -----------HGGLVDEGY 410
                      HG ++  GY
Sbjct: 444 SLSALERGKEIHGYILRNGY 463



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 25/258 (9%)

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
           VD VL   LVS Y    +  E RR+FD M ++N+  W  M+S       E+     A IG
Sbjct: 132 VDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVS-------EY-----AKIG 179

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
                I +   + +  I     E A +LF ++ +++V  W S+I+ Y   G  ++ ++++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIY 239

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF--LSKKSRVYNIKPKMQHYGCMVDLL 436
            +M   G   D  T I++L  C++ G +  G     L+ KS     + ++     ++D+ 
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS---TFERRINFSNTLLDMY 296

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLL----RACRCHQNVKLAEHAFKHLTETDPLND 492
            + G L+ +      M    +V  W+S++    R  R    ++L +   K   + D +  
Sbjct: 297 SKCGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVV-- 353

Query: 493 GAHVLLANIYAKAGRLDD 510
            A   + +  A++G LD+
Sbjct: 354 -ATTSILHACARSGSLDN 370


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 202/665 (30%), Positives = 331/665 (49%), Gaps = 77/665 (11%)

Query: 54   IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
            +++ + IH   +   +  D  ++T +       G+   A+Q+       ++  W++II  
Sbjct: 345  LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 114  QLINGYPQEVFAIYLY-------------------------------------------- 129
             +  GYP+E  +++                                              
Sbjct: 405  LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 130  LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
            L T T L++   KCG        F+++ +RD+++WN++I+ Y  +G     + +  K+  
Sbjct: 465  LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 187  EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
              ++PD  TMV ++ A   L DL+ G  +H  + +   +    + N L+DMY KCG +  
Sbjct: 525  SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 247  AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
            A+ L  + +  + D V W  +++ Y+++    EA   F +M   N    ++    +L   
Sbjct: 585  AEFLFNKTDFTK-DEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAA 643

Query: 307  AEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI--------ELAYD--LFSEISEKNVY 356
            A   Y +    G  +H   + +    N +  +++        +L Y   LF+E+  K+  
Sbjct: 644  A---YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTV 700

Query: 357  LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
             W ++++ YA+ GH  +AI LF  M+E+  + D V+F+++LSAC H GLV+EG       
Sbjct: 701  SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSM 760

Query: 417  SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            S  Y+IKP ++HY CMVDLLGRAG  +E+  FI  MP+ PD  +W +LL +CR H NVKL
Sbjct: 761  SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKL 820

Query: 477  AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
             E A  HL + +P N    V+L++IYA++GR  D  + R K+ D+GLKK  G S +E   
Sbjct: 821  GEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880

Query: 537  FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETS--------LQHRER 580
             VH F  GD  +P  E ++L+ N +   +++ G        LQ             H ER
Sbjct: 881  KVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSER 940

Query: 581  LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
            LA+ F L++T   +TI+IV NLR+C DCH+  K  S++  R I++RD  RFH F+ G CS
Sbjct: 941  LAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICS 1000

Query: 641  CRDYW 645
            C DYW
Sbjct: 1001 CNDYW 1005



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 108/477 (22%), Positives = 199/477 (41%), Gaps = 71/477 (14%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF-TGDLGYAQQIIRQGDEPEIKIWN 108
           SC  ++   +IH+ +I +       I+  +  + +F   DL  A+ +      P   +WN
Sbjct: 41  SCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDL--ARSVFDSTPNPSRILWN 98

Query: 109 SIIENQLINGYPQEVFAIYLYLV---------TRTVLLNKC------------------- 140
           S+I     +    E   +Y  +V         T T +L  C                   
Sbjct: 99  SMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRR 158

Query: 141 -------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                              G LK   ++FDK+P RDV++WN MI+  +      E +   
Sbjct: 159 GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFF 218

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
             M   GV P  V++++L     KL ++E+ +++H ++       S ++ N L+D+Y KC
Sbjct: 219 RSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKC 276

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-------IS 294
           G +  A+++  +  +D+ DV  W T+++GY  +    E   LFD+M   N+       +S
Sbjct: 277 GDVDVARRVFDQM-VDQDDVS-WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVS 334

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKN 354
             L  +  ++ +   +   CA    +   I V   +          E A  LF  +  ++
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           +  W+++IAA    G+ ++A+ LF EM+    KP++VT +++L AC+   L+      L 
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLK-----LG 449

Query: 415 KKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           K    + +K  M         +V +  + G    +      M    D+  W+SL+  
Sbjct: 450 KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLING 505


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/592 (33%), Positives = 302/592 (51%), Gaps = 91/592 (15%)

Query: 143 LKEVCQLFDKLPNRDVISW-------------------------------NTMISCYTSM 171
           + E  +LFD++PNRD +SW                               N MIS Y   
Sbjct: 208 MAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHR 267

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK----IS 227
           G+Y E   +  KM    +  DE T  S+IS         +GK +H +  ++       ++
Sbjct: 268 GLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVA 327

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             + N L+  Y+KCGK+  AQ++  +  + E D+V W  ++SGYV     DEA+  F+EM
Sbjct: 328 MPVNNALITFYWKCGKVDIAQEIFNK--MPERDLVSWNIILSGYVNVRCMDEAKSFFNEM 385

Query: 288 VERNLISWTLMISGMLN-------------------QDAEFKYK----SCASIGALYHGI 324
            E+N++SW +MISG+                     +  ++ +     SC+ +G+L HG 
Sbjct: 386 PEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGR 445

Query: 325 WVHV----YIKKNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
            +H     Y  ++ +S  N           ++ A+ LF  +   +   W ++IAA    G
Sbjct: 446 QLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHG 505

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
              +AI+LF EM + G  PD+++F+ ++SACSH GLV EG  +      VY + P  +HY
Sbjct: 506 QGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHY 565

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
             ++DLL RAG   E+   + SMP  P   IW +LL  CR H N+ L   A + L E  P
Sbjct: 566 ARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKP 625

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            +DG +VLL+N+YA AG+ +DM+++R  +RD G+KK+ G S IE    VH F  GD  +P
Sbjct: 626 QHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHP 685

Query: 550 HSEEIYLMLNEIEMTLQQQG---------------LQETSLQ-HRERLAVAFGLISTSEK 593
              +IY  L ++ + +++ G               L+E  L  H E+LAVA+G +     
Sbjct: 686 EVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHG 745

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            T+R+  NLRICGDCH+  K  S+V  REIV+RD  RFH F+ G+CSC DYW
Sbjct: 746 ATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/518 (20%), Positives = 196/518 (37%), Gaps = 112/518 (21%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+H+I +       I  ++ +    +  L YA+ +  +  +P+I     +    LI  Y
Sbjct: 35  VHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDI-----VARTTLIAAY 89

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREG 177
                             +  G LK   ++F   P   RD + +N MI+ Y+        
Sbjct: 90  ------------------SAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAA 131

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVD 236
           + L   M  +   PD  T  S++ A   + + E   + LH  + +S      S+LN L+ 
Sbjct: 132 IELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALIS 191

Query: 237 MYFKCGK---------IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            Y KC           + EA+KL    E+   D + WTT+++GYVK+N+ D A+   +  
Sbjct: 192 SYVKCAASPSAQSSSLMAEARKLFD--EMPNRDELSWTTIITGYVKNNDLDAAKEFLNGT 249

Query: 288 VERNLISWTLMISGMLN-------------------QDAEFKYKS----CASIGALYHGI 324
            ++  ++W  MISG  +                   Q  EF + S    CA+ G    G 
Sbjct: 250 SKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGK 309

Query: 325 WVHVYIKKN--------------------------------------------------Q 334
            +H Y  K                                                    
Sbjct: 310 EMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGY 369

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           +++  ++ A   F+E+ EKN+  W  +I+  A  G A++A+  F  M+  G +P    F 
Sbjct: 370 VNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFA 429

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
             + +CS  G +  G    ++  R Y  +  +     ++ +  R G ++ +     +MP 
Sbjct: 430 GAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPC 488

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
              +S W++++ A   H     A   F+ + +   L D
Sbjct: 489 VDAIS-WNAMIAALGQHGQGTQAIELFEEMLKEGILPD 525



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 157/386 (40%), Gaps = 68/386 (17%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVF----TGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           + +H++ + T     P ++  V   L+      G +  AQ+I  +  E ++  WN I+  
Sbjct: 309 KEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSG 368

Query: 114 QLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173
                          Y+  R         + E    F+++P ++++SW  MIS    +G 
Sbjct: 369 ---------------YVNVRC--------MDEAKSFFNEMPEKNILSWIIMISGLAQIGF 405

Query: 174 YREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY 233
             E L   ++M  +G  P +      I + + L  L+ G+ LH  +     + S S  N 
Sbjct: 406 AEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNA 465

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL- 292
           L+ MY +CG +  A  L     +  VD + W  +++   +  +  +A  LF+EM++  + 
Sbjct: 466 LITMYARCGVVDAAHCLF--INMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGIL 523

Query: 293 ---ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349
              IS+  +IS            +C+  G           +K+ +   D++   Y +  +
Sbjct: 524 PDRISFLTVIS------------ACSHAG----------LVKEGRKYFDSMHNVYGVNPD 561

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
                   +  +I     AG   +A ++   ME    +P    + ALL+ C   G +D G
Sbjct: 562 EEH-----YARIIDLLCRAGKFSEAKEV---MESMPFEPGAPIWEALLAGCRIHGNIDLG 613

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDL 435
              +    R++ +KP  QH G  V L
Sbjct: 614 ---IEAAERLFELKP--QHDGTYVLL 634



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 78/397 (19%), Positives = 154/397 (38%), Gaps = 96/397 (24%)

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           + + +H  +  S  +  G +LN L+D+Y K  K+  A+ L    EI + D+V  TTL++ 
Sbjct: 31  LARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFD--EIPQPDIVARTTLIAA 88

Query: 271 YVKSNERDEARRLFDE--MVERNLISWTLMISGMLN--------------QDAEFK---Y 311
           Y  + +   +R++F +  +  R+ + +  MI+   +              Q   F+   Y
Sbjct: 89  YSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNY 148

Query: 312 KSCASIGALY-------HGIWVHVYIKKNQISIDNIEL---------------------- 342
              + +GAL        H   +H  + K+        L                      
Sbjct: 149 TFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLM 208

Query: 343 --AYDLFSEISEKNVYLWTSVIAAYA--------------------------MAGHAQK- 373
             A  LF E+  ++   WT++I  Y                           ++G+A + 
Sbjct: 209 AEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRG 268

Query: 374 ----AIDLFLEMEETGTKPDQVTFIALLSACSHGG---LVDEGYDFLSKKSRVYNIKP-- 424
               A ++F +M  +  + D+ TF +++S C++ G   L  E + +  K   V N  P  
Sbjct: 269 LYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKT--VANPAPDV 326

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            M     ++    + G ++ +      MP   D+  W+ +L     + NV+  + A    
Sbjct: 327 AMPVNNALITFYWKCGKVDIAQEIFNKMP-ERDLVSWNIILSG---YVNVRCMDEAKSFF 382

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRI--RMKLR 519
            E    N  + +++ +  A+ G  ++  +   RMKL+
Sbjct: 383 NEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQ 419


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 206/654 (31%), Positives = 335/654 (51%), Gaps = 82/654 (12%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVF--EFLVFTGDLGYAQQIIRQGDEPEIKIW 107
           +C S+   +++H+++  T L  DP I+ ++     +     L YA+++      P++ + 
Sbjct: 14  NCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMH 73

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
           N++I     +  PQ     ++ +  R                       D  S+  ++  
Sbjct: 74  NTLIRGLAESDTPQNSLITFVEMRRRLT------------------APLDSFSFAFLLKA 115

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
             S      G+ L  +    G+        +L+S  ++   +   K +     E   + +
Sbjct: 116 AASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVF----EEMFEPN 171

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
               N +V   F+CG +  A  +  R      ++  W  +++GY K+ E + AR+LF EM
Sbjct: 172 VVAWNAVVTACFRCGDVKGADMMFNRMPFR--NLTSWNVMLAGYTKAGELELARKLFLEM 229

Query: 288 VERNLISWTLMISGMLNQDAEFK-----------------------YKSCASIGALYHGI 324
             ++ +SW+ MI G  +    ++                         +CA  GA+  G 
Sbjct: 230 PVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGK 289

Query: 325 WVHVYIKKN----QISIDN-----------IELAYDLFSEISEK-NVYLWTSVIAAYAMA 368
            +H +I+K+     +S++N           + +A  +F  + EK ++  WTS+IA  AM 
Sbjct: 290 ILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMH 349

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G+ ++AI LF EMEE+G +PD + FI++L ACSH GL+++GY++  K   +YNI+P ++H
Sbjct: 350 GYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEH 409

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           YGCMVDL GRAG L+++  FI  MP+ P   IW +LL AC  H NVKLAE   + L+E D
Sbjct: 410 YGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELD 469

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           P N G HVLL+NIYA AG+  D++ +R  + D  + K  G+S+IE    ++ F +G++ N
Sbjct: 470 PNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQN 529

Query: 549 PHSEEIYLMLNEIEMTLQQQGL-----------------QETSLQHRERLAVAFGLISTS 591
             +EE Y  L EI + L+ +G                  +++  +H E+LAVAFG+    
Sbjct: 530 SITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLC 589

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + + IRIV NLR+C DCH+ MK+ S+VY  EIV+RD  RFH F+ G CSCRDYW
Sbjct: 590 KGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 202/665 (30%), Positives = 331/665 (49%), Gaps = 77/665 (11%)

Query: 54   IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
            +++ + IH   +   +  D  ++T +       G+   A+Q+       ++  W++II  
Sbjct: 345  LEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAA 404

Query: 114  QLINGYPQEVFAIYLY-------------------------------------------- 129
             +  GYP+E  +++                                              
Sbjct: 405  LVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 130  LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
            L T T L++   KCG        F+++ +RD+++WN++I+ Y  +G     + +  K+  
Sbjct: 465  LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 187  EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
              ++PD  TMV ++ A   L DL+ G  +H  + +   +    + N L+DMY KCG +  
Sbjct: 525  SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 247  AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
            A+ L  + +  + D V W  +++ Y+++    EA   F +M   N    ++    +L   
Sbjct: 585  AEFLFNKTDFTK-DEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAA 643

Query: 307  AEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI--------ELAYD--LFSEISEKNVY 356
            A   Y +    G  +H   + +    N +  +++        +L Y   LF+E+  K+  
Sbjct: 644  A---YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTV 700

Query: 357  LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
             W ++++ YA+ GH  +AI LF  M+E+  + D V+F+++LSAC H GLV+EG       
Sbjct: 701  SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSM 760

Query: 417  SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            S  Y+IKP ++HY CMVDLLGRAG  +E+  FI  MP+ PD  +W +LL +CR H NVKL
Sbjct: 761  SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKL 820

Query: 477  AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
             E A  HL + +P N    V+L++IYA++GR  D  + R K+ D+GLKK  G S +E   
Sbjct: 821  GEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880

Query: 537  FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETS--------LQHRER 580
             VH F  GD  +P  E ++L+ N +   +++ G        LQ             H ER
Sbjct: 881  KVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSER 940

Query: 581  LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
            LA+ F L++T   +TI+IV NLR+C DCH+  K  S++  R I++RD  RFH F+ G CS
Sbjct: 941  LAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICS 1000

Query: 641  CRDYW 645
            C DYW
Sbjct: 1001 CNDYW 1005



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 108/477 (22%), Positives = 199/477 (41%), Gaps = 71/477 (14%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF-TGDLGYAQQIIRQGDEPEIKIWN 108
           SC  ++   +IH+ +I +       I+  +  + +F   DL  A+ +      P   +WN
Sbjct: 41  SCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDL--ARSVFDSTPNPSRILWN 98

Query: 109 SIIENQLINGYPQEVFAIYLYLV---------TRTVLLNKC------------------- 140
           S+I     +    E   +Y  +V         T T +L  C                   
Sbjct: 99  SMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRR 158

Query: 141 -------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                              G LK   ++FDK+P RDV++WN MI+  +      E +   
Sbjct: 159 GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFF 218

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
             M   GV P  V++++L     KL ++E+ +++H ++       S ++ N L+D+Y KC
Sbjct: 219 RSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKC 276

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-------IS 294
           G +  A+++  +  +D+ DV  W T+++GY  +    E   LFD+M   N+       +S
Sbjct: 277 GDVDVARRVFDQM-VDQDDVS-WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVS 334

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKN 354
             L  +  ++ +   +   CA    +   I V   +          E A  LF  +  ++
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           +  W+++IAA    G+ ++A+ LF EM+    KP++VT +++L AC+   L+      L 
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLK-----LG 449

Query: 415 KKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           K    + +K  M         +V +  + G    +      M    D+  W+SL+  
Sbjct: 450 KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLING 505


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 206/586 (35%), Positives = 309/586 (52%), Gaps = 74/586 (12%)

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFD 151
           A+Q     +  ++  WN+II      GY Q                   GK+ E  QLFD
Sbjct: 238 ARQFFDSMNVRDVVSWNTII-----TGYAQS------------------GKIDEARQLFD 274

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           + P +DV +W  M+S Y    M  E   L  KM       +EV+  ++++   +   +EM
Sbjct: 275 ESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEM 330

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
            K L   +    +    S  N ++  Y +CGKI EA+ L  +  + + D V W  +++GY
Sbjct: 331 AKELFDVMPCRNV----STWNTMITGYAQCGKISEAKNLFDK--MPKRDPVSWAAMIAGY 384

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA-EFKYKSCASIGALYHGIWVHVYI 330
            +S    EA RLF +M ER          G LN+ +      +CA + AL  G  +H  +
Sbjct: 385 SQSGHSFEALRLFVQM-ERE--------GGRLNRSSFSSALSTCADVVALELGKQLHGRL 435

Query: 331 KKNQ---------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            K                     +IE A DLF E++ K++  W ++IA Y+  G  + A+
Sbjct: 436 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVAL 495

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
             F  M+  G KPD  T +A+LSACSH GLVD+G  +    ++ Y + P  QHY CMVDL
Sbjct: 496 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDL 555

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           LGRAG LE++ N + +MP  PD +IW +LL A R H N +LAE A   +   +P N G +
Sbjct: 556 LGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMY 615

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           VLL+N+YA +GR  D+ ++R+++RD G+KK  GYS IE     H F+ GD F+P  +EI+
Sbjct: 616 VLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIF 675

Query: 556 LMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTSEKTTIRIV 599
             L E+++ +++ G + +TS+                H ERLAVA+G++  S    IR++
Sbjct: 676 AFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVI 735

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C DCH+ +K  +++  R I++RDN RFH F+ G CSC DYW
Sbjct: 736 KNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 127/556 (22%), Positives = 229/556 (41%), Gaps = 112/556 (20%)

Query: 107 WNSIIENQLINGY----------------PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLF 150
           W+S+  N +I+GY                P+     +  ++   V     GK +E   LF
Sbjct: 93  WSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARE---LF 149

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           + +P RDV SWNTM+S Y   G   +   +  +M  +    ++V+  +L+SA  +   +E
Sbjct: 150 EIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKME 205

Query: 211 MGKNLHLFLEESTMKISGSLL---------------------------NYLVDMYFKCGK 243
               L    E   +     LL                           N ++  Y + GK
Sbjct: 206 EACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK 265

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           I EA++L     +   DV  WT +VSGY+++   +EAR LFD+M ERN +SW  M++G +
Sbjct: 266 IDEARQLFDESPVQ--DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYV 323

Query: 304 NQDAE------FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYL 357
             +        F    C ++      I  +    K       I  A +LF ++ +++   
Sbjct: 324 QGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK-------ISEAKNLFDKMPKRDPVS 376

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLV 406
           W ++IA Y+ +GH+ +A+ LF++ME  G + ++ +F + LS C+           HG LV
Sbjct: 377 WAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 436

Query: 407 DEGYD---FLSKKSRVYNIK----------------PKMQHYGCMVDLLGRAGHLEESAN 447
             GY+   F+     +   K                  +  +  M+    R G  E +  
Sbjct: 437 KGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALR 496

Query: 448 FITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIY 502
           F  SM    + PD +   ++L AC     V      F  +T+   +  N   +  + ++ 
Sbjct: 497 FFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLL 556

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQ-------LGYSLIEQGGFVHKFTSGDIF--NPHSEE 553
            +AG L+D   +   +++M  +         LG S +     + +  +  IF   P +  
Sbjct: 557 GRAGLLEDAHNL---MKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSG 613

Query: 554 IYLMLNEIEMTLQQQG 569
           +Y++L+ +  +  + G
Sbjct: 614 MYVLLSNLYASSGRWG 629



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 48/261 (18%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N  +  Y + G+  EA ++  R  +     V +  ++SGY+++ E + AR+LFDEM ER+
Sbjct: 68  NVAISSYMRTGRCNEALRVFKR--MPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERD 125

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS 351
           L+SW +MI G                           Y++       N+  A +LF  + 
Sbjct: 126 LVSWNVMIKG---------------------------YVRNR-----NLGKARELFEIMP 153

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           E++V  W ++++ YA  G    A  +F  M E     + V++ ALLSA      ++E   
Sbjct: 154 ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACM 209

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
               +         +  + C++    +   + E+  F  SM +  DV  W++++      
Sbjct: 210 LFKSRENW-----ALVSWNCLLGGFVKKKKIVEARQFFDSMNV-RDVVSWNTIITG--YA 261

Query: 472 QNVKLAEHAFKHLTETDPLND 492
           Q+ K+ E   + L +  P+ D
Sbjct: 262 QSGKIDEA--RQLFDESPVQD 280


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 324/601 (53%), Gaps = 59/601 (9%)

Query: 91  YAQQIIRQGD-EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----VLLN------ 138
           Y   +I  G  EPE  +++ ++         ++  AI+ ++ + T     VLLN      
Sbjct: 91  YVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMY 150

Query: 139 -KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            KCG L+E   LFDK+P +D++SW  +IS Y+  G   E L L  KM   G  P+E T+ 
Sbjct: 151 AKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLS 210

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           SL+ A         G+ LH F  +    ++  + + L+DMY +   + EA+ +     + 
Sbjct: 211 SLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFN--SLA 268

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
             +VV W  L++G+ +  E +   RLF +M+ +         S +        + +CAS 
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSV--------FTACASS 320

Query: 318 GALYHGIWVHVYIKKN---------QISID------NIELAYDLFSEISEKNVYLWTSVI 362
           G+L  G WVH ++ K+            ID      +I+ A  +F  + ++++  W S+I
Sbjct: 321 GSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSII 380

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--YDFLSKKSRVY 420
           + YA  G   +A+ LF +M +   +P+++TF+++L+ACSH GL+DEG  Y  L KK   +
Sbjct: 381 SGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK---H 437

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I+ ++ H+  +VDLLGRAG L E+  FI  MPI P  ++W +LL +CR H+N+ L  +A
Sbjct: 438 KIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYA 497

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + + E DP + G HVLL+NIYA AGRL D +++R  +++ G+KK+   S +E    VH 
Sbjct: 498 AEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHV 557

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVA 584
           F + D  +P  EEI  M  +I   +++ G                +E  LQ H E+LA+A
Sbjct: 558 FVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALA 617

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F ++ T    TIRI  N+RICGDCHS  K  S+V  REI++RD  RFH F  G CSCRDY
Sbjct: 618 FAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDY 677

Query: 645 W 645
           W
Sbjct: 678 W 678


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 315/559 (56%), Gaps = 58/559 (10%)

Query: 128  LYLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
            +YL TR ++L NKC  L +  ++ D++P R+V+SW  MIS Y+  G   E L L  +M  
Sbjct: 512  VYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLM 571

Query: 187  EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
             G +P+E T  +++++ T     ++G+ +H  + +++ +    + + L+DMY K GKI E
Sbjct: 572  SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICE 631

Query: 247  AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMISGM 302
            A+++     + E DVV  T ++SGY +    +EA    RRL  E +  N +++  +++ +
Sbjct: 632  ARRVFD--GLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTAL 689

Query: 303  LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLF 347
                        + + AL HG  VH ++ + ++          ID      ++  +  +F
Sbjct: 690  ------------SGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIF 737

Query: 348  SEISEKNVYLWTSVIAAYAMAGHAQKAIDLF-LEMEETGTKPDQVTFIALLSACSHGGLV 406
              + E+ V  W +++  Y+  G  ++A++LF L  EE   KPD VTF+A+LS CSHGG+ 
Sbjct: 738  DSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGME 797

Query: 407  DEG----YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            D G    Y+ +++K      +P+++HYGC+VDL GRAG +EE+  FI  MP  P  +IW 
Sbjct: 798  DRGLEIFYEMVNQKD---GFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWG 854

Query: 463  SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
            SLL ACR HQNV + E   + L E +  N G +V+L+N+YA AGR DD+  +R  +++  
Sbjct: 855  SLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKA 914

Query: 523  LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------ 570
            + K+ G S IE    +H F + D  +P  EE++  + E+ + +++ G             
Sbjct: 915  VIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVD 974

Query: 571  ---QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
               +E  LQ H E+LA+AFGLI T   T +RI+ NLRIC DCH+F K  S+VY RE+ +R
Sbjct: 975  DEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLR 1034

Query: 627  DNGRFHRFQGGQCSCRDYW 645
            D  RFH   GG CSC DYW
Sbjct: 1035 DKNRFHHIVGGTCSCGDYW 1053



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 149/340 (43%), Gaps = 39/340 (11%)

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           L +MG +G+  +     S+++       +  G+ +H  + ++  +    L   L+ +Y K
Sbjct: 465 LLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNK 524

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           C  +G+A+++L   E+ E +VV WT ++SGY +     EA  LF EM          ++S
Sbjct: 525 CRCLGDARRVLD--EMPERNVVSWTAMISGYSQRGYASEALHLFVEM----------LMS 572

Query: 301 GMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELA 343
           G    +  F     SC S      G  +H  + K                      I  A
Sbjct: 573 GTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEA 632

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             +F  + E++V   T++I+ YA  G  ++A+DLF  ++  G + + VT+ ++L+A S  
Sbjct: 633 RRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGL 692

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVS 459
             +D G     ++   + ++ K+  Y      ++D+  + G L  S     SMP    +S
Sbjct: 693 AALDHG-----RQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS 747

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499
            W+++L     H   + A   FK + E + +   +   LA
Sbjct: 748 -WNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLA 786


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 196/569 (34%), Positives = 306/569 (53%), Gaps = 68/569 (11%)

Query: 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE-GLGLLSK-M 184
           + Y ++R +L++          +F+ +PN  +  +NT+IS   ++  +      L S+ +
Sbjct: 40  HTYPLSRILLISSTIVFTHALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVL 99

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL----FLEESTMK-ISGSLLNYLVDMYF 239
               + P+  T  SL  A      L  G+ LH     FLE +    +  +LLNY    Y 
Sbjct: 100 THTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDPFVQAALLNY----YA 155

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD--------EARRLFDEM---- 287
           KCGK+G  + L    +I + D+  W +++S YV ++           E   LF EM    
Sbjct: 156 KCGKVGACRYLFN--QISKPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSL 213

Query: 288 VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-------- 339
           ++ N ++   +IS            +CA +GAL  G W HVY+ K+ + +++        
Sbjct: 214 IKANEVTLVALIS------------ACAELGALSQGAWAHVYVLKHNLKLNHFVGTALID 261

Query: 340 -------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  ++LA  LF ++  ++   + ++I  +A+ G+  +A+DLF +M   G  PD VT
Sbjct: 262 MYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVT 321

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
            +  + +CSH GLV+EG D       VY ++PK++HYGC+VDLLGRAG L E+   + +M
Sbjct: 322 LVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNM 381

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P+ P+  IW SLL A R H N+++ E   KHL + +P   G +VLL+N+YA   R DD+ 
Sbjct: 382 PMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVK 441

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE 572
           R+R  ++D G+ K  G SL+E GG +H+F  GD  +P S+EIYL L E+   L + G + 
Sbjct: 442 RVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKP 501

Query: 573 TSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
            +L+                H ERLA+AF LI++     IRI+ NLR+CGDCH+  K+ S
Sbjct: 502 RTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLIS 561

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++Y REI++RD  RFH F+ G CSC DYW
Sbjct: 562 KIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 290/552 (52%), Gaps = 57/552 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD     D   WN MI  ++        L L  +M       +  T  SL+ A + L  
Sbjct: 71  VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA 130

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            E    +H  + +   +     +N L++ Y   G    A  L  R  I E D V W +++
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDR--IPEPDDVSWNSVI 188

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQDAE---- 308
            GYVK+ + D A  LF +M E+N ISWT MISG                M N D E    
Sbjct: 189 KGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNV 248

Query: 309 ---FKYKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEI 350
                  +CA +GAL  G W+H Y+ K +I +D++               E A ++F  I
Sbjct: 249 SLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNI 308

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            +K+V  WT++I+ YA  GH ++AI  F+EM++ G KP+ +TF A+L+ACS+ GLV+EG 
Sbjct: 309 KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGK 368

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
                  R YN+KP ++HYGC+VDLLGRAG L+E+  FI  MP+ P+  IW +LL+ACR 
Sbjct: 369 LIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRI 428

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           H+N++L E   + L   DP + G +V  ANI+A   + D  +  R  +++ G+ K  G S
Sbjct: 429 HKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCS 488

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----LQETSL----------- 575
            I   G  H+F +GD  +P  E+I      +   L++ G    L+E  L           
Sbjct: 489 TISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAI 548

Query: 576 --QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
             QH E+LA+ +GLI T   T IRI+ NLR+C DCH   K+ S++Y R+IV+RD  RFH 
Sbjct: 549 VHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHH 608

Query: 634 FQGGQCSCRDYW 645
           F+ G+CSC DYW
Sbjct: 609 FRDGKCSCGDYW 620


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 208/621 (33%), Positives = 323/621 (52%), Gaps = 75/621 (12%)

Query: 90  GYAQQIIRQGDEPEIK---IWNSIIENQLINGYPQEVFAIY-----LYLVTRTVLLN--- 138
           GY ++     DE   K    WN ++   + NG  ++   ++       L++   ++    
Sbjct: 156 GYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYV 215

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K  +L +   +FD++P RD +SWNTMIS Y   G   E   L      E    D  T  +
Sbjct: 216 KRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFE----ESPVRDVFTWTA 271

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++S   +   L+  + +   + E    +S    N ++  Y +C ++ +A++L        
Sbjct: 272 MVSGYVQNGMLDEARRVFDGMPEKN-SVS---WNAIIAGYVQCKRMDQARELFEAMPCQN 327

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------------L 303
           V    W T+++GY ++ +  +AR  FD M +R+ ISW  +I+G                +
Sbjct: 328 VSS--WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385

Query: 304 NQDAEFKYKS--------CASIGALYHGIWVHVYIKKNQI---------------SIDNI 340
            +D E   +S        CA I AL  G  VH  + K  +                  NI
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 445

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           + AY +F  I EK V  W ++IA YA  G  ++A+ LF  M++TG  PD VT + +LSAC
Sbjct: 446 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 505

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLVD+G ++    ++ Y I    +HY CM+DLLGRAG L+++ N + +MP  PD + 
Sbjct: 506 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAAT 565

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           W +LL A R H N +L E A K + E +P N G +VLL+N+YA +GR  D+ R+R+++RD
Sbjct: 566 WGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRD 625

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---- 575
            G+KK  GYS +E    +H FT GD  +P  + IY  L E+++ ++++G +  T L    
Sbjct: 626 RGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHD 685

Query: 576 -----------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                       H E+LAVAFG+++      IR++ NLR+C DCH+ MK  S++  R I+
Sbjct: 686 VEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLII 745

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD+ RFH F GGQCSC DYW
Sbjct: 746 LRDSHRFHHFNGGQCSCGDYW 766



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 120/483 (24%), Positives = 214/483 (44%), Gaps = 95/483 (19%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTR-----TVLLNKCGK---LKEVCQLFDKLPNRDV 158
           WN++I   L N        ++  + TR      V+++ C +   L+    LFD++P RDV
Sbjct: 83  WNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDV 142

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           +SWN M+S Y   G  +E   +  +M  +    + ++   +++A  +   +E  +   LF
Sbjct: 143 VSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDAR--RLF 196

Query: 219 LEESTMK-ISGSLL-------NYLVDM---------------------YFKCGKIGEAQK 249
             ++  + IS + +       N LVD                      Y + G++ EAQ+
Sbjct: 197 ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQR 256

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM-----LN 304
           L     +   DV  WT +VSGYV++   DEARR+FD M E+N +SW  +I+G      ++
Sbjct: 257 LFEESPVR--DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMD 314

Query: 305 QDAE-FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA 363
           Q  E F+   C ++ +     W  +     Q    +I  A + F  + +++   W ++IA
Sbjct: 315 QARELFEAMPCQNVSS-----WNTMITGYAQNG--DIAQARNFFDRMPQRDSISWAAIIA 367

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYD- 411
            YA +G+ ++A+ LF+EM+  G + ++ TF + LS C+           HG +V  G + 
Sbjct: 368 GYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 427

Query: 412 -------FLSKKSRVYNI-----------KPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
                   L    +  NI           + ++  +  M+    R G  +E+     SM 
Sbjct: 428 GCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMK 487

Query: 454 ----IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYAKAGR 507
               +P DV++   +L AC     V      F  +T+   +  N   +  + ++  +AGR
Sbjct: 488 KTGILPDDVTM-VGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGR 546

Query: 508 LDD 510
           LDD
Sbjct: 547 LDD 549



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 67/372 (18%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+     +LF+ +P R  ISWN MIS   S   +     L  KM     + D V+   +I
Sbjct: 63  GQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM----PTRDLVSWNVMI 118

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           S   + R+L   +                    L D                  ++ E D
Sbjct: 119 SGCVRYRNLRAAR-------------------LLFD------------------QMPERD 141

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKSCAS 316
           VV W  ++SGY ++    EA+ +FDEM  +N ISW  M++  +     +DA   ++S A 
Sbjct: 142 VVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKAD 201

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
              +     +  Y+K+N++ +D    A  +F  + E++   W ++I+ YA  G   +A  
Sbjct: 202 WELISWNCMMGGYVKRNRL-VD----ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQR 256

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF   EE+  + D  T+ A++S     G++DE         RV++  P+         + 
Sbjct: 257 LF---EESPVR-DVFTWTAMVSGYVQNGMLDEA-------RRVFDGMPEKNSVSWNAIIA 305

Query: 437 G--RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
           G  +   ++++     +MP   +VS W++++     + ++  A + F  + + D ++  A
Sbjct: 306 GYVQCKRMDQARELFEAMPC-QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAA 364

Query: 495 HVLLANIYAKAG 506
             ++A  YA++G
Sbjct: 365 --IIAG-YAQSG 373



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 148/359 (41%), Gaps = 70/359 (19%)

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIEN-----------QLINGYPQEVFAIYLYLVTRT 134
            G+L  AQ++  +    ++  W +++             ++ +G P++    +  ++   
Sbjct: 248 NGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGY 307

Query: 135 VLLNKCGKLKEV-----CQ-----------------------LFDKLPNRDVISWNTMIS 166
           V   +  + +E+     CQ                        FD++P RD ISW  +I+
Sbjct: 308 VQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 367

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            Y   G   E L L  +M  +G   +  T  S +S   ++  LE+GK +H  + ++ ++ 
Sbjct: 368 GYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 427

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
              + N L+ MY KCG I +A  +     I+E +VV W T+++GY +     EA  LF+ 
Sbjct: 428 GCYVGNALLVMYCKCGNIDDAYIVF--EGIEEKEVVSWNTMIAGYARHGFGKEALMLFES 485

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346
           M +  ++   + + G+L+        +C+  G +  G                 E  Y +
Sbjct: 486 MKKTGILPDDVTMVGVLS--------ACSHTGLVDKG----------------TEYFYSM 521

Query: 347 FSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-HG 403
             +     N   +T +I     AG    A +L   M+    +PD  T+ ALL A   HG
Sbjct: 522 TQDYGITANSKHYTCMIDLLGRAGRLDDAQNL---MKNMPFEPDAATWGALLGASRIHG 577



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 121/258 (46%), Gaps = 16/258 (6%)

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           + D+V W   ++ ++++ + D A RLF+ M  R+ ISW  MISG L+ D  +  +     
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 318 GALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
                 +  +V I    +   N+  A  LF ++ E++V  W ++++ YA  G+ ++A ++
Sbjct: 106 MPTRDLVSWNVMI-SGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEI 164

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F EM       + +++  +L+A    G +++       K+       ++  + CM+    
Sbjct: 165 FDEM----PCKNSISWNGMLAAYVQNGRIEDARRLFESKA-----DWELISWNCMMGGYV 215

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHV 496
           +   L ++      MP   +VS W++++      QN +L E   + L E  P+ D     
Sbjct: 216 KRNRLVDARGIFDRMPERDEVS-WNTMISG--YAQNGELLEA--QRLFEESPVRDVFTWT 270

Query: 497 LLANIYAKAGRLDDMSRI 514
            + + Y + G LD+  R+
Sbjct: 271 AMVSGYVQNGMLDEARRV 288


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 307/574 (53%), Gaps = 69/574 (12%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           +K+ + +  N +I GY Q                   G++ E  QLFD+ P  DV +W  
Sbjct: 240 MKVRDVVSWNTIITGYAQN------------------GEIDEARQLFDESPVHDVFTWTA 281

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           M+S Y    M  E   L  +M       +EV+  ++++   +   +EM K L   +    
Sbjct: 282 MVSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELFDVMPCRN 337

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           +    S  N ++  Y +CGKI EA+ L  +  + + D V W  +++GY +S    EA RL
Sbjct: 338 V----STWNTMITGYAQCGKISEAKNLFDK--MPKRDPVSWAAMIAGYSQSGHSYEALRL 391

Query: 284 FDEMVERNLISWTLMISGMLNQDA-EFKYKSCASIGALYHGIWVHVYIKKNQISID---- 338
           F  ++ER          G LN+ +      +CA + AL  G  +H  + K          
Sbjct: 392 F-VLMERE--------GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG 442

Query: 339 -----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
                      +IE A DLF E++ K++  W ++IA Y+  G  ++A+  F  M+  G K
Sbjct: 443 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLK 502

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD  T +A+LSACSH GLVD+G  +    ++ Y ++P  QHY CMVDLLGRAG LEE+ N
Sbjct: 503 PDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHN 562

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
            + +MP  PD +IW +LL A R H N +LAE A   +   +P N G +VLL+N+YA +GR
Sbjct: 563 LMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGR 622

Query: 508 LDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567
             D+ ++R+++RD G+KK  GYS IE     H F+ GD F+P  +EI+  L ++++ +++
Sbjct: 623 WGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKK 682

Query: 568 QG-LQETSL---------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
            G + +TS+                H ERLAVA+G++  S    IR++ NLR+C DCH+ 
Sbjct: 683 AGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNA 742

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +K  ++V  R I++RDN RFH F+ G CSC DYW
Sbjct: 743 IKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 127/556 (22%), Positives = 236/556 (42%), Gaps = 112/556 (20%)

Query: 107 WNSIIENQLINGY----------------PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLF 150
           W+S+  N +I+GY                P+     +  ++   V     GK +E   LF
Sbjct: 88  WSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARE---LF 144

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           +++P RDV SWNT++S Y   G   +   +  +M  +    ++V+  +L+SA  +   LE
Sbjct: 145 ERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK----NDVSWNALLSAYVQNSKLE 200

Query: 211 MG-------KNLHL---------FLEES----------TMKISGSL-LNYLVDMYFKCGK 243
                    +N  L         F+++           +MK+   +  N ++  Y + G+
Sbjct: 201 EACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGE 260

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           I EA++L     +   DV  WT +VSGY+++   +EAR LFD M ERN +SW  M++G +
Sbjct: 261 IDEARQLFDESPVH--DVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYV 318

Query: 304 NQDAE------FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYL 357
             +        F    C ++      I  +    K       I  A +LF ++ +++   
Sbjct: 319 QGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGK-------ISEAKNLFDKMPKRDPVS 371

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLV 406
           W ++IA Y+ +GH+ +A+ LF+ ME  G + ++ +F + LS C+           HG LV
Sbjct: 372 WAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 431

Query: 407 DEGYD---FLSKKSRVYNIK----------------PKMQHYGCMVDLLGRAGHLEESAN 447
             GY+   F+     +   K                  +  +  M+    R G  EE+  
Sbjct: 432 KGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALR 491

Query: 448 FITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIY 502
           F  SM    + PD +   ++L AC     V      F  +T+   +  N   +  + ++ 
Sbjct: 492 FFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLL 551

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQ-------LGYSLIEQGGFVHKFTSGDIF--NPHSEE 553
            +AG L++   +   +++M  +         LG S +     + +  +  IF   P +  
Sbjct: 552 GRAGLLEEAHNL---MKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSG 608

Query: 554 IYLMLNEIEMTLQQQG 569
           +Y++L+ +  +  + G
Sbjct: 609 MYVLLSNLYASSGRWG 624



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 159/369 (43%), Gaps = 74/369 (20%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G+  E  ++F ++P    +S+N MIS Y   G +     L           DE+    
Sbjct: 71  RTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLF----------DEMPERD 120

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+S                              N ++  Y +   +G+A++L  R  + E
Sbjct: 121 LVS-----------------------------WNVMIKGYVRNRNLGKARELFER--MPE 149

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            DV  W T++SGY ++   D+ARR+FD M E+N +SW  ++S  + Q+++ + ++C   G
Sbjct: 150 RDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYV-QNSKLE-EACVLFG 207

Query: 319 ALYHGIWVHV--------YIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           +  +  W  V        ++KK +I    +E A   F  +  ++V  W ++I  YA  G 
Sbjct: 208 SREN--WALVSWNCLLGGFVKKKKI----VE-ARQFFDSMKVRDVVSWNTIITGYAQNGE 260

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQ 427
             +A  LF E        D  T+ A++S      +V+E    +D + +++ V        
Sbjct: 261 IDEARQLFDE----SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEV-------- 308

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
            +  M+    +   +E +      MP   +VS W++++        +  A++ F  + + 
Sbjct: 309 SWNAMLAGYVQGERVEMAKELFDVMPC-RNVSTWNTMITGYAQCGKISEAKNLFDKMPKR 367

Query: 488 DPLNDGAHV 496
           DP++  A +
Sbjct: 368 DPVSWAAMI 376



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 48/261 (18%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N  +  Y + G+  EA ++  R  +     V +  ++SGY+++ E + AR LFDEM ER+
Sbjct: 63  NVAISSYMRTGRCSEALRVFKR--MPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERD 120

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS 351
           L+SW +MI G                           Y++       N+  A +LF  + 
Sbjct: 121 LVSWNVMIKG---------------------------YVRNR-----NLGKARELFERMP 148

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           E++V  W ++++ YA  G    A  +F  M E     + V++ ALLSA      ++E   
Sbjct: 149 ERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK----NDVSWNALLSAYVQNSKLEEACV 204

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
               +         +  + C++    +   + E+  F  SM +  DV  W++++      
Sbjct: 205 LFGSRENW-----ALVSWNCLLGGFVKKKKIVEARQFFDSMKV-RDVVSWNTIITG--YA 256

Query: 472 QNVKLAEHAFKHLTETDPLND 492
           QN ++ E   + L +  P++D
Sbjct: 257 QNGEIDEA--RQLFDESPVHD 275


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 304/557 (54%), Gaps = 57/557 (10%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L     L+N   K G L++  + F ++   DV+SWN++I+ Y          G   KM  
Sbjct: 351 LFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL 410

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIG 245
            G  PD +T+VSL S   + RD +  +++H F+      +   ++ N +VDMY K G + 
Sbjct: 411 NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD 470

Query: 246 EAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVE-----RNLISWTLMI 299
            A K+   +EI  V DV+ W TL++GY ++    EA  ++  M E      N  +W  ++
Sbjct: 471 SAHKV---FEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAY 344
                          A +GAL  G+ +H  + K  + +D                +  A 
Sbjct: 528 PAY------------AHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAM 575

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF ++ +++   W ++I+ + + GHA+K + LF EM + G KPD VTF++LLSACSH G
Sbjct: 576 SLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
            V+EG  +  +  + Y IKP ++HYGCMVDLLGRAG+LE + +FI  MP+ PD SIW +L
Sbjct: 636 FVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGAL 694

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           L ACR H N++L + A   L E D  N G +VLL+NIYA  G+ + + ++R   R+ GLK
Sbjct: 695 LGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK 754

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETS-- 574
           K  G+S IE    V  F +G+  +P  +EIY  L  +   ++  G        LQ+    
Sbjct: 755 KTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEED 814

Query: 575 ------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDN 628
                   H ERLA+AFG+IST  K+ IRI  NLR+CGDCH+  K  S++  REIV+RD+
Sbjct: 815 EKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDS 874

Query: 629 GRFHRFQGGQCSCRDYW 645
            RFH F+ G CSC DYW
Sbjct: 875 NRFHHFKDGICSCGDYW 891



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 214/482 (44%), Gaps = 63/482 (13%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+ L+    ++   IST++       GD+  ++    Q  + ++  WNS+I   + NG+
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 120 PQEVFAIYLYLV----------TRTVLLNKCGKL----KEVC------------------ 147
             E    +  L+          T   +L  CG L    K  C                  
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLI 257

Query: 148 -------------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
                         LFD +P RD+ SWN MIS     G   + L +L +M  EG+  + V
Sbjct: 258 HMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFV 317

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T+VS++    +L D+     +HL++ +  ++    + N L++MY K G + +A+K   + 
Sbjct: 318 TVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFK 310
            I   DVV W ++++ Y ++++   A   F +M     + +L++  + ++ ++ Q  + K
Sbjct: 378 FI--TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLT-LVSLASIVAQSRDCK 434

Query: 311 YKSCASIGALYHGIWVHVYIKKNQI-----SIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
                    +  G  +   +  N +      +  ++ A+ +F  I  K+V  W ++I  Y
Sbjct: 435 NSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGY 494

Query: 366 AMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           A  G A +AI+++  MEE     P+Q T++++L A +H G + +G     +  +  N+  
Sbjct: 495 AQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT-NLHL 553

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            +    C++D+ G+ G L ++ +    +P    V+ W++++    CH     AE   K  
Sbjct: 554 DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT-WNAII---SCHGIHGHAEKTLKLF 609

Query: 485 TE 486
            E
Sbjct: 610 GE 611



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 187/438 (42%), Gaps = 68/438 (15%)

Query: 115 LINGYPQEVFA----IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS 170
           ++ G  Q +F     + LY     V L++C         FD++P +DV +WN+MIS Y  
Sbjct: 143 VVAGKVQSIFISTRLVNLYANLGDVSLSRC--------TFDQIPQKDVYAWNSMISAYVH 194

Query: 171 MGMYREGLGLLSK-MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
            G + E +G   + +    + PD  T   ++ A   L D   G+ +H +  +   + +  
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVF 251

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-V 288
           +   L+ MY + G  G A+ L    ++   D+  W  ++SG +++    +A  + DEM +
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFD--DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------- 338
           E   +++  ++S +           C  +G +   + +H+Y+ K+ +  D          
Sbjct: 310 EGIKMNFVTVVSIL---------PVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINM 360

Query: 339 -----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                N+E A   F ++   +V  W S+IAAY        A   F++M+  G +PD +T 
Sbjct: 361 YAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTL 420

Query: 394 IALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
           ++L S  +           HG ++  G+  L +   + N          +VD+  + G L
Sbjct: 421 VSLASIVAQSRDCKNSRSVHGFIMRRGW--LMEDVVIGN---------AVVDMYAKLGLL 469

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLAN 500
           + +      +P+  DV  W++L+     +     A   +K + E   +  N G  V +  
Sbjct: 470 DSAHKVFEIIPV-KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528

Query: 501 IYAKAGRLDDMSRIRMKL 518
            YA  G L    +I  ++
Sbjct: 529 AYAHVGALQQGMKIHGRV 546



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 49/250 (19%)

Query: 69  LMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY- 127
           LM D  I   V +     G L  A ++       ++  WN++I     NG   E   +Y 
Sbjct: 449 LMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYK 508

Query: 128 --------------------------------------------LYLVTRTVLLN---KC 140
                                                       L +   T L++   KC
Sbjct: 509 MMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKC 568

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L +   LF ++P    ++WN +ISC+   G   + L L  +M  EGV PD VT VSL+
Sbjct: 569 GRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLL 628

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           SA +    +E GK     ++E  +K S      +VD+  + G +  A   +    + + D
Sbjct: 629 SACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPL-QPD 687

Query: 261 VVLWTTLVSG 270
             +W  L+  
Sbjct: 688 ASIWGALLGA 697


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 220/687 (32%), Positives = 348/687 (50%), Gaps = 126/687 (18%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGDLGYAQQII 96
           P+SL    +E+ C S+ + ++IHSH I   L  DP    +V  F     +G++ YA Q+ 
Sbjct: 10  PISL----LEK-CKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVF 64

Query: 97  RQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV--------------------- 135
                P + IWN++I+      +P+   ++YL ++T  +                     
Sbjct: 65  DTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQ 124

Query: 136 ----LLNK----------------------CGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
               LLN                       CG +    ++FD     +V++WN M+S Y 
Sbjct: 125 HGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYN 184

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
            +  ++     +SK            M+ ++SA +KL+DLE GK++  +       I+G 
Sbjct: 185 RVKQFK-----ISK------------MLLVLSACSKLKDLEWGKHIFKY-------INGG 220

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           ++ +   M+  CG++ EAQ +    +    DVV WT ++ GY++ N    A  LF EM  
Sbjct: 221 IVEH---MFAACGEMDEAQGVFDNMKTR--DVVSWTAMIDGYLRMNHFIGALALFREMQM 275

Query: 290 RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----------- 338
            N+      +  +L         +CA +GAL  G WV   I KN    D           
Sbjct: 276 SNVKPDEFTMVSIL--------IACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMY 327

Query: 339 ----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
               N+  A  +F E+ +K+ + WT++I   A+ GH ++A+ +F  M E    PD++T+I
Sbjct: 328 FKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYI 387

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +L AC    +VD+G  F +  +  + IKP + HYGCMVDLLG  G LEE+   I +MP+
Sbjct: 388 GVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPV 443

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            P+  +W S L ACR H+NV+LA+ A K + E +P N   +VLL NIYA + + +++ ++
Sbjct: 444 KPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQV 503

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---- 570
           R  + + G+KK  G SL+E  G V++F +GD  +P S+EIY  L  +   L + G     
Sbjct: 504 RKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDT 563

Query: 571 -----------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                      +ET+L +H E+LA+A+ LIS+    TIRIV NLR+C DCH   K+ SQ 
Sbjct: 564 SEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQA 623

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
           YNRE++++D  RFH F+ G CSC ++W
Sbjct: 624 YNRELIVKDKTRFHHFRHGSCSCNNFW 650


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 207/637 (32%), Positives = 332/637 (52%), Gaps = 78/637 (12%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI----IRQGDEPEI 104
           R+  ++  F R    ++   +  D    + V    V  GD   A  +    ++ G + E+
Sbjct: 150 RAAEAVGLFGR----MVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDEL 205

Query: 105 KIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164
            + N++I+                       +  K G L+EV ++FD + +RD+++WN++
Sbjct: 206 FVCNAMID-----------------------VYGKLGMLEEVRKVFDGMSSRDLVTWNSI 242

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           IS +   G     + +   M   GVSPD +T++SL SA  +  D+  G+++H ++     
Sbjct: 243 ISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGW 302

Query: 225 KISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
            +   +  N +VDMY K  KI  AQ++     +   D V W TL++GY+++    EA  +
Sbjct: 303 DVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVR--DAVSWNTLITGYMQNGLASEAIHV 360

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISID--- 338
           +D M +           G+      F     + + +GAL  G  +H    K  +++D   
Sbjct: 361 YDHMQKHE---------GLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYV 411

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        ++ A  LF +   ++   W +VI+   + GH  KA+ LF +M++ G 
Sbjct: 412 GTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGI 471

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
            PD VTF++LL+ACSH GLVD+G +F +     Y IKP  +HY CMVD+ GRAG L+++ 
Sbjct: 472 SPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAF 531

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
           +FI +MPI PD +IW +LL ACR H NV++ + A ++L E DP N G +VL++N+YAK G
Sbjct: 532 DFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVG 591

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN--PHSEEIYLMLNEIEMT 564
           + D +  +R  +R   L+K  G+S IE    V+ F SG+  N  P  EEI   L ++   
Sbjct: 592 KWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAK 651

Query: 565 LQQQG--------LQETSL--------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDC 608
           ++  G        LQ+            H ERLA+AFG+I+T  +T + I  NLR+CGDC
Sbjct: 652 IRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDC 711

Query: 609 HSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           H+  K  S++  REI++RD+ RFH F+ G CSC D+W
Sbjct: 712 HNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 120/526 (22%), Positives = 221/526 (42%), Gaps = 86/526 (16%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G++++  + FD++ +RDV +WN M+S         E +GL  +M  EGV+ D VT+ S++
Sbjct: 118 GRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVL 177

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
                L D  +   +HL+  +  +     + N ++D+Y K G + E +K+     +   D
Sbjct: 178 PMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFD--GMSSRD 235

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           +V W +++SG+ +  +   A  +F  M +  +    L +  + +        + A  G +
Sbjct: 236 LVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLAS--------AIAQCGDI 287

Query: 321 YHGIWVHVY-----------IKKNQI-----SIDNIELAYDLFSEISEKNVYLWTSVIAA 364
             G  VH Y           I  N I      +  IE A  +F  +  ++   W ++I  
Sbjct: 288 CGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITG 347

Query: 365 YAMAGHAQKAIDLFLEMEE-TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           Y   G A +AI ++  M++  G KP Q TF+++L A SH G + +G      +    +IK
Sbjct: 348 YMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQG-----TRMHALSIK 402

Query: 424 PKMQ---HYG-CMVDLLGRAGHLEESANFITSMP-------------------------- 453
             +    + G C++DL  + G L+E+       P                          
Sbjct: 403 TGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSL 462

Query: 454 --------IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA--HVLLANIYA 503
                   I PD   + SLL AC     V    + F  +     +   A  +  + +++ 
Sbjct: 463 FSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFG 522

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQ-------LGYSLIEQGGFVHKFTSGDIF--NPHSEEI 554
           +AG+LDD       +R+M +K         LG   I     + K  S ++F  +P +   
Sbjct: 523 RAGQLDDAFDF---IRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGY 579

Query: 555 YLMLNEIEMTLQQ-QGLQET-SLQHRERLAVAFGLISTSEKTTIRI 598
           Y++++ +   + +  G+ E  SL  R+ L    G  S   K ++ +
Sbjct: 580 YVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNV 625


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 304/530 (57%), Gaps = 42/530 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            LFD++P  D++ +NTM   Y           L +++   G+ PD+ T  SL+ A    +
Sbjct: 76  HLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCK 135

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            LE G+ LH    +  +  +  +   L++MY  C ++  A+++  +  I E  VV +  +
Sbjct: 136 ALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDK--IWEPCVVTYNAM 193

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++GY + +  +EA  LF E+  RNL    + +  +L+        SCA +GAL  G W+H
Sbjct: 194 ITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLS--------SCALLGALDLGKWMH 245

Query: 328 VYIKKNQ----ISID-----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            Y+KKN     + +D           +++ A  +F  ++ ++   W+++I AYA+ GH  
Sbjct: 246 EYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGL 305

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           KA+ LF EM + GT+PD++TF+ LL ACSH GLV+EG+++       Y + P ++HYGCM
Sbjct: 306 KAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCM 365

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAG LEE+  FI  +PI P   +W +LL AC  H NV+L +   + + E D  + 
Sbjct: 366 VDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHG 425

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G +++L+N+ A+AGR +D++ +R  + + G+ K  G S +E    VH+F SGD  +  S 
Sbjct: 426 GDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVST 485

Query: 553 EIYLMLNEIEMTLQQQGL----------------QETSLQ-HRERLAVAFGLISTSEKTT 595
           +++  L+E+   L+  G                 +E +L+ H E+LA+ FGL++T   TT
Sbjct: 486 KLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTT 545

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IR+V NLR+CGDCHS  K+ S +++R+I++RD  RFH F+ G+CSC DYW
Sbjct: 546 IRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/421 (20%), Positives = 173/421 (41%), Gaps = 78/421 (18%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF---TGDLGYAQQIIRQGDEPEIKIW 107
           C+S+ E +++ +  I T+L  D  + T+   F      T  + +A  +  Q  +P+I ++
Sbjct: 30  CTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLF 89

Query: 108 NSIIENQLINGYPQEVFAIYLYLV---------TRTVLLNKCGKLKE------------- 145
           N++         P   F ++  ++         T   LL  C   K              
Sbjct: 90  NTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIK 149

Query: 146 --------VC-----------------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
                   VC                 ++FDK+    V+++N MI+ Y       E L L
Sbjct: 150 LGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSL 209

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             ++ A  + P +VTM+S++S+   L  L++GK +H +++++       +   L+DMY K
Sbjct: 210 FRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAK 269

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWT 296
           CG + +A  +     +   D   W+ ++  Y       +A  LF EM     E + I++ 
Sbjct: 270 CGSLDDAVCVFENMAVR--DTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFL 327

Query: 297 LMI-----SGMLNQDAEFKY----KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLF 347
            ++     +G++ +  E+ Y    K     G  ++G  V +  +  +     +E AY+  
Sbjct: 328 GLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGR-----LEEAYEFI 382

Query: 348 SEIS-EKNVYLWTSVIAAYAMAGH---AQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             +       LW ++++A    G+    ++ I+   E++++        +I L + C+  
Sbjct: 383 VGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGG----DYIILSNLCARA 438

Query: 404 G 404
           G
Sbjct: 439 G 439



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 56/228 (24%)

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           +++ A+ LF +I + ++ L+ ++   YA      +A  LF ++  +G  PD  TF +LL 
Sbjct: 70  SMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLK 129

Query: 399 ACSHGGLVDEGYDF----------------------------LSKKSRVYN--IKPKMQH 428
           AC+    ++EG                               +    RV++   +P +  
Sbjct: 130 ACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVT 189

Query: 429 YGCMVDLLGRAGHLEESANFITSMPI----PPDVSIWSSLLRACRC----------HQNV 474
           Y  M+    R     E+ +    +      P DV++  S+L +C            H+ V
Sbjct: 190 YNAMITGYARGSRPNEALSLFRELQARNLKPTDVTML-SVLSSCALLGALDLGKWMHEYV 248

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI--RMKLRD 520
           K  ++ F    + D         L ++YAK G LDD   +   M +RD
Sbjct: 249 K--KNGFNRFVKVD-------TALIDMYAKCGSLDDAVCVFENMAVRD 287


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 304/545 (55%), Gaps = 69/545 (12%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG L    ++F+K+  R+V+SW +MI+ YT  G     + LL +M  EGV  D V 
Sbjct: 157 MYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVA 216

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S++ A  +   L+ GK++H +++ + M  +  + N L+DMY KCG +           
Sbjct: 217 ITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSM----------- 265

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK---YK 312
                                 + A  +F  MV +++ISW  M+ G L  D+        
Sbjct: 266 ----------------------EGANSVFSTMVVKDIISWNTMV-GELKPDSRTMACILP 302

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYL 357
           +CAS+ AL  G  +H YI +N  S D                + LA  LF  I  K++  
Sbjct: 303 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 362

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           WT +IA Y M G+  +AI  F EM + G +PD+V+FI++L ACSH GL+++G+ F     
Sbjct: 363 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 422

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             +NI+PK++HY CMVDLL R G+L ++  FI ++PI PD +IW +LL  CR + +++LA
Sbjct: 423 NDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELA 482

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E   + + E +P N G +VLLANIYA+A + +++ R+R K+   GL+K  G S IE  G 
Sbjct: 483 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGR 542

Query: 538 VHKFTSG-DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRER 580
           V+ F SG +  +PHS++I  +L ++   ++++G                +E +L  H E+
Sbjct: 543 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEK 602

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFGL++   + TIR+  NLR+CGDCH   K  S+   REIV+RD+ RFH F+ G CS
Sbjct: 603 LAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCS 662

Query: 641 CRDYW 645
           CR +W
Sbjct: 663 CRGFW 667



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 165/355 (46%), Gaps = 52/355 (14%)

Query: 78  QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLL 137
           ++  F    GDL   +++    ++  + +WN ++      G  +E   ++  +V + +  
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE- 59

Query: 138 NKCGKLKE-VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
              GK  E   +LFDKL +RDVISWN+MIS Y S G+   GLG+  +M   G+  D  T+
Sbjct: 60  ---GKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATI 116

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           +S++    K   L +GK +H    +S+ +   +  N L+DMY KCG +  A ++  +  +
Sbjct: 117 ISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEK--M 174

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
            E +VV WT++++GY +    D A  L  +M +  +    + I+ +L+        +CA 
Sbjct: 175 GERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILH--------ACAR 226

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            G+L +G  VH YIK N ++                 N+++  +++  YA  G  + A  
Sbjct: 227 SGSLDNGKDVHDYIKANNMA----------------SNLFVCNALMDMYAKCGSMEGANS 270

Query: 377 LFLEMEETGT----------KPDQVTFIALLSACS-----------HGGLVDEGY 410
           +F  M               KPD  T   +L AC+           HG ++  GY
Sbjct: 271 VFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGY 325



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 144/392 (36%), Gaps = 104/392 (26%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +HS  I ++  R    S  + +     GDL  A ++  +  E  +  W S+I     +G+
Sbjct: 135 VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGW 194

Query: 120 PQ---------EVFAIYLYLVTRTVLLN-------------------------------- 138
                      E   + L +V  T +L+                                
Sbjct: 195 SDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNA 254

Query: 139 ------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
                 KCG ++    +F  +  +D+ISWNTM+                       + PD
Sbjct: 255 LMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG---------------------ELKPD 293

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
             TM  ++ A   L  LE GK +H ++  +       + N LVD+Y KCG +G A+ L  
Sbjct: 294 SRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD 353

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAE 308
              I   D+V WT +++GY      +EA   F+EM    +E + +S+  ++         
Sbjct: 354 M--IPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY-------- 403

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
               +C+  G L  G W   YI KN  +I              E  +  +  ++   +  
Sbjct: 404 ----ACSHSGLLEQG-WRFFYIMKNDFNI--------------EPKLEHYACMVDLLSRT 444

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           G+  KA      +E     PD   + ALL  C
Sbjct: 445 GNLSKAYKF---IETLPIAPDATIWGALLCGC 473


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/621 (33%), Positives = 323/621 (52%), Gaps = 75/621 (12%)

Query: 90  GYAQQIIRQGDEPEIK---IWNSIIENQLINGYPQEVFAIY-----LYLVTRTVLLN--- 138
           GY ++     DE   K    WN ++   + NG  ++   ++       L++   ++    
Sbjct: 75  GYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYV 134

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K  +L +   +FD++P RD +SWNTMIS Y   G   E   L      E    D  T  +
Sbjct: 135 KRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFE----ESPVRDVFTWTA 190

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++S   +   L+  + +   + E    +S    N ++  Y +C ++ +A++L        
Sbjct: 191 MVSGYVQNGMLDEARRVFDGMPEKN-SVS---WNAIIAGYVQCKRMDQARELFEAMPCQN 246

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------------L 303
           V    W T+++GY ++ +  +AR  FD M +R+ ISW  +I+G                +
Sbjct: 247 VSS--WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304

Query: 304 NQDAEFKYKS--------CASIGALYHGIWVHVYIKKNQI---------------SIDNI 340
            +D E   +S        CA I AL  G  VH  + K  +                  NI
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 364

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           + AY +F  I EK V  W ++IA YA  G  ++A+ LF  M++TG  PD VT + +LSAC
Sbjct: 365 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 424

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLVD+G ++    ++ Y I    +HY CM+DLLGRAG L+++ N + +MP  PD + 
Sbjct: 425 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAAT 484

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           W +LL A R H N +L E A K + E +P N G +VLL+N+YA +GR  D+ R+R+++RD
Sbjct: 485 WGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRD 544

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---- 575
            G+KK  GYS +E    +H FT GD  +P  + IY  L E+++ ++++G +  T L    
Sbjct: 545 RGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHD 604

Query: 576 -----------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                       H E+LAVAFG+++      IR++ NLR+C DCH+ MK  S++  R I+
Sbjct: 605 VEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLII 664

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD+ RFH F GGQCSC DYW
Sbjct: 665 LRDSHRFHHFNGGQCSCGDYW 685



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 194/433 (44%), Gaps = 87/433 (20%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LFD++P RDV+SWN M+S Y   G  +E   +  +M  +    + ++   +++A  +   
Sbjct: 52  LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGR 107

Query: 209 LEMGKNLHLFLEESTMK-ISGSLL-------NYLVDM---------------------YF 239
           +E  +   LF  ++  + IS + +       N LVD                      Y 
Sbjct: 108 IEDAR--RLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYA 165

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
           + G++ EAQ+L     +   DV  WT +VSGYV++   DEARR+FD M E+N +SW  +I
Sbjct: 166 QNGELLEAQRLFEESPVR--DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAII 223

Query: 300 SGM-----LNQDAE-FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
           +G      ++Q  E F+   C ++ +     W  +     Q    +I  A + F  + ++
Sbjct: 224 AGYVQCKRMDQARELFEAMPCQNVSS-----WNTMITGYAQNG--DIAQARNFFDRMPQR 276

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------H 402
           +   W ++IA YA +G+ ++A+ LF+EM+  G + ++ TF + LS C+           H
Sbjct: 277 DSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVH 336

Query: 403 GGLVDEGYD--------FLSKKSRVYNI-----------KPKMQHYGCMVDLLGRAGHLE 443
           G +V  G +         L    +  NI           + ++  +  M+    R G  +
Sbjct: 337 GRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGK 396

Query: 444 ESANFITSMP----IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVL 497
           E+     SM     +P DV++   +L AC     V      F  +T+   +  N   +  
Sbjct: 397 EALMLFESMKKTGILPDDVTM-VGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTC 455

Query: 498 LANIYAKAGRLDD 510
           + ++  +AGRLDD
Sbjct: 456 MIDLLGRAGRLDD 468



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 148/359 (41%), Gaps = 70/359 (19%)

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIEN-----------QLINGYPQEVFAIYLYLVTRT 134
            G+L  AQ++  +    ++  W +++             ++ +G P++    +  ++   
Sbjct: 167 NGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGY 226

Query: 135 VLLNKCGKLKEV-----CQ-----------------------LFDKLPNRDVISWNTMIS 166
           V   +  + +E+     CQ                        FD++P RD ISW  +I+
Sbjct: 227 VQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 286

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            Y   G   E L L  +M  +G   +  T  S +S   ++  LE+GK +H  + ++ ++ 
Sbjct: 287 GYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 346

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
              + N L+ MY KCG I +A  +     I+E +VV W T+++GY +     EA  LF+ 
Sbjct: 347 GCYVGNALLVMYCKCGNIDDAYIVF--EGIEEKEVVSWNTMIAGYARHGFGKEALMLFES 404

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346
           M +  ++   + + G+L+        +C+  G +  G                 E  Y +
Sbjct: 405 MKKTGILPDDVTMVGVLS--------ACSHTGLVDKG----------------TEYFYSM 440

Query: 347 FSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-HG 403
             +     N   +T +I     AG    A +L   M+    +PD  T+ ALL A   HG
Sbjct: 441 TQDYGITANSKHYTCMIDLLGRAGRLDDAQNL---MKNMPFEPDAATWGALLGASRIHG 496



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 83/177 (46%), Gaps = 15/177 (8%)

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           N+  A  LF ++ E++V  W ++++ YA  G+ ++A ++F EM       + +++  +L+
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLA 100

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           A    G +++       K+       ++  + CM+    +   L ++      MP   +V
Sbjct: 101 AYVQNGRIEDARRLFESKA-----DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEV 155

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHVLLANIYAKAGRLDDMSRI 514
           S W++++      QN +L E   + L E  P+ D      + + Y + G LD+  R+
Sbjct: 156 S-WNTMISGYA--QNGELLEA--QRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRV 207


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 209/688 (30%), Positives = 338/688 (49%), Gaps = 80/688 (11%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
           ++ +V PV  +   + + C    + +R   IH  LIT +   +    T V         +
Sbjct: 139 RYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQI 198

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYL--------------------- 128
             A ++  +  E ++  WN+II     NG+ ++   + L                     
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAA 258

Query: 129 -----YLVTRTV---------------------LLNKCGKLKEVCQLFDKLPNRDVISWN 162
                 +V +++                     + +KCG ++    +FD +  + V+SWN
Sbjct: 259 ADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWN 318

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
           +M+  Y   G   + + +  KM  EG+ P  VT++  + A   L DLE GK +H F+++ 
Sbjct: 319 SMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQL 378

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            +    S++N L+ MY KC ++  A  +     ++    V W  ++ GY ++    EA  
Sbjct: 379 NLGSDISVMNSLISMYSKCKRVDIASDIFN--NLNGRTHVSWNAMILGYAQNGRVSEALN 436

Query: 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI------- 335
            F EM    +   +  +  ++   AE    S        HG+ +   + KN         
Sbjct: 437 CFSEMKSLGMKPDSFTMVSVIPALAEL---SVTRHAKWIHGLIIRSCLDKNIFVTTALVD 493

Query: 336 ---SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  I +A  LF  IS+++V  W ++I  Y   G  + A+DLF +M++   +P+ +T
Sbjct: 494 MYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDIT 553

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           +++++SACSH GLVDEG        + Y ++P M HYG MVDLLGRAG ++E+ +FI +M
Sbjct: 554 YLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENM 613

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           PI P ++++ ++L AC+ H+N+++ E A K L E +P   G HVLLANIYA   +   ++
Sbjct: 614 PISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVA 673

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--- 569
            +R  +   GLKK  G S++E    VH F SG   +P S+ IY  L E+   ++  G   
Sbjct: 674 EVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVP 733

Query: 570 -----------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
                      +QE  L  H E+LA+AFGL++TS  TTI +  NLR+CGDCH+  K  S 
Sbjct: 734 DTNLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISL 793

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           V  REI++RD  RFH F+ G CSC DYW
Sbjct: 794 VTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 172/413 (41%), Gaps = 61/413 (14%)

Query: 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +L+      L +K G + E  ++F+ + ++    ++TM+  Y         L  L +M  
Sbjct: 81  HLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRY 140

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           + V P       L+       DL+ GK +H  L  ++   +   +  +V+MY KC +I +
Sbjct: 141 DDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDD 200

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A K+  R  + E D+V W T+++G+ ++    +A  L   M +      ++ +  +L   
Sbjct: 201 AYKMFDR--MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVL--- 255

Query: 307 AEFKYKSCASIGALYHGIWVHVY-IKKNQISIDNI--------------ELAYDLFSEIS 351
                 + A +G L  G  +H Y I+     + NI              E A  +F  + 
Sbjct: 256 -----PAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD 310

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +K V  W S++  Y   G  +KAI +F +M E G  P  VT +  L AC+  G ++ G  
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-K 369

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           F+ K                                F+  + +  D+S+ +SL+      
Sbjct: 370 FVHK--------------------------------FVDQLNLGSDISVMNSLISMYSKC 397

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           + V +A   F +L     ++  A +L    YA+ GR+ +      +++ +G+K
Sbjct: 398 KRVDIASDIFNNLNGRTHVSWNAMILG---YAQNGRVSEALNCFSEMKSLGMK 447


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 304/545 (55%), Gaps = 69/545 (12%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG L    ++F+K+  R+V+SW +MI+ YT  G     + LL +M  EGV  D V 
Sbjct: 295 MYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVA 354

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S++ A  +   L+ GK++H +++ + M  +  + N L+DMY KCG +           
Sbjct: 355 ITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSM----------- 403

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK---YK 312
                                 + A  +F  MV +++ISW  M+ G L  D+        
Sbjct: 404 ----------------------EGANSVFSTMVVKDIISWNTMV-GELKPDSRTMACILP 440

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYL 357
           +CAS+ AL  G  +H YI +N  S D                + LA  LF  I  K++  
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           WT +IA Y M G+  +AI  F EM + G +PD+V+FI++L ACSH GL+++G+ F     
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             +NI+PK++HY CMVDLL R G+L ++  FI ++PI PD +IW +LL  CR + +++LA
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELA 620

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E   + + E +P N G +VLLANIYA+A + +++ R+R K+   GL+K  G S IE  G 
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGR 680

Query: 538 VHKFTSG-DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRER 580
           V+ F SG +  +PHS++I  +L ++   ++++G                +E +L  H E+
Sbjct: 681 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEK 740

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFGL++   + TIR+  NLR+CGDCH   K  S+   REIV+RD+ RFH F+ G CS
Sbjct: 741 LAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCS 800

Query: 641 CRDYW 645
           CR +W
Sbjct: 801 CRGFW 805



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 178/380 (46%), Gaps = 52/380 (13%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           S+ + +++HS + + ++  D  +  ++  F    GDL   +++    ++  + +WN ++ 
Sbjct: 114 SLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVS 173

Query: 113 NQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE-VCQLFDKLPNRDVISWNTMISCYTSM 171
                G  +E   ++  +V + +     GK  E   +LFDKL +RDVISWN+MIS Y S 
Sbjct: 174 EYAKIGDFKESICLFKIMVEKGIE----GKRPESASELFDKLCDRDVISWNSMISGYVSN 229

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G+   GLG+  +M   G+  D  T++S++        L +GK +H    +S+ +   +  
Sbjct: 230 GLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFS 289

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L+DMY KCG +  A ++  +  + E +VV WT++++GY +    D A  L  +M +  
Sbjct: 290 NTLLDMYSKCGDLDGALRVFEK--MGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG 347

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS 351
           +    + I+ +L+        +CA  G+L +G  VH YIK N ++               
Sbjct: 348 VKLDVVAITSILH--------ACARSGSLDNGKDVHDYIKANNMA--------------- 384

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT----------KPDQVTFIALLSACS 401
             N+++  +++  YA  G  + A  +F  M               KPD  T   +L AC+
Sbjct: 385 -SNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACA 443

Query: 402 -----------HGGLVDEGY 410
                      HG ++  GY
Sbjct: 444 SLSALERGKEIHGYILRNGY 463



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 144/329 (43%), Gaps = 62/329 (18%)

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  S++     L+ L  GK +H  ++ +++ +  +L   LV  Y  CG + E +++    
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDE--------------------ARRLFDEMVERNLIS 294
           E  + +V LW  +VS Y K  +  E                    A  LFD++ +R++IS
Sbjct: 161 E--KKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVIS 218

Query: 295 WTLMISGMLNQDAEFK----YK-------------------SCASIGALYHGIWVHVYIK 331
           W  MISG ++     +    YK                    CA+ G L  G  VH    
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 332 KN----QISIDNIEL-----------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           K+    +I+  N  L           A  +F ++ E+NV  WTS+IA Y   G +  AI 
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAII 338

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           L  +ME+ G K D V   ++L AC+  G +D G D +    +  N+   +     ++D+ 
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD-VHDYIKANNMASNLFVCNALMDMY 397

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLL 465
            + G + E AN + S  +  D+  W++++
Sbjct: 398 AKCGSM-EGANSVFSTMVVKDIISWNTMV 425


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 197/535 (36%), Positives = 303/535 (56%), Gaps = 50/535 (9%)

Query: 148 QLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTK 205
           ++F K+    +V  WNT+I  Y  +G       L  +M   G V PD  T   LI A T 
Sbjct: 74  KVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTT 133

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
           + D+ +G+ +H  +  S     GSL+   N L+ +Y  CG +  A K+  +  + E D+V
Sbjct: 134 MADVRLGETIHSVVIRSGF---GSLIYVQNSLLHLYANCGDVASAYKVFDK--MPEKDLV 188

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            W ++++G+ ++ + +EA  L+ EM  + +      I  +L+        +CA IGAL  
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLS--------ACAKIGALTL 240

Query: 323 GIWVHVYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  VHVY+ K         + + +D       +E A  LF E+ +KN   WTS+I   A+
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300

Query: 368 AGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
            G  ++AI+LF  ME T G  P ++TF+ +L ACSH G+V EG+++  +    Y I+P++
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI 360

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+GCMVDLL RAG ++++  +I SMP+ P+V IW +LL AC  H +  LAE A   + +
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ 420

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            +P + G +VLL+N+YA   R  D+ +IR ++   G+KK  G+SL+E G  VH+F  GD 
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDK 480

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLIST 590
            +P S+ IY  L E+   L+ +G                 +   + H E++A+AF LIST
Sbjct: 481 SHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIST 540

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            E++ I +V NLR+C DCH  +K+ S+VYNREIV+RD  RFH F+ G CSC+DYW
Sbjct: 541 PERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 139/304 (45%), Gaps = 23/304 (7%)

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +S+ TKLR +      H  +  S  ++   L+ YLV +      +  A K+  + E   +
Sbjct: 27  VSSITKLRQIHAFSIRH-GVSISDAELGKHLIFYLVSLP-SPPPMSYAHKVFSKIE-KPI 83

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEM-----VERNLISWTLMISGMLNQDAEFKYKSC 314
           +V +W TL+ GY +      A  L+ EM     VE +  ++  +I  +    A+ +    
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTM-ADVRLGET 142

Query: 315 ASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
                +  G    +Y++ + + +     ++  AY +F ++ EK++  W SVI  +A  G 
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK----PKM 426
            ++A+ L+ EM   G KPD  T ++LLSAC+  G +      L K+  VY IK      +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALT-----LGKRVHVYMIKVGLTRNL 257

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
                ++DL  R G +EE+      M     VS W+SL+     +   K A   FK++  
Sbjct: 258 HSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS-WTSLIVGLAVNGFGKEAIELFKYMES 316

Query: 487 TDPL 490
           T+ L
Sbjct: 317 TEGL 320



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 50/272 (18%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           E IHS +I +       +   +       GD+  A ++  +  E ++  WNS+I     N
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200

Query: 118 GYPQEVFAIY-----------------------------------LYLV---------TR 133
           G P+E  A+Y                                   +Y++         + 
Sbjct: 201 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 260

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGV 189
            VLL+   +CG+++E   LFD++ +++ +SW ++I      G  +E + L   M   EG+
Sbjct: 261 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 320

Query: 190 SPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
            P E+T V ++ A +    ++ G +      EE  ++        +VD+  + G++ +A 
Sbjct: 321 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 380

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           + +    + + +VV+W TL+       + D A
Sbjct: 381 EYIKSMPM-QPNVVIWRTLLGACTVHGDSDLA 411


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 201/571 (35%), Positives = 302/571 (52%), Gaps = 70/571 (12%)

Query: 141 GKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           G++    +LFD++P   +D + W T++S ++  G+    + L  +M  + V  D+V++V 
Sbjct: 57  GEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVC 116

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L     KL DL   +  H    +  +  S  + N L+DMY KCG + E +++    E++E
Sbjct: 117 LFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIF--EELEE 174

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD---------AEF 309
             VV WT ++   VK    +  R +F EM ERN ++WT+M++G L            AE 
Sbjct: 175 KSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEM 234

Query: 310 KYK---------------SCASIGALYHGIWVHVYIKKNQISID---------------- 338
            ++               +CA  G L  G WVHVY  K ++ +                 
Sbjct: 235 VFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVD 294

Query: 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                 NI+ + ++F  + ++NV  W ++ +  AM G  +  ID+F +M     KPD +T
Sbjct: 295 MYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLT 353

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           F A+LSACSH G+VDEG+       R Y ++PK+ HY CMVDLLGRAG +EE+   +  M
Sbjct: 354 FTAVLSACSHSGIVDEGWRCF-HSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREM 412

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P+PP+  +  SLL +C  H  V++AE   + L +  P N    +L++N+Y   GR D   
Sbjct: 413 PVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIAD 472

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-- 570
            +R  LR  G++K  G S I     VH+F+SGD  +P ++EIYL LNE+   ++  G   
Sbjct: 473 GLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVP 532

Query: 571 --------QETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                    E  L+        H E+LAV FGL+ T   T + +  NLRIC DCHS MK+
Sbjct: 533 DVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKI 592

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S+VY+REI+IRD  RFH+F+GG CSC DYW
Sbjct: 593 VSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 151/374 (40%), Gaps = 60/374 (16%)

Query: 209 LEMGKNLHLFLEESTMKIS--GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           L  GK LH  L  S +K +    L N L   Y   G++  AQKL     + E D V WTT
Sbjct: 22  LRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTT 81

Query: 267 LVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKY----------- 311
           L+S + +      + +LF EM    VE + +S  + + G+  +  +  +           
Sbjct: 82  LLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVS-VVCLFGVCAKLEDLGFAQQGHGVAVKM 140

Query: 312 ------KSCASIGALYHGIWVHVYIKK------------------NQISIDNIELAYDLF 347
                 K C ++  +Y    +   +K+                    +  + +E   ++F
Sbjct: 141 GVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVF 200

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLV 406
            E+ E+N   WT ++A Y  AG  ++ ++L  EM    G   + VT  ++LSAC+  G +
Sbjct: 201 HEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNL 260

Query: 407 DEGYDFLSKKSRVYNIKPKMQH-----------YGCMVDLLGRAGHLEESANFITSMPIP 455
             G     +   VY +K +M                +VD+  + G+++ S N    M   
Sbjct: 261 VVG-----RWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMR-K 314

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
            +V  W++L      H   ++    F  +      +D     + +  + +G +D+  R  
Sbjct: 315 RNVVTWNALFSGLAMHGKGRMVIDMFPQMIREVKPDDLTFTAVLSACSHSGIVDEGWRCF 374

Query: 516 MKLRDMGLKKQLGY 529
             LR  GL+ ++ +
Sbjct: 375 HSLRFYGLEPKVDH 388



 Score = 42.4 bits (98), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +     +F  +  R+V++WN + S     G  R  + +  +M  E V PD++T  +
Sbjct: 298 KCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTA 356

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA +    ++ G      L    ++        +VD+  + G I EA+ L+    +  
Sbjct: 357 VLSACSHSGIVDEGWRCFHSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPP 416

Query: 259 VDVVLWTTL----VSGYVKSNER 277
            +VVL + L    V G V+  ER
Sbjct: 417 NEVVLGSLLGSCSVHGKVEIAER 439


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 295/545 (54%), Gaps = 50/545 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG + E  ++FDK+  +D++SW ++I+ Y    M  E +GLL  M      P+  T
Sbjct: 95  LYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFT 154

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             SL+ A     D  +G  +H    +        + + L+DMY +CGK+  A  +  +  
Sbjct: 155 FASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDK-- 212

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC- 314
           +D  + V W  L+SG+ +  + + A  +F EM +RN    T            F Y S  
Sbjct: 213 LDSKNGVSWNALISGFARKGDGETALMVFAEM-QRNGFEAT-----------HFTYSSIF 260

Query: 315 ---ASIGALYHGIWVHVYIKKNQIS----IDNIEL-----------AYDLFSEISEKNVY 356
              A IGAL  G WVH ++ K++      + N  L           A  +F  +  K++ 
Sbjct: 261 SGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLV 320

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W S++ A+A  G  ++A+  F EM ++G   +Q+TF+ +L+ACSHGGLV EG  +    
Sbjct: 321 TWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDM- 379

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            + YN++P+++HY  +VDLLGRAG L  +  FI  MP+ P  ++W +LL ACR H+N K+
Sbjct: 380 IKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKV 439

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
            + A  H+ + DP + G  VLL NIYA  G  D  +R+R  ++  G+KK+   S +E G 
Sbjct: 440 GQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGN 499

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRER 580
            VH F + D  +P +EEIY M +EI M ++++G                +E +LQ H E+
Sbjct: 500 SVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEK 559

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           +A+AF LI      TIRI+ N+RICGDCHS  K  S+V+ REIV+RD  RFH F  G CS
Sbjct: 560 IALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCS 619

Query: 641 CRDYW 645
           C DYW
Sbjct: 620 CGDYW 624


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 322/564 (57%), Gaps = 34/564 (6%)

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
           +   + GY  ++F     +V    + + CGKL++  ++FD++P RD++SW +MI  Y   
Sbjct: 100 QQAFVFGYQSDIFVSSALIV----MYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLN 155

Query: 172 GMYREGLGLLSKM------GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           G   + + L   +        + +  D + +VS+ISA +++    + +++H F+ +    
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFD 215

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
              S+ N L+D Y K G+ G A       +I + D V + +++S Y +S   +EA  +F 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275

Query: 286 EMVERNLISW-TLMISGML---NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI---- 337
            +V+  ++++  + +S +L   +     +   C     +  G+   V +  + I +    
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             +E A   F  +  KNV  WT++IA Y M GHA KA++LF  M ++G +P+ +TF+++L
Sbjct: 336 GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           +ACSH GL  EG+ + +     + ++P ++HYGCMVDLLGRAG L+++ + I  M + PD
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPD 455

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             IWSSLL ACR H+NV+LAE +   L E D  N G ++LL++IYA AGR  D+ R+RM 
Sbjct: 456 SIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMI 515

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
           +++ GL K  G+SL+E  G VH F  GD  +P  E+IY  L E+   L + G        
Sbjct: 516 MKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSV 575

Query: 571 --------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                   +E +L+ H E+LA+AFG+++T   +T+ +V NLR+C DCH+ +K+ S++ +R
Sbjct: 576 CHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDR 635

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           E V+RD  RFH F+ G CSC DYW
Sbjct: 636 EFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 12/153 (7%)

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + + +V+ W SVIA  A +G + +A+  F  M +    P + +F   + ACS        
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACS------SL 89

Query: 410 YDFLSKK-----SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           +D  S K     + V+  +  +     ++ +    G LE++      +P   D+  W+S+
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRDIVSWTSM 148

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           +R    + N   A   FK L   +  +D A  L
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFL 181


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 226/665 (33%), Positives = 340/665 (51%), Gaps = 90/665 (13%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           IH+ ++ +N + D  ++  +    V  G + YA +I  + DE +   WNS+I     NG 
Sbjct: 134 IHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGL 193

Query: 120 -----------------PQEVFAIYL--------YLV----------------------T 132
                            P EV  I +        YL+                      T
Sbjct: 194 YNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNT 253

Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
              + +KC  +     +FDK+ N+D+ISW T+I+ Y     + E L LL K+  +G+  D
Sbjct: 254 LIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVD 313

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQK 249
            + + S + A + LR L   K +H +    T+K   S L   N ++D+Y  CG I  A +
Sbjct: 314 TMMIGSTLLACSGLRCLSHAKEVHGY----TLKRGLSDLMMQNMIIDVYADCGNINYATR 369

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL---------ISWTLMIS 300
           +     I   DVV WT+++S YV +   +EA  +F  M E ++         I       
Sbjct: 370 MF--ESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASL 427

Query: 301 GMLNQDAE---FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYL 357
             LN+  E   F ++     G +  G  V+  +        ++E AY +F     K++ L
Sbjct: 428 SALNKGKEIHGFIFRK----GFMLEGSTVNSLVDM-YACCGSLENAYKVFICTRSKSLVL 482

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           WT++I AY M G  + A++LF  ME+    PD +TF+ALL ACSH GL++EG   L    
Sbjct: 483 WTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMK 542

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             Y ++P  +HY C+VDLLGRA HLEE+ +F+ SM I P   +W + L ACR H N KL 
Sbjct: 543 CKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLG 602

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E A + L + DP + G++VL++N++A +GR  D+  +RM+++  GLKK  G S IE G  
Sbjct: 603 EIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNK 662

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--LQETSL---------------QHRER 580
           VH F   D  +P S +IY  L +I   L+++G  + +T L                H ER
Sbjct: 663 VHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSER 722

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+A+GL+STSE T IRI  NLR+C DCH+F K+ S+ + RE+++RD  RFH F+ G CS
Sbjct: 723 LAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCS 782

Query: 641 CRDYW 645
           C D+W
Sbjct: 783 CGDFW 787



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 163/359 (45%), Gaps = 44/359 (12%)

Query: 139 KCGKLKEVCQLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           KC  +    +LFD++  R DV+SWN++IS Y+  G   E LGL  +M   GV  +  T+V
Sbjct: 57  KCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLV 116

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           + + A       ++G  +H  + +S   +   + N LV M+ + GK+  A ++    E+D
Sbjct: 117 AALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFD--ELD 174

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           E D + W ++++G+ ++   +EA + F  + + NL    + +  +L       Y      
Sbjct: 175 EKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGY------ 228

Query: 318 GALYHGIWVHVYIKKN----QISIDN-----------IELAYDLFSEISEKNVYLWTSVI 362
             L +G  +H Y  KN     + I N           +  A  +F ++  K++  WT+VI
Sbjct: 229 --LLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVI 286

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           AAYA      +A+ L  +++  G   D +   + L ACS       G   LS    V+  
Sbjct: 287 AAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS-------GLRCLSHAKEVHGY 339

Query: 423 KPK-------MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
             K       MQ+   ++D+    G++  +     S+    DV  W+S++ +C  H  +
Sbjct: 340 TLKRGLSDLMMQNM--IIDVYADCGNINYATRMFESIKC-KDVVSWTSMI-SCYVHNGL 394



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 125/295 (42%), Gaps = 26/295 (8%)

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV  D  T   ++ A   + D+  G  +H  + +        + N LV MY KC  I  A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL--ISWTLMISGMLNQ 305
           +KL  R   +  DVV W +++S Y  + +  EA  LF EM +  +   ++TL+ +    +
Sbjct: 65  RKLFDRMN-ERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACE 123

Query: 306 DAEFKYKSCASIGALYHG-----IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTS 360
           D+ FK        A+        ++V   +    +    +  A  +F E+ EK+   W S
Sbjct: 124 DSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNS 183

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--------YDF 412
           +IA +   G   +A+  F  +++   KPD+V+ I++L+A    G +  G         ++
Sbjct: 184 MIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW 243

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           L    R+ N    M    C V   G           +    I  D+  W++++ A
Sbjct: 244 LDSNLRIGNTLIDMYSKCCCVAYAG----------LVFDKMINKDLISWTTVIAA 288


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 323/564 (57%), Gaps = 34/564 (6%)

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
           +   + GY  ++F     +V    + + CGKL++  ++FD++P R+++SW +MI  Y   
Sbjct: 100 QQAFVFGYQSDIFVSSALIV----MYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155

Query: 172 GMYREGLGLLSKMGAE------GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           G   + + L   +  E       +  D + MVS+ISA +++    + +++H F+ +    
Sbjct: 156 GNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFD 215

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
              S+ N L+D Y K G+ G A       +I + D V + +++S Y +S   +EA  +F 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFR 275

Query: 286 EMVERNLISWT-LMISGML---NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI---- 337
            +++  ++++  + +S +L   +     +   C     +  G+   V +  + I +    
Sbjct: 276 RLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             +E A   F  +  KNV  WT++IA Y M GHA KA++LF  M ++G +P+ +TF+++L
Sbjct: 336 GRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           +ACSH GL D G+ + +     + ++P ++HYGCMVDLLGRAG L+++ + I  M + PD
Sbjct: 396 AACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPD 455

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             IWSSLL ACR H+NV+LAE +   L E DP N G ++LL++IYA +GR  D+ R+RM 
Sbjct: 456 SIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMT 515

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
           +++ GL K  G+SL+E  G VH F  GD  +P  E+IY  L E+   L + G        
Sbjct: 516 MKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSV 575

Query: 571 --------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                   +E +L+ H E+LA+AFG+++T   +T+ +V NLR+C DCH+ +K+ S++ +R
Sbjct: 576 CHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDR 635

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           E V+RD  RFH F+ G CSC DYW
Sbjct: 636 EFVVRDAKRFHHFKDGFCSCGDYW 659



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 8/186 (4%)

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + + +V+ W SVIA  A +G + +A+  F  M +    P + +F   + ACS    +  G
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSG 95

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
                +++ V+  +  +     ++ +    G LE++      +P    VS W+S++R   
Sbjct: 96  KQ-THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS-WTSMIRGYD 153

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            + N   A   FK L   +  ND    +  +       +   SR+  K    GL + +  
Sbjct: 154 LNGNALDAVSLFKDLLIEE--NDDDATMFLDSMGMVSVISACSRVAAK----GLTESIHS 207

Query: 530 SLIEQG 535
            +I++G
Sbjct: 208 FVIKRG 213


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 303/557 (54%), Gaps = 57/557 (10%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L     L+N   K G L++  + F ++   DV+SWN++I+ Y          G   KM  
Sbjct: 351 LFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQL 410

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIG 245
            G  PD +T+VSL S   + RD +  +++H F+      +   ++ N +VDMY K G + 
Sbjct: 411 NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLD 470

Query: 246 EAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVE-----RNLISWTLMI 299
            A K+   +EI  V DV+ W TL++GY ++    EA  ++  M E      N  +W  ++
Sbjct: 471 SAHKV---FEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSIL 527

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAY 344
                          A +GAL  G+ +H  + K  + +D                +  A 
Sbjct: 528 PAY------------AHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAM 575

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF ++ +++   W ++I+ + + GHA+K + LF EM + G KPD VTF++LLSACSH G
Sbjct: 576 SLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
            V+EG  +  +  + Y IKP ++HYGCMVDLLGRAG+LE +  FI  MP+ PD SIW +L
Sbjct: 636 FVEEG-KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGAL 694

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           L ACR H N++L + A   L E D  N G +VLL+NIYA  G+ + + ++R   R+ GLK
Sbjct: 695 LGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK 754

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETS-- 574
           K  G+S IE    V  F +G+  +P  +EIY  L  +   ++  G        LQ+    
Sbjct: 755 KTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEED 814

Query: 575 ------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDN 628
                   H ERLA+AFG+IST  K+ IRI  NLR+CGDCH+  K  S++  REIV+RD+
Sbjct: 815 EKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDS 874

Query: 629 GRFHRFQGGQCSCRDYW 645
            RFH F+ G CSC DYW
Sbjct: 875 NRFHHFKDGICSCGDYW 891



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 213/482 (44%), Gaps = 63/482 (13%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+ L+    ++   IST++       GD+  ++    Q  + ++  WNS+I   + NG+
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 120 PQEVFAIYLYLV----------TRTVLLNKCGKLKE------------------------ 145
             E    +  L+          T   +L  CG L +                        
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLI 257

Query: 146 -----------VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
                         LFD +P RD+ SWN MIS     G   + L +L +M  EG+  + V
Sbjct: 258 HMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFV 317

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T+VS++    +L D+     +HL++ +  ++    + N L++MY K G + +A+K   + 
Sbjct: 318 TVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM 377

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFK 310
            I   DVV W ++++ Y ++++   A   F +M     + +L++  + ++ ++ Q  + K
Sbjct: 378 FI--TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLT-LVSLASIVAQSRDCK 434

Query: 311 YKSCASIGALYHGIWVHVYIKKNQI-----SIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
                    +  G  +   +  N +      +  ++ A+ +F  I  K+V  W ++I  Y
Sbjct: 435 NSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGY 494

Query: 366 AMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           A  G A +AI+++  MEE     P+Q T++++L A +H G + +G     +  +  N+  
Sbjct: 495 AQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT-NLHL 553

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            +    C++D+ G+ G L ++ +    +P    V+ W++++    CH     AE   K  
Sbjct: 554 DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT-WNAII---SCHGIHGHAEKTLKLF 609

Query: 485 TE 486
            E
Sbjct: 610 GE 611



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 189/438 (43%), Gaps = 68/438 (15%)

Query: 115 LINGYPQEVFA----IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS 170
           ++ G  Q +F     + LY     V L++C         FD++P +DV +WN+MIS Y  
Sbjct: 143 VVAGKVQSIFISTRLVNLYANLGDVSLSRC--------TFDQIPQKDVYTWNSMISAYVH 194

Query: 171 MGMYREGLGLLSK-MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
            G + E +G   + +    + PD  T   ++ A   L D   G+ +H +  +   + +  
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVF 251

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-V 288
           +   L+ MY + G  G A+ L    ++   D+  W  ++SG +++    +A  + DEM +
Sbjct: 252 VAASLIHMYSRFGFTGIARSLFD--DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------- 338
           E   +++  ++S +           C  +G +   + +H+Y+ K+ +  D          
Sbjct: 310 EGIKMNFVTVVSIL---------PVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINM 360

Query: 339 -----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                N+E A   F ++   +V  W S+IAAY        A   F++M+  G +PD +T 
Sbjct: 361 YAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTL 420

Query: 394 IALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
           ++L S  +           HG ++  G+  L +   + N          +VD+  + G L
Sbjct: 421 VSLASIVAQSRDCKNSRSVHGFIMRRGW--LMEDVVIGN---------AVVDMYAKLG-L 468

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLAN 500
            +SA+ +  + +  DV  W++L+     +     A   +K + E   +  N G  V +  
Sbjct: 469 LDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528

Query: 501 IYAKAGRLDDMSRIRMKL 518
            YA  G L    RI  ++
Sbjct: 529 AYAHVGALQQGMRIHGRV 546


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 203/628 (32%), Positives = 324/628 (51%), Gaps = 69/628 (10%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ----QIIRQGDEPEIKIWN 108
           + D+  RI   L+      +      + +     GDL   +    Q+I+ G  P+  +WN
Sbjct: 171 TCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWN 230

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
           S     L+N Y                   KCG     C++F ++P RDV+SW  +I+ +
Sbjct: 231 S-----LVNVYA------------------KCGSANYACKVFGEIPERDVVSWTALITGF 267

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
            + G Y  GL + ++M AEG +P+  T +S++ + + L D+++GK +H  + ++++  + 
Sbjct: 268 VAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGND 326

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            +   LVDMY K   + +A+ +  R  + + D+  WT +V+GY +  + ++A + F +M 
Sbjct: 327 FVGTALVDMYAKNRFLEDAETIFNR--LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 384

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH-VYIKKNQ------------- 334
              +      ++  L+         C+ I  L  G  +H + IK  Q             
Sbjct: 385 REGVKPNEFTLASSLS--------GCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDM 436

Query: 335 -ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                 +E A  +F  +  ++   W ++I  Y+  G   KA+  F  M + GT PD+VTF
Sbjct: 437 YAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTF 496

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           I +LSACSH GL++EG    +  S++Y I P ++HY CMVD+LGRAG   E  +FI  M 
Sbjct: 497 IGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 556

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           +  +V IW ++L AC+ H N++  E A   L E +P  D  ++LL+N++A  G  DD++ 
Sbjct: 557 LTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTN 616

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--- 570
           +R  +   G+KK+ G S +E  G VH F S D  +P   EI+L L ++   L   G    
Sbjct: 617 VRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPN 676

Query: 571 -------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
                        QE    H ERLA+AF L+STS + TIRI  NLRICGDCH FMK  S+
Sbjct: 677 TDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISE 736

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + N+E+V+RD   FH F+ G CSC+++W
Sbjct: 737 ITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 162/360 (45%), Gaps = 28/360 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           Q F  +   ++ S N ++S +       +G  +L ++  EG  P+  T +S++       
Sbjct: 146 QFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKG 205

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           DL  GK +H  + +S +     L N LV++Y KCG    A K+ G  EI E DVV WT L
Sbjct: 206 DLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG--EIPERDVVSWTAL 263

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++G+V         R+F++M+             +L        +SC+S+  +  G  VH
Sbjct: 264 ITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISIL--------RSCSSLSDVDLGKQVH 314

Query: 328 VYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
             I KN +  ++               +E A  +F+ + +++++ WT ++A YA  G  +
Sbjct: 315 AQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGE 374

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           KA+  F++M+  G KP++ T  + LS CS    +D G    S   +       M     +
Sbjct: 375 KAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQ-SGDMFVASAL 433

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VD+  + G +E+ A  +    +  D   W++++     H     A  AF+ + +   + D
Sbjct: 434 VDMYAKCGCVED-AEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPD 492



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 143/335 (42%), Gaps = 57/335 (17%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           ++I+ G  P+  +W+S++              +Y+          KC  L+   Q+ +++
Sbjct: 14  RVIKNGICPDSHLWSSLVN-------------VYV----------KCESLQCARQVLEEM 50

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P +DV  WN  +S   S    +E + L   M    +  ++    SLISA   L D   G+
Sbjct: 51  PIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGE 110

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
           ++H  + +   +    + N  V MY K   +    +      I+  ++     L+SG+  
Sbjct: 111 SIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIE--NLASRNNLLSGFCD 168

Query: 274 SNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY 329
           +   D+  R+  +++    E N+ ++  ++            K+CAS G L  G  +H  
Sbjct: 169 TETCDQGPRILIQLLVEGFEPNMYTFISIL------------KTCASKGDLNEGKAIHGQ 216

Query: 330 IKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           + K+ I+ D               +   A  +F EI E++V  WT++I  +   G+    
Sbjct: 217 VIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SG 275

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + +F +M   G  P+  TFI++L +CS    VD G
Sbjct: 276 LRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 310


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/548 (35%), Positives = 307/548 (56%), Gaps = 61/548 (11%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L + G L E  +L  + P R+V+SW ++I+ Y+  G   + +   + M ++GV PDEV +
Sbjct: 179 LVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAV 238

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL---LGR 253
           +  +SA +KL++LE G+ LHL + +  ++++  L+  L+DMY KCG I +AQ +   +GR
Sbjct: 239 IGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGR 298

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDA-- 307
            +  E     W  ++ GY K    D AR LFD+M  R++I++  MI+G ++    +DA  
Sbjct: 299 GQKPEP----WNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQ 354

Query: 308 -------------EFKYKS----CASIGALYHGIWVHVYIKKNQISID------------ 338
                         F   S    CAS+GAL  G  +H  I++  +  D            
Sbjct: 355 LFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYM 414

Query: 339 ---NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
               ++ A  +F  + E++V+ W+++IA  A  G    A++ F +M+  G +P  VT+IA
Sbjct: 415 KCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIA 474

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           +L+ACSH  L++EG    ++   ++ + P+++HYGCM+DLL R+G L+E+ + + +MP+ 
Sbjct: 475 VLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQ 534

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
           P+  IW+S+L ACR H+N+ LA HA +HL +  P  D  +V L NIY  + +  +  RIR
Sbjct: 535 PNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIR 594

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS- 574
           M + + G+KK  GYS I   G VHKF   D  +P + EI  M+ EI   L+  G    + 
Sbjct: 595 MLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGYSPATS 654

Query: 575 ---------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVY 619
                          L H E++A+AFGLIS      I I+ NLR+C DCHS +K+ SQ++
Sbjct: 655 RIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIMKNLRVCEDCHSAIKLISQLW 714

Query: 620 NREIVIRD 627
           NREI++RD
Sbjct: 715 NREIIVRD 722



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 76/305 (24%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L+ MY   G   +A++     E+   D V+W T++ G V+    DEARRL  +  ERN
Sbjct: 142 NPLIHMYASLGLTDDARRAFD--EVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERN 199

Query: 292 LISWTLMISG----------------MLNQDAE-------FKYKSCASIGALYHGIWVHV 328
           ++SWT +I+G                ML+   E           +C+ +  L  G  +H+
Sbjct: 200 VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHL 259

Query: 329 YIKKNQISIDN-----------------------------------------------IE 341
            + K +I + +                                               ++
Sbjct: 260 LVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVD 319

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           +A  LF ++  ++V  + S+I  Y  +G  + A+ LF+++   G + D  T ++LL+AC+
Sbjct: 320 IARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACA 379

Query: 402 HGGLVDEGYDF-LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
             G + +G     S + R+  ++  +     +VD+  + G ++E+      M    DV  
Sbjct: 380 SLGALPQGRALHASIEQRI--VEEDVYLVTALVDMYMKCGRVDEATAVFHRMG-ERDVHT 436

Query: 461 WSSLL 465
           WS+++
Sbjct: 437 WSAMI 441


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 296/559 (52%), Gaps = 68/559 (12%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LF +L   +  +W  +I  Y   G   + L   S M    VSP   T  +L SA   +R 
Sbjct: 65  LFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRH 124

Query: 209 LEMGKNLHLFLEESTMKISG-----SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
             +G  LH      T+ + G      + N ++DMY KCG +  A+ +    E+ E DV+ 
Sbjct: 125 SALGAQLH----AQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFD--EMPERDVIS 178

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----MLNQDAEFKYK------- 312
           WT L+  Y +  +   AR LFD +  +++++WT M++G     +  DA   ++       
Sbjct: 179 WTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGV 238

Query: 313 ------------SCASIGALYHGIWVHVYIKKNQISID-----------------NIELA 343
                       +CA +GA  +  W+    + +   +                  N+E A
Sbjct: 239 EIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEA 298

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
           YD+F  + E+NV+ ++S+I  +A+ G A+ AI LF +M ETG KP+ VTF+ +L+ACSH 
Sbjct: 299 YDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHA 358

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GLVD+G    +   + Y + P  + Y CM DLL RAG+LE++   + +MP+  D ++W +
Sbjct: 359 GLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGA 418

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL A   H N  +AE A K L E +P N G ++LL+N YA AGR DD+S++R  LR+  L
Sbjct: 419 LLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNL 478

Query: 524 KKQLGYSLIE-QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQET--------- 573
           KK  G+S +E + G +HKF +GD+ +P   EI   LN++   L+  G Q           
Sbjct: 479 KKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGIN 538

Query: 574 -------SLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                   + H E+LA+AFGL+ST   +TI+I+ NLRIC DCH  M   S+V  R+IV+R
Sbjct: 539 DREKRLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVR 598

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           DN RFH F  G CSC ++W
Sbjct: 599 DNTRFHHFLNGACSCSNFW 617


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 210/632 (33%), Positives = 324/632 (51%), Gaps = 82/632 (12%)

Query: 71  RDPQIS----TQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAI 126
           RDP  S    T +   L   G +  A+ +  Q  EP +  WN+     LI GY Q     
Sbjct: 316 RDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNA-----LITGYMQN---- 366

Query: 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                         G + E  +LFDK+P R+ ISW  MI+ Y   G   E LGLL ++  
Sbjct: 367 --------------GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G+ P   ++ S+  A + +  LE G  +H    +   + +    N L+ MY KC  +  
Sbjct: 413 SGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEY 472

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML--- 303
           A+++  R      D+V W + ++  V+++  DEAR  FD M+ R+ +SWT +IS      
Sbjct: 473 ARQVFSRMVTK--DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAE 530

Query: 304 -NQDAEFKYKS-------------------CASIGALYHGIWVH-VYIK---KNQISIDN 339
            + +A   +K+                   C S+GA   G  +H V IK    +++ + N
Sbjct: 531 QSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVAN 590

Query: 340 IELAY----------DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
             ++            +F  + E++++ W ++I  YA  G  ++AI ++  ME  G  P+
Sbjct: 591 ALISMYFKCGCADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPN 650

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
           +VTF+ LL+ACSH GLVDEG+ F    S+ Y + P  +HY CMVDLLGR G ++ +  FI
Sbjct: 651 EVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFI 710

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             MPI PD  IWS+LL AC+ H+N ++ + A + L   +P N G +V+L+NIY+  G   
Sbjct: 711 YDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWG 770

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           +++ +R  ++  G+ K+ G S  +    +H F +GD  +   EEI   L E+   L+  G
Sbjct: 771 EVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATG 830

Query: 570 L---------------QETS-LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
                           +E+S L H E+LAVA+ L++T +   I+I+ NLRICGDCH+F+K
Sbjct: 831 YVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIK 890

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             S V  R+I IRD  RFH F+ G CSC D+W
Sbjct: 891 FVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 156/369 (42%), Gaps = 61/369 (16%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L + G++ E  ++FD +P RD+I+WN+MIS Y   GM      L   +    +    +  
Sbjct: 44  LGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI-- 101

Query: 197 VSLISARTKL-RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             L+S   +L R LE  +     LE +T+       N ++  Y + G I  A++L     
Sbjct: 102 --LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARRLFD--A 152

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS--------------- 300
           +   DV  W ++++GY  S +  +AR LF++M ERNL+SWT+MIS               
Sbjct: 153 MPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIF 212

Query: 301 ------GMLNQDAEFKYKSCASIG-------------ALYHGIWVHVYIKK---NQISID 338
                 G+L   + F     A  G             AL  G    V I     N  S D
Sbjct: 213 CKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRD 272

Query: 339 N--IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
              ++ A   F  + E+N Y W+++IAA +  G    AI ++ E +   +   +   I  
Sbjct: 273 TSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY-ERDPVKSIACRTALITG 331

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L+ C   G +D+      +       +P +  +  ++    + G + E+      MP   
Sbjct: 332 LAQC---GRIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRN 383

Query: 457 DVSIWSSLL 465
            +S W+ ++
Sbjct: 384 TIS-WAGMI 391



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 95/439 (21%), Positives = 183/439 (41%), Gaps = 79/439 (17%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV------LLNKCGKLK--EVCQLFDKLPNRDV 158
           WN++I   + NG       ++  + +R V      L   C  L+  +   LF+K+P R++
Sbjct: 130 WNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNL 189

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           +SW  MIS Y  +  + +   +  KM  EG+ PD+    S +SA   L +L++ ++L + 
Sbjct: 190 VSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVL 249

Query: 219 LEESTMK----ISGSLLN-YLVD------------------------MYFKCGKIGEAQK 249
             ++  +    I  ++LN Y  D                        M       G    
Sbjct: 250 ALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDA 309

Query: 250 LLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
            +  YE D V  +   T L++G  +    D+AR LF+++ E  ++SW  +I+G       
Sbjct: 310 AIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG------- 362

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
                               Y++   ++      A +LF ++  +N   W  +IA YA  
Sbjct: 363 --------------------YMQNGMVN-----EAKELFDKMPFRNTISWAGMIAGYAQN 397

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G +++A+ L  E+  +G  P   +  ++  ACS+   ++ G    S   +V     +   
Sbjct: 398 GRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV---GCQFNS 454

Query: 429 YGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           + C  ++ + G+  ++E +    + M +  D+  W+S L A   +  +  A + F ++  
Sbjct: 455 FACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAALVQNDLLDEARNTFDNMLS 513

Query: 487 TDPLNDGAHVLLANIYAKA 505
            D   D +   + + YA A
Sbjct: 514 RD---DVSWTTIISAYAHA 529


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 210/632 (33%), Positives = 324/632 (51%), Gaps = 82/632 (12%)

Query: 71  RDPQIS----TQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAI 126
           RDP  S    T +   L   G +  A+ +  Q  EP +  WN+     LI GY Q     
Sbjct: 316 RDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNA-----LITGYMQN---- 366

Query: 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                         G + E  +LFDK+P R+ ISW  MI+ Y   G   E LGLL ++  
Sbjct: 367 --------------GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G+ P   ++ S+  A + +  LE G  +H    +   + +    N L+ MY KC  +  
Sbjct: 413 SGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEY 472

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML--- 303
           A+++  R      D+V W + ++  V+++  DEAR  FD M+ R+ +SWT +IS      
Sbjct: 473 ARQVFSRMVTK--DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAE 530

Query: 304 -NQDAEFKYKS-------------------CASIGALYHGIWVH-VYIK---KNQISIDN 339
            + +A   +K+                   C S+GA   G  +H V IK    +++ + N
Sbjct: 531 QSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVAN 590

Query: 340 IELAY----------DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
             ++            +F  + E++++ W ++I  YA  G  ++AI ++  ME  G  P+
Sbjct: 591 ALISMYFKCGCADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPN 650

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
           +VTF+ LL+ACSH GLVDEG+ F    S+ Y + P  +HY CMVDLLGR G ++ +  FI
Sbjct: 651 EVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFI 710

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             MPI PD  IWS+LL AC+ H+N ++ + A + L   +P N G +V+L+NIY+  G   
Sbjct: 711 YDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWG 770

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           +++ +R  ++  G+ K+ G S  +    +H F +GD  +   EEI   L E+   L+  G
Sbjct: 771 EVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATG 830

Query: 570 L---------------QETS-LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
                           +E+S L H E+LAVA+ L++T +   I+I+ NLRICGDCH+F+K
Sbjct: 831 YVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIK 890

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             S V  R+I IRD  RFH F+ G CSC D+W
Sbjct: 891 FVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 156/369 (42%), Gaps = 61/369 (16%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L + G++ E  ++FD +P RD+I+WN+MIS Y   GM      L   +    +    +  
Sbjct: 44  LGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAI-- 101

Query: 197 VSLISARTKL-RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             L+S   +L R LE  +     LE +T+       N ++  Y + G I  A++L     
Sbjct: 102 --LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARRLFD--A 152

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS--------------- 300
           +   DV  W ++++GY  S +  +AR LF++M ERNL+SWT+MIS               
Sbjct: 153 MPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIF 212

Query: 301 ------GMLNQDAEFKYKSCASIG-------------ALYHGIWVHVYIKK---NQISID 338
                 G+L   + F     A  G             AL  G    V I     N  S D
Sbjct: 213 CKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRD 272

Query: 339 N--IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
              ++ A   F  + E+N Y W+++IAA +  G    AI ++ E +   +   +   I  
Sbjct: 273 TSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY-ERDPVKSIACRTALITG 331

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L+ C   G +D+      +       +P +  +  ++    + G + E+      MP   
Sbjct: 332 LAQC---GRIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRN 383

Query: 457 DVSIWSSLL 465
            +S W+ ++
Sbjct: 384 TIS-WAGMI 391



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 95/439 (21%), Positives = 183/439 (41%), Gaps = 79/439 (17%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV------LLNKCGKLK--EVCQLFDKLPNRDV 158
           WN++I   + NG       ++  + +R V      L   C  L+  +   LF+K+P R++
Sbjct: 130 WNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNL 189

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           +SW  MIS Y  +  + +   +  KM  EG+ PD+    S +SA   L +L++ ++L + 
Sbjct: 190 VSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVL 249

Query: 219 LEESTMK----ISGSLLN-YLVD------------------------MYFKCGKIGEAQK 249
             ++  +    I  ++LN Y  D                        M       G    
Sbjct: 250 ALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDA 309

Query: 250 LLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
            +  YE D V  +   T L++G  +    D+AR LF+++ E  ++SW  +I+G       
Sbjct: 310 AIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG------- 362

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
                               Y++   ++      A +LF ++  +N   W  +IA YA  
Sbjct: 363 --------------------YMQNGMVN-----EAKELFDKMPFRNTISWAGMIAGYAQN 397

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G +++A+ L  E+  +G  P   +  ++  ACS+   ++ G    S   +V     +   
Sbjct: 398 GRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV---GCQFNS 454

Query: 429 YGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           + C  ++ + G+  ++E +    + M +  D+  W+S L A   +  +  A + F ++  
Sbjct: 455 FACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAALVQNDLLDEARNTFDNMLS 513

Query: 487 TDPLNDGAHVLLANIYAKA 505
            D   D +   + + YA A
Sbjct: 514 RD---DVSWTTIISAYAHA 529


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 216/681 (31%), Positives = 342/681 (50%), Gaps = 77/681 (11%)

Query: 39  PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + V  +  +C+S+ + ++   +HS+L+   +  D      + +  V  GD+  A  I
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 96  IRQGDEPEIKIWNSII-----------------ENQLINGYPQE-VFAIYLYLVTRT--- 134
              GD   + +WN ++                 + Q    +P +  +   L   T T   
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQI 362

Query: 135 -----------------------VLLNKCGK---LKEVCQLFDKLPNRDVISWNTMISCY 168
                                  VL++   K   L +  ++ + L  RDV+SW +MI+ Y
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
                  E L    +M   GV PD + + S  SA   ++ +  G  +H  +  S      
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM- 287
           S+ N LV++Y +CG+  EA  L    EID  D + W  L+SG+ +S   ++A  +F +M 
Sbjct: 483 SIWNTLVNLYARCGRSEEAFSLF--REIDHKDEITWNGLISGFGQSRLYEQALMVFMKMS 540

Query: 288 ---VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNI 340
               + N+ ++   IS + N  A+ K        A+  G      +    IS+     +I
Sbjct: 541 QAGAKYNVFTFISAISALANL-ADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSI 599

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           E A  +FSE+S +N   W ++I + +  G   +A+DLF +M++ G KP+ VTFI +L+AC
Sbjct: 600 EDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAAC 659

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLV+EG  +    S VY + P   HY C+VD+LGRAG L+ +  F+  MPI  +  I
Sbjct: 660 SHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMI 719

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           W +LL AC+ H+N+++ E A KHL E +P +  ++VLL+N YA  G+  +  ++R  ++D
Sbjct: 720 WRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKD 779

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE-------- 572
            G++K+ G S IE    VH F  GD  +P S++IY  L+E+   L + G ++        
Sbjct: 780 RGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHE 839

Query: 573 --------TSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                   T+  H E+LAVAFGL++      +R++ NLR+C DCHS+MK TS+V  REIV
Sbjct: 840 KEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIV 899

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD  RFH F  G CSC DYW
Sbjct: 900 LRDVYRFHHFNSGSCSCGDYW 920



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 169/372 (45%), Gaps = 27/372 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G + +  Q+F +L +RD +SW  M+S Y   G+ +E   L S+M    V P    
Sbjct: 87  LYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYV 146

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S++SA TK +    G+ +H  + +        + N L+ +Y   G    A+++    +
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVF--CD 204

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D V + TL+SG+ +    + A ++FDEM    L    + ++ +L         +CA
Sbjct: 205 MLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL--------AACA 256

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           S+G L  G  +H Y+ K  +S D               +IE A+D+F+     NV LW  
Sbjct: 257 SVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNL 316

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ AY       K+ ++F +M+ TG  P++ T+  +L  C+  G ++ G    S   +  
Sbjct: 317 MLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIK-N 375

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
             +  M   G ++D+  +   L++ A  I  M    DV  W+S++     H   + A   
Sbjct: 376 GFESDMYVSGVLIDMYSKYRCLDK-ARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALAT 434

Query: 481 FKHLTETDPLND 492
           FK + +     D
Sbjct: 435 FKEMQDCGVWPD 446



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 154/348 (44%), Gaps = 43/348 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G  K   ++F  +   D +++NT+IS +   G     L +  +M   G+ PD VT+ SL+
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL--LGRYEIDE 258
           +A   + DL+ GK LH +L ++ M         L+D+Y KCG I  A  +  LG    D 
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG----DR 308

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSC 314
            +VVLW  ++  Y + ++  ++  +F +M    +               +F Y    ++C
Sbjct: 309 TNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI------------HPNKFTYPCILRTC 356

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
              G +  G  +H    KN    D                ++ A  +   + +++V  WT
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWT 416

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           S+IA Y      ++A+  F EM++ G  PD +   +  SAC+    + +G   L   +RV
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQG---LQIHARV 473

Query: 420 Y--NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           Y       +  +  +V+L  R G  EE+ +    +    +++ W+ L+
Sbjct: 474 YVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEIT-WNGLI 520


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 210/613 (34%), Positives = 316/613 (51%), Gaps = 92/613 (15%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKIWN 108
           C SI + ++I S ++ T L+ D   S+++  F   +   DL Y   I+     P    WN
Sbjct: 16  CKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWN 75

Query: 109 SIIENQLINGYPQEVFAIY---------------------------------------LY 129
             I   L +  P+E   +Y                                       L+
Sbjct: 76  VAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLH 135

Query: 130 L-------VTRTV--LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           L       V+  V  LL  CG L    ++FDK   RD++SWN+MI+ Y   G   E L  
Sbjct: 136 LGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNF 195

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             +M  EG+ PDEVTM+ ++S+  +L DL++G+  H ++EE+ +K++  L N L+DMY K
Sbjct: 196 YREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMK 255

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG +  A+KL     +    +V WTT+V GY +S   D A +LFDEM +++++ W  MI 
Sbjct: 256 CGNLESARKLFD--SMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIG 313

Query: 301 GMLNQD------AEFK-----------------YKSCASIGALYHGIWVHVYIKKNQISI 337
           G ++ +      A F                    +C+ +GAL  GIW+H YI+K+++S+
Sbjct: 314 GYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSL 373

Query: 338 D---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
           +                I  A  +F E+  +N   WT++I+  A+ G+A  AI  F EM 
Sbjct: 374 NVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMI 433

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
           +    PD+VTF+ LLSAC HGGLV+EG  + S+ S  +N+ PK++HY CMVDLLGRAG L
Sbjct: 434 DNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLL 493

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           EE+   I SMPI  D  +W +L  ACR H NV + E A   L + DP + G +VLLAN+Y
Sbjct: 494 EEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMY 553

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE 562
            +A    +  + R  +R  G++K  G S IE  G V++F   D  +P SE+IY  L  I+
Sbjct: 554 GEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECL--IQ 611

Query: 563 MTLQQQGLQETSL 575
           +T Q + ++ T +
Sbjct: 612 LTRQLELVECTPV 624


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 217/681 (31%), Positives = 342/681 (50%), Gaps = 77/681 (11%)

Query: 39  PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + V  +  +C+S+ + ++   +HS+L+   +  D      + +  V  GD+  A  I
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 96  IRQGDEPEIKIWNSII-----------------ENQLINGYP-QEVFAIYLYLVTRT--- 134
              GD   + +WN ++                 + Q    +P Q  +   L   T T   
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQI 362

Query: 135 -----------------------VLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
                                  VL++   K G L +  ++ + L  RDV+SW +MI+ Y
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
                  E L    +M   GV PD + + S  SA   ++ +  G  +H  +  S      
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM- 287
           S+ N LV++Y +CG+  EA  L    EI+  D + W  L+SG+ +S    +A  +F +M 
Sbjct: 483 SIWNTLVNLYARCGRSEEAFSLF--REIEHKDEITWNGLISGFGQSRLYKQALMVFMKMG 540

Query: 288 ---VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNI 340
               + N+ ++   IS + N  A+ K        A+  G      +    IS+     +I
Sbjct: 541 QAGAKYNVFTFISAISALANL-ADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSI 599

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           E A  +FSE+S +N   W ++I + +  G   +A+DLF +M++ G KP+ VTFI +L+AC
Sbjct: 600 EDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAAC 659

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLV+EG  +    S VY + P   HY C+VD+LGRAG L+ +  F+  MPI  +  I
Sbjct: 660 SHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMI 719

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           W +LL AC+ H+N+++ E A KHL E +P +  ++VLL+N YA  G+  +  ++R  ++D
Sbjct: 720 WRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKD 779

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE-------- 572
            G++K+ G S IE    VH F  GD  +P S++IY  L+E+   L + G ++        
Sbjct: 780 RGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHE 839

Query: 573 --------TSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                   T+  H E+LAVAFGL++      +R++ NLR+C DCHS+MK TS+V  REIV
Sbjct: 840 KEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIV 899

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD  RFH F  G CSC DYW
Sbjct: 900 LRDVYRFHHFNSGSCSCGDYW 920



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 170/372 (45%), Gaps = 27/372 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G + +  Q+F +L +RD +SW  M+S Y   G+ +E   L S+M    V P    
Sbjct: 87  LYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYV 146

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S++SA TK +    G+ +H  + +        + N L+ +Y   G    A+++    +
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVF--CD 204

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D V + TL+SG+ +    + A ++FDEM    L    + ++ +L         +CA
Sbjct: 205 MLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL--------AACA 256

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           S+G L  G  +H Y+ K  +S D               +IE A+D+F+     NV LW  
Sbjct: 257 SVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNL 316

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ AY       K+ ++F +M+ TG  P+Q T+  +L  C+  G ++ G    S   +  
Sbjct: 317 MLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIK-N 375

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
             +  M   G ++D+  + G L++ A  I  M    DV  W+S++     H   + A   
Sbjct: 376 GFESDMYVSGVLIDMYSKYGCLDK-ARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALAT 434

Query: 481 FKHLTETDPLND 492
           FK + +     D
Sbjct: 435 FKEMQDCGVWPD 446



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 154/348 (44%), Gaps = 43/348 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G  K   ++F  +   D +++NT+IS +   G     L +  +M   G+ PD VT+ SL+
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL--LGRYEIDE 258
           +A   + DL+ GK LH +L ++ M         L+D+Y KCG I  A  +  LG    D 
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG----DR 308

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSC 314
            +VVLW  ++  Y + ++  ++  +F +M    +               +F Y    ++C
Sbjct: 309 TNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGI------------HPNQFTYPCILRTC 356

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
              G +  G  +H    KN    D                ++ A  +   + +++V  WT
Sbjct: 357 TCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWT 416

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           S+IA Y      ++A+  F EM++ G  PD +   +  SAC+    + +G   L   +RV
Sbjct: 417 SMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQG---LQIHARV 473

Query: 420 Y--NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           Y       +  +  +V+L  R G  EE+ +    +    +++ W+ L+
Sbjct: 474 YVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEIT-WNGLI 520


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 207/629 (32%), Positives = 338/629 (53%), Gaps = 61/629 (9%)

Query: 61  HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI--WNSIIENQL--- 115
           H+H++      D  +   V +     G +G+A+++  +  + E K+  WN+++       
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 116 INGYPQEVFAIY--LYLVTRTVLLNKCGKLKEV---CQLFDKLPNRDVISWNTMISCYTS 170
             G  Q +F +     ++T T ++    K+K++    + FD +P R V+SWN M+S Y  
Sbjct: 178 SEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQ 237

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
            G+  E L L  +M   G+ PDE T V++ISA +   D  +  +L   L +  ++++  +
Sbjct: 238 NGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFV 297

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
              L+DMY K G +  A+KL     +   +VV W ++++GY ++ +   A  LF EM+  
Sbjct: 298 RTALLDMYAKFGDLDSARKLFN--TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITA 355

Query: 291 NLIS--WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------- 338
             ++     M+S +          +C  +GAL  G WV  ++ +NQI +           
Sbjct: 356 KKLTPDEVTMVSVI---------SACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 406

Query: 339 -----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                ++E A  +F E++ ++V  + ++I+ +A  GH  +AI+L   M+E G +PD+VTF
Sbjct: 407 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 466

Query: 394 IALLSACSHGGLVDEGYD-FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           I +L+ACSH GL++EG   F S K       P + HY CMVDLLGR G LE++   +  M
Sbjct: 467 IGVLTACSHAGLLEEGRKVFESIKD------PAIDHYACMVDLLGRVGELEDAKRTMERM 520

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P+ P   ++ SLL A R H+ V+L E A   L E +P N G  +LL+NIYA AGR  D+ 
Sbjct: 521 PMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVE 580

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--- 569
           RIR  ++  G+KK  G+S +E GG +HKF   D  +  S++IY +L E+   +++ G   
Sbjct: 581 RIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIA 640

Query: 570 -----LQETSL--------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
                L++            H E+LA+ + L+ +     IR+V NLR+C DCH+ +K+ S
Sbjct: 641 DKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMIS 700

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++  R I++RDN RFH F  G CSC+DYW
Sbjct: 701 KLEGRVIIVRDNNRFHCFNDGLCSCKDYW 729


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 214/655 (32%), Positives = 348/655 (53%), Gaps = 114/655 (17%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFL--VFTGDLGYAQQIIRQGDEPEIKIW 107
           SC S  + +++H+ LITT L+  P  + ++ + L  +F   + YA  +     +P++ ++
Sbjct: 10  SCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIF-APISYAHMVFDHFPQPDLFLY 68

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
           N+I               I +   + T   +   K + + +    +PN+   ++      
Sbjct: 69  NTI---------------IKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAF-----A 108

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
           +   G    G+G+L     EG              + ++  +++G   +LF+        
Sbjct: 109 FKGCG---SGVGVL-----EG-------------EQVRVHAIKLGLENNLFVT------- 140

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
               N L+ MY     + +A+K+         D+  W  ++SGY +  + DEAR+LFDEM
Sbjct: 141 ----NALIGMYVNLDFVVDARKVFDWSP--NRDMYSWNIMLSGYARLGKMDEARQLFDEM 194

Query: 288 VERNLISWTLMISGMLN-------------------QDAEFKYKS----CASIGALYHGI 324
            E++++SWT MISG L                       E+   S    CA++ AL  G 
Sbjct: 195 PEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGR 254

Query: 325 WVHVYIKKNQISIDNIELA--YDLFSEISE---------------KNVYLWTSVIAAYAM 367
           W+HVYIKKN I ++   LA   D++++  E               + V+ W ++I  +A+
Sbjct: 255 WMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAV 314

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G +++AI++F +M+     P++VTF+ALL+ACSHG  V+EG  +    +  Y +KP+++
Sbjct: 315 HGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELE 374

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HYGC+VDLLGRAG L+E+   I+SM + PDV+IW +LL AC+ H++ ++ E   K + E 
Sbjct: 375 HYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKEL 434

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           DP + G HVLLANIY+  G  ++   +R K+ + G KK  G S IE  G  H+F  GD  
Sbjct: 435 DPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRS 494

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETS-LQHRERLAVAFGLIST 590
           +P ++++YL L+E+   L+  G                 +ET+ L+H E+LA+AFGL++T
Sbjct: 495 HPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNT 554

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + KT IRIV NLR+C DCH  +K  S+VY+REI++RD  R+H F+ G CSC DYW
Sbjct: 555 TPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/670 (29%), Positives = 342/670 (51%), Gaps = 89/670 (13%)

Query: 54   IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
            + E +R+H +++      +  +   +       G +  A  +  +  EP++  WNS+I  
Sbjct: 486  VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMING 545

Query: 114  QLINGYPQEVFAIYLYLVTRTV-------------------------------------- 135
             ++NG+      I++ ++   V                                      
Sbjct: 546  CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEE 605

Query: 136  ---------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                     + +KCG L    ++F K+ +  ++SW + I+ Y   G+Y + +GL  +M +
Sbjct: 606  VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQS 665

Query: 187  EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            +GV PD  T+ S++ A      L+ G+++H ++ ++ M  +  + N L++MY KCG + E
Sbjct: 666  KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEE 725

Query: 247  AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
            A+ +  +  +   D+V W T++ GY +++  +EA  LF +M ++      + ++ +L   
Sbjct: 726  ARLVFSKIPVK--DIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVL--- 779

Query: 307  AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                  +CA + AL  G  +H +I +     D                + LA  LF  I 
Sbjct: 780  -----PACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP 834

Query: 352  EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
            +K++  WT +IA Y M G   +AI  F EM   G +PD+ +F  +L+ACSH GL++EG+ 
Sbjct: 835  KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWK 894

Query: 412  FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            F +       ++PK++HY C+VDLL R G+L ++  FI SMPI PD +IW  LL  CR H
Sbjct: 895  FFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIH 954

Query: 472  QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
             +VKLAE   +H+ E +P N   +V+LAN+YA+A + +++ ++R +++  G K+  G S 
Sbjct: 955  HDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSW 1014

Query: 532  IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------LQETSLQ------ 576
            IE GG  + F +G+  +P ++ I ++L ++ M +Q +          + E  ++      
Sbjct: 1015 IEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQC 1074

Query: 577  -HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
             H E+ A+AFG+++     T+R+  N R+CGDCH   K  S+   REIV+RD+ RFH F+
Sbjct: 1075 GHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFK 1134

Query: 636  GGQCSCRDYW 645
             G CSCRD +
Sbjct: 1135 DGLCSCRDAF 1144



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 163/342 (47%), Gaps = 29/342 (8%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG L +  ++FDK+ N  V  WN ++S Y  +G +RE + L  KM   GV  +  T   +
Sbjct: 417 CGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCV 476

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +     L  ++  K +H ++ +     + +++N L+  YFK G +  A  L    E+ E 
Sbjct: 477 LKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFD--ELSEP 534

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEM----VERN-------LISWTLMISGMLNQDAE 308
           DVV W ++++G V +        +F +M    VE +       L++W  + +  L +   
Sbjct: 535 DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALH 594

Query: 309 -FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
            F  K+C S   ++    + +Y K       N+  A ++F ++ +  +  WTS IAAY  
Sbjct: 595 GFGVKACFSEEVVFSNTLLDMYSK-----CGNLNGATEVFVKMGDTTIVSWTSTIAAYVR 649

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G    AI LF EM+  G +PD  T  +++ AC+    +D+G D  S     Y IK  M 
Sbjct: 650 EGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHS-----YVIKNGMG 704

Query: 428 H----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
                   ++++  + G +EE+    + +P+  D+  W++++
Sbjct: 705 SNLPVTNALINMYAKCGSVEEARLVFSKIPV-KDIVSWNTMI 745



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 167/411 (40%), Gaps = 71/411 (17%)

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N  I+ +  MG  R  + LL+K  +  +  +    V  + A  K   LE GK +H  +  
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKK--SLEDGKRVHSVIIS 397

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           + + I  +L   LV MY  CG + + +K+  +   D+  V LW  L+S Y K     E+ 
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK--VFLWNLLMSEYAKIGNFRESV 455

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEF-KYKSCASIGALYHGIWVHVYIKKNQISIDN- 339
            LF +M +  ++      + +L   A   K K C  +    HG  + +    N   +++ 
Sbjct: 456 SLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV----HGYVLKLGFGSNTAVVNSL 511

Query: 340 ---------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                    +E A++LF E+SE +V  W S+I    + G +   +++F++M   G + D 
Sbjct: 512 IAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDL 571

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGCMVDLLGRAGHLEESA 446
            T +++L A ++ G +      L +    + +K     ++     ++D+  + G+L  + 
Sbjct: 572 TTLVSVLVAWANIGNLS-----LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGAT 626

Query: 447 NFITSM----------------------------------PIPPDVSIWSSLLRACRCHQ 472
                M                                   + PD+   +S++ AC C  
Sbjct: 627 EVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSS 686

Query: 473 NVKLAEHAFKHLTETD-----PLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
           ++        ++ +       P+ +     L N+YAK G +++   +  K+
Sbjct: 687 SLDKGRDVHSYVIKNGMGSNLPVTNA----LINMYAKCGSVEEARLVFSKI 733


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 202/655 (30%), Positives = 337/655 (51%), Gaps = 79/655 (12%)

Query: 39  PVSLDVIMVERSCSSIDE---FERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + ++ V   C+S+      ++ H   +T+ ++++  +   + +     G +  A  +
Sbjct: 227 PDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTV 286

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
                  ++  WN+     ++ GY Q                   G+ ++  +LF+++  
Sbjct: 287 FSNMPVKDVVSWNA-----MVAGYSQ------------------IGRFEDAVRLFEQMQE 323

Query: 156 R----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
                DV++W+  IS Y   G+  E LG+  +M + G+ P+EVT++S++S    +  L  
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383

Query: 212 GKNLHLFLEESTMKISGS-------LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           GK +H +  +  M +  +       ++N L+DMY KC K+  A+ +       E DVV W
Sbjct: 384 GKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTW 443

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISW--TLMISGMLNQDAEFKYKSCASIGALYH 322
           T ++ GY +  + ++A  L  EM E +  +      IS  L         +CAS+ AL  
Sbjct: 444 TVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL--------VACASLAALSI 495

Query: 323 GIWVHVYIKKNQIS----------ID------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
           G  +H Y  +NQ +          ID      +I  A  +F  + EKN   WTS++  Y 
Sbjct: 496 GKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYG 555

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
           M G+ ++A+ +F EM   G K D VT + +L ACSH G++D+G ++ ++    + + P  
Sbjct: 556 MHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGP 615

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HY C+VDLLGRAG L  +   I  MP+ P   +W +LL  CR H  V+L E+A K +TE
Sbjct: 616 EHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITE 675

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
               NDG++ LL+N+YA AGR  D++RIR  +R  G+KK+ G S +E       F  GD 
Sbjct: 676 LASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDK 735

Query: 547 FNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLIST 590
            +PH++EIY +L++    ++  G + ET                 +H E+LA+A+G+++T
Sbjct: 736 THPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTT 795

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +   IRI  NLR+CGDCH+     S++ + EI++RD+ RFH F+ G CSC+ YW
Sbjct: 796 PQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 193/423 (45%), Gaps = 58/423 (13%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDE 193
            + ++CG L +  ++FD++P  DV+SWN++I  Y  +G  +  L + SKM  E G  PD+
Sbjct: 170 AMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDD 229

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           +T+V+++     +    +GK  H F   S M  +  + N LVDMY K G + EA  +   
Sbjct: 230 ITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSN 289

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMISGMLNQDAEF 309
             +   DVV W  +V+GY +    ++A RLF++M E     ++++W+  ISG   +   +
Sbjct: 290 MPVK--DVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGY 347

Query: 310 K-----------------------YKSCASIGALYHGIWVHVY-------IKKNQISIDN 339
           +                          CAS+GAL HG  +H Y       ++KN    +N
Sbjct: 348 EALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDEN 407

Query: 340 ---------------IELAYDLFSEIS--EKNVYLWTSVIAAYAMAGHAQKAIDLFLEM- 381
                          +++A  +F  +S  E++V  WT +I  Y+  G A KA++L  EM 
Sbjct: 408 MVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMF 467

Query: 382 -EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
            E+  T+P+  T    L AC+    +  G    +   R       +    C++D+  + G
Sbjct: 468 EEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCG 527

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
            + ++     +M    +V+ W+SL+     H   + A   F+ +       DG   LL  
Sbjct: 528 DIGDARLVFDNMMEKNEVT-WTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGV-TLLVV 585

Query: 501 IYA 503
           +YA
Sbjct: 586 LYA 588



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 129/299 (43%), Gaps = 23/299 (7%)

Query: 141 GKLKEVCQLFDKLPNRD--VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           G L     L  + P  D  V  WN++I  Y + G   + L     M +   +PD  T   
Sbjct: 73  GCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPF 132

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           +  A  ++  +  G + H     +    +  + N LV MY +CG + +A+K+    E+  
Sbjct: 133 VFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFD--EMPV 190

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMV-ERNLISWTLMISGMLNQDAEFKYKSCASI 317
            DVV W +++  Y K  +   A  +F +M  E       + +  +L   A    +   S+
Sbjct: 191 WDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTR---SL 247

Query: 318 GALYHGIWVHVYIKKNQI----------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +HG  V   + +N                ++ A  +FS +  K+V  W +++A Y+ 
Sbjct: 248 GKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQ 307

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS--KKSRVYNIKP 424
            G  + A+ LF +M+E   K D VT+ A +S  +  GL   GY+ L   ++     IKP
Sbjct: 308 IGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGL---GYEALGVCRQMLSSGIKP 363



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 2/135 (1%)

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
           S+  VY W S+I +Y   G A K +  F  M      PD  TF  +  AC     V  G 
Sbjct: 88  SDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCG- 146

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
           D     SRV      +     +V +  R G L ++      MP+  DV  W+S++ +   
Sbjct: 147 DSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPV-WDVVSWNSIIESYAK 205

Query: 471 HQNVKLAEHAFKHLT 485
               K+A   F  +T
Sbjct: 206 LGKPKMALEMFSKMT 220


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/537 (36%), Positives = 295/537 (54%), Gaps = 39/537 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G+L     +  +L   DV+SW  MI+ YT   ++ E L L  +M  +G+  D +   S
Sbjct: 462 KHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSS 521

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            ISA   ++ L  G+ +H     S      S+ N LV +Y +CG+  +A   L   +ID 
Sbjct: 522 AISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDA--YLAFEKIDA 579

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSC 314
            D + W  L+SG+ +S   +EA ++F +M    VE NL ++   +S   N  A  K    
Sbjct: 580 KDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANT-ANIKQ--- 635

Query: 315 ASIGALYHGIWVHV-YIKKNQIS---------IDNIELAYDLFSEISEKNVYLWTSVIAA 364
              G   H + +   Y  + + S           +IE A   F E+ EKNV  W ++I  
Sbjct: 636 ---GKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITG 692

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           Y+  G+  +A+ LF EM++ G  P+ VTF+ +LSACSH GLV+EG  +    S+ + + P
Sbjct: 693 YSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVP 752

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           K +HY C+VDLLGRA  L  +  FI  MPI PD  IW +LL AC  H+N+++ E A +HL
Sbjct: 753 KPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHL 812

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P +   +VLL+N+YA +G+ D   R R  ++D G+KK+ G S IE    +H F  G
Sbjct: 813 LELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVG 872

Query: 545 DIFNPHSEEIYLMLNEIE----------------MTLQQQGLQETSLQHRERLAVAFGLI 588
           D  +P +E+IY  ++++                   ++Q+    T+  H E+LAVAFGL+
Sbjct: 873 DRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLL 932

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S +    IR++ NLR+C DCH+++K  S++ NR IV+RD  RFH F+GG CSC+DYW
Sbjct: 933 SLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 184/398 (46%), Gaps = 59/398 (14%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  ++   + F      +V+ WN M+  Y  +G   E   +  +M  EG+ P++ T  S
Sbjct: 361 KCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPS 420

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++   T L  L++G+ +H  + +S  + +  + + L+DMY K G++  A+ +L R  + E
Sbjct: 421 ILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQR--LRE 478

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            DVV WT +++GY + +   EA +LF EM  + + S  +  S  ++        +CA I 
Sbjct: 479 EDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAIS--------ACAGIQ 530

Query: 319 ALYHGIWVHV--YIK--KNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIA 363
           AL  G  +H   YI      +SI N            + AY  F +I  K+   W ++I+
Sbjct: 531 ALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALIS 590

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDF 412
            +A +GH ++A+ +F +M + G + +  TF + +SA +           H  ++  GYD 
Sbjct: 591 GFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDS 650

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH- 471
            ++ S V            ++ L  + G +E++      MP   +V  W++++     H 
Sbjct: 651 ETEASNV------------LITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHG 697

Query: 472 ---QNVKLAEHAFK------HLTETDPLNDGAHVLLAN 500
              + V L E   +      H+T    L+  +HV L N
Sbjct: 698 YGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVN 735



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 168/355 (47%), Gaps = 35/355 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +K G +     +F++L  +D +SW  MIS  +  G   E + L  +M    V P    
Sbjct: 156 LYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYV 215

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++SA TK+   ++G+ LH F+ +  +     + N LV +Y + G +  A+++  +  
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSK-- 273

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D + + +L+SG  +    D A +LF++M    +    + ++ +L+        +CA
Sbjct: 274 MHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLS--------ACA 325

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           S+GA Y G  +H Y+ K  +S D               +IE A++ F     +NV LW  
Sbjct: 326 SVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNV 385

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ AY   G+  ++  +FL+M+  G  P+Q T+ ++L  C+  G +D     L ++    
Sbjct: 386 MLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALD-----LGEQIHTQ 440

Query: 421 NIKPKMQH--YGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            IK   Q   Y C  ++D+  + G L+ +   +  +    DV  W++++     H
Sbjct: 441 VIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQH 494



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 189/431 (43%), Gaps = 62/431 (14%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G++    +LFD +P+ +V  WN +IS   +  +  + LGL S M  E V+PDE T  S++
Sbjct: 59  GEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118

Query: 201 SARTKLR-DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            A +  +   ++ + +H  +       S  + N L+D+Y K G +  A+ +  R  +   
Sbjct: 119 RACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK-- 176

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           D V W  ++SG  ++   DEA  LF +M +  +I    + S +L+        +C  I  
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLS--------ACTKIEL 228

Query: 320 LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
              G  +H +I K  +S +               N+  A  +FS++  ++   + S+I+ 
Sbjct: 229 FKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISG 288

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG-------------------- 404
            A  G + +A+ LF +M+    KPD VT  +LLSAC+  G                    
Sbjct: 289 LAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSD 348

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHY-----------GCMVDLLGRAGHLEESANFITSMP 453
           L+ EG   L    + ++I+   +++             M+   G+ G+L ES      M 
Sbjct: 349 LIIEG-SLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQ 407

Query: 454 IP---PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLD 509
           I    P+   + S+LR C     + L E     + ++    N     +L ++YAK G LD
Sbjct: 408 IEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELD 467

Query: 510 DMSRIRMKLRD 520
               I  +LR+
Sbjct: 468 TARGILQRLRE 478



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 182/436 (41%), Gaps = 73/436 (16%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
             L ++ G L    Q+F K+  RD IS+N++IS     G     L L  KM  + + PD 
Sbjct: 255 VTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDC 314

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFL----EESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
           VT+ SL+SA   +     GK LH ++      S + I GSLL    D+Y KC  I  A +
Sbjct: 315 VTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLL----DLYVKCFDIETAHE 370

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
                E +  +VVLW  ++  Y +     E+  +F +M           I G++     +
Sbjct: 371 YFLTTETE--NVVLWNVMLVAYGQLGNLSESYWIFLQM----------QIEGLMPNQYTY 418

Query: 310 K--YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISE 352
               ++C S+GAL  G  +H  + K+    +                ++ A  +   + E
Sbjct: 419 PSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLRE 478

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--- 409
           ++V  WT++IA Y       +A+ LF EME  G + D + F + +SAC+    +++G   
Sbjct: 479 EDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQI 538

Query: 410 ----------------------YDFLSKKSRVYNIKPKMQ-----HYGCMVDLLGRAGHL 442
                                 Y    +    Y    K+       +  ++    ++GH 
Sbjct: 539 HAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHC 598

Query: 443 EESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAE--HAFKHLTETDPLNDGAHVL 497
           EE+    + M    +  ++  + S + A     N+K  +  HA    T  D   + ++VL
Sbjct: 599 EEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVL 658

Query: 498 LANIYAKAGRLDDMSR 513
           +  +Y+K G ++D  R
Sbjct: 659 I-TLYSKCGSIEDAKR 673



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 147/330 (44%), Gaps = 68/330 (20%)

Query: 49  RSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           R+C+S+   D  E+IH+ +I +    +  + + + +     G+L  A+ I+++  E ++ 
Sbjct: 423 RTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVV 482

Query: 106 IWNSII-------------------ENQ-------------------------------- 114
            W ++I                   ENQ                                
Sbjct: 483 SWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQS 542

Query: 115 LINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
            I+GY +++ +I   LV+   L  +CG+ ++    F+K+  +D ISWN +IS +   G  
Sbjct: 543 YISGYSEDL-SIGNALVS---LYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHC 598

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
            E L + S+M   GV  +  T  S +SA     +++ GK +H  + ++         N L
Sbjct: 599 EEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVL 658

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           + +Y KCG I +A++    +E+ E +VV W  +++GY +     EA  LF+EM +  L+ 
Sbjct: 659 ITLYSKCGSIEDAKREF--FEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMP 716

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGI 324
             +   G+L+        +C+ +G +  G+
Sbjct: 717 NHVTFVGVLS--------ACSHVGLVNEGL 738



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 56/341 (16%)

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
            K LH  + +S       L + L+D+Y   G++  A KL    +I   +V  W  ++SG 
Sbjct: 29  AKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFD--DIPSSNVSFWNKVISGL 86

Query: 272 VKSNERDEARRLFDEMVERNLI----SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           +      +   LF  M+  N+     ++  ++       A F+         ++HG    
Sbjct: 87  LAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSS 146

Query: 328 VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
             +    I +     +++LA  +F  +  K+   W ++I+  +  G   +AI LF +M +
Sbjct: 147 PLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHK 206

Query: 384 TGTKPDQVTFIALLSACS-----------HGGLVDEGYDFLSKKSRVYN----------- 421
           +   P    F ++LSAC+           HG +V  G   LS ++ V N           
Sbjct: 207 SAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWG---LSSETFVCNALVTLYSRWGN 263

Query: 422 ------IKPKMQH-----YGCMVDLLGRAGHLEESANFITSMPI---PPDVSIWSSLLRA 467
                 I  KM       Y  ++  L + G  + +      M +    PD    +SLL A
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323

Query: 468 CRC----HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504
           C      ++  +L  +  K    +D + +G+   L ++Y K
Sbjct: 324 CASVGAGYKGKQLHSYVIKMGMSSDLIIEGS---LLDLYVK 361


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 211/675 (31%), Positives = 330/675 (48%), Gaps = 88/675 (13%)

Query: 50  SCSSIDEFER---IHSHLITTNLMR-DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           +C+SI   E    IHS +  T  ++ D  +   +       G L  A+++  +     + 
Sbjct: 130 ACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVS 189

Query: 106 IWNSIIENQLINGYPQEVFAIY-------------------------------------- 127
            WN++I     +G+ +E   +Y                                      
Sbjct: 190 SWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSR 249

Query: 128 ---LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
              L L  +  LL    +C  L +  ++F +LP RDV+SW+ MI+ +    ++ E +   
Sbjct: 250 GTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFY 309

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
           SKM  EGV P+  T  S++ A   + DL  G+ +H  +  +  KI+      LVD+Y   
Sbjct: 310 SKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSY 369

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           G + EA+ L    +I+  D  LWT L+ GY K   R     L+ EM     +  T +I  
Sbjct: 370 GSLDEARSLFD--QIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYS 427

Query: 302 MLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
            +         +CAS+GA       H  I+ + +  D               N+E A  +
Sbjct: 428 CV-------ISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQV 480

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F ++S ++   WT++IA YA  G    A+ L+ EME  G +P ++TF+ +L ACSH GL 
Sbjct: 481 FDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQ 540

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           ++G          Y + P + HY C++DLL RAG L ++   I +MP+ P+   WSSLL 
Sbjct: 541 EQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLG 600

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           A R H++VK A HA   +T+ DP++  ++VLL+N++A  G L  M+ +R  +   G+KK+
Sbjct: 601 ASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKR 660

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ---------- 576
            G S IE    +H+F  GD  +P  +EI+  L  +   +++ G    S +          
Sbjct: 661 RGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEK 720

Query: 577 ------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
                 H E+LA+AFGLI+T+  TT+RI N LRIC DCHS +K  S +  REI++RD+ R
Sbjct: 721 ELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSR 780

Query: 631 FHRFQGGQCSCRDYW 645
           FH+F+ GQCSC DYW
Sbjct: 781 FHKFRDGQCSCGDYW 795



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 164/345 (47%), Gaps = 36/345 (10%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            KCG +      FD +  ++  SW +M++ Y   G YR  L L  +M    + P+ V   
Sbjct: 69  GKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYT 125

Query: 198 SLISARTKLRDLEMGKNLHLFLEEST-MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           +++ A   ++ LE GK +H  +  +  +K+   L N L+ MY KCG + +A++L  R  +
Sbjct: 126 TVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFER--M 183

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCA 315
               V  W  +++ Y +S   +EA RL+++M VE ++ ++T ++S            +C+
Sbjct: 184 SGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLS------------ACS 231

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           ++G L  G  +H  I      +D                ++ A  +F  +  ++V  W++
Sbjct: 232 NLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSA 291

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +IAA+A      +AI+ + +M+  G +P+  TF ++L AC+  G +  G   +  +    
Sbjct: 292 MIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGR-AVHDQILGN 350

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             K  + +   +VDL    G L+E+ +    +    D  +W+ L+
Sbjct: 351 GYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-NRDEGLWTVLI 394



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 45/247 (18%)

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-----YK- 312
            +V L   +V  Y K      AR  FD +  +N  SW  M++    Q+  ++     YK 
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYA-QNGHYRAALDLYKR 114

Query: 313 ---------------SCASIGALYHGIWVHVYIKKNQ-ISID---------------NIE 341
                          +CASI AL  G  +H  I   + + +D               ++E
Sbjct: 115 MDLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLE 174

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  LF  +S ++V  W ++IAAYA +GH ++AI L+ +M+    +P   TF ++LSACS
Sbjct: 175 DAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSACS 231

Query: 402 HGGLVDEGYDFLSK-KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           + GL+D+G    +   SR   +   +Q+   ++ +  R   L+++A     +P   DV  
Sbjct: 232 NLGLLDQGRKIHALISSRGTELDLSLQN--ALLTMYARCKCLDDAAKIFQRLP-RRDVVS 288

Query: 461 WSSLLRA 467
           WS+++ A
Sbjct: 289 WSAMIAA 295


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/588 (33%), Positives = 306/588 (52%), Gaps = 52/588 (8%)

Query: 101 EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN------------KCGKLKEVCQ 148
           EP ++ + S++      G   +   I+  + +R   L+            +C  L +  +
Sbjct: 218 EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAK 277

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F +LP RDV+SW+ MI+ +    ++ E +   SKM  EGV P+  T  S++ A   + D
Sbjct: 278 IFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD 337

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L  G+ +H  +  +  KI+      LVD+Y   G + EA+ L    +I+  D  LWT L+
Sbjct: 338 LRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFD--QIENRDEGLWTVLI 395

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
            GY K   R     L+ EM     +  T +I   +         +CAS+GA       H 
Sbjct: 396 GGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCV-------ISACASLGAFADARQAHS 448

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            I+ + +  D               N+E A  +F ++S ++   WT++IA YA  G    
Sbjct: 449 DIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGL 508

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A+ L+ EME  G +P ++TF+ +L ACSH GL ++G          Y + P + HY C++
Sbjct: 509 ALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCII 568

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLL RAG L ++   I +MP+ P+   WSSLL A R H++VK A HA   +T+ DP++  
Sbjct: 569 DLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPA 628

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
           ++VLL+N++A  G L  M+ +R  +   G+KK+ G S IE    +H+F  GD  +P  +E
Sbjct: 629 SYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQE 688

Query: 554 IYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTIR 597
           I+  L  +   +++ G    S +                H E+LA+AFGLI+T+  TT+R
Sbjct: 689 IFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLR 748

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I N LRIC DCHS +K  S +  REI++RD+ RFH+F+ GQCSC DYW
Sbjct: 749 IFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 162/345 (46%), Gaps = 35/345 (10%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            KCG +      FD +  ++  SW +M++ Y   G YR  L L  +M    + P+ V   
Sbjct: 69  GKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYT 125

Query: 198 SLISARTKLRDLEMGKNLHLFLEEST-MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           +++ A   +  LE GK +H  +  +  +K+   L N L+ MY KCG + +A++L  R   
Sbjct: 126 TVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMS- 184

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCA 315
               V  W  +++ Y +S   +EA RL+++M VE ++ ++T ++S            +C+
Sbjct: 185 GRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLS------------ACS 232

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           ++G L  G  +H  I      +D                ++ A  +F  +  ++V  W++
Sbjct: 233 NLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSA 292

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +IAA+A      +AI+ + +M+  G +P+  TF ++L AC+  G +  G   +  +    
Sbjct: 293 MIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGR-AVHDQILGN 351

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             K  + +   +VDL    G L+E+ +    +    D  +W+ L+
Sbjct: 352 GYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-NRDEGLWTVLI 395



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 46/248 (18%)

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-----YK- 312
            +V L   +V  Y K      AR  FD +  +N  SW  M++    Q+  ++     YK 
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYA-QNGHYRAALDLYKR 114

Query: 313 ---------------SCASIGALYHGIWVHVYIKKNQ-ISID---------------NIE 341
                          +CASI AL  G  +H  I   + + +D               ++E
Sbjct: 115 MDLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLE 174

Query: 342 LAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
            A  LF  +S  ++V  W ++IAAYA +GH ++AI L+ +M+    +P   TF ++LSAC
Sbjct: 175 DAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSAC 231

Query: 401 SHGGLVDEGYDFLSK-KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           S+ GL+D+G    +   SR   +   +Q+   ++ +  R   L+++A     +P   DV 
Sbjct: 232 SNLGLLDQGRKIHALISSRGTELDLSLQN--ALLTMYARCKCLDDAAKIFQRLP-RRDVV 288

Query: 460 IWSSLLRA 467
            WS+++ A
Sbjct: 289 SWSAMIAA 296



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 54/240 (22%)

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  I+ KN Y W S++ AYA  GH + A+DL+  M+    +P+ V +  +L AC+    +
Sbjct: 81  FDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGACASIEAL 137

Query: 407 DEGYDFLSKKSRVYNIK--------------------------------PKMQHYGCMVD 434
           +EG    S+ S    +K                                  +  +  M+ 
Sbjct: 138 EEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIA 197

Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK-HL---TETDPL 490
              ++GH EE+      M + P V  ++S+L AC    N+ L +   K H    +    L
Sbjct: 198 AYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSAC---SNLGLLDQGRKIHALISSRGTEL 254

Query: 491 NDGAHVLLANIYAKAGRLDDMSRI--RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           +      L  +YA+   LDD ++I  R+  RD          ++     +  F   D+F+
Sbjct: 255 DLSLQNALLTMYARCKCLDDAAKIFQRLPRRD----------VVSWSAMIAAFAETDLFD 304


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 208/688 (30%), Positives = 336/688 (48%), Gaps = 80/688 (11%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
           ++ +V PV  +   + + C    + +R   IH  LIT +   +    T V         +
Sbjct: 139 RYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQI 198

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYL--------------------- 128
             A ++  +  E ++  WN+II     NG+ ++   + L                     
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAA 258

Query: 129 -----YLVTRTV---------------------LLNKCGKLKEVCQLFDKLPNRDVISWN 162
                 +V +++                     + +KCG ++    +FD +  + V+SWN
Sbjct: 259 ADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWN 318

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
           +M+  Y   G   + + +  KM  EG+ P  VT++  + A   L DLE GK +H F+++ 
Sbjct: 319 SMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQL 378

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            +    S++N L+ MY KC ++  A  +     ++    V W  ++ GY ++    EA  
Sbjct: 379 NLGSDISVMNSLISMYSKCKRVDIASDIFN--NLNGRTHVSWNAMILGYAQNGRVSEALN 436

Query: 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI------- 335
            F EM    +   +  +  ++   AE    S        HG+ +   + KN         
Sbjct: 437 CFSEMKSLGMKPDSFTMVSVIPALAEL---SVTRHAKWIHGLIIRSCLDKNIFVTTALVD 493

Query: 336 ---SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  I +A  LF  IS+++V  W ++I  Y   G  + A+DLF +M++   +P+ +T
Sbjct: 494 MYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDIT 553

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           +++++SACSH GLVDEG        + Y ++P M HYG MVDLLGRAG ++E+ +FI +M
Sbjct: 554 YLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENM 613

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           PI P ++++ +   AC+ H+N+++ E A K L E +P   G HVLLANIYA   +   ++
Sbjct: 614 PISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVA 673

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--- 569
            +R  +   GLKK  G S++E    VH F SG   +P S+ IY  L E+   ++  G   
Sbjct: 674 EVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVP 733

Query: 570 -----------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
                      +QE  L  H E+LA+AFGL++TS  TTI +  NLR+CGDCH+  K  S 
Sbjct: 734 DTNLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISL 793

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           V  REI++RD  RFH F+ G CSC DYW
Sbjct: 794 VTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 172/413 (41%), Gaps = 61/413 (14%)

Query: 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +L+      L +K G + E  ++F+ + ++    ++TM+  Y         L  L +M  
Sbjct: 81  HLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRY 140

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           + V P       L+       DL+ GK +H  L  ++   +   +  +V+MY KC +I +
Sbjct: 141 DDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDD 200

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A K+  R  + E D+V W T+++G+ ++    +A  L   M +      ++ +  +L   
Sbjct: 201 AYKMFDR--MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVL--- 255

Query: 307 AEFKYKSCASIGALYHGIWVHVY-IKKNQISIDNI--------------ELAYDLFSEIS 351
                 + A +G L  G  +H Y I+     + NI              E A  +F  + 
Sbjct: 256 -----PAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD 310

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +K V  W S++  Y   G  +KAI +F +M E G  P  VT +  L AC+  G ++ G  
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-K 369

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           F+ K                                F+  + +  D+S+ +SL+      
Sbjct: 370 FVHK--------------------------------FVDQLNLGSDISVMNSLISMYSKC 397

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           + V +A   F +L     ++  A +L    YA+ GR+ +      +++ +G+K
Sbjct: 398 KRVDIASDIFNNLNGRTHVSWNAMILG---YAQNGRVSEALNCFSEMKSLGMK 447


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 294/563 (52%), Gaps = 60/563 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +     +F+ +     + +N+MI  Y   G     +     M + G + D  T   ++
Sbjct: 119 GDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVL 178

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            +  +L  + MGK +H  +    ++    +   L+ +Y KCG+I +A K+     I   D
Sbjct: 179 KSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR--D 236

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLN 304
           V  W  L++GY KS   D A  +F+ M  RN++SWT MISG                M+ 
Sbjct: 237 VSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVK 296

Query: 305 QDAEFK---------YKSCASIGALYHGIWVH---------------VYIKKNQISIDNI 340
           +D+  +           +CA +  L  G  +H               + +        ++
Sbjct: 297 EDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSL 356

Query: 341 ELAYDLFSEIS--EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
             A + F +++  EKN+  W ++I AYA  GH  +A+  F EM + G +PD +TF  LLS
Sbjct: 357 VDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLS 416

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
            CSH GLVD G  + +  S  Y+I P+++HY C+ DLLGRAG L E++  +  MP+P   
Sbjct: 417 GCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGP 476

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
           SIW SLL ACR H+N+++AE A + L   +P N G +VLL+N+YA+AGR  ++ ++R  +
Sbjct: 477 SIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIV 536

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS--- 574
           +  G KK  G S IE  G  H F  GD  +P  +EIY+ L  +   ++  G   +TS   
Sbjct: 537 KSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVL 596

Query: 575 ------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                       + H E+LAVAFG+++T  +T +R+  NLRICGDCH+ M   S++Y RE
Sbjct: 597 HDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGRE 656

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           +++RD  RFH F+GG CSC DYW
Sbjct: 657 VIVRDINRFHHFKGGCCSCGDYW 679



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 29/248 (11%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H  ++   L  D  ++T +       G++  A ++       ++  WN+     L+ GY
Sbjct: 193 VHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNA-----LLAGY 247

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                              K G +     +F+++P R+++SW TMIS Y+  G+ ++ L 
Sbjct: 248 ------------------TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 289

Query: 180 LLSKMGAE--GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
           L  +M  E  GV P+ VT++S++ A  +L  LE G+ +H       +  + S+L  L  M
Sbjct: 290 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAM 349

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL----I 293
           Y KCG + +A+    +   +E +++ W T+++ Y       +A   F EM++  +    I
Sbjct: 350 YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDI 409

Query: 294 SWTLMISG 301
           ++T ++SG
Sbjct: 410 TFTGLLSG 417


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 194/564 (34%), Positives = 322/564 (57%), Gaps = 34/564 (6%)

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
           +   + GY  ++F     +V    + + CGKL++  ++FD++P R+++SW +MI  Y   
Sbjct: 100 QQAFVFGYQSDIFVSSALIV----MYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155

Query: 172 GMYREGLGLLSKM------GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           G   + + L   +        + +  D + +VS+ISA +++    + +++H F+ +    
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFD 215

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
              S+ N L+D Y K G+ G A       +I + D V + +++S Y +S   +EA  +F 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275

Query: 286 EMVERNLISW-TLMISGML---NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI---- 337
            +V+  ++++  + +S +L   +     +   C     +  G+   V +  + I +    
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             +E A   F  +  KNV  WT++IA Y M GHA KA++LF  M ++G +P+ +TF+++L
Sbjct: 336 GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           +ACSH GL  EG+ + +     + ++P ++HYGCMVDLLGRAG L+++ + I  M + PD
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPD 455

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             IWSSLL ACR H+NV+LAE +   L E D  N G ++LL++IYA AGR  D+ R+RM 
Sbjct: 456 SIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMI 515

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
           +++ GL K  G+SL+E  G VH F  GD  +P  E+IY  L E+   L + G        
Sbjct: 516 MKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSV 575

Query: 571 --------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                   +E +L+ H E+LA+AFG+++T   +T+ +V NLR+C DCH+ +K+ S++ +R
Sbjct: 576 CHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDR 635

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           E V+RD  RFH F+ G CSC DYW
Sbjct: 636 EFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (7%)

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + + +V+ W SVIA  A +G + +A+  F  M +    P + +F   + ACS        
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACS------SL 89

Query: 410 YDFLSKK-----SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           +D  S K     + V+  +  +     ++ +    G LE++      +P    VS W+S+
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS-WTSM 148

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           +R    + N   A   FK L   +  +D A  L
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFL 181


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 201/553 (36%), Positives = 299/553 (54%), Gaps = 57/553 (10%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           ++ +T LL+   K G LK   ++F  +P RDV++ N MIS  +  G   E   L   M  
Sbjct: 45  MILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM-- 102

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
                +  +  S+I+   KL D+   +   L  + + +K   S  N ++D Y K  ++  
Sbjct: 103 --TERNSCSWNSMITCYCKLGDINSAR---LMFDCNPVKDVVSW-NAIIDGYCKSKQLVA 156

Query: 247 AQKL---LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           AQ+L   +G       + V W T++S YV+  E   A  +F +M   N+    + +  +L
Sbjct: 157 AQELFLLMGSAR----NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLL 212

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
           +        +CA +GAL  G W+H YI+  ++ ID                +E A D+F 
Sbjct: 213 S--------ACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFH 264

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            +S KN++ W S+I    M G  ++AI  F+ ME+ G KPD VTF+ +LS CSH GL+  
Sbjct: 265 GLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSA 324

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G  + S+   VY ++P ++HYGCMVDLLGRAG+L+E+   I +MP+ P+  +  SLLRAC
Sbjct: 325 GQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRAC 384

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           + H++ KL E   + L E DP + G +V L+N+YA   R DD++  R  +   G+ K  G
Sbjct: 385 QIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPG 444

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QET 573
            S IE    VH+F +GD  +P   +I   L+EI   L+ QG                +E 
Sbjct: 445 CSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEG 504

Query: 574 SLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
           +++ H ER+AVAFGL+ST    TIR+V NLR C DCHS MK+ S  + REI++RD  RFH
Sbjct: 505 AIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFH 564

Query: 633 RFQGGQCSCRDYW 645
            F+ G CSC DYW
Sbjct: 565 HFRNGSCSCNDYW 577



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 162/408 (39%), Gaps = 71/408 (17%)

Query: 36  NVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           +V P      ++ RSC+   E    E  H  ++      D  + T + +F    GDL  A
Sbjct: 5   DVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCA 64

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT--------VLLNKCGKLK 144
           +++       ++   N++I     +GY +E   ++  +  R             K G + 
Sbjct: 65  KRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDIN 124

Query: 145 EVCQLFDKLPNRDVIS--------------------------------WNTMISCYTSMG 172
               +FD  P +DV+S                                WNTMIS Y   G
Sbjct: 125 SARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCG 184

Query: 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
            +   + +  +M +E V P EVTMVSL+SA   L  L+MG+ +H ++    +KI   L N
Sbjct: 185 EFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGN 244

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            L+DMY KCG +  A  +   + +   ++  W +++ G   +   +EA   F  M +  +
Sbjct: 245 ALIDMYCKCGALEAAIDVF--HGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGI 302

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352
               +   G+L+         C+  G L  G          Q     +   Y L     E
Sbjct: 303 KPDGVTFVGILS--------GCSHSGLLSAG----------QRYFSEMLGVYGL-----E 339

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
             V  +  ++     AG+ ++A++L   M     KP+ +   +LL AC
Sbjct: 340 PGVEHYGCMVDLLGRAGYLKEALELIRAMP---MKPNSMVLGSLLRAC 384



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 108/250 (43%), Gaps = 55/250 (22%)

Query: 258 EVDVVLWTTLVSGYVKSNE-------------RD------------------EARRLFDE 286
           E D++L T L+  Y K  +             RD                  EAR LFD 
Sbjct: 42  EYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDN 101

Query: 287 MVERNLISWTLMIS-----GMLNQDAEFKY-----KSCASIGALYHGIWVHVYIKKNQIS 336
           M ERN  SW  MI+     G +N  A   +     K   S  A+  G     Y K  Q+ 
Sbjct: 102 MTERNSCSWNSMITCYCKLGDINS-ARLMFDCNPVKDVVSWNAIIDG-----YCKSKQLV 155

Query: 337 IDNIELAYDLFSEI-SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
                 A +LF  + S +N   W ++I+AY   G    AI +F +M+    KP +VT ++
Sbjct: 156 A-----AQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVS 210

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           LLSAC+H G +D G +++    R   +K  +     ++D+  + G LE + +    +   
Sbjct: 211 LLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLS-R 268

Query: 456 PDVSIWSSLL 465
            ++  W+S++
Sbjct: 269 KNIFCWNSII 278



 Score = 39.3 bits (90), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 23/200 (11%)

Query: 36  NVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           NV P  + ++ +  +C+   ++D  E IH ++ T  L  D  +   + +     G L  A
Sbjct: 200 NVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAA 259

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC--- 140
             +        I  WNSII    +NG  +E  A ++ +         VT   +L+ C   
Sbjct: 260 IDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHS 319

Query: 141 GKLKEVCQLFDKLPN-----RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           G L    + F ++         V  +  M+      G  +E L L+  M    + P+ + 
Sbjct: 320 GLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM---PMKPNSMV 376

Query: 196 MVSLISARTKLRDLEMGKNL 215
           + SL+ A    +D ++G+ +
Sbjct: 377 LGSLLRACQIHKDTKLGEQV 396


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 205/588 (34%), Positives = 309/588 (52%), Gaps = 74/588 (12%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           +I+ G E ++      + N LIN Y                  +K G+L++  ++FD + 
Sbjct: 274 VIKHGLESDV-----FVSNALINMY------------------SKFGRLQDAQRVFDGME 310

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
            RD++SWN++I+ Y         LG   +M   G+ PD +T+VSL S   +L D  +G+ 
Sbjct: 311 VRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRA 370

Query: 215 LHLFLEEST-MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
           +H F+     +++   + N LV+MY K G I  A+ +    ++   DV+ W TL++GY +
Sbjct: 371 VHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFE--QLPSRDVISWNTLITGYAQ 428

Query: 274 SNERDEARRLFDEMVERNLI-----SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           +    EA   ++ M E   I     +W  ++               + +GAL  G+ +H 
Sbjct: 429 NGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAY------------SHVGALQQGMKIHG 476

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            + KN + +D                +E A  LF EI ++    W ++I++  + GH +K
Sbjct: 477 RLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEK 536

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A+ LF +M   G K D +TF++LLSACSH GLVDE         + Y IKP ++HYGCMV
Sbjct: 537 ALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMV 596

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DL GRAG+LE++ N +++MPI  D SIW +LL ACR H N +L   A   L E D  N G
Sbjct: 597 DLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVG 656

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            +VLL+NIYA  G+ +   ++R   RD GL+K  G+S +  G  V  F +G+  +P   E
Sbjct: 657 YYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAE 716

Query: 554 IYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIR 597
           IY  L  +   ++  G                 +E    H ERLA+ FG+IST  K+ IR
Sbjct: 717 IYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIR 776

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I  NLR+CGDCH+  K  S++  REI++RD+ RFH F+ G CSC DYW
Sbjct: 777 IFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 119/502 (23%), Positives = 221/502 (44%), Gaps = 70/502 (13%)

Query: 43  DVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP 102
           D  +V RSC++I+  +++H+ L+     +D  + TQ+       GDL  +    +     
Sbjct: 53  DFNLVFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRK 112

Query: 103 EIKIWNSIIENQLING------------------------YPQEVFAIY----------- 127
            I  WNS++   +  G                        +P  + A             
Sbjct: 113 NIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCW 172

Query: 128 ---------LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
                    +Y+    + L ++ G ++   ++F  +P RDV SWN MIS +   G   E 
Sbjct: 173 VLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEA 232

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
           L +L +M  E V  D VT+ S++    +  D+  G  +HL++ +  ++    + N L++M
Sbjct: 233 LRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINM 292

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297
           Y K G++ +AQ++    E+   D+V W ++++ Y ++++   A   F EM+   +    L
Sbjct: 293 YSKFGRLQDAQRVFDGMEVR--DLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLL 350

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------IELAYDL 346
            +  +    + F   S   IG   HG  V     +  I I N           I+ A  +
Sbjct: 351 TVVSLA---SIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAV 407

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPDQVTFIALLSACSHGGL 405
           F ++  ++V  W ++I  YA  G A +AID +  MEE  T  P+Q T++++L A SH G 
Sbjct: 408 FEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGA 467

Query: 406 VDEGYDF---LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           + +G      L K     ++        C++D+ G+ G LE++ +    +P    V  W+
Sbjct: 468 LQQGMKIHGRLIKNCLFLDVFVAT----CLIDMYGKCGRLEDAMSLFYEIPQETSVP-WN 522

Query: 463 SLLRACRCHQNVKLAEHAFKHL 484
           +++ +   H + + A   FK +
Sbjct: 523 AIISSLGIHGHGEKALQLFKDM 544



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 109/485 (22%), Positives = 199/485 (41%), Gaps = 43/485 (8%)

Query: 115 LINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
           L+ G  Q+V    + L     L    G L      F  +  +++ SWN+M+S Y   G Y
Sbjct: 75  LVLGKAQDV----VLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRY 130

Query: 175 REGLGLLSK-MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY 233
           R+ +  +++ +   GV PD  T   ++ A   L D   G+ +H ++ +   +    +   
Sbjct: 131 RDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAAS 187

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           L+ +Y + G +  A K+    ++   DV  W  ++SG+ ++    EA R+ D M    + 
Sbjct: 188 LIHLYSRFGAVEVAHKVF--VDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVK 245

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--------------- 338
             T+ +S ML          CA    +  G+ VH+Y+ K+ +  D               
Sbjct: 246 MDTVTVSSML--------PICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFG 297

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            ++ A  +F  +  +++  W S+IAAY        A+  F EM   G +PD +T ++L S
Sbjct: 298 RLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLAS 357

Query: 399 ACSHGGLVDE--GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
               G L D   G        R   ++  +     +V++  + G ++ +      +P   
Sbjct: 358 I--FGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLP-SR 414

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYAKAGRLDDMSRI 514
           DV  W++L+     +     A  A+  + E   +  N G  V +   Y+  G L    +I
Sbjct: 415 DVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKI 474

Query: 515 RMKL--RDMGLKKQLGYSLIEQGGFVHKFTSG-DIFNPHSEEIYLMLNEIEMTLQQQGLQ 571
             +L    + L   +   LI+  G   +      +F    +E  +  N I  +L   G  
Sbjct: 475 HGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHG 534

Query: 572 ETSLQ 576
           E +LQ
Sbjct: 535 EKALQ 539


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 195/670 (29%), Positives = 344/670 (51%), Gaps = 89/670 (13%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           + E +R+H +++      +  +   +       G +  A  +  +  EP++  WNS+I  
Sbjct: 211 VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMING 270

Query: 114 QLINGYPQEVFAIYLYLVTRTV-------------------------------------- 135
            ++NG+      I++ ++   V                                      
Sbjct: 271 CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEE 330

Query: 136 ---------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                    + +KCG L    ++F K+ +  ++SW ++I+ Y   G+Y + +GL  +M +
Sbjct: 331 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQS 390

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           +GV PD  T+ S++ A      L+ G+++H ++ ++ M  +  + N L++MY KCG + E
Sbjct: 391 KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEE 450

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+ +  +  +   D+V W T++ GY ++   +EA  LF +M ++      + ++ +L   
Sbjct: 451 ARLVFSKIPVK--DIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVL--- 504

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +CA + AL  G  +H +I +     D                + LA  LF  I 
Sbjct: 505 -----PACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP 559

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +K++  WT +IA Y M G   +AI  F EM   G +PD+ +F A+L+ACSH GL++EG+ 
Sbjct: 560 KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWK 619

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           F +       ++PK++HY C+VDLL R G+L ++  FI SMPI PD +IW  LL  CR H
Sbjct: 620 FFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIH 679

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
            +VKLAE   +H+ E +P N   +V+LAN+YA+A + +++ ++R +++  G K+  G S 
Sbjct: 680 HDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSW 739

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------LQETSLQ------ 576
           IE GG  + F +G+  +P +++I ++L+++ M +Q +          + E  ++      
Sbjct: 740 IEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQC 799

Query: 577 -HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+ A+AFG+++     T+R+  N R+CGDCH   K  S+    EIV+RD+ RFH F+
Sbjct: 800 GHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFK 859

Query: 636 GGQCSCRDYW 645
            G CSCRD +
Sbjct: 860 DGLCSCRDAF 869



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 223/512 (43%), Gaps = 108/512 (21%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           S+++ +R+HS +I+  +  D  +  ++    V  GDL   ++I  +    ++ +WN ++ 
Sbjct: 109 SLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMS 168

Query: 113 NQLINGYPQEVFAIYLYLVTRTVLLN--------KC----GKLKEVCQ------------ 148
                G  +E  +++  +    V+ N        KC    GK+KE C+            
Sbjct: 169 EYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE-CKRVHGYVLKLGFG 227

Query: 149 ------------------------LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
                                   LFD+L   DV+SWN+MI+     G    GL +  +M
Sbjct: 228 SNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQM 287

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
              GV  D  T+VS++ A   + +L +G+ LH F  ++         N L+DMY KCG +
Sbjct: 288 LILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNL 347

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
             A ++    ++ +  +V WT++++ YV+     +A  LFDEM  + +      ++ +++
Sbjct: 348 NGATEVF--VKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVH 405

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSE 349
                   +CA   +L  G  VH Y+ KN +  +               ++E A  +FS+
Sbjct: 406 --------ACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSK 457

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-------- 401
           I  K++  W ++I  Y+      +A++LFL+M++   KPD +T   +L AC+        
Sbjct: 458 IPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKG 516

Query: 402 ---HGGLVDEGY-----------DFLSK------KSRVYNIKPK--MQHYGCMVDLLGRA 439
              HG ++  GY           D  +K         ++++ PK  +  +  M+   G  
Sbjct: 517 REIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMH 576

Query: 440 GHLEESANFITSMPIP---PDVSIWSSLLRAC 468
           G   E+ +    M I    PD S +S++L AC
Sbjct: 577 GFGNEAISTFNEMRIAGIEPDESSFSAILNAC 608



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N  I+ +  MG  R  + LL+K  +  +  +    V  + A  K   LE GK +H  +  
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKK--SLEDGKRVHSVIIS 122

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           + + +  +L   LV MY  CG + + +K+  +   D+  V LW  L+S Y K     E+ 
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK--VFLWNLLMSEYAKIGNFRESV 180

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEF-KYKSCASIGALYHGIWVHVYIKKNQISIDN- 339
            LF +M +  ++      + +L   A   K K C  +    HG  + +    N   +++ 
Sbjct: 181 SLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV----HGYVLKLGFGSNTAVVNSL 236

Query: 340 ---------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                    +E A++LF E+SE +V  W S+I    + G +   +++F++M   G + D 
Sbjct: 237 IAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDL 296

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGCMVDLLGRAGHLEESA 446
            T +++L AC++ G +      L +    + +K     ++     ++D+  + G+L  + 
Sbjct: 297 TTLVSVLVACANIGNLS-----LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGAT 351

Query: 447 NFITSMPIPPDVSIWSSLLRA 467
                M     VS W+S++ A
Sbjct: 352 EVFVKMGDTTIVS-WTSIIAA 371


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 208/590 (35%), Positives = 310/590 (52%), Gaps = 63/590 (10%)

Query: 114 QLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173
           +L +  P+    I+  L+T  V   + G L    ++ D +  +  I+WN MIS Y   G+
Sbjct: 213 KLFDEMPKRNEFIWTTLITGYV---RNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGL 269

Query: 174 YREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-- 231
           + + L L  KM   GV  DE T  S+ISA        +GK +H ++ ++ +      L  
Sbjct: 270 FEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLS 329

Query: 232 --NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
             N L+ +Y+K GK+  A+K+   YE+   D++ W TL+SGYV +   +EA+  F +M E
Sbjct: 330 VGNTLITLYWKYGKVDGARKIF--YEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPE 387

Query: 290 RNLISWTLMISGM------------LNQ---------DAEFK--YKSCASIGALYHGIWV 326
           +NL++WT+MISG+             NQ         D  F     +C+ +GAL +G  +
Sbjct: 388 KNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQL 447

Query: 327 HVYI----KKNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H  I      + +S+ N           +E A  +F  +   +   W S+IAA    GH 
Sbjct: 448 HAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHG 507

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
            KAI+L+ +M + G  PD+ TF+ +LSACSH GLV+EG  + +     Y I P   HY  
Sbjct: 508 VKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYAR 567

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           M+DL  RAG   ++ N I SMP      IW +LL  CR H N+ L   A + L +  P +
Sbjct: 568 MIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQH 627

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
           DG +VLL+N+YA  GR +D++R R  +RD G+KK+   S  E    VH F   D  +P  
Sbjct: 628 DGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEV 687

Query: 552 EEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTT 595
             IY  L ++ + +++ G                +E +L  H E+LAVAFGL+   +  T
Sbjct: 688 LSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGAT 747

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +R+  NLRICGDCH+ +K  S+V  REIV+RD  RFH F+ G+CSCR+YW
Sbjct: 748 VRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 123/529 (23%), Positives = 215/529 (40%), Gaps = 124/529 (23%)

Query: 31  SRKFANV---CPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG 87
           +R FA +   CP +L    + R+         +H H+I +       I  ++ +    + 
Sbjct: 12  NRYFAQLNLCCPQNLSSYSLART---------VHGHVIASGFKLRGHIVNRLIDIYWKSS 62

Query: 88  DLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC 147
           D  YA+++  +  +P++     I    LI  Y                  +  G LK   
Sbjct: 63  DFVYARKLFDEIPQPDV-----IARTTLITAY------------------SALGNLKMAR 99

Query: 148 QLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
           ++F++ P   RD + +N MI+ Y+ M      + L   M      PD+ T  S++SA T 
Sbjct: 100 EIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTL 159

Query: 206 L-RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG---------KIGEAQKLLGRYE 255
           +  D      +H  + +  ++I  ++LN L+ +Y KC           +  A+KL    E
Sbjct: 160 IFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFD--E 217

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDA---- 307
           + + +  +WTTL++GYV++ +   AR + D M E+  I+W  MISG L+    +DA    
Sbjct: 218 MPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLF 277

Query: 308 -----------EFKYKS----CASIGALYHGIWVHVYIKKNQISID-------------- 338
                      E  Y S    CA  G    G  VH YI KN+++ D              
Sbjct: 278 RKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITL 337

Query: 339 ------------------------------------NIELAYDLFSEISEKNVYLWTSVI 362
                                                +E A   F+++ EKN+  WT +I
Sbjct: 338 YWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMI 397

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           +  A  G  ++A+ LF +M+  G +P+   F   ++ACS  G ++ G    ++   + + 
Sbjct: 398 SGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGH- 456

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
              +     M+ +  R G +E +     +MP    VS W+S++ A   H
Sbjct: 457 DSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVS-WNSMIAALGQH 504


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 181/470 (38%), Positives = 269/470 (57%), Gaps = 60/470 (12%)

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
            N ++  Y   G +G AQ+L  R  +     V WT++V+G+ ++ + + ARR+F+EM ER
Sbjct: 80  FNSMIHGYAVSGDVGSAQRLFER--VLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPER 137

Query: 291 NLISWTLMISGMLNQDAE------FKY-----------------KSCASIGALYHGIWVH 327
           +L+SW  MISG +           F++                  +C   GAL  G WVH
Sbjct: 138 DLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVH 197

Query: 328 VYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
           V+++K ++  D                +ELA ++F+ +  +N   W ++I   AM G++ 
Sbjct: 198 VFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSA 257

Query: 373 KAIDLFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
           KA+D+F +ME  GT  PD+VTF+ +L ACSH G VD G +      + Y ++  ++HY C
Sbjct: 258 KALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYAC 317

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           MVDLL R+GHL+E+   IT MP+ PDV +W +LL  CR H+NVK+AE+    ++E +   
Sbjct: 318 MVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENV---ISEMEATC 374

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
            G HVLL+N+YA  GR + +  +R  +R  G++K  G S +E  G +H+F SGD  +P  
Sbjct: 375 SGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSY 434

Query: 552 EEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTT 595
           ++I+  L EI   +QQ G                +E +L  H E+LA+AFGLI    + T
Sbjct: 435 DDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEAT 494

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IRIV NLR C DCHSF K+ S++Y+REIV+RD  RFH F+GG CSC D+W
Sbjct: 495 IRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 52/316 (16%)

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145
           +GD+G AQ++  +   P    W S++                           + G ++ 
Sbjct: 90  SGDVGSAQRLFERVLAPTPVTWTSMVAG-----------------------FCRAGDVES 126

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
             ++F+++P RD++SWN MIS      +  E L L   M  EG  P+  T+VS++SA T 
Sbjct: 127 ARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTG 186

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
              LE GK +H+F+E+  ++    L   LVDMY KCG +  A ++     +   +   W 
Sbjct: 187 AGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVF--TGLRARNTCTWN 244

Query: 266 TLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324
            +++G   +    +A  +F +M +   +    +   G+L         +C+  G +  G 
Sbjct: 245 AMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVL--------LACSHAGFVDAGK 296

Query: 325 WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
             H Y    +  ++ I   Y    ++               A +GH Q+A  L  EM   
Sbjct: 297 -EHFYTIPQKYGVELILEHYACMVDL--------------LARSGHLQEAHKLITEMP-- 339

Query: 385 GTKPDQVTFIALLSAC 400
             KPD V + ALL  C
Sbjct: 340 -MKPDVVVWRALLGGC 354



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 60/264 (22%)

Query: 57  FERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLI 116
           FER+        L   P   T +       GD+  A+++  +  E ++  WN++I   + 
Sbjct: 100 FERV--------LAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVG 151

Query: 117 NGYPQEVFAIYLYLVTRTVLLN-------------------------------------- 138
           N  P E   ++ +++    + N                                      
Sbjct: 152 NRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFL 211

Query: 139 ---------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG- 188
                    KCG ++   ++F  L  R+  +WN MI+     G   + L +  +M   G 
Sbjct: 212 GTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGT 271

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGE 246
           V+PDEVT V ++ A +    ++ GK  H +       +   L +Y  +VD+  + G + E
Sbjct: 272 VAPDEVTFVGVLLACSHAGFVDAGKE-HFYTIPQKYGVELILEHYACMVDLLARSGHLQE 330

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSG 270
           A KL+    + + DVV+W  L+ G
Sbjct: 331 AHKLITEMPM-KPDVVVWRALLGG 353



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-MLNQDAEFKYKSCASIGALYHGI 324
             + GY  +    +ARR+FD M  R+ +S+  MI G  ++ D     +    + A     
Sbjct: 51  AFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPVT 110

Query: 325 WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
           W  +          ++E A  +F E+ E+++  W ++I+         +A+ LF  M E 
Sbjct: 111 WTSMV--AGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEE 168

Query: 385 GTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYG-CMVDLLGRAG 440
           G  P++ T +++LSAC+  G ++ G   + F+ KK   ++     +  G  +VD+  + G
Sbjct: 169 GFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWD-----EFLGTALVDMYAKCG 223

Query: 441 HLEESANFITSMPIPPDVSIWSSLL 465
            +E +    T +    +   W++++
Sbjct: 224 AVELALEVFTGLR-ARNTCTWNAMI 247


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/616 (31%), Positives = 320/616 (51%), Gaps = 73/616 (11%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLI-NGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQL 149
            +I     PE+      I  +++ NG+  +       LV  T L+N   KCG   E  ++
Sbjct: 212 NVISGFSTPEVLPEGRKIHAEIVANGFDTD-------LVVATALINMYGKCGSSHEAREV 264

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FDK+  RD++SWN MI CY   G + E L L  K+  EG    + T VS++ A + ++ L
Sbjct: 265 FDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
             G+ +H  + E  +    ++   LV+MY KCG + EA+K+     +   D V W+TL+ 
Sbjct: 325 AQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFN--AMKNRDAVAWSTLIG 382

Query: 270 GYVKSN---ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK---------------- 310
            Y  +    +  +AR++FD +  R+ ISW  MI+  +                       
Sbjct: 383 AYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKP 442

Query: 311 --------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLF 347
                    ++CAS+G L     +H  I ++++  +               ++E A  LF
Sbjct: 443 DAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLF 502

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
           +   EK V  WT+++AA++  G   +A+DLF EM+  G KPD VT+ ++L  C+HGG ++
Sbjct: 503 AAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLE 562

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           +G+ + +  + ++ + P   H+  MVDLLGR+G L ++   + SMP  PD   W + L A
Sbjct: 563 QGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTA 622

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H  ++L E A + + E DP +   ++ ++NIYA  G  + ++ +R K+ + GLKK  
Sbjct: 623 CRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLP 682

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETS----- 574
           G S IE  G +H+F+SG  ++P ++EI   L  +   ++  G        L + S     
Sbjct: 683 GLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKE 742

Query: 575 ---LQHRERLAVAFGLIST-SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
              L H E++A+AFGL+S+      IR+V NLR+C DCH+  K  +++  R+I++RD  R
Sbjct: 743 TMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNR 802

Query: 631 FHRFQG-GQCSCRDYW 645
           FHRF   G+CSC DYW
Sbjct: 803 FHRFSSDGKCSCGDYW 818



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 167/379 (44%), Gaps = 42/379 (11%)

Query: 136 LLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           +  KC  L +   +F+ +    R+V+SWN MI+ Y   G   E L L  +M  +G+  D 
Sbjct: 51  MYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDH 110

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           VT VS++ A      L  G+ +H  +  S +    SL N LV MY + G +G+A+++   
Sbjct: 111 VTFVSVLGA---CSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMF-- 165

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM---VERNLISWTLMISGMLNQDAEFK 310
             +   D   W  ++  + +S +   A R+F EM   V+ N  ++  +ISG    +    
Sbjct: 166 QSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPE---- 221

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNV 355
                    L  G  +H  I  N    D +                 A ++F ++ ++++
Sbjct: 222 --------VLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDM 273

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W  +I  Y + G   +A++L+ +++  G K  + TF+++L ACS    + +G   +  
Sbjct: 274 VSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR-LVHS 332

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH---Q 472
                 +  ++     +V++  + G LEE+     +M    D   WS+L+ A   +   +
Sbjct: 333 HILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGAYASNGYGK 391

Query: 473 NVKLAEHAFKHLTETDPLN 491
           + + A   F  L   D ++
Sbjct: 392 DARKARKVFDRLGSRDTIS 410



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 108/524 (20%), Positives = 200/524 (38%), Gaps = 113/524 (21%)

Query: 42  LDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD- 100
           L V+    SC  + E   +H  +  +   RD  +   +         L  A+ +    D 
Sbjct: 11  LTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDW 70

Query: 101 -EPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---------- 140
            +  +  WN++I     NG+  E   +Y  +         VT   +L  C          
Sbjct: 71  RQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGREIH 130

Query: 141 -------------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
                                    G + +  ++F  L  RD  SWN +I  ++  G + 
Sbjct: 131 NRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWS 190

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
             L +  +M  + V P+  T +++IS  +    L  G+ +H  +  +       +   L+
Sbjct: 191 GALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALI 249

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           +MY KCG   EA+++  +  + + D+V W  ++  YV + +  EA  L+ +         
Sbjct: 250 NMYGKCGSSHEAREVFDK--MKKRDMVSWNVMIGCYVLNGDFHEALELYQK--------- 298

Query: 296 TLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISID--------------- 338
            L + G     A F     +C+S+ AL  G  VH +I +  +  +               
Sbjct: 299 -LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCG 357

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGH---------------------------- 370
           ++E A  +F+ +  ++   W+++I AYA  G+                            
Sbjct: 358 SLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITT 417

Query: 371 ------AQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
                 A  A+ +F EM    G KPD VTFIA+L AC+  G + E     ++ S    ++
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISES-ELE 476

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
             +     ++++  R G LEE+     +      VS W++++ A
Sbjct: 477 SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVS-WTAMVAA 519



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 104/233 (44%), Gaps = 25/233 (10%)

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD VT ++++ + +   D+  G+ LH  +  S  +    + N L+ MY KC  + +A+ +
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF- 309
               +  + +VV W  +++ Y ++    EA  L+          W + + G+      F 
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY----------WRMNLQGLGTDHVTFV 114

Query: 310 -KYKSCASIG--------ALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVY 356
               +C+S+           Y G+     +    +++     ++  A  +F  +  ++  
Sbjct: 115 SVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDET 174

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
            W +VI A++ +G    A+ +F EM +   KP+  T+I ++S  S   ++ EG
Sbjct: 175 SWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEG 226


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 209/652 (32%), Positives = 326/652 (50%), Gaps = 90/652 (13%)

Query: 51   CSSIDE----FERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
            C  +D+    +ER+    + T         T +       G +  A+ I  +   P +  
Sbjct: 440  CGRLDDAIQLYERVPEQTVATK--------TAMMTAYAQVGRIQKARLIFDEILNPNVVA 491

Query: 107  WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
            WN+II      GY Q                   G LKE   LF K+P ++  SW  MI+
Sbjct: 492  WNAIIA-----GYTQN------------------GMLKEAKDLFQKMPVKNSASWAAMIA 528

Query: 167  CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
             +      RE L LL ++   G  P + +  S +SA   + D+E+G+ +H    ++  + 
Sbjct: 529  GFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQF 588

Query: 227  SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
            +  ++N L+ MY KCG + +   +     +   D V W +L+SG  ++   D+AR +F++
Sbjct: 589  NSYVMNGLISMYAKCGNVEDGSHVFRTIRVK--DTVSWNSLISGLSENYMLDDARVVFEK 646

Query: 287  MVERNLISWTLMISG----------------MLNQDAEFK-------YKSCASIGALYHG 323
            M +R+++SWT +IS                 ML +  +           +C ++GA+  G
Sbjct: 647  MPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG 706

Query: 324  IWVHVYIKK----------NQISIDNIELAYD----LFSEISEKNVYLWTSVIAAYAMAG 369
               H  I K          N +     +  Y+    +F E+ E ++  W +V+   A  G
Sbjct: 707  EQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFCVFEEMPEHDLITWNAVLVGCAQNG 766

Query: 370  HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
              ++AI +F +ME  G  PDQ++F+ +L ACSH GLVDEG+   +  ++ Y I P + HY
Sbjct: 767  LGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHY 826

Query: 430  GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
             CMVDLLGRAG+L E+   I +MP+ PD  IW +LL ACR H+NV+L +   + L +   
Sbjct: 827  TCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTK 886

Query: 490  LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
                 +VLL+N++A  G  D ++ IR  ++D GL K+ G S I+    +H F +GD  + 
Sbjct: 887  PKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHD 946

Query: 550  HSEEIYLMLNE----------------IEMTLQQQGLQETSLQHRERLAVAFGLISTSEK 593
              EEIY  L E                +   ++++  Q   L H E+LAV FG++ST   
Sbjct: 947  QIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNG 1006

Query: 594  TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            + I+I+ NLRICGDCH+FMK  S+V  R+I+IRD  RFH F+ G CSC DYW
Sbjct: 1007 SPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 179/458 (39%), Gaps = 152/458 (33%)

Query: 84  VFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKL 143
           V  GDL  A+++  +  E  +  WNS++      GY                    C ++
Sbjct: 275 VQNGDLKNARKLFDEMPEKNVASWNSVV-----TGYCH------------------CYRM 311

Query: 144 KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
            E  +LFD++P R+ +SW  MIS Y  +  Y E   +  KM      PD+   V ++SA 
Sbjct: 312 SEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI 371

Query: 204 TKLRDLEMGKNLHLFL----EESTMKISGSLLNY-------------------------- 233
           T L DLE+  +L         E  + +  ++LN                           
Sbjct: 372 TGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWT 431

Query: 234 -LVDMYFKCGKIGEAQKL---------------------LGRYE-----IDEV---DVVL 263
            ++  + +CG++ +A +L                     +GR +      DE+   +VV 
Sbjct: 432 TMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVA 491

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ------------------ 305
           W  +++GY ++    EA+ LF +M  +N  SW  MI+G +                    
Sbjct: 492 WNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGS 551

Query: 306 ---DAEF--KYKSCASIG-----------ALYHGIWVHVYIKKNQISI----DNIELAYD 345
              D+ F     +CA+IG           A+  G   + Y+    IS+     N+E    
Sbjct: 552 VPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSH 611

Query: 346 LFSEI-------------------------------SEKNVYLWTSVIAAYAMAGHAQKA 374
           +F  I                                +++V  WT++I+AY  AGH + A
Sbjct: 612 VFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVA 671

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           +DLFL+M   G KP+Q+T  +LLSAC + G +  G  F
Sbjct: 672 LDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQF 709



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 164/379 (43%), Gaps = 109/379 (28%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           TR   L + G+++E  ++F+++  RDV+SWN+MI+ Y+  G                   
Sbjct: 176 TRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNG-----------------KV 218

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           DE  +         L D  +GKN+  +    T+ ++G         Y K G+I EA+++ 
Sbjct: 219 DEARL---------LFDAFVGKNIRTW----TILLTG---------YAKEGRIEEAREVF 256

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
               + E +VV W  ++SGYV++ +   AR+LFDEM E+N+ SW  +++G          
Sbjct: 257 --ESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTG---------- 304

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
                        + H Y          +  A +LF ++ E+N   W  +I+ Y      
Sbjct: 305 -------------YCHCY---------RMSEARELFDQMPERNSVSWMVMISGYVHISDY 342

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
            +A D+F++M  T  +PDQ  F+ +LSA +       G D L     +  I  K  + G 
Sbjct: 343 WEAWDVFVKMCRTVARPDQSIFVVVLSAIT-------GLDDLELIGSLRPIAIKTGYEG- 394

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
                                    DV + S++L A   + ++ LA H F+ + E    N
Sbjct: 395 -------------------------DVVVGSAILNAYTRNGSLDLAMHFFETMPER---N 426

Query: 492 DGAHVLLANIYAKAGRLDD 510
           + +   +   +A+ GRLDD
Sbjct: 427 EYSWTTMIAAFAQCGRLDD 445


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 222/705 (31%), Positives = 336/705 (47%), Gaps = 174/705 (24%)

Query: 32  RKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DL 89
           R FAN   +SL        CS   + ++IH+ ++ T L  DP  ++++      +    L
Sbjct: 31  RYFANHPTLSLI-----DQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSL 85

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT--------------- 134
            YAQQ+  Q   P +  WN++I     +  P +   I+L ++ ++               
Sbjct: 86  DYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKA 145

Query: 135 -------------------VLLN--------------KCGKLKEVCQLFDKLPNRDVISW 161
                              VLL               KCG+L    ++F  +P RDV+SW
Sbjct: 146 ASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSW 205

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N+MI+ +   G   E L L  +M  +                                  
Sbjct: 206 NSMITAFVQGGCPEEALELFQEMETQN--------------------------------- 232

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
                S +L N ++DMY KCG + +A++L  +  + E D+V WTT++ GY K  E D A+
Sbjct: 233 -----SLTLSNAMLDMYTKCGSVEDAKRLFDK--MPEKDIVSWTTMLVGYAKIGEYDAAQ 285

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA---LYHGIWVHVYIKKNQISID 338
            +FD M  +++ +W  +IS          Y+ C        L+H + +    K +++++ 
Sbjct: 286 GIFDAMPNQDIAAWNALISA---------YEQCGKPKEALELFHELQLSKTAKPDEVTLK 336

Query: 339 ---------------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
                                +++ A  +F  +  K+V++W+++IA  AM GH + AI L
Sbjct: 337 QGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIAL 396

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M+E   KP+ VTF  +L ACSH GLV+EG  F ++   VY                 
Sbjct: 397 FSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG---------------- 440

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
                         MP+ P  S+W +LL AC  H+NV LAE A   L E +P N GA+VL
Sbjct: 441 -------------KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVL 487

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           L+NIYAKAG+ D +S +R  +RD+GLKK+ G S IE  G VH+F  GD  +P +++IY  
Sbjct: 488 LSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAK 547

Query: 558 LNEIEMTLQQQG----------------LQETSL-QHRERLAVAFGLISTSEKTTIRIVN 600
           L+EI   L+  G                ++E +L  H E+LA+AFGLIST +   IRIV 
Sbjct: 548 LDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVK 607

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+CGDCHS  K+ S++Y+REI++RD  RFH F+ G CSC DYW
Sbjct: 608 NLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 652


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 196/572 (34%), Positives = 315/572 (55%), Gaps = 50/572 (8%)

Query: 113 NQLINGYPQEVFAIYLYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMI 165
           ++L NG     +AI   L T   + N       KCG ++   ++F+ +  RD ISW T++
Sbjct: 381 SRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTIL 440

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           +C+     + E L ++ ++  EG+  D + + S++     L+ + + K +H +   + + 
Sbjct: 441 ACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL- 499

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           +   L N L+D+Y +CG+   +  L  R  +++ D+V WT++++    +   + A  LF 
Sbjct: 500 LDLILENRLIDIYGECGEFDHSLNLFQR--VEKKDIVSWTSMINCCTNNGRLNGAVFLFT 557

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------- 338
           EM + N+   ++ +  +L         + A + +L  G  VH ++ +    I+       
Sbjct: 558 EMQKANIQPDSVALVSIL--------VAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSL 609

Query: 339 --------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                   ++  A  +F     K+V LWT++I A  M GH ++AIDLF  M +TG  PD 
Sbjct: 610 VDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDH 669

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           V+F+ALL ACSH  LV+EG  +L      Y +KP  +HY C+VD+LGR+G  EE+  FI 
Sbjct: 670 VSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIK 729

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
           +MP+ P  ++W +LL ACR H+N  LA  A   L E +P N G ++L++N++A+ G+ ++
Sbjct: 730 TMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNN 789

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG- 569
               R ++ + GL+K    S IE G  +H FTSGD  +  SE I+L L+EI   L+++G 
Sbjct: 790 AKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGG 849

Query: 570 --------LQETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
                   L +TS +        H ER+A+AFGLIST     IRI  NLR+CGDCH F K
Sbjct: 850 YVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTK 909

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + S+++ R+IV+RD  RFH F GG CSC D+W
Sbjct: 910 LVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 168/371 (45%), Gaps = 55/371 (14%)

Query: 129 YLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL---GLLSKM 184
           +L T+ V +  +CG++ +  +LF+ +P R V SWN ++  Y S G   E +   G +   
Sbjct: 96  FLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRAS 155

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
            A G +PD  T+ S++ A     D   G  +H    +  +  S  + N L+ MY KCG +
Sbjct: 156 AAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLL 215

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
             A ++    + D  DV  W ++VSG V++    EA  LF  M                 
Sbjct: 216 DSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGM----------------- 258

Query: 305 QDAEFKYKS---------CASIGALYHGIWVHVYIKK--NQISID------------NIE 341
           Q A F   S         CA +G L  G  +H  + K  ++++I              ++
Sbjct: 259 QSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVD 318

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  +F +I+EK+   W S+++ Y       +AID F EM + G +PD    ++L SA  
Sbjct: 319 SALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALG 378

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           H   ++ G +F       Y IK +    +Q    ++D+  + G +E SA    SM I   
Sbjct: 379 HLSRLNNGREF-----HAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDH 433

Query: 458 VSIWSSLLRAC 468
           +S W+++L AC
Sbjct: 434 IS-WTTIL-AC 442



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 174/390 (44%), Gaps = 41/390 (10%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
           V+  K G++    ++F ++  +D ISWN+M+SCY     Y E +    +M   G  PD  
Sbjct: 309 VMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHA 368

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            +VSL SA   L  L  G+  H +  +  +     + N L+DMY KCG I  + K+    
Sbjct: 369 CVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESM 428

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            I   D + WTT+++ + +S+   EA  +  E+ +  ++  ++MI  +L        ++C
Sbjct: 429 GIR--DHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSIL--------ETC 478

Query: 315 ASIGALYHGIWVHVYIKKNQI--------------SIDNIELAYDLFSEISEKNVYLWTS 360
             + ++     VH Y  +N +                   + + +LF  + +K++  WTS
Sbjct: 479 CGLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTS 538

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I      G    A+ LF EM++   +PD V  +++L A +       G   L+K  +V+
Sbjct: 539 MINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIA-------GLSSLTKGKQVH 591

Query: 421 ------NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
                 N   +      +VD+    G +  +           DV +W++++ A   H + 
Sbjct: 592 GFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKC-KDVVLWTAMINATGMHGHG 650

Query: 475 KLAEHAFKHLTETDPLNDGAHV-LLANIYA 503
           K A   FK + +T    D  HV  LA +YA
Sbjct: 651 KQAIDLFKRMLQTGLTPD--HVSFLALLYA 678


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 196/614 (31%), Positives = 324/614 (52%), Gaps = 55/614 (8%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           R+H+H   +N +    IS ++ +     G L  AQ +  +    ++  WN+     +I G
Sbjct: 108 RVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNT-----MIVG 162

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           Y                   K G+L++  +LFD++P RD  SWN  IS Y +    RE L
Sbjct: 163 YA------------------KLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREAL 204

Query: 179 GLLSKMGA-EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
            L   M   E  S ++ T+ S ++A   +  L +GK +H +L  + + +   + + L+D+
Sbjct: 205 ELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDL 264

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297
           Y KCG + EA+ +    ++ + DVV WTT++    +   R+E   LF ++++  +     
Sbjct: 265 YGKCGSLDEARGIFD--QMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEY 322

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----------NIELAYDLF 347
             +G+LN  A+    +   +G   HG  +H        +I           N  +A  +F
Sbjct: 323 TFAGVLNACAD---HAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVF 379

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
           +E+ + ++  WTS+I  YA  G   +A+  F  + ++GTKPDQVT++ +LSAC+H GLVD
Sbjct: 380 NEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVD 439

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           +G ++       + +     HY C++DLL R+G  +E+ N I +MP+ PD  +W+SLL  
Sbjct: 440 KGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGG 499

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H N++LA+ A K L E +P N   ++ LANIYA AG   +++ +R  + +MG+ K+ 
Sbjct: 500 CRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKP 559

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
           G S IE    VH F  GD  +P + +I+  L E+   ++++G                 +
Sbjct: 560 GKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKE 619

Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
           +  + H E+LAV FG+IST   T I++  NLR C DCH+ +K  S++  R+I +RD+ RF
Sbjct: 620 QNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRF 679

Query: 632 HRFQGGQCSCRDYW 645
           H F+ G CSC+DYW
Sbjct: 680 HCFEDGSCSCKDYW 693



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 145/325 (44%), Gaps = 65/325 (20%)

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           P      +LI+A  + R LE+G+ +H   + S       + N L+DMY KCG + +AQ L
Sbjct: 85  PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML--NQDAE 308
               E+   D+  W T++ GY K    ++AR+LFDEM +R+  SW   ISG +  NQ  E
Sbjct: 145 FD--EMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPRE 202

Query: 309 F--------KYKSCAS--------------IGALYHGIWVHVYIKKNQISIDNI------ 340
                    +++  +S              I  L  G  +H Y+ + ++++D +      
Sbjct: 203 ALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALL 262

Query: 341 ---------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                    + A  +F ++ +++V  WT++I      G  ++   LF ++ ++G +P++ 
Sbjct: 263 DLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEY 322

Query: 392 TFIALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           TF  +L+AC+           HG ++  GYD            P       +V +  + G
Sbjct: 323 TFAGVLNACADHAAEHLGKEVHGYMMHAGYD------------PGSFAISALVHMYSKCG 370

Query: 441 HLEESANFITSMPIPPDVSIWSSLL 465
           +   +      M   PD+  W+SL+
Sbjct: 371 NTRVARRVFNEMH-QPDLVSWTSLI 394


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 195/616 (31%), Positives = 319/616 (51%), Gaps = 73/616 (11%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLI-NGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQL 149
            +I     PE+      I  +++ NG+  +       LV  T L+N   KCG   E  ++
Sbjct: 212 NVISGFSTPEVLPEGRKIHAEIVANGFDSD-------LVVATALINMYGKCGSSHEAREV 264

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FDK+  RD++SWN MI CY   G + E L L  K+  EG    + T VS++ A + ++ L
Sbjct: 265 FDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
             G+ +H  + E  +    ++   LV+MY KCG + EA+K+     +   D V W+TL+ 
Sbjct: 325 AQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFN--AMKNRDAVAWSTLIG 382

Query: 270 GYVKSN---ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK---------------- 310
            Y  +    +  +AR++FD +  R+ I W  MI+  +                       
Sbjct: 383 AYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKP 442

Query: 311 --------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLF 347
                    ++CAS+G L     +H  I ++++  +               ++E A  LF
Sbjct: 443 DAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLF 502

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
           +   EK V  WT+++AA++  G   +A+DLF EM+  G KPD VT+ ++L  C+HGG ++
Sbjct: 503 AAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLE 562

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           +G+ + +  + ++ + P   H+  MVDLLGR+G L ++   + SMP  PD   W + L A
Sbjct: 563 QGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTA 622

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H  ++L E A + + E DP +   ++ ++NIYA  G  + ++ +R K+ + GLKK  
Sbjct: 623 CRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLP 682

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETS----- 574
           G S IE  G +H+F+SG  ++P ++EI   L  +   ++  G        L + S     
Sbjct: 683 GLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKE 742

Query: 575 ---LQHRERLAVAFGLIST-SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
              L H E++A+AFGL+S+      IR+V NLR+C DCH+  K  +++  R+I++RD  R
Sbjct: 743 TMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNR 802

Query: 631 FHRFQG-GQCSCRDYW 645
           FHRF   G+CSC DYW
Sbjct: 803 FHRFSSDGKCSCGDYW 818



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 165/378 (43%), Gaps = 42/378 (11%)

Query: 136 LLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           +  KC  L +   +F+ +    R+V+SWN MI+ Y   G   E L L  +M  +G+  D 
Sbjct: 51  MYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDH 110

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           VT VS++ A      L  G+ +H  +  S +    SL N LV MY + G +G+A+++   
Sbjct: 111 VTFVSVLGA---CSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMF-- 165

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM---VERNLISWTLMISGMLNQDAEFK 310
             +   D   W  ++  + +S +   A R+F EM   ++ N  ++  +ISG    +    
Sbjct: 166 QSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPE---- 221

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNV 355
                    L  G  +H  I  N    D +                 A ++F ++ ++++
Sbjct: 222 --------VLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDM 273

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W  +I  Y   G   +A++L+ +++  G K  + TF+++L ACS    + +G   +  
Sbjct: 274 VSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR-LVHS 332

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH---Q 472
                 +  ++     +V++  + G LEE+     +M    D   WS+L+ A   +   +
Sbjct: 333 HILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGAYASNGYGK 391

Query: 473 NVKLAEHAFKHLTETDPL 490
           + + A   F  L   D +
Sbjct: 392 DARKARKVFDRLGSRDTI 409



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 107/524 (20%), Positives = 201/524 (38%), Gaps = 113/524 (21%)

Query: 42  LDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD- 100
           L V+    SC  + E   +H  +  +   RD  +   +         L  A+ +    D 
Sbjct: 11  LTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDW 70

Query: 101 -EPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---------- 140
            +  +  WN++I     NG+  E   +Y  +         VT   +L  C          
Sbjct: 71  RQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGREIH 130

Query: 141 -------------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
                                    G + +  ++F  L  RD  SWN +I  ++  G + 
Sbjct: 131 NRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWS 190

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
             L +  +M  + + P+  T +++IS  +    L  G+ +H  +  +       +   L+
Sbjct: 191 GALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALI 249

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           +MY KCG   EA+++  +  + + D+V W  ++  YV++ +  EA  L+ +         
Sbjct: 250 NMYGKCGSSHEAREVFDK--MKKRDMVSWNVMIGCYVQNGDFHEALELYQK--------- 298

Query: 296 TLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISID--------------- 338
            L + G     A F     +C+S+ AL  G  VH +I +  +  +               
Sbjct: 299 -LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCG 357

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGH---------------------------- 370
           ++E A  +F+ +  ++   W+++I AYA  G+                            
Sbjct: 358 SLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITT 417

Query: 371 ------AQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
                 A  A+ +F EM    G KPD VTFIA+L AC+  G + E     ++ S    ++
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISES-ELE 476

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
             +     ++++  R G LEE+     +      VS W++++ A
Sbjct: 477 SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVS-WTAMVAA 519



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 76/380 (20%), Positives = 153/380 (40%), Gaps = 61/380 (16%)

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD VT ++++ + +   D+  G+ LH  +  S  +    + N L+ MY KC  + +A+ +
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF- 309
               +  + +VV W  +++ Y ++    EA  L+          W + + G+      F 
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY----------WRMNLQGLGTDHVTFV 114

Query: 310 -KYKSCASIG--------ALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVY 356
               +C+S+           Y G+     +    +++     ++  A  +F  +  ++  
Sbjct: 115 SVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDET 174

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGL 405
            W +VI A++ +G    A+ +F EM +   KP+  T+I ++S  S           H  +
Sbjct: 175 SWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEI 233

Query: 406 VDEGYDF-LSKKSRVYNI------------------KPKMQHYGCMVDLLGRAGHLEESA 446
           V  G+D  L   + + N+                  K  M  +  M+    + G   E+ 
Sbjct: 234 VANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEAL 293

Query: 447 NFITSMPIPP---DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA-HVLLANIY 502
                + +       + + S+L AC   + +        H+ E    ++ A    L N+Y
Sbjct: 294 ELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMY 353

Query: 503 AKAGRLDDMSRI--RMKLRD 520
           AK G L++  ++   MK RD
Sbjct: 354 AKCGSLEEARKVFNAMKNRD 373


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 203/678 (29%), Positives = 349/678 (51%), Gaps = 68/678 (10%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQ 78
           +GL  +M +S     + P    +  +  +C+ + +  R   IH +LI      DP  +  
Sbjct: 243 VGLFYEMVLS----GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANA 298

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY----------- 127
           + +     GDL  A  +  +  +P+I  WN++I   +++ + ++   +            
Sbjct: 299 LVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSL 358

Query: 128 --------LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                   L++    V + +KC  L++    F+ LP +D+I+WN +IS Y+      E L
Sbjct: 359 MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEAL 418

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
            L  +M  EG+  ++ T+ +++ +   L+ + + + +H    +S       ++N L+D Y
Sbjct: 419 SLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSY 478

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KC  + +A+++     I   D+V +T++++ Y +  + +EA +LF EM +  L     +
Sbjct: 479 GKCSHVEDAERIFEECTIG--DLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFV 536

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELA 343
            S +LN        +CA++ A   G  +HV+I K    +D               +I+ A
Sbjct: 537 CSSLLN--------ACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA 588

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
              FSE++E+ +  W+++I   A  GH ++A+ LF +M + G  P+ +T +++L AC+H 
Sbjct: 589 GRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHA 648

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GLV E   +      ++  KP  +HY CM+DLLGRAG + E+   +  MP   + S+W +
Sbjct: 649 GLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGA 708

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL A R H++V+L   A + L   +P   G HVLLANIYA AG+ ++++ +R  +RD  +
Sbjct: 709 LLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKV 768

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---LQETSL----- 575
           KK+ G S IE    V+ F  GD  +  S+EIY  L+E+   + + G   + E  L     
Sbjct: 769 KKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQ 828

Query: 576 --------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
                    H E+LAVAFGLI+T +   IR+  NLR+C DCH+  K   ++ +REI++RD
Sbjct: 829 SEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRD 888

Query: 628 NGRFHRFQGGQCSCRDYW 645
             RFH F+ G CSC DYW
Sbjct: 889 INRFHHFKDGSCSCGDYW 906



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 141/613 (23%), Positives = 243/613 (39%), Gaps = 141/613 (23%)

Query: 8   PQLTETIFEPKLVR-LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFE---RIHSH 63
           PQ +E   +P+    L L+ K        N  P S+    +   C +        +IH+H
Sbjct: 32  PQFSE---DPQTTAILNLIDK-------GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAH 81

Query: 64  LITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII----ENQL---- 115
           +  + L  DP I   +          GYA++++ +  EP++  W+++I    +N L    
Sbjct: 82  ITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGA 141

Query: 116 -------------------------------------------INGYPQEVFAIYLYLVT 132
                                                      ++G+  +VF       T
Sbjct: 142 LMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN----T 197

Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
             V+  KC +  +  +LFD++P R+V+SWN + SCY       E +GL  +M   G+ P+
Sbjct: 198 LVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPN 257

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           E ++ S+++A T LRD   GK +H +L +          N LVDMY K G + +A  +  
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
           +  I + D+V W  +++G V     ++A  L  +M  +       + S ++  D E    
Sbjct: 318 K--IKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ-------LHSSLMKMDME---- 364

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
                      ++V V +       D +E A   F+ + EK++  W ++I+ Y+      
Sbjct: 365 ---------SDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDM 415

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDFLSKKSRVYN 421
           +A+ LF+EM + G   +Q T   +L + +           HG  V  G+      S +Y 
Sbjct: 416 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGF-----HSDIYV 470

Query: 422 IKPKMQHYG------------------------CMVDLLGRAGHLEESANF---ITSMPI 454
           +   +  YG                         M+    + G  EE+      +  M +
Sbjct: 471 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 530

Query: 455 PPDVSIWSSLLRAC----RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            PD  + SSLL AC       Q  +L  H  K+    D     +   L N+YAK G +DD
Sbjct: 531 KPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS---LVNMYAKCGSIDD 587

Query: 511 MSRIRMKLRDMGL 523
             R   +L + G+
Sbjct: 588 AGRAFSELTERGI 600


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 288/552 (52%), Gaps = 57/552 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD     D   WN MI  ++        L L  +M       +  T  SL+ A + L  
Sbjct: 100 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSA 159

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           LE    +H  + +   +     +N L++ Y   G    A  L  R  I + D V W +++
Sbjct: 160 LEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDR--IPKPDAVSWNSVI 217

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQDAEF--- 309
            GY K+ + D A  LF +MVE+N ISWT MISG                M N D E    
Sbjct: 218 KGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNV 277

Query: 310 ----KYKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEI 350
                  +CA +GAL  G W+H Y+ K +I +D++                 A ++F  I
Sbjct: 278 SLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNI 337

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
             K+V  WT++I+ YA  GH ++AI  F+EM++ G KP+ +TF  +L+ACS+ GLV+EG 
Sbjct: 338 QRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGK 397

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
                  R YN+KP ++HYGC+VDLL RAG L+E+  FI  MP+ P+  IW +LL+ACR 
Sbjct: 398 LIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRI 457

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           H+N++L E   + L   DP + G +V  ANI+A   + D  +  R  +++ G+ K  G S
Sbjct: 458 HKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCS 517

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQETS 574
            I   G  H+F +GD  +P  E+I      +   L++ G                 +ET 
Sbjct: 518 TISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETI 577

Query: 575 L-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
           + QH E+LA+ +GLI T   TTIRI+ NLR+C DCH   K+ S++Y R+IV+RD  RFH 
Sbjct: 578 VHQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHH 637

Query: 634 FQGGQCSCRDYW 645
           F+ G+CSC DYW
Sbjct: 638 FRDGKCSCGDYW 649



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 156/353 (44%), Gaps = 59/353 (16%)

Query: 52  SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII 111
           S+++E  +IH+ +       D      +      TG+   A  +  +  +P+   WNS+I
Sbjct: 158 SALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVI 217

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
           +     GY                   K GK+     LF K+  ++ ISW TMIS Y   
Sbjct: 218 K-----GYA------------------KAGKMDIALTLFRKMVEKNAISWTTMISGYVQA 254

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           GM++E L L  +M    V PD V++ + +SA  +L  LE GK +H +L ++ +++   L 
Sbjct: 255 GMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLG 314

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM---- 287
             L+DMY KCG +GEA ++     I    V  WT L+SGY       EA   F EM    
Sbjct: 315 CVLIDMYAKCGDMGEALEVFK--NIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMG 372

Query: 288 VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLF 347
           ++ N+I++T +++            +C+  G +  G          ++   N+E  Y+L 
Sbjct: 373 IKPNVITFTTVLT------------ACSYTGLVEEG----------KLIFYNMERDYNLK 410

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
             I       +  V+   + AG   +A     EM     KP+ V + ALL AC
Sbjct: 411 PTIEH-----YGCVVDLLSRAGLLDEAKRFIQEMP---LKPNAVIWGALLKAC 455


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 212/652 (32%), Positives = 334/652 (51%), Gaps = 84/652 (12%)

Query: 12  ETIFEPKLV------RLGLVPKMRISRKFANVCPVSLDVI-------MVERSCS---SID 55
           ETI EP L+      R   +    +S     VC +SL ++        + +SC+   +  
Sbjct: 49  ETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFK 108

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           E ++IH H++      D  + T +    V  G L  A ++  +    ++  + ++I+   
Sbjct: 109 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYA 168

Query: 116 INGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
             GY                       ++   ++FD++P +DV+SWN MIS Y   G Y+
Sbjct: 169 SRGY-----------------------IENAQKMFDEIPVKDVVSWNAMISGYAETGNYK 205

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           E L L   M    V PDE TMV+++SA  +   +E+G+ +H ++++     +  ++N L+
Sbjct: 206 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALI 265

Query: 236 DMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           D+Y KCG   E +   G +E +   DV+ W TL+ GY   N   EA  LF EM+      
Sbjct: 266 DLYSKCG---ELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 322

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN--------------- 339
             + +  +L         +CA +GA+  G W+HVYI K    + N               
Sbjct: 323 NDVTMLSIL--------PACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKC 374

Query: 340 --IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             IE A+ +F+ I  K++  W ++I  +AM G A  + D+F  M + G +PD +TF+ LL
Sbjct: 375 GDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLL 434

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           SACSH G++D G       ++ Y + PK++HYGCM+DLLG +G  +E+   I +M + PD
Sbjct: 435 SACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPD 494

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             IW SLL+AC+ H NV+L E   ++L + +P N G++VLL+NIYA AGR ++++  R  
Sbjct: 495 GVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRAL 554

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML----------------NEI 561
           L D G+KK  G S IE    VH+F  GD F+P + EIY ML                +E+
Sbjct: 555 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEV 614

Query: 562 EMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
              ++++  +     H E+LA+AFGLIST   T + IV NLR+C +CH   K
Sbjct: 615 LQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 206/579 (35%), Positives = 322/579 (55%), Gaps = 83/579 (14%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMI--------SCYTSMGMYR---EGLGLLSKMG 185
           L  C  L    +LFD++P  D+  +NTMI        SC+ S+ ++R   + LGL     
Sbjct: 57  LAACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLF---- 112

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
                P+  + V   SA      ++ G+ + +   +  ++ +  ++N L+ MY K G +G
Sbjct: 113 -----PNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVG 167

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN- 304
           E+QK+  ++ +D  D+  W TL++ YV S     A+ LFD M ER+++SW+ +I+G +  
Sbjct: 168 ESQKVF-QWAVDR-DLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQV 225

Query: 305 ----QDAEFKYK------------------SCASIGALYHGIWVHVYIKKNQISIDNIEL 342
               +  +F +K                  +C+++ AL  G W+H YI K +I ++   L
Sbjct: 226 GCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLL 285

Query: 343 A--YDLFSEISE--------------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
           A   D++++  E              + V+LW ++I  +AM G   +AI++F +M+    
Sbjct: 286 ASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKI 345

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
            P++VTFIALL+ACSHG +V+EG  +       Y I P+++HYGCMVDLL R+G L+E+ 
Sbjct: 346 SPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAE 405

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
           + I+SMP+ PDV+IW +LL ACR +++++      + +   DP + G HVLL+NIY+ +G
Sbjct: 406 DMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSG 465

Query: 507 RLDDMSRIRMK---LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
           R ++   +R K    RD   KK  G S IE  G  H+F  GD  +P S EIY  L+E+  
Sbjct: 466 RWNEARILREKNEISRDR--KKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTT 523

Query: 564 TLQQQGL----------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICG 606
            L+  G                 +ET+L  H E+LA+AFGL++T+  T IRIV NLR+CG
Sbjct: 524 KLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCG 583

Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           DCH   K  S+VYNR I++RD  R+H F+ G CSC+DYW
Sbjct: 584 DCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 106/239 (44%), Gaps = 25/239 (10%)

Query: 39  PVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P    ++    +CS   ++D+ + IH+++    +  + ++   + +     G++  A ++
Sbjct: 245 PNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRV 304

Query: 96  IRQGD-EPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC--GKL 143
             +   + ++ +WN++I    ++G P E   ++  +         VT   LLN C  G +
Sbjct: 305 FFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYM 364

Query: 144 KEVCQLFDKLPNRD------VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            E  +L+ +L   D      +  +  M+   +  G+ +E   ++S M    ++PD     
Sbjct: 365 VEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSM---PMAPDVAIWG 421

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           +L++A    +D+E G  +   ++       G  +  L ++Y   G+  EA+ L  + EI
Sbjct: 422 ALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHV-LLSNIYSTSGRWNEARILREKNEI 479


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 186/501 (37%), Positives = 284/501 (56%), Gaps = 45/501 (8%)

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
           N+++ N L  G+  +VF +   +      L  C  + E  +LFD    RD++SWNT+I  
Sbjct: 140 NAVLGNVLSLGFHADVFVVNAAMH----FLAVCSSMAEARKLFDGSHVRDLVSWNTLIGG 195

Query: 168 YTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
           Y   G+ RE L +  +M  +G V+PDEVTM+ ++S   +LRDLE+G+ LH ++E   ++ 
Sbjct: 196 YVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRC 255

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           +  L+N ++DMY KCG +  A+ +     ID+  +V WTT++ GY +    D+AR++FDE
Sbjct: 256 TVRLMNVVMDMYIKCGDLERAKSVF--EGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDE 313

Query: 287 MVERNLISWTLMISGMLN--------------QDAEFK---------YKSCASIGALYHG 323
           M ER++  W  +++G +               Q+A  +           +C+ +GAL  G
Sbjct: 314 MPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMG 373

Query: 324 IWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
           +WVH YI + ++S+                NIE A  +F EI EKN   WT++I+  A  
Sbjct: 374 MWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANH 433

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           GHA  AI  F  M E G +PD++TFI +LSAC H GLV EG +F S     Y+++ KM+H
Sbjct: 434 GHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKH 493

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           Y CMVDLLGRAG+L+E+ + + +MP+ PD  +W +L  ACR H N+ L E A   L E D
Sbjct: 494 YSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELD 553

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           P + G +VLLAN+YA+A       ++R+ +R +G++K  G S IE  G VH+F   D  +
Sbjct: 554 PGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSH 613

Query: 549 PHSEEIYLMLNEIEMTLQQQG 569
                IY  L+EI + ++   
Sbjct: 614 TDIAAIYDCLHEITLQIEHTA 634


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/568 (34%), Positives = 307/568 (54%), Gaps = 66/568 (11%)

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR-------EGLGLLSKMGAEG-VSPDE 193
           ++K   + F ++ + +  SWNT+I                 E L   S M  +G V P++
Sbjct: 64  EIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNK 123

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T   ++ A  KL  +E GK LH F+ +  +     + + LV +Y  CG + +A  L  +
Sbjct: 124 FTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQ 183

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--- 310
             + E +VVLW  ++ GYV+  +   +R LFD M  ++++SW +MISG   Q+  FK   
Sbjct: 184 TRL-EGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISG-CAQNGHFKEAI 241

Query: 311 ---------------------YKSCASIGALYHGIWVHVYIKKNQISIDN---------- 339
                                  + + +GA+  G WVH++ +KN+I ID+          
Sbjct: 242 EMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMY 301

Query: 340 -----IELAYDLFSEI-SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                I+ A  +F  I ++KN   W+++I   AM G A+ A+D F  M++ G  P  V +
Sbjct: 302 SKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVY 361

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           I +LSACSH GLV+EG         +  + P+++HYGCMVDLLGRAG LEE+   I +MP
Sbjct: 362 IGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMP 421

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           + PD  I  +LL AC+ H N+++ E   K L    P + G++V L+N++A  G  + + +
Sbjct: 422 VKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVK 481

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQET 573
           +R+K++++ ++K  G S IE  G +H+F   D  +P +E I+ ML E+   L+  G +  
Sbjct: 482 VRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPN 541

Query: 574 SLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
           + Q                H E++A+AFGLIST  +T ++IV NLR+C DCHS +K+ S+
Sbjct: 542 TTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSK 601

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +YNR+I++RD  RFH F+ G CSC DYW
Sbjct: 602 IYNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 165/367 (44%), Gaps = 54/367 (14%)

Query: 47  VERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD-EP 102
           V ++C+    I+E +++H  ++   L+ D  + + +    V  G +  A  +  Q   E 
Sbjct: 129 VLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEG 188

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWN 162
            + +WN      +I+GY                   + G L+   +LFD +PN+ V+SWN
Sbjct: 189 NVVLWNV-----MIDGYV------------------RMGDLRASRELFDSMPNKSVVSWN 225

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
            MIS     G ++E + +   M    V P+ VT+VS++ A ++L  +E+GK +HLF E++
Sbjct: 226 VMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKN 285

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            ++I   L + L+DMY KCG I +A ++      ++ + + W+ ++ G        +A  
Sbjct: 286 EIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIR-NKKNPITWSAIIGGLAMHGRARDALD 344

Query: 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL 342
            F  M +  +    ++  G+L+        +C+  G +  G  ++ ++      +  IE 
Sbjct: 345 HFWRMQQAGVTPSDVVYIGVLS--------ACSHAGLVEEGRSIYYHMVNIVGLLPRIE- 395

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
                          +  ++     AG  ++A  L L M     KPD V   ALL AC  
Sbjct: 396 --------------HYGCMVDLLGRAGCLEEAEQLILNMP---VKPDDVILKALLGACKM 438

Query: 403 GGLVDEG 409
            G ++ G
Sbjct: 439 HGNIEMG 445


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 301/541 (55%), Gaps = 50/541 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYT-SMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           G + +  ++FD++P  +V+SW  +I+ Y  S G  RE + L  +M    V P+  T  S+
Sbjct: 197 GSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSV 256

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A   L D+ +G+ ++  + +  +     + N L+ MY +CG +  A+K      + E 
Sbjct: 257 LKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDV--LFEK 314

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCA 315
           ++V + T+V+ Y KS   +EA  LF+E+       N  ++  ++SG             +
Sbjct: 315 NLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGA------------S 362

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           SIGA+  G  +H  I K+    +               NIE A+ +F+E+ + NV  WTS
Sbjct: 363 SIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTS 422

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I  +A  G A +A++ F +M E G  P++VT+IA+LSACSH GL+ EG          +
Sbjct: 423 MITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEH 482

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I P+M+HY C+VDLLGR+GHLEE+   + SMP   D  +  + L ACR H N+ L +HA
Sbjct: 483 GIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHA 542

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + + E DP +  A++LL+N++A AG+ ++++ IR K+++  L K+ G S IE    VHK
Sbjct: 543 AEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHK 602

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVA 584
           F  GD  +P ++EIY  L+++ + +++ G                 ++   QH E++AVA
Sbjct: 603 FYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVA 662

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           +G ISTS    IR+  NLR+CGDCH+  K  S V  +EIV+RD  RFH F+ G CSC DY
Sbjct: 663 YGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDY 722

Query: 645 W 645
           W
Sbjct: 723 W 723



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 178/366 (48%), Gaps = 31/366 (8%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L+   ++FD++P+R+V++W  MI+ +  +G  R+ + L   M   G  PD  T+  ++
Sbjct: 93  GDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV 152

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC---GKIGEAQKLLGRYEID 257
           SA  ++  L +G+  H  + +S + +   +   LVDMY KC   G + +A+K+  R  + 
Sbjct: 153 SACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH 212

Query: 258 EVDVVLWTTLVSGYVKSNERD-EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
             +V+ WT +++GYV+S   D EA  LF EMV+  +       S +L        K+CA+
Sbjct: 213 --NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVL--------KACAN 262

Query: 317 IGALYHGIWVHVYIKKNQIS---------------IDNIELAYDLFSEISEKNVYLWTSV 361
           +  ++ G  V+  + K +++                 N+E A   F  + EKN+  + ++
Sbjct: 263 LSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTI 322

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           + AYA + ++++A +LF E+E  GT  +  TF +LLS  S  G + +G    S+  +   
Sbjct: 323 VNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-G 381

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            K  +     ++ +  R G++E +      M    +V  W+S++     H     A   F
Sbjct: 382 FKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHGFATRALETF 440

Query: 482 KHLTET 487
             + E 
Sbjct: 441 HKMLEA 446



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 146/315 (46%), Gaps = 40/315 (12%)

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RD++SW+ +ISCY +     E +     M   G  P+E     +  A +   ++ +GK +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 216 HLFLEESTMKISGSLLN-YLVDMYFKC-GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
             FL ++    S   +   L+DM+ K  G +  A K+  R  + + +VV WT +++ + +
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDR--MPDRNVVTWTLMITRFQQ 122

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
                +A  LF +MV    +     +SG+++        +CA +G L  G   H  + K+
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVS--------ACAEMGLLSLGRQFHCLVMKS 174

Query: 334 QISID------------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK-A 374
            + +D                  +++ A  +F  +   NV  WT++I  Y  +G   + A
Sbjct: 175 GLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREA 234

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC--- 431
           I+LFLEM +   KP+  TF ++L AC++  L D    +L ++     +K ++    C   
Sbjct: 235 IELFLEMVQGQVKPNHFTFSSVLKACAN--LSD---IWLGEQVYALVVKMRLASINCVGN 289

Query: 432 -MVDLLGRAGHLEES 445
            ++ +  R G++E +
Sbjct: 290 SLISMYSRCGNMENA 304


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 202/632 (31%), Positives = 325/632 (51%), Gaps = 72/632 (11%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           R+C ++    ++H+   T+    D   +  +       GDL  A+++  +     +  WN
Sbjct: 114 RACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWN 173

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
                 L  GY +                   G L    +LFD++P R+V +WN M++  
Sbjct: 174 I-----LFGGYIKN------------------GDLGGARKLFDEMPERNVATWNAMVAGL 210

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           T++G   E LG    M  EG+ PDE  + S+      LRD+  G+ +H ++  S +    
Sbjct: 211 TNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDM 270

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM- 287
            + + L  MY +CG + E + +L    +  + +V   T+++G  ++ + + A   F  M 
Sbjct: 271 CVGSSLAHMYMRCGCLQEGEAVL--RMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMR 328

Query: 288 ---VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS--IDNIEL 342
              V  +++++   IS            SC+ + AL  G  +H  + K  +   +  +  
Sbjct: 329 SVGVAADVVTFVSAIS------------SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTC 376

Query: 343 AYDLFSEI-----SEK--------NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
              ++S       SE+        + +L +++I+AY   GH QKAI+LF +M   G +P 
Sbjct: 377 LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPS 436

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            VTF+ALL ACSH GL +EG D     ++ Y ++P ++HY C+VDLLGR+G L+E+   I
Sbjct: 437 DVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALI 496

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
            SMP+ PD  IW +LL AC+  +N  +AE   K + E DP +  ++VLL+NI A + R  
Sbjct: 497 LSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWG 556

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           D+S +R  +RD  ++K+ G S +E  G +H+F +GD  +P  +EI   L E+   ++Q G
Sbjct: 557 DVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCG 616

Query: 570 L---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
                           +E SL  H E+LA+AF  +S  E   IR++ NLR+C DCH  +K
Sbjct: 617 YSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIK 676

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + SQV  REIV+RD  RFH F+ G+CSCRDYW
Sbjct: 677 LMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 186/545 (34%), Positives = 297/545 (54%), Gaps = 41/545 (7%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           TR+V          V ++F+ +P +D++SWNT+I+     G+Y E L ++ +MG   + P
Sbjct: 178 TRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKP 237

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T+ S++    +  D+  GK +H       +     + + L+DMY KC ++ ++ ++ 
Sbjct: 238 DSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF 297

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
               + E D + W ++++G V++   DE  R F +M+   +   +   S ++        
Sbjct: 298 TL--LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIM-------- 347

Query: 312 KSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVY 356
            +CA +  L+ G  +H YI +N                    NI  A  +F  +  +++ 
Sbjct: 348 PACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMV 407

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            WT++I   A+ G A  AI+LF +ME  G KP+ V F+A+L+ACSHGGLVDE + + +  
Sbjct: 408 SWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSM 467

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           +R + I P ++HY  + DLLGRAG LEE+ +FI  M I P  SIW++LL ACR H N+ +
Sbjct: 468 TRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDM 527

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
           AE     + E DP N GA++LLANIY+ A R  + ++ R  +R +G++K    S IE   
Sbjct: 528 AEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKN 587

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRER 580
            V+ F +GD  +P  E+I   +  +   ++++G + +TS                 H ER
Sbjct: 588 KVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSER 647

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+ FG+I+T    TIR+  NLR+C DCH+  K  S++  REIV+RDN RFH F+ G CS
Sbjct: 648 LAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCS 707

Query: 641 CRDYW 645
           C DYW
Sbjct: 708 CGDYW 712



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 180/426 (42%), Gaps = 53/426 (12%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L +  +LF+ +     ++W ++I CYTS G+  + LG    M A G+ PD     S++ +
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA-QKLLGRYEI----- 256
              L DL +G++LH ++    +       N L++MY K   + E+ ++ LG  E+     
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMT 175

Query: 257 ------------------------DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
                                    E D+V W T+++G  ++   +E  R+  EM   NL
Sbjct: 176 ERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANL 235

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH------VYIKKNQISI----DNIEL 342
              +  +S +L   AE       S G   HG  +       +Y+  + I +      +  
Sbjct: 236 KPDSFTLSSVLPLIAE---NVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVAD 292

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           +  +F+ ++E++   W S+IA     G   + +  F +M     KP   +F +++ AC+H
Sbjct: 293 SCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAH 352

Query: 403 GGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
              +  G   + ++++     NI         +VD+  + G++  +      M +   VS
Sbjct: 353 LTTLHLGKQLHGYITRNGFDENIFIA----SSLVDMYAKCGNIRTAKQIFDRMRLRDMVS 408

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHL-TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            W++++  C  H     A   F+ + TE    N  A + +    +  G +D+  +    +
Sbjct: 409 -WTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSM 467

Query: 519 -RDMGL 523
            RD G+
Sbjct: 468 TRDFGI 473


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 305/564 (54%), Gaps = 61/564 (10%)

Query: 138 NKCGKL-KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           N C  L KE+ +  D+  N  ++++N MIS Y + G+Y+E L ++ +M + G+  DE T 
Sbjct: 232 NGCFDLGKELLKGMDE--NMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTY 289

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            S+I A    R L++GK +H ++       S    N LV +Y+KCGK  EA+ +  +  +
Sbjct: 290 PSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEK--M 346

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----------- 305
              D+V W  L+SGYV S    EA+ +F EM E+N++SW +MISG+              
Sbjct: 347 PAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFS 406

Query: 306 ----------DAEFK--YKSCASIGALYHGIWVHVYIKK----NQISIDN---------- 339
                     D  F    KSCA +GA  +G   H  + K    + +S  N          
Sbjct: 407 CMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCG 466

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +E A  +F  +   +   W ++IAA    GH  +A+D++ EM + G +PD++TF+ +L+
Sbjct: 467 VVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLT 526

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACSH GLVD+G  + +    VY I P   HY  ++DLL R+G   E+ + I S+P  P  
Sbjct: 527 ACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTA 586

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            IW +LL  CR H N++L   A   L    P +DG ++LL+N+YA  G+ ++++R+R  +
Sbjct: 587 EIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLM 646

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL-- 575
           RD G+KK++  S IE    VH F   D  +P +E +Y  L ++   +++ G + +TS   
Sbjct: 647 RDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVL 706

Query: 576 --------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                          H E++AVAFGL+     TTIRI  NLR CGDCH+F +  S+V  R
Sbjct: 707 HDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQR 766

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           +I++RD  RFH F+ G+CSC ++W
Sbjct: 767 DIILRDRKRFHHFRNGECSCGNFW 790



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 114/522 (21%), Positives = 204/522 (39%), Gaps = 104/522 (19%)

Query: 26  PKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF 85
           P   + R  AN    +L + +  R  +S+     +H ++IT        I  ++ +    
Sbjct: 3   PNPDLVRAIANRYAANLRLCLPLRR-TSLQLARAVHGNIITFGFQPHAHILNRLIDVYCK 61

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145
           + +L YA+Q+  +  EP+      I    +++GY                     G +  
Sbjct: 62  SSELDYARQLFDEISEPD-----KIARTTMVSGYCAS------------------GDIAL 98

Query: 146 VCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
              +F++ P   RD + +N MI+ ++        + L  KM  EG  PD+ T  S+++  
Sbjct: 99  ARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGL 158

Query: 204 TKLRDLE-MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK----IGEAQKLLGRYEIDE 258
             + D E      H    +S      S+ N LV +Y +C      +  A+K+    +I E
Sbjct: 159 ALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFD--DIPE 216

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLN----QDA------ 307
            D   WTT+++GYVK+   D  + L   M E   L+++  MISG +N    Q+A      
Sbjct: 217 KDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRR 276

Query: 308 ---------EFKY----KSCASIGALYHGIWVHVYIKKNQ-------------------- 334
                    EF Y    ++CA+   L  G  VH Y+ + +                    
Sbjct: 277 MVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKF 336

Query: 335 -------------------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
                                    +S  +I  A  +F E+ EKN+  W  +I+  A  G
Sbjct: 337 NEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENG 396

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
             ++ + LF  M+  G +P    F   + +C+  G    G  F ++  ++      +   
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKI-GFDSSLSAG 455

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
             ++ +  + G +EE+     +MP    VS W++L+ A   H
Sbjct: 456 NALITMYAKCGVVEEAQQVFRTMPCLDSVS-WNALIAALGQH 496


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 199/537 (37%), Positives = 302/537 (56%), Gaps = 52/537 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L E  +LF++LP RDV +W  M+S +   GM  E   +  +M  +    +EV+  ++I
Sbjct: 260 GLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK----NEVSWNAMI 315

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           +   + + +E  K   LF +  +   S    N +V  Y +CG I +A+ L    E+ + D
Sbjct: 316 AGYVQSQQIE--KARELFDQMPSRNTSS--WNTMVTGYAQCGNIDQAKILFD--EMPQRD 369

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA-EFKYKSCASIGA 319
            + W  ++SGY +S + +EA  LF +M +R+         G+LN+ A      SCA I A
Sbjct: 370 CISWAAMISGYAQSGQSEEALHLFIKM-KRD--------GGILNRSALACALSSCAEIAA 420

Query: 320 LYHGIWVHV----------YIKKNQI-----SIDNIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H           YI  N +        +IE A+D+F +I+EK++  W ++IA 
Sbjct: 421 LELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAG 480

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           YA  G  ++A+ LF  M+ T  KPD VT + +LSACSH GLVD+G ++ +   + Y I  
Sbjct: 481 YARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITA 539

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
             +HY CM+DLLGRAG L+E+ N + SMP  PD + W +LL A R H + +L E A + +
Sbjct: 540 NAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKV 599

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P N G +VLL+N+YA +GR  ++  +R K+RD G+KK  GYS +E     H FT G
Sbjct: 600 FEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVG 659

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLI 588
           D  +P +E IY  L E+++ L++ G                +E  L+ H E+LAVAFG++
Sbjct: 660 DCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGIL 719

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S      IR++ NLR+C DCH+ +K  S++  R+I++RD+ RFH F  G CSC DYW
Sbjct: 720 SIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 192/446 (43%), Gaps = 73/446 (16%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L++  V+L+   K G L     LF+++P +DV+SWN M+S +   G   E   +  +M  
Sbjct: 122 LISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM-- 179

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLH----------------LFLEESTMKISGSL 230
             +  +E++   L+SA  +   +E  + L                  ++ +  +  + SL
Sbjct: 180 --LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSL 237

Query: 231 L-----------NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
                       N ++  Y + G + EA++L     I   DV  WT +VSG+V++   DE
Sbjct: 238 FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR--DVFAWTAMVSGFVQNGMLDE 295

Query: 280 ARRLFDEMVERNLISWTLMISGML-NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID 338
           A R+F+EM E+N +SW  MI+G + +Q  E   +    + +     W  +     Q    
Sbjct: 296 ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG-- 353

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           NI+ A  LF E+ +++   W ++I+ YA +G +++A+ LF++M+  G   ++      LS
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 399 ACS-----------HGGLVDEGYD--------FLSKKSRVYNIKPKMQ-----------H 428
           +C+           HG LV  G+          L+   +  +I+                
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS 473

Query: 429 YGCMVDLLGRAGHLEESANFITSMP--IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +  M+    R G  +E+     SM   I PD      +L AC     V      F  + +
Sbjct: 474 WNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQ 533

Query: 487 TDPLNDGA--HVLLANIYAKAGRLDD 510
              +   A  +  + ++  +AGRLD+
Sbjct: 534 NYGITANAKHYTCMIDLLGRAGRLDE 559



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 168/376 (44%), Gaps = 37/376 (9%)

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
           + D++ WN  IS Y   G     L + + M         VT  ++IS        +  + 
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDCARK 112

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +   + +  + IS    N ++  Y K G +  A+ L    ++ E DVV W  ++SG+ ++
Sbjct: 113 VFEKMPDRDL-IS---WNVMLSGYVKNGNLSAARALFN--QMPEKDVVSWNAMLSGFAQN 166

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKSCASIGALYHGIWVHVYI 330
              +EAR++FD+M+ +N ISW  ++S  +     +DA   + S      +     +  Y+
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           +K +     ++ A  LF  +  ++   W  +I  YA  G   +A  LF E+       D 
Sbjct: 227 RKKR-----LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PIRDV 277

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH--YGCMVDLLGRAGHLEESANF 448
             + A++S     G++DE        +R++   P+     +  M+    ++  +E++   
Sbjct: 278 FAWTAMVSGFVQNGMLDEA-------TRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
              MP   + S W++++       N+  A+  F  + + D ++  A +   + YA++G+ 
Sbjct: 331 FDQMP-SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMI---SGYAQSGQS 386

Query: 509 DDMSRIRMKL-RDMGL 523
           ++   + +K+ RD G+
Sbjct: 387 EEALHLFIKMKRDGGI 402



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 134/285 (47%), Gaps = 27/285 (9%)

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD----AEFKY 311
           I + D+V W   +S Y++  + + A  +F+ M  R+ +++  MISG L+ +    A   +
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           +       +   + +  Y+K       N+  A  LF+++ EK+V  W ++++ +A  G  
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNG-----NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
           ++A  +F +M       +++++  LLSA    G +++       K     +  ++  + C
Sbjct: 170 EEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSK-----MDWEIVSWNC 220

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           ++    R   L+++ +    MP+   +S W+ ++      QN  L+E   + L E  P+ 
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKIS-WNIMITG--YAQNGLLSEA--RRLFEELPIR 275

Query: 492 D-GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           D  A   + + + + G LD+ +RI     +M  K ++ ++ +  G
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRI---FEEMPEKNEVSWNAMIAG 317


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 303/530 (57%), Gaps = 50/530 (9%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD +   +V  WN MI          + + L  +M      P++ T  +++ A +   
Sbjct: 113 RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAG 172

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            +  G  +H  L +  +   G +L+  + MY   G++ EA+++L   +  EVD V     
Sbjct: 173 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD-KGGEVDAVCMPDR 231

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
              ++      EA  +F +M +  +     ++  +L+        +CA++GAL  G W+H
Sbjct: 232 KGCFM------EALEIFHQMQKEKIRPRKFVLPSVLS--------ACANLGALDQGRWIH 277

Query: 328 VYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            Y K+N I +D                I+LA+++F ++S K V  W ++I   AM G A+
Sbjct: 278 TYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAE 337

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
            AIDLF +M+     P+++TF+ +L+AC+HGGLV +G    +   + Y ++P+++HYGC+
Sbjct: 338 DAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCI 394

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAG L E+   ++S+P  P  ++W +LL ACR H NV+L E   K L E +P N 
Sbjct: 395 VDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNS 454

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG-GFVHKFTSGDIFNPHS 551
           G + LL+NIYAKAGR +++  +R  +++ G+K   G S+I+ G G VHKF  GD  +P  
Sbjct: 455 GRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQV 514

Query: 552 EEIYLMLNEIEMTLQQQGLQ---------------ETSL-QHRERLAVAFGLISTSEKTT 595
           ++IY ML++++  LQ +G +               ET++ QH E+LA+ FGLI+TS  TT
Sbjct: 515 KDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTT 574

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IRIV NLR+C DCHS  K+ SQVYNREI++RD  R+H F+ G CSC+D+W
Sbjct: 575 IRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 192/556 (34%), Positives = 305/556 (54%), Gaps = 57/556 (10%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +V    LLN   KCG L+E  ++F+K+P RD ++W T+IS Y+      + L   ++M  
Sbjct: 95  IVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLR 154

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G SP+E T+ S+I A    R    G  LH F  +     +  + + L+D+Y + G + +
Sbjct: 155 FGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDD 214

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           AQ +     ++  + V W  L++G+ + +  ++A  LF  M+                + 
Sbjct: 215 AQLVFD--ALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF------------RP 260

Query: 307 AEFKYKS----CASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLF 347
           + F Y S    C+S G L  G WVH Y+ K+   +                +I  A  +F
Sbjct: 261 SHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIF 320

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             +++++V  W S++ AYA  G  ++A+  F EM   G +P++++F+++L+ACSH GL+D
Sbjct: 321 DRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLD 380

Query: 408 EGYDF--LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           EG+ +  L KK     I P+  HY  +VDLLGRAG L  +  FI  MPI P  +IW +LL
Sbjct: 381 EGWHYYELMKKD---GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            ACR H+N +L  +A +H+ E DP + G HV+L NIYA  GR +D +R+R K+++ G+KK
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
           +   S +E    +H F + D  +P  EEI     E+   +++ G                
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557

Query: 571 QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           +E +LQ H E++A+AF L++T   +TI I  N+R+CGDCH+ +K+ S+V  REI++RD  
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSC+DYW
Sbjct: 618 RFHHFKDGNCSCKDYW 633



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 31/291 (10%)

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +L+   T  + L  G+ +H  + +S  +    + N L++MY KCG + EA+K+  +  + 
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEK--MP 122

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           + D V WTTL+SGY + +   +A   F++M+          +S ++   A  +   C   
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCC--- 179

Query: 318 GALYHGIWV------HVYIKKNQISI-------DNIELAYDLFSEISEKNVYLWTSVIAA 364
           G   HG  V      +V++    + +       D+ +L +D    +  +N   W ++IA 
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFD---ALESRNDVSWNALIAG 236

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           +A     +KA++LF  M   G +P   ++ +L  ACS  G +++G     K    Y IK 
Sbjct: 237 HARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-----KWVHAYMIKS 291

Query: 425 --KMQHYG--CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
             K+  +    ++D+  ++G + ++      +    DV  W+SLL A   H
Sbjct: 292 GEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH 341


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/523 (36%), Positives = 293/523 (56%), Gaps = 28/523 (5%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD + NR+ +SWN+MI+ + + G+  E   L  +M  EGV   +    ++I     +++
Sbjct: 250 VFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKE 309

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           +   K LH  + ++      ++   L+  Y KC +I +A KL       + +VV WT ++
Sbjct: 310 MSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQ-NVVSWTAII 368

Query: 269 SGYVKSNERDEARRLFDEM-----VERNLISWTLMISGMLNQDAEF----KYKSCASIGA 319
           SGYV++   D A  LF +M     VE N  +++ +++      A      ++ SC+    
Sbjct: 369 SGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSG 428

Query: 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
             + + V   +        NIE A ++F    ++++  W S+I+ YA  G  +K++ +F 
Sbjct: 429 FSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFE 488

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
           EM     + D +TFI ++SAC+H GLV+EG  +     + Y+I P M+HY CMVDL  RA
Sbjct: 489 EMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRA 548

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499
           G LE++ + I  MP P   +IW +LL ACR H NV+L E A + L    P +  A+VLL+
Sbjct: 549 GMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLS 608

Query: 500 NIYAKAGRLDDMSRIRMKLRDM-GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
           NIYA AG   + +++R KL DM  +KK+ GYS IE       F +GD+ +P S+ IYL L
Sbjct: 609 NIYATAGNWQERAKVR-KLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKL 667

Query: 559 NEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNL 602
            E+ + L+  G                +E  L QH ERLA+AFGLI+T   T I+IV NL
Sbjct: 668 EELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNL 727

Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R+CGDCH+ +K+ S++  R+IV+RD+ RFH F+GG CSC DYW
Sbjct: 728 RVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 178/369 (48%), Gaps = 40/369 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD++  ++V+SW ++++ Y   G+  + L L S+M  EG+ P+  T  +++       
Sbjct: 148 RVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADG 207

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            +E G  +H  + +S +  +  + N +V+MY K   + +A+ +    E    + V W ++
Sbjct: 208 AVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME--NRNAVSWNSM 265

Query: 268 VSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           ++G+V +    EA  LF  M +E   ++ T+  + +         K CA+I  +     +
Sbjct: 266 IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVI---------KLCANIKEMSFAKQL 316

Query: 327 HVYIKKNQISID-NIE----LAYDLFSEISE-----------KNVYLWTSVIAAYAMAGH 370
           H  + KN    D NI+    +AY   SEI +           +NV  WT++I+ Y   G 
Sbjct: 317 HCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGR 376

Query: 371 AQKAIDLFLEM-EETGTKPDQVTFIALLSACSH-GGLVDEGYDFLSKKSRVYNIKPKMQH 428
             +A++LF +M  E G +P++ TF ++L+AC+     V++G  F S      +IK    +
Sbjct: 377 TDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHS-----CSIKSGFSN 431

Query: 429 YGC----MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
             C    +V +  + G++ ESAN +    +  D+  W+S++     H   K +   F+ +
Sbjct: 432 ALCVSSALVTMYAKRGNI-ESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEM 490

Query: 485 TETDPLNDG 493
              +   DG
Sbjct: 491 RSKNLELDG 499



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 122/314 (38%), Gaps = 82/314 (26%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           QLFD+ P + +   N ++  ++     +E L L   +   G   D  ++  ++     L 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D  +GK +H                       +C K G  +           DV + T+L
Sbjct: 107 DRIVGKQVHC----------------------QCIKCGFVE-----------DVSVGTSL 133

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA---------------E 308
           V  Y+K+   ++  R+FDEM  +N++SWT +++G     LN+ A                
Sbjct: 134 VDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNP 193

Query: 309 FKYKSC----ASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSE 349
           F + +     A+ GA+  G+ VH  + K    + I + N           +  A  +F  
Sbjct: 194 FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-------- 401
           +  +N   W S+IA +   G   +A +LF  M   G K  Q  F  ++  C+        
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 402 ---HGGLVDEGYDF 412
              H  ++  G DF
Sbjct: 314 KQLHCQVIKNGSDF 327



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G ++   ++F +  +RD++SWN+MIS Y   G  ++ L +  +M ++ +  D +T + 
Sbjct: 445 KRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIG 504

Query: 199 LISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +ISA T    +  G+    L +++  +  +    + +VD+Y + G + +A  L+ +    
Sbjct: 505 VISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPF- 563

Query: 258 EVDVVLWTTLVSG 270
                +W TL++ 
Sbjct: 564 PAGATIWRTLLAA 576


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 218/699 (31%), Positives = 346/699 (49%), Gaps = 83/699 (11%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQ 78
           LG+  +M++S     + P S+ +  +  +CS++ +  +   +HS+L+   +  D  +   
Sbjct: 229 LGIFDEMQLS----GLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGS 284

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWN----------------SIIENQLINGYPQE 122
           + +  V +GD+  A QI   GD   + +WN                 I    L  G    
Sbjct: 285 LLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPN 344

Query: 123 VFAIYLYLVTRT----------------------------VLLN---KCGKLKEVCQLFD 151
            F     L T T                            VL++   K G L +  ++ D
Sbjct: 345 KFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILD 404

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
            +  +DV+SW +MI+ Y      +E L    +M A G+ PD + + S ISA   ++ +  
Sbjct: 405 MIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQ 464

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSG 270
           G  +H  +  S      S+ N LV +Y +CG   EA      +E I+  + + W  L+SG
Sbjct: 465 GSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEA---FSSFEAIEHKEGITWNGLISG 521

Query: 271 YVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           + +S   +EA ++F +M     + N+ ++   IS   N  A+ K         +  G   
Sbjct: 522 FAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANL-ADIKQGKQIHARVIKTGYTS 580

Query: 327 HVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
              I    IS+     +IE A   F E++++N   W ++I   +  G   +A+DLF +M+
Sbjct: 581 ETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMK 640

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
           + G KP  VTF+ +L+ACSH GLV+EG  +    S  + I P+  HY C+VD+LGRAG L
Sbjct: 641 QQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQL 700

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           + +  F+  MPIP D  +W +LL AC+ H+N+++ E A KHL E +P +  ++VLL+N Y
Sbjct: 701 DRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAY 760

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE 562
           A  G+     +IR  ++D G++K+ G S IE    VH F  GD  +P +++IY  L+ + 
Sbjct: 761 AVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLN 820

Query: 563 MTL----------------QQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICG 606
             L                +++G   T+  H E+LAVAFGL+S      +R++ NLR+C 
Sbjct: 821 DRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCN 880

Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           DCH++MK TS V  REIV+RD  RFH F  G CSC DYW
Sbjct: 881 DCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 36/301 (11%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +C   +   ++F  +   D +++NT+IS +   G     LG+  +M   G+SPD VT+ S
Sbjct: 190 RCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIAS 249

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L++A + + DL  GK LH +L ++ M +   +   L+D+Y K G I EA ++      D 
Sbjct: 250 LLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFD--SGDR 307

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSC 314
            +VVLW  ++  Y    + D+  + FD       I + ++ +G+  +  +F Y    ++C
Sbjct: 308 TNVVLWNLMLVAY---GQIDDLAKSFD-------IFYRMLAAGV--RPNKFTYPCMLRTC 355

Query: 315 ASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWT 359
              G +  G  +H    KN    D                ++ A  +   I EK+V  WT
Sbjct: 356 THTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWT 415

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           S+IA Y      ++A++ F EM+  G  PD +   + +SAC+    V +G       +RV
Sbjct: 416 SMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQI---HARV 472

Query: 420 Y 420
           Y
Sbjct: 473 Y 473



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 121/247 (48%), Gaps = 19/247 (7%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L+D+Y K G +  A+++    E+   D V W  ++SGY ++   +EA RL+ EM    
Sbjct: 81  NLLIDLYAKKGFVRRARRVF--EELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSG 138

Query: 292 LISWTLMISGMLNQDAE---FKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAY 344
           ++    ++S +L+   +   F+      +     G +   ++    IS+     +  LA 
Sbjct: 139 VVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLAD 198

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F ++   +   + ++I+ +A  GH  +A+ +F EM+ +G  PD VT  +LL+ACS  G
Sbjct: 199 RVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVG 258

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQ----HYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
            + +G     K+   Y +K  M       G ++DL  ++G +EE+     S     +V +
Sbjct: 259 DLRKG-----KQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGD-RTNVVL 312

Query: 461 WSSLLRA 467
           W+ +L A
Sbjct: 313 WNLMLVA 319


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 204/632 (32%), Positives = 326/632 (51%), Gaps = 85/632 (13%)

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEV-----------FAIYLYLVTRTV-L 136
           L  A QI+ Q D+P   +++++I++ + +   Q+            F   L+++ R + +
Sbjct: 55  LKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEM 114

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG----------- 185
             KC  L +  +LFD++P RD+ SWN +IS Y  MG+ +E   L  KM            
Sbjct: 115 YAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMI 174

Query: 186 ---------------------AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
                                ++    ++ T+ S ++A   +  L +GK +H ++  + +
Sbjct: 175 SGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGL 234

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
                + + L DMY KCG I EA+ +  +  + + D+V WT ++  Y +   R E   LF
Sbjct: 235 DSDEVVWSALSDMYGKCGSIEEARHIFDK--MVDRDIVTWTAMIDRYFQDGRRKEGFDLF 292

Query: 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG---------------IWVHVY 329
            +++   +       SG+LN  A    ++   +G   HG                 VH+Y
Sbjct: 293 ADLLRSGIRPNEFTFSGVLNACAN---QTSEELGKKVHGYMTRVGFDPFSFAASALVHMY 349

Query: 330 IKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
            K       N+  A  +F E  + +++ WTS+IA YA  G   +AI  F  + ++GT+PD
Sbjct: 350 SK-----CGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPD 404

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            +TF+ +LSAC+H GLVD+G D+       Y +     HY C++DLL R+G  +E+ N I
Sbjct: 405 HITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENII 464

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
           + M + PD  +W+SLL  CR H N+KLA+ A + L E +P N   +V LANIYA AG   
Sbjct: 465 SKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWS 524

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           ++++IR  + D G+ K+ G S I     VH F  GD  +P S+EI   L ++   ++++G
Sbjct: 525 EVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEG 584

Query: 570 L---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
                           +E +L  H E+LAVAFG+IST E T I++  NLR C DCH+ +K
Sbjct: 585 FVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIK 644

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             S++ NR+I++RD+ RFH F+ G CSCRDYW
Sbjct: 645 FISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/632 (31%), Positives = 325/632 (51%), Gaps = 72/632 (11%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           R+C ++    ++H+   T+    D   +  +       GDL  A+++  +     +  WN
Sbjct: 52  RACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWN 111

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
                 L  GY +                   G L    +LFD++P R+V +WN M++  
Sbjct: 112 I-----LFGGYIKN------------------GDLGGARKLFDEMPERNVATWNAMVAGL 148

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           T++G   E LG    M  EG+ PDE  + S+      LRD+  G+ +H ++  S +    
Sbjct: 149 TNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDM 208

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM- 287
            + + L  MY +CG + E + +L    +  + +V   T+++G  ++ + + A   F  M 
Sbjct: 209 CVGSSLAHMYMRCGCLQEGEAVL--RMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMR 266

Query: 288 ---VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS--IDNIEL 342
              V  +++++   IS            SC+ + AL  G  +H  + K  +   +  +  
Sbjct: 267 SVGVAADVVTFVSAIS------------SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTC 314

Query: 343 AYDLFSEI-----SEK--------NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
              ++S       SE+        + +L +++I+AY   GH QKAI+LF +M   G +P 
Sbjct: 315 LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPS 374

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            VTF+ALL ACSH GL +EG D     ++ Y ++P ++HY C+VDLLGR+G L+E+   I
Sbjct: 375 DVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALI 434

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
            SMP+ PD  IW +LL AC+  +N  +AE   K + E DP +  ++VLL+NI A + R  
Sbjct: 435 LSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWG 494

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           D+S +R  +RD  ++K+ G S +E  G +H+F +GD  +P  +EI   L E+   ++Q G
Sbjct: 495 DVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCG 554

Query: 570 L---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
                           +E SL  H E+LA+AF  +S  E   IR++ NLR+C DCH  +K
Sbjct: 555 YSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIK 614

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + SQV  REIV+RD  RFH F+ G+CSCRDYW
Sbjct: 615 LMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 325/608 (53%), Gaps = 75/608 (12%)

Query: 104 IKIWNSIIENQLINGYPQEVFAI--YLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISW 161
           +K +N I+   ++ G+  + FA    L   T +  +     L    Q+FD++ N +   W
Sbjct: 42  LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIG----LDYSLQIFDRIENSNGFMW 97

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG-KNLHLFLE 220
           NTM+  Y       + L L   M    V PD  T   ++ A   +R LE G K +H  + 
Sbjct: 98  NTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA-CAVRLLEFGGKEIHDHVL 156

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD-- 278
           +        + N L++MY  CG + +A+KL     +  +D V W ++++GYVK  +    
Sbjct: 157 KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV--LDSVSWNSILAGYVKKGDMGQV 214

Query: 279 -EARRLFDEMVERNLISWTLMISGMLNQDAEFK------------------------YKS 313
            EA +LF+EM E++++SW+ +ISG   Q+  ++                          +
Sbjct: 215 MEAWKLFNEMDEKDMVSWSALISG-YEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSA 273

Query: 314 CASI-----GALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEK 353
           CA +     G + HG+ + + I+ + +++ N               +E A ++F+ + EK
Sbjct: 274 CAHLSIVKTGKMIHGLVIRMGIE-SYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEK 332

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
            V  W ++I   A+ G  ++++D+F EM+  G  P+++TF+ +L AC H GLVDEG    
Sbjct: 333 GVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHF 392

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           +     + I+P ++HYGCMVDLLGRAG L E+   I SMP+ PDV+ W +LL AC+ H +
Sbjct: 393 ASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGD 452

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
            ++ E   + L E  P +DG HVLL+NI+A  G  +D+  +R  ++  G+ K  G SLIE
Sbjct: 453 TEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIE 512

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QH 577
             G VH+F +GD  +P   ++  MLNE+   L+ +G                +ET+L +H
Sbjct: 513 ANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRH 572

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            E+LA+AFGL++ S  T IRI+ NLRIC DCH+  K+ S+ Y REIV+RD  RFH F+ G
Sbjct: 573 SEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEG 632

Query: 638 QCSCRDYW 645
            CSC DYW
Sbjct: 633 ACSCMDYW 640



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 164/382 (42%), Gaps = 57/382 (14%)

Query: 36  NVCPVSLDVIMVERSCS-SIDEF--ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           NV P +    +V ++C+  + EF  + IH H++      D  +   +       G++  A
Sbjct: 124 NVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDA 183

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152
           +++  +    +   WNSI+      GY ++                  G++ E  +LF++
Sbjct: 184 RKLFDESPVLDSVSWNSILA-----GYVKK---------------GDMGQVMEAWKLFNE 223

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +  +D++SW+ +IS Y   GMY E L +  +M A G+  DEV +VS++SA   L  ++ G
Sbjct: 224 MDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 283

Query: 213 KNLHLFL----EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           K +H  +     ES + +  +L++   DMY KCG +  A ++    E  E  V  W  L+
Sbjct: 284 KMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGME--EKGVSSWNALI 341

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG-IWVH 327
            G   +   + +  +F EM    +I   +   G+L         +C  +G +  G     
Sbjct: 342 IGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLG--------ACRHMGLVDEGRCHFA 393

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
             I+K+ I                E NV  +  ++     AG   +A  L   +E     
Sbjct: 394 SMIEKHGI----------------EPNVKHYGCMVDLLGRAGLLNEAEKL---IESMPMA 434

Query: 388 PDQVTFIALLSACSHGGLVDEG 409
           PD  T+ ALL AC   G  + G
Sbjct: 435 PDVATWGALLGACKKHGDTEMG 456


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/655 (30%), Positives = 333/655 (50%), Gaps = 79/655 (12%)

Query: 39  PVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P ++ ++ V   C+S+      +++H   +T+ ++++  +   + +     G +  A  +
Sbjct: 227 PDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTV 286

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
                  ++  WN+     ++ GY Q                   G+ ++  +LF+K+  
Sbjct: 287 FSNMSVKDVVSWNA-----MVAGYSQ------------------IGRFEDAVRLFEKMQE 323

Query: 156 R----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
                DV++W+  IS Y   G+  E LG+  +M + G+ P+EVT++S++S    +  L  
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383

Query: 212 GKNLHLF-------LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           GK +H +       L ++       ++N L+DMY KC K+  A+ +       E DVV W
Sbjct: 384 GKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTW 443

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISW--TLMISGMLNQDAEFKYKSCASIGALYH 322
           T ++ GY +  + ++A  L  EM E +  +      IS  L         +CAS+ AL  
Sbjct: 444 TVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL--------VACASLAALRI 495

Query: 323 GIWVHVYIKKNQ----------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
           G  +H Y  +NQ                    +I  A  +F  +  KN   WTS++  Y 
Sbjct: 496 GKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYG 555

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
           M G+ ++A+ +F EM   G K D VT + +L ACSH G++D+G ++ ++   V+ + P  
Sbjct: 556 MHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGP 615

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HY C+VDLLGRAG L  +   I  MP+ P   +W + L  CR H  V+L E+A + +TE
Sbjct: 616 EHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITE 675

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
               +DG++ LL+N+YA AGR  D++RIR  +R  G+KK+ G S +E       F  GD 
Sbjct: 676 LASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDK 735

Query: 547 FNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLIST 590
            +PH++EIY +L +    ++  G + ET                 +H E+LA+A+G+++T
Sbjct: 736 THPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTT 795

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +   IRI  NLR+CGDCH+     S++ + +I++RD+ RFH F+ G CSC+ YW
Sbjct: 796 PQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/518 (23%), Positives = 221/518 (42%), Gaps = 107/518 (20%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI--WN 108
           C +I + + IH  L++  ++    +++ +    +  G L +A  ++R+    +  +  WN
Sbjct: 38  CKTISQVKLIHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWN 96

Query: 109 SIIENQLINGYPQEVFAIY------------------------------------LYLVT 132
           S+I +   NG   +   ++                                    L LVT
Sbjct: 97  SLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVT 156

Query: 133 RTV-----------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
             +           + ++C  L +  ++FD++   DV+SWN++I  Y  +G  +  L + 
Sbjct: 157 GFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMF 216

Query: 182 SKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           S+M  E G  PD +T+V+++     L    +GK LH F   S M  +  + N LVDMY K
Sbjct: 217 SRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAK 276

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWT 296
           CG + EA  +     +   DVV W  +V+GY +    ++A RLF++M E     ++++W+
Sbjct: 277 CGMMDEANTVFSNMSVK--DVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS 334

Query: 297 LMISGMLNQDAEFK-----------------------YKSCASIGALYHGIWVHVY---- 329
             ISG   +   ++                          CAS+GAL HG  +H Y    
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKY 394

Query: 330 ---IKKNQISIDN---------------IELAYDLFSEIS--EKNVYLWTSVIAAYAMAG 369
              ++KN    +N               ++ A  +F  +S  E++V  WT +I  Y+  G
Sbjct: 395 PIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454

Query: 370 HAQKAIDLFLEM--EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            A KA++L  EM  E+  T+P+  T    L AC+    +  G    +   R       + 
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLF 514

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
              C++D+  + G + ++     +M    +V+ W+SL+
Sbjct: 515 VSNCLIDMYAKCGSISDARLVFDNMMAKNEVT-WTSLM 551


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 205/663 (30%), Positives = 327/663 (49%), Gaps = 94/663 (14%)

Query: 39  PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + ++ +  +C+S+    R   +H   I + L+ D  +   V +     G +  A ++
Sbjct: 362 PDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKV 421

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
            ++    ++  WN+     ++ GY Q                   G+L+    LF+++  
Sbjct: 422 FQRMKFKDVVSWNA-----MVTGYSQA------------------GRLEHALSLFERMTE 458

Query: 156 R----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
                DV++W  +I+ Y   G   E L +  +M   G  P+ VT+VSL+SA   +  L  
Sbjct: 459 ENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLH 518

Query: 212 GKNLHLFLEESTMKISGS--------LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
           GK  H +  +  + + G         ++N L+DMY KC     A+K+       + DVV 
Sbjct: 519 GKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVT 578

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK---------SC 314
           WT ++ GY +  + + A +LF               SGM   D   K           +C
Sbjct: 579 WTVMIGGYAQHGDANNALQLF---------------SGMFKMDKSIKPNDFTLSCALVAC 623

Query: 315 ASIGALYHGIWVHVYIKKN----------QISID------NIELAYDLFSEISEKNVYLW 358
           A + AL  G  VH Y+ +N             ID      +++ A  +F  + ++N   W
Sbjct: 624 ARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSW 683

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           TS++  Y M G  + A+ +F EM +    PD +TF+ +L ACSH G+VD G +F ++ S+
Sbjct: 684 TSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSK 743

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            + + P  +HY CMVDL GRAG L E+   I  MP+ P   +W +LL ACR H NV+L E
Sbjct: 744 DFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGE 803

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A   L E +  NDG++ LL+NIYA A R  D++RIR  ++  G+KK+ G S I+    V
Sbjct: 804 FAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGV 863

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLA 582
             F  GD  +P S++IY  L ++   ++  G + +TS                +H E+LA
Sbjct: 864 ATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 923

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           +A+G+++   +  IRI  NLRICGDCHS +   S++   EI++RD+ RFH F+ G CSC+
Sbjct: 924 LAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCK 983

Query: 643 DYW 645
            YW
Sbjct: 984 GYW 986



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 142/594 (23%), Positives = 241/594 (40%), Gaps = 115/594 (19%)

Query: 19  LVRLGLVPKMRISRKFANVCPVSLDVIMVE--RSCSSIDEFERIHSHLITTNLMRDPQIS 76
           L+R   +    +  +F N   +S   I +   + C+S+   + +H   I   L+    ++
Sbjct: 137 LLRCFPIKSKLLQSQFTNTRLLSCATIPITALKECNSLAHAKLLHQQSIMQGLLF--HLA 194

Query: 77  TQVFEFLVFTGDLGYAQQII-RQGDEPE-IKIWNSIIENQLINGYPQEVFAIYLYL---- 130
           T +    + +    YA  ++ R    P  +  WN +I   L  G P++VF +Y  +    
Sbjct: 195 TNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLG 254

Query: 131 ------------------------------VTRT-------------VLLNKCGKLKEVC 147
                                         V+R+              +  KCG L+   
Sbjct: 255 WTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAH 314

Query: 148 QLFDKLPNR---DVISWNTMISCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMVSLISAR 203
            +FD L +R   D++SWN+++S Y         L L  KM    + SPD +++V+++ A 
Sbjct: 315 NMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPAC 374

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
             L     G+ +H F   S +     + N +VDMY KCGK+ EA K+  R +    DVV 
Sbjct: 375 ASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK--DVVS 432

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNL----ISWTLMISGML--NQDAE----FK--- 310
           W  +V+GY ++   + A  LF+ M E N+    ++WT +I+G     Q  E    F+   
Sbjct: 433 WNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMC 492

Query: 311 --------------YKSCASIGALYHGIWVHVYIKKNQISID------------------ 338
                           +C S+GAL HG   H Y  K  +++D                  
Sbjct: 493 DCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDM 552

Query: 339 -----NIELAYDLFSEISEK--NVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPD 389
                + E+A  +F  +S K  +V  WT +I  YA  G A  A+ LF  M   +   KP+
Sbjct: 553 YAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPN 612

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
             T    L AC+    +  G    +   R +     +    C++D+  ++G ++ +    
Sbjct: 613 DFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVF 672

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
            +MP    VS W+SL+     H   + A   F  + +   + DG   L+  +YA
Sbjct: 673 DNMPQRNAVS-WTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVV-LYA 724


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 207/616 (33%), Positives = 306/616 (49%), Gaps = 124/616 (20%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD++  R +I WNT+I CY       +G+ L  ++  E + PD  T+  +I    +L  
Sbjct: 69  IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGV 127

Query: 209 LEMGKNLH-LFLE---ESTMKISGSLLNYLVDMYFKCGKIGEAQKLL------------- 251
           ++ GK +H L L+    S + + GSL+N    MY KCG+I  A+K+              
Sbjct: 128 VQEGKQIHGLALKIGFGSDVFVQGSLVN----MYSKCGEIDCARKVFDGMIDKDVVLWNS 183

Query: 252 ---GRYEIDEVDVVL-------------WTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
              G     E+D+ L             WT LV G  K  + + AR+LFD+M  RNL+SW
Sbjct: 184 LIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSW 243

Query: 296 TLMI-----SGMLNQDAEFKYK-------------------------------------- 312
             MI     SG  +   E  Y+                                      
Sbjct: 244 NAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR 303

Query: 313 -----------SCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDL 346
                      + + +  L  G W+H Y++KN   +D I               E A  +
Sbjct: 304 PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTV 363

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  I +K V  WT++I    + G A  A+ LFLEM +TG KP+ + FI +L+AC+H GLV
Sbjct: 364 FRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLV 423

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           D+G  +       Y I+P ++HYGC+VD+L RAGHLEE+ N I +MPI P+  IW SLL 
Sbjct: 424 DDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLG 483

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
             R H  + + E+A + + E  P   G ++LL+N+YA +G  + +S +R  +   G +K 
Sbjct: 484 GSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKD 543

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ---------- 576
            G S +E  G +H+F  GDI +P ++EIY  ++E++  L+  G    + Q          
Sbjct: 544 PGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKE 603

Query: 577 -------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
                  H ERLA+AFGLI+      IRI+ NLR+C DCHS  K+ S++Y+REI++RDN 
Sbjct: 604 KEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNC 663

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSC DYW
Sbjct: 664 RFHHFKNGSCSCMDYW 679


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/586 (33%), Positives = 306/586 (52%), Gaps = 56/586 (9%)

Query: 92  AQQIIRQGDEPEIKI------WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145
           A++ I+ G +   ++      ++++I  +L+N          LY V        C  L  
Sbjct: 87  ARKAIKPGKQLHAQVCLAGFGFDTVIATKLVN----------LYCV--------CDSLSS 128

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
              LFD++P  ++  WN +I  Y   G Y   + L  +M   G+ PD  T   ++ A   
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           L  +E G+ +H  + ++  +    +   L+DMY KCG +G A+++  +  +   D VLW 
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR--DAVLWN 246

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI- 324
           ++++ Y ++   D    L  EMV   L      +   ++  A+    +    G   HG+ 
Sbjct: 247 SMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASAD---NAALPQGRELHGLS 303

Query: 325 WVHVYIKKNQISI---------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           W   +   +++            ++ +A +LF  +  K V  W ++I  YAM GHA +A+
Sbjct: 304 WRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEAL 363

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           DLF EM     KPD +TF+ +LSACSHGGL++EG+ F     R Y I P +QHY CMVDL
Sbjct: 364 DLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDL 422

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           LG +G L+E+ N I  M + PD  +W +LL +C+ H NV+L E A + L E +P + G +
Sbjct: 423 LGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNY 482

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           V+L+NIYA+AG+ + ++++R  + D  LKK +  S IE    VH F SGD  +P S+EIY
Sbjct: 483 VILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIY 542

Query: 556 LMLNEIEMTLQQQGLQETS----------------LQHRERLAVAFGLISTSEKTTIRIV 599
             L  +   +++ G   ++                  H ERLA+AFGLIST   T + I 
Sbjct: 543 SELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLIT 602

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLRIC DCH  +K  S++  REI +RD  R+H F+ G CSC DYW
Sbjct: 603 KNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/576 (33%), Positives = 307/576 (53%), Gaps = 42/576 (7%)

Query: 102 PEIKIWNSIIENQLINGYPQEV-FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVI 159
           P +     I   + I+GY     F   + + T  V +  KCG LK    LFD +  R+V+
Sbjct: 244 PAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVV 303

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SWN+MI  Y      +E + +  KM  EGV P +V+++  + A   L DLE G+ +H   
Sbjct: 304 SWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 363

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
            E  +  + S++N L+ MY KC ++  A  + G+  +    +V W  ++ G+ ++    E
Sbjct: 364 VELELDRNVSVVNSLISMYCKCKEVDTAASMFGK--LQSRTIVSWNAMILGFAQNGRPIE 421

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID- 338
           A   F +M  R +   T     ++   AE        +   +H  W+H  + +N +  + 
Sbjct: 422 ALNYFSQMQARTVKPDTFTYVSVITAIAE--------LSITHHAKWIHGVVMRNCLDKNV 473

Query: 339 --------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
                          I +A  +F  +SE++V  W ++I  Y   G  + A++LF EM++ 
Sbjct: 474 FVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKG 533

Query: 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
             +P+ VTF++++SACSH GLV+ G          Y+I+P M HYG MVDLLGRAG L E
Sbjct: 534 TIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNE 593

Query: 445 SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504
           + +FI  MP+ P V+++ ++L AC+ H+NV  AE   + L E +P + G HVLLANIY  
Sbjct: 594 AWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRA 653

Query: 505 AGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMT 564
           A   + + ++R+ +   GL+K  G S++E    VH F SG   +P S++IY  L ++   
Sbjct: 654 ASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQ 713

Query: 565 LQQQG-LQETSL--------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
           +++ G + +T+L               H E+LA++FGL++T+  TTI +  NLR+C DCH
Sbjct: 714 IKEAGYVPDTNLILGLEDDVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCH 773

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  K  S V  REI++RD  RFH F+ G CSC DYW
Sbjct: 774 NATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 176/345 (51%), Gaps = 38/345 (11%)

Query: 70  MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLY 129
           MRD ++   V+ F        Y  ++   GDE E+++   I    + +G+  ++FA    
Sbjct: 126 MRDDEVEPVVYNFT-------YLLKVC--GDEAELRVGKEIHGLLVKSGFSLDLFA---- 172

Query: 130 LVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           +     +  KC ++ E  ++FD++P RD++SWNT+++ Y+  GM R  L +++ M  E +
Sbjct: 173 MTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENL 232

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            P  +T+VS++ A + LR + +GK +H +   +      ++   LVDMY KCG +  A+ 
Sbjct: 233 KPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARL 292

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           L     + E +VV W +++  YV++    EA  +F +M++  +    + + G L+     
Sbjct: 293 LFD--GMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALH----- 345

Query: 310 KYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKN 354
              +CA +G L  G ++H           V +  + IS+      ++ A  +F ++  + 
Sbjct: 346 ---ACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRT 402

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           +  W ++I  +A  G   +A++ F +M+    KPD  T++++++A
Sbjct: 403 IVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITA 447



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 135/303 (44%), Gaps = 19/303 (6%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           NG  QE    +L+      L  + G + E  ++F+ +  +  + + TM+  +  +    +
Sbjct: 63  NGLYQE----HLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDK 118

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L    +M  + V P       L+       +L +GK +H  L +S   +    +  L +
Sbjct: 119 ALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY KC ++ EA+K+  R  + E D+V W T+V+GY ++     A  + + M E NL    
Sbjct: 179 MYAKCRQVHEARKVFDR--MPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSF 236

Query: 297 LMISGMLNQDAEFKYKSCASIGALYHG----------IWVHVYIKKNQISIDNIELAYDL 346
           + I  +L   +  +      IG   HG          + +   +        +++ A  L
Sbjct: 237 ITIVSVLPAVSALRL---IRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLL 293

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  + E+NV  W S+I AY    + ++A+ +F +M + G KP  V+ +  L AC+  G +
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDL 353

Query: 407 DEG 409
           + G
Sbjct: 354 ERG 356


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/588 (33%), Positives = 319/588 (54%), Gaps = 54/588 (9%)

Query: 101 EPEIKIWNSIIENQLINGYPQEVFAIYLY---------LVTRTVLL---NKCGKLKEVCQ 148
           EP+  ++N++++     G  +E   ++ +         LV +  LL    +CG L+   +
Sbjct: 71  EPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARR 130

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LFD++P+RD++SW +MI+ Y       + L L  +M ++G  P+E T+ SL+     +  
Sbjct: 131 LFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMAS 190

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
              G+ +H    +     +  + + LVDMY +CG +GEA  +  +      + V W  L+
Sbjct: 191 YNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCK--NEVSWNALI 248

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           +GY +  E +EA  LF  M            S +L+        SC+S+G L  G W+H 
Sbjct: 249 AGYARKGEGEEALALFVRMQREGYRPTEFTYSALLS--------SCSSMGCLEQGKWLHA 300

Query: 329 YIKKNQISI---------------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           ++ K+   +                +I  A  +F ++ + +V    S++  YA  G  ++
Sbjct: 301 HLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKE 360

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A   F EM   G +P+ +TF+++L+ACSH  L+DEG  +     R YNI+PK+ HY  +V
Sbjct: 361 AAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIV 419

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLLGRAG L+++ +FI  MPI P V+IW +LL A + H+N ++  +A + + E DP   G
Sbjct: 420 DLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPG 479

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            H LLANIYA AGR +D++++R  ++D G+KK+   S +E    VH F + D+ +P  E+
Sbjct: 480 THTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEK 539

Query: 554 IYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIR 597
           I+ M  ++   +++ G                +E +LQ H E+LA++F L++T   +TIR
Sbjct: 540 IHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIR 599

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I+ N+R+CGDCHS +K  S V  REI++RD  RFH F  G CSC DYW
Sbjct: 600 IMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 182/516 (35%), Positives = 289/516 (56%), Gaps = 56/516 (10%)

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M  +GV P++ T+ +++ A   +  LE GK  H ++ +   +    +   LV MY +CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-- 301
           + +A  +  +  + E     W  +++G+ ++ +  +A +LF EM ER+++SWT +I+G  
Sbjct: 61  LEDAGHVFDK--MSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYA 118

Query: 302 ----------MLNQDAEFKYKS-----------CASIGALYHGIWVHVYIKKNQISID-- 338
                     + NQ  +   KS           CA + AL  G   H Y+ ++  ++D  
Sbjct: 119 QNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIV 178

Query: 339 -------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
                        ++E A  +F ++ ++N   W S+I   A  G    A+ LF +M + G
Sbjct: 179 VGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG 238

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
            KP++++F+ +LSACSH GLV+EG  + +  ++ Y I P + HY CM+DLLGRAG L+E+
Sbjct: 239 IKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEA 298

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
            NFI  MP+ PDVS+W +LL ACR H N +LA+   +HL   +    G +VLL+NIYA A
Sbjct: 299 ENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAA 358

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
           G+ DD +++R  ++D G+ KQ GYS IE    +H F +G+  +P  +EI+  L  +   +
Sbjct: 359 GQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKM 418

Query: 566 QQQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
           +  G                +E SL  H E+LA+AFG+I+T+  TTIR+  NLR+CGDCH
Sbjct: 419 KAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCH 478

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + +K  S  + R+IV+RD  RFH F+ G+CSC DYW
Sbjct: 479 TVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 181/541 (33%), Positives = 302/541 (55%), Gaps = 41/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KC  + +  + +D +P +D+I+WN +IS Y+  G + + + L SKM +E +  ++ T
Sbjct: 328 MYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTT 387

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + +++ +   L+ +++ K +H    +S +     ++N L+D Y KC  I EA K+     
Sbjct: 388 LSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERT 447

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
            +  D+V +T++++ Y +  + +EA +L+ +M + ++     + S +LN        +CA
Sbjct: 448 WE--DLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLN--------ACA 497

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           ++ A   G  +HV+  K     D               +IE A   FSEI  + +  W++
Sbjct: 498 NLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSA 557

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I  YA  GH ++A+ LF +M   G  P+ +T +++L AC+H GLV+EG  +  K   ++
Sbjct: 558 MIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMF 617

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            IKP  +HY CM+DLLGR+G L E+   + S+P   D  +W +LL A R H+N++L + A
Sbjct: 618 GIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKA 677

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K L + +P   G HVLLANIYA AG  ++++++R  ++D  +KK+ G S IE    V+ 
Sbjct: 678 AKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYT 737

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVA 584
           F  GD  +  S+EIY  L+++   L + G                 ++    H E+LAVA
Sbjct: 738 FIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVA 797

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI+T     IR+  NLRIC DCH+F K   ++ +REI++RD  RFH F+ G CSC DY
Sbjct: 798 FGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDY 857

Query: 645 W 645
           W
Sbjct: 858 W 858



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 145/651 (22%), Positives = 255/651 (39%), Gaps = 135/651 (20%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+HLI     RDP +   +          GYA++++ +  E ++  W+S++   + NG+
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 120 PQEVFAIYLYLV-----------------------------------------------T 132
            +E   ++  +                                                T
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
             V+  KCG L +  +LF  +  R+V+SWN + SCY    +  E +GL  +M   G+ P+
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           E ++  +++A   L++ ++G+ +H  + +  + +     N LVDMY K G+I  A  +  
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF- 241

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
             +I   DVV W  +++G V  +  D A  L DEM           +S  L        K
Sbjct: 242 -QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSAL--------K 292

Query: 313 SCASIGALYHGIWVHVYIKKNQIS------------------IDNIELAYDLFSEISEKN 354
           +CA++G    G  +H  + K                      +D+   AYD    + +K+
Sbjct: 293 ACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYD---SMPKKD 349

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS--HGGLVDEGYDF 412
           +  W ++I+ Y+  G    A+ LF +M       +Q T   +L + +      V +    
Sbjct: 350 IIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHT 409

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI-----------TSM--------- 452
           +S KS +Y+          ++D  G+  H++E++              TSM         
Sbjct: 410 ISIKSGIYS---DFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGD 466

Query: 453 --------------PIPPDVSIWSSLLRAC----RCHQNVKLAEHAFKHLTETDPLNDGA 494
                          I PD  I SSLL AC       Q  +L  HA K     D     +
Sbjct: 467 GEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNS 526

Query: 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV---HKFTSGDIFNPHS 551
              L N+YAK G ++D  R   ++ + G+   + +S +  GG+    H   +  +FN   
Sbjct: 527 ---LVNMYAKCGSIEDADRAFSEIPNRGI---VSWSAM-IGGYAQHGHGKEALRLFNQML 579

Query: 552 EE----IYLMLNEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRI 598
            +     ++ L  +       GL     Q+ E++ V FG+  T E     I
Sbjct: 580 RDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMI 630


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 301/537 (56%), Gaps = 52/537 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L E  +LF++LP RDV +W  M+S +   GM  E   +  +M  +    +EV+  ++I
Sbjct: 260 GLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK----NEVSWNAMI 315

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           +   + + +E  K   LF +  +   S    N +V  Y +CG I +A+ L    E+ + D
Sbjct: 316 AGYVQSQQIE--KARELFDQMPSRNTSS--WNTMVTGYAQCGNIDQAKILFD--EMPQRD 369

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA-EFKYKSCASIGA 319
            + W  ++SGY +S + +EA  LF +M +R+         G+LN+ A      SCA I A
Sbjct: 370 CISWAAMISGYAQSGQSEEALHLFIKM-KRD--------GGILNRSALACALSSCAEIAA 420

Query: 320 LYHGIWVHV----------YIKKNQI-----SIDNIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H           YI  N +        +IE A+D+F +I+EK++  W ++IA 
Sbjct: 421 LELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAG 480

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           YA  G  ++A+ LF  M+ T  KPD VT + +LSACSH G VD+G ++ +   + Y I  
Sbjct: 481 YARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITA 539

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
             +HY CM+DLLGRAG L+E+ N + SMP  PD + W +LL A R H + +L E A + +
Sbjct: 540 NAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKV 599

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P N G +VLL+N+YA +GR  ++  +R K+RD G+KK  GYS +E     H FT G
Sbjct: 600 FEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVG 659

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLI 588
           D  +P +E IY  L E+++ L++ G                +E  L+ H E+LAVAFG++
Sbjct: 660 DCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGIL 719

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S      IR++ NLR+C DCH+ +K  S++  R+I++RD+ RFH F  G CSC DYW
Sbjct: 720 SIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 192/446 (43%), Gaps = 73/446 (16%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L++  V+L+   K G L     LF+++P +DV+SWN M+S +   G   E   +  +M  
Sbjct: 122 LISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM-- 179

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLH----------------LFLEESTMKISGSL 230
             +  +E++   L+SA  +   +E  + L                  ++ +  +  + SL
Sbjct: 180 --LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSL 237

Query: 231 L-----------NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
                       N ++  Y + G + EA++L     I   DV  WT +VSG+V++   DE
Sbjct: 238 FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR--DVFAWTAMVSGFVQNGMLDE 295

Query: 280 ARRLFDEMVERNLISWTLMISGML-NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID 338
           A R+F+EM E+N +SW  MI+G + +Q  E   +    + +     W  +     Q    
Sbjct: 296 ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCG-- 353

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           NI+ A  LF E+ +++   W ++I+ YA +G +++A+ LF++M+  G   ++      LS
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 399 ACS-----------HGGLVDEGYD--------FLSKKSRVYNIKPKMQ-----------H 428
           +C+           HG LV  G+          L+   +  +I+                
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS 473

Query: 429 YGCMVDLLGRAGHLEESANFITSMP--IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +  M+    R G  +E+     SM   I PD      +L AC     V      F  + +
Sbjct: 474 WNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQ 533

Query: 487 TDPLNDGA--HVLLANIYAKAGRLDD 510
              +   A  +  + ++  +AGRLD+
Sbjct: 534 NYGITANAKHYTCMIDLLGRAGRLDE 559



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 168/376 (44%), Gaps = 37/376 (9%)

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
           + D++ WN  IS Y   G     L + + M         VT  ++IS        +  + 
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDCARK 112

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +   + +  + IS    N ++  Y K G +  A+ L    ++ E DVV W  ++SG+ ++
Sbjct: 113 VFEKMPDRDL-IS---WNVMLSGYVKNGNLSAARALFN--QMPEKDVVSWNAMLSGFAQN 166

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKSCASIGALYHGIWVHVYI 330
              +EAR++FD+M+ +N ISW  ++S  +     +DA   + S      +     +  Y+
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           +K +     ++ A  LF  +  ++   W  +I  YA  G   +A  LF E+       D 
Sbjct: 227 RKKR-----LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL----PIRDV 277

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH--YGCMVDLLGRAGHLEESANF 448
             + A++S     G++DE        +R++   P+     +  M+    ++  +E++   
Sbjct: 278 FAWTAMVSGFVQNGMLDEA-------TRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
              MP   + S W++++       N+  A+  F  + + D ++  A +   + YA++G+ 
Sbjct: 331 FDQMP-SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMI---SGYAQSGQS 386

Query: 509 DDMSRIRMKL-RDMGL 523
           ++   + +K+ RD G+
Sbjct: 387 EEALHLFIKMKRDGGI 402



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 134/285 (47%), Gaps = 27/285 (9%)

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD----AEFKY 311
           I + D+V W   +S Y++  + + A  +F+ M  R+ +++  MISG L+ +    A   +
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           +       +   + +  Y+K       N+  A  LF+++ EK+V  W ++++ +A  G  
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNG-----NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
           ++A  +F +M       +++++  LLSA    G +++       K     +  ++  + C
Sbjct: 170 EEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSK-----MDWEIVSWNC 220

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           ++    R   L+++ +    MP+   +S W+ ++      QN  L+E   + L E  P+ 
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKIS-WNIMITG--YAQNGLLSEA--RRLFEELPIR 275

Query: 492 D-GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           D  A   + + + + G LD+ +RI     +M  K ++ ++ +  G
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRI---FEEMPEKNEVSWNAMIAG 317


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 214/675 (31%), Positives = 333/675 (49%), Gaps = 94/675 (13%)

Query: 53  SIDEFERIHSHLITTNLMRD-PQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII 111
           S  + +++H+H+I+ +++ +   ++T++  F    G +  A+ I          +WN +I
Sbjct: 74  SFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMI 133

Query: 112 ENQLINGYPQEVFAIYLYLV---------TRTVLLNKCGKL------------KEVCQL- 149
                NG P +   +Y  ++         T   +L  CG L              VC L 
Sbjct: 134 RGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLE 193

Query: 150 -------------------------FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
                                    FD++  RD+ SWNTMIS Y           +   M
Sbjct: 194 SDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLM 253

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGK 243
           G  G+  D  T++ L+SA   L+ ++ GK +H + +  S    +    N L++MY  C  
Sbjct: 254 GKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNC 313

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           + +A++L  R  +   D V W +++ GY ++ +  E+ RLF  M           + G  
Sbjct: 314 MVDARRLFER--VRWKDTVSWNSMILGYARNGDAFESLRLFRRMA----------LDGSG 361

Query: 304 NQDAEF--KYKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDL 346
                F     +C  I AL +G+ +H Y+ K     + I                 +  +
Sbjct: 362 PDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRV 421

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F E+ +K++  W++++A Y + G  ++AI +   M+     PD   F ++LSACSH GLV
Sbjct: 422 FDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLV 481

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
            EG +   K  + YN+KP + HY CMVDLLGRAGHL+E+   I +M I P   IW++LL 
Sbjct: 482 VEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLT 541

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           A R H+N+KLAE + + + + +P    +++ L+NIYA   R DD+ R+R  +R  GLKK 
Sbjct: 542 ASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKS 601

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSL---------- 575
            G S IE    VH+F  GD  +  +E+IY  LNE++  L++ G + +TSL          
Sbjct: 602 PGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVK 661

Query: 576 -----QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
                 H ERLA+AF LI+T   T IRI  NLR+CGDCH+  K+ S++  REI++RD  R
Sbjct: 662 EKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHR 721

Query: 631 FHRFQGGQCSCRDYW 645
           FH F  G CSC DYW
Sbjct: 722 FHHFIKGFCSCGDYW 736


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 301/556 (54%), Gaps = 43/556 (7%)

Query: 121 QEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           Q+ F     + +  V L+  G +    ++F    + ++  WNT+I  Y+        + L
Sbjct: 37  QDTFLTSKLIESSAVTLS--GHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIAL 94

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
              M   G+SP+  T   ++ A  KL  L  G+ LH  + +  +     L+N L+ +Y  
Sbjct: 95  YRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAA 154

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG +  A  +    E+ E D   W+T+VSGY ++ +  EA +LF EM   N+ S    ++
Sbjct: 155 CGCMDYACVMFD--EMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLA 212

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYD 345
            ++          C  +GAL  G WVH Y+ K  + ID               +++ A  
Sbjct: 213 SVVG--------VCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALK 264

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  ++E++V  W+++IA YA+ GH +KA+ LF  M+ + T P+ VTF ++LSACSH GL
Sbjct: 265 VFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGL 324

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           V++G+         Y I P+++HYGCMVDL  RAG +  +  FI +MPI P+V +W +LL
Sbjct: 325 VEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLL 384

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            AC+ H    L EH  + + + DP +   +VL++N+YA  GR   + ++R  ++D   KK
Sbjct: 385 GACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKK 444

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ--------- 576
           Q G+S IE    VHKF  GD  +P  E+IY ML+++   L+Q G   +++          
Sbjct: 445 QHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEE 504

Query: 577 -------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
                  H ERLA+A+GL+ T   + IRIV NLR+C DCH  +K+ S+VYNREI++RD  
Sbjct: 505 KEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRV 564

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+   CSC DYW
Sbjct: 565 RFHHFRERGCSCNDYW 580


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 302/556 (54%), Gaps = 57/556 (10%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           LV    LLN   KCG L+E  ++FDK+P RD ++W T+IS Y+      + L L ++M  
Sbjct: 86  LVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLR 145

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G SP+E T+ S+I A    R    G  LH F  +     +  + + L+D+Y + G + +
Sbjct: 146 FGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDD 205

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           AQ +     ++  + V W  L++G+ +    ++A  LF  M+                + 
Sbjct: 206 AQLVFD--ALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGF------------RP 251

Query: 307 AEFKYKS----CASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLF 347
           + F Y S    C+S G L  G WVH Y+ K+   +                +I  A  +F
Sbjct: 252 SHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIF 311

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             +++++V  W S++ AYA  G   +A+  F EM   G +P++++F+++L+ACSH GL+D
Sbjct: 312 DRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLD 371

Query: 408 EGYDF--LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           EG+ +  L KK     I  +  HY  +VDLLGRAG L  +  FI  MPI P  +IW +LL
Sbjct: 372 EGWHYYELMKKD---GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 428

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            ACR H+N +L  +A +H+ E DP + G HV+L NIYA  GR +D +R+R K+++ G+KK
Sbjct: 429 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 488

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
           +   S +E    +H F + D  +P  EEI     E+   +++ G                
Sbjct: 489 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 548

Query: 571 QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           +E +LQ H E++A+AF L++T   +TI I  N+R+CGDCHS +K+ S+   REI++RD  
Sbjct: 549 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTN 608

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSC+DYW
Sbjct: 609 RFHHFKDGACSCKDYW 624



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 139/301 (46%), Gaps = 39/301 (12%)

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +L+   T  + L  G+ +H  L +S  +    + N L++MY KCG + EA+K+  +  + 
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDK--MP 113

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           E D V WTTL+SGY + +   +A  LF++M+          +S ++   A  +   C   
Sbjct: 114 ERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCC--- 170

Query: 318 GALYHGIWV------HVYIKKNQISI-------DNIELAYDLFSEISEKNVYLWTSVIAA 364
           G   HG  V      +V++    + +       D+ +L +D    +  +N   W ++IA 
Sbjct: 171 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFD---ALESRNDVSWNALIAG 227

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           +A     +KA++LF  M   G +P   ++ +L  ACS  G +++G     K    Y IK 
Sbjct: 228 HARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG-----KWVHAYMIKS 282

Query: 425 --KMQHYG--CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
             K+  +    ++D+  ++G + ++      +    DV  W+SLL A         A+H 
Sbjct: 283 GEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTA--------YAQHG 333

Query: 481 F 481
           F
Sbjct: 334 F 334


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 189/544 (34%), Positives = 304/544 (55%), Gaps = 47/544 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G   +V ++F+++P  DVI W+ MIS Y      RE + L  +M    V P++ T
Sbjct: 186 LYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFT 245

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++ +   + +L++GK +H  + +  +  +  + N L+D+Y KCG++  + KL    E
Sbjct: 246 FASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLF--ME 303

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   + V W T++ GYV+S + D+A  L+  M+E  + +  +  S +L        ++CA
Sbjct: 304 LPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVL--------RACA 355

Query: 316 SIGALYHGIWVH------VYIKKNQI------------SIDNIELAYDLFSEISEKNVYL 357
           S+ A+  G  +H      +Y K   +            SI N  L +D+ SE  E +   
Sbjct: 356 SLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEIS--- 412

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           W ++I+ Y+M G   +A+  F  M+ET   P+++TF+++LSACS+ GL+D G ++     
Sbjct: 413 WNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMV 472

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
           + Y I+P M+HY CMV LLGR+GHL+++   I  +P+ P+V +W +LL AC  H +V L 
Sbjct: 473 QDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLG 532

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
             + + + + DP ++  HVLL+NIYA+  R + ++ +R  +++ G+KK+ G S IE  G 
Sbjct: 533 IMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGI 592

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERL 581
           VH F+ GD  +P  + I  ML  + M  ++ G                 +     H ERL
Sbjct: 593 VHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERL 652

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AFGLI T  +  IRI+ NLRIC DCHS +K+ S++  R+I+IRD  RFH FQ G CSC
Sbjct: 653 ALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSC 712

Query: 642 RDYW 645
            DYW
Sbjct: 713 GDYW 716



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 215/479 (44%), Gaps = 65/479 (13%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQ--IIRQGDEPEIKIWNS 109
           +D F R+H      N    P + T + + LV     +L Y+    I + G E      N+
Sbjct: 26  VDLFSRVHREGHELN----PFVFTTILKLLVSVECAELAYSLHACIYKLGHES-----NA 76

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
            +   LI+ Y                    CG +    Q FD +  +D++SW  M++CY 
Sbjct: 77  FVGTALIDAYA------------------VCGSVNSARQAFDAIACKDMVSWTGMVACYA 118

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
               +++ L L ++M   G +P+  T   ++ A   L    +GK++H  + ++  ++   
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRY-EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           +   L+D+Y    K G+A  +L  + E+ + DV+ W+ ++S Y +SN+  EA  LF +M 
Sbjct: 179 VGVGLLDLY---TKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMR 235

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----NQISIDN----- 339
              ++      + +L        +SCASI  L  G  VH ++ K      + + N     
Sbjct: 236 RAFVLPNQFTFASVL--------QSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDV 287

Query: 340 ------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                 ++ +  LF E+  +N   W ++I  Y  +G   KA+ L+  M E   +  +VT+
Sbjct: 288 YAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTY 347

Query: 394 IALLSACSHGGLVDEGYDF--LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
            ++L AC+    ++ G     LS K+ +Y+    + +   ++D+  + G + ++A  +  
Sbjct: 348 SSVLRACASLAAMELGTQIHSLSLKT-IYDKDVVVGN--ALIDMYAKCGSI-KNARLVFD 403

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL-NDGAHVLLANIYAKAGRLD 509
           M    D   W++++     H  V  A  AF+ + ET+ + N    V + +  + AG LD
Sbjct: 404 MLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLD 462



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/328 (20%), Positives = 143/328 (43%), Gaps = 27/328 (8%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +P+R+ +S+ T+I  Y       E + L S++  EG   +     +++     +   E+ 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
            +LH  + +   + +  +   L+D Y  CG +  A++      I   D+V WT +V+ Y 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFD--AIACKDMVSWTGMVACYA 118

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
           +++   ++ +LF EM            +G+L        K+C  + A   G  VH  + K
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVL--------KACIGLEAFSVGKSVHGCVLK 170

Query: 333 NQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
               +D               +      +F E+ + +V  W+ +I+ YA +  +++A++L
Sbjct: 171 TCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVEL 230

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M      P+Q TF ++L +C+    +  G        +V  +   +     ++D+  
Sbjct: 231 FGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKV-GLDGNVFVSNALMDVYA 289

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLL 465
           + G L+ S      +P   +V+ W++++
Sbjct: 290 KCGRLDNSMKLFMELPNRNEVT-WNTMI 316


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 295/542 (54%), Gaps = 43/542 (7%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            K G L E   +F  +  RD+++WN++IS     G     + L   M   GV PD +T+V
Sbjct: 214 GKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLV 273

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEI 256
           SL SA  +  D    K++H ++      +   +  N +VDMY K  KI  AQK+     +
Sbjct: 274 SLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFD--NL 331

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + DVV W TL++GY+++   +EA R++++M   N      +    ++    + Y     
Sbjct: 332 PDRDVVSWNTLITGYMQNGLANEAIRIYNDM--HNHEGLKPIQGTFVSVLPAYSY----- 384

Query: 317 IGALYHGIWVHVYIKKNQISIDN------IEL---------AYDLFSEISEKNVYLWTSV 361
           +G L  G+ +H    K  +++D       I+L         A  LF  +  ++   W ++
Sbjct: 385 LGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAI 444

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           IA   + GH  KA+ LF +M++   KPD VTF++LL+ACSH GLVD+G  F      VY 
Sbjct: 445 IAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYG 504

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I P  +HY CMVD+LGRAG L+E+  FI SMPI PD ++W +LL ACR H NV++ + A 
Sbjct: 505 IVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVAS 564

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           ++L E DP N G +VL++N+YAK G+ D +  +R  +R   L+K  G+S +E  G V  F
Sbjct: 565 QNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVF 624

Query: 542 TSGDIFNPHS--EEIYLMLNEIEMTLQQQG--------LQETSL--------QHRERLAV 583
            SG    PH   EEI   L+++   ++  G        LQ+            H ERLA+
Sbjct: 625 YSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAI 684

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFG+I+T   T + I  NLR+CGDCHS  K  S++  REI++RD  RFH F+ G CSC D
Sbjct: 685 AFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGD 744

Query: 644 YW 645
           +W
Sbjct: 745 FW 746



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 177/392 (45%), Gaps = 40/392 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G++ E  ++FD++P RDV +WN M+S         + + LL +M  EGV+ D VT+ S++
Sbjct: 116 GRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVL 175

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
                L D  +   +H++  +  +     + N L+D+Y K G + EA  + G   +   D
Sbjct: 176 PMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALR--D 233

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS-IGA 319
           +V W +++S   +  +   A  LF  M+E  +    L +  + +  A+     C   +GA
Sbjct: 234 LVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQ-----CGDELGA 288

Query: 320 LYHGIWVHVYIKKNQISIDN----------------IELAYDLFSEISEKNVYLWTSVIA 363
                 VH Y+++    + +                I+ A  +F  + +++V  W ++I 
Sbjct: 289 KS----VHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLIT 344

Query: 364 AYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDF--LSKKSRVY 420
            Y   G A +AI ++ +M    G KP Q TF+++L A S+ G + +G     LS K+   
Sbjct: 345 GYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKT--- 401

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            +   +    C++DL  + G L E+      MP       W++++     H +   A   
Sbjct: 402 GLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMP-RRSTGPWNAIIAGLGVHGHGAKALSL 460

Query: 481 FKHLTETDPLNDGAHVLLANIYAK---AGRLD 509
           F  + + +   D  HV   ++ A    AG +D
Sbjct: 461 FSQMQQEEIKPD--HVTFVSLLAACSHAGLVD 490



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 4/136 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCGKL E   LF+ +P R    WN +I+     G   + L L S+M  E + PD VT
Sbjct: 416 LYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVT 475

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            VSL++A +    ++ G++    L ++   I     +Y  +VDM  + G++ EA + +  
Sbjct: 476 FVSLLAACSHAGLVDQGRSF-FDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQS 534

Query: 254 YEIDEVDVVLWTTLVS 269
             I + D  +W  L+ 
Sbjct: 535 MPI-KPDSAVWGALLG 549



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 15/169 (8%)

Query: 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
           G  VH Y++  +++      AY +F E+ E++V  W ++++       A  A+ L   M 
Sbjct: 106 GSLVHAYLRFGRVA-----EAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM--QHYGC--MVDLLGR 438
             G   D VT  ++L  C     V  G   L+    VY +K  +  + + C  ++D+ G+
Sbjct: 161 GEGVAGDAVTLSSVLPMC-----VVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGK 215

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
            G L E+      M +  D+  W+S++ A      V  A   F  + E+
Sbjct: 216 LGMLTEAHWVFGGMAL-RDLVTWNSIISANEQGGKVAAAVELFHGMMES 263


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 308/537 (57%), Gaps = 42/537 (7%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMG-MYREGLGLLSKMGAEGVSPDEVTMVSL 199
           G + +  ++F+++P  +V+SW  +I+ Y   G   +E + L  KM +  + P+  +  S+
Sbjct: 103 GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 162

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A   L D   G+ ++ +  +  +     + N L+ MY + G++ +A+K      + E 
Sbjct: 163 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDI--LFEK 220

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           ++V +  +V GY K+ + +EA  LF+E+ +  +       + +L+          ASIGA
Sbjct: 221 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS--------GAASIGA 272

Query: 320 LYHGIWVHVYI-----KKNQ------ISI----DNIELAYDLFSEISEKNVYLWTSVIAA 364
           +  G  +H  +     K NQ      IS+     NIE A+ +F+E+ ++NV  WTS+I  
Sbjct: 273 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 332

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           +A  G A +A+++F +M ETGTKP+++T++A+LSACSH G++ EG    +   + + I P
Sbjct: 333 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 392

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +M+HY CMVDLLGR+G L E+  FI SMP+  D  +W +LL ACR H N +L  HA + +
Sbjct: 393 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 452

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P +  A++LL+N++A AG+  D+ +IR  +++  L K+ G S IE    VH+F  G
Sbjct: 453 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 512

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLI 588
           +  +P + +IY  L+++   +++ G                 ++   QH E++AVAFGLI
Sbjct: 513 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 572

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           STS+   IRI  NLR+CGDCH+ +K  S    REIV+RD+ RFH  + G CSC DYW
Sbjct: 573 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 166/361 (45%), Gaps = 35/361 (9%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FDK+P R++++W  MI+ +  +G  R+ + L   M   G  PD  T  S++SA T+L 
Sbjct: 6   KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 65

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC---GKIGEAQKLLGRYEIDEVDVVLW 264
            L +GK LH  +    + +   +   LVDMY KC   G + +++K+    ++ E +V+ W
Sbjct: 66  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF--EQMPEHNVMSW 123

Query: 265 TTLVSGYVKSNERD-EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
           T +++ Y +S E D EA  LF +M+  ++       S +L        K+C ++   Y G
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVL--------KACGNLSDPYTG 175

Query: 324 IWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMA 368
             V+ Y  K  I+  N               +E A   F  + EKN+  + +++  YA  
Sbjct: 176 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 235

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
             +++A  LF E+ +TG      TF +LLS  +  G + +G        R+     K   
Sbjct: 236 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI---HGRLLKGGYKSNQ 292

Query: 429 YGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
             C  ++ +  R G++E +      M    +V  W+S++     H     A   F  + E
Sbjct: 293 CICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKMLE 351

Query: 487 T 487
           T
Sbjct: 352 T 352



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 118/265 (44%), Gaps = 60/265 (22%)

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           AY +F ++ E+N+  WT +I  +A  G A+ AIDLFL+ME +G  PD+ T+ ++LSAC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQ-HYGC-MVDLLGRA---GHLEESANFITSMP---- 453
            GL+  G       SRV  +   +    GC +VD+  +    G +++S      MP    
Sbjct: 64  LGLLALGKQL---HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 120

Query: 454 -------------------------------IPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
                                          I P+   +SS+L+AC    +    E  + 
Sbjct: 121 MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 180

Query: 483 HLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL-GYSLIEQGGFVH 539
           +  +     +N   + L++ +YA++GR++D      K  D+  +K L  Y+ I       
Sbjct: 181 YAVKLGIASVNCVGNSLIS-MYARSGRMEDAR----KAFDILFEKNLVSYNAI------- 228

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMT 564
               G   N  SEE +L+ NEI  T
Sbjct: 229 --VDGYAKNLKSEEAFLLFNEIADT 251



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 51/212 (24%)

Query: 280 ARRLFDEMVERNLISWTLMISGMLN----QDA---------------EFKYKS----CAS 316
           A ++FD+M ERNL++WTLMI+        +DA                F Y S    C  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 317 IGALYHGIWVHVYIKKNQISID------------------NIELAYDLFSEISEKNVYLW 358
           +G L  G  +H  + +  +++D                  +++ +  +F ++ E NV  W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 359 TSVIAAYAMAGHAQK-AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           T++I AYA +G   K AI+LF +M     +P+  +F ++L AC  G L D    +  ++ 
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC--GNLSDP---YTGEQV 178

Query: 418 RVYNIKPKMQHYGC----MVDLLGRAGHLEES 445
             Y +K  +    C    ++ +  R+G +E++
Sbjct: 179 YSYAVKLGIASVNCVGNSLISMYARSGRMEDA 210



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 85/167 (50%), Gaps = 6/167 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G++++  + FD L  ++++S+N ++  Y       E   L +++   G+     T  S
Sbjct: 203 RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFAS 262

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+S    +  +  G+ +H  L +   K +  + N L+ MY +CG I  A ++    E+++
Sbjct: 263 LLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN--EMED 320

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMISG 301
            +V+ WT++++G+ K      A  +F +M+E     N I++  ++S 
Sbjct: 321 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 367



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG ++   Q+F+++ +R+VISW +MI+ +   G     L +  KM   G  P+E+T
Sbjct: 301 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 360

Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V+++SA + +  +  G K+ +   +E  +         +VD+  + G + EA + +   
Sbjct: 361 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 420

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            +   D ++W TL+ G  + +   E  R   EM+
Sbjct: 421 PL-MADALVWRTLL-GACRVHGNTELGRHAAEMI 452


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 308/537 (57%), Gaps = 42/537 (7%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMG-MYREGLGLLSKMGAEGVSPDEVTMVSL 199
           G + +  ++F+++P  +V+SW  +I+ Y   G   +E + L  KM +  + P+  +  S+
Sbjct: 108 GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 167

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A   L D   G+ ++ +  +  +     + N L+ MY + G++ +A+K      + E 
Sbjct: 168 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDI--LFEK 225

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           ++V +  +V GY K+ + +EA  LF+E+ +  +       + +L+          ASIGA
Sbjct: 226 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS--------GAASIGA 277

Query: 320 LYHGIWVHVYI-----KKNQ------ISI----DNIELAYDLFSEISEKNVYLWTSVIAA 364
           +  G  +H  +     K NQ      IS+     NIE A+ +F+E+ ++NV  WTS+I  
Sbjct: 278 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 337

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           +A  G A +A+++F +M ETGTKP+++T++A+LSACSH G++ EG    +   + + I P
Sbjct: 338 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 397

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +M+HY CMVDLLGR+G L E+  FI SMP+  D  +W +LL ACR H N +L  HA + +
Sbjct: 398 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 457

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P +  A++LL+N++A AG+  D+ +IR  +++  L K+ G S IE    VH+F  G
Sbjct: 458 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 517

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLI 588
           +  +P + +IY  L+++   +++ G                 ++   QH E++AVAFGLI
Sbjct: 518 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 577

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           STS+   IRI  NLR+CGDCH+ +K  S    REIV+RD+ RFH  + G CSC DYW
Sbjct: 578 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 166/361 (45%), Gaps = 35/361 (9%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FDK+P R++++W  MI+ +  +G  R+ + L   M   G  PD  T  S++SA T+L 
Sbjct: 11  KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 70

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC---GKIGEAQKLLGRYEIDEVDVVLW 264
            L +GK LH  +    + +   +   LVDMY KC   G + +++K+    ++ E +V+ W
Sbjct: 71  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF--EQMPEHNVMSW 128

Query: 265 TTLVSGYVKSNERD-EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
           T +++ Y +S E D EA  LF +M+  ++       S +L        K+C ++   Y G
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVL--------KACGNLSDPYTG 180

Query: 324 IWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMA 368
             V+ Y  K  I+  N               +E A   F  + EKN+  + +++  YA  
Sbjct: 181 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 240

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
             +++A  LF E+ +TG      TF +LLS  +  G + +G        R+     K   
Sbjct: 241 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI---HGRLLKGGYKSNQ 297

Query: 429 YGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
             C  ++ +  R G++E +      M    +V  W+S++     H     A   F  + E
Sbjct: 298 CICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKMLE 356

Query: 487 T 487
           T
Sbjct: 357 T 357



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 118/265 (44%), Gaps = 60/265 (22%)

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           AY +F ++ E+N+  WT +I  +A  G A+ AIDLFL+ME +G  PD+ T+ ++LSAC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQ-HYGC-MVDLLGRA---GHLEESANFITSMP---- 453
            GL+  G       SRV  +   +    GC +VD+  +    G +++S      MP    
Sbjct: 69  LGLLALGKQL---HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 125

Query: 454 -------------------------------IPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
                                          I P+   +SS+L+AC    +    E  + 
Sbjct: 126 MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 185

Query: 483 HLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL-GYSLIEQGGFVH 539
           +  +     +N   + L++ +YA++GR++D      K  D+  +K L  Y+ I       
Sbjct: 186 YAVKLGIASVNCVGNSLIS-MYARSGRMEDAR----KAFDILFEKNLVSYNAI------- 233

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMT 564
               G   N  SEE +L+ NEI  T
Sbjct: 234 --VDGYAKNLKSEEAFLLFNEIADT 256



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 51/212 (24%)

Query: 280 ARRLFDEMVERNLISWTLMISGMLN----QDA---------------EFKYKS----CAS 316
           A ++FD+M ERNL++WTLMI+        +DA                F Y S    C  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 317 IGALYHGIWVHVYIKKNQISID------------------NIELAYDLFSEISEKNVYLW 358
           +G L  G  +H  + +  +++D                  +++ +  +F ++ E NV  W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 359 TSVIAAYAMAGHAQK-AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           T++I AYA +G   K AI+LF +M     +P+  +F ++L AC  G L D    +  ++ 
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC--GNLSDP---YTGEQV 183

Query: 418 RVYNIKPKMQHYGC----MVDLLGRAGHLEES 445
             Y +K  +    C    ++ +  R+G +E++
Sbjct: 184 YSYAVKLGIASVNCVGNSLISMYARSGRMEDA 215



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 85/167 (50%), Gaps = 6/167 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G++++  + FD L  ++++S+N ++  Y       E   L +++   G+     T  S
Sbjct: 208 RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFAS 267

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+S    +  +  G+ +H  L +   K +  + N L+ MY +CG I  A ++    E+++
Sbjct: 268 LLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN--EMED 325

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMISG 301
            +V+ WT++++G+ K      A  +F +M+E     N I++  ++S 
Sbjct: 326 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 372



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG ++   Q+F+++ +R+VISW +MI+ +   G     L +  KM   G  P+E+T
Sbjct: 306 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 365

Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V+++SA + +  +  G K+ +   +E  +         +VD+  + G + EA + +   
Sbjct: 366 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 425

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            +   D ++W TL+ G  + +   E  R   EM+
Sbjct: 426 PL-MADALVWRTLL-GACRVHGNTELGRHAAEMI 457


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 194/582 (33%), Positives = 316/582 (54%), Gaps = 63/582 (10%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
            +I+ G EPE  +  S+I                        +  KC  +    ++FD+ 
Sbjct: 81  HVIKTGCEPEPFVQTSLIS-----------------------MYCKCSTIASARKVFDEN 117

Query: 154 PNRD--VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
            +     + +N +I+ Y+    + + + L  +M  EGVS + VTM+ LI        L  
Sbjct: 118 HHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGF 177

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           G +LH       +    S+ N L+ MY +CG +  A+KL     + E  ++ W  ++SGY
Sbjct: 178 GTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFD--GMPEKGLITWNAMISGY 235

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL----------- 320
            ++        L+ +M    ++   + + G+L+        SCA +GA            
Sbjct: 236 AQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLS--------SCAHLGAHAAGREVEQRIE 287

Query: 321 YHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
             G   + ++K   I++     N+  A  +F  ++EKNV  WT++IA Y M G  + A+ 
Sbjct: 288 LSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQ 347

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF EM  +   PD   F+++LSACSH GL ++G  + +   R Y ++P  +HY C+VDLL
Sbjct: 348 LFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLL 407

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG LEE+   I SM + PD ++W +LL AC+ H+NV+LAE AF+ + E +P N G +V
Sbjct: 408 GRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYV 467

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+NI+++AG ++ + R+R+ +R+  LKK+ G S +E  G +H F +GD  +P ++EIY 
Sbjct: 468 LLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYH 527

Query: 557 MLNEIEMTLQQQGLQETSLQ-------------HRERLAVAFGLISTSEKTTIRIVNNLR 603
           ML+ +E  ++++G    + Q             H E+LA+AFGLI+T   T I ++ NLR
Sbjct: 528 MLDGLEDIIKRRGGSNDNDQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLR 587

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +CGDCH F+K+ S++ +R++V+RD  RFH F+ G CSC+DYW
Sbjct: 588 VCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 151/343 (44%), Gaps = 11/343 (3%)

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SWN  +        ++E L L  +M A G SP+  T      +   L     G  LH  +
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
            ++  +    +   L+ MY KC  I  A+K+           V +  L++GY  ++   +
Sbjct: 83  IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142

Query: 280 ARRLFDEM----VERNLISWTLMI---SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
           A  LF +M    V  N ++   +I   +G ++        +C+    L   + V   +  
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLT 202

Query: 333 NQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
             +   +++ A  LF  + EK +  W ++I+ YA  G A   +DL+ +ME TG  PD VT
Sbjct: 203 MYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVT 262

Query: 393 FIALLSACSHGGLVDEGYDFLSK-KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
            + +LS+C+H G    G +   + +   +   P +++   ++++  R G+L ++      
Sbjct: 263 LVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDG 320

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
           M    +V  W++++     H   +LA   F  +  +D L DGA
Sbjct: 321 M-TEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGA 362


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 189/523 (36%), Positives = 296/523 (56%), Gaps = 59/523 (11%)

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
            LS +   G  P+  T V +  A      +  G+ + +   +  ++ +  + N ++ MY 
Sbjct: 19  FLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYA 78

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
             G + EA+++   + +D+ D+  W  ++ GYV S E   A+ +FDEM ER+++SWT +I
Sbjct: 79  NWGLVDEARRVF-DWSLDQ-DLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTII 136

Query: 300 SGMLN-------------------QDAEFKYKS----CASIGALYHGIWVHVYIKKNQIS 336
           +G +                       EF   S    CA++ AL  G W+HVYI K++I 
Sbjct: 137 AGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIK 196

Query: 337 IDNIELA--YDLFSEISEKN---------------VYLWTSVIAAYAMAGHAQKAIDLFL 379
           ++   LA   D++++  E +               V+ W ++I  YAM G +++AIDLF 
Sbjct: 197 MNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFE 256

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
           +M+     P++VTF+ALL+ACSHG LV+EG  +    +  Y I+P+++HYGCMVDLLGR+
Sbjct: 257 QMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRS 316

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499
           G L+E+   + +MP+ PD +IW +LL ACR H++++  +   K + E D  + G HVLLA
Sbjct: 317 GLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLA 376

Query: 500 NIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN 559
           N+Y+ +G+ D+   +R K+   G KK  G S IE  G  H+F  GD  +P ++++YL L+
Sbjct: 377 NLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLD 436

Query: 560 EIEMTLQQQGL----------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNL 602
           E+   L+  G                 +ET+L +H E+LA+AFGLI+T   T IRIV NL
Sbjct: 437 EMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNL 496

Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R+C DCH   K  S+VY REI++RD  R+H F+ G CSC+DYW
Sbjct: 497 RVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 142/295 (48%), Gaps = 34/295 (11%)

Query: 33  KFANVCPVSLDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
           + +   P     + V ++C +   + E E+I  H I   L  +  ++  +       G +
Sbjct: 24  RVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLV 83

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL 149
             A+++     + ++  WN      +I GY               V   + G+ KE   +
Sbjct: 84  DEARRVFDWSLDQDLYSWNI-----MIGGY---------------VGSGEIGRAKE---M 120

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FD++  RDV+SW T+I+ Y  +G ++E L L  +M   G  P+E T+ S ++A   L  L
Sbjct: 121 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVAL 180

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
           + G+ +H+++++S +K++  LL  L+DMY KCG+I  A K+       ++ V  W  ++ 
Sbjct: 181 DQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIG 240

Query: 270 GYVKSNERDEARRLFDEM----VERNLISWTLMIS----GMLNQDAEFKYKSCAS 316
           GY    +  EA  LF++M    V  N +++  +++    G L ++    +KS AS
Sbjct: 241 GYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMAS 295


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 182/534 (34%), Positives = 295/534 (55%), Gaps = 41/534 (7%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           +  V ++F+ +P +D++SWNT+I+     G+Y E L ++ +MG   + PD  T+ S++  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
             +  D+  GK +H       +     + + L+DMY KC ++ ++ ++     + E D +
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTL--LTERDGI 367

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            W ++++G V++   DE  + F +M+   +   +   S ++         +CA +  L+ 
Sbjct: 368 SWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIM--------PACAHLTTLHL 419

Query: 323 GIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H YI +N                    NI  A  +F  +  +++  WT++I   A+
Sbjct: 420 GKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCAL 479

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            GHA  AI+LF +M+  G +P+ V F+A+L+ACSH GLVDE + + +  +  + I P ++
Sbjct: 480 HGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVE 539

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HY  + DLLGRAG LEE+ +FI  MPI P  S+W++LL ACR H+NV +AE     + E 
Sbjct: 540 HYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEV 599

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           DP N GA++LLANIY+ A R  + ++ R  LR  G++K    S IE    V+ F +GD  
Sbjct: 600 DPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDES 659

Query: 548 NPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLISTS 591
           +P  E+I   +  +   ++++G + +TS                 H ERLA+ FG+I+T 
Sbjct: 660 HPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTP 719

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             TTIR+  NLR+C DCH+  K  S++  REIV+RDN RFH F+ G CSC DYW
Sbjct: 720 AGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 174/423 (41%), Gaps = 57/423 (13%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L +  +LF+ L     ++W ++I CYTS G+  + LG    M A G+ PD     S++ A
Sbjct: 58  LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKA 117

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA--QKLLGRYEIDEV- 259
              L DL +G++LH ++    +       N L++MY K   + ++  Q+L     +DE+ 
Sbjct: 118 CAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMT 177

Query: 260 ----DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
                V   + LV    +     EA         R   +  L I       +E++     
Sbjct: 178 ERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEID--YKPRSEYREMEAC 235

Query: 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           ++G     I        + +S+D++     +F  + EK++  W ++IA  A  G   + +
Sbjct: 236 NLGQQIKDI-------SHSMSVDSVR---KIFEMMPEKDLVSWNTIIAGNARNGLYGETL 285

Query: 376 DLFLEMEETGTKPDQVTFIALLSACS-----------HG-----GLVDEGY------DFL 413
            +  EM     KPD  T  ++L   +           HG     GL  E Y      D  
Sbjct: 286 TMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMY 345

Query: 414 SKKSRV---YNIKPKMQH-----YGCMVDLLGRAGHLEESANFITSM---PIPPDVSIWS 462
           +K +RV   Y +   +       +  ++    + G  +E   F   M    I P    +S
Sbjct: 346 AKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFS 405

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL--LANIYAKAGRLDDMSRI--RMKL 518
           S++ AC     + L +    ++T  +  ++   +   L ++YAK G +    +I  RM+L
Sbjct: 406 SIMPACAHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRL 464

Query: 519 RDM 521
           RDM
Sbjct: 465 RDM 467


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 187/518 (36%), Positives = 283/518 (54%), Gaps = 41/518 (7%)

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
            + +N ++S Y S     E + L  +M  EGV  + VT++ LI A     +LE+G +LH 
Sbjct: 117 TVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHC 176

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
              +       S++N  + MY KCG +  AQKL    E+    ++ W  +VSGY ++   
Sbjct: 177 STLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD--EMPVKGLISWNAMVSGYAQNGLA 234

Query: 278 DEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337
                L+  M    +    + + G+L+        SCA++GA   G  V   I+ +  + 
Sbjct: 235 TNVLELYRNMDMNGVHPDPVTLVGVLS--------SCANLGAQSVGHEVEFKIQASGFTS 286

Query: 338 D---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
           +               N+  A  +F  + E+ +  WT++I  Y M GH + A+ LF EM 
Sbjct: 287 NPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 346

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
            +G +PD   F+ +LSACSH GL D+G ++     R Y ++P  +HY CMVDLLGRAG L
Sbjct: 347 RSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRL 406

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           +E+   I SMPI PD ++W +LL AC+ H+NV+LAE AF+ + E +P N G +VLL+NIY
Sbjct: 407 KEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIY 466

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE 562
           + A     + RIR+ +++  LKK  G S +E  G VH F  GD  +  S+EIY +L E+E
Sbjct: 467 SNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELE 526

Query: 563 MTLQQQ---------------GLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
             + Q+               G     + H E+LAVAFGL++T+    + I+ NLRIC D
Sbjct: 527 AIIMQEFGKPEKDNREESNKDGFTRVGV-HSEKLAVAFGLLNTTTGAEVVIIKNLRICED 585

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CH F K+ S++ +R++ +RD  RFH F+ G CSC+DYW
Sbjct: 586 CHLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 32/264 (12%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +    +LFD++P + +ISWN M+S Y   G+    L L   M   GV PD VT+V 
Sbjct: 199 KCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVG 258

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++S+   L    +G  +   ++ S    +  L N L++MY +CG + +AQ +     + E
Sbjct: 259 VLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFD--GMPE 316

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF--KYKSCAS 316
             +V WT ++ GY      + A +LF EM+           SG+      F     +C+ 
Sbjct: 317 RTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR----------SGIEPDGTAFVCVLSACSH 366

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            G    G+     +K+N          Y L     E     ++ ++     AG  ++A  
Sbjct: 367 AGLTDQGLEYFKMMKRN----------YQL-----EPGPEHYSCMVDLLGRAGRLKEAQT 411

Query: 377 LFLEMEETGTKPDQVTFIALLSAC 400
           L   +E    KPD   + ALL AC
Sbjct: 412 L---IESMPIKPDGAVWGALLGAC 432


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 222/668 (33%), Positives = 326/668 (48%), Gaps = 129/668 (19%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+ L+    ++   IST++       GD+  ++    Q  + ++  WNS+I   + NG+
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 120 PQEVFAIYLYLV----------TRTVLLNKCGKL----KEVC------------------ 147
             E    +  L+          T   +L  CG L    K  C                  
Sbjct: 98  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLI 157

Query: 148 -------------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
                         LFD +P RD+ SWN MIS     G   + L +L +M  EG+  + V
Sbjct: 158 HMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFV 217

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T+VS+                               L   VDMY K G +  A K+   +
Sbjct: 218 TVVSI-------------------------------LPVFVDMYAKLGLLDSAHKV---F 243

Query: 255 EIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVE-----RNLISWTLMISGMLNQDAE 308
           EI  V DV+ W TL++GY ++    EA  ++  M E      N  +W  ++         
Sbjct: 244 EIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAY------ 297

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
                 A +GAL  G+ +H  + K  + +D                +  A  LF ++ ++
Sbjct: 298 ------AHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 351

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           +   W ++I+ + + GHA+K + LF EM + G KPD VTF++LLSACSH G V+EG  + 
Sbjct: 352 SSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG-KWC 410

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
            +  + Y IKP ++HYGCMVDLLGRAG+LE + +FI  MP+ PD SIW +LL ACR H N
Sbjct: 411 FRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGN 470

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
           ++L + A   L E D  N G +VLL+NIYA  G+ + + ++R   R+ GLKK  G+S IE
Sbjct: 471 IELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIE 530

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETS--------LQH 577
               V  F +G+  +P  +EIY  L  +   ++  G        LQ+            H
Sbjct: 531 VNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSH 590

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            ERLA+AFG+IST  K+ IRI  NLR+CGDCH+  K  S++  REIV+RD+ RFH F+ G
Sbjct: 591 SERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDG 650

Query: 638 QCSCRDYW 645
            CSC DYW
Sbjct: 651 ICSCGDYW 658


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 212/687 (30%), Positives = 333/687 (48%), Gaps = 98/687 (14%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITT-NLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97
           P +  ++ +   C ++   +++H+ +IT  N          +     F   L YA+ I  
Sbjct: 94  PSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKTIFH 153

Query: 98  QGDEPEIKIWNSIIENQLINGYPQEVFAIY------------------------------ 127
               P   ++NS+I     +  P E   +Y                              
Sbjct: 154 HLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWF 213

Query: 128 ----------------LYLVTRTVLLNKCGK-LKEVCQLFDKLPNRDVISWNTMISCYTS 170
                            Y+V+  + L   GK L    QLF+    RDV+SWN MI  Y  
Sbjct: 214 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 273

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
                    +  +M    V  D ++  ++I+    +  ++  K L   + E  +    S+
Sbjct: 274 HVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSM 329

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
           L   V    KCG + +A  L    E+   DVV W ++++ Y +  + +EA  LFD+M   
Sbjct: 330 LAGFV----KCGNVEDAFGLFS--EMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 383

Query: 291 NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI---------- 340
            +      +  +L+        +CA +GAL  G+ +H YI  N+I +++I          
Sbjct: 384 GVKPTEATVVSLLS--------ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 435

Query: 341 -----ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
                 LA  +F+ +  K+V  W ++IA  A+ G+ ++A  LF EM+E G +P+ +TF+A
Sbjct: 436 KCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVA 495

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           +LSACSH G+VDEG   L   S  Y I+PK++HYGC++DLL RAG LEE+   I +MP+ 
Sbjct: 496 ILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPME 555

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
           P+ S   +LL  CR H N +L E   K L    P + G ++LL+NIYA A + DD  ++R
Sbjct: 556 PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVR 615

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE------------- 562
             ++  G+ K  G S+IE  G VH+F +GD  +P S +IY  LNEI              
Sbjct: 616 NLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADT 675

Query: 563 ----MTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
               + ++++  +     H E+LA+A+GL+    K  IRIV NLR+C DCH  +K+ S+V
Sbjct: 676 GNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKV 735

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
           Y REI++RD  RFH F+ G+CSC D+W
Sbjct: 736 YGREIIVRDRNRFHHFEDGECSCLDFW 762


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 191/535 (35%), Positives = 300/535 (56%), Gaps = 58/535 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F  L   +V  WNT +  +       + + L  ++    +SPD  T   ++ A ++L D
Sbjct: 69  IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           +  GK +H ++E+  ++ +  L N +V +Y  CG+IG A+K+  +  + + DV+ W  ++
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDK--MPQRDVITWNIMI 186

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--------------QDAEFKYK-- 312
           +  VK  + + A +LF EM ERN+ SWT MI G                 +DA       
Sbjct: 187 ARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEV 246

Query: 313 -------SCASIGALYHGIWVHVYIKKN----QISIDN-----------IELAYDLFSEI 350
                  +CA +G L  G  +H +  ++     I + N           +E A  +F  +
Sbjct: 247 TVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNM 306

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            E+ V  W+++IA  A  G A+ A+ LF +M  TG KP+ VTFI +L ACSH G+V++G 
Sbjct: 307 EERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGR 366

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
            + +  +R Y I P+++HYGCMVDL  RAG L+E+  FI +MPI P+  +W +LL  C+ 
Sbjct: 367 KYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKV 426

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           H+NVKLAE A +HL++ DPLNDG +V+L+NIYA+AGR +D++R+R  +RD G  ++L   
Sbjct: 427 HKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGTWEKLLQR 486

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQHRERLAVAFGLIST 590
           +  +G           + P++  + L        +++   ++   +H E+LAV FGLI T
Sbjct: 487 MKLKG-----------YVPNTSVVLL-------DMEEDQKEKFLYRHSEKLAVVFGLIKT 528

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  T IRI+ NLR+C DCH+ +K+ S V  REIV+RD  RFH F+ G CSC DYW
Sbjct: 529 TPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 308/537 (57%), Gaps = 42/537 (7%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMG-MYREGLGLLSKMGAEGVSPDEVTMVSL 199
           G + +  ++F+++P  +V+SW  +I+ Y   G   +E + L  KM +  + P+  +  S+
Sbjct: 301 GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 360

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A   L D   G+ ++ +  +  +     + N L+ MY + G++ +A+K      + E 
Sbjct: 361 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDI--LFEK 418

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           ++V +  +V GY K+ + +EA  LF+E+ +  +       + +L+          ASIGA
Sbjct: 419 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS--------GAASIGA 470

Query: 320 LYHGIWVHVYI-----KKNQ------ISI----DNIELAYDLFSEISEKNVYLWTSVIAA 364
           +  G  +H  +     K NQ      IS+     NIE A+ +F+E+ ++NV  WTS+I  
Sbjct: 471 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 530

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           +A  G A +A+++F +M ETGTKP+++T++A+LSACSH G++ EG    +   + + I P
Sbjct: 531 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 590

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +M+HY CMVDLLGR+G L E+  FI SMP+  D  +W +LL ACR H N +L  HA + +
Sbjct: 591 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 650

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P +  A++LL+N++A AG+  D+ +IR  +++  L K+ G S IE    VH+F  G
Sbjct: 651 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 710

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLI 588
           +  +P + +IY  L+++   +++ G                 ++   QH E++AVAFGLI
Sbjct: 711 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 770

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           STS+   IRI  NLR+CGDCH+ +K  S    REIV+RD+ RFH  + G CSC DYW
Sbjct: 771 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 169/368 (45%), Gaps = 35/368 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L    ++FDK+P R++++W  MI+ +  +G  R+ + L   M   G  PD  T  S++
Sbjct: 197 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVL 256

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC---GKIGEAQKLLGRYEID 257
           SA T+L  L +GK LH  +    + +   +   LVDMY KC   G + +++K+    ++ 
Sbjct: 257 SACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF--EQMP 314

Query: 258 EVDVVLWTTLVSGYVKSNERD-EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
           E +V+ WT +++ YV+S E D EA  LF +M+  ++       S +L        K+C +
Sbjct: 315 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL--------KACGN 366

Query: 317 IGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSV 361
           +   Y G  V+ Y  K  I+  N               +E A   F  + EKN+  + ++
Sbjct: 367 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 426

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           +  YA    +++A  LF E+ +TG      TF +LLS  +  G + +G        R+  
Sbjct: 427 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI---HGRLLK 483

Query: 422 IKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
              K     C  ++ +  R G++E +      M    +V  W+S++     H     A  
Sbjct: 484 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALE 542

Query: 480 AFKHLTET 487
            F  + ET
Sbjct: 543 MFHKMLET 550



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 195/449 (43%), Gaps = 76/449 (16%)

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
           +G        L  M  +   PD  T   L+ +  + R+ ++GK +H  L +S +++   +
Sbjct: 22  VGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 81

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
           LN L+ +Y KCG   E  +L+     ++ D+V W+ +VS +  ++   +A   F +M+E 
Sbjct: 82  LNTLISLYSKCGDT-ETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 140

Query: 291 NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------------ 338
                    + ++   +   Y   A +G + +G  V     +  + +             
Sbjct: 141 GFYPNEYCFAAVIRACSNANY---AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 197

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           ++  AY +F ++ E+N+  WT +I  +A  G A+ AIDLFL+ME +G  PD+ T+ ++LS
Sbjct: 198 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 257

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQ-HYGC-MVDLLGRA---GHLEESANFITSMP 453
           AC+  GL+  G       SRV  +   +    GC +VD+  +    G +++S      MP
Sbjct: 258 ACTELGLLALGKQL---HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 314

Query: 454 -----------------------------------IPPDVSIWSSLLRACRCHQNVKLAE 478
                                              I P+   +SS+L+AC    +    E
Sbjct: 315 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 374

Query: 479 HAFKHLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL-GYSLIEQG 535
             + +  +     +N   + L++ +YA++GR++D      K  D+  +K L  Y+ I   
Sbjct: 375 QVYSYAVKLGIASVNCVGNSLIS-MYARSGRMEDAR----KAFDILFEKNLVSYNAI--- 426

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMT 564
                   G   N  SEE +L+ NEI  T
Sbjct: 427 ------VDGYAKNLKSEEAFLLFNEIADT 449



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 85/364 (23%)

Query: 130 LVTRTVLLNKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           L T   L +KCG  +    +F+ + N RD++SW+ M+SC+ +  M  + +     M   G
Sbjct: 82  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 141

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
             P+E    ++I A +      +G+ ++ F+ ++          YL              
Sbjct: 142 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKT---------GYL-------------- 178

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVK-SNERDEARRLFDEMVERNLISWTLMISGMLN--- 304
                    E DV +   L+  +VK S +   A ++FD+M ERNL++WTLMI+       
Sbjct: 179 ---------EADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC 229

Query: 305 -QDA---------------EFKYKS----CASIGALYHGIWVHVYIKKNQISID------ 338
            +DA                F Y S    C  +G L  G  +H  + +  +++D      
Sbjct: 230 ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 289

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK-AIDLFLEMEETG 385
                       +++ +  +F ++ E NV  WT++I AY  +G   K AI+LF +M    
Sbjct: 290 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGH 349

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC----MVDLLGRAGH 441
            +P+  +F ++L AC  G L D    +  ++   Y +K  +    C    ++ +  R+G 
Sbjct: 350 IRPNHFSFSSVLKAC--GNLSDP---YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGR 404

Query: 442 LEES 445
           +E++
Sbjct: 405 MEDA 408



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G++++  + FD L  ++++S+N ++  Y       E   L +++   G+     T  S
Sbjct: 401 RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFAS 460

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+S    +  +  G+ +H  L +   K +  + N L+ MY +CG I  A ++    E+++
Sbjct: 461 LLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN--EMED 518

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
            +V+ WT++++G+ K      A  +F +M+E
Sbjct: 519 RNVISWTSMITGFAKHGFATRALEMFHKMLE 549



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG ++   Q+F+++ +R+VISW +MI+ +   G     L +  KM   G  P+E+T
Sbjct: 499 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 558

Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V+++SA + +  +  G K+ +   +E  +         +VD+  + G + EA + +   
Sbjct: 559 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 618

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            +   D ++W TL+ G  + +   E  R   EM+
Sbjct: 619 PL-MADALVWRTLL-GACRVHGNTELGRHAAEMI 650


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 203/595 (34%), Positives = 322/595 (54%), Gaps = 53/595 (8%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKL--- 143
           G++G +  +    D  EI I  SI    L  G  +E        + +T L++  GKL   
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEES-------IVQTALVSMYGKLGHC 112

Query: 144 KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
            +   +F ++ +RDV++W+ M++ Y   G  RE LGL  +M  +GV+P++VT+VS + A 
Sbjct: 113 TDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDAC 172

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
             L DL  G  +H  +E   ++    +   LV++Y KCG+I  A +  G  +I E +VV 
Sbjct: 173 ASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFG--QIVEKNVVA 230

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
           W+ + + Y +++   +A R+   M    L+  +     +L+        +CA+I AL  G
Sbjct: 231 WSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLD--------ACAAIAALKQG 282

Query: 324 IWVH-------------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYA 366
             +H             VY+    +++     N+ LA D+F +I+  ++ LW S+IA  A
Sbjct: 283 RRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNA 342

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  +KA++LF  M   G +P  +TF ++L ACSH G++D+G          + I P+ 
Sbjct: 343 QHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEA 402

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+GCMVDLLGRAG + +S + +  MP  P    W + L ACR ++N+  A  A ++L +
Sbjct: 403 EHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQ 462

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            DP     +VLL+N+YAKAGR  D++R+R  ++     K+ G S IE    VH+F SGD+
Sbjct: 463 LDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDL 522

Query: 547 FNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLIST 590
            +P   EI+  L  +   +++ G + +T +                H E+LA+AF L++T
Sbjct: 523 DHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTT 582

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            E + IR+V NLR+C DCH+  K  S++ NREIV+RD  RFHRFQ G CSC DYW
Sbjct: 583 PEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 173/368 (47%), Gaps = 37/368 (10%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           ++ G +  V + FD++P  D++SWN +I+ Y     +         M  +G++P EV + 
Sbjct: 6   SQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGIS 65

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
             +SA T  R++ +G+++ L +  + ++    +   LV MY K G   +A  +  R  + 
Sbjct: 66  IFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLR--MS 123

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKS 313
             DVV W+ +V+ Y ++    EA  LF +M    V  N ++   ++SG+          +
Sbjct: 124 HRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVT---LVSGL---------DA 171

Query: 314 CASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLW 358
           CAS+G L  G  +H  ++   I                   IE A + F +I EKNV  W
Sbjct: 172 CASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAW 231

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           +++ AAYA     + AI +   M+  G  P+  TF+++L AC+    + +G   + ++++
Sbjct: 232 SAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRR-IHERTQ 290

Query: 419 VY--NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           V    ++  +     +V++  + G+L  + +    +    D+ +W+SL+     H   + 
Sbjct: 291 VLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIA-HLDLVLWNSLIATNAQHGQTEK 349

Query: 477 AEHAFKHL 484
           A   F+ +
Sbjct: 350 ALELFERM 357



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 148/360 (41%), Gaps = 48/360 (13%)

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMIS----------------GMLNQ----- 305
           ++S Y +       R+ FDEM   +++SW  +I+                GML Q     
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 306 ------------DA-EFKYKSCASIGALYHGIWVHVYIKKNQIS----IDNIELAYDLFS 348
                       DA E        +  L  GI     ++   +S    + +   A  +F 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            +S ++V  W++++AAYA  GH ++A+ LF +M+  G  P++VT ++ L AC+  G +  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA- 467
           G   + ++     I+  +     +V+L G+ G +E +      + +  +V  WS++  A 
Sbjct: 181 GA-LMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAAY 238

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI--RMKLRDMGLKK 525
            R  +N        +   E    N    V + +  A    L    RI  R ++   GL+ 
Sbjct: 239 ARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLES 298

Query: 526 QLGYSLIEQGGFVHK----FTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQHRERL 581
            + Y L        K      +GD+F+  +    ++ N +  T  Q G  E +L+  ER+
Sbjct: 299 DV-YVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERM 357


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 196/545 (35%), Positives = 301/545 (55%), Gaps = 54/545 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMV 197
           KC  +    ++FD++P R+++SWN+MI  +    +Y   +G+   +  E  V P+EV++ 
Sbjct: 292 KCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVS 351

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S++SA   +  L  G+ +H  + +  +     ++N L+DMYFKC    E  KL     + 
Sbjct: 352 SVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLF--QCVG 409

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCA 315
           + DVV W  LV G+V++++ +EA   F          W +   G+L  +A F     S A
Sbjct: 410 DRDVVTWNVLVMGFVQNDKFEEACNYF----------WVMRREGILPDEASFSTVLHSSA 459

Query: 316 SIGALYHGIWVH------VYIKKNQISIDNIEL---------AYDLFSEISEKNVYLWTS 360
           S+ AL+ G  +H       Y+K   I    I +         AY +F  I + NV  WT+
Sbjct: 460 SLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTA 519

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+AY + G A + I+LF  M   G +P  VTF+ +LSACSH G V+EG    +   +++
Sbjct: 520 MISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIH 579

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           ++ P  +HY CMVDLLGRAG L+E+  FI SMP+ P  S+W +LL ACR + N+K+   A
Sbjct: 580 DMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREA 639

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L E +P N G +VLLAN+  ++GRL++ + +R  +   G++K+ G S I+       
Sbjct: 640 AERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFV 699

Query: 541 FTSGDIFNPHSEEIYLML--------------------NEIEMTLQQQGLQETSLQHRER 580
           FT+ D  +  S+EIY ML                    N +E   ++QGL      H E+
Sbjct: 700 FTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGL----WYHSEK 755

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFGL++    + IRI  NLR CG CH+ MK+ S++++REI++RD  RFHRF  G CS
Sbjct: 756 LALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCS 815

Query: 641 CRDYW 645
           C DYW
Sbjct: 816 CGDYW 820



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 167/369 (45%), Gaps = 40/369 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           L  KCG L +   LF    +  + +++W ++I+  +   M+ + L L ++M   G  P++
Sbjct: 186 LYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQ 245

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T  S++SA      +  G+ LH  + +     +  +   LVDMY KC  +  A ++   
Sbjct: 246 FTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFD- 304

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLF-DEMVERNLISWTLMISGMLNQDAEFKYK 312
            ++ E ++V W +++ G+  +N  D A  +F D + E+ +I   + +S +L+        
Sbjct: 305 -QMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS-------- 355

Query: 313 SCASIGALYHGIWVH-VYIKKNQISIDNI--------------ELAYDLFSEISEKNVYL 357
           +CA++G L  G  VH V +K   + +  +              +    LF  + +++V  
Sbjct: 356 ACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 415

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLS 414
           W  ++  +      ++A + F  M   G  PD+ +F  +L + +    + +G   +D + 
Sbjct: 416 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 475

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH--- 471
           K   V N    M   G ++ +  + G L ++      +    +V  W++++ A + H   
Sbjct: 476 KLGYVKN----MCILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISAYQLHGCA 530

Query: 472 -QNVKLAEH 479
            Q ++L EH
Sbjct: 531 NQVIELFEH 539



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 24/227 (10%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L++   + R L+    +H  +  +       L N L+++Y KCG + +A  L        
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             +V WT+L++     N   +A  LF++M            S +L+  A       A++ 
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASA-------ATMM 260

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
            L HG  +H  I K+    +               ++  A  +F ++ E+N+  W S+I 
Sbjct: 261 VL-HGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIV 319

Query: 364 AYAMAGHAQKAIDLFLE-MEETGTKPDQVTFIALLSACSHGGLVDEG 409
            +       +A+ +F + + E    P++V+  ++LSAC++ G ++ G
Sbjct: 320 GFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG 366


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 301/564 (53%), Gaps = 72/564 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L +  +LFD +P+ D +S+NT++SC+ + G       + S M    V+    TMVS +
Sbjct: 55  GRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWN-TMVSGL 113

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           S    + + E        +  +    +    N +V      G +G A+ L  R   ++ D
Sbjct: 114 SKNGAIEEAEA-------MFRAMPARNAVSWNAMVAARASSGDMGAAENLF-RNAPEKTD 165

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKYKS--- 313
            +LWT +VSGY+ +    +A   F  M  RNL+SW  +++G +      DA   +K+   
Sbjct: 166 AILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVE 225

Query: 314 -----------------CASIGALYHGIWVHVYIKK----NQISID-----------NIE 341
                            C+++ AL  G  VH +  K      I++            +++
Sbjct: 226 DAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLD 285

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  LF E+  K++  W ++I+ YA  G  +KAI LF +M++ G  PD +T +A+L+AC 
Sbjct: 286 DACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACI 345

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GL D G          YNI+P++ HY CMVDLL RAG LE + N I SMP  P  S +
Sbjct: 346 HTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAY 405

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            +LL ACR ++N++ AE A + L E DP N GA+V LANIYA A R DD+SR+R  ++D 
Sbjct: 406 GTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDN 465

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNP--------------------HSEEIYLMLNEI 561
            + K  GYS +E  G  H+F S D  +P                    +S ++   L+++
Sbjct: 466 AVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDV 525

Query: 562 EMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
           E +L+ Q L    ++H E+LA+AFGLISTS   T+RI  NLRICGDCH+  K+ S++ +R
Sbjct: 526 EESLKSQML----MRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDR 581

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           EI++RD  RFH F+GG CSC DYW
Sbjct: 582 EIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 44/64 (68%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L + C+LFD++  +D+++WN MIS Y   G  R+ + L  KM  EGV PD +T+++
Sbjct: 280 KCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLA 339

Query: 199 LISA 202
           +++A
Sbjct: 340 VLTA 343


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 189/539 (35%), Positives = 299/539 (55%), Gaps = 46/539 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +     +FD++P+R+++SWN+MI  +    +Y   +G+  ++ + G  PD+V++ S
Sbjct: 247 KCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISS 304

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA   L +L+ GK +H  + +  +     + N LVDMY KCG   +A KL       +
Sbjct: 305 VLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGG--GD 362

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCAS 316
            DVV W  ++ G  +    ++A   F  M+            G+   +A +   + + AS
Sbjct: 363 RDVVTWNVMIMGCFRCRNFEQACTYFQAMIRE----------GVEPDEASYSSLFHASAS 412

Query: 317 IGALYHGIWVHVYI------KKNQISIDNIEL---------AYDLFSEISEKNVYLWTSV 361
           I AL  G  +H ++      K ++IS   + +         AY +F E  E NV  WT++
Sbjct: 413 IAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAM 472

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I  +   G A +AI LF EM   G  P+ +TF+++LSACSH G +D+G+ + +  + V+N
Sbjct: 473 ITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHN 532

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           IKP ++HY CMVDLLGR G LEE+  FI SMP  PD  +W +LL AC  H NV++     
Sbjct: 533 IKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVA 592

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           + L + +P N G ++LL+NIY + G L++   +R  +   G++K+ G S I+       F
Sbjct: 593 ERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVF 652

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------QETSLQ-HRERLAVAFG 586
            + D  +  ++EIY ML +++  ++++G               +E SL  H E+LA+AFG
Sbjct: 653 NANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGSEEQSLWCHSEKLALAFG 712

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           L+     + +RI  NLR CGDCH+ MK  S+++ REI++RD  RFHRF  G CSC DYW
Sbjct: 713 LLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 29/295 (9%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           T  +L  KCG +     LF+  P+   +V++W T+I+  +      + L   ++M   G+
Sbjct: 137 TLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGI 196

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            P+  T  +++ A      L  G+ +H  + +        +   L+DMY KCG +  A+ 
Sbjct: 197 YPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAEN 256

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           +    E+   ++V W +++ G+VK+     A  +F E++  +L    + IS +L+     
Sbjct: 257 VFD--EMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVL--SLGPDQVSISSVLS----- 307

Query: 310 KYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKN 354
              +CA +  L  G  VH           VY+K + + +       E A  LF    +++
Sbjct: 308 ---ACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRD 364

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           V  W  +I       + ++A   F  M   G +PD+ ++ +L  A +    + +G
Sbjct: 365 VVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQG 419



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 38/293 (12%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L++   KL+ L+    +H  L  +    S + +N L+ +Y KCG I     L   Y    
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +VV WTTL++   +SN+  +A   F+ M    +       S +L         +CA   
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAIL--------PACAHAA 214

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
            L  G  +H  I K+    D               ++ LA ++F E+  +N+  W S+I 
Sbjct: 215 LLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIV 274

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD-----EGYDFLSKKSR 418
            +       +AI +F E+   G  PDQV+  ++LSAC+  GLV+     + +  + K+  
Sbjct: 275 GFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACA--GLVELDFGKQVHGSIVKRGL 330

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC-RC 470
           V  +  K      +VD+  + G  E++           DV  W+ ++  C RC
Sbjct: 331 VGLVYVK----NSLVDMYCKCGLFEDATKLFCGGG-DRDVVTWNVMIMGCFRC 378



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 107/241 (44%), Gaps = 22/241 (9%)

Query: 91  YAQQIIRQGDEPEIKIWNSII----------ENQLINGYPQEVFAIYLYLVTRTV--LLN 138
           Y Q +IR+G EP+   ++S+           +  +I+ +  +   +    ++ ++  +  
Sbjct: 387 YFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYG 446

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +  Q+F +    +V+ W  MI+ +   G   E + L  +M  EGV P+ +T VS
Sbjct: 447 KCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVS 506

Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++SA +    ++ G K  +       +K        +VD+  + G++ EA + +      
Sbjct: 507 VLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPF- 565

Query: 258 EVDVVLWTTLVSGYVKSNE----RDEARRLF----DEMVERNLISWTLMISGMLNQDAEF 309
           E D ++W  L+    K       R+ A RLF    D      L+S   +  GML +  E 
Sbjct: 566 EPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEV 625

Query: 310 K 310
           +
Sbjct: 626 R 626



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 24/223 (10%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           S +++ +   IHSH++ T  +++ +IS+ +       G +  A Q+ R+  E  +  W +
Sbjct: 412 SIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTA 471

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTV---------LLNKC---GKLKEVCQLFDKLPNRD 157
           +I     +G   E   ++  ++   V         +L+ C   GK+ +  + F+ + N  
Sbjct: 472 MITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVH 531

Query: 158 VIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
            I      +  M+     +G   E    +  M  E   PD +   +L+ A  K  ++EMG
Sbjct: 532 NIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFE---PDSLVWGALLGACGKHANVEMG 588

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA---QKLLG 252
           + +   L +      G+ +  L ++Y + G + EA   ++L+G
Sbjct: 589 REVAERLFKLEPDNPGNYM-LLSNIYIRHGMLEEADEVRRLMG 630


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 187/542 (34%), Positives = 296/542 (54%), Gaps = 45/542 (8%)

Query: 139 KCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMY-REGLGLLSKMGAEGVSPDEV 194
           KC     +C   ++FD++ + +V SW  MI+ Y   G Y  E L L   M    V P+  
Sbjct: 318 KCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHF 377

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  S + A   L  L +G+ +     +        + N L+ MY + G+I +A+K     
Sbjct: 378 TFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI- 436

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + E +++ + T++  Y K+   +EA  LF+E+ ++ + +     + +L+          
Sbjct: 437 -LFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS--------GA 487

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
           ASIG +  G  +H  + K+ + ++               NIE A+ +F ++ ++NV  WT
Sbjct: 488 ASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWT 547

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           S+I  +A  G A +A++LF +M E G +P+ VT+IA+LSACSH GLV+EG+         
Sbjct: 548 SIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTE 607

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           + + P+M+HY CMVD+LGR+G L E+  FI SMP   D  +W + L ACR H N++L +H
Sbjct: 608 HGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKH 667

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A K + E +P +  A++LL+N+YA   + D++S IR  +++  L K+ G S +E    VH
Sbjct: 668 AAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVH 727

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAV 583
           KF  GD  +P + EIY  L  + + +++ G                 ++   QH E++AV
Sbjct: 728 KFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAV 787

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGLISTS+   IR+  NLRICGDCHS +K  S    REI++RD  RFH  + G+CSC +
Sbjct: 788 AFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNE 847

Query: 644 YW 645
           YW
Sbjct: 848 YW 849



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 166/370 (44%), Gaps = 41/370 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L    ++F+K+P R+ ++W  MI+     G   E + L  +M   G  PD  T+  +I
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVI 278

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC---GKIGEAQKLLGRYEID 257
           SA   +  L +G+ LH       + +   +   L++MY KC   G +  A+K+    +I 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFD--QIL 336

Query: 258 EVDVVLWTTLVSGYVKSNERD-EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
           + +V  WT +++GYV+    D EA  LF  M+  ++I      S  L        K+CA+
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTL--------KACAN 388

Query: 317 IGALYHGIWVHVYIKKNQIS------------------IDNIELAYDLFSEISEKNVYLW 358
           + AL  G  V  +  K   S                  ID+   A+D+   + EKN+  +
Sbjct: 389 LAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI---LFEKNLISY 445

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            +VI AYA   ++++A++LF E+E+ G      TF +LLS  +  G + +G       +R
Sbjct: 446 NTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQI---HAR 502

Query: 419 VYNIKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           V     K+    C  ++ +  R G++E +      M    +V  W+S++     H     
Sbjct: 503 VIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQ 561

Query: 477 AEHAFKHLTE 486
           A   F  + E
Sbjct: 562 ALELFHKMLE 571



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 119/526 (22%), Positives = 217/526 (41%), Gaps = 99/526 (18%)

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G   + +  L  M  +G  PD  T    +    + R  ++G  +H  L +S +++    L
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 232 NYLVDMYFKCGKIGEAQ---KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           N L+ +Y KCG+  +A    +L+G       D++ W+ +VS +  +N    A   F +M+
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSSR----DLISWSAMVSCFANNNMGFRALLTFVDMI 160

Query: 289 ERNLI--SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------- 338
           E       +    +      AEF      S+G    G  V     ++ + +         
Sbjct: 161 ENGYYPNEYCFAAATRACSTAEF-----VSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFV 215

Query: 339 ----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
               ++  A+ +F ++ E+N   WT +I      G+A +AIDLFLEM  +G +PD+ T  
Sbjct: 216 KGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLS 275

Query: 395 ALLSACSHGGLVDEGYDFLSKKSR------------VYNIKPKMQHYGCM---------- 432
            ++SAC++  L+  G    S+  R            + N+  K    G M          
Sbjct: 276 GVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI 335

Query: 433 ------------VDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLA 477
                          + + G+ EE+ +    M    + P+   +SS L+AC     +++ 
Sbjct: 336 LDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIG 395

Query: 478 EHAFKHLTET--DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           E  F H  +     +N  A+ L++ +YA++GR+DD      K  D+  +K    +LI   
Sbjct: 396 EQVFTHAVKLGFSSVNCVANSLIS-MYARSGRIDDAR----KAFDILFEK----NLISYN 446

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQHRERL--AVAFGLISTSEK 593
             +  +      N +SEE   + NEIE     QG+  ++      L  A + G I   E+
Sbjct: 447 TVIDAYAK----NLNSEEALELFNEIE----DQGMGASAFTFASLLSGAASIGTIGKGEQ 498

Query: 594 TTIRIV-NNLRI--------------CGDCHSFMKVTSQVYNREIV 624
              R++ + L++              CG+  S  +V   + +R ++
Sbjct: 499 IHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVI 544



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 32/289 (11%)

Query: 136 LLNKCGKLKEVCQLFDKL-PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
           L +KCG+ ++   +F  +  +RD+ISW+ M+SC+ +  M    L     M   G  P+E 
Sbjct: 110 LYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-LVDMYFKC-GKIGEAQKLLG 252
              +   A +    + +G ++  F+ ++    S   +   L+DM+ K  G +  A K+  
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
           +  + E + V WT +++  ++     EA  LF EM+          +SG+++        
Sbjct: 230 K--MPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVIS-------- 279

Query: 313 SCASIGALYHGIWVHVYIKKNQISID------------------NIELAYDLFSEISEKN 354
           +CA++  L  G  +H    ++ +++D                  ++  A  +F +I + N
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 355 VYLWTSVIAAYAM-AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           V+ WT++I  Y    G+ ++A+DLF  M  T   P+  TF + L AC++
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACAN 388



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG ++   Q+F+ + +R+VISW ++I+ +   G   + L L  KM  EGV P+ VT
Sbjct: 521 MYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVT 580

Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            ++++SA + +  +  G K+      E  +         +VD+  + G + EA + +   
Sbjct: 581 YIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSM 640

Query: 255 EIDEVDVVLWTTLVSG 270
              + D ++W T +  
Sbjct: 641 PY-KADALVWRTFLGA 655


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 226/699 (32%), Positives = 339/699 (48%), Gaps = 91/699 (13%)

Query: 8   PQLTETIFEPKLVRLGLVPKMRISRKF-ANVCPVSLDVIMVERSCSSIDEFERIHSHLIT 66
           P++T TI +    +    PK  +S  F     P     I +     +I +  +IH+ +I 
Sbjct: 51  PEITTTISKTSENK----PKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIII 106

Query: 67  TNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING-YPQEVFA 125
            NL     I+TQ+         + ++  +        +  +N++I     N  +   +F 
Sbjct: 107 HNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFH 166

Query: 126 IYLYLVT--RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
             L L +  +   L     LK +  LF                  T +GM    + L   
Sbjct: 167 FRLMLRSGIKPDRLTYPFVLKSMAGLFS-----------------TELGMAIHCMILRC- 208

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS---LLNYLVDMYFK 240
               G+  D    VSL+    K+  L  G    +F E      SGS   L N L+    K
Sbjct: 209 ----GIELDSFVRVSLVDMYVKVEKL--GSAFKVFDESPERFDSGSSALLWNVLIKGCCK 262

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
            G + +A KL     + + + V W+TL+ G+ K+ + D A  LFD+M E+N++SWT M+ 
Sbjct: 263 AGSMKKAVKLF--KAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVD 320

Query: 301 GM-LNQDAE----------------------FKYKSCASIGALYHGIWVHVYIKKNQISI 337
           G   N D+E                          +CA IG L  G+ +H YIK N + +
Sbjct: 321 GFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHL 380

Query: 338 D---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
                           NIE A ++F E  +K++  WT +I  +A+ GH+++AI  F +M 
Sbjct: 381 TEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMM 440

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
             G KPD+V F+ALL+AC H G VD G +F       Y I+P M+HY  +VD+LGR+G L
Sbjct: 441 FAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQL 500

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           +E+  FI  MP+ PD  IW +L  ACR H+  K+A+ A   L + +P + G ++ L+N Y
Sbjct: 501 KEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAY 560

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE 562
           A  G+ +D  R+R+ +++ G+ K  G+S IE  G VH+F SGD  +  S+ I L L EI 
Sbjct: 561 AALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIM 620

Query: 563 MTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICG 606
               +QG                 ++    H E+LA+AF LI TS   TIRIV NL++CG
Sbjct: 621 AGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCG 680

Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           DCHS MK  S++  REI++RD  RFH F+ G CSCRD+W
Sbjct: 681 DCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/552 (34%), Positives = 303/552 (54%), Gaps = 57/552 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F ++ N ++  +N +I C+++     +  G  ++M    + PD +T   LI A +++  
Sbjct: 73  IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           + +G+  H  +     +    + N LV MY  CG I  A ++ G+      DVV WT++V
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR--DVVSWTSMV 190

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA--------EFKYK-------- 312
           +GY K    + AR +FDEM  RNL +W++MI+G    +         EF  +        
Sbjct: 191 AGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANET 250

Query: 313 -------SCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEI 350
                  SCA +GAL  G   + Y+ K+ ++++               +IE A  +F  +
Sbjct: 251 VMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGL 310

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            E +   W+S+I   A+ GHA KA+  F +M   G  P  VTF A+LSACSHGGLV++G 
Sbjct: 311 PETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGL 370

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
           +      + + I+P+++HYGC+VD+LGRAG L E+ NFI  M + P+  I  +LL AC+ 
Sbjct: 371 EIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKI 430

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           ++N ++AE     L +  P + G +VLL+NIYA AG+ D +  +R  +++  +KK  G+S
Sbjct: 431 YKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWS 490

Query: 531 LIEQGGFVHKFTSG-DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETS 574
           LIE  G ++KFT G D  +P   +I     EI   ++  G                +E+S
Sbjct: 491 LIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESS 550

Query: 575 LQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
           +  H E+LA+A+G++ T   TTIRIV NLR+C DCH+  K+ S+VY RE+++RD  RFH 
Sbjct: 551 IHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHH 610

Query: 634 FQGGQCSCRDYW 645
           F+ G CSCRDYW
Sbjct: 611 FRNGVCSCRDYW 622



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 7/163 (4%)

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           AY +FS+I   N++++  +I  ++      KA   + +M ++   PD +TF  L+ A S 
Sbjct: 70  AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
              V  G    S+  R +  +  +     +V +    G +  +      M    DV  W+
Sbjct: 130 MECVLVGEQTHSQIVR-FGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGF-RDVVSWT 187

Query: 463 SLLRA-CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504
           S++   C+C     + E+A +   E    N     ++ N YAK
Sbjct: 188 SMVAGYCKC----GMVENAREMFDEMPHRNLFTWSIMINGYAK 226


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 318/603 (52%), Gaps = 62/603 (10%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQ----------EVFAIYLYLVTR----TVLLNKC 140
           +I+Q        +N+   + L++  P+          + F+I  +L       T L+N C
Sbjct: 9   VIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSC 68

Query: 141 ------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
                   +    QLF+ +P  D++ +N+M   Y+      + + L  K     + PD+ 
Sbjct: 69  TQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDY 128

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  SL+ A    +  + GK LH    +  +  +  +   L++MY  C  +  AQ++    
Sbjct: 129 TFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFD-- 186

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
           EI E  VV +  +++GY +S+  +EA  LF ++  R L    + +  +L+        SC
Sbjct: 187 EILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLS--------SC 238

Query: 315 ASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNVYLWT 359
           A +GAL  G W+H Y+KKN +          ID      +++ A  +F  +S ++   W+
Sbjct: 239 ALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWS 298

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I AYAM G  Q  + +F EM     +PD++TF+ LL ACSH GLVDEG+ +    S V
Sbjct: 299 AMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEV 358

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           Y I P ++HYGCMVDLLGRAG L E+  FI  +PI P   +W +LL +C  H N++LA+ 
Sbjct: 359 YGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQ 418

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
               + E D  + G +V+L+N+ A+AG+ +D+  +R  +   G  K  G S IE    VH
Sbjct: 419 VMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVH 478

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL----------------QHRERLA 582
           +F SGD  +  S  ++  L+E+   L+  G + +TSL                 H E+LA
Sbjct: 479 EFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLA 538

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           ++FGL++T   TTIR+V NLR+CGDCHS  K+ S + +REI++RD  RFH F+ G+CSC 
Sbjct: 539 ISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCG 598

Query: 643 DYW 645
           DYW
Sbjct: 599 DYW 601


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/544 (34%), Positives = 295/544 (54%), Gaps = 48/544 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + + C   +   ++F  +  ++V+SW  MI+ YT  G + +  GL  +MG EG+ PD   
Sbjct: 129 MYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFA 188

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S + A      L+ GK++H +   + ++    + N L++MY KCG + EA+ +     
Sbjct: 189 ITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFD--H 246

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLISWTLMISGMLNQDAEFKYK 312
           + + D + W TL+ GY +SN  +EA  LF+EM+     N ++   ++             
Sbjct: 247 VTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILP------------ 294

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYL 357
           + AS+ +L  G  +H Y  +     DN               + LA  LF  ++ KN+  
Sbjct: 295 AAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLIS 354

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           WT +IA Y M G  + AI LF +M+ +G +PD  +F A+L ACSH GL DEG+ F +   
Sbjct: 355 WTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMR 414

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             + I+PK++HY CMVDLL   G+L+E+  FI +MPI PD SIW SLLR CR H+NVKLA
Sbjct: 415 NEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLA 474

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E   + + E +P N G +VLLANIYA+A R + + +++ K+   GL++  G S IE  G 
Sbjct: 475 EKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGK 534

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQETSLQHRERL 581
            H F + +  +P    I   L+++   +Q++G                  E    H  +L
Sbjct: 535 AHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKL 594

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           AVAFG+++ S+   IR+  N R+C  CH   K  S++  REI++RD+ RFH F+ G+CSC
Sbjct: 595 AVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSC 654

Query: 642 RDYW 645
           R YW
Sbjct: 655 RGYW 658



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 131/278 (47%), Gaps = 26/278 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K  ++++   +FD++P RD+ISWN++I    S G+Y + + L  +M  EG   D  T++S
Sbjct: 31  KSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLS 90

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +     +G  +H +   + +    SL N L+DMY  C       K+     +++
Sbjct: 91  VMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIF--RNMEQ 148

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +VV WT +++ Y ++   D+   LF EM    +      I+  L+        + A   
Sbjct: 149 KNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALD--------AFAGNE 200

Query: 319 ALYHGIWVHVYIKKNQIS----IDN-----------IELAYDLFSEISEKNVYLWTSVIA 363
           +L HG  VH Y  +N I     + N           +E A  +F  +++K+   W ++I 
Sbjct: 201 SLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIG 260

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            Y+ +  A +A  LF EM     +P+ VT   +L A +
Sbjct: 261 GYSRSNLANEAFTLFNEM-LLQLRPNAVTMACILPAAA 297



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 118/294 (40%), Gaps = 53/294 (18%)

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-----SGMLNQDAEFKYK------- 312
             L+S Y KSN  ++A  +FDEM +R++ISW  +I     +G+ ++  E   +       
Sbjct: 23  NALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQE 82

Query: 313 -----------SCAS-----IGALYHGIWVHVYIKKNQISIDNIEL-----------AYD 345
                      +C       IG + HG  V   +  ++ S+ N  L              
Sbjct: 83  LDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGL-ISETSLGNALLDMYSNCSDWRSTNK 141

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  + +KNV  WT++I +Y  AGH  K   LF EM   G +PD     + L A +    
Sbjct: 142 IFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNES 201

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           +  G     K    Y I+  ++        ++++  + G++EE A FI       D   W
Sbjct: 202 LKHG-----KSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEE-ARFIFDHVTKKDTISW 255

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
           ++L+     +    LA  AF    E         V +A I   A  L  + R R
Sbjct: 256 NTLIGG---YSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSLERGR 306


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 196/545 (35%), Positives = 301/545 (55%), Gaps = 54/545 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMV 197
           KC  +    ++FD++P R+++SWN+MI  +    +Y   +G+   +  E  V P+EV++ 
Sbjct: 57  KCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVS 116

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S++SA   +  L  G+ +H  + +  +     ++N L+DMYFKC    E  KL     + 
Sbjct: 117 SVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLF--QCVG 174

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCA 315
           + DVV W  LV G+V++++ +EA   F          W +   G+L  +A F     S A
Sbjct: 175 DRDVVTWNVLVMGFVQNDKFEEACNYF----------WVMRREGILPDEASFSTVLHSSA 224

Query: 316 SIGALYHGIWVH------VYIKKNQISIDNIEL---------AYDLFSEISEKNVYLWTS 360
           S+ AL+ G  +H       Y+K   I    I +         AY +F  I + NV  WT+
Sbjct: 225 SLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTA 284

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+AY + G A + I+LF  M   G +P  VTF+ +LSACSH G V+EG    +   +++
Sbjct: 285 MISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIH 344

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           ++ P  +HY CMVDLLGRAG L+E+  FI SMP+ P  S+W +LL ACR + N+K+   A
Sbjct: 345 DMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREA 404

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L E +P N G +VLLAN+  ++GRL++ + +R  +   G++K+ G S I+       
Sbjct: 405 AERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFV 464

Query: 541 FTSGDIFNPHSEEIYLML--------------------NEIEMTLQQQGLQETSLQHRER 580
           FT+ D  +  S+EIY ML                    N +E   ++QGL      H E+
Sbjct: 465 FTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGL----WYHSEK 520

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFGL++    + IRI  NLR CG CH+ MK+ S++++REI++RD  RFHRF  G CS
Sbjct: 521 LALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCS 580

Query: 641 CRDYW 645
           C DYW
Sbjct: 581 CGDYW 585



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 140/316 (44%), Gaps = 32/316 (10%)

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M   G  P++ T  S++SA      +  G+ LH  + +     +  +   LVDMY KC  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF-DEMVERNLISWTLMISGM 302
           +  A ++    ++ E ++V W +++ G+  +N  D A  +F D + E+ +I   + +S +
Sbjct: 61  MHSAVRVFD--QMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSV 118

Query: 303 LNQDAEFKYKSCASIGALYHGIWVH-VYIKKNQISIDNI--------------ELAYDLF 347
           L+        +CA++G L  G  VH V +K   + +  +              +    LF
Sbjct: 119 LS--------ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLF 170

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             + +++V  W  ++  +      ++A + F  M   G  PD+ +F  +L + +    + 
Sbjct: 171 QCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALH 230

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           +G     +  ++  +K  M   G ++ +  + G L ++      +    +V  W++++ A
Sbjct: 231 QGTAIHDQIIKLGYVK-NMCILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISA 288

Query: 468 CRCH----QNVKLAEH 479
            + H    Q ++L EH
Sbjct: 289 YQLHGCANQVIELFEH 304


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 308/537 (57%), Gaps = 42/537 (7%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMG-MYREGLGLLSKMGAEGVSPDEVTMVSL 199
           G + +  ++F+++P  +V+SW  +I+ Y   G   +E + L  KM +  + P+  +  S+
Sbjct: 283 GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 342

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A   L D   G+ ++ +  +  +     + N L+ MY + G++ +A+K      + E 
Sbjct: 343 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDI--LFEK 400

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           ++V +  +V GY K+ + +EA  LF+E+ +  +       + +L+          ASIGA
Sbjct: 401 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS--------GAASIGA 452

Query: 320 LYHGIWVHVYI-----KKNQ------ISI----DNIELAYDLFSEISEKNVYLWTSVIAA 364
           +  G  +H  +     K NQ      IS+     NIE A+ +F+E+ ++NV  WTS+I  
Sbjct: 453 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 512

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           +A  G A +A+++F +M ETGTKP+++T++A+LSACSH G++ EG    +   + + I P
Sbjct: 513 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 572

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +M+HY CMVDLLGR+G L E+  FI SMP+  D  +W +LL ACR H N +L  HA + +
Sbjct: 573 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 632

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P +  A++LL+N++A AG+  D+ +IR  +++  L K+ G S IE    VH+F  G
Sbjct: 633 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 692

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLI 588
           +  +P + +IY  L+++   +++ G                 ++   QH E++AVAFGLI
Sbjct: 693 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 752

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           STS+   IRI  NLR+CGDCH+ +K  S    REIV+RD+ RFH  + G CSC DYW
Sbjct: 753 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 169/368 (45%), Gaps = 35/368 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L    ++FDK+P R++++W  MI+ +  +G  R+ + L   M   G  PD  T  S++
Sbjct: 179 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVL 238

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC---GKIGEAQKLLGRYEID 257
           SA T+L  L +GK LH  +    + +   +   LVDMY KC   G + +++K+    ++ 
Sbjct: 239 SACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF--EQMP 296

Query: 258 EVDVVLWTTLVSGYVKSNERD-EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
           E +V+ WT +++ YV+S E D EA  LF +M+  ++       S +L        K+C +
Sbjct: 297 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL--------KACGN 348

Query: 317 IGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSV 361
           +   Y G  V+ Y  K  I+  N               +E A   F  + EKN+  + ++
Sbjct: 349 LSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAI 408

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           +  YA    +++A  LF E+ +TG      TF +LLS  +  G + +G        R+  
Sbjct: 409 VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI---HGRLLK 465

Query: 422 IKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
              K     C  ++ +  R G++E +      M    +V  W+S++     H     A  
Sbjct: 466 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALE 524

Query: 480 AFKHLTET 487
            F  + ET
Sbjct: 525 MFHKMLET 532



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 195/449 (43%), Gaps = 76/449 (16%)

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
           +G        L  M  +   PD  T   L+ +  + R+ ++GK +H  L +S +++   +
Sbjct: 4   VGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 63

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
           LN L+ +Y KCG   E  +L+     ++ D+V W+ +VS +  ++   +A   F +M+E 
Sbjct: 64  LNTLISLYSKCGDT-ETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 122

Query: 291 NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------------ 338
                    + ++   +   Y   A +G + +G  V     +  + +             
Sbjct: 123 GFYPNEYCFAAVIRACSNANY---AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 179

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           ++  AY +F ++ E+N+  WT +I  +A  G A+ AIDLFL+ME +G  PD+ T+ ++LS
Sbjct: 180 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 239

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQ-HYGC-MVDLLGRA---GHLEESANFITSMP 453
           AC+  GL+  G       SRV  +   +    GC +VD+  +    G +++S      MP
Sbjct: 240 ACTELGLLALGKQL---HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 296

Query: 454 -----------------------------------IPPDVSIWSSLLRACRCHQNVKLAE 478
                                              I P+   +SS+L+AC    +    E
Sbjct: 297 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 356

Query: 479 HAFKHLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL-GYSLIEQG 535
             + +  +     +N   + L++ +YA++GR++D      K  D+  +K L  Y+ I   
Sbjct: 357 QVYSYAVKLGIASVNCVGNSLIS-MYARSGRMEDAR----KAFDILFEKNLVSYNAI--- 408

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMT 564
                   G   N  SEE +L+ NEI  T
Sbjct: 409 ------VDGYAKNLKSEEAFLLFNEIADT 431



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 85/364 (23%)

Query: 130 LVTRTVLLNKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           L T   L +KCG  +    +F+ + N RD++SW+ M+SC+ +  M  + +     M   G
Sbjct: 64  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 123

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
             P+E    ++I A +      +G+ ++ F+ ++          YL              
Sbjct: 124 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKT---------GYL-------------- 160

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVK-SNERDEARRLFDEMVERNLISWTLMISGMLN--- 304
                    E DV +   L+  +VK S +   A ++FD+M ERNL++WTLMI+       
Sbjct: 161 ---------EADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC 211

Query: 305 -QDA---------------EFKYKS----CASIGALYHGIWVHVYIKKNQISID------ 338
            +DA                F Y S    C  +G L  G  +H  + +  +++D      
Sbjct: 212 ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 271

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK-AIDLFLEMEETG 385
                       +++ +  +F ++ E NV  WT++I AY  +G   K AI+LF +M    
Sbjct: 272 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGH 331

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC----MVDLLGRAGH 441
            +P+  +F ++L AC  G L D    +  ++   Y +K  +    C    ++ +  R+G 
Sbjct: 332 IRPNHFSFSSVLKAC--GNLSDP---YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGR 386

Query: 442 LEES 445
           +E++
Sbjct: 387 MEDA 390



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G++++  + FD L  ++++S+N ++  Y       E   L +++   G+     T  S
Sbjct: 383 RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFAS 442

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+S    +  +  G+ +H  L +   K +  + N L+ MY +CG I  A ++    E+++
Sbjct: 443 LLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN--EMED 500

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
            +V+ WT++++G+ K      A  +F +M+E
Sbjct: 501 RNVISWTSMITGFAKHGFATRALEMFHKMLE 531



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG ++   Q+F+++ +R+VISW +MI+ +   G     L +  KM   G  P+E+T
Sbjct: 481 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 540

Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V+++SA + +  +  G K+ +   +E  +         +VD+  + G + EA + +   
Sbjct: 541 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 600

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            +   D ++W TL+ G  + +   E  R   EM+
Sbjct: 601 PL-MADALVWRTLL-GACRVHGNTELGRHAAEMI 632


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 188/559 (33%), Positives = 298/559 (53%), Gaps = 68/559 (12%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F ++   +   W  MI  Y   G+  E     ++M  +GV P   T  +L  A     +
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 209 LEMGKNLHLFLEESTMKISG-----SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
           +++GK +H      T+ I G      + N ++D+Y KCG +G A+K+    E+ E DVV 
Sbjct: 158 MDLGKQVH----AQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFD--EMSERDVVS 211

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--------------QDAEF 309
           WT L+  Y K  + + A  LFD++  +++++WT M++G                 QD   
Sbjct: 212 WTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGM 271

Query: 310 K---------YKSCASIGALYHGIWVHVYIKKNQIS-----------ID------NIELA 343
           +           +CA +GA+ H  W+    +++              ID      + + A
Sbjct: 272 ETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEA 331

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
           Y +F  + E+NV+ ++S+I  YAM G A  A+ LF +M +T  +P++VTFI +LSACSH 
Sbjct: 332 YKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHA 391

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GLV++G    +K  + + + P   HY CMVDLLGRAG LEE+ + + +MP+ P+  +W +
Sbjct: 392 GLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGA 451

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL ACR H N  +A+ A   L + +P   G ++LL+NIYA AGR +++S++R  +R+ G 
Sbjct: 452 LLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGF 511

Query: 524 KKQLGYSLIE-QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQET--------- 573
           KK  G S  E + G +H F +GD  +P S EI   L ++   L+  G +           
Sbjct: 512 KKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLT 571

Query: 574 -------SLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                   + H E+LA+A+GL+ T    TI+I+ N+RIC DCH+ M   S++  REI++R
Sbjct: 572 DDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVR 631

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           DN RFH F  G CSC ++W
Sbjct: 632 DNMRFHHFHNGTCSCGNFW 650



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 39/233 (16%)

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K +H  +  + +     +L  L+ M  K      +  LL   +++  +  LWT ++ GY 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGM-------LNQD-AEFKYKSCASIGALYHGI 324
                 E+   +  M    +   +   S +       LN D  +  +     IG     +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 325 WV-----HVYIK----------------KNQISIDNIELAY----------DLFSEISEK 353
           +V      +Y+K                ++ +S   + +AY           LF ++  K
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSK 238

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           ++  WT+++  YA  G  ++A++ F +M++ G + D+VT   ++SAC+  G V
Sbjct: 239 DMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAV 291


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 204/655 (31%), Positives = 325/655 (49%), Gaps = 79/655 (12%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           +SC +      +H+  + + L  DP +++ +    +  G  G A+ +  +  E  +  W+
Sbjct: 28  KSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWS 87

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
           ++I      G  +  + +   + +  V  N                   VI+WN ++S  
Sbjct: 88  ALIAGYSARGDAEAAWGLLEQMRSAGVEPN-------------------VITWNGLVSGL 128

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
              G   + +  L +M +EG  PD   +   +SA   ++++ +GK +H ++ ++  ++  
Sbjct: 129 NRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDA 188

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM- 287
            ++  L+DMY KCG+  E  ++   +E   +DV     LV+G  ++ +  EA  LF E  
Sbjct: 189 CVVTALIDMYGKCGRADEIVRVF--HESSHMDVASCNALVAGLSRNAQVSEALLLFREFI 246

Query: 288 ---VERNLISWTLMISGMLNQDAEFK----YKSCASIG-------------------ALY 321
              VE N++SWT +++  +    + +    +++  SIG                   AL 
Sbjct: 247 CRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALM 306

Query: 322 HGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYA 366
           HG   H           VY+    + +         A  +F  +  +NV  W ++I  YA
Sbjct: 307 HGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYA 366

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
           M G A  A+ LF  M++   KPD VTF  +L ACS  GL +EG  + ++  + + I P+M
Sbjct: 367 MHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRM 426

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HY CMV LLGR+G L+E+ + I  MP  PD  IW SLL +CR + NV LAE A + L +
Sbjct: 427 EHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQ 486

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            +P N G +VLL+NIYA     D ++R+R ++++MGLKK+ G S IE    VH   +GD 
Sbjct: 487 LEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDN 546

Query: 547 FNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQ--------HRERLAVAFGLIST 590
            +P    I   LN++ + + + G        L +   Q        H E+LAVA GLIST
Sbjct: 547 SHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLIST 606

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              T +R++ NLRICGDCH  MK  S    REI +RD  RFH F+ G+CSC DYW
Sbjct: 607 RPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 208/594 (35%), Positives = 310/594 (52%), Gaps = 72/594 (12%)

Query: 115 LINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
           L+NG  Q  + +   + T T L            +F+++   +   +N +I  Y      
Sbjct: 70  LLNGLDQSCYVLAKLIRTLTKLNIPVDPYP--LSIFNQVNYPNPFLYNALIRGYLIEERL 127

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG-----S 229
           +E     S M  EGV P   T  +L  A     D+ +G+ +H      T+ + G      
Sbjct: 128 KESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIH----GQTILVGGFGEDLH 183

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           + N ++DMY KCG +   +K+    E+   DV+ WT L+S YVKS   + A  LFD +  
Sbjct: 184 VGNSMIDMYIKCGFLECGRKVFD--EMPNRDVISWTELISAYVKSGNMESAGELFDGLPV 241

Query: 290 RNLISWTLMISGMLNQDA-------------EFKYKS-----------CASIGALYHGIW 325
           +++++WT+M+SG   Q+A             EF  ++           CA +GA  +  W
Sbjct: 242 KDMVAWTVMVSG-FAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADW 300

Query: 326 VHVYIKKNQIS-----------ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
           +    +K++             ID      ++  AY +F  + E+NVY ++S+I  +AM 
Sbjct: 301 IRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMH 360

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G    A+ LF EM +T  KP++VTFI +L+ACSH G+V++G+       + Y IKP   H
Sbjct: 361 GRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADH 420

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           Y CMVDLLGRAG L+E+   + +MPI P   +W +LL ACR H++  +A  A  HL E +
Sbjct: 421 YTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELE 480

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE-QGGFVHKFTSGDIF 547
           P   G ++LLANIYA  GR +D+S +R  +R  GL+K   +S IE + G VH+F SGD+ 
Sbjct: 481 PYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMT 540

Query: 548 NPHSEEIYLMLNEIEMTLQQQGLQ----------------ETSLQHRERLAVAFGLISTS 591
           +P S EI   L ++   L+ +G Q                   + H E+LA+AFGLIST 
Sbjct: 541 HPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTI 600

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             + IRIV NLRIC DCHS +   SQ+  REI++RD  RFH F  G CSC ++W
Sbjct: 601 PGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/599 (32%), Positives = 325/599 (54%), Gaps = 55/599 (9%)

Query: 91  YAQQIIRQGDEPEIKIWNSIIE-----NQLINGYPQEVFAIYLYLVTRTVLLN------- 138
           +  +++R G +P+     S+         L+NG     +AI   L + T + N       
Sbjct: 353 FISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYM 412

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  ++    +FD++  +D ISW T+I+CY     + E L +  +   EG+  D + + S
Sbjct: 413 KCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGS 472

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A + L  + + K LH +   + + +   + N ++D+Y +CG++  + K+     +++
Sbjct: 473 ILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMF--ETVEQ 529

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D+V WT++++ Y  S   +EA  LF EM   ++   ++ +  +L         +   + 
Sbjct: 530 KDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILG--------AIGGLS 581

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           +L  G  VH ++ +    ++               ++  A  +F+ +  K++ LWT++I 
Sbjct: 582 SLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMIN 641

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           A  M GH ++AIDLF  M +TG  PD V+F+ALL ACSH  LV+EG  +L      Y ++
Sbjct: 642 ATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLE 701

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P  +HY C+VDLLGR+G  EE+  FI SMP+ P   +W SLL ACR H+N +LA  A   
Sbjct: 702 PWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANR 761

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L E +P N G +VL++N++A+ G+ ++   +R ++ + GL+K    S IE G  VH FT+
Sbjct: 762 LLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTT 821

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG---------LQETSLQ--------HRERLAVAFG 586
            D  +  +E I L L EI   L+++G         L + S +        H ERLA++FG
Sbjct: 822 RDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFG 881

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LI+T     +RI  NLR+CGDCH F K+ S++++R+IV+RD  RFH F GG CSC D+W
Sbjct: 882 LINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 185/389 (47%), Gaps = 39/389 (10%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
           V+  KCG++    ++F ++  +D ISWN+M+SCY   G+Y E +  +S+M   G  PD  
Sbjct: 308 VMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHA 367

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            +VSL SA   L  L  GK +H +  +  +     + N L+DMY KC  I  +  +  R 
Sbjct: 368 CIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRM 427

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            I   D + WTT+++ Y +S+   EA  +F E  +  +    +MI  +L        ++C
Sbjct: 428 RIK--DHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSIL--------EAC 477

Query: 315 ASIGALYHGIWVHVY---------IKKNQI-----SIDNIELAYDLFSEISEKNVYLWTS 360
           + +  +     +H Y         + KN+I         +  +  +F  + +K++  WTS
Sbjct: 478 SGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTS 537

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD-----EGYDFLSK 415
           +I  YA +G   +A+ LF EM+ T  +PD V  +++L A   GGL       E + FL +
Sbjct: 538 MINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAI--GGLSSLAKGKEVHGFLIR 595

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
           +    N   +      +VD+    G L  +     ++    D+ +W++++ A   H + K
Sbjct: 596 R----NFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKC-KDMVLWTAMINATGMHGHGK 650

Query: 476 LAEHAFKHLTETDPLNDGAHV-LLANIYA 503
            A   FK + +T    D  HV  LA +YA
Sbjct: 651 QAIDLFKRMLQTGVTPD--HVSFLALLYA 677



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 180/394 (45%), Gaps = 45/394 (11%)

Query: 129 YLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--- 184
           +L T+ + +  KCG++ +   LFD + +R V SWN +I  Y S G   E LG+   M   
Sbjct: 96  FLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLS 155

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
            A GV+PD  T+ S++ A     D   G  +H    +  +  S  + N L+ MY KCG +
Sbjct: 156 AASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGIL 215

Query: 245 GEAQKLLGRYEI--DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
             A ++   +E+  D  DV  W +++SG +++    +A  LF  M    L   +    G+
Sbjct: 216 DSAMRV---FELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGV 272

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--------------NIELAYDLFS 348
           L        + C  +  L  G  +H  + K+   ++               ++ A  +F 
Sbjct: 273 L--------QVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFR 324

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           EI EK+   W S+++ Y   G   +AI+   EM   G +PD    ++L SA  H G +  
Sbjct: 325 EIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLN 384

Query: 409 GYDFLSKKSRVYNIKPKM----QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           G     K+   Y IK ++    Q    ++D+  +  ++E SA+    M I   +S W+++
Sbjct: 385 G-----KEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHIS-WTTI 438

Query: 465 L----RACRCHQNVKLAEHAFKHLTETDPLNDGA 494
           +    ++ R  + +++   A K   + DP+  G+
Sbjct: 439 ITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGS 472



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 177/397 (44%), Gaps = 44/397 (11%)

Query: 139 KCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           KCG L    ++F+ + + RDV SWN+MIS     GM+ + L L   M    +S +  T V
Sbjct: 211 KCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTV 270

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            ++   T+L  L +G+ LH  L +S  +++    N L+ MY KCG++  A ++    EID
Sbjct: 271 GVLQVCTELAQLNLGRELHAALLKSGSEVNIQ-CNALLVMYTKCGRVDSALRVF--REID 327

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           E D + W +++S YV++    EA     EM+          I  +          +   +
Sbjct: 328 EKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSL--------SSAVGHL 379

Query: 318 GALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVI 362
           G L +G  VH Y  K ++  D                IE +  +F  +  K+   WT++I
Sbjct: 380 GWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTII 439

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             YA +    +A+++F E ++ G K D +   ++L ACS    +      L+K+   Y I
Sbjct: 440 TCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETI-----LLAKQLHCYAI 494

Query: 423 KPKMQHY---GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           +  +        ++D+ G  G +  S     ++    D+  W+S++    C+ N  L   
Sbjct: 495 RNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVE-QKDIVTWTSMI---NCYANSGLLNE 550

Query: 480 A---FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           A   F  +  TD   D   V L +I    G L  +++
Sbjct: 551 ALVLFAEMQSTDVQPDS--VALVSILGAIGGLSSLAK 585


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 196/553 (35%), Positives = 291/553 (52%), Gaps = 67/553 (12%)

Query: 154 PNRDVISWNTMISCYTSMGM----YREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           PN +   WN +I   T   +    +   L L  +M    V PD  T   L+ +   +   
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS---INTP 76

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
             G+ LH  +    +     +   L++MY  CG    A++     EI + D+  W  ++ 
Sbjct: 77  HRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFD--EITQPDLPSWNAIIH 134

Query: 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----------------------QDA 307
              K+     AR+LFD+M E+N+ISW+ MI G ++                      +  
Sbjct: 135 ANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPN 194

Query: 308 EFKYKS----CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
           EF   S    CA +GAL HG WVH YI K  + ID               +IE A  +F 
Sbjct: 195 EFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFD 254

Query: 349 EI-SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
            +  EK+V  W+++I A++M G +++ ++LF  M   G +P+ VTF+A+L AC HGGLV 
Sbjct: 255 NLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVS 314

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG ++  +    Y + P +QHYGCMVDL  RAG +E++ N + SMP+ PDV IW +LL  
Sbjct: 315 EGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNG 374

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
            R H +V+  E A   L E DP N  A+VLL+N+YAK GR  ++  +R  +   G+KK  
Sbjct: 375 ARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLP 434

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------- 576
           G SL+E  G + +F +GD  +P    +Y+ML+EI   L++ G +  + +           
Sbjct: 435 GCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKE 494

Query: 577 -----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
                H E+LA+A+  + TS  TTIRIV NLRIC DCH  +K+ S+ +NREI++RD  RF
Sbjct: 495 FALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRF 554

Query: 632 HRFQGGQCSCRDY 644
           H F+ G CSC+DY
Sbjct: 555 HHFKNGLCSCKDY 567



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 159/348 (45%), Gaps = 49/348 (14%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++H+ ++   L  DP + T +       G   +A+Q   +  +P++  WN+II       
Sbjct: 81  QLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHAN---- 136

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                               K G +    +LFD++P ++VISW+ MI  Y S G Y+  L
Sbjct: 137 -------------------AKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAAL 177

Query: 179 GL---LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
            L   L  +    + P+E TM S++SA  +L  L+ GK +H +++++ MKI   L   L+
Sbjct: 178 SLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLI 237

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERN 291
           DMY KCG I  A+ +       E DV+ W+ +++ +      +E   LF  M    V  N
Sbjct: 238 DMYAKCGSIERAKCIFDNLG-PEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPN 296

Query: 292 LISWTLMI-----SGMLNQDAEFKYKSCASIGA----LYHGIWVHVYIKKNQISIDNIEL 342
            +++  ++      G++++  E+  +     G      ++G  V +Y +  +     IE 
Sbjct: 297 AVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGR-----IED 351

Query: 343 AYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQK---AIDLFLEMEETGT 386
           A+++   +  E +V +W +++    + G  +    AI   LE++   +
Sbjct: 352 AWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANS 399


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/548 (32%), Positives = 300/548 (54%), Gaps = 43/548 (7%)

Query: 130 LVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           L +   L  +CG L    ++FD++P+   +SW  +I+ Y   G  RE + +     A G+
Sbjct: 156 LTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGM 215

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            PD  T V +++A  ++ DL  G+ +    E+  +  S  +    VD+Y KCG++ +A++
Sbjct: 216 RPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKARE 275

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           +  +  + + D V W  +V GY  +    EA  LF  M    +      ++G L+     
Sbjct: 276 VFDK--MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALS----- 328

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSEISEK 353
              +C  +GAL  G      +  ++  +DN  L                A+ +F ++ +K
Sbjct: 329 ---ACTRLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKK 384

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           ++ +W ++I    M GH + A  L  +ME++G K +  TFI LL +C+H GL+ +G  + 
Sbjct: 385 DIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYF 444

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
              +++Y+I P+++HYGC+VDLL RAG L+E+   I  MP+P +  I  +LL  C+ H+N
Sbjct: 445 HNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRN 504

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
            +LAEH    L   +P N G +V+L+NIY+  GR +D +++R+ +++ G++K    S +E
Sbjct: 505 AELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVE 564

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQH 577
             G VH+F  GD  +P S++IY  L+E+ + ++  G + T+                + H
Sbjct: 565 FEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHH 624

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            E+LA+AF L+ T    TIR+  NLR+C DCH+ +K+ S++ +REI++RDN RFH F+ G
Sbjct: 625 SEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDG 684

Query: 638 QCSCRDYW 645
            CSC DYW
Sbjct: 685 SCSCNDYW 692



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 12/229 (5%)

Query: 190 SPDEVTM-VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           +P  +T  ++L SA      L  G+ LH    +     +  +L  L+ +Y +CG +  AQ
Sbjct: 114 NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 173

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDE----ARRLFDEMVERNLISWTLMISGMLN 304
           ++    E+     V WT L++ Y+ + +  E    AR  F   +  +  +   +++    
Sbjct: 174 RVFD--EMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTA-CA 230

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTS 360
           + A+          A   GI   V++    + +      +  A ++F ++ +K+   W +
Sbjct: 231 RVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGA 290

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           ++  YA  GH ++A+DLFL M+  G +PD       LSAC+  G +D G
Sbjct: 291 MVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 339


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 308/556 (55%), Gaps = 55/556 (9%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           LV +  LLN   KCG L    +LFD++ +RDV++W  +I+ Y+     ++ L LL +M  
Sbjct: 50  LVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLR 109

Query: 187 EGVSPDEVTMVSLISARTKL--RDLEMGKNLH----LFLEESTMKISGSLLNYLVDMYFK 240
            G+ P++ T+ SL+ A + +   D+  G+ LH     +  +S + +S ++L    DMY +
Sbjct: 110 IGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAIL----DMYAR 165

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           C  + EAQ +     +   + V W  L++GY +  + D+A  LF  M+  N+       S
Sbjct: 166 CHHLEEAQLIFD--VMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYS 223

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKK---------NQISID------NIELAYD 345
            +L         +CAS+G+L  G WVH  + K             +D      +IE A  
Sbjct: 224 SVLC--------ACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKK 275

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  +++++V  W S++  Y+  G  + A+  F EM  T   P+ +TF+ +L+ACSH GL
Sbjct: 276 VFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGL 335

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           +DEG  +     + YN++P++ HY  MVDLLGRAGHL+ +  FI+ MPI P  ++W +LL
Sbjct: 336 LDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALL 394

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            ACR H+N++L  +A + + E D    G HVLL NIYA AGR +D +++R  +++ G+KK
Sbjct: 395 GACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKK 454

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
           +   S +E    VH F + D  +P   EI+ M  +I   +++ G                
Sbjct: 455 EPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQE 514

Query: 571 QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           +E  LQ H E+LA+AF L++T   +TIRI  N+RICGDCHS  K  S++  REI++RD  
Sbjct: 515 REAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTN 574

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F  G CSC DYW
Sbjct: 575 RFHHFCDGACSCEDYW 590



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 54/314 (17%)

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           GKI  A  L  R+  D   +V+  TL++ Y K  +   AR+LFDEM  R++++WT +I+G
Sbjct: 34  GKIIHALLLNSRFRDD---LVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITG 90

Query: 302 MLNQDA-------------------EFK----YKSCASIGAL-------YHG-------- 323
               D                    +F      K+ + +G+         HG        
Sbjct: 91  YSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYD 150

Query: 324 --IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
             ++V   I        ++E A  +F  +  KN   W ++IA YA  G   KA  LF  M
Sbjct: 151 SNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNM 210

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK--PKMQHY--GCMVDLLG 437
                KP   T+ ++L AC+  G +++G     K      IK   K+  +    ++D+  
Sbjct: 211 LRENVKPTHFTYSSVLCACASMGSLEQG-----KWVHALMIKWGEKLVAFVGNTLLDMYA 265

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHV 496
           ++G +E++      +    DV  W+S+L     H   K+A   F+ +  T    ND   +
Sbjct: 266 KSGSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFL 324

Query: 497 LLANIYAKAGRLDD 510
            +    + AG LD+
Sbjct: 325 CVLTACSHAGLLDE 338


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/547 (34%), Positives = 291/547 (53%), Gaps = 49/547 (8%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T +  KCG +K+  ++F+ LPNRDVI+WNTMI      G   E  G+  +M  E V+PD 
Sbjct: 288 TKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDR 347

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           VT ++++SA  +   L  GK +H    +  +       N L++MY K G + +A+++  R
Sbjct: 348 VTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDR 407

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEF 309
             + + DVV WT LV GY    +  E+   F +M    VE N I++  ++          
Sbjct: 408 --MPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVL---------- 455

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKN 354
             K+C++  AL  G  +H  + K  I  D               ++E A  +   +S ++
Sbjct: 456 --KACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRD 513

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           V  W ++I   A  G   +A+  F  M+    +P+  TF+ ++SAC    LV+EG    +
Sbjct: 514 VVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFA 573

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
              + Y I P  +HY CMVD+L RAGHL E+ + I +MP  P  ++W +LL ACR H NV
Sbjct: 574 SMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNV 633

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           ++ E A +   + +P N G +V L+ IYA AG   D++++R  +++ G+KK+ G S IE 
Sbjct: 634 EIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEV 693

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMT----------------LQQQGLQETSLQHR 578
            G VH F +GD  +P +EEIY  L  +                   L Q+G +     H 
Sbjct: 694 AGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHS 753

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LA+A+GLIST  +T IR+  NLR+C DCH+  K  S++  REI+ RD  RFH F+ G+
Sbjct: 754 EKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGE 813

Query: 639 CSCRDYW 645
           CSC DYW
Sbjct: 814 CSCGDYW 820



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 196/407 (48%), Gaps = 54/407 (13%)

Query: 78  QVFEFLVFTGDLGYAQQ----IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR 133
           ++ +  V   DL   +Q    I+R G +P + I N++++             +Y++    
Sbjct: 49  KLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLK-------------LYVH---- 91

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
                 CG + E  +LFDK  N+ V+SWN MIS Y   G+ +E   L + M  EG+ PD+
Sbjct: 92  ------CGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDK 145

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T VS++SA +    L  G+ +H+ + E+ +  + ++ N L+ MY KCG + +A+++   
Sbjct: 146 FTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFD- 204

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
             +   D V WTTL   Y +S    E+ + +  M++  +    +    +L+        +
Sbjct: 205 -AMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLS--------A 255

Query: 314 CASIGALYHGIWVHVYIKKNQ---------------ISIDNIELAYDLFSEISEKNVYLW 358
           C S+ AL  G  +H  I +++               I    ++ A ++F  +  ++V  W
Sbjct: 256 CGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAW 315

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            ++I     +G  ++A  +F  M +    PD+VT++A+LSAC+  G +  G +  ++  +
Sbjct: 316 NTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK 375

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
              +   ++    ++++  +AG ++++      MP   DV  W++L+
Sbjct: 376 -DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALV 420



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/491 (20%), Positives = 206/491 (41%), Gaps = 79/491 (16%)

Query: 41  SLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97
           S D + + +SC    +    +++H H++   +  +  I   + +  V  G +  A+++  
Sbjct: 44  SYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFD 103

Query: 98  QGDEPEIKIWNSIIENQLINGYPQEVFAIY------------------LYLVTRTVLLN- 138
           +     +  WN +I      G  QE F ++                  L   +    LN 
Sbjct: 104 KFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNW 163

Query: 139 ----------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTS 170
                                       KCG +++  ++FD + +RD +SW T+   Y  
Sbjct: 164 GREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE 223

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
            G  +E L     M  EGV P  +T ++++SA   L  LE GK +H  + ES       +
Sbjct: 224 SGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRV 283

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
              L  MY KCG + +A+++   +E +   DV+ W T++ G V S + +EA  +F  M++
Sbjct: 284 STALTKMYIKCGAVKDAREV---FECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLK 340

Query: 290 RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----------- 338
             +    +    +L+        +CA  G L  G  +H    K+ +  D           
Sbjct: 341 ECVAPDRVTYLAILS--------ACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMY 392

Query: 339 ----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
               +++ A  +F  + +++V  WT+++  YA  G   ++   F +M + G + +++T++
Sbjct: 393 SKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYM 452

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +L ACS+   +  G +  ++  +   I   +     ++ +  + G +E++      M  
Sbjct: 453 CVLKACSNPVALKWGKEIHAEVVKA-GIFADLAVANALMSMYFKCGSVEDAIRVSEGMST 511

Query: 455 PPDVSIWSSLL 465
             DV  W++L+
Sbjct: 512 -RDVVTWNTLI 521



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 173/415 (41%), Gaps = 61/415 (14%)

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           +L  +  +G   D    V L+ +  K +DL +GK +H  +    MK +  ++N L+ +Y 
Sbjct: 31  VLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYV 90

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
            CG + EA++L  ++      VV W  ++SGY       EA  LF  M +  L       
Sbjct: 91  HCGSVNEARRLFDKF--SNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTF 148

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----NQISIDN-----------IELAY 344
             +L+        +C+S  AL  G  VHV + +    N  ++ N           +  A 
Sbjct: 149 VSILS--------ACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDAR 200

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F  ++ ++   WT++  AYA +G+AQ+++  +  M + G +P ++T++ +LSAC    
Sbjct: 201 RVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLA 260

Query: 405 LVDEGYDFLSK--------KSRVYNIKPKMQ----------------------HYGCMVD 434
            +++G    ++          RV     KM                        +  M+ 
Sbjct: 261 ALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIG 320

Query: 435 LLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
            L  +G LEE+      M    + PD   + ++L AC     +   +       +   ++
Sbjct: 321 GLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVS 380

Query: 492 DGAHV-LLANIYAKAGRLDDMSRI--RMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           D      L N+Y+KAG + D  ++  RM  RD+     L     + G  V  F++
Sbjct: 381 DVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFST 435


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/528 (36%), Positives = 286/528 (54%), Gaps = 42/528 (7%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LFD L  RD  +W+ M+  +   G +        ++   GV+PD  T+  +I       D
Sbjct: 57  LFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTD 116

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L++G+ +H  + +  +     +   LVDMY KC  + +AQ+L  R  +   D+V WT ++
Sbjct: 117 LQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFER--MLSKDLVTWTVMI 174

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
             Y   N   E+  LFD M E  ++   + +  ++N        +CA +GA++   + + 
Sbjct: 175 GAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVN--------ACAKLGAMHRARFAND 225

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           YI +N  S+D               ++E A ++F  + EKNV  W+++IAAY   G  + 
Sbjct: 226 YIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKD 285

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           AIDLF  M      P++VTF++LL ACSH GL++EG  F +     + ++P ++HY CMV
Sbjct: 286 AIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMV 345

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLLGRAG L+E+   I +M +  D  +WS+LL ACR H  ++LAE A   L E  P N G
Sbjct: 346 DLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPG 405

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            +VLL+NIYAKAG+ + +++ R  +    LKK  G++ IE     ++F+ GD  +P S+E
Sbjct: 406 HYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKE 465

Query: 554 IYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIR 597
           IY ML  +   L+  G                 QE    H E+LA+AFGLI+  E   IR
Sbjct: 466 IYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIR 525

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I  NLR+CGDCH+F K+ S +  R I++RD  RFH F  G CSC DYW
Sbjct: 526 ISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 79/152 (51%), Gaps = 2/152 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++   ++FD++  ++VISW+ MI+ Y   G  ++ + L   M +  + P+ VT VS
Sbjct: 248 KCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVS 307

Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           L+ A +    +E G +  +   EE  ++        +VD+  + G++ EA +L+    + 
Sbjct: 308 LLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTV- 366

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           E D  LW+ L+      ++ + A +  + ++E
Sbjct: 367 EKDERLWSALLGACRIHSKMELAEKAANSLLE 398



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 47/249 (18%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML---------------- 303
           D+V+   L+  Y +    D+A  LFD +  R+  +W++M+ G                  
Sbjct: 34  DLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELL 93

Query: 304 -------NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IE 341
                  N    F  ++C     L  G  +H  + K+ +  D+               +E
Sbjct: 94  RCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVE 153

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  LF  +  K++  WT +I AYA   +A +++ LF  M E G  PD+V  + +++AC+
Sbjct: 154 DAQRLFERMLSKDLVTWTVMIGAYADC-NAYESLVLFDRMREEGVVPDKVAMVTVVNACA 212

Query: 402 HGGLVDEGY---DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
             G +       D++ +     ++         M+D+  + G +E +      M    +V
Sbjct: 213 KLGAMHRARFANDYIVRNGFSLDVILGTA----MIDMYAKCGSVESAREVFDRMK-EKNV 267

Query: 459 SIWSSLLRA 467
             WS+++ A
Sbjct: 268 ISWSAMIAA 276


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/566 (33%), Positives = 308/566 (54%), Gaps = 44/566 (7%)

Query: 114 QLINGYPQEVFAIYLYLVTRTV--LLNKCGKLKE-VCQLFDKLPNRDVISWNTMISCYTS 170
           Q+I+G   ++  +    V   +  +  KCG ++E V ++FD +  + V SWN ++  Y  
Sbjct: 228 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQ 287

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
               R+ L L  +M   G+ PD  T+ SL+ A ++++ L  G+ +H F   + + +   +
Sbjct: 288 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
              L+ +Y  CGK   AQ L    E     +V W  +++GY ++   DEA  LF +M+  
Sbjct: 348 GISLLSLYICCGKPFAAQVLFDGME--HRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSD 405

Query: 291 NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------------ 338
            +  + + I  +          +C+ + AL  G  +H +  K  ++ D            
Sbjct: 406 GIQPYEIAIMCVCG--------ACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYA 457

Query: 339 ---NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
               I L+  +F  + EK+V  W  +IA Y + G  ++A++LF +M   G KPD  TF  
Sbjct: 458 KGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTG 517

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           +L ACSH GLV++G ++ ++   ++NI+PK++HY C+VD+LGRAG ++++   I  MP  
Sbjct: 518 ILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD 577

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
           PD  IWSSLL +CR H N+ L E     L E +P     +VL++N++A +G+ DD+ R+R
Sbjct: 578 PDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVR 637

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG------ 569
            +++D+GL+K  G S IE GG VH F  GD   P  EE+      +E+ +   G      
Sbjct: 638 GRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTG 697

Query: 570 -----LQETS-----LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVY 619
                L+E         H E+LA++FGL++T++   +R+  NLRICGDCH+  K  S+V 
Sbjct: 698 SVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVV 757

Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
           NR+IV+RDN RFH F+ G CSC DYW
Sbjct: 758 NRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 138/290 (47%), Gaps = 26/290 (8%)

Query: 130 LVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAE 187
           L TR + + + CG   +   +FDKL  +++  WN ++S YT   ++ + + + S++    
Sbjct: 143 LNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVT 202

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
              PD  T+  +I A   L DL +G+ +H    +  +     + N L+ MY KCG + EA
Sbjct: 203 EHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEA 262

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
            K +    +D   V  W  L+ GY ++++  +A  L+ +M +  L      I  +L    
Sbjct: 263 VKRVFDL-MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL---- 317

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISID---NIEL------------AYDLFSEISE 352
                +C+ + +L++G  +H +  +N +++D    I L            A  LF  +  
Sbjct: 318 ----LACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH 373

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           +++  W  +IA Y+  G   +AI+LF +M   G +P ++  + +  ACS 
Sbjct: 374 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 423



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 32/227 (14%)

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-LVDMYFKCGKIGEAQKLLGR 253
            M  L+ A  + +D+E+G+ LH  +  ST   +  +LN  ++ MY  CG   +++ +  +
Sbjct: 107 AMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDK 166

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLISWTLMISGMLNQDAEFK 310
             +   ++  W  +VS Y ++   ++A  +F E++   E    ++TL             
Sbjct: 167 --LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCV---------- 214

Query: 311 YKSCA-----SIGALYHGIWVH------VYIKKNQISIDNI-----ELAYDLFSEISEKN 354
            K+CA      +G + HG+         V++    I++        E    +F  +  K 
Sbjct: 215 IKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKT 274

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           V  W +++  YA     +KA+DL+L+M ++G  PD  T  +LL ACS
Sbjct: 275 VSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 16/135 (11%)

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGG 404
           +F ++  KN++ W ++++AY      + A+ +F E+   T  KPD  T   ++ AC+  G
Sbjct: 163 VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--G 220

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYG------CMVDLLGRAGHLEESANFITSMPIPPDV 458
           L+D G   +     ++ +  KM           ++ + G+ G +EE+   +  +     V
Sbjct: 221 LLDLGLGQI-----IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTV 275

Query: 459 SIWSSLLRACRCHQN 473
           S W++LL  C   QN
Sbjct: 276 SSWNALL--CGYAQN 288



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 103/236 (43%), Gaps = 26/236 (11%)

Query: 39  PVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + ++ V  +CS +      + +H   +  +L  D  +S+ + +     G +G +Q+I
Sbjct: 409 PYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRI 468

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV---------TRTVLLNKC---GKL 143
             +  E ++  WN II    I+G  +E   ++  ++         T T +L  C   G +
Sbjct: 469 FDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLV 528

Query: 144 KEVCQLFDKLPNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           ++  + F+++ N   I      +  ++      G   + L L+ +M  +   PD     S
Sbjct: 529 EDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD---PDSRIWSS 585

Query: 199 LISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           L+S+     +L +G+ + +  LE    K    +L  + +++   GK  + +++ GR
Sbjct: 586 LLSSCRIHGNLGLGEKVANKLLELEPEKPENYVL--ISNLFAGSGKWDDVRRVRGR 639


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/548 (32%), Positives = 300/548 (54%), Gaps = 43/548 (7%)

Query: 130 LVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           L +   L  +CG L    ++FD++P+   +SW  +I+ Y   G  RE + +     A G+
Sbjct: 109 LTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGM 168

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            PD  T V +++A  ++ DL  G+ +    E+  +  S  +    VD+Y KCG++ +A++
Sbjct: 169 RPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKARE 228

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           +  +  + + D V W  +V GY  +    EA  LF  M    +      ++G L+     
Sbjct: 229 VFDK--MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALS----- 281

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSEISEK 353
              +C  +GAL  G      +  ++  +DN  L                A+ +F ++ +K
Sbjct: 282 ---ACTRLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKK 337

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           ++ +W ++I    M GH + A  L  +ME++G K +  TFI LL +C+H GL+ +G  + 
Sbjct: 338 DIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYF 397

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
              +++Y+I P+++HYGC+VDLL RAG L+E+   I  MP+P +  I  +LL  C+ H+N
Sbjct: 398 HNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRN 457

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
            +LAEH    L   +P N G +V+L+NIY+  GR +D +++R+ +++ G++K    S +E
Sbjct: 458 AELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVE 517

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQH 577
             G VH+F  GD  +P S++IY  L+E+ + ++  G + T+                + H
Sbjct: 518 FEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHH 577

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            E+LA+AF L+ T    TIR+  NLR+C DCH+ +K+ S++ +REI++RDN RFH F+ G
Sbjct: 578 SEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDG 637

Query: 638 QCSCRDYW 645
            CSC DYW
Sbjct: 638 SCSCNDYW 645



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 12/229 (5%)

Query: 190 SPDEVTM-VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           +P  +T  ++L SA      L  G+ LH    +     +  +L  L+ +Y +CG +  AQ
Sbjct: 67  NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 126

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDE----ARRLFDEMVERNLISWTLMISGMLN 304
           ++    E+     V WT L++ Y+ + +  E    AR  F   +  +  +   +++    
Sbjct: 127 RVFD--EMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTA-CA 183

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTS 360
           + A+          A   GI   V++    + +      +  A ++F ++ +K+   W +
Sbjct: 184 RVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGA 243

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           ++  YA  GH ++A+DLFL M+  G +PD       LSAC+  G +D G
Sbjct: 244 MVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 292


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/542 (34%), Positives = 297/542 (54%), Gaps = 45/542 (8%)

Query: 139 KCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMY-REGLGLLSKMGAEGVSPDEV 194
           KC     +C   ++FD++ + +V SW  MI+ Y   G Y  E L L   M    V P+  
Sbjct: 318 KCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHF 377

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  S + A   L  L +G+ +     +        + N L+ MY + G+I +A+K     
Sbjct: 378 TFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI- 436

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + E +++ + T++  Y K+   +EA  LF+E+ ++ + +     + +L+          
Sbjct: 437 -LFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLS--------GA 487

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
           ASIG +  G  +H  + K+ + ++               NIE A+ +F ++ ++NV  WT
Sbjct: 488 ASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWT 547

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           S+I  +A  G A +A++LF +M E G +P++VT+IA+LSACSH GLV+EG+         
Sbjct: 548 SIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTE 607

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           + + P+M+HY C+VD+LGR+G L E+  FI SMP   D  +W + L ACR H N++L +H
Sbjct: 608 HGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKH 667

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A K + E +P +  A++LL+N+YA   + D++S IR  +++  L K+ G S +E    VH
Sbjct: 668 AAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVH 727

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAV 583
           KF  GD  +P + EIY  L  + + +++ G                 ++   QH E++AV
Sbjct: 728 KFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAV 787

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGLISTS+   IR+  NLRICGDCHS +K  S    REI++RD  RFH  + G+CSC +
Sbjct: 788 AFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNE 847

Query: 644 YW 645
           YW
Sbjct: 848 YW 849



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 179/407 (43%), Gaps = 43/407 (10%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           + + +SI    +  GY Q    +   L+   + +   G L    ++F+K+P R+ ++W  
Sbjct: 184 VSVGDSIFGFVIKTGYLQSDVCVGCGLID--MFVKGRGDLVSAFKVFEKMPERNAVTWTL 241

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MI+     G   E + L   M   G  PD  T+  +ISA   +  L +G+ LH       
Sbjct: 242 MITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHG 301

Query: 224 MKISGSLLNYLVDMYFKC---GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD-E 279
           + +   +   L++MY KC   G +  A+K+    +I + +V  WT +++GYV+    D E
Sbjct: 302 LTLDRCVGCCLINMYAKCSVDGSMCAARKIFD--QILDHNVFSWTAMITGYVQKGGYDEE 359

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS--- 336
           A  LF  M+  ++I      S  L        K+CA++ AL  G  V  +  K   S   
Sbjct: 360 ALDLFRGMILTHVIPNHFTFSSTL--------KACANLAALRIGEQVFTHAVKLGFSSVN 411

Query: 337 ---------------IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
                          ID+   A+D+   + EKN+  + +VI AYA   ++++A++LF E+
Sbjct: 412 CVANSLISMYARSGRIDDARKAFDI---LFEKNLISYNTVIDAYAKNLNSEEALELFNEI 468

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC--MVDLLGRA 439
           E+ G      TF +LLS  +  G + +G       +RV     K+    C  ++ +  R 
Sbjct: 469 EDQGMGASAFTFASLLSGAASIGTIGKGEQI---HARVIKSGLKLNQSVCNALISMYSRC 525

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           G++E +      M    +V  W+S++     H     A   F  + E
Sbjct: 526 GNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHKMLE 571



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 116/523 (22%), Positives = 215/523 (41%), Gaps = 93/523 (17%)

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G   + +  L  M  +G  PD  T    +    + R  ++G  +H  L +S +++    L
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L+ +Y KCG+  +A  +  R      D++ W+ +VS +  +N    A   F +M+E  
Sbjct: 105 NSLISLYSKCGQWEKATSIF-RLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 292 LI--SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----------- 338
                +    +      AEF      S+G    G  +     ++ + +            
Sbjct: 164 YYPNEYCFAAATRACSTAEF-----VSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGR 218

Query: 339 -NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
            ++  A+ +F ++ E+N   WT +I      G+A +AIDLFL+M  +G +PD+ T   ++
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVI 278

Query: 398 SACSHGGLVDEGYDFLSKKSR------------VYNIKPKMQHYGCM------------- 432
           SAC++  L+  G    S+  R            + N+  K    G M             
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 433 ---------VDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHA 480
                       + + G+ EE+ +    M    + P+   +SS L+AC     +++ E  
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 481 FKHLTET--DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
           F H  +     +N  A+ L++ +YA++GR+DD      K  D+  +K    +LI     +
Sbjct: 399 FTHAVKLGFSSVNCVANSLIS-MYARSGRIDDAR----KAFDILFEK----NLISYNTVI 449

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQHRERL--AVAFGLISTSEKTTI 596
             +      N +SEE   + NEIE     QG+  ++      L  A + G I   E+   
Sbjct: 450 DAYAK----NLNSEEALELFNEIE----DQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501

Query: 597 RIV-NNLRI--------------CGDCHSFMKVTSQVYNREIV 624
           R++ + L++              CG+  S  +V   + +R ++
Sbjct: 502 RVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVI 544



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 135/289 (46%), Gaps = 32/289 (11%)

Query: 136 LLNKCGKLKEVCQLFDKL-PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
           L +KCG+ ++   +F  +  +RD+ISW+ M+SC+ +  M    L     M   G  P+E 
Sbjct: 110 LYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEY 169

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-LVDMYFKC-GKIGEAQKLLG 252
              +   A +    + +G ++  F+ ++    S   +   L+DM+ K  G +  A K+  
Sbjct: 170 CFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE 229

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
           +  + E + V WT +++  ++     EA  LF +M+          +SG+++        
Sbjct: 230 K--MPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVIS-------- 279

Query: 313 SCASIGALYHGIWVHVYIKKNQISID------------------NIELAYDLFSEISEKN 354
           +CA++  L  G  +H    ++ +++D                  ++  A  +F +I + N
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 355 VYLWTSVIAAYAM-AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           V+ WT++I  Y    G+ ++A+DLF  M  T   P+  TF + L AC++
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACAN 388



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG ++   Q+F+ + +R+VISW ++I+ +   G   + L L  KM  EGV P+EVT
Sbjct: 521 MYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVT 580

Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            ++++SA + +  +  G K+      E  +         +VD+  + G + EA + +   
Sbjct: 581 YIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSM 640

Query: 255 EIDEVDVVLWTTLVSG 270
              + D ++W T +  
Sbjct: 641 PY-KADALVWRTFLGA 655


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/544 (35%), Positives = 303/544 (55%), Gaps = 45/544 (8%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
            +L+N   K G L +   +FDK+P+R+V+SW TMIS Y++  +  + L  L  M  EGV 
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           P+  T  S++ A   L +L   + LH  + +  +     + + L+D+Y + G++  A ++
Sbjct: 64  PNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
               E+   D+V+W+++++G+ ++++ DEA RLF  M     ++    ++ +L       
Sbjct: 121 FD--EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVL------- 171

Query: 311 YKSCASIGALYHGIWVHVYIKK-------NQISID------NIELAYDLFSEISEKNVYL 357
            ++C  +  L  G  VHV++ K       N   +D      ++E A  +F  + EK+V  
Sbjct: 172 -RACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVIS 230

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           W+++IA  A  G++++A+ LF  M+  G KP+ VT + +L ACSH GLV+EG  +     
Sbjct: 231 WSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMK 290

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
            ++ I P  +HYGCM+DLLGRAG L E+ + I  M   PD   W +LL ACR H+NV +A
Sbjct: 291 ELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVA 350

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
            HA K +   DP + G +VLL+NIYA   R +D++ +R  + + G+KK+ G S IE    
Sbjct: 351 IHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQ 410

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQETSLQHRERL 581
           +H F  GD  +P   EI + LN++   L   G                +Q++   H E+L
Sbjct: 411 IHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKL 470

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+ FGL+S     TIRI  NLRICGDCH F K+ +++  R IVIRD  R+H FQ G CSC
Sbjct: 471 AIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSC 530

Query: 642 RDYW 645
            D+W
Sbjct: 531 GDFW 534



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 121/249 (48%), Gaps = 28/249 (11%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR----LFD 285
           L+N L++MY K G + +AQ +  +  + + +VV WTT++S Y  +   D+A      +  
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDK--MPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLR 59

Query: 286 EMVERNLISWTLMI---SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----D 338
           E V  N+ +++ ++    G+ N     +   C  I     G+   V+++   I +     
Sbjct: 60  EGVRPNMFTYSSVLRACDGLFN----LRQLHCCIIKI---GLDSDVFVRSALIDVYSRWG 112

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +E A  +F E+   ++ +W+S+IA +A      +A+ LF  M+  G    Q T  ++L 
Sbjct: 113 ELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLR 172

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIK--PKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           AC+   L++     L ++  V+ +K    +     ++D+  + G LE+ AN +    +  
Sbjct: 173 ACTGLALLE-----LGRQVHVHVLKYDQDLILNNALLDMYCKCGSLED-ANAVFVRMVEK 226

Query: 457 DVSIWSSLL 465
           DV  WS+++
Sbjct: 227 DVISWSTMI 235


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 211/690 (30%), Positives = 344/690 (49%), Gaps = 126/690 (18%)

Query: 52  SSIDEFERI----HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIW 107
           S +D+ +R+    H HL   N   D  I  ++      +G++ +A+++  +  + +   W
Sbjct: 36  SDVDQAKRLKSHMHLHLFKPN---DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSW 92

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
           N+++                        L  K G ++++  +FD +P+RD +S+NT+IS 
Sbjct: 93  NAMLS-----------------------LYAKSGLVEDLRVIFDNMPSRDSVSYNTVISG 129

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
           +   G     LG+  +M  EG+ P E T VS+++A T+L DL  GK +H  +    +  +
Sbjct: 130 FAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGN 189

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER---------- 277
             + N L D+Y +CG+I +A++L  R  I   +VV W  ++SGY+K+ +           
Sbjct: 190 VFVCNALTDLYARCGEIDQARRLFDRMVIR--NVVTWNLMISGYLKNRQPEKCIDLFHEM 247

Query: 278 -------------------------DEARRLFDEMVERNLISWTLMISG----------- 301
                                    DEAR++F E+ E++ + WT+MI G           
Sbjct: 248 QVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDAL 307

Query: 302 -----MLNQDAEFK-------YKSCASIGALYHGIWVHVYIKKNQISIDNIEL------- 342
                ML ++A            SCA + +LYHG  VH   K   + +++  L       
Sbjct: 308 LLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHG--KAFLMGVNDDLLVSSALVD 365

Query: 343 ----------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                     A+ +FS +  +NV  W S+I  YA+ G   +A+ L+  M E   KPD VT
Sbjct: 366 MYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVT 425

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           F+ +LSAC H GLV+EG ++    S  + ++P   HY CMV+L GR+GH++++ + I+SM
Sbjct: 426 FVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSM 485

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
              P+  IW+++L  C    ++K  E A + L E +P N   +++L+N+YA  GR  D++
Sbjct: 486 SQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVA 545

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ- 571
            IR  ++   +KK   YS IE    VHKF + D  +P ++ I++ LN +   LQ+ G   
Sbjct: 546 SIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSP 605

Query: 572 ---------------ETSLQHRERLAVAFGLISTSEKTT-IRIVNNLRICGDCHSFMKVT 615
                          E+   H E+LA+A+GLI      T IRI+ N+R C DCH FMK  
Sbjct: 606 NTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIFMKFV 665

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S +  R +++RD+ RFH F  G+CSC+DYW
Sbjct: 666 SNITRRPVILRDSNRFHHFVEGKCSCKDYW 695


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 205/623 (32%), Positives = 320/623 (51%), Gaps = 72/623 (11%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           +++HS +IT+    D  IS  +       G L  A  +   G  P   I +    N LIN
Sbjct: 72  KQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLF--GVMPRKNIMSC---NILIN 126

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
           GY    F    ++  R              ++FD++P R+V +WN M++         EG
Sbjct: 127 GY----FRSGDWVTAR--------------KMFDEMPERNVATWNAMVAGLIQFEFNEEG 168

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
           LGL S+M   G  PDE  + S++     LR L  G+ +H ++ +   + +  +++ L  M
Sbjct: 169 LGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHM 228

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLI 293
           Y KCG +GE ++L+    +   +VV W TL++G  ++   +E    ++ M       + I
Sbjct: 229 YMKCGSLGEGERLI--RAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKI 286

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI---------------D 338
           ++  +IS            SC+ +  L  G  +H  + K   S+                
Sbjct: 287 TFVSVIS------------SCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCG 334

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +E +  +F E    +V  W+S+IAAY   G   +AIDLF +ME+   + + VTF++LL 
Sbjct: 335 CLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLY 394

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACSH GL ++G  F       Y +KP+++HY CMVDLLGR G +EE+   I SMP+  DV
Sbjct: 395 ACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADV 454

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
             W +LL AC+ H+  ++A    + +   DP +   +VLL+NI+A   R DD+S +R  +
Sbjct: 455 ITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAM 514

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------- 570
           RD  LKK+ G S +E    +H+F  GD  +P S EI   L E+   ++++G         
Sbjct: 515 RDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVL 574

Query: 571 -------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                  +E SL  H E+LA+AF L+ T   T IR++ NLR+C DCH  +K  S++ NRE
Sbjct: 575 HDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNRE 634

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           I++RD+ RFH F+ G+CSC DYW
Sbjct: 635 IIVRDSSRFHHFKNGRCSCGDYW 657


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 293/522 (56%), Gaps = 29/522 (5%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FDK+P++DV+SW T+I+ +   G +   L L  ++  EG+  D + + S++ A + L+ 
Sbjct: 476 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKL 535

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           +   K +H ++    +     L N +VD+Y +CG +  A ++    E    DVV WT+++
Sbjct: 536 ISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFK--DVVSWTSMI 592

Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASI----GAL 320
           S YV +   +EA  LF  M    VE + IS   ++S   +  A  K K         G +
Sbjct: 593 SCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFV 652

Query: 321 YHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
             G      +         +E + ++F+ I  K++ LWTS+I AY M G  + AIDLF  
Sbjct: 653 LEGSLASTLVDM-YARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRR 711

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           ME+    PD + F+A+L ACSH GL++EG  FL      Y ++P  +HY C+VDLLGRA 
Sbjct: 712 MEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRAN 771

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
           HLEE+  F+  M + P   +W +LL AC+ H N +L E A + L E DP N G +VL++N
Sbjct: 772 HLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSN 831

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           +YA   R  D+  +RM+++  GLKK  G S IE G  VH F + D  +P S EIY  L++
Sbjct: 832 VYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQ 891

Query: 561 IEMTLQQQG-------------LQETSLQ----HRERLAVAFGLISTSEKTTIRIVNNLR 603
           I   L ++G              +E  +Q    H ERLA+A+G+++T E  ++RI  NLR
Sbjct: 892 ITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLR 951

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +CGDCH+F K+ S+ + RE+V+RD  RFH F+GG CSC D W
Sbjct: 952 VCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 129/519 (24%), Positives = 231/519 (44%), Gaps = 99/519 (19%)

Query: 34  FANVCP--VSLD-----VIMVERSCSSIDEFERIHSHLITTN-LMRDPQISTQVFEFLVF 85
           FAN  P   SLD     V+ +  S  ++ E +++H+H+IT+N L     +ST++      
Sbjct: 103 FANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGK 162

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP---------QEVFAIYLYLVTRTVL 136
            G L  A+++        I  WN++I   + NG P           V  I L   T   +
Sbjct: 163 CGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCI 222

Query: 137 LNKCGKLKE--------------------------------------VCQLFDKLPNR-D 157
           L  CG LK+                                        QLFD++P + D
Sbjct: 223 LKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 282

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
           V+SWN+MIS Y+S G   E L L  +M    ++P+  T V+ + A      ++ G  +H 
Sbjct: 283 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 342

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
            + +S+  I+  + N L+ MY + GK+GEA  +   Y +D+ D + W +++SG+V++   
Sbjct: 343 TVLKSSYYINVFVANALIAMYARFGKMGEAANIF--YNMDDWDTISWNSMLSGFVQNGLY 400

Query: 278 DEARRLFDEMVER----NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
            EA + + EM +     +L++   +I+            + A  G   +G+ +H Y  KN
Sbjct: 401 HEALQFYHEMRDAGQKPDLVAVISIIA------------ASARSGNTLNGMQIHAYAMKN 448

Query: 334 QISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            +  D               +++    +F ++ +K+V  WT++IA +A  G   +A++LF
Sbjct: 449 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 508

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY---GCMVDL 435
            E++  G   D +   ++L ACS   L+        K+   Y I+  +        +VD+
Sbjct: 509 REVQLEGIDLDVMMISSILLACSGLKLISS-----VKEIHSYIIRKGLSDLVLQNGIVDV 563

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
            G  G+++ +A     +    DV  W+S++ +C  H  +
Sbjct: 564 YGECGNVDYAARMFELIEF-KDVVSWTSMI-SCYVHNGL 600



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 187/404 (46%), Gaps = 34/404 (8%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           GK+ E   +F  + + D ISWN+M+S +   G+Y E L    +M   G  PD V ++S+I
Sbjct: 367 GKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISII 426

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           +A  +  +   G  +H +  ++ +     + N LVDMY K   +     +  +  + + D
Sbjct: 427 AASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDK--MPDKD 484

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           VV WTT+++G+ ++     A  LF E+    +    +MIS +L         +C+ +  +
Sbjct: 485 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSIL--------LACSGLKLI 536

Query: 321 YHGIWVHVYIKKNQIS--------------IDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                +H YI +  +S                N++ A  +F  I  K+V  WTS+I+ Y 
Sbjct: 537 SSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYV 596

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIK 423
             G A +A++LF  M+ETG +PD ++ +++LSA +    + +G   + FL +K  V    
Sbjct: 597 HNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVL--- 653

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
            +      +VD+  R G LE+S N    +    D+ +W+S++ A   H   + A   F+ 
Sbjct: 654 -EGSLASTLVDMYARCGTLEKSRNVFNFIR-NKDLVLWTSMINAYGMHGCGRAAIDLFRR 711

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           + +     D  H+    +         M+  R  L  M  + QL
Sbjct: 712 MEDESIAPD--HIAFVAVLYACSHSGLMNEGRRFLESMKYEYQL 753



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 99/180 (55%), Gaps = 11/180 (6%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG +    ++F+ +  +DV+SW +MISCY   G+  E L L   M   GV PD +++VS
Sbjct: 566 ECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVS 625

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA   L  L+ GK +H FL      + GSL + LVDMY +CG + +++ +     I  
Sbjct: 626 ILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNF--IRN 683

Query: 259 VDVVLWTTLVSGY----VKSNERDEARRLFDEMVERNLISWTLMI-----SGMLNQDAEF 309
            D+VLWT++++ Y          D  RR+ DE +  + I++  ++     SG++N+   F
Sbjct: 684 KDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRF 743


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 188/559 (33%), Positives = 298/559 (53%), Gaps = 68/559 (12%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F ++   +   W  MI  Y   G+  E     ++M  +GV P   T  +L  A     +
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 209 LEMGKNLHLFLEESTMKISG-----SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
           +++GK +H      T+ I G      + N ++D+Y KCG +G A+K+    E+ E DVV 
Sbjct: 158 MDLGKQVH----AQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFD--EMSERDVVS 211

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--------------QDAEF 309
           WT L+  Y K  + + A  LFD++  +++++WT M++G                 QD   
Sbjct: 212 WTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGM 271

Query: 310 K---------YKSCASIGALYHGIWVHVYIKKNQIS-----------ID------NIELA 343
           +           +CA +GA+ H  W+    +++              ID      + + A
Sbjct: 272 ETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEA 331

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
           Y +F  + E+NV+ ++S+I  YAM G A  A+ LF +M +T  +P++VTFI +LSACSH 
Sbjct: 332 YKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHA 391

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GLV++G    +K  + + + P   HY CMVDLLGRAG LEE+ + + +MP+ P+  +W +
Sbjct: 392 GLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGA 451

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL ACR H N  +A+ A   L + +P   G ++LL+NIYA AGR +++S++R  +R+ G 
Sbjct: 452 LLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGF 511

Query: 524 KKQLGYSLIE-QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQET--------- 573
           KK  G S  E + G +H F +GD  +P S EI   L ++   L+  G +           
Sbjct: 512 KKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLT 571

Query: 574 -------SLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                   + H E+LA+A+GL+ T    TI+I+ N+RIC DCH+ M   S++  REI++R
Sbjct: 572 DDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVR 631

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           DN RFH F  G CSC ++W
Sbjct: 632 DNMRFHHFHNGTCSCGNFW 650



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 39/233 (16%)

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K +H  +  + +     +L  L+ M  K      +  LL   +++  +  LWT ++ GY 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGM-------LNQD-AEFKYKSCASIGALYHGI 324
                 E+   +  M    +   +   S +       LN D  +  +     IG     +
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 325 WV-----HVYIK----------------KNQISIDNIELAY----------DLFSEISEK 353
           +V      +Y+K                ++ +S   + +AY           LF ++  K
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLK 238

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           ++  WT+++  YA  G  ++A++ F +M++ G + D+VT   ++SAC+  G V
Sbjct: 239 DMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAV 291


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 206/592 (34%), Positives = 321/592 (54%), Gaps = 47/592 (7%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
           G++G +  +    D  EI I  SI    L  G  +E   +   LV+   L  K G   + 
Sbjct: 75  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESI-VQTALVS---LYGKLGHCTDA 130

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
             +F ++ +RDV++W+ M++ Y   G  RE LGL  +M  +GV+P++VT+VS + A   L
Sbjct: 131 ASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASL 190

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            DL  G  +H  +E   ++    +   LV++Y KCG+I  A +  G  +I E +VV W+ 
Sbjct: 191 GDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFG--QIVEKNVVAWSA 248

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           + + Y +++   +A R+   M    L   +     +L+        +CA+I AL  G  +
Sbjct: 249 ISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLD--------ACAAIAALKQGRRI 300

Query: 327 H-------------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
           H             VY+    +++     N+ LA ++F +I+  ++ LW S+IA  A  G
Sbjct: 301 HERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHG 360

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
             +KA++LF  M   G +P  +TF ++L ACSH G++D+G          + I P+ +H+
Sbjct: 361 QTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHF 420

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GCMVDLLGRAG + +S + +  MP  P    W + L ACR ++N+  A  A ++L + DP
Sbjct: 421 GCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDP 480

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
                +VLL+N+YAKAGR  D++R+R  ++     K+ G S IE    VH+F SGD+ +P
Sbjct: 481 RKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHP 540

Query: 550 HSEEIYLMLNEI-------------EMTLQ--QQGLQETSLQ-HRERLAVAFGLISTSEK 593
              EI+  L  +             EM L   +Q ++ET +  H E+LA+AF L++T E 
Sbjct: 541 RIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEG 600

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + IR+V NLR+C DCH+  K  S++ NREIV+RD  RFHRFQ G CSC DYW
Sbjct: 601 SPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 167/372 (44%), Gaps = 41/372 (11%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KC +  +   +F  + +++V SW  M++ +     +         M  +G++P EV 
Sbjct: 19  LYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVG 78

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +   +SA T  R++ +G+++ L +  + ++    +   LV +Y K G   +A  +  R  
Sbjct: 79  ISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLR-- 136

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKY 311
           +   DVV W+ +V+ Y ++    EA  LF +M    V  N ++   ++SG+         
Sbjct: 137 MSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVT---LVSGL--------- 184

Query: 312 KSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVY 356
            +CAS+G L  G  +H  ++   I                   IE A + F +I EKNV 
Sbjct: 185 DACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVV 244

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W+++ AAYA     + AI +   M+  G  P+  TF+++L AC+    + +G       
Sbjct: 245 AWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRI---H 301

Query: 417 SRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
            R++ +   ++        +V++  + G+L  + N    +    D+ +W+SL+     H 
Sbjct: 302 ERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHG 360

Query: 473 NVKLAEHAFKHL 484
             + A   F+ +
Sbjct: 361 QTEKALELFERM 372



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 119/245 (48%), Gaps = 11/245 (4%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           L N L+D+Y KC +  +A  +   + I   +V  WT +++ + ++ + D     F  M+ 
Sbjct: 12  LCNLLIDLYTKCDRFDDALAVF--HGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLL 69

Query: 290 RNLISWTLMISGMLNQ--DA-EFKYKSCASIGALYHGIWVHVYIKKNQIS----IDNIEL 342
           + +    + IS  L+   DA E        +  L  GI     ++   +S    + +   
Sbjct: 70  QGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTD 129

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  +F  +S ++V  W++++AAYA  GH ++A+ LF +M+  G  P++VT ++ L AC+ 
Sbjct: 130 AASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACAS 189

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            G +  G   + ++     I+  +     +V+L G+ G +E +A     + +  +V  WS
Sbjct: 190 LGDLRSGA-LMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEKNVVAWS 247

Query: 463 SLLRA 467
           ++  A
Sbjct: 248 AISAA 252


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 203/633 (32%), Positives = 322/633 (50%), Gaps = 84/633 (13%)

Query: 71  RDPQIS----TQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAI 126
           RDP  S    T +   L   G +  A+ +  Q  +P +  WN+     +I GY Q     
Sbjct: 315 RDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNA-----MITGYMQN---- 365

Query: 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                         G + E  +LFD++P R+ ISW  MI+ Y   G   E L LL  +  
Sbjct: 366 --------------GMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHR 411

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G+ P   ++ S   A + +  LE G+ +H    ++  + +  + N L+ MY KC  +  
Sbjct: 412 NGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEY 471

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML--- 303
            +++  R  +   D V W + ++  V++N  ++AR +FD M+ R+++SWT +IS      
Sbjct: 472 VRQVFNRMRVK--DTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAE 529

Query: 304 --NQDAEFKYKS-------------------CASIGALYHGIWVHVYIKKNQISIDNIEL 342
             ++  EF +K+                   C  +G+   G  +H    K+ +  + I  
Sbjct: 530 RGDEAVEF-FKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVA 588

Query: 343 --------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                         ++ +F  + E++++ W + I   A  G  ++AI ++  ME  G  P
Sbjct: 589 NALMSMYFKCGCADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLP 648

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           ++VTF+ LL+ACSH GLVDEG+ F    SR Y + P ++HY CMVDLLGR G ++ +  F
Sbjct: 649 NEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKF 708

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I  MPI PD  IWS+LL AC+ H+N ++   A + L  T+P N G +V+L+NIY+  G  
Sbjct: 709 IYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMW 768

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
            +++ +R  ++  G+ K+ G S ++    VH F +GD  +   EEI   L ++   L+  
Sbjct: 769 VEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGT 828

Query: 569 GL---------------QETS-LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G                +E+S L H E+LAVA+GL+ T +   I+I+ NLRICGDCH+F+
Sbjct: 829 GYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFI 888

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K  S V  R+I IRD  RFH F+ G CSC D+W
Sbjct: 889 KFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 127/553 (22%), Positives = 230/553 (41%), Gaps = 90/553 (16%)

Query: 4   RSVEPQLTETIFEPKLVRLGLVPKMRISRKFANVCPVSLDVI----MVERSCSS-IDEFE 58
           RSV   L ++    ++  L  + ++R +R+  +  P   D+I    M+   C+S + E  
Sbjct: 25  RSVHRALDKSAHSARIRELARLGRLREAREVFDAMP-HRDIIAWNSMISAYCNSGMLEDA 83

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           RI    I+   +R   I    +  L   G +  A+++     E     WN+++   + NG
Sbjct: 84  RILFDAISGGNVRTATILLSGYARL---GRVLDARRVFDGMPERNTVAWNAMVSCYVQNG 140

Query: 119 YPQEVFAIYLYLVTRTV------LLNKCG--KLKEVCQLFDKLPNRDVISWNTMISCYTS 170
                  ++  + +R V      +   C   ++ +   LF ++P R++++W  MIS Y  
Sbjct: 141 DITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVR 200

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
           +  + +G  +   M  EG SPD+    S++SA T L+DL                    +
Sbjct: 201 IEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDL-------------------GV 241

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK-SNERDEARRLFDEMVE 289
           L  L  +  K G               E DVV+ T++++ Y + ++  D A + FD MVE
Sbjct: 242 LEVLRPLVLKTGF--------------ESDVVIGTSILNVYTRDASALDIAIKFFDGMVE 287

Query: 290 RNLISWTLMISGMLNQ---DAEFK------YKSCASIGALYHGIWVHVYIKKNQISIDNI 340
           RN  +W+ MI+ + +    DA          KS  S  AL  G+     I + +I  + I
Sbjct: 288 RNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQI 347

Query: 341 ---------------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
                                + A +LF  +  +N   W  +IA YA  G +++A+DL  
Sbjct: 348 PDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQ 407

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC--MVDLLG 437
            +   G  P   +  +   ACSH G ++ G    S   +      +   Y C  ++ + G
Sbjct: 408 ALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKA---GCQFNSYVCNALISMYG 464

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           +  ++E        M +   VS W+S + A   +  ++ A H F ++   D +   +   
Sbjct: 465 KCRNMEYVRQVFNRMRVKDTVS-WNSFIAALVQNNMLEDARHIFDNMLSRDVV---SWTT 520

Query: 498 LANIYAKAGRLDD 510
           + + YA+A R D+
Sbjct: 521 IISAYAQAERGDE 533


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 212/651 (32%), Positives = 334/651 (51%), Gaps = 73/651 (11%)

Query: 29  RISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGD 88
           RI + +A++    L   + +R+   + E +++H+H+ T+  +    IS ++ +     G 
Sbjct: 113 RIEKPYASIYLTLLKFCLKQRA---LKEGKQVHAHIKTSGSI-GLYISNRLLDMYAKCGS 168

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQ 148
           L  A+++  +    ++  WN      +I+GY                   K G  ++   
Sbjct: 169 LVDAEKVFDEMVHRDLCSWNI-----MISGYV------------------KGGNFEKARN 205

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKLR 207
           LFDK+PNRD  SW  +IS         E L L   M     S  ++ T+ S ++A   + 
Sbjct: 206 LFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIP 265

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L MGK +H  +    +     +   L+DMY KCG I EA+ +  + E  E DVV WTT+
Sbjct: 266 SLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKME--ERDVVSWTTM 323

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           +  Y+K+  R+E   LF  ++  N++      +G+LN        +CA + A   G  +H
Sbjct: 324 IHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLN--------ACADLAAEDLGKQIH 375

Query: 328 VYIKKNQISID-----------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
            Y+ +  +  D                 +IE A  +F  + + +++ WTS++  YA  G 
Sbjct: 376 AYMVR--VGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQ 433

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
             KA+  F  + ++GTKPD + FI +LSAC+H GLVD+G ++       + +   + HY 
Sbjct: 434 HDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYA 493

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           C++DLL RAG   E+ + I  MPI PD  IW++LL  CR H N++LA+ A K L E +P 
Sbjct: 494 CIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPE 553

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
           N   +V LANIYA AG   + + IR  +   G+ K+ G S IE    VH F+ GD  +P 
Sbjct: 554 NPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPK 613

Query: 551 SEEIYLMLNEIEMTLQQQG--------LQETSLQ--------HRERLAVAFGLISTSEKT 594
           S+EI   L+E+   +++ G        L +  L+        H E+LAVAFG+IST   T
Sbjct: 614 SKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGT 673

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            I++  NLR C DCH+ +K  S +  R+I++RD+ RFH F+GG CSC+DYW
Sbjct: 674 PIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 186/538 (34%), Positives = 294/538 (54%), Gaps = 41/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG L    ++FD +  + V SWN ++  Y      R+ L L  +M   G+ PD  T+ S
Sbjct: 354 RCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGS 413

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ A ++++ L  G+ +H F   + + +   +   L+ +Y  CGK   AQ L    E   
Sbjct: 414 LLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGME--H 471

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             +V W  +++GY ++   DEA  LF +M+   +  + + I  +          +C+ + 
Sbjct: 472 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCG--------ACSQLS 523

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           AL  G  +H +  K  ++ D                I L+  +F  + EK+V  W  +IA
Sbjct: 524 ALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIA 583

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y + G  ++A++LF +M   G KPD  TF  +L ACSH GLV++G ++ ++   ++NI+
Sbjct: 584 GYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIE 643

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           PK++HY C+VD+LGRAG ++++   I  MP  PD  IWSSLL +CR H N+ L E     
Sbjct: 644 PKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANK 703

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L E +P     +VL++N++A +G+ DD+ R+R +++D+GL+K  G S IE GG VH F  
Sbjct: 704 LLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLI 763

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG-----------LQETS-----LQHRERLAVAFGL 587
           GD   P  EE+      +E+ +   G           L+E         H E+LA++FGL
Sbjct: 764 GDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGL 823

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++T++   +R+  NLRICGDCH+  K  S+V NR+IV+RDN RFH F+ G CSC DYW
Sbjct: 824 LNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 144/317 (45%), Gaps = 47/317 (14%)

Query: 114 QLINGYPQEVFAIYLYLVTRTV--LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
           Q+I+G   ++  +    V   +  +  KCG ++E  ++F+ +P R+++SWN++I  ++  
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSEN 180

Query: 172 GMYREGLGLLSKM--GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
           G  +E      +M  G E   PD  T+V+++       D+E G  +H    +  +     
Sbjct: 181 GFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELM 240

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           + N L+DMY KC  + EAQ L  +   D+ ++V W +++ GY +  E D  R  +     
Sbjct: 241 VNNSLIDMYSKCRFLSEAQLLFDKN--DKKNIVSWNSMIGGYAR--EEDVCRTFY----- 291

Query: 290 RNLISWTLMISGMLNQDAEFKYKSCASIGAL--------------YHGI-WVHVYIKKNQ 334
                   ++  M  +DA+ K      +  L               HG  W H  ++ N+
Sbjct: 292 --------LLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRH-GLQSNE 342

Query: 335 ISIDNIELAYD----------LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
           +  +    AY           +F  +  K V  W +++  YA     +KA+DL+L+M ++
Sbjct: 343 LVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDS 402

Query: 385 GTKPDQVTFIALLSACS 401
           G  PD  T  +LL ACS
Sbjct: 403 GLDPDWFTIGSLLLACS 419



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 31/292 (10%)

Query: 130 LVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAE 187
           L TR + + + CG   +   +FDKL  +++  WN ++S YT   ++ + + + S++    
Sbjct: 36  LNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVT 95

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
              PD  T+  +I A   L DL +G+ +H    +  +     + N L+ MY KCG + EA
Sbjct: 96  EHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEA 155

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV--ERNLISWTLMISGMLNQ 305
            K+     + E ++V W +++ G+ ++    E+   F EM+  E + +     +  +L  
Sbjct: 156 VKVF--EHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVL-- 211

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEI 350
                   CA    +  G+ VH    K     ++ ++N           +  A  LF + 
Sbjct: 212 ------PVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKN 265

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSAC 400
            +KN+  W S+I  YA      +   L  +M  E+   K D+ T + +L  C
Sbjct: 266 DKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 33/227 (14%)

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-LVDMYFKCGKIGEAQKLLGRY 254
           M  L+ A  + +D+E+G+ LH  +  ST   +  +LN  ++ MY  CG   +++ +  + 
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDK- 59

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLISWTLMISGMLNQDAEFKY 311
            +   ++  W  +VS Y ++   ++A  +F E++   E    ++TL              
Sbjct: 60  -LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCV----------I 108

Query: 312 KSCA-----SIGALYHGIWVH------VYIKKNQISIDN----IELAYDLFSEISEKNVY 356
           K+CA      +G + HG+         V++    I++      +E A  +F  + E+N+ 
Sbjct: 109 KACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLV 168

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSACS 401
            W S+I  ++  G  Q++ + F EM   E    PD  T + +L  C+
Sbjct: 169 SWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCA 215



 Score = 39.3 bits (90), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 103/236 (43%), Gaps = 26/236 (11%)

Query: 39  PVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + ++ V  +CS +      + +H   +  +L  D  +S+ + +     G +G +Q+I
Sbjct: 507 PYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRI 566

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV---------TRTVLLNKC---GKL 143
             +  E ++  WN II    I+G  +E   ++  ++         T T +L  C   G +
Sbjct: 567 FDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLV 626

Query: 144 KEVCQLFDKLPNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           ++  + F+++ N   I      +  ++      G   + L L+ +M  +   PD     S
Sbjct: 627 EDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD---PDSRIWSS 683

Query: 199 LISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           L+S+     +L +G+ + +  LE    K    +L  + +++   GK  + +++ GR
Sbjct: 684 LLSSCRIHGNLGLGEKVANKLLELEPEKPENYVL--ISNLFAGSGKWDDVRRVRGR 737


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 195/535 (36%), Positives = 306/535 (57%), Gaps = 50/535 (9%)

Query: 148 QLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTK 205
           ++F K+    +V  WNT+I  Y  +G     + L  +M A G V PD  T   L+ A  K
Sbjct: 74  KVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGK 133

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
           + D+ +G+ +H  +  S     GSL+   N L+ +Y  CG +  A K+  +  + E D+V
Sbjct: 134 MADVRLGETIHSVVIRSGF---GSLIYVQNSLLHLYANCGDVASAYKVFDK--MPEKDLV 188

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            W ++++G+ ++ + +EA  L+ EM  + +      I  +L+        +CA IGAL  
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLS--------ACAKIGALTL 240

Query: 323 GIWVHVYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G   HVY+ K         + + +D       +E A  LF E+ +KN   WTS+I   A+
Sbjct: 241 GKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300

Query: 368 AGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
            G  ++AI+LF  ME + G  P ++TF+ +L ACSH G+V EG+++  + S  Y I+P++
Sbjct: 301 NGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRI 360

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+GCMVDLL RAG ++++  +I  MP+ P+V IW +LL AC  H +  LAE A   + +
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQ 420

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            +P + G +VLL+N+YA   R  D+ +IR ++   G++K  G+SL+E G  VH+F  GD 
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDK 480

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLIST 590
            +P ++ IY  L E+   L+ +G                +E +L  H E++A+AF LIST
Sbjct: 481 SHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLIST 540

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            E+  IR+V NL++C DCH  +K+ S+VYNREIV+RD  RFH F+ G CSC+DYW
Sbjct: 541 PERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 142/309 (45%), Gaps = 33/309 (10%)

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGS-----LLNYLVDMYFKCGKIGEAQKLLGRY 254
           +S+ TKLR       +H F   + + IS +     L+ YLV +      +  A K+  + 
Sbjct: 27  VSSLTKLR------QIHAFSIRNGVSISDAELGKHLIFYLVSLP-SPPPMSYAHKVFSKI 79

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-----VERNLISWTLMISGMLNQDAEF 309
           E   ++V +W TL+ GY +      A  L+ EM     VE +  ++  ++   + + A+ 
Sbjct: 80  E-KPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKA-VGKMADV 137

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAY 365
           +         +  G    +Y++ + + +     ++  AY +F ++ EK++  W SVI  +
Sbjct: 138 RLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGF 197

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK-- 423
           A  G  ++A+ L+ EM+  G KPD  T ++LLSAC+  G +      L K+  VY IK  
Sbjct: 198 AENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALT-----LGKRFHVYMIKVG 252

Query: 424 --PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
               +     ++DL  R G +EE+      M     VS W+SL+     +   K A   F
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS-WTSLIVGLAVNGLGKEAIELF 311

Query: 482 KHLTETDPL 490
           K++   + L
Sbjct: 312 KNMESKEGL 320



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 50/272 (18%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           E IHS +I +       +   +       GD+  A ++  +  E ++  WNS+I     N
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200

Query: 118 GYPQEVFAIY-----------------------------------LYLV---------TR 133
           G P+E  A+Y                                   +Y++         + 
Sbjct: 201 GKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSS 260

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGV 189
            VLL+   +CG+++E   LFD++ +++ +SW ++I      G+ +E + L   M   EG+
Sbjct: 261 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGL 320

Query: 190 SPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
            P E+T V ++ A +    ++ G +      EE  ++        +VD+  + G++ +A 
Sbjct: 321 LPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAY 380

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           + + +  + + +VV+W TL+       + D A
Sbjct: 381 EYILKMPM-QPNVVIWRTLLGACTVHGDSDLA 411


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 187/544 (34%), Positives = 292/544 (53%), Gaps = 62/544 (11%)

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           + +I  + S G  +  L L + +   G+ P   T+ SL+ +      +   + L L +  
Sbjct: 57  DALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAVHA 116

Query: 222 STMKI--SGSLL--NYLVDMYFKC-GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
             +++  +G LL  N L+ ++    G++ +A  LL       VD   + TL++ + ++  
Sbjct: 117 HAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLL--RTSAAVDASTFNTLITAHARAGR 174

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLNQD---------AEFKYK--------------S 313
             +AR LFDEM ERN +SW+ M++G +            ++ + +              +
Sbjct: 175 VADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAA 234

Query: 314 CASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLFSEISEKNVYLW 358
           CA +GAL  G WVH Y+K N I +                 ++L  ++F  + +KNV  W
Sbjct: 235 CAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAW 294

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T++I   AM G    ++ LF +ME +G KPD + FI  L AC+H GLVD+G +  +    
Sbjct: 295 TTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVN 354

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            Y IKPK++HYGCMVDLL R G L E+ + +  MP+ PD  IW +L+  CR H+NV+LAE
Sbjct: 355 NYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAE 414

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
           +  KH  E +P   GA+VLL NIY+ +GR      IR  +R+ G++K  G S +E  G +
Sbjct: 415 YVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVI 474

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIE-----------------MTLQQQGLQETSLQHRERL 581
           H+F  GD+ +P  ++I     EI+                 + ++++ ++    +H E+L
Sbjct: 475 HQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKL 534

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AF LIST +   IRIV NLR+C DCH   K+ S+VY REI++RD  RFH F+ G CSC
Sbjct: 535 AIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSC 594

Query: 642 RDYW 645
           +DYW
Sbjct: 595 KDYW 598



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 131/262 (50%), Gaps = 28/262 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G++ +   LFD++P R+ +SW+ M++ Y   G  RE LG+ S+M A+GV PD+  +V 
Sbjct: 171 RAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVG 230

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           +++A  +L  LE GK +H +L+ + ++++  L   LVDMY KCG++    ++     + +
Sbjct: 231 VLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVF--EGMKD 288

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +V+ WTT++ G        ++  LF +M            SG+   D  F    CA   
Sbjct: 289 KNVLAWTTMIKGLAMHGRGSDSLTLFSQMES----------SGVKPDDIAFIGALCACT- 337

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
             + G+     + K +   +++   Y +  +I       +  ++   A  G   +A D+ 
Sbjct: 338 --HTGL-----VDKGRELFNSMVNNYGIKPKIEH-----YGCMVDLLARNGLLSEARDM- 384

Query: 379 LEMEETGTKPDQVTFIALLSAC 400
             +E+   KPD + + AL++ C
Sbjct: 385 --VEKMPMKPDALIWGALMAGC 404


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 302/560 (53%), Gaps = 60/560 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L     L  +  +   I + + I  ++S G++  GL LLS M +EG+ P   T+ + +
Sbjct: 70  GRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASL 129

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A    R L +G+ LH +  +  +     +   L+ MY + G    A+ L    E+ +  
Sbjct: 130 PA---CRGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFD--EMPDPH 184

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLN 304
           VV  T +++ Y      D+ARRLFD +  ++ I W  MI G                ML 
Sbjct: 185 VVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLR 244

Query: 305 QDAE-------FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------- 346
             AE           + A +G +  G W+H Y+K ++    N+ +A  L           
Sbjct: 245 SSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLE 304

Query: 347 -----FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
                F  I  K++ +W ++I  YAM G ++KA+++F+++ + G  P  +TFI LL+ACS
Sbjct: 305 DAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACS 364

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GLV+EG  F       Y I PK++HYGCMVDLLGRAG +EE+ + + S+ I PD  +W
Sbjct: 365 HSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMW 424

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            SLL ACR H+N+ L +     L      N G ++LL+NIYA  G+ ++++R+R  ++  
Sbjct: 425 VSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKAS 484

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-----------L 570
           G++K+ G S IE    V++F +GD+ +P ++EIY ML+++   +++ G           L
Sbjct: 485 GIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDL 544

Query: 571 QETSLQ-----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
            E + +     H E+LAVAFGLIS+   +TI+IV NLR C DCH+ +K+ S++ +R+IV 
Sbjct: 545 DEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVF 604

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F  G C+C DYW
Sbjct: 605 RDRNRFHHFVDGSCTCGDYW 624



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 104/222 (46%), Gaps = 17/222 (7%)

Query: 93  QQIIRQGDEPE----------IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN---K 139
           ++++R   EP+          +    ++   + ++ Y +    + L +   T L++   K
Sbjct: 240 RRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCK 299

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG L++   +F  + N+D++ WN MI+ Y   G  R+ L +  ++  +G+ P ++T + L
Sbjct: 300 CGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGL 359

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEID 257
           ++A +    +E G++    +E     I   + +Y  +VD+  + G I EA  L+    I 
Sbjct: 360 LNACSHSGLVEEGRSFFQSMEHE-YGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTIT 418

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
             D V+W +L++           +R+ D +V   L +  + I
Sbjct: 419 P-DAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYI 459


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 203/579 (35%), Positives = 310/579 (53%), Gaps = 57/579 (9%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           ++I   II   LI  +      I L  ++R  L +    +    Q+F ++       +N 
Sbjct: 85  LQIHAHIIRTSLIQNH-----FISLQFLSRAAL-SPSRDMGYSSQVFSQIMKPSGSQYNV 138

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MI  Y+      +G  L  +M   GV P+ ++   ++ +  ++  L  G  +H  +    
Sbjct: 139 MIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDG 198

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
            +    LL  L+D+Y  C K  EA K+    EI + D V W  L+S  + +    +A R+
Sbjct: 199 HQSDNLLLTTLMDLYSCCDKFEEACKVFD--EIPQWDTVSWNVLISCCIHNRRTRDALRM 256

Query: 284 FDEM------VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN---- 333
           FD M       E + ++  L++            ++CA++GAL  G  VH YI+++    
Sbjct: 257 FDIMQSTADGFEPDDVTCLLLL------------QACANLGALEFGERVHNYIEEHGYDG 304

Query: 334 QISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
            +++ N           +E AY +F  + E+NV  W+++I+ +AM G+ ++AI+ F +M+
Sbjct: 305 ALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQ 364

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
           + G  PD  T   +LSACSH GLVD+G  F  + S+V+ I+P + HYGCMVDLLGRAG L
Sbjct: 365 QLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLL 424

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           +++   I SM I PD ++W +LL ACR H++  L E    HL E      G +VLL NIY
Sbjct: 425 DQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIY 484

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE 562
           +  G  D ++ +R  +++ G++   G S IE  G VH+F   DI +P ++EIY ML+EI 
Sbjct: 485 SSVGNWDKVTDLRKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIG 544

Query: 563 MTLQQQG-LQETSLQ---------------HRERLAVAFGLISTSEKTTIRIVNNLRICG 606
             L+  G + E S +               H E+LA+AFG+++T   TTIR+  NLRIC 
Sbjct: 545 KQLKIAGYVAELSSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICV 604

Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           DCH+F KV S  YNRE+VIRD  RFH F+ GQCSC  YW
Sbjct: 605 DCHNFAKVLSGAYNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 180/410 (43%), Gaps = 83/410 (20%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFE--FLVFTGDLGYAQQIIRQGDE 101
           +I + +SCS      +IH+H+I T+L+++  IS Q      L  + D+GY+ Q+  Q  +
Sbjct: 71  LISLIKSCSKKTHLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMK 130

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIY---------------------------------- 127
           P    +N +I    ++  P++ F +Y                                  
Sbjct: 131 PSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQI 190

Query: 128 -------------LYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
                        L L T   L + C K +E C++FD++P  D +SWN +ISC       
Sbjct: 191 HARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRT 250

Query: 175 REGLGLLSKM--GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
           R+ L +   M   A+G  PD+VT + L+ A   L  LE G+ +H ++EE     + +L N
Sbjct: 251 RDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCN 310

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            L+ MY +CG++ +A  +  R  +DE +VV W+ ++SG+       EA   F++M +  +
Sbjct: 311 SLITMYSRCGRLEKAYSIFKR--MDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGV 368

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS- 351
                 ++G+L+        +C+  G +  G+                 + +D  S++  
Sbjct: 369 SPDDQTLTGVLS--------ACSHCGLVDDGL-----------------MFFDRMSKVFG 403

Query: 352 -EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
            E N++ +  ++     AG   +A  L + M     KPD   +  LL AC
Sbjct: 404 IEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMV---IKPDSTLWRTLLGAC 450


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 197/568 (34%), Positives = 300/568 (52%), Gaps = 65/568 (11%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL--SKMGAEGVSPDEV 194
           L+K G +    +LF  LPN D   +NT+   + S+      L LL  S M    V+P+  
Sbjct: 46  LSKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQ-TPSLSLLFYSHMLQHCVTPNAF 104

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  SLI A  KL   E  K LH  + +         LN L+ +YF  G + +A+++    
Sbjct: 105 TFPSLIRA-CKLE--EEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVF--C 159

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQD------- 306
            + + +VV WT+LVSGY +    DEA R+F+ M  ++N +SW  MI+  +  +       
Sbjct: 160 TMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFA 219

Query: 307 -----------------AEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------- 339
                            A     +C  +GAL  G+W+H Y++K  I +D+          
Sbjct: 220 LFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMY 279

Query: 340 -----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTF 393
                ++ A+ +F  +  K V  W  +I  +AM G  + AI LF EMEE     PD +TF
Sbjct: 280 CKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITF 339

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           + +L+AC+H GLV+EG+ +      V+ I P  +HYGCMVDLL RAG LEE+   I  MP
Sbjct: 340 VNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMP 399

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           + PD ++  +LL ACR H N++L E     + E DP N G +V+L N+YA  G+ + ++ 
Sbjct: 400 MSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAG 459

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--- 570
           +R  + D G+KK+ G+S+IE  G V++F +G   +P +E IY  + E+  +++  G    
Sbjct: 460 VRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPD 519

Query: 571 -------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
                        +     H E+LA+A+GL+ T    T+R+  NLR+C DCH   K+ S+
Sbjct: 520 TDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISK 579

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           VY+ +I+IRD  RFH F  G+CSC+DYW
Sbjct: 580 VYDCDIIIRDRSRFHHFSNGECSCKDYW 607


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 191/539 (35%), Positives = 299/539 (55%), Gaps = 39/539 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           +  KC  +    +LFD+ P   +  + +N+++S Y      ++ + L  +M   GV  + 
Sbjct: 54  MYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEING 113

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           VTM+ L+       +L +G  +H F  +  + +  S+ N L+ MY K G+I   +KL   
Sbjct: 114 VTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFD- 172

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            E+    ++ W  +++GY ++   +    L+ EM  +      L + G+L+        S
Sbjct: 173 -EMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLS--------S 223

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           CA +GAL  G  V   ++    S +               N++ A D+F  +  K+V  W
Sbjct: 224 CAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSW 283

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T++I  Y M G  + A+ LF EM   G KPD   F+++LSACSH GL ++G D+     R
Sbjct: 284 TAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMER 343

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            Y ++P  +HY CMVDLLGRAG L E+   I SM +  D ++W +LL AC+ H+NV+LAE
Sbjct: 344 KYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAE 403

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            AF+ + E +P N G +VLL+N+Y +AG L+ + R+RM +R   LKK  G S +E  G V
Sbjct: 404 LAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRV 463

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQ-QGLQETSLQ-----------HRERLAVAFG 586
           H F +GD  +P + EIY  LNE+E  ++   G ++   +           H E+LAVAF 
Sbjct: 464 HLFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKNDHERREEYLNSMGVHSEKLAVAFA 523

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           L++T ++T I I+ NLRICGDCH F+K+ S++ +R+ V+RD  RFH F+ G CSC++YW
Sbjct: 524 LLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 138/321 (42%), Gaps = 25/321 (7%)

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G SP+  T    I +   L     GK LH  + ++   +   +   L+ MY KC  I  A
Sbjct: 5   GASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNA 64

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           +KL           V + +L+SGY  ++   +   LF EM E  +    + + G++    
Sbjct: 65  RKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV---- 120

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISE 352
               + C   G L  G+ VH +  K  + +D+               I+    LF E+  
Sbjct: 121 ----QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPR 176

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           K +  W ++I  YA  G A   ++L+ EME  G  PD +T + +LS+C+H G +  G + 
Sbjct: 177 KGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKE- 235

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
           + +K   +           +V++  R G+L+++ +    MP+   VS W++++     H 
Sbjct: 236 VERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVS-WTAIIGGYGMHG 294

Query: 473 NVKLAEHAFKHLTETDPLNDG 493
             ++A   F  +       DG
Sbjct: 295 QGEVAVGLFDEMIRGGIKPDG 315


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 210/653 (32%), Positives = 326/653 (49%), Gaps = 82/653 (12%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQGDEPEIKIWN 108
           CSS+   ++IH+ +  T L  DP +  ++      T    L YA ++      P+  + N
Sbjct: 12  CSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHN 71

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
           ++I +  ++  P      ++ L  +  L                  + D  ++   +   
Sbjct: 72  TLIRSLSLSQTPLSSLHPFIQLRRQPTL------------------SPDSFTFAFALKAV 113

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
            +    R G+ L S+    G         +LIS   +  D   G    +F E S   +  
Sbjct: 114 ANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGD--SGSARRVFDEMSEPNV-- 169

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
              N ++   F+CG +  AQ + G   +   ++  W  +++GY K+ E   ARR+F EM 
Sbjct: 170 VTWNAVLTAAFRCGDVEGAQDVFGCMPVR--NLTSWNGMLAGYAKAGELGLARRVFYEMP 227

Query: 289 ERNLISWTLMISGMLNQ---DAEFKY--------------------KSCASIGALYHGIW 325
            R+ +SW+ MI G  +    D  F +                     +CA  GA   G  
Sbjct: 228 LRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKI 287

Query: 326 VHVYIKK---------NQISID------NIELAYDLFSEIS-EKNVYLWTSVIAAYAMAG 369
           +H +++K         N   ID      N+ +A  +F  +   +++  WTS+IA  AM G
Sbjct: 288 LHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHG 347

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
             ++AI LF EMEE+G +PD +TFI+LL ACSH GLV+EG    SK   +Y I+P ++HY
Sbjct: 348 CGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHY 407

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GCMVDL GRA  L+++  FI  MP+ P+  IW +LL AC  H N+++AE     L E DP
Sbjct: 408 GCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDP 467

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            N G HVLL+N+YA AG+  D+S IR  + +  +KK  G+S+IE    ++ F +G+  N 
Sbjct: 468 DNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNE 527

Query: 550 HSEEIYLMLNEIEMTL-----------------QQQGLQETSLQHRERLAVAFGLISTSE 592
            +EE +  L EI + L                 +++  +++  +H E+LA AFG+    +
Sbjct: 528 VTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPK 587

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              +RIV NLR+CGDCH+ MK+ S+VY  EI++RD  RFH F+ G CSCRDYW
Sbjct: 588 GRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 198/544 (36%), Positives = 298/544 (54%), Gaps = 45/544 (8%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP--DEV 194
           L+  G L     + + L  ++    NTMI  Y+      + L L   M  +  SP  D+ 
Sbjct: 38  LSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKF 97

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T   L+ +  +L+   +GK LH  + +S ++    + N L+ MY  CGK G A K+ G+ 
Sbjct: 98  TYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGK- 156

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + + DVV WT+++ G+V  +   EA RLF+EMVE  +      +  +L        ++C
Sbjct: 157 -MRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVL--------RAC 207

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
           A  GA+  G  V   I++ +I ++               +I  A  +F  I  K+V+ WT
Sbjct: 208 ADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWT 267

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I+  A  G  ++A+ LF +ME  G +PD+ T  A+LSAC + G   EG+ + +     
Sbjct: 268 AMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCK 327

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           Y IKP +QHYGCMVDLL R GHL+E+  FI  MPI PDV +W +L+ A + H ++  +E 
Sbjct: 328 YGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQ 387

Query: 480 AFKH--LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
             K   L + D  + G++VLL N+YA AG+  D +++R  +   GL K  G S IE  G 
Sbjct: 388 LMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGL 447

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------QETSLQ---HRERL 581
           VH+F +GD  +  +E+IY  L+E+E  L+ +G              +E + Q   H E+L
Sbjct: 448 VHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKL 507

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           AVAFGLI TS  T IRIV NLR C DCHS +K+ S++Y ++I++RD  RFH F  G CSC
Sbjct: 508 AVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSC 567

Query: 642 RDYW 645
           +DYW
Sbjct: 568 KDYW 571


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 185/517 (35%), Positives = 283/517 (54%), Gaps = 41/517 (7%)

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           + +N ++S Y S     + + L  +M  EGV  + VT++ LI A     +LE+G +LH  
Sbjct: 109 VCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS 168

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
             +       S++N  + MY KCG +  AQKL    E+    ++ W  +VSGY ++    
Sbjct: 169 TLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD--EMPVKGLISWNAMVSGYAQNGLAT 226

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID 338
               L+  M    +    + + G+L+        SCA++GA   G  V   ++ +  + +
Sbjct: 227 NVLELYRNMDMNGVHPDPVTLVGVLS--------SCANLGAQSVGHEVEFKMQASGFTSN 278

Query: 339 ---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                          N+  A  +F  + E+ +  WT++I  Y M GH + A+ LF EM  
Sbjct: 279 PFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR 338

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
           +G +PD   F+ +LSACSH GL D+G ++     R Y ++P  +HY CMVDLLGRAG L+
Sbjct: 339 SGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLK 398

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           E+   I SMPI PD ++W +LL AC+ H+NV+LAE AF+ + E +P N G +VLL+NIY+
Sbjct: 399 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYS 458

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
            A     + RIR+ +++  LKK  G S +E  G VH F  GD  +  S+EIY +L E+E 
Sbjct: 459 NANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEA 518

Query: 564 TLQQQ---------------GLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDC 608
            + Q+               G     + H E+LAVAFGL++T+    + I+ NLRIC DC
Sbjct: 519 IIMQEFGKPEKDNREESNKDGFTRVGV-HSEKLAVAFGLLNTTTGAEVVIIKNLRICEDC 577

Query: 609 HSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           H F K+ S++ +R++ +RD  RFH F+ G CSC+DYW
Sbjct: 578 HLFFKMVSKIVHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 32/264 (12%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +    +LFD++P + +ISWN M+S Y   G+    L L   M   GV PD VT+V 
Sbjct: 190 KCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVG 249

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++S+   L    +G  +   ++ S    +  L N L++MY +CG + +AQ +     + E
Sbjct: 250 VLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFD--GMPE 307

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF--KYKSCAS 316
             +V WT ++ GY      + A +LF EM+           SG+      F     +C+ 
Sbjct: 308 RTLVSWTAIIGGYGMHGHGEIAVQLFKEMIR----------SGIEPDGTAFVCVLSACSH 357

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            G    G+     +K+N          Y L     E     ++ ++     AG  ++A  
Sbjct: 358 AGLTDQGLEYFKMMKRN----------YQL-----EPGPEHYSCMVDLLGRAGRLKEAQT 402

Query: 377 LFLEMEETGTKPDQVTFIALLSAC 400
           L   +E    KPD   + ALL AC
Sbjct: 403 L---IESMPIKPDGAVWGALLGAC 423


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 192/537 (35%), Positives = 298/537 (55%), Gaps = 33/537 (6%)

Query: 135 VLLNKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           V  +KC ++ +  +LF  +   ++V+SW  +IS Y   G     + L  +M  EGV P+ 
Sbjct: 337 VAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNH 396

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T  ++++A   +   +    +H  + ++  + S S+   L D Y K G   EA K+   
Sbjct: 397 FTYSTILTANAAVSPSQ----IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFEL 452

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLF----DEMVERNLISWTLMISGMLNQDAEF 309
             IDE D+V W+ ++SGY +  + + A ++F     E VE N  +++ +++      A  
Sbjct: 453 --IDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASV 510

Query: 310 ----KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
               ++ SC+      + + V   +        NIE A ++F    ++++  W S+I+ Y
Sbjct: 511 EQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGY 570

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
           A  G  +K++ +F EM     + D +TFI ++SAC+H GLV+EG  +     + Y+I P 
Sbjct: 571 AQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPT 630

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
           M+HY CMVDL  RAG LE++ + I  MP P   +IW +LL ACR H NV+L E A + L 
Sbjct: 631 MEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLI 690

Query: 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM-GLKKQLGYSLIEQGGFVHKFTSG 544
              P +  A+VLL+NIYA AG   + +++R KL DM  +KK+ GYS IE       F +G
Sbjct: 691 SLQPQDSAAYVLLSNIYATAGNWQERAKVR-KLMDMKKVKKEAGYSWIEVKNKTFSFMAG 749

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLI 588
           D+ +P S+ IYL L E+ + L+  G                +E  L QH ERLA+AFGLI
Sbjct: 750 DLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLI 809

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +T   T I+IV NLR+CGDCH+ +K+ S++  R+IV+RD+ RFH F+GG CSC DYW
Sbjct: 810 ATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 170/356 (47%), Gaps = 21/356 (5%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD + NR+ +SWN+MI+ + + G+  E   L  +M  EGV   +    ++I     +++
Sbjct: 250 VFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKE 309

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           +   K LH  + ++      ++   L+  Y KC +I +A KL       + +VV WT ++
Sbjct: 310 MSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQ-NVVSWTAII 368

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY------H 322
           SGYV++   D A  LF +M    +       S +L  +A     S + I AL       +
Sbjct: 369 SGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV---SPSQIHALVVKTNYEN 425

Query: 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
              V   +  +   I +   A  +F  I EK++  W+++++ YA  G  + A+ +FL++ 
Sbjct: 426 SPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLA 485

Query: 383 ETGTKPDQVTFIALLSACSH-GGLVDEGYDFLSKKSRVYNIKPKMQHYGC----MVDLLG 437
           + G +P++ TF ++L+AC+     V++G  F S      +IK    +  C    +V +  
Sbjct: 486 KEGVEPNEFTFSSVLNACAAPTASVEQGKQFHS-----CSIKSGFSNALCVSSALVTMYA 540

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           + G++ ESAN +    +  D+  W+S++     H   K +   F+ +   +   DG
Sbjct: 541 KRGNI-ESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDG 595



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 133/269 (49%), Gaps = 28/269 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD++  ++V+SW ++++ Y   G+  + L L S+M  EG+ P+  T  +++       
Sbjct: 148 RVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADG 207

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            +E G  +H  + +S +  +  + N +V+MY K   + +A+ +    E    + V W ++
Sbjct: 208 AVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME--NRNAVSWNSM 265

Query: 268 VSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           ++G+V +    EA  LF  M +E   ++ T+  + +         K CA+I  +     +
Sbjct: 266 IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVI---------KLCANIKEMSFAKQL 316

Query: 327 HVYIKKNQISID-NIE----LAYDLFSEISE-----------KNVYLWTSVIAAYAMAGH 370
           H  + KN    D NI+    +AY   SEI +           +NV  WT++I+ Y   G 
Sbjct: 317 HCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGR 376

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSA 399
             +A++LF +M   G +P+  T+  +L+A
Sbjct: 377 TDRAMNLFCQMRREGVRPNHFTYSTILTA 405



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 121/314 (38%), Gaps = 82/314 (26%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           QLFD+ P + +   N ++  ++     +E L L   +   G   D  ++  ++     L 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D  +GK +H                       KCG +               DV + T+L
Sbjct: 107 DRIVGKQVHC-------------------QCIKCGFVE--------------DVSVGTSL 133

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA---------------E 308
           V  Y+K+   ++  R+FDEM  +N++SWT +++G     LN+ A                
Sbjct: 134 VDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNP 193

Query: 309 FKYKSC----ASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSE 349
           F + +     A+ GA+  G+ VH  + K    + I + N           +  A  +F  
Sbjct: 194 FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-------- 401
           +  +N   W S+IA +   G   +A +LF  M   G K  Q  F  ++  C+        
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 402 ---HGGLVDEGYDF 412
              H  ++  G DF
Sbjct: 314 KQLHCQVIKNGSDF 327


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 177/542 (32%), Positives = 296/542 (54%), Gaps = 43/542 (7%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            L  KCG L    ++FD++P+   + W  +I+ Y   G  RE + +     A G+ PD  T
Sbjct: 594  LYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFT 653

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             V +++A  ++ DL  G+ +    E+  +  S  +    VD+Y KCG++ +A+++  +  
Sbjct: 654  AVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDK-- 711

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
            +   D V W  +V GY  +    EA  LF  M    +      ++G L+        +C 
Sbjct: 712  MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS--------ACT 763

Query: 316  SIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSEISEKNVYLWT 359
             +GAL  G      +  ++  +DN  L                A+ +F ++ +K++ +W 
Sbjct: 764  RLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWN 822

Query: 360  SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
            ++I    M GH + A  L  +ME++G K +  TFI LL +C+H GL+ +G  +    +++
Sbjct: 823  AMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 882

Query: 420  YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
            Y+I P+++HYGCMVDLL RAG L+E+   +  MP+P +  I  +LL  C+ H+N +LAEH
Sbjct: 883  YHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEH 942

Query: 480  AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
              K L   +P N G +V+L+NIY+  GR +D +++R+ ++  G++K    S +E  G VH
Sbjct: 943  VLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVH 1002

Query: 540  KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQHRERLAV 583
            +F  GD  +P S++IY  L+E+ + ++  G + T+                + H E+LA+
Sbjct: 1003 EFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAI 1062

Query: 584  AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
            AF L+ T    TIR+  NLR+C DCH+ +K+ S++ +REI++RDN RFH F+ G CSC D
Sbjct: 1063 AFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCND 1122

Query: 644  YW 645
            YW
Sbjct: 1123 YW 1124



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 40/243 (16%)

Query: 190 SPDEVTM-VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           +P  +T+ ++L SA      L  G+ LH    +     +  +L  L+ +Y KCG +  AQ
Sbjct: 546 NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 605

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD-- 306
           ++    E+     V WT L++ Y+ + +  EA       V RN  +     +GM      
Sbjct: 606 RVFD--EMPHPSTVPWTALITAYMDAGDLREAVH-----VARNAFA-----NGMRPDSFT 653

Query: 307 AEFKYKSCASIGALYHG--IW------------------VHVYIKKNQISIDNIELAYDL 346
           A     +CA I  L  G  +W                  V +Y+K  +++      A ++
Sbjct: 654 AVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAK-----AREV 708

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F ++  K+   W +++  YA  GH ++A+DLFL M+  G KPD       LSAC+  G +
Sbjct: 709 FDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGAL 768

Query: 407 DEG 409
           D G
Sbjct: 769 DLG 771


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 193/522 (36%), Positives = 293/522 (56%), Gaps = 29/522 (5%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FDK+P++DV+SW T+I+ +   G +   L L  ++  EG+  D + + S++ A + L+ 
Sbjct: 440 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKL 499

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           +   K +H ++    +     L N +VD+Y +CG +  A ++    E    DVV WT+++
Sbjct: 500 ISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFK--DVVSWTSMI 556

Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASI----GAL 320
           S YV +   +EA  LF  M    VE + IS   ++S   +  A  K K         G +
Sbjct: 557 SCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFV 616

Query: 321 YHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
             G      +         +E + ++F+ I  K++ LWTS+I AY M G  + AIDLF  
Sbjct: 617 LEGSLASTLVDM-YARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRR 675

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           ME+    PD + F+A+L ACSH GL++EG  FL      Y ++P  +HY C+VDLLGRA 
Sbjct: 676 MEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRAN 735

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
           HLEE+  F+  M + P   +W +LL AC+ H N +L E A + L E DP N G +VL++N
Sbjct: 736 HLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSN 795

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           +Y+   R  D+  +RM+++  GLKK  G S IE G  VH F + D  +P S EIY  L++
Sbjct: 796 VYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQ 855

Query: 561 IEMTLQQQG-------------LQETSLQ----HRERLAVAFGLISTSEKTTIRIVNNLR 603
           I   L ++G              +E  +Q    H ERLA+A+G+++T E  ++RI  NLR
Sbjct: 856 ITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLR 915

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +CGDCH+F K+ S+ + RE+V+RD  RFH F+GG CSC D W
Sbjct: 916 VCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 130/519 (25%), Positives = 231/519 (44%), Gaps = 99/519 (19%)

Query: 34  FANVCP--VSLD-----VIMVERSCSSIDEFERIHSHLITTN-LMRDPQISTQVFEFLVF 85
           FAN  P   SLD     V+ +  S  ++ E +++H+H+IT+N L     +ST++      
Sbjct: 67  FANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGK 126

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP---------QEVFAIYLYLVTRTVL 136
            G L  A+++        I  WN++I   + NG P           V  I L   T   +
Sbjct: 127 CGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCI 186

Query: 137 LNKCGKLKE--------------------------------------VCQLFDKLPNR-D 157
           L  CG LK+                                        QLFD++P + D
Sbjct: 187 LKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKED 246

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
           V+SWN+MIS Y+S G   E L L  +M    ++P+  T V+ + A      ++ G  +H 
Sbjct: 247 VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHA 306

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
            + +S+  I+  + N L+ MY + GK+GEA  +   Y +D+ D + W +++SG+V++   
Sbjct: 307 TVLKSSYYINVFVANALIAMYARFGKMGEAANIF--YNMDDWDTISWNSMLSGFVQNGLY 364

Query: 278 DEARRLFDEMVER----NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
            EA + + EM +     +L++   +I+            + A  G   HG+ +H Y  KN
Sbjct: 365 HEALQFYHEMRDAGQKPDLVAVISIIA------------ASARSGNTLHGMQIHAYAMKN 412

Query: 334 QISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            +  D               +++    +F ++ +K+V  WT++IA +A  G   +A++LF
Sbjct: 413 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 472

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY---GCMVDL 435
            E++  G   D +   ++L ACS   L+        K+   Y I+  +        +VD+
Sbjct: 473 REVQLEGIDLDVMMISSILLACSGLKLISS-----VKEIHSYIIRKGLSDLVLQNGIVDV 527

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
            G  G+++ +A     +    DV  W+S++ +C  H  +
Sbjct: 528 YGECGNVDYAARMFELIEF-KDVVSWTSMI-SCYVHNGL 564



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 187/404 (46%), Gaps = 34/404 (8%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           GK+ E   +F  + + D ISWN+M+S +   G+Y E L    +M   G  PD V ++S+I
Sbjct: 331 GKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISII 390

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           +A  +  +   G  +H +  ++ +     + N LVDMY K   +     +  +  + + D
Sbjct: 391 AASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDK--MPDKD 448

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           VV WTT+++G+ ++     A  LF E+    +    +MIS +L         +C+ +  +
Sbjct: 449 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSIL--------LACSGLKLI 500

Query: 321 YHGIWVHVYIKKNQIS--------------IDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                +H YI +  +S                N++ A  +F  I  K+V  WTS+I+ Y 
Sbjct: 501 SSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYV 560

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIK 423
             G A +A++LF  M+ETG +PD ++ +++LSA +    + +G   + FL +K  V    
Sbjct: 561 HNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVL--- 617

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
            +      +VD+  R G LE+S N    +    D+ +W+S++ A   H   + A   F+ 
Sbjct: 618 -EGSLASTLVDMYARCGTLEKSRNVFNFIR-NKDLVLWTSMINAYGMHGCGRAAIDLFRR 675

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           + +     D  H+    +         M+  R  L  M  + QL
Sbjct: 676 MEDESIAPD--HIAFVAVLYACSHSGLMNEGRRFLESMKYEYQL 717



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 99/180 (55%), Gaps = 11/180 (6%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG +    ++F+ +  +DV+SW +MISCY   G+  E L L   M   GV PD +++VS
Sbjct: 530 ECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVS 589

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA   L  L+ GK +H FL      + GSL + LVDMY +CG + +++ +     I  
Sbjct: 590 ILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNF--IRN 647

Query: 259 VDVVLWTTLVSGY----VKSNERDEARRLFDEMVERNLISWTLMI-----SGMLNQDAEF 309
            D+VLWT++++ Y          D  RR+ DE +  + I++  ++     SG++N+   F
Sbjct: 648 KDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRF 707


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 177/542 (32%), Positives = 296/542 (54%), Gaps = 43/542 (7%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            L  KCG L    ++FD++P+   + W  +I+ Y   G  RE + +     A G+ PD  T
Sbjct: 570  LYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFT 629

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             V +++A  ++ DL  G+ +    E+  +  S  +    VD+Y KCG++ +A+++  +  
Sbjct: 630  AVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDK-- 687

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
            +   D V W  +V GY  +    EA  LF  M    +      ++G L+        +C 
Sbjct: 688  MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS--------ACT 739

Query: 316  SIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSEISEKNVYLWT 359
             +GAL  G      +  ++  +DN  L                A+ +F ++ +K++ +W 
Sbjct: 740  RLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWN 798

Query: 360  SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
            ++I    M GH + A  L  +ME++G K +  TFI LL +C+H GL+ +G  +    +++
Sbjct: 799  AMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 858

Query: 420  YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
            Y+I P+++HYGCMVDLL RAG L+E+   +  MP+P +  I  +LL  C+ H+N +LAEH
Sbjct: 859  YHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEH 918

Query: 480  AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
              K L   +P N G +V+L+NIY+  GR +D +++R+ ++  G++K    S +E  G VH
Sbjct: 919  VLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVH 978

Query: 540  KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQHRERLAV 583
            +F  GD  +P S++IY  L+E+ + ++  G + T+                + H E+LA+
Sbjct: 979  EFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAI 1038

Query: 584  AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
            AF L+ T    TIR+  NLR+C DCH+ +K+ S++ +REI++RDN RFH F+ G CSC D
Sbjct: 1039 AFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCND 1098

Query: 644  YW 645
            YW
Sbjct: 1099 YW 1100



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 40/243 (16%)

Query: 190 SPDEVTM-VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           +P  +T+ ++L SA      L  G+ LH    +     +  +L  L+ +Y KCG +  AQ
Sbjct: 522 NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 581

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD-- 306
           ++    E+     V WT L++ Y+ + +  EA       V RN  +     +GM      
Sbjct: 582 RVFD--EMPHPSTVPWTALITAYMDAGDLREAVH-----VARNAFA-----NGMRPDSFT 629

Query: 307 AEFKYKSCASIGALYHG--IW------------------VHVYIKKNQISIDNIELAYDL 346
           A     +CA I  L  G  +W                  V +Y+K  +++      A ++
Sbjct: 630 AVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAK-----AREV 684

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F ++  K+   W +++  YA  GH ++A+DLFL M+  G KPD       LSAC+  G +
Sbjct: 685 FDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGAL 744

Query: 407 DEG 409
           D G
Sbjct: 745 DLG 747


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 177/542 (32%), Positives = 296/542 (54%), Gaps = 43/542 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG L    ++FD++P+   + W  +I+ Y   G  RE + +     A G+ PD  T
Sbjct: 115 LYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFT 174

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            V +++A  ++ DL  G+ +    E+  +  S  +    VD+Y KCG++ +A+++  +  
Sbjct: 175 AVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDK-- 232

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D V W  +V GY  +    EA  LF  M    +      ++G L+        +C 
Sbjct: 233 MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALS--------ACT 284

Query: 316 SIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSEISEKNVYLWT 359
            +GAL  G      +  ++  +DN  L                A+ +F ++ +K++ +W 
Sbjct: 285 RLGALDLGRQAIRMVDWDEF-LDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWN 343

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I    M GH + A  L  +ME++G K +  TFI LL +C+H GL+ +G  +    +++
Sbjct: 344 AMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKL 403

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           Y+I P+++HYGCMVDLL RAG L+E+   +  MP+P +  I  +LL  C+ H+N +LAEH
Sbjct: 404 YHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEH 463

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
             K L   +P N G +V+L+NIY+  GR +D +++R+ ++  G++K    S +E  G VH
Sbjct: 464 VLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVH 523

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQHRERLAV 583
           +F  GD  +P S++IY  L+E+ + ++  G + T+                + H E+LA+
Sbjct: 524 EFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAI 583

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AF L+ T    TIR+  NLR+C DCH+ +K+ S++ +REI++RDN RFH F+ G CSC D
Sbjct: 584 AFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCND 643

Query: 644 YW 645
           YW
Sbjct: 644 YW 645



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 40/243 (16%)

Query: 190 SPDEVTM-VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           +P  +T+ ++L SA      L  G+ LH    +     +  +L  L+ +Y KCG +  AQ
Sbjct: 67  NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 126

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD-- 306
           ++    E+     V WT L++ Y+ + +  EA       V RN  +     +GM      
Sbjct: 127 RVFD--EMPHPSTVPWTALITAYMDAGDLREAVH-----VARNAFA-----NGMRPDSFT 174

Query: 307 AEFKYKSCASIGALYHG--IW------------------VHVYIKKNQISIDNIELAYDL 346
           A     +CA I  L  G  +W                  V +Y+K  +++      A ++
Sbjct: 175 AVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAK-----AREV 229

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F ++  K+   W +++  YA  GH ++A+DLFL M+  G KPD       LSAC+  G +
Sbjct: 230 FDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGAL 289

Query: 407 DEG 409
           D G
Sbjct: 290 DLG 292


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 303/552 (54%), Gaps = 60/552 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G++ +   LF+   +RD++SWNTMIS ++    + E L     M  EGV  D VT+ S
Sbjct: 160 KLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIAS 219

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQK----LLGR 253
           ++ A + L  L++GK +H ++  +   I  S + + LVDMY  C ++   ++    +LGR
Sbjct: 220 VLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR 279

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--Y 311
                  + LW  ++SGY ++   ++A  LF EM++         ++G+L          
Sbjct: 280 R------IELWNAMISGYARNGLDEKALILFIEMIK---------VAGLLPNTTTMASVM 324

Query: 312 KSCA-SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNV 355
            +C  S+ A+  G  +H Y  +N ++ D                + L+  +F+E+  KNV
Sbjct: 325 PACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNV 384

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEM-EETG----TKPDQVTFIALLSACSHGGLVDEGY 410
             W  +I A  M G  ++A++LF  M  E G     KP++VTFI + +ACSH GL+ EG 
Sbjct: 385 ITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGL 444

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD-VSIWSSLLRACR 469
           +   +    + ++P   HY C+VDLLGRAG LEE+   + +MP   D V  WSSLL ACR
Sbjct: 445 NLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACR 504

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            HQNV+L E A K+L   +P     +VLL+NIY+ AG  +    +R  +R MG+KK+ G 
Sbjct: 505 IHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGC 564

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS-------------- 574
           S IE    VHKF +GD+ +P SE+++  L  +   ++++G + +TS              
Sbjct: 565 SWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENL 624

Query: 575 -LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
              H E+LA+AFG+++T   TTIR+  NLR+C DCH+  K  S++  REI++RD  RFH 
Sbjct: 625 LCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHH 684

Query: 634 FQGGQCSCRDYW 645
           F+ G CSC DYW
Sbjct: 685 FKEGTCSCGDYW 696



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 158/377 (41%), Gaps = 65/377 (17%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P+R   SW   +   T    +RE +    +M   G  PD     +++ A + L+DL+ G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 214 NLHLFLEESTMKISG-SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
            +H    +     S  ++ N LV+MY KCG IG+                    L++ Y 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGD-------------KTFTNNALMAMYA 159

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQD------AEFK---------------- 310
           K    D+++ LF+  V+R+++SW  MIS     D      A F+                
Sbjct: 160 KLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIAS 219

Query: 311 -YKSCASIGALYHGIWVHVYIKKNQISIDN----------------IELAYDLFSEISEK 353
              +C+ +  L  G  +H Y+ +N   I+N                +E    +F  I  +
Sbjct: 220 VLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR 279

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHG-GLVDEGYD 411
            + LW ++I+ YA  G  +KA+ LF+EM +  G  P+  T  +++ AC H    + +G  
Sbjct: 280 RIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKG-- 337

Query: 412 FLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
              K+   Y I+  +         +VD+  + G L  S      MP   +V  W+ L+ A
Sbjct: 338 ---KEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMA 393

Query: 468 CRCHQNVKLAEHAFKHL 484
           C  H   + A   FK++
Sbjct: 394 CGMHGKGEEALELFKNM 410


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 201/601 (33%), Positives = 316/601 (52%), Gaps = 72/601 (11%)

Query: 107 WNSIIENQLINGYPQEVFAIY-----LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDV 158
           WN ++   + NG  +E   ++       L++   L+    K   L +  QLFD++P RDV
Sbjct: 173 WNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDV 232

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           ISWNTMIS Y  +G     L    ++  E    D  T  +++S   +   ++  +    +
Sbjct: 233 ISWNTMISGYAQVG----DLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARK---Y 285

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
            +E  +K   S  N ++  Y +  K+  A +L        +    W T+++GY ++    
Sbjct: 286 FDEMPVKNEISY-NAMLAGYVQYKKMVIAGELFEAMPCRNISS--WNTMITGYGQNGGIA 342

Query: 279 EARRLFDEMVERNLISWTLMISGM---------------LNQDAEFKYKS--------CA 315
           +AR+LFD M +R+ +SW  +ISG                + +D E   +S        CA
Sbjct: 343 QARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCA 402

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            I AL  G  VH  + K                     + + A D+F  I EK+V  W +
Sbjct: 403 DIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNT 462

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +IA YA  G  ++A+ LF  M++ G KPD++T + +LSACSH GL+D G ++     R Y
Sbjct: 463 MIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDY 522

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           N+KP  +HY CM+DLLGRAG LEE+ N + +MP  P  + W +LL A R H N +L E A
Sbjct: 523 NVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKA 582

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + + + +P N G +VLL+N+YA +GR  D+ ++R K+R+ G++K  GYS +E    +H 
Sbjct: 583 AEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHT 642

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVA 584
           F+ GD F+P  + IY  L E+++ ++++G +  T L                H E+LAVA
Sbjct: 643 FSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVA 702

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FG+++      IR++ NLR+C DCH+ +K  S++  R I++RD+ RFH F  G CSC DY
Sbjct: 703 FGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDY 762

Query: 645 W 645
           W
Sbjct: 763 W 763



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 59/341 (17%)

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQ 148
           LG A ++     + ++  WN+     +++GY Q  F                  + E  +
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNA-----MLSGYAQNGF------------------VDEARE 160

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F+K+P+R+ ISWN +++ Y   G  +E   L      E  S  E+   + +      R+
Sbjct: 161 VFNKMPHRNSISWNGLLAAYVHNGRLKEARRLF-----ESQSNWELISWNCLMGGYVKRN 215

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           + +G    LF       +     N ++  Y + G + +A++L     I   DV  WT +V
Sbjct: 216 M-LGDARQLFDRMPVRDVIS--WNTMISGYAQVGDLSQAKRLFNESPIR--DVFTWTAMV 270

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI---- 324
           SGYV++   DEAR+ FDEM  +N IS+  M++G +      +YK     G L+  +    
Sbjct: 271 SGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYV------QYKKMVIAGELFEAMPCRN 324

Query: 325 ---WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
              W  +     Q     I  A  LF  + +++   W ++I+ YA  GH ++A+++F+EM
Sbjct: 325 ISSWNTMITGYGQNG--GIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382

Query: 382 EETGTKPDQVTFIALLSACS-----------HGGLVDEGYD 411
           +  G   ++ TF   LS C+           HG +V  G++
Sbjct: 383 KRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFE 423



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 163/363 (44%), Gaps = 32/363 (8%)

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           K  + D+++WN  IS +   G     L + + M         V+  ++IS   +     +
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRR----SSVSYNAMISGYLRNAKFSL 95

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
            ++L   + E  +       N ++  Y +  ++GEA KL     + + DVV W  ++SGY
Sbjct: 96  ARDLFDKMPERDL----FSWNVMLTGYVRNRRLGEAHKLFDL--MPKKDVVSWNAMLSGY 149

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKSCASIGALYHGIWVH 327
            ++   DEAR +F++M  RN ISW  +++  ++    ++A   ++S ++   +     + 
Sbjct: 150 AQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMG 209

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
            Y+K+N +       A  LF  +  ++V  W ++I+ YA  G   +A  LF E       
Sbjct: 210 GYVKRNMLGD-----ARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE----SPI 260

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
            D  T+ A++S     G+VDE   +  +      +K ++  Y  M+    +   +  +  
Sbjct: 261 RDVFTWTAMVSGYVQNGMVDEARKYFDEMP----VKNEIS-YNAMLAGYVQYKKMVIAGE 315

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
              +MP   ++S W++++     +  +  A   F  + + D ++  A   + + YA+ G 
Sbjct: 316 LFEAMPC-RNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAA---IISGYAQNGH 371

Query: 508 LDD 510
            ++
Sbjct: 372 YEE 374


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 298/551 (54%), Gaps = 49/551 (8%)

Query: 132 TRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
            R +L++   KCG +     +F+ +  +D +SWN++IS Y   G   E + L   M    
Sbjct: 344 VRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIME 403

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
              D +T + LIS  T+L DL+ GK LH    +S + I  S+ N L+DMY KCG++G++ 
Sbjct: 404 EQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSL 463

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMISGMLNQD 306
           K+     +   D V W T++S  V+  +     ++  +M +  ++    T +++      
Sbjct: 464 KIFS--SMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVT------ 515

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEIS 351
                  CAS+ A   G  +H  + +    +++ I N           +E +  +F  +S
Sbjct: 516 ----LPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMS 571

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
            ++V  WT +I AY M G  +KA++ F +ME++G  PD V FIA++ ACSH GLVDEG  
Sbjct: 572 RRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLA 631

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
              K    Y I P ++HY C+VDLL R+  + ++  FI +MPI PD SIW+S+LRACR  
Sbjct: 632 CFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTS 691

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
            +++ AE   + + E +P + G  +L +N YA   + D +S IR  L+D  + K  GYS 
Sbjct: 692 GDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSW 751

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----QETSLQ----------- 576
           IE G  VH F+SGD   P SE IY  L  +   + ++G     +E S             
Sbjct: 752 IEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLI 811

Query: 577 --HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
             H ERLA+AFGL++T   T ++++ NLR+CGDCH   K+ S++  REI++RD  RFH F
Sbjct: 812 CGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLF 871

Query: 635 QGGQCSCRDYW 645
           + G CSC+D W
Sbjct: 872 KDGTCSCKDRW 882



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 184/393 (46%), Gaps = 44/393 (11%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
           GDL Y +QI+  G E ++ + N++++                       + ++ G L   
Sbjct: 125 GDLVY-EQILDMGFESDLFVGNALVD-----------------------MYSRMGLLTRA 160

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
            Q+FD++P RD++SWN++IS Y+S G Y E L +  ++    + PD  T+ S++ A   L
Sbjct: 161 RQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNL 220

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
             ++ G+ LH F  +S +     + N LV MY K  +  +A+++    E+D  D V + T
Sbjct: 221 LVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFD--EMDVRDSVSYNT 278

Query: 267 LVSGYVKSNERDEARRLFDEMVERN-----LISWTLMISGMLNQDAEFKY------KSCA 315
           ++ GY+K    +E+ R+F E +++       +S  L   G L   +  KY      K+  
Sbjct: 279 MICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF 338

Query: 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            + +    I + VY K       ++  A D+F+ +  K+   W S+I+ Y  +G   +A+
Sbjct: 339 VLESTVRNILIDVYAK-----CGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAM 393

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
            LF  M     + D +T++ L+S  +    +  G    S   +   I   +     ++D+
Sbjct: 394 KLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLSVSNALIDM 452

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
             + G + +S    +SM    D   W++++ AC
Sbjct: 453 YAKCGEVGDSLKIFSSMGT-GDTVTWNTVISAC 484



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/527 (21%), Positives = 221/527 (41%), Gaps = 65/527 (12%)

Query: 35  ANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
           + V P       V ++C+ + + E    ++  ++      D  +   + +     G L  
Sbjct: 100 SKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTR 159

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCGK 142
           A+Q+  +    ++  WNS+I     +GY +E   IY  L          T + +L   G 
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGN 219

Query: 143 LKEVCQ--------------------------------------LFDKLPNRDVISWNTM 164
           L  V Q                                      +FD++  RD +S+NTM
Sbjct: 220 LLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTM 279

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           I  Y  + M  E + +  +   +   PD +T+ S++ A   LRDL + K ++ ++ ++  
Sbjct: 280 ICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF 338

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
            +  ++ N L+D+Y KCG +  A+ +    E    D V W +++SGY++S +  EA +LF
Sbjct: 339 VLESTVRNILIDVYAKCGDMITARDVFNSMECK--DTVSWNSIISGYIQSGDLMEAMKLF 396

Query: 285 DEMV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI--- 337
             M+    + + I++ ++IS +  + A+ K+        +  GI + + +    I +   
Sbjct: 397 KMMMIMEEQADHITYLMLIS-VSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAK 455

Query: 338 -DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
              +  +  +FS +   +   W +VI+A    G     + +  +M ++   PD  TF+  
Sbjct: 456 CGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVT 515

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L  C+       G +      R +  + ++Q    ++++  + G LE S+     M    
Sbjct: 516 LPMCASLAAKRLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLENSSRVFERMS-RR 573

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           DV  W+ ++ A   +   + A   F  + ++  + D   V +A IYA
Sbjct: 574 DVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSV-VFIAIIYA 619



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 169/378 (44%), Gaps = 40/378 (10%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P ++V  WN++I  ++  G++ E L    K+    VSPD+ T  S+I A   L D EMG 
Sbjct: 67  PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            ++  + +   +    + N LVDMY + G +  A+++    E+   D+V W +L+SGY  
Sbjct: 127 LVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFD--EMPVRDLVSWNSLISGYSS 184

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAE------------FKYKSCASIGALY 321
               +EA  ++ E+    ++  +  +S +L                 F  KS  +   + 
Sbjct: 185 HGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVV 244

Query: 322 HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
           +   V +Y+K  + +      A  +F E+  ++   + ++I  Y      ++++ +FLE 
Sbjct: 245 NNGLVAMYLKFRRPTD-----ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN 299

Query: 382 EETGTKPDQVTFIALLSACSH---GGLVDEGYDFLSK-----KSRVYNIKPKMQHYGCMV 433
            +   KPD +T  ++L AC H     L    Y+++ K     +S V NI         ++
Sbjct: 300 LDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNI---------LI 349

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           D+  + G +  + +   SM     VS W+S++       ++  A   FK +   +   D 
Sbjct: 350 DVYAKCGDMITARDVFNSMECKDTVS-WNSIISGYIQSGDLMEAMKLFKMMMIMEEQAD- 407

Query: 494 AHVLLANIYAKAGRLDDM 511
            H+    + + + RL D+
Sbjct: 408 -HITYLMLISVSTRLADL 424


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 186/537 (34%), Positives = 294/537 (54%), Gaps = 40/537 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L+   QLFD +  R+V+SWN+MI  Y      +E + +  KM  EGV P +V+++ 
Sbjct: 283 KCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMG 342

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A   L DLE G+ +H    E  +  + S++N L+ MY KC ++  A  + G+  +  
Sbjct: 343 ALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK--LQS 400

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             +V W  ++ G+ ++    +A   F +M  R +   T     ++   AE        + 
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE--------LS 452

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
             +H  W+H  + ++ +  +                I +A  +F  +SE++V  W ++I 
Sbjct: 453 ITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMID 512

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y   G  + A++LF EM++   KP+ VTF++++SACSH GLV+ G          Y+I+
Sbjct: 513 GYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIE 572

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
             M HYG MVDLLGRAG L E+ +FI  MP+ P V+++ ++L AC+ H+NV  AE A + 
Sbjct: 573 LSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAER 632

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L E +P + G HVLLANIY  A   + + ++R+ +   GL+K  G S++E    VH F S
Sbjct: 633 LFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFS 692

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL--------------QHRERLAVAFGLI 588
           G   +P S++IY  L ++   +++ G + +T+L               H E+LA++FGL+
Sbjct: 693 GSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLL 752

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +T+  TTI +  NLR+C DCH+  K  S V  REIV+RD  RFH F+ G CSC DYW
Sbjct: 753 NTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 163/316 (51%), Gaps = 29/316 (9%)

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
           GDE E+++   I    + +G+  ++FA    +     +  KC ++ E  ++FD++P RD+
Sbjct: 146 GDEAELRVGKEIHGLLVKSGFSLDLFA----MTGLENMYAKCRQVNEARKVFDRMPERDL 201

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           +SWNT+++ Y+  GM R  L ++  M  E + P  +T+VS++ A + LR + +GK +H +
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY 261

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
              S      ++   LVDMY KCG +  A++L     + E +VV W +++  YV++    
Sbjct: 262 AMRSGFDSLVNISTALVDMYAKCGSLETARQLFD--GMLERNVVSWNSMIDAYVQNENPK 319

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH----------- 327
           EA  +F +M++  +    + + G L+        +CA +G L  G ++H           
Sbjct: 320 EAMLIFQKMLDEGVKPTDVSVMGALH--------ACADLGDLERGRFIHKLSVELGLDRN 371

Query: 328 VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
           V +  + IS+      ++ A  +F ++  + +  W ++I  +A  G    A++ F +M  
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 431

Query: 384 TGTKPDQVTFIALLSA 399
              KPD  T++++++A
Sbjct: 432 RTVKPDTFTYVSVITA 447



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 136/303 (44%), Gaps = 19/303 (6%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           NG  QE F    +      L  + G + E  ++F+ + ++  + ++TM+  +  +    +
Sbjct: 63  NGLYQEHF----FQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDK 118

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L    +M  + V P       L+       +L +GK +H  L +S   +    +  L +
Sbjct: 119 ALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY KC ++ EA+K+  R  + E D+V W T+V+GY ++     A  +   M E NL    
Sbjct: 179 MYAKCRQVNEARKVFDR--MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSF 236

Query: 297 LMISGMLNQDAEFKYKSCASIGALYHG----------IWVHVYIKKNQISIDNIELAYDL 346
           + I  +L   +  +     S+G   HG          + +   +        ++E A  L
Sbjct: 237 ITIVSVLPAVSALRL---ISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  + E+NV  W S+I AY    + ++A+ +F +M + G KP  V+ +  L AC+  G +
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL 353

Query: 407 DEG 409
           + G
Sbjct: 354 ERG 356


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 205/658 (31%), Positives = 326/658 (49%), Gaps = 81/658 (12%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI-- 106
           +SC ++     +H+    + L RDP +++ +    +  G  G A+ +      P+  +  
Sbjct: 28  KSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVG 87

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
           W++++      G  +  + +                L+E+ +     PN  VI+WN ++S
Sbjct: 88  WSALVAAHAARGDAEGAWRL----------------LEEMRRDGGVEPN--VITWNGLVS 129

Query: 167 CYTSMGMYREGLGLLSKMGAEGV-SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
                G  R+ +  L+ M  EG+  PD   +   +SA   +  + +G+ LH +  ++  +
Sbjct: 130 GLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCR 189

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
               ++  L+DMY KCG+  E  ++    E   +DV     L++G  ++ +  EA RLF 
Sbjct: 190 ADACVVTALIDMYGKCGQAAEVVRVFD--ESSHMDVASCNALIAGLSRNAQVCEALRLFK 247

Query: 286 EMVER----NLISWTLMISGMLNQDAEFK-----------------------YKSCASIG 318
           E V+R    N++SWT +++  +    + +                         + A++ 
Sbjct: 248 EFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVA 307

Query: 319 ALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
           AL HG   H           VY+    + +      ++ A  +F  +  +NV  W ++I 
Sbjct: 308 ALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIG 367

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            YAM G A  A+ +F  M +   KPD VTF  LL+AC+  GL +EG  +  +    Y + 
Sbjct: 368 GYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVS 427

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P+M+HY CMV LLGRAG L+E+ + I+ MP  PD  IW SLL +CR H NV LAE A + 
Sbjct: 428 PRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEK 487

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L   +P N G +VLL+NIYA     D ++R+R  ++D+GLKK+ G S IE    VH   +
Sbjct: 488 LFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLA 547

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQHRERLAVAFGL 587
           GD  +P    I   +N++ + +++ G   ++                  H E+LAVA GL
Sbjct: 548 GDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGL 607

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ISTS  TT+R++ NLRICGDCH  MK  S    REI +RD  RFH F GG+CSC D+W
Sbjct: 608 ISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 205/653 (31%), Positives = 319/653 (48%), Gaps = 106/653 (16%)

Query: 24  LVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFL 83
           L P  R+ R F   C  S           ++++  +IH+HL ++                
Sbjct: 47  LAPTPRVYRSFITACAQS----------KNLEDARKIHAHLGSSR--------------- 81

Query: 84  VFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKL 143
            F GD                    + ++N LI+ Y                   KC  +
Sbjct: 82  -FAGD--------------------AFLDNSLIHMY------------------CKCRSV 102

Query: 144 KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
            +   +FD++  +D++SW ++I+ Y    M  E +GLL  M      P+  T  SL+ A 
Sbjct: 103 LDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAA 162

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
               D   G+ +H    +        + + L+DMY +CGK+  A  +  +  +D  + V 
Sbjct: 163 GAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDK--LDSKNGVS 220

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
           W  L+SG+ +  + + A   F EM+     +     S +        + S A +GAL  G
Sbjct: 221 WNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSV--------FSSIARLGALEQG 272

Query: 324 IWVHVYIKKNQIS----IDNIEL-----------AYDLFSEISEKNVYLWTSVIAAYAMA 368
            WVH ++ K++      + N  L           A  +F  +  K++  W S++ A+A  
Sbjct: 273 KWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQY 332

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G  ++A+  F EM ++G   +Q+TF+ +L+ACSHGGLV EG  +  +  + Y+++P++ H
Sbjct: 333 GLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYF-EMMKEYDLEPEIDH 391

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           Y  +V LLGRAG L  +  FI  MP+ P  ++W +LL ACR H+N K+ + A  H+ E D
Sbjct: 392 YVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELD 451

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           P + G  VLL NIYA  G+ D  +R+RM ++  G+KK+   S +E    VH F + D  +
Sbjct: 452 PDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTH 511

Query: 549 PHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSE 592
           P +EEIY M  EI   ++++G                +E +LQ H E+LA+AF LI    
Sbjct: 512 PQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPA 571

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             TIRI+ N+RICGDCHS  K  S+V+ REIV+RD  RFH F  G CSC DYW
Sbjct: 572 GATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 138/320 (43%), Gaps = 28/320 (8%)

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           L  + A  ++P      S I+A  + ++LE  + +H  L  S       L N L+ MY K
Sbjct: 39  LDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCK 98

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           C  + +A+ +    ++   D+V WT+L++GY +++   EA  L   M++          +
Sbjct: 99  CRSVLDARNVFD--QMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFA 156

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVH------VYIKKNQISI----DNIELAYDLFSEI 350
            +L     +   + +  G   H + V       VY+    + +      +++A  +F ++
Sbjct: 157 SLLKAAGAY---ADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
             KN   W ++I+ +A  G  + A+  F EM   G +    T+ ++ S+ +  G +++G 
Sbjct: 214 DSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG- 272

Query: 411 DFLSKKSRVYNIKPKMQHYG----CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
               K    + IK + +        ++D+  ++G + ++      +    D+  W+S+L 
Sbjct: 273 ----KWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVD-NKDLVTWNSMLT 327

Query: 467 ACRCHQNVKLAEHAFKHLTE 486
           A        L + A  H  E
Sbjct: 328 A---FAQYGLGKEAVSHFEE 344


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 190/535 (35%), Positives = 288/535 (53%), Gaps = 30/535 (5%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG +     +FD + +R V+SWN+MI  Y   G     + +  KM  EGV P  VT
Sbjct: 175 MYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVT 234

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           ++  + A   L DLE GK +H  +++  +    S++N L+ MY KC ++  A  +     
Sbjct: 235 VMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFK--N 292

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +    +V W  ++ GY ++   +EA   F EM  RN+   +  +  ++   AE      A
Sbjct: 293 LRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQA 352

Query: 316 SIGALYHGIWVHVYIKKNQISI----------DNIELAYDLFSEISEKNVYLWTSVIAAY 365
                 HG+ +  ++ KN   +            I  A  LF  ++ ++V  W ++I  Y
Sbjct: 353 K---WIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGY 409

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
              G  + +++LF EM++   KP+ +TF+  LSACSH GLV+EG  F     + Y I+P 
Sbjct: 410 GTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPT 469

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
           M HYG MVDLLGRAG L ++ +FI  MPI P ++++ ++L AC+ H+NV L E A   + 
Sbjct: 470 MDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIF 529

Query: 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
           + +P + G HVLLANIYA A     ++++R  +   GL+K  G SL+E G  VH F SG 
Sbjct: 530 KLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGT 589

Query: 546 IFNPHSEEIYLMLNEIEMTLQQQGL-----------QETSLQ----HRERLAVAFGLIST 590
             +P S++IY  L  +   ++  G             +  +Q    H E+LA+AFGL++T
Sbjct: 590 TSHPQSKKIYSYLETLVDEIRAAGYVPDTNSIHDVEDDVKVQLLNTHSEKLAIAFGLLNT 649

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S  T I I  NLR+CGDCH+  K  S V  REI++RD  RFH F+ G CSC DYW
Sbjct: 650 STGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 158/316 (50%), Gaps = 29/316 (9%)

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
           GD  ++K    I  + + +G+   +FA    +     +  KC ++ +   +FD++P RD+
Sbjct: 41  GDNSDLKRGKEIHGSVITSGFSWNLFA----MTGVVNMYAKCRQINDAYNMFDRMPERDL 96

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           + WNTMIS Y   G  +  L L+ +M  EG  PD +T+VS++ A    R L +G  +H +
Sbjct: 97  VCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGY 156

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           +  +  +   ++   LVDMY KCG +  A+ +     +D   VV W +++ GYV+S + +
Sbjct: 157 VLRAGFESLVNVSTALVDMYSKCGSVSIARVIFD--GMDHRTVVSWNSMIDGYVQSGDAE 214

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID 338
            A  +F +M++  +    + + G L+        +CA +G L  G +VH  + + ++  D
Sbjct: 215 GAMLIFQKMLDEGVQPTNVTVMGALH--------ACADLGDLERGKFVHKLVDQLKLDSD 266

Query: 339 ---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                           +++A D+F  +  K +  W ++I  YA  G   +A++ F EM+ 
Sbjct: 267 VSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQS 326

Query: 384 TGTKPDQVTFIALLSA 399
              KPD  T ++++ A
Sbjct: 327 RNIKPDSFTMVSVIPA 342



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 109/261 (41%), Gaps = 25/261 (9%)

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           M+  Y         L   S+M  + V P       L+       DL+ GK +H  +  S 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
              +   +  +V+MY KC +I +A  +  R  + E D+V W T++SGY ++     A  L
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDR--MPERDLVCWNTMISGYAQNGFAKVALML 118

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG---------------IWVHV 328
              M E      ++ I  +L   A+ +      IG   HG                 V +
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAVADTRL---LRIGMAVHGYVLRAGFESLVNVSTALVDM 175

Query: 329 YIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
           Y K   +SI  +     +F  +  + V  W S+I  Y  +G A+ A+ +F +M + G +P
Sbjct: 176 YSKCGSVSIARV-----IFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQP 230

Query: 389 DQVTFIALLSACSHGGLVDEG 409
             VT +  L AC+  G ++ G
Sbjct: 231 TNVTVMGALHACADLGDLERG 251


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 286/562 (50%), Gaps = 64/562 (11%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            K GKLKE  +LF K+P  D +S+NTM+SCY               M  +  +P   TM+
Sbjct: 18  KKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKD-TPSWNTMI 76

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +  +     ++ +M K   LFL   T  +     N ++  Y +CG +  A KL  +    
Sbjct: 77  TGFA-----QNQQMDKARDLFLIMPTKNVV--TWNAMISGYVECGDLDSALKLFEKAPFK 129

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML-NQDAEFKYK---- 312
            V  V WT +++GY+K      A RLF++M E+NL++W  MI+G + N  AE   K    
Sbjct: 130 SV--VAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRT 187

Query: 313 ------------------SCASIGALYHGIWVHVYIKKNQISIDN--------------- 339
                              C+ + AL  G  VH  + K+ +  D                
Sbjct: 188 MVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGV 247

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           +E  + LF ++  ++V  W ++I+ YA  G  +KA+ LF EM E G KPD +TF+A+L A
Sbjct: 248 LEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMA 307

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           C+H G  D G  +    ++ Y +  K  HY CMVDLLGRAG L E+ + I  MP  P  +
Sbjct: 308 CNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAA 367

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           ++ +LL ACR H+N ++AE A + L   DP +   +V LAN+YA   R D ++R+R  ++
Sbjct: 368 VFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMK 427

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM-------------LNEIEMTLQ 566
              + K  GYS IE     H+F SGD F+P    I+               + ++E  L 
Sbjct: 428 SCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALH 487

Query: 567 QQGLQETS---LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
             G ++     L H E+LA+A+GLI     T IR+  NLR+CGDCH  +K  SQ+  REI
Sbjct: 488 DVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREI 547

Query: 624 VIRDNGRFHRFQGGQCSCRDYW 645
           ++RD  RFH F+ G CSC DYW
Sbjct: 548 IVRDTTRFHHFKDGHCSCADYW 569


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/492 (37%), Positives = 275/492 (55%), Gaps = 46/492 (9%)

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
           G   +VF +       T  L+  G +++  +LFD+ P RD++SWNT+I  Y   G   E 
Sbjct: 155 GLDSDVFVVN----AATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEA 210

Query: 178 LGLLSKMGAEG--VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           L L  +M AE   V PDEVTM++ +S   ++RDLE+G+ LH F++   +  +  L+N L+
Sbjct: 211 LELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALM 270

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           DMY KCG +  A+ +  R  I+   VV WTT++ G+ K    D+AR++FDEM ER++  W
Sbjct: 271 DMYIKCGSLEMAKSVFER--IEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPW 328

Query: 296 TLMISGMLN--------------QDAEFK---------YKSCASIGALYHGIWVHVYIKK 332
             +++G +               Q+A              +C+ +GAL  G+WVH YI+K
Sbjct: 329 NALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEK 388

Query: 333 NQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           +++                  NIE A  +F EI EKN   WT++I   A  GHA +AI+ 
Sbjct: 389 HRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEH 448

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F  M E G KPD++TFI +LSAC H GLV EG +F S     Y+++ KM+HY CM+DLLG
Sbjct: 449 FRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLG 508

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAGHL+E+   + +MP+ PD  +W ++  ACR   N+ L E A   L E DP + G +VL
Sbjct: 509 RAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVL 568

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           LAN+YA+A       ++R  +R +G++K  G S IE  G VH+F   D  +  S  IY  
Sbjct: 569 LANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHMDSHAIYDC 628

Query: 558 LNEIEMTLQQQG 569
           L+EI + ++   
Sbjct: 629 LHEITLQIKHTA 640


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 307/601 (51%), Gaps = 91/601 (15%)

Query: 136 LLNKCG-----KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
           LL+ C       L   C+LF   PN DV   NT+I         ++ L    +M     S
Sbjct: 43  LLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFS 102

Query: 191 P-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
           P D  +   ++ A   LR + +G  LH       +     +   L+ MY +CG +G A+K
Sbjct: 103 PPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARK 162

Query: 250 LL--------------------------GRYEIDEVDV---VLWTTLVSGYVKSNERDEA 280
           +                           GR   D + V   + W  +++GY K+ E + A
Sbjct: 163 VFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELA 222

Query: 281 RRLFDEMVERNLISWTLMISGMLNQ---DAEFKY--------------------KSCASI 317
           R +F EM  ++ +SW+ MI G  +    +  F +                     +CA  
Sbjct: 223 REMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQA 282

Query: 318 GALYHGIWVHVYIKKNQIS---------------IDNIELAYDLFSEI-SEKNVYLWTSV 361
           GAL  G  +H +I+K+ ++                 N+ +A  +F  I +E+N+  WTS+
Sbjct: 283 GALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSM 342

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           +AA AM GH ++AI +F +MEE+G +PD++ FI+LL ACSH GLV++G ++  K   +YN
Sbjct: 343 MAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYN 402

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I+P ++HYGCMVDL GRAG L+++  F+  MPIP    IW +LL AC  H +VKLAE   
Sbjct: 403 IEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVK 462

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           + L+E DP N   HVLL+N YA AG+  D + +R  + +  + K  G+S+IE    ++ F
Sbjct: 463 ERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTF 522

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVA 584
            +G      +EE Y  L EI   L+ +G                 +E S+  H E+LAVA
Sbjct: 523 LAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVA 582

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FG+    +  TIRIV NLRIC DCH+ MK+ SQ+Y  EIV+RD  RFH F+ G CSCRDY
Sbjct: 583 FGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDY 642

Query: 645 W 645
           W
Sbjct: 643 W 643


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 289/542 (53%), Gaps = 50/542 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +   +FD +P RDV+SW  +I+ Y    M  E LGLL  M      P   T  S
Sbjct: 109 KCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTS 168

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A        +G+ +H    +  +     + + L+DMY +C ++  A ++     +D 
Sbjct: 169 FLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFD--WLDS 226

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC---- 314
            + V W  L++G+ +  + +     F EM +RN    T            F Y S     
Sbjct: 227 KNEVSWNALIAGFARKGDGETTLMKFAEM-QRNGFGAT-----------HFTYSSVFSAL 274

Query: 315 ASIGALYHGIWVHVY-IKKNQ---ISIDNIEL-----------AYDLFSEISEKNVYLWT 359
           A IGAL  G WVH + IK  Q     + N  L           A  +F  + ++++  W 
Sbjct: 275 ARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWN 334

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           +++ A+A  G  ++A+  F E+ + G + +Q+TF+++L+ACSHGGLV EG  +     + 
Sbjct: 335 TMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMM-KD 393

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           YN++P++ HY   VDLLGRAG L+E+  F+  MP+ P  ++W +LL ACR H+N K+ ++
Sbjct: 394 YNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQY 453

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A  H+ E DP + G  VLL NIYA  G+ DD +R+R  ++  G+KK+   S +E    VH
Sbjct: 454 AADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVH 513

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAV 583
            F + D  +P SEEIY M  E+   +++ G                +ET LQ H E++A+
Sbjct: 514 MFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIAL 573

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AF LI+     TIRI+ N+RICGDCHS  +  S+V+ REIV+RD  RFH F  G CSC D
Sbjct: 574 AFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGD 633

Query: 644 YW 645
           YW
Sbjct: 634 YW 635



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 19/233 (8%)

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           ++P      S+I+A  + ++L   + +H  L  S +   G LLN L+ MY KCG + +A+
Sbjct: 58  LAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDAR 117

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
            +     I   DVV WT L++GY +++   EA  L  +M+           +  L     
Sbjct: 118 HVFD--GIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAG- 174

Query: 309 FKYKSCA--SIGALYHGIWVH------VYIKKNQISI----DNIELAYDLFSEISEKNVY 356
               +C    IG   H + V       VY+    + +      +++A  +F  +  KN  
Sbjct: 175 ----ACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEV 230

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
            W ++IA +A  G  +  +  F EM+  G      T+ ++ SA +  G +++G
Sbjct: 231 SWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQG 283


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/593 (31%), Positives = 325/593 (54%), Gaps = 33/593 (5%)

Query: 84  VFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV---------TRT 134
           +FT  +   + ++R G  P+   +  I+++      P     ++ +++           T
Sbjct: 30  LFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLT 89

Query: 135 VLLN---KCGKLKEVCQLFDKLPNRDV--ISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
            L++   KCG +++  ++F++ P+     + +N +IS YT+     +   +  +M   GV
Sbjct: 90  ALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGV 149

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
           S D VT++ L+   T    L +G++LH    +       ++LN  + MY KCG +   ++
Sbjct: 150 SVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRR 209

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           L    E+    ++ W  ++SGY ++    +   LF++M    +      +  +L+  A  
Sbjct: 210 LFD--EMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHL 267

Query: 310 KYKSCAS-IGALY--HGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVI 362
             K     +G L   +G   +V++    IS+     N+  A  +F  +  K++  WT++I
Sbjct: 268 GAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMI 327

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             Y M G  +  + LF +M + G +PD   F+ +LSACSH GL D+G +      R Y +
Sbjct: 328 GCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKL 387

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +P  +HY C+VDLLGRAG L+E+  FI SMP+ PD ++W +LL AC+ H+NV +AE AF 
Sbjct: 388 EPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFA 447

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            + E +P+N G +VL++NIY+ +   + + RIR+ +R+   +K+ GYS +E  G VH F 
Sbjct: 448 KVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFL 507

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQ----------QGLQETSLQHRERLAVAFGLISTSE 592
           +GD  +  +EE++ ML+E+E ++ +          + +  T+ +H ERLA+AFG++++  
Sbjct: 508 AGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIP 567

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            T I ++ NLR+C DCH F+K+ S++ +R  V+RD  RFH F+ G CSC+DYW
Sbjct: 568 GTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 144/343 (41%), Gaps = 11/343 (3%)

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SWN  +       ++ E + L   M   G SPD  +   ++ +   L     G+ LH  +
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
                +    +L  L+ MY KCG + +A+K+           V +  L+SGY  +++  +
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKY--------KSCASIGALYHGIWVHVYIK 331
           A  +F  M E  +   ++ I G++      +Y          C   G  Y  + V     
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVK-GGTYSEVAVLNSFI 195

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
              +   ++E    LF E+  K +  W +VI+ Y+  G A   ++LF +M+ +G  PD  
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPF 255

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           T +++LS+C+H G    G + + +        P +     ++ +  R G+L ++      
Sbjct: 256 TLVSVLSSCAHLGAKKIGQE-VGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDI 314

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
           MP+   VS W++++     H   +     F  + +     DGA
Sbjct: 315 MPVKSLVS-WTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGA 356


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 209/687 (30%), Positives = 330/687 (48%), Gaps = 80/687 (11%)

Query: 37  VCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P       V ++CS++ +      IH+H     L  D  +ST + +  +     G A 
Sbjct: 95  VPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAA 154

Query: 94  QIIRQGDEPEIKIWNSII-----------------------------------------E 112
            +  +    ++  WN+++                                          
Sbjct: 155 NVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQH 214

Query: 113 NQLINGYPQEVFAIYLYL-------VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWN 162
             L  G     + +  YL       +  T LL+   KC  L   C++F  +  R+ ++W+
Sbjct: 215 GALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWS 274

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV-SLISARTKLRDLEMGKNLHLFLEE 221
            +I  +       E   L   M  EG+     T V S +     L DL MG  LH  L +
Sbjct: 275 ALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAK 334

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           S +    +  N L+ MY K G I EA  L    EI   D + +  L+SGYV++ + +EA 
Sbjct: 335 SGIHADLTAGNSLLSMYAKAGLINEATMLFD--EIAIKDTISYGALLSGYVQNGKAEEAF 392

Query: 282 RLFDEMVERNL---ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI- 337
            +F +M   N+   I+  + +    +  A  ++  C+    +  G+ +   I  + I + 
Sbjct: 393 LVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMY 452

Query: 338 ---DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                I+L+  +F ++  +++  W ++IA Y + G  ++A  LFL M+  G +PD VTFI
Sbjct: 453 AKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFI 512

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            L++ACSH GLV EG  +    +  Y I P+M+HY CMVDLL R G L+E+  FI SMP+
Sbjct: 513 CLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPL 572

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
             DV +W +LL ACR H+N+ L +   + + +  P   G  VLL+NI++ AGR D+ + +
Sbjct: 573 KADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEV 632

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS 574
           R+  +  G KK  G S IE  G +H F  GD  +P S +IY  L+ I + +++ G Q  +
Sbjct: 633 RIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADT 692

Query: 575 ----------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                           L H E+LA+AFG++S +E  TI +  NLR+CGDCH+ +K  + V
Sbjct: 693 SFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLV 752

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NR I++RD  RFH F+ GQCSC D+W
Sbjct: 753 RNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 99/457 (21%), Positives = 176/457 (38%), Gaps = 106/457 (23%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L    Q+FD++P  D  ++N +I  Y+  G +   + L   M    V P++ T   ++
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A + L DL  G+ +H       +     +   L+D+Y +C + G A  +  +  +   D
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR--D 164

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLI----SWTLMISGMLNQDAEFKYKSCAS 316
           VV W  +++GY        A     +M +R  +    S  + +  +L Q           
Sbjct: 165 VVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQH---------- 214

Query: 317 IGALYHGIWVHVYI-------KKNQISIDNIEL-----------AYDLFSEISEKNVYLW 358
            GAL+ G  VH Y         + Q+ I    L           A  +F  ++ +N   W
Sbjct: 215 -GALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTW 273

Query: 359 TSVIAAYAMAGHAQKAIDLFLEM------------------------------------E 382
           +++I  + +     +A +LF +M                                     
Sbjct: 274 SALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLA 333

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
           ++G   D     +LLS  +  GL++E    +D ++ K  +         YG ++    + 
Sbjct: 334 KSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTI--------SYGALLSGYVQN 385

Query: 440 GHLEESANFITSMP---IPPDVSIWSSLLRAC---------RC-HQNVKLAEHAFKHLTE 486
           G  EE+      M    + PD++   SL+ AC         RC H +V +   A     E
Sbjct: 386 GKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLAL----E 441

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRI--RMKLRDM 521
           T   N      L ++YAK GR+D   ++  +M  RD+
Sbjct: 442 TSICNS-----LIDMYAKCGRIDLSRQVFDKMPARDI 473



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
           +  I+   + LA  +F  I   +   + ++I AY+  G    AIDL+  M      P++ 
Sbjct: 41  EQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKY 100

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           TF  +L ACS    +  G    +  + V  +   +     ++DL  R      +AN    
Sbjct: 101 TFPFVLKACSALADLCAGRTIHAHAAAV-GLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           MP+  DV  W+++L     + N  +  HA  HL +
Sbjct: 160 MPM-RDVVAWNAMLAG---YANHGMYHHAIAHLLD 190


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 193/542 (35%), Positives = 291/542 (53%), Gaps = 43/542 (7%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            K G L+E   +F  +  RD+++WN++IS     G     L +   M   GVSPD +T+V
Sbjct: 215 GKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLV 274

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEI 256
           SL SA  +  D    K+LH ++      +   +  N +VDMY K   I  AQ++     +
Sbjct: 275 SLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPV 334

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
              D V W TL++GY+++   +EA   +  M +   +     I G           + + 
Sbjct: 335 Q--DSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLK---AIQGTFVS----VLPAYSH 385

Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
           +GAL  G+ +H    K  +++D                +  A  LF ++  ++   W ++
Sbjct: 386 LGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAI 445

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I+   + GH  +A+ LF  M++ G KPD VTF++LL+ACSH GLVD+G  F       Y+
Sbjct: 446 ISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYD 505

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I P  +HY CM D+LGRAG L+E+ NFI +MPI PD ++W +LL ACR H NV++ + A 
Sbjct: 506 IVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVAS 565

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           ++L E DP N G +VL++N+YAK G+ D +  +R  +R   L+K  G+S IE    V+ F
Sbjct: 566 QNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVF 625

Query: 542 TSGDIFNPHS--EEIYLMLNEIEMTLQQQG--------LQETS--------LQHRERLAV 583
            SG+   PH   EEI   L  +   ++  G        LQ+            H ERLA+
Sbjct: 626 YSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAI 685

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFG+I+T  +T + I  NLR+CGDCH+  K  SQ+  REI++RD+ RFH F+ G CSC D
Sbjct: 686 AFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGD 745

Query: 644 YW 645
           +W
Sbjct: 746 FW 747


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 210/638 (32%), Positives = 325/638 (50%), Gaps = 59/638 (9%)

Query: 48  ERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIW 107
           +R C ++  F+R+         +RD      + +  +  G+LG A ++  +  E  +  W
Sbjct: 57  DRLCDALKLFDRMS--------VRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISW 108

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKC--------GKLKEVCQLFDKLPNRDVI 159
            +++   L  G  +    ++L +  + V             G+++E  +LF+++P RDVI
Sbjct: 109 TTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVI 168

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SW +MI      G   E L +  KM   GV P   T   ++SA     +  +G  +H  +
Sbjct: 169 SWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHV 228

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
            +        +   L+  Y  C KI  A K+    E    +VV WT L++ YV +N+  +
Sbjct: 229 VKLGCFFHEFISVSLITFYANCMKIEHAHKIFN--ETLTKNVVKWTALLTAYVWNNKHQD 286

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDA-EFKYKSCASIGALYHGIWVHVYIKKNQISID 338
           A R+F +M +         +  + NQ       K+C  + AL  G  +H    K  +  D
Sbjct: 287 ALRVFGDMTK---------MGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETD 337

Query: 339 ---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                          N+  A  +F  I+EK++  W S+I   A  G    A+  F +M  
Sbjct: 338 VFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIR 397

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            G  P+++TF  LLSACS  G++ +G  F    SR  +   + QHY CMVD+LGR G L+
Sbjct: 398 RGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLD 457

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           E+   +  MP+  +  IW +LL ACR H N+++AE A KH+ + +P    A+VLL+NIYA
Sbjct: 458 EAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYA 517

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
            AGR  D+SR+R+K++  GL KQ G S +   G  H+F S D  +P SE IY  L+ +  
Sbjct: 518 SAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGK 577

Query: 564 TLQQQGL---QETSLQ-------------HRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
            L++ G    Q+ +L              H ERLA+AFGL+ST E +TI ++ NLR+CGD
Sbjct: 578 KLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGD 637

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CHS +K+ S++  R+IV+RD+GRFH F+ G CSC DYW
Sbjct: 638 CHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 149/325 (45%), Gaps = 57/325 (17%)

Query: 132 TRTVLLN---------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
           TRT+ L+         K  +L +   +FDK+P+ ++  +  MI+ YT      + L L  
Sbjct: 8   TRTITLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFD 67

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           +M       D V+  S+I       +L M   L   + E  + IS +    +V+ Y K G
Sbjct: 68  RMSVR----DVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNV-ISWTT---MVNGYLKFG 119

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
           ++  AQ+L    ++   DV  W  +V GY ++   +E  RLF+EM  R++ISWT MI G+
Sbjct: 120 RVELAQRLF--LDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGL 177

Query: 303 -LN---QDAEFKYK-------------------SCASIGALYHGIWVHVYIKK------N 333
            LN   ++A F +K                   +CA+      G+ VH ++ K       
Sbjct: 178 DLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHE 237

Query: 334 QISID---------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
            IS+           IE A+ +F+E   KNV  WT+++ AY      Q A+ +F +M + 
Sbjct: 238 FISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKM 297

Query: 385 GTKPDQVTFIALLSACSHGGLVDEG 409
           G  P+Q TF   L AC     +D+G
Sbjct: 298 GALPNQSTFSITLKACCGLEALDKG 322


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 200/604 (33%), Positives = 334/604 (55%), Gaps = 51/604 (8%)

Query: 74  QISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE--NQLINGYPQEVFAIYLYLV 131
           QI  Q+F+F       GY   +       ++      I   N++    P++   +Y  ++
Sbjct: 159 QIHGQIFKF-------GYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMI 211

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           T    L +C  + E  QLFD +P +D ISW T+I+  T  G+++E +    +MG EG   
Sbjct: 212 TG---LLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCM 268

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D+ T  S+++A      L+ GK +H ++  +  + +  + + L+DMY KC  +  A+ + 
Sbjct: 269 DQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVF 328

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI---SWTL--MISGMLN-- 304
            +  +   +V+ WT ++ GY ++   +EA R+F +M +RN I    +TL  +IS   N  
Sbjct: 329 RK--MRHKNVISWTAMLVGYGQNGYSEEAVRIFCDM-QRNEIHPDDFTLGSVISSCANLA 385

Query: 305 ---QDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYL 357
              + A+F  ++ AS      G+   V +    I++     ++E A+ LF E+  ++   
Sbjct: 386 SLEEGAQFHGQALAS------GLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS 439

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           WT++++ YA  G A + I LF  M   G  PD VTF+ +LSACS  GLV++GY +     
Sbjct: 440 WTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMV 499

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
           + + I P   HY CM+DLL RAG LEE+ NFI  MP  PD   W++LL +CR + N+++ 
Sbjct: 500 KEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIG 559

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           + A + L + +P N  +++LL++IYA  G+ DD++++R  +R+MG+KK+ G+S I+    
Sbjct: 560 KWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNK 619

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERL 581
           VH F++ D  +P S++IY  L  + + + ++G + + S                 H E+L
Sbjct: 620 VHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKL 679

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AFGL+   +   IR+V NLR+CGDCH+  K  S++  REI++RD  RFH F+ G CSC
Sbjct: 680 AIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSC 739

Query: 642 RDYW 645
            D+W
Sbjct: 740 GDFW 743



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 228/479 (47%), Gaps = 86/479 (17%)

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEFLVFT----GDLGYAQQIIRQGDEPEIKIWNSII 111
           + +++H  +I T  + +P+  T ++  L+ T    GDL  A+ +     +P +  WN+  
Sbjct: 23  QVKKLHCRIIRT--LTNPE--TFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNT-- 76

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
              L++ Y                  +K G L+++ ++FD +PN DV+SWN+++S Y   
Sbjct: 77  ---LLSAY------------------SKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGN 115

Query: 172 GMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLH----LFLEESTMKI 226
           G+  E + + + M  +G V+ + +T  +++   +    +++G+ +H     F  +S + +
Sbjct: 116 GLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFV 175

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
                  LVDMY K G I +A ++    EI E ++V++ T+++G ++     EA +LFD 
Sbjct: 176 GSP----LVDMYAKTGFINDANRIFE--EIPEKNIVVYNTMITGLLRCRFIVEAEQLFDN 229

Query: 287 MVERNLISWTLMISGM----LNQDAEFKYK-------------------SCASIGALYHG 323
           M E++ ISWT +I+G+    L ++A  K+K                   +C    AL  G
Sbjct: 230 MPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEG 289

Query: 324 IWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
             +H YI +     +               N++ A  +F ++  KNV  WT+++  Y   
Sbjct: 290 KQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQN 349

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G++++A+ +F +M+     PD  T  +++S+C++   ++EG  F   ++    +   +  
Sbjct: 350 GYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQF-HGQALASGLICFVTV 408

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA----CRCHQNVKLAEHAFKH 483
              ++ L G+ G LE +      M I  +VS W++L+       + ++ + L E    H
Sbjct: 409 SNALITLYGKCGSLEHAHQLFHEMKIRDEVS-WTALVSGYAQFGKANETISLFETMLAH 466


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 301/556 (54%), Gaps = 52/556 (9%)

Query: 128 LYLVTRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +YL TR ++   KC  L++   +FD +P R+V+SW  MIS Y+  G   + L L  +M  
Sbjct: 93  VYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLR 152

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G  P+E T  +++++        +G+ +H  + +   +    + + L+DMY K GKI E
Sbjct: 153 SGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHE 212

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMISGM 302
           A+ +     + E DVV  T ++SGY +    +EA    RRL  E ++ N +++T +++ +
Sbjct: 213 ARGIF--QCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTAL 270

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLF 347
                       + + AL HG  VH ++ ++++          ID      N+  A  +F
Sbjct: 271 ------------SGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIF 318

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLF-LEMEETGTKPDQVTFIALLSACSHGGLV 406
             + E+ V  W +++  Y+  G  ++ ++LF L ++E   KPD VT +A+LS CSHGGL 
Sbjct: 319 DTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLE 378

Query: 407 DEGYD-FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           D+G D F    S   +++P  +HYGC+VD+LGRAG +E +  F+  MP  P  +IW  LL
Sbjct: 379 DKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLL 438

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            AC  H N+ + E     L + +P N G +V+L+N+YA AGR +D+  +R  +    + K
Sbjct: 439 GACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTK 498

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
           + G S IE    +H F + D  +P  EE+   + E+    ++ G                
Sbjct: 499 EPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQ 558

Query: 571 -QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
            ++  L H E+LA+ FGLI+T E   IR++ NLRIC DCH+F K TS++Y RE+ +RD  
Sbjct: 559 KEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKN 618

Query: 630 RFHRFQGGQCSCRDYW 645
           RFHR  GG+CSC DYW
Sbjct: 619 RFHRIVGGKCSCGDYW 634



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 125/288 (43%), Gaps = 49/288 (17%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           +I E +R+H+H+I T+ +    + T++  F V    L  A+ +     E  +  W ++I 
Sbjct: 73  AIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMIS 132

Query: 113 NQLINGYPQEVFAIYLYLV---------TRTVLLNKC----------------------- 140
                GY  +  ++++ ++         T   +L  C                       
Sbjct: 133 AYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEA 192

Query: 141 ---------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
                          GK+ E   +F  LP RDV+S   +IS Y  +G+  E L L  ++ 
Sbjct: 193 HVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQ 252

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            EG+  + VT  S+++A + L  L+ GK +H  L  S +     L N L+DMY KCG + 
Sbjct: 253 REGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLT 312

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
            A+++     + E  V+ W  ++ GY K  E  E   LF+ M++ N +
Sbjct: 313 YARRIFD--TLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKV 358


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/550 (34%), Positives = 302/550 (54%), Gaps = 48/550 (8%)

Query: 134 TVLLNKC------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           T L+N C        +    ++FDK+P  D++ +NTM   Y         + L S++   
Sbjct: 70  TKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCS 129

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G+ PD+ T  SL+ A  +L+ LE GK LH    +  +  +  +   L++MY  C  +  A
Sbjct: 130 GLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAA 189

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           +++  +  I E  VV +  +++   +++  +EA  LF E+ E  L    + +   L+   
Sbjct: 190 RRVFDK--IGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALS--- 244

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISE 352
                SCA +GAL  G W+H Y+KKN            ID      +++ A  +F ++  
Sbjct: 245 -----SCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPR 299

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           ++   W+++I AYA  GH  +AI +  EM++   +PD++TF+ +L ACSH GLV+EGY++
Sbjct: 300 RDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEY 359

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
               +  Y I P ++HYGCM+DLLGRAG LEE+  FI  +PI P   +W +LL +C  H 
Sbjct: 360 FHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHG 419

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           NV++A+   + + E D  + G +V+L+N+ A+ GR DD++ +R  + D G  K  G S I
Sbjct: 420 NVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSI 479

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------- 575
           E    VH+F SGD  +  S  ++  L+E+   L+  G + +TSL                
Sbjct: 480 EVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLR 539

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LA+ +GL++T   TTIR+V NLR+C DCH+  K  S ++ R+I++RD  RFH F+
Sbjct: 540 YHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFK 599

Query: 636 GGQCSCRDYW 645
            G+CSC DYW
Sbjct: 600 DGKCSCGDYW 609


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/571 (33%), Positives = 305/571 (53%), Gaps = 32/571 (5%)

Query: 102 PEIKIWNSIIENQLINGYPQEV-FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVI 159
           P +    S+   + I+GY     F  ++ + T  V + +KCG +     +FD++  + V+
Sbjct: 284 PAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVV 343

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SWN+MI  Y   G     + +  KM  E V    VT++  + A   L D+E G+ +H  L
Sbjct: 344 SWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLL 403

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
           ++  +    S++N L+ MY KC ++  A ++     +    +V W  ++ GY ++   +E
Sbjct: 404 DQLELGSDVSVMNSLISMYSKCKRVDIAAEIF--ENLQHKTLVSWNAMILGYAQNGRINE 461

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI---- 335
           A   F +M  +N+   +  +  ++   AE    S        HG+ +   + KN      
Sbjct: 462 AIDYFCKMQLQNIKPDSFTMVSVIPALAEL---SVLPQAKWIHGLVIRTCLDKNVFVATA 518

Query: 336 ------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                     +  A  LF  + E++V  W ++I  Y   G  + A++LF +M++   KP+
Sbjct: 519 LVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPN 578

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
           +VTF+ +LSACSH GLV+EG+ +     + Y ++P M HYG MVDLLGRA  L E+ +FI
Sbjct: 579 EVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFI 638

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             MPI P +S++ ++L ACR H+NV+L E A   + + DP + G HVLLANIYA A   D
Sbjct: 639 QKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWD 698

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
            ++R+R  +   G++K  G+S++E    VH F SG   +P +++IY  L  +   ++  G
Sbjct: 699 KVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAG 758

Query: 570 --------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                         ++E  L  H E+LA+AF L++TS  TTI +  NLR+CGDCH+  K 
Sbjct: 759 YMPDTNSVHDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKY 818

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S V  REI++RD  RFH F+ G CSC DYW
Sbjct: 819 ISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 160/316 (50%), Gaps = 29/316 (9%)

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
           GD  +++    I    ++NG+   VFA    +     +  KC  ++E  ++FD++P RD+
Sbjct: 186 GDNADLRKGKEIHCQLIVNGFASNVFA----MTGVVNMYAKCRLVEEAYKMFDRMPERDL 241

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           + WNT+IS Y   G  +  L L+ +M  EG  PD +T+VS++ A   +  L +G+++H +
Sbjct: 242 VCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGY 301

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
              +  +   ++   LVDMY KCG +G A+ +  R  +    VV W +++ GYV++ +  
Sbjct: 302 SMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDR--MTGKTVVSWNSMIDGYVQNGDPG 359

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID 338
            A  +F +M++  +    + + G L+        +CA +G +  G +VH  + + ++  D
Sbjct: 360 AAMEIFQKMMDEQVEMTNVTVMGALH--------ACADLGDVEQGRFVHKLLDQLELGSD 411

Query: 339 ---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                           +++A ++F  +  K +  W ++I  YA  G   +AID F +M+ 
Sbjct: 412 VSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQL 471

Query: 384 TGTKPDQVTFIALLSA 399
              KPD  T ++++ A
Sbjct: 472 QNIKPDSFTMVSVIPA 487



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 131/302 (43%), Gaps = 25/302 (8%)

Query: 123 VFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
           +++ +L+      L  K G L E  ++F  + ++    ++TM+  Y       + +    
Sbjct: 105 LYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFC 164

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           +M  +GV P       L+       DL  GK +H  L  +    +   +  +V+MY KC 
Sbjct: 165 RMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCR 224

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
            + EA K+  R  + E D+V W T++SGY ++     A  L   M E      ++ I  +
Sbjct: 225 LVEEAYKMFDR--MPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSI 282

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVY-IKKNQISIDNIELA-YDLFSE----------- 349
           L         + A +G+L  G  +H Y ++    S  N+  A  D++S+           
Sbjct: 283 L--------PAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIF 334

Query: 350 --ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             ++ K V  W S+I  Y   G    A+++F +M +   +   VT +  L AC+  G V+
Sbjct: 335 DRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVE 394

Query: 408 EG 409
           +G
Sbjct: 395 QG 396



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 118/244 (48%), Gaps = 21/244 (8%)

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VE 289
           LV ++ K G + EA ++    E D++D  L+ T++ GY +++  D+A   F  M    V 
Sbjct: 115 LVSLFCKFGSLHEAARVFQPIE-DKIDE-LYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 290 RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN----IELAYD 345
             + ++T ++  +   +A+ +         + +G   +V+     +++      +E AY 
Sbjct: 173 PVVYNFTYLLK-VCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYK 231

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  + E+++  W ++I+ YA  G  + A++L L M+E G +PD +T +++L A     +
Sbjct: 232 MFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPA-----V 286

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
            D G   + +    Y+++   + +      +VD+  + G +  +A  I        V  W
Sbjct: 287 ADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSV-GTARLIFDRMTGKTVVSW 345

Query: 462 SSLL 465
           +S++
Sbjct: 346 NSMI 349


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/574 (34%), Positives = 321/574 (55%), Gaps = 56/574 (9%)

Query: 111 IENQLI-NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           I  QLI NG+ Q+ F ++  L +     +KC  +    ++F    N +V  +  +I  + 
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRS----CSKCHAIDYASRIFQYTHNPNVYLYTALIDGFV 113

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
           S G Y E + L S+M  E + PD   M S++ A      L  G+ +H       +K+ G 
Sbjct: 114 SSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVH----SRALKL-GF 168

Query: 230 LLNYLV-----DMYFKCGKIGEAQKLLGRYEIDEV--DVVLWTTLVSGYVKSNERDEARR 282
             N LV     ++Y KCG++G+A+++      D V  D V WT ++ G+V++ E + A  
Sbjct: 169 SSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALE 228

Query: 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---- 338
            F  M   N+      I  +L+        +C+ +GAL  G WVH Y++K +I ++    
Sbjct: 229 AFRGMQGENVRPNEFTIVCVLS--------ACSQLGALEIGRWVHSYMRKFEIELNLFVG 280

Query: 339 -----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
                      +I+ A  +F E+ +++V  + ++I+  +M G +++AI+LF  M     +
Sbjct: 281 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLR 340

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           P  VTF+ +L+ACSHGGLVD G++     +R Y ++P+++HYGCMVDLLGR G LEE+ +
Sbjct: 341 PTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYD 400

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
            I +M + PD  +  +LL AC+ H+N++L E   K L +    + G +VLL+++YA +G+
Sbjct: 401 LIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGK 460

Query: 508 LDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN-------- 559
             + +++R K+++ G++K+ G S IE    +H+F  GD+ +P  E IY  L         
Sbjct: 461 WKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRL 520

Query: 560 -----EIEMTLQ--QQGLQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
                E E+ LQ  + G +E +L  H ERLA+ +GLIST   T IR++ NLR+C DCHS 
Sbjct: 521 EGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSA 580

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +K+ +++  R+IV+RD  RFH F+ G CSC DYW
Sbjct: 581 IKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/540 (34%), Positives = 286/540 (52%), Gaps = 66/540 (12%)

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           M++ Y S G     + + + +G      D  T   ++ +  +L  + MGK +H  +    
Sbjct: 111 MVAFYASSGDIDSSVSVFNGIG------DYFTFPFVLKSSVELLSVWMGKCVHGLILRIG 164

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           ++    +   L+ +Y KCG+I +A K+     I   DV  W  L++GY KS   D A  +
Sbjct: 165 LQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR--DVSSWNALLAGYTKSGCIDAALAI 222

Query: 284 FDEMVERNLISWTLMISG----------------MLNQDAEFK---------YKSCASIG 318
           F+ M  RN++SWT MISG                M+ +D+  +           +CA + 
Sbjct: 223 FERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLS 282

Query: 319 ALYHGIWVH---------------VYIKKNQISIDNIELAYDLFSEIS--EKNVYLWTSV 361
            L  G  +H               + +        ++  A + F +++  EKN+  W ++
Sbjct: 283 TLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTM 342

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I AYA  GH  +A+  F EM + G +PD +TF  LLS CSH GLVD G  + +  S  Y+
Sbjct: 343 ITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYS 402

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I P+++HY C+ DLLGRAG L E++  +  MP+P   SIW SLL ACR H+N+++AE A 
Sbjct: 403 INPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAA 462

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           + L   +P N G +VLL+N+YA+AGR  ++ ++R  ++  G KK  G S IE  G  H F
Sbjct: 463 RKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMF 522

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAF 585
             GD  +P  +EIY+ L  +   ++  G   +TS               + H E+LAVAF
Sbjct: 523 LGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAF 582

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           G+++T  +T +R+  NLRICGDCH+ M   S++Y RE+++RD  RFH F+GG CSC DYW
Sbjct: 583 GILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 29/248 (11%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H  ++   L  D  ++T +       G++  A ++       ++  WN+     L+ GY
Sbjct: 156 VHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNA-----LLAGY 210

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                              K G +     +F+++P R+++SW TMIS Y+  G+ ++ L 
Sbjct: 211 ------------------TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252

Query: 180 LLSKMGAE--GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
           L  +M  E  GV P+ VT++S++ A  +L  LE G+ +H       +  + S+L  L  M
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAM 312

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL----I 293
           Y KCG + +A+    +   +E +++ W T+++ Y       +A   F EM++  +    I
Sbjct: 313 YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDI 372

Query: 294 SWTLMISG 301
           ++T ++SG
Sbjct: 373 TFTGLLSG 380


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 314/551 (56%), Gaps = 48/551 (8%)

Query: 132 TRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE- 187
           TR+ L+N   KC       ++FD++PN   I +N MIS Y+        + L  KM  E 
Sbjct: 91  TRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNSKPLHAVCLFRKMRREE 149

Query: 188 ------GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
                  V+ + VT++SL+S  +    L +G  LH            ++ N LV MY KC
Sbjct: 150 EDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKC 209

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           G++  A+K+    E+   D++ W  ++SGY ++        ++ EM    + +  + + G
Sbjct: 210 GEVELARKVFD--EMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLG 267

Query: 302 MLNQDAEFKYKSCASIGA-----------LYHGIWVHVYIKKNQISI----DNIELAYDL 346
           +++        +CA++GA              G   + +++   +++     N+  A ++
Sbjct: 268 VMS--------ACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREV 319

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F    EK+V  WT++I  Y + GH + A++LF EM E+  +PD+  F+++LSACSH GL 
Sbjct: 320 FDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLT 379

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           D G ++  +  R Y ++P  +HY C+VDLLGRAG LEE+ N I SM + PD ++W +LL 
Sbjct: 380 DRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLG 439

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           AC+ H+N ++AE AF+H+ E +P N G +VLL+NIY  A  L+ +SR+R+ +R+  L+K 
Sbjct: 440 ACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKD 499

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ--------QGLQETSL--- 575
            GYS +E  G ++ F SGD+ +P +++IY ML+E+E  +++        QG  E  L   
Sbjct: 500 PGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVKEVHPPNEKCQGRSEELLIGT 559

Query: 576 -QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
             H E+LA+AF L++T   T I ++ NLR+C DCH F+K+ S++ NR+ ++RD  RFH F
Sbjct: 560 GVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVRDATRFHHF 619

Query: 635 QGGQCSCRDYW 645
           + G CSC+DYW
Sbjct: 620 RDGICSCKDYW 630



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 112/268 (41%), Gaps = 35/268 (13%)

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           +WN  +   +    YRE L L   M      P+  T   L+ +   L        LH  +
Sbjct: 21  AWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHV 80

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV--DVVLWTTLVSGYVKSNER 277
             +  +      + L++ Y KC     A+K+      DE+    + +  ++SGY  +++ 
Sbjct: 81  IRTGSQPDPYTRSSLINTYAKCSLHHHARKVF-----DEMPNPTICYNAMISGYSFNSKP 135

Query: 278 DEARRLFDEM-----------VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
             A  LF +M           V  N ++   ++SG           +  +IG   HG  V
Sbjct: 136 LHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGC-------SVATHLTIGVCLHGCCV 188

Query: 327 HVYIKKN----------QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
                 +           +    +ELA  +F E+  +++  W ++I+ YA  GHA+  ++
Sbjct: 189 RFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLE 248

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGG 404
           ++ EM+ +G   D VT + ++SAC++ G
Sbjct: 249 VYSEMKLSGVSADAVTLLGVMSACANLG 276


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/585 (34%), Positives = 311/585 (53%), Gaps = 55/585 (9%)

Query: 114 QLINGYPQ-EVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
           ++I+ Y Q + F + + L T  + +  KCG ++   ++FD++  ++VISW+ MI+ Y   
Sbjct: 279 RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 338

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G  R+ L L   M + G+ PD++T+ SL+ A    R+L   + +H       M  +  + 
Sbjct: 339 GQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVA 398

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE-- 289
           N LV  Y     + +A  L     +   D V W+ +V G+ K  +       F E++   
Sbjct: 399 NKLVHFYSYYRALDDAYGLFDGMCVR--DSVSWSVMVGGFAKVGDYMNCFGTFRELIRCG 456

Query: 290 RNLISWTLMISGMLNQDAEFKYK------------------SCASIGALYHGIWVHVYIK 331
               ++TL   G  N+      K                  +CA +GA++    +  YI+
Sbjct: 457 ARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 516

Query: 332 KNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           + +  +D I               E A ++F  + EKNV  W+++IAAY   G  +KA+D
Sbjct: 517 RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 576

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF  M  +G  P+++T ++LL ACSH GLV+EG  F S     Y+++  ++HY C+VDLL
Sbjct: 577 LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLL 636

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG L+E+   I SM +  D  +W + L ACR H++V LAE A   L E  P N G ++
Sbjct: 637 GRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYI 696

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+NIYA AGR +D+++ R  +    LKK  G++ IE     H+F+ GD  +P S+EIY 
Sbjct: 697 LLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYE 756

Query: 557 MLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTSEKTTIRIVN 600
           ML  +   L+  G + +T+                 H E+LA+AFGLI+T E T IRI+ 
Sbjct: 757 MLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIK 816

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+CGDCH+F K+ S +  R I++RD  RFH F+ G CSC DYW
Sbjct: 817 NLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 133/273 (48%), Gaps = 46/273 (16%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L +   LFD +  RD +SW+ M+  +  +G Y    G   ++   G  PD  T+  +I A
Sbjct: 129 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 188

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
              L++L+M                      LVDMY KC +I +A+ L  +  + E D+V
Sbjct: 189 CRDLKNLQMA---------------------LVDMYVKCREIEDARFLFDK--MQERDLV 225

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            WT ++ GY +  + +E+  LF++M E  ++   + +  ++         +CA +GA++ 
Sbjct: 226 TWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF--------ACAKLGAMHK 277

Query: 323 GIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAM 367
              +  YI++ +  +D I               E A ++F  + EKNV  W+++IAAY  
Sbjct: 278 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 337

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
            G  +KA+DLF  M  +G  PD++T  +LL AC
Sbjct: 338 HGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 164/367 (44%), Gaps = 45/367 (12%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC ++++   LFDK+  RD+++W  MI  Y   G   E L L  KM  EGV PD+V MV+
Sbjct: 205 KCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVT 264

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  KL  +   + +  +++    ++   L   ++DMY KCG +  A+++  R E  E
Sbjct: 265 VVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME--E 322

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML-------NQDAEFKY 311
            +V+ W+ +++ Y    +  +A  LF  M+   ++   + ++ +L       N     + 
Sbjct: 323 KNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQV 382

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA----- 366
            + AS+  +   + V   +         ++ AY LF  +  ++   W+ ++  +A     
Sbjct: 383 HAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDY 442

Query: 367 -----------------------MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
                                    G+A +++ LF +M E G  PD+V  + ++ AC+  
Sbjct: 443 MNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKL 502

Query: 404 GLVDEGY---DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           G + +     D++ +K    ++         M+D+  + G +E +      M    +V  
Sbjct: 503 GAMHKARTIDDYIQRKKFQLDVILGTA----MIDMHAKCGCVESAREIFDRME-EKNVIS 557

Query: 461 WSSLLRA 467
           WS+++ A
Sbjct: 558 WSAMIAA 564



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 124/282 (43%), Gaps = 39/282 (13%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML---------------- 303
           ++V+   L+  Y      D+A  LFD M  R+ +SW++M+ G                  
Sbjct: 112 NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 171

Query: 304 -------NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVY 356
                  N    F  ++C  +  L   + V +Y+K  +I     E A  LF ++ E+++ 
Sbjct: 172 RCGARPDNYTLPFVIRACRDLKNLQMAL-VDMYVKCREI-----EDARFLFDKMQERDLV 225

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY---DFL 413
            WT +I  YA  G A +++ LF +M E G  PD+V  + ++ AC+  G + +     D++
Sbjct: 226 TWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYI 285

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
            +K    ++         M+D+  + G +E +      M    +V  WS+++ A   H  
Sbjct: 286 QRKKFQLDVILGTA----MIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 340

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
            + A   F+ +  +  L D   + LA++        +++++R
Sbjct: 341 GRKALDLFRMMLSSGMLPD--KITLASLLYACINCRNLTQVR 380


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/543 (34%), Positives = 292/543 (53%), Gaps = 48/543 (8%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            + + C   +   Q+F  +  ++V+SW  MI+ Y   G++ +  GLL +M  +G+ PD   
Sbjct: 562  MYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFA 621

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            + S + A      L+ GK++H +   + M+    + N L++MY KC  + EA+ +  R  
Sbjct: 622  VTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDR-- 679

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLISWTLMISGMLNQDAEFKYK 312
            +   DV+ W TL+ GY ++N  +E+  LF +M+     N ++ T ++             
Sbjct: 680  VTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFRPNAVTMTCIL------------P 727

Query: 313  SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYL 357
            + ASI +L  G  +H Y  +     D+               + +A  LF  +++KN+  
Sbjct: 728  AAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLIS 787

Query: 358  WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
            WT +IA Y M G  + AI LF +M  +G +PD  +F A+L AC H GL  EG  F     
Sbjct: 788  WTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQ 847

Query: 418  RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
            + Y I+PK++HY C+VDLL R G L+E+  FI SMPI PD SIW SLL  CR H+NVKLA
Sbjct: 848  KEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLA 907

Query: 478  EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
            E     + + +P N G +VLLANIYA+A R + + +++ K+   GL++  GYS IE    
Sbjct: 908  EKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSK 967

Query: 538  VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQETSLQHRERL 581
            VH F + +  +P    I   L+++   ++Q+G                  E    H  +L
Sbjct: 968  VHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKL 1027

Query: 582  AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
            AVAFG+++  E   IR+  N ++C  CH   K  S++ NREI++RD+ RFHRF+GG+CSC
Sbjct: 1028 AVAFGVLNLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSC 1087

Query: 642  RDY 644
            R Y
Sbjct: 1088 RGY 1090



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 170/385 (44%), Gaps = 55/385 (14%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQ----GDEPE----------IKIWNSIIENQLIN 117
           D ++ T +       GD   A  + RQ    G  P+          +    S+ E ++I+
Sbjct: 168 DVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIH 227

Query: 118 GYPQEVFAIYLYLVTRTVLL--NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
           G  +++       V   ++   ++CG++++  ++FD +  RD ISWN+MI    S G + 
Sbjct: 228 GLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHG 287

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS-------- 227
             + L SKM ++G     VT++S++ A   L    +GK +H +  +S +           
Sbjct: 288 TAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGI 347

Query: 228 --GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
              +L + LV MY KCG +  A+++       + +V +W  ++ GY K  E +E+  LF 
Sbjct: 348 DDAALGSKLVFMYVKCGDMASARRVFDAMS-SKGNVHVWNLIMGGYAKVGEFEESLSLFV 406

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV---------------YI 330
           +M E  +      IS +L         SCA  G + HG  V +               Y 
Sbjct: 407 QMHELGIAPDEHAISCLLKC---ITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYA 463

Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           K N I       A  +F+ +  ++   W SVI+  +  G   +AI+LF+ M   G + D 
Sbjct: 464 KSNMIGD-----AVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDS 518

Query: 391 VTFIALLSACSH-----GGLVDEGY 410
           VT +++L AC+       G V  GY
Sbjct: 519 VTLLSVLPACAQSRYWFAGRVVHGY 543



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 159/365 (43%), Gaps = 54/365 (14%)

Query: 139 KCGKLKEVCQLFDKLPNR--DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           KCG L E   +FD +P +  DV  W +++S Y   G ++E + L  +M   GVSPD   +
Sbjct: 148 KCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAV 207

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
             ++   + L  L  G+ +H  LE+  +  + ++ N L+ +Y +CG++ +A ++     +
Sbjct: 208 SCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFD--SM 265

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
              D + W +++ G   +     A  LF +M  +     ++ +  +L         +CA 
Sbjct: 266 HPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVL--------PACAG 317

Query: 317 IGALYHGIWVHVYIKKN---------QISIDNIELAYDL----------------FSEIS 351
           +G    G  VH Y  K+         Q  ID+  L   L                F  +S
Sbjct: 318 LGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMS 377

Query: 352 EK-NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS-----ACSHGGL 405
            K NV++W  ++  YA  G  ++++ LF++M E G  PD+     LL      +C+  GL
Sbjct: 378 SKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGL 437

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           V  GY        +  +    Q   C  ++    ++  + ++      MP    +S W+S
Sbjct: 438 VAHGY--------IVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTIS-WNS 488

Query: 464 LLRAC 468
           ++  C
Sbjct: 489 VISGC 493



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 125/268 (46%), Gaps = 26/268 (9%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F+++P +D ISWN++IS  +S G+  E + L  +M  +G   D VT++S++ A  + R 
Sbjct: 474 VFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRY 533

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
              G+ +H +  ++ +    SL N L+DMY  C       ++     + + +VV WT ++
Sbjct: 534 WFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIF--RSMGQKNVVSWTAMI 591

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           + Y+++   D+   L  EMV   +      ++  L+  A  +        +L  G  VH 
Sbjct: 592 TSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDE--------SLKQGKSVHG 643

Query: 329 YIKKNQ---------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           Y  +N                +   N+E A  +F  ++ K+V  W ++I  Y+      +
Sbjct: 644 YTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNE 703

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACS 401
           +  LF +M     +P+ VT   +L A +
Sbjct: 704 SFSLFSDMLLQ-FRPNAVTMTCILPAAA 730



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 32/239 (13%)

Query: 207 RDLEMGKNLHLFLEESTMKISGS----LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
           R LE  K  H  +  S+   +G     L   LV  Y KCG +GEA+ +         DV 
Sbjct: 111 RSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVR 170

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           +WT+L+S Y K+ +  EA  LF +M    +      +S +L        K  +S+G+L  
Sbjct: 171 VWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVL--------KCVSSLGSLTE 222

Query: 323 GIWVHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H  ++K       ++ N           +E A  +F  +  ++   W S+I     
Sbjct: 223 GEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFS 282

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
            G    A+DLF +M   GT+   VT +++L AC+  GL   GY  + K    Y++K  +
Sbjct: 283 NGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACA--GL---GYGLIGKAVHGYSVKSGL 336


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/546 (35%), Positives = 299/546 (54%), Gaps = 44/546 (8%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
            VL+N   KCG ++   Q+FD +  R ++SWNTMI  YT   M  E L +  +M  EG  
Sbjct: 102 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFK 161

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
             E T+ S++SA     D    K LH    ++++ ++  +   L+D+Y KCG I +A ++
Sbjct: 162 FSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQV 221

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                + +   V W+++V+GYV+S   +EA  L+      +L      +S ++       
Sbjct: 222 FE--SMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVIC------ 273

Query: 311 YKSCASIGALYHGIWVHVYIKKNQI---------SID------NIELAYDLFSEISEKNV 355
             +C+++ AL  G  +H  I+K+           ++D      ++  +Y +FSE+ EKN+
Sbjct: 274 --ACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNI 331

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
            LW ++I+ +A     ++ + LF +M++ G  P++VTF +LLS C H GLV+EG  F   
Sbjct: 332 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 391

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
               Y + P + HY CMVD+LGRAG L E+   I S+P  P  SIW SLL +CR  +N++
Sbjct: 392 MRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLE 451

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           LAE A K L E +P N G HVLL+NIYA   + +++++ R  LRD  +KK  G S I+  
Sbjct: 452 LAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIK 511

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRE 579
             VH F  G+  +P   EI  ML+ + + L++ G                 +E  +QH E
Sbjct: 512 DKVHIFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSE 571

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           +LA+ FGL+   E +T+RI+ NLRIC DCH FMK  S    R I++RD  RFH F  G C
Sbjct: 572 KLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHC 631

Query: 640 SCRDYW 645
           SC ++W
Sbjct: 632 SCGEFW 637



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 121/294 (41%), Gaps = 47/294 (15%)

Query: 242 GKIGEAQKLLGRYEIDEV--DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
           G + EA+   G+    E+  DV L   L++ Y K    + AR++FD M+ER+L+SW  MI
Sbjct: 77  GAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMI 136

Query: 300 S----------------GMLNQDAEFKYKSCASI----GALYHGI---WVHVYIKKNQIS 336
                             M N+  +F   + +S+    GA    +    +H    K  + 
Sbjct: 137 GLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLD 196

Query: 337 ID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
           ++                I  A  +F  + +K+   W+S++A Y  + + ++A+ L+   
Sbjct: 197 LNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRA 256

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
           +    + +Q T  +++ ACS+   + EG   +    R       +      VD+  + G 
Sbjct: 257 QRMSLEQNQFTLSSVICACSNLAALIEGKQ-MHAVIRKSGFGSNVFVASSAVDMYAKCGS 315

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           L ES   I S     ++ +W++++     H   K     F+ + +     DG H
Sbjct: 316 LRESY-IIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQ-----DGMH 363


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/658 (29%), Positives = 330/658 (50%), Gaps = 85/658 (12%)

Query: 42  LDVIMVERSCSSID---EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           + ++ +  +C+S+    + + IHS+ I      D  +   + +     G +  A ++   
Sbjct: 260 ISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNV 319

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR-- 156
            +  ++  WN+     ++ GY Q                   G      +LF+ +     
Sbjct: 320 MEFKDVVSWNA-----MVTGYTQS------------------GNFGAAFELFENMRKENI 356

Query: 157 --DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
             DVI+W+ +I+ Y   G  +E L    +M  +G  P+ VT++SL+SA   L  L  G  
Sbjct: 357 PLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGME 416

Query: 215 LHLF-LEESTMKISGS-----------LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
           +H + L++  + +              + N L+DMY KC     A+ +       E +VV
Sbjct: 417 IHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVV 476

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVER--NLISWTLMISGMLNQDAEFKYKSCASIGAL 320
            WT ++ GY +  + ++A ++F EM+ +   +      IS +L         +CA + AL
Sbjct: 477 TWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCIL--------MACAHLAAL 528

Query: 321 YHGIWVHVYIKKNQ-----------ISID------NIELAYDLFSEISEKNVYLWTSVIA 363
             G  +H Y+ ++              ID      +++ A ++F  + ++N   WTS+++
Sbjct: 529 RMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMS 588

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y M G  ++A+D+F +M++ G  PD ++F+ LL ACSH G+VD+G ++     R Y++ 
Sbjct: 589 GYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVV 648

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
              +HY C++DLL R G L+++   I  MP+ P   IW +LL ACR H NV+LAE+A   
Sbjct: 649 ASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNK 708

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L      NDG++ L++NIYA A R  D++RIR  ++  G+KK+ G S ++       F  
Sbjct: 709 LVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFV 768

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGL 587
           GD  +P S EIY +L  +   ++  G + ET+                +H E+LA+A+GL
Sbjct: 769 GDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGL 828

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++TS    IRI  NLR+CGDCHS     S++ + EI++RD+ RFH F+ G CSC  YW
Sbjct: 829 LTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 122/579 (21%), Positives = 220/579 (37%), Gaps = 138/579 (23%)

Query: 49  RSCSSIDEFERIHSHLITT--------------------NLMRDPQISTQVFEFLVFTGD 88
           + C S++   +IH  +I                      + +    + T V    +  G 
Sbjct: 39  KECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLACGA 98

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV---------TRTVLLNK 139
              A  ++ +        WN ++   +  G+      +   ++         T    L  
Sbjct: 99  TKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKA 158

Query: 140 CGKLKEVC--------------------------------------QLFDKLPNR---DV 158
           CG+L   C                                       +FD++  +   DV
Sbjct: 159 CGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDV 218

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMG------AEGVSPDEVTMVSLISARTKLRDLEMG 212
           ISWN++++ +      R  L L S+M       A     D +++V+++ A   L+ L   
Sbjct: 219 ISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQI 278

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K +H +   +       + N L+D Y KCG + +A K+    E    DVV W  +V+GY 
Sbjct: 279 KEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK--DVVSWNAMVTGYT 336

Query: 273 KSNERDEARRLFDEMVERNL----ISWTLMISGM----LNQDAEFKYK------------ 312
           +S     A  LF+ M + N+    I+W+ +I+G      +Q+A   ++            
Sbjct: 337 QSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSV 396

Query: 313 -------SCASIGALYHGIWVHVY-IKKNQISID-------------------------- 338
                  +CAS+GAL  G+ +H Y +KK  +S+D                          
Sbjct: 397 TIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCR 456

Query: 339 NIELAYDLFSEIS--EKNVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFI 394
           + + A  +F  I   E+NV  WT +I  YA  G +  A+ +F EM  +     P+  T  
Sbjct: 457 SFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTIS 516

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSMP 453
            +L AC+H   +  G    +  +R +  +P +     C++D+  + G ++ + N   SMP
Sbjct: 517 CILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP 576

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
              +VS W+S++     H   K A   F  + +   + D
Sbjct: 577 KRNEVS-WTSMMSGYGMHGRGKEALDIFDKMQKAGFVPD 614


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/636 (30%), Positives = 333/636 (52%), Gaps = 66/636 (10%)

Query: 41  SLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD 100
           +L ++  +R C  +    +IH H++    M    + + + +     G +  A+++  +  
Sbjct: 148 TLLILASKRGCVKLGR--QIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELP 205

Query: 101 EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVIS 160
           E  + ++N++I                         L +CG++++  +LF ++  RD IS
Sbjct: 206 EKNVVMYNTLIMG-----------------------LMRCGRVEDSKRLFFEMRERDSIS 242

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           W +MI+ +T  G+ R+ + +  +M  E +  D+ T  S+++A   +  L+ GK +H ++ 
Sbjct: 243 WTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYII 302

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
            +  K +  + + LVDMY KC  I  A+ +  +      +VV WT ++ GY ++   +EA
Sbjct: 303 RTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCK--NVVSWTAMLVGYGQNGYSEEA 360

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ----IS 336
            + F +M +  +      +  +++        SCA++ +L  G   H     +     I+
Sbjct: 361 VKTFSDMQKYGIEPDDFTLGSVIS--------SCANLASLEEGAQFHARALTSGLISFIT 412

Query: 337 IDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
           + N           IE ++ LF+EIS K+   WT++++ YA  G A + I LF  M   G
Sbjct: 413 VSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHG 472

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
            KPD+VTFI +LSACS  GLV++G          + I P   HY CM+DL  RAG +EE+
Sbjct: 473 LKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEA 532

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
            NFI  MP  PD   W++LL +CR + N+ + + A + L E DP N  ++VLL+++YA  
Sbjct: 533 RNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAK 592

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
           G+ ++++R+R  +RD GL+K+ G S I+    VH F++ D  NP S++IY  L ++   +
Sbjct: 593 GKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKM 652

Query: 566 QQQG--------LQETS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
            ++G        L +            H E+LA+AFGL+       IR+V NLR+C DCH
Sbjct: 653 IKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCH 712

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  K  S++ NREI++RD  RFH F+ G CSC D+W
Sbjct: 713 NATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 224/477 (46%), Gaps = 71/477 (14%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           + +HSH+I T    +  +   +       G + YA ++  Q   P +  WN+I+      
Sbjct: 29  KNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILS----- 83

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
                               +K G++ E+  LFD +P RD +SWN++IS Y   G+  + 
Sbjct: 84  ------------------AYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQS 125

Query: 178 LGLLSKM--GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           +   + M       + + +T  +L+   +K   +++G+ +H  + +        + + LV
Sbjct: 126 VKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLV 185

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           DMY K G I  A+K+    E+ E +VV++ TL+ G ++    ++++RLF EM ER+ ISW
Sbjct: 186 DMYSKMGMISCARKVFD--ELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISW 243

Query: 296 TLMISGM----LNQDA---------------EFKYKS----CASIGALYHGIWVHVYI-- 330
           T MI+G     L++DA               ++ + S    C  + AL  G  VH YI  
Sbjct: 244 TSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIR 303

Query: 331 --KKNQISI-----------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
              K+ I +            NI+ A  +F +++ KNV  WT+++  Y   G++++A+  
Sbjct: 304 TDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKT 363

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M++ G +PD  T  +++S+C++   ++EG  F + ++    +   +     +V L G
Sbjct: 364 FSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHA-RALTSGLISFITVSNALVTLYG 422

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRA----CRCHQNVKLAEHAFKHLTETDPL 490
           + G +E+S      +    +V+ W++L+       + ++ + L E    H  + D +
Sbjct: 423 KCGSIEDSHRLFNEISFKDEVT-WTALVSGYAQFGKANETIGLFESMLAHGLKPDKV 478



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 140/332 (42%), Gaps = 52/332 (15%)

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +L+    +  +    KNLH  + ++       LLN L+  Y K G I  A K+    ++ 
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFD--QMP 71

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG---------------- 301
             ++  W T++S Y K     E   LFD M  R+ +SW  +ISG                
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 302 MLNQDAEFKY--------------KSCASIGALYHGIWV------HVYIKKNQISIDN-- 339
           ML  D  F                + C  +G   HG  V      +V++    + + +  
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 340 --IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             I  A  +F E+ EKNV ++ ++I      G  + +  LF EM E     D +++ +++
Sbjct: 192 GMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRER----DSISWTSMI 247

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN---FITSMPI 454
           +  +  GL  +  D   ++ ++ N++     +G ++   G    L+E      +I     
Sbjct: 248 TGFTQNGLDRDAIDIF-REMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY 306

Query: 455 PPDVSIWSSLLRA-CRCHQNVKLAEHAFKHLT 485
             ++ + S+L+   C+C +N+K AE  FK +T
Sbjct: 307 KDNIFVASALVDMYCKC-KNIKSAEAVFKKMT 337


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 185/513 (36%), Positives = 275/513 (53%), Gaps = 39/513 (7%)

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MI      G+  + LG  S M    V P + +   ++ +     + ++G+  H  + +  
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
            +    L   L+D Y K G + EA+ L         + V W T++S YV+  E   A  +
Sbjct: 61  FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISM 120

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----- 338
           F +M   N+    + +  +L+        +CA +GAL  G W+H YI+  ++ ID     
Sbjct: 121 FQQMQSENVKPTEVTMVSLLS--------ACAHLGALDMGEWIHGYIRTKRLKIDVVLGN 172

Query: 339 ----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                      +E A D+F  +S KN++ W S+I    M G  ++AI  F+ ME+ G KP
Sbjct: 173 ALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKP 232

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D VTF+ +LS CSH GL+  G  + S+   VY ++P ++HYGCMVDLLGRAG+L+E+   
Sbjct: 233 DGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALEL 292

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I +MP+ P+  +  SLLRAC+ H++ KL E   + L E DP + G +V L+N+YA   R 
Sbjct: 293 IRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRW 352

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
           DD++  R  +   G+ K  G S IE    VH+F +GD  +P   +I   L+EI   L+ Q
Sbjct: 353 DDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQ 412

Query: 569 GL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G                +E +++ H ER+AVAFGL+ST    TIR+V NLR C DCHS M
Sbjct: 413 GHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAM 472

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K+ S  + REI++RD  RFH F+ G CSC DYW
Sbjct: 473 KLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 147/326 (45%), Gaps = 42/326 (12%)

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQ--EVFAIYLY-------LVTRTVLLN- 138
           LG+   ++R    P    ++ I+ +  I+G  Q  E F   +        ++ +T LL+ 
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 139 --KCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
             K G ++E   LFD +   N + ++WNTMIS Y   G +   + +  +M +E V P EV
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           TMVSL+SA   L  L+MG+ +H ++    +KI   L N L+DMY KCG +  A  +   +
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVF--H 192

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            +   ++  W +++ G   +   +EA   F  M +  +    +   G+L+         C
Sbjct: 193 GLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILS--------GC 244

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           +  G L  G          Q     +   Y L     E  V  +  ++     AG+ ++A
Sbjct: 245 SHSGLLSAG----------QRYFSEMLGVYGL-----EPGVEHYGCMVDLLGRAGYLKEA 289

Query: 375 IDLFLEMEETGTKPDQVTFIALLSAC 400
           ++L   M     KP+ +   +LL AC
Sbjct: 290 LELIRAMP---MKPNSMVLGSLLRAC 312



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 23/200 (11%)

Query: 36  NVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           NV P  + ++ +  +C+   ++D  E IH ++ T  L  D  +   + +     G L  A
Sbjct: 128 NVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAA 187

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC--- 140
             +        I  WNSII    +NG  +E  A ++ +         VT   +L+ C   
Sbjct: 188 IDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHS 247

Query: 141 GKLKEVCQLFDKLPN-----RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           G L    + F ++         V  +  M+      G  +E L L+  M    + P+ + 
Sbjct: 248 GLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM---PMKPNSMV 304

Query: 196 MVSLISARTKLRDLEMGKNL 215
           + SL+ A    +D ++G+ +
Sbjct: 305 LGSLLRACQIHKDTKLGEQV 324


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 292/541 (53%), Gaps = 41/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KC  + +   +F  +P RD+I+WN +IS ++      E   L   M  EG+  ++ T
Sbjct: 256 MYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTT 315

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + +++ +   L+   M + +H    +S  +    ++N L+D Y KCG + +A ++     
Sbjct: 316 LSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESP 375

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           I  VD+VL+T+LV+ Y +  + +EA RL+ EM +R +   + + S +LN        +CA
Sbjct: 376 I--VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLN--------ACA 425

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           S+ A   G  VHV+I K     D               +IE A   FS I  + +  W++
Sbjct: 426 SLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSA 485

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I   A  G+ ++A+ LF +M + G  P+ +T +++L AC+H GLV E   + +    ++
Sbjct: 486 MIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILF 545

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I+P  +HY CM+DLLGRAG LE +   +  MP   +  +W +LL A R H+N+ L E A
Sbjct: 546 GIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQA 605

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L   +P   G HVLLANIYA  G  D ++R+R  ++D  +KK+ G S +E    V+ 
Sbjct: 606 AEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYT 665

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVA 584
           F  GD  +  S EIY  L+E+   L++ G                 ++    H E+LAVA
Sbjct: 666 FIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVA 725

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI+T     IR+  NLRIC DCH+ +K  S++ +REI++RD  RFH F+ G CSC +Y
Sbjct: 726 FGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEY 785

Query: 645 W 645
           W
Sbjct: 786 W 786



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 178/428 (41%), Gaps = 59/428 (13%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
            +L  KCG   +   LFD +P+R V+SWN + SCY    M+ E + L   M   G+ P+E
Sbjct: 52  VILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNE 111

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            ++ S+I+  T L D   G+ +H +L +          N LVDMY K G + +A  +   
Sbjct: 112 FSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFD- 170

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            EI + D+V W  +++G V       A  L  EM +  +      +S  L        K+
Sbjct: 171 -EIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSAL--------KA 221

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           CA +     G  +H  + K  +  D               +++ A  +F  + E+++  W
Sbjct: 222 CAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAW 281

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVD 407
            +VI+ ++     ++A  LF  M   G   +Q T   +L + +           H   + 
Sbjct: 282 NAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLK 341

Query: 408 EGYDF-----------------LSKKSRVYNIKP--KMQHYGCMVDLLGRAGHLEESANF 448
            G++F                 +   +RV+   P   +  +  +V    + G  EE+   
Sbjct: 342 SGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRL 401

Query: 449 ITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHVLLANIYAK 504
              M    I PD  + SSLL AC      +  +    H+ +   ++D  A   L N+YAK
Sbjct: 402 YLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAK 461

Query: 505 AGRLDDMS 512
            G ++D S
Sbjct: 462 CGSIEDAS 469



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 25/237 (10%)

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G+  +E    S++ A T  +DL +GK +H  +  +       + N LV +Y KCG  G+A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           + L     I +  VV W  L S YV S+   EA  LF +MV   +      +S M+N   
Sbjct: 65  RSLFD--AIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMIN--- 119

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISE 352
                 C  +     G  +H Y+ K     D                +E A  +F EI++
Sbjct: 120 -----VCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAK 174

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
            ++  W ++IA   +  +  +A++L  EM ++G  P+  T  + L AC+   L + G
Sbjct: 175 PDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELG 231



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 105/238 (44%), Gaps = 46/238 (19%)

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAY----------DLFSEISEKNVYLWTSVIAAYA 366
           +G   HGI V      ++   +++ + Y           LF  I +++V  W ++ + Y 
Sbjct: 28  LGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYV 87

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDFLSK 415
            +    +A+ LF +M  +G +P++ +  ++++ C+           HG L+  GYD    
Sbjct: 88  HSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYD---- 143

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
            S  ++          +VD+  + G LE++++    +   PD+  W++++  C  H+   
Sbjct: 144 -SDAFSANA-------LVDMYAKVGILEDASSVFDEIA-KPDIVSWNAIIAGCVLHEYHH 194

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
            A    + + ++  +      L + + A AG         M LR++G  +QL  SLI+
Sbjct: 195 RALELLREMNKSG-MCPNMFTLSSALKACAG---------MALRELG--RQLHSSLIK 240


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 289/529 (54%), Gaps = 42/529 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           Q+F++   +   +W+++IS +         +    +M  E + PD+    S   A   L 
Sbjct: 110 QVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILG 169

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
             ++GK++H  + ++   +   + + LVDMY KCG I EA+ +    E+   +VV W+ +
Sbjct: 170 RCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFD--EMPHRNVVSWSGM 227

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS-----IGALYH 322
           + GY +  E +EA RLF E +   L      +S ++        + C S     +G   H
Sbjct: 228 IYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVI--------RVCGSATLLELGKQIH 279

Query: 323 GIWVHV------YIKKNQISIDN----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
           G+          ++  + IS+ +    IE AY +F E+  KN+ +W +++ A A   H +
Sbjct: 280 GLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTK 339

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +A DLF +ME  G +P+ +TF+ +L ACSH GLV+EG  + +   + Y I+P  QHY  M
Sbjct: 340 EAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKK-YEIEPGTQHYASM 398

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAG L+E+ + I  MP  P  S+W + +  CR H N  LA  A   + E   ++ 
Sbjct: 399 VDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSS 458

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G HV+L+N YA AGR +D ++ R  LRD G+KK+ G S IE+G  VHKF +GD F+   +
Sbjct: 459 GLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMK 518

Query: 553 EIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTI 596
           EIY  L ++   +++ G                  +T   H ERLA+AFGLIS      I
Sbjct: 519 EIYQKLEDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPI 578

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           RI+ NLR+CGDCH+ +K  S++  R I++RDN RFHRF+ G+CSC DYW
Sbjct: 579 RIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 1/164 (0%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG ++   ++FD++P +++  WN M+         +E   L +KM   G+ P+ +T
Sbjct: 300 LYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFIT 359

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            + ++ A +    +E GK     +++  ++        +VD+  + GK+ EA  ++    
Sbjct: 360 FLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMP 419

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
            +  + V W   ++G       D A    D++ E   +S  L +
Sbjct: 420 TEPTESV-WGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHV 462



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           L+  +F E   K+   W+SVI+++A       AI  F  M      PD   F +   AC+
Sbjct: 107 LSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACA 166

Query: 402 HGGLVDEGYDFLSKKSRV-YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
             G  D G        +  Y++   +     +VD+  + G ++E+ N    MP    VS 
Sbjct: 167 ILGRCDVGKSVHCLVIKTGYDVDVFVG--SSLVDMYAKCGDIKEARNVFDEMPHRNVVS- 223

Query: 461 WSSLLRACRCHQNVKLAEH 479
           WS ++     +   +L EH
Sbjct: 224 WSGMI-----YGYTQLGEH 237


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 303/589 (51%), Gaps = 70/589 (11%)

Query: 96  IRQGDEPEIKI------WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL 149
           I QG E E +        +SI++N LIN Y                  +KCG L+   ++
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMY------------------SKCGSLESARKV 220

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FD+L NRDVI+WNTMIS Y   G   + L L  +MG     P+ VT + L++A T L DL
Sbjct: 221 FDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDL 280

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK-IGEAQKLLGRYEIDEVDVVLWTTLV 268
           E G+ +H  + E   +    + N L++MY KC   + EA+++  R      DV+ W  L+
Sbjct: 281 EQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR--DVITWNILI 338

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
             YV+  +  +A  +F +M   N+    + +S +L+        +CA +GA   G  VH 
Sbjct: 339 VAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLS--------ACAVLGAKRQGKAVHA 390

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            I   +   D               +++    +F+ I +K++  W+++IAAYA  GH++ 
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRT 450

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
            ++ F E+ + G   D VT ++ LSACSHGG++ EG          + + P  +H+ CMV
Sbjct: 451 GLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMV 510

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLL RAG LE + N I  MP  PD   W+SLL  C+ H + K A      L E +  ++ 
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570

Query: 494 AHV-LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           + V LL+N+YA+AGR DD+ + R +      +K  G S IE    VH+F +GD  +P  E
Sbjct: 571 STVTLLSNVYAEAGRWDDVRKTRNR---RAARKNPGCSYIEINDTVHEFVAGDKSHPEEE 627

Query: 553 EIYLMLNEIEMTLQQQGL------------QETSLQ----HRERLAVAFGLISTSEKTTI 596
            I   +  +   ++  G             +E   Q    H E+LA+A+GLIST   T +
Sbjct: 628 LIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPL 687

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            IV NLR C DCH+  K  S++  R+IV+RD+ RFH F+ G CSC+DYW
Sbjct: 688 HIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 142/283 (50%), Gaps = 23/283 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG + +   +F  + + + +SW  +++ +   G YRE LG   +M  EG+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 196 MVSLISARTKLRDLEMGKNLH-LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V  I   +  +DL+ G+ LH + LE   ++    L   L+ MY +C  +  A+K     
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFD-- 118

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER-------NLIS-----WTLMISGM 302
           E+ +  +V W  L++GY ++ +   A +++ +MV +       + I+     +   + G 
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGD 178

Query: 303 LNQDAEFKYKSCASIGA---LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359
           ++Q  E + ++ AS  A   +     +++Y K       ++E A  +F  +  ++V  W 
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSK-----CGSLESARKVFDRLKNRDVIAWN 233

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           ++I+ YA  G A +A++LF  M     KP+ VTFI LL+AC++
Sbjct: 234 TMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 304/589 (51%), Gaps = 70/589 (11%)

Query: 96  IRQGDEPEIKI------WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL 149
           I QG E E +        +SI++N LIN Y                  +KCG L+   ++
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMY------------------SKCGSLESARKV 220

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FD+L NRDVI+WNTMIS Y   G   + L L  +MG     P+ VT + L++A T L DL
Sbjct: 221 FDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDL 280

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK-IGEAQKLLGRYEIDEVDVVLWTTLV 268
           E G+ +H  ++E   +    + N L++MY KC   + EA+++  R      DV+ W  L+
Sbjct: 281 EQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR--DVITWNILI 338

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
             YV+  +  +A  +F +M   N+    + +S +L+        +CA +GA   G  VH 
Sbjct: 339 VAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLS--------ACAVLGAKRQGKAVHA 390

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            I   +   D               +++    +F+ I +K++  W+++IAAYA  GH++ 
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRT 450

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
            ++ F E+ + G   D VT ++ LSACSHGG++ EG          + + P  +H+ CMV
Sbjct: 451 GLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMV 510

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLL RAG LE + N I  MP  PD   W+SLL  C+ H + K A      L E +  ++ 
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570

Query: 494 AHV-LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           + V LL+N+YA+AGR DD+ + R +      +K  G S IE    VH+F +GD  +P  E
Sbjct: 571 STVTLLSNVYAEAGRWDDVRKTRNR---RAARKNPGCSYIEINDTVHEFVAGDKSHPEEE 627

Query: 553 EIYLMLNEIEMTLQQQGL------------QETSLQ----HRERLAVAFGLISTSEKTTI 596
            I   +  +   ++  G             +E   Q    H E+LA+A+GLIST   T +
Sbjct: 628 LIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPL 687

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            IV NLR C DCH+  K  S++  R+IV+RD+ RFH F+ G CSC+DYW
Sbjct: 688 HIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 142/283 (50%), Gaps = 23/283 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG + +   +F  + + + +SW  +++ +   G YRE LG   +M  EG+ PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 196 MVSLISARTKLRDLEMGKNLH-LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V  I   +  +DL+ G+ LH + LE   ++    L   L+ MY +C  +  A+K     
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFD-- 118

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER-------NLIS-----WTLMISGM 302
           E+ +  +V W  L++GY ++ +   A +++ +MV +       + I+     +   + G 
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGD 178

Query: 303 LNQDAEFKYKSCASIGA---LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359
           ++Q  E + ++ AS  A   +     +++Y K       ++E A  +F  +  ++V  W 
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSK-----CGSLESARKVFDRLKNRDVIAWN 233

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           ++I+ YA  G A +A++LF  M     KP+ VTFI LL+AC++
Sbjct: 234 TMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 201/612 (32%), Positives = 311/612 (50%), Gaps = 88/612 (14%)

Query: 94  QIIRQG---DEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLF 150
           QII+ G    EP        I N L+N Y                   KCG +++  QLF
Sbjct: 28  QIIKAGLNQHEP--------IPNTLLNAY------------------GKCGLIQDALQLF 61

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           D LP RD ++W ++++           L +   + + G  PD     SL+ A   L  L 
Sbjct: 62  DALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLH 121

Query: 211 M--GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           +  GK +H     S       + + L+DMY K G     + +     I  ++ + WTT++
Sbjct: 122 VKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFD--SISSLNSISWTTMI 179

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DA-----EFKYK------- 312
           SGY +S  + EA RLF +   RNL +WT +ISG++      DA     E +++       
Sbjct: 180 SGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDP 239

Query: 313 --------SCASI-----GALYHGIWVHV------YIKKNQISI----DNIELAYDLFSE 349
                   +CA++     G   HG+ + +      +I    I +     ++  A  +F E
Sbjct: 240 LVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCE 299

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           +  K+V  WTS+I   A  G A++A+ L+ EM   G KP++VTF+ L+ ACSH GLV +G
Sbjct: 300 MCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKG 359

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
                     + I P +QHY C++DL  R+GHL+E+ N I +MP+ PD   W++LL +C+
Sbjct: 360 RTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCK 419

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            H N ++A     HL    P +  +++LL+NIYA AG  +D+S++R  +  +  KK  GY
Sbjct: 420 RHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGY 479

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------QETSLQ 576
           S I+ G   H F +G+  +P  +EI  ++ E++  ++++G              QE   Q
Sbjct: 480 SCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQ 539

Query: 577 ---HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
              H ERLAVA+GL+     T IRIV NLR+CGDCH+ +K+ S + NREI +RD  R+H 
Sbjct: 540 LFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHH 599

Query: 634 FQGGQCSCRDYW 645
           F+ G CSC D+W
Sbjct: 600 FKDGNCSCNDFW 611



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 31/187 (16%)

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           + K LH  + ++ +     + N L++ Y KCG I +A +L     +   D V W +L++ 
Sbjct: 21  LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFD--ALPRRDPVAWASLLTA 78

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCASIGALY--HGIWV 326
              SN    A            IS +L+ +G       F    K+CA++G L+   G  V
Sbjct: 79  CNLSNRPHRALS----------ISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQV 128

Query: 327 HVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H     +  S D++               +    +F  IS  N   WT++I+ YA +G  
Sbjct: 129 HARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRK 188

Query: 372 QKAIDLF 378
            +A  LF
Sbjct: 189 FEAFRLF 195


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 191/564 (33%), Positives = 304/564 (53%), Gaps = 63/564 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L    ++F+ + + +   WN +I  Y++            +M +  V  +  T   L+
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSL--LNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            A   L  L MG+ L +      +     +  LN L+ +Y  CG+I  A++L     I E
Sbjct: 96  RACRNL--LAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFD--NIPE 151

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN-------------- 304
            D V W  ++ GY+KS +   A  +F +M  +N++SWT +ISG++               
Sbjct: 152 RDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEM 211

Query: 305 QDAEFKY---------KSCASIGALYHGIWVHVYIKKNQISID---------------NI 340
           Q+A F+           +CA++GAL  G W+H Y+  N + +D               ++
Sbjct: 212 QNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDM 271

Query: 341 ELAYDLFSEI--SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           E A  +F ++  ++K+VY+WT++I  +A+ G   +A++ F  M   G +P+ +TF A+L 
Sbjct: 272 EEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLR 331

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACS+GGLV+EG +        YN+ P ++HYGCMVDLLGR+G L+E+   I  MP+ P  
Sbjct: 332 ACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSA 391

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            IW +LL+AC  H++  L      HL E D  + G ++ LA I A  G+  + + +R+K+
Sbjct: 392 VIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKM 451

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ-QGLQ------ 571
           + +G+    G S +   G VH+F +G   +P  E+I L L +I   L+Q +G +      
Sbjct: 452 KSLGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDL 511

Query: 572 ---------ETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                    ET++ QH E+LA+AFGLI+T   TTIR++ NLRIC DCH+  K+ SQ+Y+R
Sbjct: 512 LLDLENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSR 571

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           EI++RD  RFH F+ G CSC+DYW
Sbjct: 572 EIIMRDRVRFHHFRDGSCSCKDYW 595


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 214/669 (31%), Positives = 346/669 (51%), Gaps = 82/669 (12%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV--FTGDLGYAQQIIRQGDEPEIKI 106
           ++C +  E  ++H+  I T  +  P +S+++          +L YA  +     EP +  
Sbjct: 23  QNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVS 82

Query: 107 WNSIIENQLINGYPQEVFAIYLYLV--------TRTVLLNKCGKL------KEVCQLFDK 152
           WN +I+  + N    +  A++  L+        T   +L  C +L      K++  L  K
Sbjct: 83  WNLLIKCYIENQRSNDAIALFCKLLCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLK 142

Query: 153 LP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           +    D    ++++S Y+  G       +  +M  +    D V+  SLI    +  ++E+
Sbjct: 143 IGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDK----DVVSWNSLIDGYARCGEIEL 198

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
              L +F EE   K S S    L+D   K GK+  A+ +  R  I   + V W  +++GY
Sbjct: 199 A--LEMF-EEMPEKDSFSW-TILIDGLSKSGKLEAARDVFDRMPIR--NSVSWNAMINGY 252

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQDAEFKY---- 311
           +K+ + + A+ LFD+M ER+L++W  MI+G                ML +D    Y    
Sbjct: 253 MKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTIL 312

Query: 312 ---KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
               + + + +L  G WVH YI K+    D               +++ A  +F  I +K
Sbjct: 313 GAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKK 372

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
            +  WTSVI    M G  ++ ++LF EM  TG KP  +TFI +L+ACSH G  ++ + + 
Sbjct: 373 KLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYF 432

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
              +  Y IKP ++HYGC++D+L RAGHLEE+ + I  MPI  +  IW+SLL   R H N
Sbjct: 433 KMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGN 492

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
           +++ E+A +HL +  P   G +V+L+N+YA AG  + + ++R  ++  G+KK  G S IE
Sbjct: 493 IRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIE 552

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIE----------------MTLQQQGLQETSLQ- 576
             G +H+F  GD  +P +EEIY+ L E++                + L++   +E  L+ 
Sbjct: 553 HQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELET 612

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H ERLA+AFGL++    + IRI+ NLRIC DCH+  K+ S +YNREI+IRD  RFH F+ 
Sbjct: 613 HSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKS 672

Query: 637 GQCSCRDYW 645
           G CSC+D+W
Sbjct: 673 GSCSCKDFW 681


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 188/541 (34%), Positives = 294/541 (54%), Gaps = 46/541 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +     +F+ +  +D +SWN++IS Y   G   E + L   M       D +T + 
Sbjct: 354 KCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLM 413

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           LIS  T+L DL+ GK LH    +S + I  S+ N L+DMY KCG++G++ K+     +  
Sbjct: 414 LISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFN--SMGT 471

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMISGMLNQDAEFKYKSCAS 316
           +D V W T++S  V+  +     ++  +M +  ++    T +++             CAS
Sbjct: 472 LDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVT----------LPMCAS 521

Query: 317 IGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVYLWTSV 361
           + A   G  +H  + +    +++ I N           +E ++ +F  +S ++V  WT +
Sbjct: 522 LAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGM 581

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I AY M G  +KA++ F++ME++G  PD V FIAL+ ACSH GLV++G     K    Y 
Sbjct: 582 IYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYK 641

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I P ++HY C+VDLL R+  + ++  FI +MPI PD SIW+S+LRACR   +++ AE   
Sbjct: 642 IDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVS 701

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           + + E +P + G  +L +N YA   + D +S IR  +RD  +KK  GYS IE G  VH F
Sbjct: 702 RRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVF 761

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ-----------------HRERLAVA 584
            SGD   P SE I+  L  +   + ++G    S +                 H ERLA+A
Sbjct: 762 CSGDDSAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIA 821

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGL++T   T ++++ NLR+C DCH   K+ S++  REI++RD  RFH F+ G CSC+D 
Sbjct: 822 FGLLNTEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDR 881

Query: 645 W 645
           W
Sbjct: 882 W 882



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 184/395 (46%), Gaps = 48/395 (12%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
           GDL Y +QI+  G E ++ + N++++                       + ++ G L   
Sbjct: 125 GDLVY-KQILEMGFESDLYVGNALVD-----------------------MYSRMGLLSRA 160

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
            Q+FD++P RD++SWN++IS Y+S G Y E L +  ++    + PD  T+ S++ A   L
Sbjct: 161 RQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANL 220

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
             ++ G+ LH F  +S +     + N L+ MY K  +  +A+++    E+   D V + T
Sbjct: 221 LVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFD--EMVVRDSVTYNT 278

Query: 267 LVSGYVKSNERDEARRLFDEMVERN-----LISWTLMISGMLNQDAEFKY------KSCA 315
           ++ GY+K    +E+ ++F E +++       ++  L   G L   +  KY      ++  
Sbjct: 279 MICGYLKLEMVEESVKMFLENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGF 338

Query: 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            + +    I + VY K       ++  A D+F+ +  K+   W S+I+ Y  +G   +A+
Sbjct: 339 VLESTVKNILIDVYAK-----CGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAM 393

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK--KSRVYNIKPKMQHYGCMV 433
            LF  M     + D +T++ L+S  +    +  G    S   KS +Y     +     ++
Sbjct: 394 KLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIY---IDLSVSNALI 450

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           D+  + G + +S     SM    D   W++++ AC
Sbjct: 451 DMYAKCGEVGDSLKIFNSMG-TLDTVTWNTVISAC 484



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 151/330 (45%), Gaps = 34/330 (10%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P ++V  WN++I  ++  G + + L    K+    VSPD+ T  S+I A   L D EMG 
Sbjct: 67  PAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            ++  + E   +    + N LVDMY + G +  A+++    E+   D+V W +L+SGY  
Sbjct: 127 LVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFD--EMPVRDLVSWNSLISGYSS 184

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK- 332
               +EA  ++ E+    ++  +  +S +L         + A++  +  G  +H +  K 
Sbjct: 185 HGYYEEALEIYHELRNSWIVPDSFTVSSVL--------PAFANLLVVKQGQGLHGFTLKS 236

Query: 333 --NQISIDNIEL------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
             N +S+ N  L            A  +F E+  ++   + ++I  Y      ++++ +F
Sbjct: 237 GVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMF 296

Query: 379 LEMEETGTKPDQVTFIALLSACSH---GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           LE  +   KPD +T  ++L AC H     L    Y+++ +   V     K      ++D+
Sbjct: 297 LENLDQ-FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVK----NILIDV 351

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             + G +  + +   SM     VS W+S++
Sbjct: 352 YAKCGDMITARDVFNSMECKDTVS-WNSII 380



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 114/285 (40%), Gaps = 57/285 (20%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           I+++++    + +  +   + +     GD+  A+ +    +  +   WNSII   + +G 
Sbjct: 329 IYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGD 388

Query: 120 PQEVF--------------------------------------------AIYLYLVTRTV 135
             E                                               IY+ L     
Sbjct: 389 LMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNA 448

Query: 136 LLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
           L++   KCG++ +  ++F+ +   D ++WNT+IS     G +  GL + ++M    V PD
Sbjct: 449 LIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPD 508

Query: 193 EVTMVSLISARTKLRDLEMGKNLHL----FLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
             T +  +     L    +GK +H     F  ES ++I     N L++MY KCG +  + 
Sbjct: 509 MATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIG----NALIEMYSKCGCLESSF 564

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           ++  R  +   DVV WT ++  Y    E ++A   F +M +  ++
Sbjct: 565 RVFER--MSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIV 607



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 45/267 (16%)

Query: 41  SLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV---FTGDLGYAQQ--- 94
           +LD +      S+   F    + L  T  MR  ++   +  FLV       L   +    
Sbjct: 471 TLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKE 530

Query: 95  ----IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLF 150
               ++R G E E++I N++IE                       + +KCG L+   ++F
Sbjct: 531 IHCCLLRFGYESELQIGNALIE-----------------------MYSKCGCLESSFRVF 567

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSK---MGAEGVSPDEVTMVSLISARTKLR 207
           +++  RDV++W  MI  Y   GMY EG   L     M   G+ PD V  ++LI A +   
Sbjct: 568 ERMSRRDVVTWTGMIYAY---GMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSG 624

Query: 208 DLEMGKNLHLFLEEST-MKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
            +E  K L  F +  T  KI   + +Y  +VD+  +  KI +A++ +    I E D  +W
Sbjct: 625 LVE--KGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPI-EPDASIW 681

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERN 291
            +++     S + + A R+   ++E N
Sbjct: 682 ASVLRACRTSGDMETAERVSRRIIELN 708


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 189/607 (31%), Positives = 314/607 (51%), Gaps = 65/607 (10%)

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL--------LNKCGKLKEVC 147
           IR G  P++ + N++I+     G  +    ++  +  + V+         ++ G  +   
Sbjct: 292 IRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAF 351

Query: 148 QLFDKLPNR----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
           +LF  +       DV++W  +I+ Y+  G   E L L  +M   G  P+ VT++S++SA 
Sbjct: 352 ELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSAC 411

Query: 204 TKLRDLEMGKNLHLF-LEESTMKISGS---------LLNYLVDMYFKCGKIGEAQKLLGR 253
             L     G  +H + L+   + +            + N L+DMY KC     A+ +   
Sbjct: 412 ASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDD 471

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER--NLISWTLMISGMLNQDAEFKY 311
             ++E +VV WT ++ G+ +  + ++A +LF EM+     +      IS +L        
Sbjct: 472 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCIL-------- 523

Query: 312 KSCASIGALYHGIWVHVYIKKNQ-----------ISID------NIELAYDLFSEISEKN 354
            +CA + A+  G  +H Y+ ++              ID      +++ A  +F  +S+K+
Sbjct: 524 MACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKS 583

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              WTS++  Y M G   +A+D+F +M + G  PD +TF+ +L ACSH G+VD+G  +  
Sbjct: 584 AISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFD 643

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
             S  Y + P+ +HY C +DLL R+G L+++   +  MP+ P   +W +LL ACR H NV
Sbjct: 644 SMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNV 703

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           +LAEHA   L E +  NDG++ L++NIYA AGR  D++RIR  ++  G+KK+ G S ++ 
Sbjct: 704 ELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQG 763

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHR 578
                 F  GD  +P S +IY +L  +   ++  G + ET+               ++H 
Sbjct: 764 QKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHS 823

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LA+A+GL++TS    IRI  NLR+CGDCHS     S++ + EIV+RD  RFH F+ G 
Sbjct: 824 EKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGS 883

Query: 639 CSCRDYW 645
           CSC  YW
Sbjct: 884 CSCGGYW 890



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 177/415 (42%), Gaps = 73/415 (17%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR---DVISWNTMISCYTSMGM 173
           NG+   VF I   LV    + ++CG L+E   +FD++  R   DVISWN+++S +     
Sbjct: 184 NGFESNVF-ICNALVA---MYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 239

Query: 174 YREGLGLLSKMG------AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
               L L SKM             D +++V+++ A   L+ +   K +H     +     
Sbjct: 240 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 299

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             + N L+D Y KCG +  A K+    E    DVV W  +V+GY +S   + A  LF  M
Sbjct: 300 VFVGNALIDAYAKCGLMENAVKVFNMMEFK--DVVSWNAMVAGYSQSGNFEAAFELFKNM 357

Query: 288 VERNL----ISWTLMISGMLNQDAEFK-----------------------YKSCASIGAL 320
            + N+    ++WT +I+G   +    +                         +CAS+GA 
Sbjct: 358 RKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAF 417

Query: 321 YHGIWVHVYIKKN-QISIDN------------------------IELAYDLFSEIS--EK 353
             G  +H Y  KN  +++DN                         + A  +F +I   E+
Sbjct: 418 SQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEER 477

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           NV  WT +I  +A  G +  A+ LF+EM  E  G  P+  T   +L AC+H   +  G  
Sbjct: 478 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ 537

Query: 412 FLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             +   R +  +        C++D+  + G ++ + +   SM     +S W+S++
Sbjct: 538 IHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMM 591



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 61/325 (18%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG       + +++     + WN +I  +   G     + +  +M   G  PD  T+  +
Sbjct: 102 CGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHV 161

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A  +L     G   H  +  +  + +  + N LV MY +CG + EA  +      DE+
Sbjct: 162 LKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF-----DEI 216

Query: 260 ------DVVLWTTLVSGYVKSNERDEARRLFDEMV---------ER-NLISWTLMISGML 303
                 DV+ W ++VS +VKS+    A  LF +M          ER ++IS   ++    
Sbjct: 217 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 276

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIK-------------KNQISIDNI---------- 340
           +  A  + K      A+ +G +  V++              +N + + N+          
Sbjct: 277 SLKAVPQTKEVHG-NAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 335

Query: 341 ------------ELAYDLFSEISEKNVYL----WTSVIAAYAMAGHAQKAIDLFLEMEET 384
                       E A++LF  + ++N+ L    WT+VIA Y+  G + +A++LF +M  +
Sbjct: 336 AMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFS 395

Query: 385 GTKPDQVTFIALLSACSHGGLVDEG 409
           G+ P+ VT I++LSAC+  G   +G
Sbjct: 396 GSLPNCVTIISVLSACASLGAFSQG 420



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 116/283 (40%), Gaps = 27/283 (9%)

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           SL   +V  Y  CG    A  +L R  +     V W  L+  ++K    D A  +   M+
Sbjct: 90  SLGTGVVASYLACGATDYALLVLER--VTPSPAVWWNLLIREHIKQGRLDSAINVSCRML 147

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV------HVYIKKNQISI----D 338
                     +  +L    E     C   G+ +HG+        +V+I    +++     
Sbjct: 148 RAGTRPDHFTLPHVLKACGELPSYRC---GSAFHGLICCNGFESNVFICNALVAMYSRCG 204

Query: 339 NIELAYDLFSEISEK---NVYLWTSVIAAYAMAGHAQKAIDLFLEM------EETGTKPD 389
           ++E A  +F EI+++   +V  W S+++A+  + +A  A+DLF +M      + T  + D
Sbjct: 205 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 264

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            ++ + +L AC     V +  +      R     P +     ++D   + G +E +    
Sbjct: 265 IISIVNILPACGSLKAVPQTKEVHGNAIR-NGTFPDVFVGNALIDAYAKCGLMENAVKVF 323

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL-TETDPLN 491
             M    DV  W++++       N + A   FK++  E  PL+
Sbjct: 324 NMMEF-KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLD 365


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/541 (34%), Positives = 293/541 (54%), Gaps = 48/541 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++    +FD +P ++ +SWN MI  Y   G  RE L L ++M  EGV   +V++++
Sbjct: 208 KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA 267

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A  +L  L+ G  +H  L    +  + S++N L+ MY KC ++  A  +    E+D 
Sbjct: 268 ALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFD--ELDR 325

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
              V W  ++ G  ++   ++A RLF  M   N+   +  +  ++         + A I 
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVI--------PALADIS 377

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
                 W+H Y  +  +  D                + +A  LF+   E++V  W ++I 
Sbjct: 378 DPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIH 437

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y   G  + A++LF EM+  G  P++ TF+++LSACSH GLVDEG ++ +     Y ++
Sbjct: 438 GYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLE 497

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P M+HYG MVDLLGRAG L+E+  FI  MP+ P +S++ ++L AC+ H+NV+LAE + + 
Sbjct: 498 PGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQK 557

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E  P     HVLLANIYA A    D++R+R  +   GL+K  G+S+I+    +H F S
Sbjct: 558 IFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYS 617

Query: 544 GDIFNPHSEEIYLML-------------------NEIEMTLQQQGLQETSLQHRERLAVA 584
           G   +  ++EIY  L                   +++E  ++ Q L      H E+LA+A
Sbjct: 618 GSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLN----THSEKLAIA 673

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI T+  TTI+I  NLR+C DCH+  K+ S V  REI++RD  RFH F+ G+CSC DY
Sbjct: 674 FGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDY 733

Query: 645 W 645
           W
Sbjct: 734 W 734



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 151/329 (45%), Gaps = 38/329 (11%)

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR---------TVLLN---KCGKLKEV 146
           G  P ++ + S+++     G      A++  L  R         T L N   KC +  + 
Sbjct: 54  GAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADA 113

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTK 205
            ++FD++P RD ++WN +++ Y   G+ R  + ++ +M  E G  PD +T+VS++ A   
Sbjct: 114 RRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACAN 173

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
            R L   +  H F   S ++   ++   ++D Y KCG I  A+ +         + V W 
Sbjct: 174 ARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK--NSVSWN 231

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
            ++ GY ++ +  EA  LF+ MVE  +    + +   L        ++C  +G L  G+ 
Sbjct: 232 AMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL--------QACGELGCLDEGMR 283

Query: 326 VHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           VH  + +    + +S+ N           ++LA  +F E+  +    W ++I   A  G 
Sbjct: 284 VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGC 343

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           ++ A+ LF  M+    KPD  T ++++ A
Sbjct: 344 SEDAVRLFTRMQLENVKPDSFTLVSVIPA 372



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 104/274 (37%), Gaps = 49/274 (17%)

Query: 61  HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP 120
           H+  I + L     ++T + +     GD+  A+ +           WN++I+    NG  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 121 QEVFAIYLYLVTRTV--------------------------------------------- 135
           +E  A++  +V   V                                             
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 136 --LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
             + +KC ++     +FD+L  R  +SWN MI      G   + + L ++M  E V PD 
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS 363

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T+VS+I A   + D    + +H +     +     +L  L+DMY KCG++  A+ L   
Sbjct: 364 FTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
               E  V+ W  ++ GY        A  LF+EM
Sbjct: 424 AR--ERHVITWNAMIHGYGSHGFGKAAVELFEEM 455



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 96/245 (39%), Gaps = 18/245 (7%)

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L     M + G  P   T  SL+       DL  G+ +H  L    +         L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER------ 290
           MY KC +  +A+++  R  +   D V W  LV+GY     R+   R+  EMV R      
Sbjct: 103 MYAKCRRPADARRVFDRMPVR--DRVAWNALVAGYA----RNGLARMAMEMVVRMQEEEG 156

Query: 291 ------NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAY 344
                  L+S     +      A  +  + A    L   + V   I        +I  A 
Sbjct: 157 ERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAAR 216

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F  +  KN   W ++I  YA  G +++A+ LF  M E G     V+ +A L AC   G
Sbjct: 217 VVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELG 276

Query: 405 LVDEG 409
            +DEG
Sbjct: 277 CLDEG 281


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 177/526 (33%), Positives = 298/526 (56%), Gaps = 21/526 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVIS--WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           KCG + +  ++F++ P    +S  +N +IS YT+     +   +  +M   GVS D VTM
Sbjct: 100 KCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTM 159

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           + L+   T    L +G++LH    +  +    ++LN  + MY KCG +   ++L    E+
Sbjct: 160 LGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFD--EM 217

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA- 315
               ++ W  ++SGY ++    +   L+++M    +      +  +L+  A    K    
Sbjct: 218 PVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGH 277

Query: 316 SIGALY--HGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
            +G L   +G   +V++    IS+     N+  A  +F  +  K++  WT++I  Y M G
Sbjct: 278 EVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHG 337

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
             +  + LF +M + G +PD   F+ +LSACSH GL D+G +      R Y ++P  +HY
Sbjct: 338 MGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHY 397

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
            C+VDLLGRAG L+E+  FI SMP+ PD ++W +LL AC+ H+NV +AE AF  + E +P
Sbjct: 398 SCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEP 457

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            N G +VL++NIY+ +   + + RIR+ +R+   +K+ GYS +E  G VH F +GD  + 
Sbjct: 458 NNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHE 517

Query: 550 HSEEIYLMLNEIEMTLQQ----------QGLQETSLQHRERLAVAFGLISTSEKTTIRIV 599
            +EE++ ML+E+E ++ +          + +  T+ +H ERLA+AFG++++   T I ++
Sbjct: 518 QTEEVHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVI 577

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C DCH F+K  S++ +R+ V+RD  RFH F+ G CSC+DYW
Sbjct: 578 KNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 150/344 (43%), Gaps = 15/344 (4%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           WN  +       ++ E + L   M   G SPD  +   ++ +   L     G+ LH  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           +   +    +L  L+ MY KCG + +A+K+           V +  L+SGY  +++  +A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV------HVYIKKNQ 334
             +F  M E  +   ++ + G++      +Y     +G   HG  V       V +  + 
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEY---LWLGRSLHGQCVKGGLDSEVAVLNSF 197

Query: 335 ISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           I++     ++E    LF E+  K +  W +VI+ Y+  G A   ++L+ +M+ +G  PD 
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
            T +++LS+C+H G    G++ + K        P +      + +  R G+L ++     
Sbjct: 258 FTLVSVLSSCAHLGAKKIGHE-VGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFD 316

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
            MP+   VS W++++     H   ++    F  + +     DGA
Sbjct: 317 IMPVKSLVS-WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGA 359


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/541 (34%), Positives = 293/541 (54%), Gaps = 48/541 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++    +FD +P ++ +SWN MI  Y   G  RE L L ++M  EGV   +V++++
Sbjct: 208 KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA 267

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A  +L  L+ G  +H  L    +  + S++N L+ MY KC ++  A  +    E+D 
Sbjct: 268 ALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFD--ELDR 325

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
              V W  ++ G  ++   ++A RLF  M   N+   +  +  ++         + A I 
Sbjct: 326 RTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVI--------PALADIS 377

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
                 W+H Y  +  +  D                + +A  LF+   E++V  W ++I 
Sbjct: 378 DPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIH 437

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y   G  + A++LF EM+  G  P++ TF+++LSACSH GLVDEG ++ +     Y ++
Sbjct: 438 GYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLE 497

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P M+HYG MVDLLGRAG L+E+  FI  MP+ P +S++ ++L AC+ H+NV+LAE + + 
Sbjct: 498 PGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQK 557

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E  P     HVLLANIYA A    D++R+R  +   GL+K  G+S+I+    +H F S
Sbjct: 558 IFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYS 617

Query: 544 GDIFNPHSEEIYLML-------------------NEIEMTLQQQGLQETSLQHRERLAVA 584
           G   +  ++EIY  L                   +++E  ++ Q L      H E+LA+A
Sbjct: 618 GSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLN----THSEKLAIA 673

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI T+  TTI+I  NLR+C DCH+  K+ S V  REI++RD  RFH F+ G+CSC DY
Sbjct: 674 FGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDY 733

Query: 645 W 645
           W
Sbjct: 734 W 734



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 151/329 (45%), Gaps = 38/329 (11%)

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR---------TVLLN---KCGKLKEV 146
           G  P ++ + S+++     G      A++  L  R         T L N   KC +  + 
Sbjct: 54  GAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADA 113

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTK 205
            ++FD++P RD ++WN +++ Y   G+ R  + ++ +M  E G  PD +T+VS++ A   
Sbjct: 114 RRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACAN 173

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
            R L   +  H F   S ++   ++   ++D Y KCG I  A+ +         + V W 
Sbjct: 174 ARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTK--NSVSWN 231

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
            ++ GY ++ +  EA  LF+ MVE  +    + +   L        ++C  +G L  G+ 
Sbjct: 232 AMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL--------QACGELGCLDEGMR 283

Query: 326 VHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           VH  + +    + +S+ N           ++LA  +F E+  +    W ++I   A  G 
Sbjct: 284 VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGC 343

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           ++ A+ LF  M+    KPD  T ++++ A
Sbjct: 344 SEDAVRLFTRMQLENVKPDSFTLVSVIPA 372



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 104/274 (37%), Gaps = 49/274 (17%)

Query: 61  HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP 120
           H+  I + L     ++T + +     GD+  A+ +           WN++I+    NG  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 121 QEVFAIYLYLVTRTV--------------------------------------------- 135
           +E  A++  +V   V                                             
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 136 --LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
             + +KC ++     +FD+L  R  +SWN MI      G   + + L ++M  E V PD 
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS 363

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T+VS+I A   + D    + +H +     +     +L  L+DMY KCG++  A+ L   
Sbjct: 364 FTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
               E  V+ W  ++ GY        A  LF+EM
Sbjct: 424 AR--ERHVITWNAMIHGYGSHGFGKAAVELFEEM 455



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 96/245 (39%), Gaps = 18/245 (7%)

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L     M + G  P   T  SL+       DL  G+ +H  L    +         L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER------ 290
           MY KC +  +A+++  R  +   D V W  LV+GY     R+   R+  EMV R      
Sbjct: 103 MYAKCRRPADARRVFDRMPVR--DRVAWNALVAGYA----RNGLARMAMEMVVRMQEEEG 156

Query: 291 ------NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAY 344
                  L+S     +      A  +  + A    L   + V   I        +I  A 
Sbjct: 157 ERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAAR 216

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F  +  KN   W ++I  YA  G +++A+ LF  M E G     V+ +A L AC   G
Sbjct: 217 VVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELG 276

Query: 405 LVDEG 409
            +DEG
Sbjct: 277 CLDEG 281


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 297/559 (53%), Gaps = 60/559 (10%)

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
           +L     L    P+   + + + I  ++S G++   L LLS+M   G+ P   T+ S + 
Sbjct: 82  RLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLP 141

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
           A      L +G+ LH +  +  +     +   L+ MY + G    A+ L    E+ +  V
Sbjct: 142 A---CHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFD--EMPDPHV 196

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQ 305
           V  T +++ Y K    D+AR LFD M  ++ I W  MI G                ML  
Sbjct: 197 VPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRS 256

Query: 306 DAE-------FKYKSCASIGALYHGIWVHVYIKKNQ----------------ISIDNIEL 342
             +           + A +G    G W+H Y+K ++                    ++E 
Sbjct: 257 GVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLED 316

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  +F+ I +K++ +W ++I  YAM G ++KA+++F ++   G  P  +TFI LL+ACSH
Sbjct: 317 AVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSH 376

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GLVDEG+ F       Y I PK++HYGCMVDLLGRAG +EE+ + + SM I PD  +W 
Sbjct: 377 SGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWV 436

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           SLL ACR H+N+ L +    +L      N G ++LL+NIYA  G  ++++R+R  ++  G
Sbjct: 437 SLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASG 496

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG------------- 569
           ++K+ G S IE G  V++F +GD+ +P ++EIY ML ++   +++QG             
Sbjct: 497 IQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLD 556

Query: 570 --LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
              +E +L  H E+LAVAFGLIST+   TI+IV NLR C DCH+ +K+ S++  R+IV R
Sbjct: 557 EVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFR 616

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F  G C+C DYW
Sbjct: 617 DRNRFHHFVDGSCTCGDYW 635



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 153/355 (43%), Gaps = 58/355 (16%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           +C  +     +H++     L  D  ++T +       GD   A+ +  +  +P +     
Sbjct: 142 ACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHV----- 196

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMIS 166
                                V  T +L    K G L +  +LFD +P++D I WN MI 
Sbjct: 197 ---------------------VPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMID 235

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES-TMK 225
            YT  G   E L L   M   GV PDEV ++  +SA  +L   E G+ LH +++ S  ++
Sbjct: 236 GYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQ 295

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           ++  +   L+DMY KCG + +A  +     I + D+V+W  +++GY    +  +A  +F 
Sbjct: 296 LNARVGTALIDMYCKCGSLEDAVSVFN--SIGDKDIVVWNAMINGYAMHGDSRKALEMFS 353

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345
           ++  + L    +   G+LN        +C+  G +  G   H + +       ++E  Y 
Sbjct: 354 QLRSQGLWPTDITFIGLLN--------ACSHSGLVDEG---HQFFQ-------SMEEEYA 395

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           +  +I       +  ++     AG  ++A  L   M      PD V +++LL+AC
Sbjct: 396 IVPKIEH-----YGCMVDLLGRAGLIEEAFHLVQSMT---IAPDTVMWVSLLAAC 442


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 297/559 (53%), Gaps = 60/559 (10%)

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
           +L     L    P+   + + + I  ++S G++   L LLS+M   G+ P   T+ S + 
Sbjct: 81  RLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLP 140

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
           A      L +G+ LH +  +  +     +   L+ MY + G    A+ L    E+ +  V
Sbjct: 141 A---CHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFD--EMPDPHV 195

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQ 305
           V  T +++ Y K    D+AR LFD M  ++ I W  MI G                ML  
Sbjct: 196 VPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRS 255

Query: 306 DAE-------FKYKSCASIGALYHGIWVHVYIKKNQ----------------ISIDNIEL 342
             +           + A +G    G W+H Y+K ++                    ++E 
Sbjct: 256 GVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLED 315

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  +F+ I +K++ +W ++I  YAM G ++KA+++F ++   G  P  +TFI LL+ACSH
Sbjct: 316 AVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSH 375

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GLVDEG+ F       Y I PK++HYGCMVDLLGRAG +EE+ + + SM I PD  +W 
Sbjct: 376 SGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWV 435

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           SLL ACR H+N+ L +    +L      N G ++LL+NIYA  G  ++++R+R  ++  G
Sbjct: 436 SLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASG 495

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG------------- 569
           ++K+ G S IE G  V++F +GD+ +P ++EIY ML ++   +++QG             
Sbjct: 496 IQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLD 555

Query: 570 --LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
              +E +L  H E+LAVAFGLIST+   TI+IV NLR C DCH+ +K+ S++  R+IV R
Sbjct: 556 EVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFR 615

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F  G C+C DYW
Sbjct: 616 DRNRFHHFVDGSCTCGDYW 634



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 153/355 (43%), Gaps = 58/355 (16%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           +C  +     +H++     L  D  ++T +       GD   A+ +  +  +P +     
Sbjct: 141 ACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHV----- 195

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMIS 166
                                V  T +L    K G L +  +LFD +P++D I WN MI 
Sbjct: 196 ---------------------VPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMID 234

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES-TMK 225
            YT  G   E L L   M   GV PDEV ++  +SA  +L   E G+ LH +++ S  ++
Sbjct: 235 GYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQ 294

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           ++  +   L+DMY KCG + +A  +     I + D+V+W  +++GY    +  +A  +F 
Sbjct: 295 LNARVGTALIDMYCKCGSLEDAVSVFN--SIGDKDIVVWNAMINGYAMHGDSRKALEMFS 352

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345
           ++  + L    +   G+LN        +C+  G +  G   H + +       ++E  Y 
Sbjct: 353 QLRSQGLWPTDITFIGLLN--------ACSHSGLVDEG---HQFFQ-------SMEEEYA 394

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           +  +I       +  ++     AG  ++A  L   M      PD V +++LL+AC
Sbjct: 395 IVPKIEH-----YGCMVDLLGRAGLIEEAFHLVQSMT---IAPDTVMWVSLLAAC 441


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 288/554 (51%), Gaps = 59/554 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPDEVTMVSLISARTK 205
           Q+ D+     + + N+MI  Y+      +     +K+    + +SPD  T   L+    +
Sbjct: 64  QILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ 123

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
               E G  +H  L +   +    + + L+ MY +   +    ++     + + D+V  T
Sbjct: 124 -SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVF--ESVQKPDLVCQT 180

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE------FKY-------- 311
           T+VS   K  +   AR LFD M +R+ +SW  MI+G   +         FK         
Sbjct: 181 TMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKV 240

Query: 312 ---------KSCASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLF 347
                     +C  +GAL  G W H YI+KN+I +                N++ A  +F
Sbjct: 241 NEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVF 300

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
            E++EKNVY W++ I   AM G+ QK ++LF  M+  G  P+++TFI++L  CS  G VD
Sbjct: 301 WEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVD 360

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG        R + I+P+++HYGCMVDL GRAG LEE+ NFI +MP+ P    W +LL A
Sbjct: 361 EGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNA 420

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR ++N++L E A + L E +  N GA+V L+NIYA  G  D +S +R  ++  G+ K  
Sbjct: 421 CRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLP 480

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
           G S++E  G VH+F SGD  +P  + I  M  EI   L+  G                 +
Sbjct: 481 GCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKE 540

Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
           +   +H E++A+AFGL S  E   IRIV NLRIC DCH   K+ S+++ REI++RD  RF
Sbjct: 541 DALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRF 600

Query: 632 HRFQGGQCSCRDYW 645
           H F+ G+CSC+D+W
Sbjct: 601 HHFKDGECSCKDFW 614


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 177/461 (38%), Positives = 259/461 (56%), Gaps = 42/461 (9%)

Query: 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
           L L  +   +  S  N L+  Y + G++ +A+ L    E+   + V W+ +V+GYV++ +
Sbjct: 132 LLLLRTAAAVDASTFNTLITAYARAGRLADARALFD--EMPARNAVSWSAMVNGYVQAGD 189

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
             EA R+F  M   ++     ++ G+L         +CA  GAL  G WVH Y+K + I 
Sbjct: 190 GREALRIFARMQAEDVRPDDTVLVGVL--------AACAQHGALEQGKWVHGYLKAHGIK 241

Query: 337 ID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
           I+                ++LA D+F  +  KNV  WT++I   AM G   +A+ LF +M
Sbjct: 242 INLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQM 301

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
           E +G +PD + FI +L AC+H GLVD+G +      R Y IKPK++HYGCMVDLL R G 
Sbjct: 302 ESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGF 361

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           L E+   I  MP+ PD  IW +L+  CR H+NV+ AE+  KH    +P   GA+VLL+NI
Sbjct: 362 LYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNI 421

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           YA +GR      IR  +R+ G+ K  G S +E  G +H+F  GD+ +P  ++I     EI
Sbjct: 422 YAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEI 481

Query: 562 EMTLQ-QQG----LQETSL------------QHRERLAVAFGLISTSEKTTIRIVNNLRI 604
           +  ++ ++G    ++E  L            +H E+LA+AF LIS S+   IRI  NLR+
Sbjct: 482 DTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRV 541

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           C DCH   K+ S+VY REIV+RD  RFH F+ G CSC+DYW
Sbjct: 542 CHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 126/286 (44%), Gaps = 35/286 (12%)

Query: 4   RSVEPQLTETIFEPKLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFE-RIHS 62
           RS  P L   ++   L+R GL+P         +  P  L  + +  +          +H+
Sbjct: 49  RSARPHLALPLYA-HLLRAGLLPT-------PHTLPSLLKSMALSPAVPGAAVLALTVHT 100

Query: 63  HLITTNLMRDPQISTQVFEFLV-FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQ 121
           H +   L R   +S  +      F G L     ++R     +   +N+     LI  Y  
Sbjct: 101 HAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNT-----LITAYA- 154

Query: 122 EVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                            + G+L +   LFD++P R+ +SW+ M++ Y   G  RE L + 
Sbjct: 155 -----------------RAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIF 197

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
           ++M AE V PD+  +V +++A  +   LE GK +H +L+   +KI+      LVDMY KC
Sbjct: 198 ARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKC 257

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           G++  A  +  R +    +V+ WTT++ G        EA  LF +M
Sbjct: 258 GEVQLAMDVFERMQYK--NVLAWTTMIKGLAMHGRGSEAVMLFAQM 301



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 85/162 (52%), Gaps = 4/162 (2%)

Query: 112 ENQLINGY-PQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           + + ++GY       I L+  T  V + +KCG+++    +F+++  ++V++W TMI    
Sbjct: 227 QGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLA 286

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL-HLFLEESTMKISG 228
             G   E + L ++M + G+ PD++  + ++ A T    ++ G+ L    + +  +K   
Sbjct: 287 MHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKI 346

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
                +VD+  + G + EA++++ +  + E D ++W  L++G
Sbjct: 347 EHYGCMVDLLARNGFLYEAKEMIQKMPM-EPDALIWGALMAG 387


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 205/568 (36%), Positives = 297/568 (52%), Gaps = 66/568 (11%)

Query: 140 CGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEG--VSPDEVTM 196
           C  L     +FD+ P+    I WN MI  Y+     +E L L  +M A G   S D+ T 
Sbjct: 100 CRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTF 159

Query: 197 VSLISARTKLRDLE-MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             + +A ++   L   G+N+H  + +   +    + N LV+MY    ++ +A+++    E
Sbjct: 160 TFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFD--E 217

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-------------- 301
           + + DV+ WT++V GY    E   AR LFD M  RN +SW +M++G              
Sbjct: 218 MPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCF 277

Query: 302 --MLNQDAEFK---------YKSCASIGALYHGIWVHVYIKKNQISIDN----------- 339
             ML  D E K           +CA +GAL  G W+HVYI KN+I + +           
Sbjct: 278 NDMLCHD-EVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYA 336

Query: 340 ----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
               I+ A  +F  + ++++  WTS+I+  +M G   + +  F EM   G KPD +T + 
Sbjct: 337 KCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLG 396

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           +L+ CSH GLV+EG         ++ I PK++HYGC++DLLGRAG LE +   I SMP+ 
Sbjct: 397 VLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPME 456

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP-LNDGAHVLLANIYAKAGRLDDMSRI 514
           PDV  W +LL ACR H +V L E    H+ E  P  + G +VLL+N+YA  G+ + ++++
Sbjct: 457 PDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKV 516

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE-------------- 560
           R  +   G +   G S IE  G VH+F + D  +P   EI   LNE              
Sbjct: 517 RKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPS 576

Query: 561 ---IEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
              +   L ++  ++    H E+LAVAFGL+ST E  TIRI  NLR C DCHS MK  S 
Sbjct: 577 TKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQEG-TIRITKNLRTCEDCHSAMKTISL 635

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           V+NREIV+RD  RFH F+ G CSC DYW
Sbjct: 636 VFNREIVVRDRSRFHTFRYGNCSCTDYW 663


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 207/686 (30%), Positives = 330/686 (48%), Gaps = 83/686 (12%)

Query: 39  PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P +     V ++CS++ +      +H H     L  D  +ST + +         +A  +
Sbjct: 127 PNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATV 186

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL------------------------- 130
            R+    ++  WN+++    ++G   +  A  L +                         
Sbjct: 187 FRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALS 246

Query: 131 ----------------------VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMI 165
                                 +  T LL+   KCG L    ++F+ +  R+ ++W+ ++
Sbjct: 247 QGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALV 306

Query: 166 SCYTSMGMYREGLGLLSKMGAEGV---SPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
             +   G   E   L   M A+G+   SP  V   S + A   L DL +GK LH  L +S
Sbjct: 307 GGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKS 364

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            +    +  N L+ MY K G I +A  L  +  +   D V ++ LVSGYV++ + DEA R
Sbjct: 365 GLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVK--DTVSYSALVSGYVQNGKADEAFR 422

Query: 283 LFDEMVERNL---ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI-- 337
           +F +M   N+   ++  + +    +  A  ++  C     +  GI     I    I +  
Sbjct: 423 VFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYA 482

Query: 338 --DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
               I+L+  +F  +  +++  W ++IA Y + G  ++A  LFL+M+    +PD VTFI 
Sbjct: 483 KCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFIC 542

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           L+SACSH GLV EG  +    +  Y I P+M+HY  MVDLL R G L+E+  FI  MP+ 
Sbjct: 543 LISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLK 602

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
            DV +W +LL ACR H+N+ L +     + +  P   G  VLL+NI++ AGR D+ + +R
Sbjct: 603 ADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVR 662

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG------ 569
           +  ++ G KK  G S IE  G +H F  GD  +  S EIY  L+ I + + + G      
Sbjct: 663 IIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTS 722

Query: 570 --LQETS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVY 619
             LQ+          L H E+LA+AFG+++ SE  TI +  NLR+CGDCH+ +K  + V 
Sbjct: 723 FVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVR 782

Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
            R I++RD  RFH F+ GQCSC D+W
Sbjct: 783 KRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/433 (20%), Positives = 160/433 (36%), Gaps = 83/433 (19%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG L     LFD++P   +  +N +I  Y+  G         S        P+  T   +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A + L DL   + +H     + +     +   LVD+Y KC     A  +  R  +   
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRR--MPAR 193

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS--------GMLNQD---AE 308
           DVV W  +++GY    +  +       M + +  + + +++        G L+Q      
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHA 253

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
           +  ++C S+     G+ V   +        ++  A  +F  ++ +N   W++++  + + 
Sbjct: 254 YSVRAC-SLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLC 312

Query: 369 GHAQKAIDLFLEM------------------------------------EETGTKPDQVT 392
           G   +A  LF +M                                     ++G   D   
Sbjct: 313 GRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 393 FIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
             +LLS  +  GL+D+    +D +  K  V         Y  +V    + G  +E+    
Sbjct: 373 GNSLLSMYAKAGLIDQATTLFDQMVVKDTVS--------YSALVSGYVQNGKADEAFRVF 424

Query: 450 TSMP---IPPDVSIWSSLLRAC---------RC-HQNVKLAEHAFKHLTETDPLNDGAHV 496
             M    + PDV+   SL+ AC         +C H +V +   A    +ET   N     
Sbjct: 425 RKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIA----SETSICN----- 475

Query: 497 LLANIYAKAGRLD 509
            L ++YAK GR+D
Sbjct: 476 ALIDMYAKCGRID 488


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 208/650 (32%), Positives = 329/650 (50%), Gaps = 102/650 (15%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG---DLGYAQQIIRQGD 100
           V+ V   C S+ E  +IH+ +I TNL+      +++  F   +G    L YA  +  +  
Sbjct: 9   VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 101 EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVIS 160
            P     NS I   LI G+                                  P   +I 
Sbjct: 69  HP-----NSFIFFALIKGFSDT-----------------------------SNPVESLIL 94

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           +  M+SC      Y  G+              E ++ S++ A  KL   + G+ +H  + 
Sbjct: 95  YARMLSCLN----YSSGV--------------EFSIPSVLKACGKLLAFDEGRQVHGQVL 136

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           ++ +     + N +V MY   G+I  A+++  R  +   DVV W ++++GY+K+ E + A
Sbjct: 137 KTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR--MPNRDVVSWNSMIAGYLKAGEIELA 194

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYK-----------SCASIGALYHGIWVHVY 329
             LFDEM ER+L+S   MI G   +      +           + A +G +  G W+H Y
Sbjct: 195 SELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAY 254

Query: 330 IKKNQISIDN----------------IELAYDLFSEISEK-NVYLWTSVIAAYAMAGHAQ 372
           +  N+I + +                IE AY +F  IS + N+  W S+I+  A+ G A+
Sbjct: 255 VSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAR 314

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +A+D+F+EME    +P+++TF+ LLS CSHGGLV+EG  +       Y I P++QHYGCM
Sbjct: 315 EALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCM 374

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           +DL GRAG LE++   I +MP   D+  W ++L A   H ++++ + A     E  P + 
Sbjct: 375 IDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDS 434

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG-DIFNPHS 551
            ++VLL+NIYAKAGR DD+++IR+ +R  G+KK  G S +   G VH+F  G ++ + +S
Sbjct: 435 SSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYS 494

Query: 552 EEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTT 595
            ++   + E+   L+ QG +    Q                H E++A+AFGLI  ++   
Sbjct: 495 GQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAP 554

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I IV NLR+C DCH FMK+ S+VYNR+I++RD  RFH F+ G CSC +YW
Sbjct: 555 IHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 168/383 (43%), Gaps = 73/383 (19%)

Query: 40  VSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQII 96
           V   +  V ++C    + DE  ++H  ++ T+L  DP +   +    +  G++  A+++ 
Sbjct: 108 VEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVF 167

Query: 97  RQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR 156
            +    ++  WNS+I   L                       K G+++   +LFD++P R
Sbjct: 168 DRMPNRDVVSWNSMIAGYL-----------------------KAGEIELASELFDEMPER 204

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
           D++S N MI  Y      +E L L       G+ PD   +VS++SA   L  +E GK LH
Sbjct: 205 DLVSCNAMIDGYG-----KEMLSL-------GLRPDGPAIVSVLSAIADLGFVEEGKWLH 252

Query: 217 LFLEESTMKI-SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
            ++  + +++ SG + + L+DMY KCG I  A  +  R      ++  W +++SG     
Sbjct: 253 AYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVF-RSISHRRNIGDWNSMISGLAIHG 311

Query: 276 ERDEARRLFDEM----VERNLISWTLMIS----GMLNQDAEF-------KYKSCASIGAL 320
              EA  +F EM    +E N I++  ++S    G L ++ +F       KYK    I   
Sbjct: 312 LAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQ-- 369

Query: 321 YHGIWVHVYIKKNQIS-----IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           ++G  + ++ +  ++      I N+    DL +         W ++++A    GH +   
Sbjct: 370 HYGCMIDLFGRAGRLEDALGVIQNMPFEADLLA---------WKAILSASMKHGHIEIGK 420

Query: 376 DLFLEMEETGTKPDQVTFIALLS 398
              L   E    PD  +   LLS
Sbjct: 421 SAALRAIELA--PDDSSSYVLLS 441


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 189/607 (31%), Positives = 314/607 (51%), Gaps = 65/607 (10%)

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL--------LNKCGKLKEVC 147
           IR G  P++ + N++I+     G  +    ++  +  + V+         ++ G  +   
Sbjct: 299 IRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAF 358

Query: 148 QLFDKLPNR----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
           +LF  +       DV++W  +I+ Y+  G   E L L  +M   G  P+ VT++S++SA 
Sbjct: 359 ELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSAC 418

Query: 204 TKLRDLEMGKNLHLF-LEESTMKISGS---------LLNYLVDMYFKCGKIGEAQKLLGR 253
             L     G  +H + L+   + +            + N L+DMY KC     A+ +   
Sbjct: 419 ASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDD 478

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER--NLISWTLMISGMLNQDAEFKY 311
             ++E +VV WT ++ G+ +  + ++A +LF EM+     +      IS +L        
Sbjct: 479 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCIL-------- 530

Query: 312 KSCASIGALYHGIWVHVYIKKNQ-----------ISID------NIELAYDLFSEISEKN 354
            +CA + A+  G  +H Y+ ++              ID      +++ A  +F  +S+K+
Sbjct: 531 MACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKS 590

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              WTS++  Y M G   +A+D+F +M + G  PD +TF+ +L ACSH G+VD+G  +  
Sbjct: 591 AISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFD 650

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
             S  Y + P+ +HY C +DLL R+G L+++   +  MP+ P   +W +LL ACR H NV
Sbjct: 651 SMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNV 710

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           +LAEHA   L E +  NDG++ L++NIYA AGR  D++RIR  ++  G+KK+ G S ++ 
Sbjct: 711 ELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQG 770

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHR 578
                 F  GD  +P S +IY +L  +   ++  G + ET+               ++H 
Sbjct: 771 QKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHS 830

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LA+A+GL++TS    IRI  NLR+CGDCHS     S++ + EIV+RD  RFH F+ G 
Sbjct: 831 EKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGS 890

Query: 639 CSCRDYW 645
           CSC  YW
Sbjct: 891 CSCGGYW 897



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 177/415 (42%), Gaps = 73/415 (17%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR---DVISWNTMISCYTSMGM 173
           NG+   VF I   LV    + ++CG L+E   +FD++  R   DVISWN+++S +     
Sbjct: 191 NGFESNVF-ICNALVA---MYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 246

Query: 174 YREGLGLLSKMG------AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
               L L SKM             D +++V+++ A   L+ +   K +H     +     
Sbjct: 247 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 306

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             + N L+D Y KCG +  A K+    E    DVV W  +V+GY +S   + A  LF  M
Sbjct: 307 VFVGNALIDAYAKCGLMENAVKVFNMMEFK--DVVSWNAMVAGYSQSGNFEAAFELFKNM 364

Query: 288 VERNL----ISWTLMISGMLNQDAEFK-----------------------YKSCASIGAL 320
            + N+    ++WT +I+G   +    +                         +CAS+GA 
Sbjct: 365 RKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAF 424

Query: 321 YHGIWVHVYIKKN-QISIDN------------------------IELAYDLFSEIS--EK 353
             G  +H Y  KN  +++DN                         + A  +F +I   E+
Sbjct: 425 SQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEER 484

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           NV  WT +I  +A  G +  A+ LF+EM  E  G  P+  T   +L AC+H   +  G  
Sbjct: 485 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ 544

Query: 412 FLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             +   R +  +        C++D+  + G ++ + +   SM     +S W+S++
Sbjct: 545 IHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMM 598



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 61/325 (18%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG       + +++     + WN +I  +   G     + +  +M   G  PD  T+  +
Sbjct: 109 CGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHV 168

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A  +L     G   H  +  +  + +  + N LV MY +CG + EA  +      DE+
Sbjct: 169 LKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF-----DEI 223

Query: 260 ------DVVLWTTLVSGYVKSNERDEARRLFDEMV---------ER-NLISWTLMISGML 303
                 DV+ W ++VS +VKS+    A  LF +M          ER ++IS   ++    
Sbjct: 224 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 283

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIK-------------KNQISIDNI---------- 340
           +  A  + K      A+ +G +  V++              +N + + N+          
Sbjct: 284 SLKAVPQTKEVHG-NAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 342

Query: 341 ------------ELAYDLFSEISEKNVYL----WTSVIAAYAMAGHAQKAIDLFLEMEET 384
                       E A++LF  + ++N+ L    WT+VIA Y+  G + +A++LF +M  +
Sbjct: 343 AMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFS 402

Query: 385 GTKPDQVTFIALLSACSHGGLVDEG 409
           G+ P+ VT I++LSAC+  G   +G
Sbjct: 403 GSLPNCVTIISVLSACASLGAFSQG 427



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 116/283 (40%), Gaps = 27/283 (9%)

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           SL   +V  Y  CG    A  +L R  +     V W  L+  ++K    D A  +   M+
Sbjct: 97  SLGTGVVASYLACGATDYALLVLER--VTPSPAVWWNLLIREHIKQGRLDSAINVSCRML 154

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV------HVYIKKNQISI----D 338
                     +  +L    E     C   G+ +HG+        +V+I    +++     
Sbjct: 155 RAGTRPDHFTLPHVLKACGELPSYRC---GSAFHGLICCNGFESNVFICNALVAMYSRCG 211

Query: 339 NIELAYDLFSEISEK---NVYLWTSVIAAYAMAGHAQKAIDLFLEM------EETGTKPD 389
           ++E A  +F EI+++   +V  W S+++A+  + +A  A+DLF +M      + T  + D
Sbjct: 212 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 271

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            ++ + +L AC     V +  +      R     P +     ++D   + G +E +    
Sbjct: 272 IISIVNILPACGSLKAVPQTKEVHGNAIR-NGTFPDVFVGNALIDAYAKCGLMENAVKVF 330

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL-TETDPLN 491
             M    DV  W++++       N + A   FK++  E  PL+
Sbjct: 331 NMMEF-KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLD 372


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 208/690 (30%), Positives = 331/690 (47%), Gaps = 95/690 (13%)

Query: 39  PVSLDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + V  +  +C+S   + + E++HS++I   +  D  +   + +  V   D+  A ++
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEM 371

Query: 96  IRQGDEPEIKIWN-------------------------SIIENQLINGYP---------- 120
                   + +WN                          +I NQ    YP          
Sbjct: 372 FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFT--YPSILRTCTSVG 429

Query: 121 -------------QEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
                        +  F   +Y+ +  + +  K GKL     +   L   DV+SW  +IS
Sbjct: 430 ALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALIS 489

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            Y    ++ E L    +M   G+  D +   S ISA   ++ L  G+ +H     S    
Sbjct: 490 GYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSE 549

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
             S+ N LV +Y +CG+I EA   L   +ID  D + W  L+SG+ +S   ++A ++F +
Sbjct: 550 DLSIGNALVSLYARCGRIKEA--YLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQ 607

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------- 338
           M    L +        ++        + A+I  +  G  +H  I K     D        
Sbjct: 608 MNRAKLEASFFTFGSAVS--------AAANIANIKQGKQIHAMIIKRGFDSDIEVSNALI 659

Query: 339 -------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                  +IE A   F E+ EKN   W ++I  Y+  G+  +A++LF +M++ G  P+ V
Sbjct: 660 TFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHV 719

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           TF+ +LSACSH GLV +G  +    S+ + + PK  HY C+VDL+ RAG L  +  FI  
Sbjct: 720 TFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEE 779

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           MPI PD +IW +LL AC  H+NV++ E A +HL E +P +   +VLL+N+YA +G+ D  
Sbjct: 780 MPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCR 839

Query: 512 SRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMT------- 564
            + R  +R+ G+KK+ G S IE    VH F  GD  +P +++IY  L E+          
Sbjct: 840 DQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYF 899

Query: 565 ---------LQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
                    ++Q+    T   H E+LA+ FGL+S S+   I ++ NLR+C DCHS++K  
Sbjct: 900 QDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFV 959

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S++ NR I++RD  RFH F+GG CSC+DYW
Sbjct: 960 SKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 170/375 (45%), Gaps = 36/375 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G +    ++FD L  +D +SW  MIS ++  G   E + L  +M   G+ P    
Sbjct: 156 LYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYV 215

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++S  TK++  ++G+ LH  + +    +   + N LV +Y +      A+K+  +  
Sbjct: 216 FSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSK-- 273

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D V + +L+SG  +    D A  LF +M    L    + ++ +L+        +CA
Sbjct: 274 MQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLS--------ACA 325

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           S GAL  G  +H Y+ K  IS D               +I+ A+++F     +NV LW  
Sbjct: 326 SNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNV 385

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ A+    +  ++  +F +M+  G  P+Q T+ ++L  C+  G +D G       ++V 
Sbjct: 386 MLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQI---HTQVI 442

Query: 421 NIKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
               +   Y C  ++D+  + G L ++A+ I       DV  W++L+     H    L  
Sbjct: 443 KTGFQFNVYVCSVLIDMYAKHGKL-DTAHVILRTLTEDDVVSWTALISGYAQHN---LFA 498

Query: 479 HAFKHLTETDPLNDG 493
            A KH  E   LN G
Sbjct: 499 EALKHFKEM--LNRG 511



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 179/412 (43%), Gaps = 46/412 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L  V ++F+ +PNR V SW+ +IS +    M    L L S M  E VSP E++  S++
Sbjct: 59  GDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVL 118

Query: 201 SARTKLR-DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            A +  R  +   + +H  +    +  S  + N L+ +Y K G I  A+K+     +   
Sbjct: 119 RACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDN--LCTK 176

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-YKSCASIG 318
           D V W  ++SG+ ++   +EA  LF EM    +     + S +L+   + K +     + 
Sbjct: 177 DSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLH 236

Query: 319 ALY--HGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
           AL   +G  +  Y+    +++     N   A  +FS++  K+   + S+I+  A  G + 
Sbjct: 237 ALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSD 296

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
            A++LF +M+    KPD VT  +LLSAC+  G + +G    S   +   I   M   G +
Sbjct: 297 GALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKA-GISSDMIVEGAL 355

Query: 433 VDL-------------------------------LGRAGHLEESANFITSMPIP---PDV 458
           +DL                                G+  +L ES      M I    P+ 
Sbjct: 356 LDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQ 415

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLD 509
             + S+LR C     + L E     + +T    N     +L ++YAK G+LD
Sbjct: 416 FTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLD 467


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 211/650 (32%), Positives = 325/650 (50%), Gaps = 89/650 (13%)

Query: 75  ISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---- 130
           + + +  FLV  G L  AQ++     E ++  WNSII   +  G   E   ++L +    
Sbjct: 182 VGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGG 241

Query: 131 -----VTRTVLLNKCGK--LKEV--CQ--------------------------------- 148
                VT   LL  CG+  LK+V  C                                  
Sbjct: 242 LRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAA 301

Query: 149 -LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            +FD + +R +ISWN MIS Y   GM  E   L  ++   G   D  T+VSLI   ++  
Sbjct: 302 LVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTS 361

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           DLE G+ LH  +    ++    L   +VDMY KCG I +A  + GR  + + +V+ WT +
Sbjct: 362 DLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGR--MGKKNVITWTAM 419

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           + G  ++   ++A +LF +M E  + + ++ +  +++         CA +G+L  G  VH
Sbjct: 420 LVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVH--------CCAHLGSLTKGRTVH 471

Query: 328 VYIKKNQISID---------------NIELAYDLFS-EISEKNVYLWTSVIAAYAMAGHA 371
            +  ++  + D                I  A  LF+ E   K+V L  S+I  Y M GH 
Sbjct: 472 AHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHG 531

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
           + A+ ++  M E   KP+Q TF++LL+ACSH GLV+EG        R ++++P+ +HY C
Sbjct: 532 RYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYAC 591

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           +VDL  RAG LEE+   +  MP  P   +  +LL  CR H+N  +       L   D LN
Sbjct: 592 LVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLN 651

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
            G +V+L+NIYA+A + + ++ IR  +R  G+KK  GYSLIE G  V+ F + D  +P  
Sbjct: 652 SGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSW 711

Query: 552 EEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTSEKTT 595
            +IY +L  + + ++ +G + +TS                 H ERLA+AFGL+ST   + 
Sbjct: 712 ADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSL 771

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I+I  NLR+C DCH+  K  S++  REI++RD  RFH F  G+CSC D+W
Sbjct: 772 IKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 122/576 (21%), Positives = 231/576 (40%), Gaps = 111/576 (19%)

Query: 34  FANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           F N  P     ++ + S +++   + IH+ +I   +  +  ++ ++       G LG+A+
Sbjct: 41  FFNQAPSVFSSLLHQFS-NTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHAR 99

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEV------------------------------ 123
            +  Q   PE  + N++I   L N    EV                              
Sbjct: 100 NVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLL 159

Query: 124 ----------------FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
                           F ++LY+ +  V  L K G L +  ++FD +P +DV+ WN++I 
Sbjct: 160 DDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIG 219

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            Y   G++ E + +  +M   G+ P  VTM +L+ A  +    ++G   H ++    M  
Sbjct: 220 GYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGN 279

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
              +L  LVDMY   G  G A  +     +    ++ W  ++SGYV++    E+  LF  
Sbjct: 280 DVFVLTSLVDMYSNLGDTGSAALVFD--SMCSRSLISWNAMISGYVQNGMIPESYALFRR 337

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI----------- 335
           +V+          SG  +       + C+    L +G  +H  I + ++           
Sbjct: 338 LVQSG--------SGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIV 389

Query: 336 ----SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                   I+ A  +F  + +KNV  WT+++   +  G+A+ A+ LF +M+E     + V
Sbjct: 390 DMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSV 449

Query: 392 TFIALLSACSHGG-----------LVDEGY-----------DFLSKKSRVYNIKPKMQHY 429
           T ++L+  C+H G            +  GY           D  +K  ++++ +    + 
Sbjct: 450 TLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNE 509

Query: 430 GCMVDLL---------GRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLA 477
             + D++         G  GH   +    + M    + P+ + + SLL AC  H  +   
Sbjct: 510 FHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACS-HSGLVEE 568

Query: 478 EHAFKHLTETDPLNDGAH---VLLANIYAKAGRLDD 510
             A  H  E D      H     L +++++AGRL++
Sbjct: 569 GKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEE 604


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 192/575 (33%), Positives = 298/575 (51%), Gaps = 71/575 (12%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG++    + F+++  +DV  WN M+S YTS G +++ L +  KM  EGV P+ +T+ S
Sbjct: 158 KCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIAS 217

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEI 256
            +SA T L  L  G+ +H +  +   ++   LL  N LVD Y KC  +  A++  G   I
Sbjct: 218 AVSACTNLSLLRHGREIHGYCIK-VEELDSDLLVGNSLVDYYAKCRSVEVARRKFGM--I 274

Query: 257 DEVDVVLWTTL--VSGYVKSNERDEARR----------LFDEMVERNLISWTLMISGMLN 304
            + D+V W  +  V+G+ +  +   A            +F E+  R+++ W  +IS    
Sbjct: 275 KQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQ 334

Query: 305 QDAEFK-----------------------YKSCASIGALYHGIWVHVYIKKNQISIDN-- 339
                                          +C+ + AL  G  +H +I +  +   N  
Sbjct: 335 SGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI 394

Query: 340 -------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        I+ +  +F  + ++++  W  +I+ Y M G    A++LF +    G 
Sbjct: 395 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 454

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           KP+ +TF  LLSACSH GL++EG+ +       Y + P ++ Y CMVDLL RAG   E+ 
Sbjct: 455 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 514

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
            FI  MP  P+ ++W SLL ACR H N  LAE+A ++L E +P + G +VL+ANIY+ AG
Sbjct: 515 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 574

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
           R +D ++IR  +++ G+ K  G S IE    +H F  GD  +P  E+I   +  +   ++
Sbjct: 575 RWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIK 634

Query: 567 QQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
           + G                +E SL  H E++A+AFGLIST+  T +RI+ NLR+CGDCHS
Sbjct: 635 EIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHS 694

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             K  S+V  R+I++RDN RFH F  G CSC DYW
Sbjct: 695 ATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 199/467 (42%), Gaps = 110/467 (23%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +++  ++FDK+  R+V SW  ++  Y  +G Y E + L   M  EGV PD      + 
Sbjct: 59  GCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVF 118

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A ++L++  +GK+++ ++     + +  +   ++DM+ KCG++  A++     EI+  D
Sbjct: 119 KACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE--EIEFKD 176

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           V +W  +VSGY    E  +A  +F +MV   +   ++ I+  ++        +C ++  L
Sbjct: 177 VFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVS--------ACTNLSLL 228

Query: 321 YHGIWVHVY------------------------------------IKKNQISIDNIELAY 344
            HG  +H Y                                    IK+  +   N  LA 
Sbjct: 229 RHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAV 288

Query: 345 DLFSE-----------------------ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
             F++                       +S ++V +W S+I+A A +G +  A+DL  EM
Sbjct: 289 TGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREM 348

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDF----------------------------L 413
             +  + + VT ++ L ACS    + +G +                             +
Sbjct: 349 NLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSI 408

Query: 414 SKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFIT---SMPIPPDVSIWSSLLRAC 468
            K  R++++ P+  +  +  M+ + G  G   ++ N      +M + P+   +++LL AC
Sbjct: 409 QKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSAC 468

Query: 469 RCHQNVKLAEHAFKH--LTETDPLNDGA---HVLLANIYAKAGRLDD 510
               +  L E  +K+  + +T+   D A   +  + ++ ++AG+ ++
Sbjct: 469 ---SHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 512


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 199/619 (32%), Positives = 324/619 (52%), Gaps = 64/619 (10%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           +++HS +IT+   +D  IS  +  F    G   +   ++   + P     N +  N LIN
Sbjct: 82  KQVHSLIITSGGSKDKFISNHLLNFYSKLGQ--FKSSLVLFSNMPR---RNVMSFNILIN 136

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
           GY Q                   G L+   +LFD++  R++ +WN MI+  T     ++ 
Sbjct: 137 GYLQ------------------LGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQA 178

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
           L L  +M   G  PDE T+ S++     LR L  G+ +H  L +   ++S  + + L  M
Sbjct: 179 LSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHM 238

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297
           Y K G + + +KL+    I    VV W TL++G  ++   +E    ++ M         +
Sbjct: 239 YIKSGSLSDGEKLIKSMPIR--TVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKI 296

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI---------------DNIEL 342
               +L+        +C+ +  L  G  +H  + K   S                  +E 
Sbjct: 297 TFVSVLS--------ACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLED 348

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           +   F +    +V LW+S+IAAY   G  ++A++LF +ME+   + ++VTF++LL ACSH
Sbjct: 349 SIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSH 408

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GL ++G ++     + Y +KP+++HY C+VDLLGRAG LEE+   I SMP+ PD  IW 
Sbjct: 409 SGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWK 468

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL AC+ H+  ++AE   + + + DPL+  ++VLL+NI+A A    ++S+IR  +RD  
Sbjct: 469 TLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRS 528

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------ 570
           ++K+ G S +E    VH+F+ GD  +P   EI L L E+   L+Q G             
Sbjct: 529 VRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMD 588

Query: 571 ---QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
              +E +L  H E+ A+AF L++TSE   IR++ NLR+C DCH+ +K  S++ NREI++R
Sbjct: 589 NEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVR 648

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F+ G+CSC +YW
Sbjct: 649 DASRFHHFKDGECSCGNYW 667



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 142/312 (45%), Gaps = 44/312 (14%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ +  KL  L  GK +H  +  S       + N+L++ Y K G+   +  L     +  
Sbjct: 68  LLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSN--MPR 125

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA------- 307
            +V+ +  L++GY++  + + A++LFDEM ERN+ +W  MI+G+     N+ A       
Sbjct: 126 RNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEM 185

Query: 308 --------EFKYKS----CASIGALYHGIWVHVYIKKNQISIDNI---ELAY-------- 344
                   EF   S    CA + +L  G  VH  + K    + ++    LA+        
Sbjct: 186 YGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSL 245

Query: 345 ----DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
                L   +  + V  W ++IA  A  G  ++ ++ +  M+  G +PD++TF+++LSAC
Sbjct: 246 SDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSAC 305

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN-FITSMPIPPDVS 459
           S    + +G    ++  +       +     ++ +  R+G LE+S   F+       DV 
Sbjct: 306 SELATLGQGQQIHAEVIKA-GASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENF--DVV 362

Query: 460 IWSSLLRACRCH 471
           +WSS++ A   H
Sbjct: 363 LWSSMIAAYGFH 374


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 206/633 (32%), Positives = 321/633 (50%), Gaps = 91/633 (14%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           +I + +SC+   +  +IH+H+ITT+ ++DP +S     FL  T    +            
Sbjct: 30  LISLIKSCTHKSQLLQIHAHIITTSSIQDPIVS---LRFLTRTASAPFRDL--------- 77

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
                         GY +                          +LFD L N  V  +N 
Sbjct: 78  --------------GYSR--------------------------RLFDLLTNPFVSHYNA 97

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           M+  Y+      EGL +   M  +GV  D ++    + +  KL  L  G  +H  +  + 
Sbjct: 98  MLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIFING 157

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
            +    LL  ++D+Y  CGK  EA KL    E+ + DVV W  L+S   ++    +A  L
Sbjct: 158 HQADSLLLTSMMDLYSHCGKPEEACKLFD--EVPQKDVVAWNVLISCLTRNKRTRDALGL 215

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---- 339
           F+ M     +     ++ +L        ++CA + AL  G  +H YI+++  + ++    
Sbjct: 216 FEIMQSPTYLCQPDKVTCLL------LLQACADLNALEFGERIHGYIQQHGYNTESNLCN 269

Query: 340 -----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                      ++ AY++F +++EKNV  W+++I+  +M GH ++AI+ F EM++ G +P
Sbjct: 270 SLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEP 329

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
              TF A+LSACSH GLVDEG  F  +  + + I P + HYGC+VDLLGRAG L+++   
Sbjct: 330 GDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYEL 389

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I SM + PD ++W +LL ACR H +  L E   +HL E      G +VLL NIY+ AG  
Sbjct: 390 IMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNW 449

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
           D ++ +R  +++ G+      + IE  G VH+F   DI +P  ++IY  L+EI   L+  
Sbjct: 450 DKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIA 509

Query: 569 GLQ-ETSLQ---------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G + E S +               H E+LA+AFG+++T    TIRI NN+R C DCH+F 
Sbjct: 510 GYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFA 569

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K  S VYNR++V+RD  RFH FQ G+CSC D+W
Sbjct: 570 KYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 187/541 (34%), Positives = 291/541 (53%), Gaps = 42/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG + E  ++FD++  +D++SW ++I+ Y    M  E +GLL  M      P+  T
Sbjct: 95  LYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFT 154

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             SL+ A     D  +G+ +H    +        + + L+DMY +CG +  A  +  +  
Sbjct: 155 FASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDK-- 212

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +D  + V W  L+SG+ +  + + A   F EM+     +     S +        + S A
Sbjct: 213 LDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSV--------FSSIA 264

Query: 316 SIGALYHGIWVHVYIKKNQISI----DNIEL-----------AYDLFSEISEKNVYLWTS 360
            +GAL  G WVH ++ K++  +     N  L           A  +F  + +K++  W +
Sbjct: 265 RLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNT 324

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ A+A  G  ++A+  F EM ++G   +QVTF+ +L+ACSHGGLV EG  +  +  + Y
Sbjct: 325 MLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYF-EMMKEY 383

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           +++P++ H+  +V LLGRAG L  +  FI  MPI P  ++W +LL ACR H+N K+ + A
Sbjct: 384 DLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFA 443

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
             H+ E DP + G  VLL NIYA  G+ D  +R+R  ++  G+KK+   S +E    VH 
Sbjct: 444 ADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHM 503

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVA 584
           F + D  +P +EEIY M  +I   ++++G                +E +LQ H E+LA+A
Sbjct: 504 FVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALA 563

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F LI      TIRI+ N+RICGDCHS  K  S+V+ REIV+RD  RFH F  G CSC DY
Sbjct: 564 FALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADY 623

Query: 645 W 645
           W
Sbjct: 624 W 624



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/348 (20%), Positives = 134/348 (38%), Gaps = 84/348 (24%)

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           L  + A  ++P      + I+A  + ++LE  + +H  L  S       L N L+ +Y K
Sbjct: 39  LDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCK 98

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG + EA                                 R++FDEM  ++++SWT +I+
Sbjct: 99  CGSVLEA---------------------------------RKVFDEMRRKDMVSWTSLIA 125

Query: 301 GMLNQDAE-------------------FKYKSC---------ASIGALYHGIWVH----- 327
           G    D                     F + S          + IG   H + V      
Sbjct: 126 GYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHE 185

Query: 328 -VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
            VY+    + +      +++A  +F ++  KN   W ++I+ +A  G  + A+  F EM 
Sbjct: 186 DVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEML 245

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP--KMQHYG--CMVDLLGR 438
             G +    T+ ++ S+ +  G +++G     K    + IK   KM  +    ++D+  +
Sbjct: 246 RNGFEATHFTYSSVFSSIARLGALEQG-----KWVHAHMIKSRQKMTAFAGNTLLDMYAK 300

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +G + ++      +    D+  W+++L A        L + A  H  E
Sbjct: 301 SGSMIDARKVFDRVD-DKDLVTWNTMLTA---FAQYGLGKEAVSHFEE 344


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 199/552 (36%), Positives = 292/552 (52%), Gaps = 51/552 (9%)

Query: 130 LVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           L T+ V L   C  L     LFD++  R++  WN MI  Y   G Y   + L  +M   G
Sbjct: 38  LATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYG 97

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           + PD+ T   ++ A + L  +E GK +H  +  S ++    +   L+DMY KCG +  A+
Sbjct: 98  LVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESAR 157

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL--ISWTLMIS------ 300
           ++  +  IDE DVV W ++++ Y ++ + DE+  L   M    L     T +IS      
Sbjct: 158 QVFDK--IDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASAD 215

Query: 301 -GMLNQDAEFKYKSCASIGALYHGI-WVHVYIKKNQISI---------DNIELAYDLFSE 349
            G+L Q  E             HG  W H +   +++            ++ +A  LF  
Sbjct: 216 NGLLPQGKEL------------HGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFEL 263

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + EK V  W ++I  YAM GHA +A+DLF EM+     PD +TF+ +L+ACSHGGL++EG
Sbjct: 264 LEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLPDHITFVGVLAACSHGGLLNEG 322

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
                     +NI P +QHY CM+DLLG  G LEE+   I  M + PD  +W +LL +C+
Sbjct: 323 KMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCK 382

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            H NV++ E A + L E +P + G +V+L+N+YA+AG+ D ++R+R  + + GLKK +  
Sbjct: 383 IHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIAC 442

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ET 573
           S IE G  VH F S D  +P SE IY  L      +++ G                  + 
Sbjct: 443 SWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDM 502

Query: 574 SLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
              H ERLA+AFGLISTS  T + I+ NLRIC DCH  +K  S++  REI IRD  R+H 
Sbjct: 503 VSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHH 562

Query: 634 FQGGQCSCRDYW 645
           F+ G CSC D+W
Sbjct: 563 FKDGVCSCGDFW 574



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 146/340 (42%), Gaps = 30/340 (8%)

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            SL+ +    + +E GK LH  + +  +  +  L   LV++Y  C  +  A  L  R  I
Sbjct: 5   ASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDR--I 62

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + ++ LW  ++ GY  +   + A  L+ +M +  L+               F  K+C++
Sbjct: 63  SKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFP--------FVLKACSA 114

Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
           + A+  G  +H  + ++ +  D                +E A  +F +I E++V  W S+
Sbjct: 115 LSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSM 174

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           +A Y+  G   +++ L   M   G KP + TF+  ++A +  GL+ +G + L   S  + 
Sbjct: 175 LATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKE-LHGYSWRHG 233

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            +   +    ++D+  ++G +  + +    +     VS W++++     H +   A   F
Sbjct: 234 FESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVS-WNAMITGYAMHGHANEALDLF 292

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
           K + +   L D  H+    + A       ++  +M  R M
Sbjct: 293 KEM-KGKVLPD--HITFVGVLAACSHGGLLNEGKMHFRSM 329



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 116/282 (41%), Gaps = 55/282 (19%)

Query: 39  PVSLDVIMVERSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P       V ++CS++   +E ++IH  +I + L  D  +   + +     G +  A+Q+
Sbjct: 100 PDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQV 159

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV------------------------ 131
             + DE ++  WNS++     NG P E  A+   +                         
Sbjct: 160 FDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLL 219

Query: 132 --------------------TRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
                                +T L++   K G +     LF+ L  + V+SWN MI+ Y
Sbjct: 220 PQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGY 279

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
              G   E L L  +M  + V PD +T V +++A +    L  GK +H     S   I  
Sbjct: 280 AMHGHANEALDLFKEMKGK-VLPDHITFVGVLAACSHGGLLNEGK-MHFRSMISDFNIWP 337

Query: 229 SLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           ++ +Y  ++D+   CG++ EA KL+    + E D  +W  L+
Sbjct: 338 TVQHYTCMIDLLGHCGRLEEAYKLIMEMRV-EPDAGVWGALL 378


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 186/538 (34%), Positives = 299/538 (55%), Gaps = 41/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L     +F  + ++ V SWN +I  +   G  R+ L L   M   G+ PD  T+ S
Sbjct: 448 KCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIAS 507

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+SA  +L+ L  GK +H  +  +  ++   +   LV +Y +CGKI  A+      E  E
Sbjct: 508 LLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNME--E 565

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            ++V W T+++G+ ++    +A  +F +M+   +    + I G L         +C+ + 
Sbjct: 566 KNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALG--------ACSQVS 617

Query: 319 ALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSVIA 363
           AL  G  +H +  K+ ++         ID       +E + ++F  +  K    W  +I 
Sbjct: 618 ALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLIT 677

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y + GH +KAI+LF  M+  G +PD VTFIALL+AC+H GLV EG ++L +   ++ IK
Sbjct: 678 GYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIK 737

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           PK++HY C+VD+LGRAG L E+   +  +P  PD  IWSSLL +CR ++++ + E     
Sbjct: 738 PKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANK 797

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L E  P     +VL++N YA+ G+ D++ ++R +++++GL+K  G S IE GG V +F  
Sbjct: 798 LLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLV 857

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSL---------------QHRERLAVAFGL 587
           GD     S +I     E+E  + + G + +TS                 H E+LA++FGL
Sbjct: 858 GDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGL 917

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++T++ TT+R+  NLRIC DCH+ +K+ S++  REI++RDN RFH F+ G CSC DYW
Sbjct: 918 LNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 152/309 (49%), Gaps = 43/309 (13%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPD 192
            +  K G ++   ++FDK+P R+++SWN+++      G++ E  GL   +  G EG+ PD
Sbjct: 239 AMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPD 298

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEE----STMKISGSLLNYLVDMYFKCGKIGEAQ 248
             TMV++I    +  ++ +G   H    +      +K++ SLL    DMY KCG + EA+
Sbjct: 299 VATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLL----DMYSKCGYLCEAR 354

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD--EMVERNLISWTLMISGMLNQD 306
            L   ++ +E +V+ W +++ GY K  +   A  L    +M ++  ++   +++ +   +
Sbjct: 355 VL---FDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCE 411

Query: 307 AEFKYKSCASIG--ALYHGIWVHVYIKKNQISID----------NIELAYDLFSEISEKN 354
            E ++     I   AL HG     +I+ +++  +          ++  A  +F  +  K 
Sbjct: 412 EEIQFLKLKEIHGYALRHG-----FIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKM 466

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HG 403
           V  W ++I  +   G  +KA+DL+L M  +G +PD  T  +LLSAC+           HG
Sbjct: 467 VSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHG 526

Query: 404 GLVDEGYDF 412
            ++  G++ 
Sbjct: 527 SMLRNGFEL 535



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 42/227 (18%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKY---- 311
           DVVL T LV+ Y   +   ++  +F+    +NL  W  ++SG L     +DA F +    
Sbjct: 128 DVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMI 187

Query: 312 ----------------KSCASIGALYHGIWVHVYIKKNQISID---------------NI 340
                           K+C  +  +  G  VH +  K ++  D                +
Sbjct: 188 SLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFV 247

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF--LEMEETGTKPDQVTFIALLS 398
           E A  +F ++ ++N+  W SV+ A    G  +++  LF  L   + G  PD  T + ++ 
Sbjct: 248 ESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIP 307

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
            C+  G V  G  F     ++  +  +++    ++D+  + G+L E+
Sbjct: 308 LCARQGEVRLGMVFHGLALKL-GLCGELKVNSSLLDMYSKCGYLCEA 353


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 208/707 (29%), Positives = 356/707 (50%), Gaps = 97/707 (13%)

Query: 21  RLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQIST 77
           R+ LV +M IS     + P    +  V  +C+ +++     ++H +LI      DP  + 
Sbjct: 172 RVALVTEM-IS---TGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSAN 227

Query: 78  QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII-------ENQL--------------- 115
            + +    +G    A  +  +  +P+I  WN++I       +N L               
Sbjct: 228 ALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAP 287

Query: 116 ----INGYPQEVFAIYLYLVTRTV---------------------LLNKCGKLKEVCQLF 150
               ++   +   AI L  + R +                     + +KCG L++   +F
Sbjct: 288 SMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVF 347

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           D +P +DVI WN++IS Y++ G   E + L + M  EG+  ++ T+ +++ +    +   
Sbjct: 348 DLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANG 407

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVS 269
             + +H    +S  +  G + N L+D Y KC  + +A K+   +E+    D+V +T++++
Sbjct: 408 FCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKV---FEVCPAEDLVAYTSMIT 464

Query: 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY 329
            Y +    +EA +++  M +R++     + S + N        +CA++ A   G  +HV+
Sbjct: 465 AYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFN--------ACANLSAYEQGKQIHVH 516

Query: 330 IKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           + K  +  D               +I+ A  +F+EIS + +  W+++I   A  GH +KA
Sbjct: 517 VLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKA 576

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434
           + LF +M + G  P+ +T +++LSAC+H GLV E   F     +++ I P  +HY CMVD
Sbjct: 577 LQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVD 636

Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
           +LGR G L+E+   +  MP     ++W +LL A R H+N++L  HA + L   +P   G 
Sbjct: 637 ILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGT 696

Query: 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEI 554
           H+LLANIYA  G  D+++++R  +++  +KK+ G S IE    V+ F  GD  +P S+EI
Sbjct: 697 HILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEI 756

Query: 555 YLMLNEIEMTLQQQG---LQETSL-------------QHRERLAVAFGLISTSEKTTIRI 598
           Y+ L+++   L   G   + ET L              H E+LAVAFGLI+T     IR+
Sbjct: 757 YVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRV 816

Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             NLR+C DCH+  K  S+V +REI++RD  RFH F+ G CSC DYW
Sbjct: 817 KKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 197/474 (41%), Gaps = 77/474 (16%)

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY--LYLVTRTVLLNKCGKLKEVCQL 149
           A++++    EP++  W+++I   + NG  +E    Y  +YL+           + + C L
Sbjct: 101 ARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSL 160

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
              L                 +G     + L+++M + G+SP+E ++ ++++A   L D 
Sbjct: 161 TRNL----------------ELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDE 204

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
             G  +H +L +          N L+DMY K G    A  +   YEI + D+V W  +++
Sbjct: 205 NYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVF--YEIPKPDIVSWNAVIA 262

Query: 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY 329
           G V   + D A +L  +M    +      +S  L        K+CA+IG +  G  +H  
Sbjct: 263 GCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSAL--------KACAAIGLVKLGRQLHSA 314

Query: 330 IKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           + K  +  D+               ++ A  +F  +  K+V +W S+I+ Y+  G+  +A
Sbjct: 315 LMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEA 374

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDF----------- 412
           + LF  M + G + +Q T   +L + +           H   +  GY +           
Sbjct: 375 MSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDS 434

Query: 413 ------LSKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSMP---IPPDVSIW 461
                 L   ++V+ + P   +  Y  M+    + G  EE+      M    I PD  I+
Sbjct: 435 YGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIF 494

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHVLLANIYAKAGRLDDMSRI 514
           SSL  AC      +  +    H+ +   L+D  A   L N+YAK G +DD S I
Sbjct: 495 SSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCI 548


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 196/543 (36%), Positives = 310/543 (57%), Gaps = 32/543 (5%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           +T  +L+N   KCG ++   +LFD++P R ++SWNTM+  +T  G   + L L  +M  E
Sbjct: 56  ITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKE 115

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G S  E T+ S++ A      +   K LH F  ++ +  +  +   L+D+Y KCG + +A
Sbjct: 116 GTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDA 175

Query: 248 QKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGM 302
             +   +E + E   V W+++V+GYV++   +EA  LF       +E N  + +  +S  
Sbjct: 176 NLV---FECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSAC 232

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN----IELAYDLFSEISEKNVYLW 358
             + A  + K   ++ +   GI  ++++  + I +      IE AY +FS + EKNV LW
Sbjct: 233 AARAALIEGKQVQAV-SCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLW 291

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            ++++ ++    + +A+  F +M++ G  P+ +T+I++LSACSH GLV++G  +     R
Sbjct: 292 NAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIR 351

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
           V+N+ P + HY CMVD+LGRAG L E+ +FI  MP     S+W SLL +CR ++N++LAE
Sbjct: 352 VHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAE 411

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A KHL E +P N G HVLL+NIYA   R ++++R R  L++   KK+ G S IE    V
Sbjct: 412 VAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKV 471

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLA 582
           H F  G+  +P   EIYL L ++   +++ G                 QE    H E+LA
Sbjct: 472 HSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLA 531

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           + FG++       IRI+ NLRICGDCHSFMK+ S +  REI++RD  RFH F+ G CSC 
Sbjct: 532 LTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCG 591

Query: 643 DYW 645
           ++W
Sbjct: 592 EFW 594


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 306/559 (54%), Gaps = 58/559 (10%)

Query: 128 LYLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +YL TR ++L NKC  L +  ++FD++P ++V+SW  MIS Y+  G   E L L  +M  
Sbjct: 125 VYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLR 184

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL----EESTMKISGSLLNYLVDMYFKCG 242
               P+  T  +++++       E G+ +H        ES M +  SLL    DMY K G
Sbjct: 185 SDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLL----DMYAKSG 240

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
           +I +A  +   + + E DVV  T ++SGY +    +EA +LF ++    + S ++  + +
Sbjct: 241 RICDAHGVF--HCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASV 298

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYI-KKNQIS--------ID------NIELAYDLF 347
           L         + + + AL HG  VH ++ +  Q S        ID      N+  A  +F
Sbjct: 299 LT--------ALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIF 350

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLF-LEMEETGTKPDQVTFIALLSACSHGGLV 406
             + E+    W +++  Y+  G A++ ++LF L  EE   KPD +T++A+LS CSHG L 
Sbjct: 351 DSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLE 410

Query: 407 DEG----YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           D G    Y+ ++ K     I+P + HYGC+VDLLGRAG +EE+ +FI  MP  P  +IW 
Sbjct: 411 DMGLEIFYNMVNGKD---GIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWG 467

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           SLL +CR H +V++     + L E +P N G +V+L+N+YA AG+ +DM  IR  +++  
Sbjct: 468 SLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKA 527

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------ 570
           + K+ G S +E    VH F + D  +P  EE+   + E+ +  ++ G             
Sbjct: 528 VTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVD 587

Query: 571 ----QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
               ++  L H E+LA+AFGLI+T E TTIR++ NLRIC DCHSF K  S++Y R +++R
Sbjct: 588 EEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILR 647

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH   GG CSC DYW
Sbjct: 648 DKNRFHNIVGGVCSCGDYW 666



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 165/355 (46%), Gaps = 25/355 (7%)

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
           S G  +E L  ++ +G E       T+++   ++  +R+   G+ +H  + ++    S  
Sbjct: 70  SSGQLKEALLQMAILGREVKFEGYDTILNECVSQRAIRE---GQRVHTHMIKTCYLPSVY 126

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV- 288
           L   L+ +Y KC  +G+A+++    E+ + +VV WT ++S Y +     EA  LF EM+ 
Sbjct: 127 LRTRLIVLYNKCDCLGDAREMFD--EMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLR 184

Query: 289 ---ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIE 341
              E N  ++  +++           +   SI A+      H+++  + + +      I 
Sbjct: 185 SDTEPNHFTFATILTSCYGSLGFETGRQIHSI-AIKRNYESHMFVGSSLLDMYAKSGRIC 243

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A+ +F  + E++V   T++I+ YA  G  ++A+ LF +++  G   + VT+ ++L+A S
Sbjct: 244 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS 303

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPD 457
               ++ G     K+   + ++     Y      ++D+  + G++  +     SMP    
Sbjct: 304 GLAALNHG-----KQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTC 358

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA-GRLDDM 511
           +S W+++L     H   +     FK + E + +   +   LA +   + G+L+DM
Sbjct: 359 IS-WNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDM 412


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 196/543 (36%), Positives = 310/543 (57%), Gaps = 32/543 (5%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           +T  +L+N   KCG ++   +LFD++P R ++SWNTM+  +T  G   + L L  +M  E
Sbjct: 83  ITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKE 142

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G S  E T+ S++ A      +   K LH F  ++ +  +  +   L+D+Y KCG + +A
Sbjct: 143 GTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDA 202

Query: 248 QKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGM 302
             +   +E + E   V W+++V+GYV++   +EA  LF       +E N  + +  +S  
Sbjct: 203 NLV---FECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSAC 259

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN----IELAYDLFSEISEKNVYLW 358
             + A  + K   ++ +   GI  ++++  + I +      IE AY +FS + EKNV LW
Sbjct: 260 AARAALIEGKQVQAV-SCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLW 318

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            ++++ ++    + +A+  F +M++ G  P+ +T+I++LSACSH GLV++G  +     R
Sbjct: 319 NAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIR 378

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
           V+N+ P + HY CMVD+LGRAG L E+ +FI  MP     S+W SLL +CR ++N++LAE
Sbjct: 379 VHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAE 438

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A KHL E +P N G HVLL+NIYA   R ++++R R  L++   KK+ G S IE    V
Sbjct: 439 VAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKV 498

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLA 582
           H F  G+  +P   EIYL L ++   +++ G                 QE    H E+LA
Sbjct: 499 HSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLA 558

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           + FG++       IRI+ NLRICGDCHSFMK+ S +  REI++RD  RFH F+ G CSC 
Sbjct: 559 LTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCG 618

Query: 643 DYW 645
           ++W
Sbjct: 619 EFW 621


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 315/571 (55%), Gaps = 54/571 (9%)

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTM 164
           N I  +   NG+   +F +        VL+N   K   L +  QLFD++P R+VISW TM
Sbjct: 81  NLICRHLYFNGHRPMMFLV-------NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTM 133

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           IS Y+   ++++ L LL  M  + V P+  T  S++ +   + D+ M   LH  + +  +
Sbjct: 134 ISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGL 190

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRY-EIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           +    + + L+D++    K+GE +  L  + E+   D ++W +++ G+ +++  D A  L
Sbjct: 191 ESDVFVRSALIDVF---AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALEL 247

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK-------NQIS 336
           F  M     I+    ++ +L        ++C  +  L  G+  HV+I K       N   
Sbjct: 248 FKRMKRAGFIAEQATLTSVL--------RACTGLALLELGMQAHVHIVKYDQDLILNNAL 299

Query: 337 ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           +D      ++E A  +F+++ E++V  W+++I+  A  G++Q+A+ LF  M+ +GTKP+ 
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           +T + +L ACSH GL+++G+ +     ++Y I P  +HYGCM+DLLG+AG L+++   + 
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            M   PD   W +LL ACR  +N+ LAE+A K +   DP + G + LL+NIYA + + D 
Sbjct: 420 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDS 479

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE---------- 560
           +  IR ++RD G+KK+ G S IE    +H F  GD  +P   E+   LN+          
Sbjct: 480 VEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGY 539

Query: 561 ------IEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                 +   L+ + ++++   H E+LA+AFGL++   +  IRI  NLRICGDCH F K+
Sbjct: 540 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S++  R IVIRD  R+H FQ G+CSC DYW
Sbjct: 600 ASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 53/306 (17%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           II++G E ++ + +++I          +VFA             K G+ ++   +FD++ 
Sbjct: 185 IIKEGLESDVFVRSALI----------DVFA-------------KLGEPEDALSVFDEMV 221

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
             D I WN++I  +         L L  +M   G   ++ T+ S++ A T L  LE+G  
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
            H+ + +    +   L N LVDMY KCG + +A ++    ++ E DV+ W+T++SG  ++
Sbjct: 282 AHVHIVKYDQDL--ILNNALVDMYCKCGSLEDALRVFN--QMKERDVITWSTMISGLAQN 337

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
               EA +LF+ M         + I G+L         +C+  G L  G W +    K  
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLF--------ACSHAGLLEDG-WYYFRSMKKL 388

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
             ID +   Y    ++  K              AG    A+ L  EME    +PD VT+ 
Sbjct: 389 YGIDPVREHYGCMIDLLGK--------------AGKLDDAVKLLNEME---CEPDAVTWR 431

Query: 395 ALLSAC 400
            LL AC
Sbjct: 432 TLLGAC 437


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 288/532 (54%), Gaps = 49/532 (9%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++F+ + + +V+SW  +IS Y      +E + L   M    V+P+  T  S++ A   L 
Sbjct: 304 KIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLP 363

Query: 208 DLEMGKNLH---LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           D  +GK LH   + L  ST+   G   N L++MY + G +  A+K      + E +++ +
Sbjct: 364 DFGIGKQLHGQTIKLGLSTINCVG---NSLINMYARSGTMECARKAFNI--LFEKNLISY 418

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324
            T      K+ + DE+   F+  VE   +  +      L   A       A IG +  G 
Sbjct: 419 NTAADANAKALDSDES---FNHEVEHTGVGASPFTYACLLSGA-------ACIGTIVKGE 468

Query: 325 WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
            +H  I K+    +               N E A  +F+++  +NV  WTS+I+ +A  G
Sbjct: 469 QIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHG 528

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
            A KA++LF EM E G KP++VT+IA+LSACSH GL+DE +   +     ++I P+M+HY
Sbjct: 529 FATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHY 588

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
            CMVDLLGR+G L E+  FI SMP   D  +W + L +CR H+N KL EHA K + E +P
Sbjct: 589 ACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREP 648

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            +   ++LL+N+YA  GR DD++ +R  ++   L K+ GYS IE    VHKF  GD  +P
Sbjct: 649 HDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHP 708

Query: 550 HSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEK 593
            + +IY  L+E+ + ++  G                 ++   QH E++AVA+ LIST + 
Sbjct: 709 QARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKP 768

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             IR+  NLR+CGDCH+ +K  S V  REIV+RD  RFH  + G+CSC DYW
Sbjct: 769 KPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 133/276 (48%), Gaps = 27/276 (9%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FDK+ ++++++W  MI+ Y+ +G+  + + L  ++     +PD+ T+ SL+SA  +L  
Sbjct: 204 VFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEF 263

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
             +GK LH ++  S +     +   LVDMY K   +  ++K+     +   +V+ WT L+
Sbjct: 264 FSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFN--TMLHHNVMSWTALI 321

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           SGYV+S +  EA +LF  M+  ++       S +L        K+CAS+     G  +H 
Sbjct: 322 SGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVL--------KACASLPDFGIGKQLHG 373

Query: 329 YIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
              K  +S  N               +E A   F+ + EKN+  + +   A A A  + +
Sbjct: 374 QTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDE 433

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + +   E+E TG      T+  LLS  +  G + +G
Sbjct: 434 SFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKG 467



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 129/285 (45%), Gaps = 26/285 (9%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ A  +  +LE+GK LH  L +S + +   LLN L+ +Y KCG    A  +       +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVE--RNLI-----SWTLMISGMLNQDAEFKY 311
            D+V W+ ++S +  ++    A   F  M++  RN+I      +T ++    N    F  
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSN--PLFFT 162

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID-------NIELAYDLFSEISEKNVYLWTSVIAA 364
              A    L    +   ++      ID       +I+ A  +F ++  KN+  WT +I  
Sbjct: 163 TGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITR 222

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           Y+  G    A+DLF  +  +   PD+ T  +LLSAC     V+  +  L K+   + I+ 
Sbjct: 223 YSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSAC-----VELEFFSLGKQLHSWVIRS 277

Query: 425 KMQH---YGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            +      GC +VD+  ++  +E S     +M +  +V  W++L+
Sbjct: 278 GLASDVFVGCTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALI 321



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 145/330 (43%), Gaps = 31/330 (9%)

Query: 135 VLLNKCGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKM---GAEGV 189
            L +KCG  +    +F  + +  RD++SW+ +ISC+ +  M    L     M       +
Sbjct: 82  TLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNII 141

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN-YLVDMYFKCG-KIGEA 247
            P+E    +L+ + +       G  +  FL ++    S   +   L+DM+ K G  I  A
Sbjct: 142 YPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSA 201

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           + +  +  +   ++V WT +++ Y +    D+A  LF  ++          ++ +L+   
Sbjct: 202 RMVFDK--MQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACV 259

Query: 308 EFKYKSCASIGALYH------GIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYL 357
           E ++    S+G   H      G+   V++    + +      +E +  +F+ +   NV  
Sbjct: 260 ELEF---FSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMS 316

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           WT++I+ Y  +   Q+AI LF  M      P+  TF ++L AC+   L D G   + K+ 
Sbjct: 317 WTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACA--SLPDFG---IGKQL 371

Query: 418 RVYNIKPKMQHYGC----MVDLLGRAGHLE 443
               IK  +    C    ++++  R+G +E
Sbjct: 372 HGQTIKLGLSTINCVGNSLINMYARSGTME 401



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG  +   Q+F+ +  R+VI+W ++IS +   G   + L L  +M   GV P+EVT
Sbjct: 492 MYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVT 551

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            ++++SA + +  ++     H         IS  + +Y  +VD+  + G + EA + +  
Sbjct: 552 YIAVLSACSHVGLIDEAWK-HFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINS 610

Query: 254 YEIDEVDVVLWTTLV 268
              D  D ++W T +
Sbjct: 611 MPFD-ADALVWRTFL 624


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 203/689 (29%), Positives = 341/689 (49%), Gaps = 96/689 (13%)

Query: 41  SLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97
           SL  I++    +S++  E   +IH  ++     +   ++       V  G + YA+++  
Sbjct: 297 SLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFG 356

Query: 98  QGDEPEIKIWNSIIENQLINGYPQEVFAIYL---------------------------YL 130
           Q  E ++  WN++I     +G  +    +++                           Y 
Sbjct: 357 QMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYC 416

Query: 131 VTRTV---------------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           V R V                     + +K GK++E   LF      D+ SWN M+  +T
Sbjct: 417 VGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFT 476

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
               YRE L L S M   G   D++T  +   A   L  L+ GK +H  + +        
Sbjct: 477 VSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLF 536

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           +++ ++DMY KCG++  A+K+    +I   D V WTT++SG V++ E ++A   + +M  
Sbjct: 537 VISGILDMYLKCGEMKSARKVFN--QIPSPDDVAWTTVISGCVENGEEEQALFTYHQM-- 592

Query: 290 RNLISWTLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISID--------- 338
                    ++G+   +  F    K+C+ + AL  G  +H  I K   + D         
Sbjct: 593 --------RLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVD 644

Query: 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                 NIE AY LF  ++ ++V LW ++I   A  G+A++A++ F EM+  G  PD+VT
Sbjct: 645 MYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVT 704

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           FI +LSACSH GL  + Y       + Y ++P+++HY C+VD L RAGH++E+   ++SM
Sbjct: 705 FIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSM 764

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P     +++ +LL ACR   + +  E   + L   DP +  A+VLL+NIYA A + ++  
Sbjct: 765 PFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAV 824

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-- 570
             R  ++ + +KK+ G+S I+    VH F +GD  +  ++ IY  +  +   ++++G   
Sbjct: 825 SARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVP 884

Query: 571 -------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
                        +E++L  H E+LA+A+GL+ T   TT+R++ NLR+CGDCH+ +K  S
Sbjct: 885 DTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYIS 944

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            V+ REIV+RD  RFH F+ G CSC DYW
Sbjct: 945 NVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 179/433 (41%), Gaps = 79/433 (18%)

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL 149
           GYA +I  Q        W+  +   L+N Y                   K  +++E   L
Sbjct: 146 GYAVKIGLQ--------WDVFVAGALVNIYA------------------KFQRIREARVL 179

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FD++P RDV+ WN M+  Y  MG   E LGL S     G+ PD       +S RT L  +
Sbjct: 180 FDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPD------CVSVRTIL--M 231

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
            +GK      E   ++   + L       F C               D+ DV +W   +S
Sbjct: 232 GVGKKTVFERELEQVRAYATKL-------FVCD--------------DDSDVTVWNKTLS 270

Query: 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH-- 327
            Y+++ E  EA   F +M++  +   +L    +L+  A   +     +G   HG  V   
Sbjct: 271 SYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNH---LELGKQIHGAVVRFG 327

Query: 328 ----VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
               V +  + I++     ++  A  +F ++ E ++  W +VI+  A +G  + ++ LF+
Sbjct: 328 WDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFI 387

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDL 435
           ++  +G  PDQ T  ++L ACS    ++E Y  + ++     +K  +         ++D+
Sbjct: 388 DLLRSGLLPDQFTITSVLRACSS---LEESY-CVGRQVHTCALKAGIVLDSFVSTALIDV 443

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
             + G +EE A  +       D++ W++++       N + A   F  + E     D   
Sbjct: 444 YSKGGKMEE-AELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKAD--Q 500

Query: 496 VLLANIYAKAGRL 508
           +  AN    AG L
Sbjct: 501 ITFANAAKAAGCL 513



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 13/203 (6%)

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           DL +GK  H  +  S +     + N L+ MY KCG +  A+KL       + D+V +  +
Sbjct: 28  DLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAI 87

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK----YKSCASIGALYH- 322
           ++ Y  + E  +  +  +      L+  ++M++        FK    Y S ++  AL   
Sbjct: 88  LAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGY 147

Query: 323 ----GIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
               G+   V++    ++I      I  A  LF  +  ++V LW  ++ AY   G   + 
Sbjct: 148 AVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEV 207

Query: 375 IDLFLEMEETGTKPDQVTFIALL 397
           + LF     +G +PD V+   +L
Sbjct: 208 LGLFSAFHRSGLRPDCVSVRTIL 230


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 179/534 (33%), Positives = 291/534 (54%), Gaps = 41/534 (7%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L+ V ++FD++P +DV+SWNT++      G + E LGL+ +M  +G  PD  T+ S++  
Sbjct: 123 LESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPI 182

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
             +  D+  G  LH F   +       + + L+DMY  C +   + K+     +   D +
Sbjct: 183 FAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR--DAI 240

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           LW ++++G  ++   DEA  LF  M+   +    +  S ++         +C ++ +L  
Sbjct: 241 LWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLI--------PACGNLASLLL 292

Query: 323 GIWVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H Y+ +             ID      N+ +A  +F  I   ++  WT++I  +A+
Sbjct: 293 GKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHAL 352

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G A++A+ LF  ME    KP+ +TF+A+L+ACSH GLVD+G+ + +  S  Y I P ++
Sbjct: 353 HGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLE 412

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           H+  + D LGR G LEE+ NFI+ M I P  S+WS+LLRAC+ H+N  LAE   K + + 
Sbjct: 413 HHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDL 472

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P + G+H++L+N Y+ +GR ++ + +R  +R  G++K+   S IE     H F + D  
Sbjct: 473 EPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKS 532

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL--------------QETSL--QHRERLAVAFGLISTS 591
           +P  E I   LN     + +QG               Q+ S+   H E+LA+ FG+IST 
Sbjct: 533 HPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTP 592

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             TTIR++ NLR+C DCH+  K  S++  REIV+RD  RFH F+ G CSC D+W
Sbjct: 593 PGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 6/176 (3%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           NG+  +VF +   L+    +   C +     ++FD LP RD I WN+M++     G   E
Sbjct: 202 NGFHDDVF-VGSSLID---MYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDE 257

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            LGL  +M   G+ P  VT  SLI A   L  L +GK LH ++       +  + + L+D
Sbjct: 258 ALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLID 317

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
           MY KCG +  A+++  R  I   D+V WT ++ G+       EA  LFD M   NL
Sbjct: 318 MYCKCGNVSIARRIFDR--IQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNL 371



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +    ++FD++ + D++SW  MI  +   G  RE L L  +M    + P+ +T ++
Sbjct: 321 KCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLA 380

Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +++A +    ++ G K  +   +   +  S      L D   + GK+ EA   +   +I 
Sbjct: 381 VLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIK 440

Query: 258 EVDVVLWTTLVSGYVKSN---ERDEARRLFD----EMVERNLISWTLMISGMLNQDAEFK 310
               V  T L +  V  N     + A+++FD     M    ++S T   SG  N+ A  +
Sbjct: 441 PTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLR 500


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 212/629 (33%), Positives = 326/629 (51%), Gaps = 108/629 (17%)

Query: 45  IMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT-----GDLGYAQQIIRQG 99
           I + ++C S+   ++I + ++ T      Q    + +F+V       G+L YA++I    
Sbjct: 36  IFLLKNCKSMQHLKQIQTQILRTGFH---QSGDTLNKFMVCCTDPSIGNLHYAERIFNYI 92

Query: 100 DEPEIKIWNSIIENQLING-----------------------YP------------QEVF 124
           D P + I+N +I+    NG                       YP            +E  
Sbjct: 93  DIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGE 152

Query: 125 AIYLYLVTRTV------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG 172
            +Y ++V   +            +  + G+++ + Q+F+++P RDV+SWN +IS Y    
Sbjct: 153 KVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCR 212

Query: 173 MYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES---TMKISG 228
            Y + + +  +M  +  + P+E T+VS +SA   L+ LE+GK +H ++ E    T+KI  
Sbjct: 213 RYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIG- 271

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
              N LVDMY KCG +  A+++     I    V+ WT++VSGYV   + DEAR LF+   
Sbjct: 272 ---NALVDMYCKCGHLSIAREIFNDMPIK--TVICWTSMVSGYVNCGQLDEARELFERSP 326

Query: 289 ERNLISWTLMISGMLN----QDA-----EFKYK--------------SCASIGALYHGIW 325
            R+++ WT MI+G +      DA     E + K               CA +G L  G W
Sbjct: 327 VRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKW 386

Query: 326 VHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           +H YI +N+I ID                IE + ++F+ + EK+   WTS+I   AM G 
Sbjct: 387 IHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGK 446

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
             KA++LF EM +TG KPD +TFI +LSACSHGGLV+EG       + VY I+PK++HYG
Sbjct: 447 TSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYG 506

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPD---VSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           C++DLLGRAG L+E+   I   P   +   V ++ +LL ACR H NV++ E   K L   
Sbjct: 507 CLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGI 566

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +  +   H LLANIYA A R +D++++R K++D+G+KK  G S +E  G VH+F  GD  
Sbjct: 567 ESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDAS 626

Query: 548 NPHSEEIYLMLNEIEMTLQQQGLQETSLQ 576
           +P   EIY ML+ I   L   GL E  ++
Sbjct: 627 HPEMREIYSMLDSIAKPL--LGLDENEME 653


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 305/559 (54%), Gaps = 58/559 (10%)

Query: 128 LYLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +YL TR ++L NKC  L +   +FD++P R+V+SW  MIS Y+  G   E L L  +M  
Sbjct: 97  VYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLR 156

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL----EESTMKISGSLLNYLVDMYFKCG 242
               P+  T  +++++       E G+ +H        ES M +  SLL    DMY K G
Sbjct: 157 SDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLL----DMYAKSG 212

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
           +I +A  +   + + E DVV  T ++SGY +    +EA +LF ++    + S ++  + +
Sbjct: 213 RICDAHGVF--HCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASV 270

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYI-KKNQIS--------ID------NIELAYDLF 347
           L         + + + AL HG  VH ++ +  Q S        ID      N+  A  +F
Sbjct: 271 LT--------ALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIF 322

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLF-LEMEETGTKPDQVTFIALLSACSHGGLV 406
             + E+    W +++  Y+  G A++ ++LF L  EE   KPD +T++A+LS CSHG L 
Sbjct: 323 DSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLE 382

Query: 407 DEG----YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           D G    Y+ ++ K     I+P + HYGC+VDLLGRAG +EE+ +FI  MP  P  +IW 
Sbjct: 383 DMGLEIFYNMVNGKD---GIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWG 439

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           SLL +CR H +V++     + L E +P N G +V+L+N+YA AG+ +DM  IR  +++  
Sbjct: 440 SLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKA 499

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------ 570
           + K+ G S +E    VH F + D  +P  EE+   + E+ +  ++ G             
Sbjct: 500 VTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVD 559

Query: 571 ----QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
               ++  L H E+LA+AFGLI+T E TTIR++ NLRIC DCHSF K  S++Y R +++R
Sbjct: 560 EEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILR 619

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH   GG CSC DYW
Sbjct: 620 DKNRFHNIVGGVCSCGDYW 638



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 151/327 (46%), Gaps = 22/327 (6%)

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S+++     R +  G+ +H  + ++    S  L   L+ +Y KC  +G+A+ +    E+ 
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFD--EMP 124

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFKYKS 313
           + +VV WT ++S Y +     EA  LF EM+    E N  ++  +++           + 
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 314 CASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
             SI A+      H+++  + + +      I  A+ +F  + E++V   T++I+ YA  G
Sbjct: 185 IHSI-AIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMG 243

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
             ++A+ LF +++  G   + VT+ ++L+A S    ++ G     K+   + ++     Y
Sbjct: 244 LDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHG-----KQVHSHVLRSGQYSY 298

Query: 430 ----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
                 ++D+  + G++  +     SMP    +S W+++L     H   +     FK + 
Sbjct: 299 VVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS-WNAMLVGYSKHGMAREVLELFKLMR 357

Query: 486 ETDPLNDGAHVLLANIYAKA-GRLDDM 511
           E + +   +   LA +   + G+L+DM
Sbjct: 358 EENKVKPDSITYLAVLSGCSHGQLEDM 384


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 291/564 (51%), Gaps = 90/564 (15%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYT--SMGMYREGLGLLSKMGAE-GVSPDEVT 195
           KCG ++E  ++FD +   +V+SW  +++ Y     G  RE + + S M  + GV+P+  T
Sbjct: 309 KCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFT 368

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
              ++ A   L D + G+ +H                            G+  K LG   
Sbjct: 369 FSGVLKACASLPDFDFGEQVH----------------------------GQTIK-LGLSA 399

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM---------ISGMLNQD 306
           ID V       LVS Y KS   + AR+ FD + E+NL+S T++         ++   + D
Sbjct: 400 IDCVG----NGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLD 455

Query: 307 AEFKY--------------KSCASIGALYHGIWVHVYIKK----NQISIDNI-------- 340
            E +Y                 A IG +  G  +H  + K      +S++N         
Sbjct: 456 REVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKC 515

Query: 341 ---ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
              E A  +F+++ + NV  WTS+I  +A  G A KA++LF  M ETG KP+ VT+IA+L
Sbjct: 516 GNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVL 575

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           SACSH GL+DE +   +     + I P+M+HY CMVDLLGR+G L E+  FI SMP   D
Sbjct: 576 SACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDAD 635

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             +W + L +CR H+N KL EHA K + E +P +   ++LL+N+YA  GR +D++ IR  
Sbjct: 636 ALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKN 695

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
           ++   + K+ G S IE    VHKF  GD  +P +++IY  L+E+ + ++  G        
Sbjct: 696 MKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFV 755

Query: 571 ---------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                    ++   QH E+LAVAF LIST     IR+  NLR+CGDCH+ +K  S V  R
Sbjct: 756 LHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGR 815

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           EIV+RD  RFH  + G CSC DYW
Sbjct: 816 EIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 178/399 (44%), Gaps = 34/399 (8%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVSLIS 201
           L+   ++FDK+  ++V++W  MI+     G   E + L  +M  + G  PD  T+  LIS
Sbjct: 211 LESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLIS 270

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
              +++ L +GK LH ++  S + +   +   LVDMY KCG + EA+K+     + E +V
Sbjct: 271 VCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDG--MREHNV 328

Query: 262 VLWTTLVSGYVKSN---ERDEARRLFDEMVERNLISWT-LMISGMLNQDAEFKYKSCASI 317
           + WT LV+GYV+     ER EA R+F  M+ +  ++      SG+L        K+CAS+
Sbjct: 329 MSWTALVNGYVRGGGGYER-EAMRMFSNMLLQGGVAPNCFTFSGVL--------KACASL 379

Query: 318 GALYHGIWVH-VYIKKNQISID--------------NIELAYDLFSEISEKNVYLWTSVI 362
                G  VH   IK    +ID               +E A   F  + EKN+   T V 
Sbjct: 380 PDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVD 439

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
                  +     DL  E+E  G+     T+ +LLS  +  G + +G    +   ++   
Sbjct: 440 DTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKI-GF 498

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +  +     ++ +  + G+ E +      M    +V  W+S++     H     A   F 
Sbjct: 499 RTDLSVNNALISMYSKCGNKEAALQVFNDME-DCNVITWTSIINGFAKHGFASKALELFY 557

Query: 483 HLTETD-PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           ++ ET    ND  ++ + +  +  G +D+  +    +RD
Sbjct: 558 NMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRD 596



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 158/380 (41%), Gaps = 70/380 (18%)

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           +T   L+    + ++  +GK LH  L  S + +   LLN L+ +Y K      A  +   
Sbjct: 53  ITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQS 112

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-----VERNLISWTLMISGMLNQDAE 308
            E  + DVV +++++S +  +    +A  +FD++     V  N   +T +I   L +   
Sbjct: 113 MENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACL-KGGF 171

Query: 309 FKYKSCASIGALYHGIW-VHVYIKKNQI-------SIDNIELAYDLFSEISEKNVYLWTS 360
           FK   C     L  G +  HV +    I       S+ ++E A  +F ++ EKNV  WT 
Sbjct: 172 FKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTL 231

Query: 361 VIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEGYDFLS---KK 416
           +I   A  G+  +AIDLFLEM   +G  PD+ T   L+S C+    +  G +  S   + 
Sbjct: 232 MITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRS 291

Query: 417 SRVYNIKPKMQHYGC-MVDLLGRAGHLEES------------------------------ 445
             V ++       GC +VD+  + G ++E+                              
Sbjct: 292 GLVLDLC-----VGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYE 346

Query: 446 -------ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH-----LTETDPLNDG 493
                  +N +    + P+   +S +L+AC    +    E          L+  D + +G
Sbjct: 347 REAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNG 406

Query: 494 AHVLLANIYAKAGRLDDMSR 513
               L ++YAK+GR++   +
Sbjct: 407 ----LVSVYAKSGRMESARK 422



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 151/327 (46%), Gaps = 45/327 (13%)

Query: 149 LFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSK-MGAEGVSPDEVTMVSLISARTK 205
           +F  + N  RDV+S++++ISC+ +     + + +  + +  +GV P+E    ++I A  K
Sbjct: 109 IFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLK 168

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNY-LVDMYFKCGKIGE---AQKLLGRYEIDEVDV 261
               + G  L  F+ ++    S   +   L+DM+ K   + +   A+K+  +  + E +V
Sbjct: 169 GGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDK--MREKNV 226

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           V WT +++   +    DEA  LF EM V    +     ++G+++         CA I  L
Sbjct: 227 VTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLIS--------VCAEIQFL 278

Query: 321 YHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAY 365
             G  +H ++ ++ + +D                ++ A  +F  + E NV  WT+++  Y
Sbjct: 279 SLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGY 338

Query: 366 AM--AGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
                G+ ++A+ +F  M  + G  P+  TF  +L AC+   L D  +DF  ++     I
Sbjct: 339 VRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA--SLPD--FDF-GEQVHGQTI 393

Query: 423 KPKMQHYGC----MVDLLGRAGHLEES 445
           K  +    C    +V +  ++G +E +
Sbjct: 394 KLGLSAIDCVGNGLVSVYAKSGRMESA 420



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG  +   Q+F+ + + +VI+W ++I+ +   G   + L L   M   GV P++VT
Sbjct: 511 MYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVT 570

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            ++++SA + +  ++     H         I   + +Y  +VD+  + G + EA + +  
Sbjct: 571 YIAVLSACSHVGLIDEAWK-HFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINS 629

Query: 254 YEIDEVDVVLWTTLV 268
              D  D ++W T +
Sbjct: 630 MPFD-ADALVWRTFL 643


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 199/628 (31%), Positives = 322/628 (51%), Gaps = 95/628 (15%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSI 110
           C+S++E ++I ++ I TNL  D  + T++  F        Y                   
Sbjct: 39  CTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSY------------------- 79

Query: 111 IENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS 170
                                           +     LFD++ ++D+I +N M   Y  
Sbjct: 80  --------------------------------MDHAHHLFDQILDKDIILFNIMARGYAR 107

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
                    L  ++   G+ PD+ T  SL+ A    + L  G  LH F  +  +  +  +
Sbjct: 108 SNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYI 167

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
              L++MY +C  +  A+ +    E+++  +V +  +++GY +S++ +EA  LF E+   
Sbjct: 168 CPTLINMYAECNDMNAARGVFD--EMEQPCIVSYNAIITGYARSSQPNEALSLFRELQAS 225

Query: 291 NL-ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK---------NQISID-- 338
           N+  +   M+S ++         SCA +GAL  G W+H Y+KK         N   ID  
Sbjct: 226 NIEPTDVTMLSVIM---------SCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMF 276

Query: 339 ----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
               ++  A  +F  +  ++   W+++I A+A  G   KAI +F EM+  G +PD++TF+
Sbjct: 277 AKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFL 336

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            LL ACSH GLV++G  +    S+ Y I P ++HYGCMVDLLGRAGHL+E+ NF+  + I
Sbjct: 337 GLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEI 396

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
                +W +LL AC  H NV++A+   + + E D  + G +V+L+N+YA+ GR +D++ +
Sbjct: 397 KATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHL 456

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQET 573
           R  ++D G+ K  G S +E    VH+F SGD  +  S E+   L+E+   ++  G + +T
Sbjct: 457 RKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDT 516

Query: 574 SL----------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
           SL                 H E+LA+AFGL++T   TTIR+  NLRICGDCH+  K+ S 
Sbjct: 517 SLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISF 576

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++ R+IVIRD  RFHRF+ G+CSC D+W
Sbjct: 577 IFGRKIVIRDVQRFHRFEDGKCSCGDFW 604


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 198/558 (35%), Positives = 312/558 (55%), Gaps = 46/558 (8%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           NGY  + F   + L+   V  N    L+E   LFDK+P R+V+SW TMIS Y++  +   
Sbjct: 314 NGYHPKTFLTNI-LINMYVKFNL---LEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDR 369

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            + LL+ M  +GV P+  T  S++ A  +L DL   K LH ++ +  ++    + + L+D
Sbjct: 370 AMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALID 426

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           +Y K G++ EA K+    E+   D V+W ++++ + + ++ DEA  L+  M      +  
Sbjct: 427 VYSKMGELLEALKVF--REMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQ 484

Query: 297 LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK-------NQISID------NIELA 343
             ++ +L        ++C S+  L  G   HV++ K       N   +D      ++E A
Sbjct: 485 STLTSVL--------RACTSLSLLELGRQAHVHVLKFDQDLILNNALLDMYCKCGSLEDA 536

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             +F+ +++K+V  W+++IA  A  G + +A++LF  M+  G KP+ +T + +L ACSH 
Sbjct: 537 KFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHA 596

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GLV+EG+ +    + +Y I P  +HYGCM+DLLGRA  L++    I  M   PDV  W +
Sbjct: 597 GLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRT 656

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL ACR  QNV LA +A K + + DP + GA+VLL+NIYA + R +D++ +R  ++  G+
Sbjct: 657 LLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGI 716

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------- 570
           +K+ G S IE    +H F  GD  +P  +EI   LN+    L   G              
Sbjct: 717 RKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEG 776

Query: 571 --QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
             +E SL+ H E+LA+ FG++S  ++ TIRI  NL+ICGDCH F K+ +++  R IVIRD
Sbjct: 777 EQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRD 836

Query: 628 NGRFHRFQGGQCSCRDYW 645
             R+H FQ G CSC DYW
Sbjct: 837 PIRYHHFQDGVCSCGDYW 854



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 132/303 (43%), Gaps = 30/303 (9%)

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            + +L  M   GV  D +T   LI        +  GK +H  +  +       L N L++
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY K   + EAQ L  +  + E +VV WTT++S Y  +   D A RL   M    ++   
Sbjct: 329 MYVKFNLLEEAQVLFDK--MPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNM 386

Query: 297 LMISGMLNQDAEFKYKSCASIGALYH--------GIWVHVYIKKNQISI----DNIELAY 344
              S +L        ++C  +  L          G+   V+++   I +      +  A 
Sbjct: 387 FTFSSVL--------RACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEAL 438

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F E+   +  +W S+IAA+A      +A+ L+  M   G   DQ T  ++L AC+   
Sbjct: 439 KVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLS 498

Query: 405 LVDEGYDFLSKKSRVYNIK--PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           L++     L +++ V+ +K    +     ++D+  + G LE+ A FI +     DV  WS
Sbjct: 499 LLE-----LGRQAHVHVLKFDQDLILNNALLDMYCKCGSLED-AKFIFNRMAKKDVISWS 552

Query: 463 SLL 465
           +++
Sbjct: 553 TMI 555


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 215/654 (32%), Positives = 321/654 (49%), Gaps = 130/654 (19%)

Query: 25  VPKMRISRKFANVCPVSLDVIMVE--RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF 82
           +P+     +  NV P S + + ++  R+ +S  E  ++H+ +I TN        T+V   
Sbjct: 43  IPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLV 102

Query: 83  LVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGK 142
             FT    YAQQI +             +E Q       E F                  
Sbjct: 103 CAFTPSFHYAQQIFK------------CVEKQ-----KPETFV----------------- 128

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
                             WN+ +          + + L  ++    V PD  T  S++ A
Sbjct: 129 ------------------WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRA 170

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
              L DL  G+ LH  +E                      K+G                 
Sbjct: 171 CLNLLDLSNGRILHGVVE----------------------KVGFRS-------------- 194

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            WT++++GYV+  +  EA  LF +M E  +    + +  +L         +CA +GAL  
Sbjct: 195 -WTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVL--------AACADLGALDL 245

Query: 323 GIWVHVYIK----KNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G+ +H Y      K  + I N           +E A  +F E+ E+ V  W+++I   AM
Sbjct: 246 GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAM 305

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G A++A+ LF +M + G +P+ VTFI LL ACSH GL+ EG  F +  +R Y I P+++
Sbjct: 306 HGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIE 365

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HYGCMVDLL RAG L E+  FI +MP+ P+  +W +LL ACR H+NV++AE A KHL E 
Sbjct: 366 HYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLEL 425

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           DPLNDG +V+L+NIYA+AGR +D +R+R  ++D  +KK  G+S I   G VH+F +G+  
Sbjct: 426 DPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEES 485

Query: 548 NPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTS 591
           +P +E+I+    E+   ++ +G +  TS+               +H E+LA+ FGL++T 
Sbjct: 486 HPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTP 545

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +T IRI+ NLRIC DCHS  K+ S + NREIV+RD  RFH F    CSCRDYW
Sbjct: 546 AETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 308/569 (54%), Gaps = 72/569 (12%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGL---LSKMGAEGVSPDEVTMVSLISART 204
           ++F+++P R+  SWNT+I  ++     +  + +      M  E + P+  T  S++ A  
Sbjct: 73  KIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACA 132

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID------- 257
           K   ++ GK +H    +        +++ LV MY  CG + +A  L  +  I+       
Sbjct: 133 KTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMI 192

Query: 258 -----EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-- 310
                + +VVLW  ++ GY++  +   AR LFD+M +R+++SW  MISG  +Q+  FK  
Sbjct: 193 DRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISG-YSQNGFFKDA 251

Query: 311 -----------------------YKSCASIGALYHGIWVHVYIKKNQISIDN-------- 339
                                    + + +G+L  G W+H+Y + + I ID+        
Sbjct: 252 VEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 311

Query: 340 -------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  IE A  +F  +  +NV  W+++I  +A+ G A  AID F +M + G +P  V 
Sbjct: 312 MYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 371

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           +I LL+ACSH GLV+EG  + S+   V  ++P+++HYGCMVDLLGR G L+E+  FI +M
Sbjct: 372 YINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNM 431

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           PI PD  IW +LL ACR H+NV++ +     L +  P + GA+V L+N+YA  G   ++S
Sbjct: 432 PIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 491

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE 572
            +R+++++M ++K  G S I+  G +H+F   D  +P ++EI  ML EI   L+  G + 
Sbjct: 492 EMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRP 551

Query: 573 TSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
            + Q                H E++A AFGLISTS    IRIV NLRIC DCHS +K+ S
Sbjct: 552 ITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLIS 611

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +VY R+I +RD  RFH FQ G CSC DYW
Sbjct: 612 KVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 29/263 (11%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMV 197
           + G  K    LFDK+  R V+SWNTMIS Y+  G +++ + +  +M   E + P+ VT+V
Sbjct: 213 RLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLV 272

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S++ A ++L  LE+G+ LHL+ E+S ++I   L + L+DMY KCG I +A  +  R  + 
Sbjct: 273 SVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFER--LP 330

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
             +V+ W+ +++G+    +  +A   F +M +  +    +    +L         +C+  
Sbjct: 331 RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT--------ACSHA 382

Query: 318 GALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           G +  G     Y  +  +S+D +           E  +  +  ++      G   +A + 
Sbjct: 383 GLVEEG---RRYFSQ-MVSVDGL-----------EPRIEHYGCMVDLLGRLGLLDEAEEF 427

Query: 378 FLEMEETGTKPDQVTFIALLSAC 400
            L M     KPD V + ALL AC
Sbjct: 428 ILNMP---IKPDDVIWKALLGAC 447



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG +++   +F++LP  +VI+W+ MI+ +   G   + +    KM   GV P +V 
Sbjct: 312 MYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 371

Query: 196 MVSLISARTKLRDLEMGK 213
            ++L++A +    +E G+
Sbjct: 372 YINLLTACSHAGLVEEGR 389


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/555 (34%), Positives = 297/555 (53%), Gaps = 60/555 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F+ +P RDVISW +M SCY + G+ RE LG   KMG  G  P+ VT+ S++ A T L+D
Sbjct: 135 VFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKD 194

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L+ G+ +H F+  + M  +  + + LV+MY  C  I +AQ +     +   D V W  L+
Sbjct: 195 LKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFD--SMSRRDTVSWNVLI 252

Query: 269 SGYVKSNERDEARRLFDEMVER----NLISWTLMISGMLN--------------QDAEFK 310
           + Y  + E ++   +F  M+      N  SW  +I G +               Q++ FK
Sbjct: 253 TAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFK 312

Query: 311 ---------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
                      +C ++ +L  G  +H YI ++    D               ++EL+  +
Sbjct: 313 PNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRV 372

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           FS +++++   W ++I A +M G+ ++A+ LF EM ++G +P+ VTF  +LS CSH  LV
Sbjct: 373 FSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLV 432

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           DEG       SR ++++P   H+ CMVD+L RAG LEE+  FI  MPI P    W +LL 
Sbjct: 433 DEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLG 492

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
            CR ++NV+L   A   L E +  N G +VLL+NI   A    + S  R  +RD G+ K 
Sbjct: 493 GCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKN 552

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN-------------EIEMTLQ---QQGL 570
            G S I+    VH F  GD  N  S+EIY  L+               +  LQ   Q+  
Sbjct: 553 PGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEK 612

Query: 571 QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           +E    H E+LAVAFG+++ + +++IR+  NLRICGDCH+ +K  +++   +I++RD+ R
Sbjct: 613 EEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLR 672

Query: 631 FHRFQGGQCSCRDYW 645
           FH F+ G CSC+D+W
Sbjct: 673 FHHFRDGLCSCQDFW 687



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 168/408 (41%), Gaps = 83/408 (20%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSL 199
           G L+    LFDK+P  D+ +W  +IS  T  G   E +   +    +  V PD++ ++S+
Sbjct: 25  GDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSV 84

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKI---SGSLL-NYLVDMYFKCGKIGEAQKLLGRYE 255
             A   LRD+   K +H    E  ++    S  LL N L+DMY KC +  E  +L+  +E
Sbjct: 85  AKACASLRDVMNAKRVH----EDAIRFGFCSDVLLGNALIDMYGKC-RCSEGARLV--FE 137

Query: 256 -IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            +   DV+ WT++ S YV      EA   F +M        ++ +S +L         +C
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSIL--------PAC 189

Query: 315 ASIGALYHGIWVHVYIKKNQ------------------ISIDNIELAYD----------- 345
             +  L  G  VH ++ +N                   +SI   +L +D           
Sbjct: 190 TDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWN 249

Query: 346 ---------------------LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
                                + SE    N   W +VI      G  +KA+++   M+ +
Sbjct: 250 VLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNS 309

Query: 385 GTKPDQVTFIALLSACSH-----GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
           G KP+Q+T  ++L AC++     GG    GY F     R +  +  +     +V +  + 
Sbjct: 310 GFKPNQITITSVLPACTNLESLRGGKQIHGYIF-----RHWFFQ-DLTTTTALVFMYAKC 363

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           G LE S   + SM    D   W++++ A   H N + A   F+ + ++
Sbjct: 364 GDLELSRR-VFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDS 410


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 314/560 (56%), Gaps = 50/560 (8%)

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
           GY  +VF I   L+T   +  KC K +   Q+FD++P+++ +SW+ +I         +EG
Sbjct: 40  GYQSQVF-ISNSLIT---MYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEG 95

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
             L  +M +EG  P   +  ++++A   +R  E   +++  + E+ +    S+ +    M
Sbjct: 96  FSLFRQMLSEGSRP---SRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGM 152

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297
           + +CG++  A+KL     I   D+V W T +  YVK++   EA  L  +M+ + +    +
Sbjct: 153 FARCGRVEVARKLFD--GIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAI 210

Query: 298 MISGMLNQDAEFKYKSCASIGA-----LYHGIWVHVYIKKNQISID-----------NIE 341
            + G++        ++C+++ +     + HGI    +     ++++           ++ 
Sbjct: 211 TLLGVI--------RACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLT 262

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  +F  + E+N+  W+++I+ Y M G  ++A++LF +M+ +  KPD +TF+++LSACS
Sbjct: 263 YARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKAS-VKPDHITFVSILSACS 321

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GLV EG++  +  +R + + P+ +HY CMVD+LGRAG L+E+ +FI  MP+ P+ ++W
Sbjct: 322 HSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVW 381

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            +LL ACR H NV LAE   + L + DP N G +V+L NIY   G+  +   IR  +++ 
Sbjct: 382 GALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNR 441

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------- 570
           G+KK  GYS+IE    ++ F +GD  +P ++ IY  L  +   ++Q+G            
Sbjct: 442 GVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDV 501

Query: 571 ----QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
               +E+ L  H E+LA+ FGL++    + IRI  NLR+CGDCH+  K  S+V  REIV+
Sbjct: 502 DEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVV 561

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F+ G CSCRDYW
Sbjct: 562 RDAHRFHHFKNGACSCRDYW 581



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 151/374 (40%), Gaps = 45/374 (12%)

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G+ PD  T   +I A + LR  E G  +H  + +   +    + N L+ MY KC K   +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV-ERNLISWTLMISGML--- 303
           +++    E+ + + V W+ ++   ++ +   E   LF +M+ E +  S   +++ M    
Sbjct: 65  RQVFD--EMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVR 122

Query: 304 -NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVI 362
            +++A+  Y+     G L     V             +E+A  LF  I  K++  W + I
Sbjct: 123 SHEEADDVYRVVVENG-LDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTI 181

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH----------GGLVDEGY-- 410
            AY  A    +A+ L  +M   G  PD +T + ++ ACS            G++  G+  
Sbjct: 182 EAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFY 241

Query: 411 -DFLSKKSRVYNIKPK-------------MQH-----YGCMVDLLGRAGHLEESANFITS 451
              L+ ++ + ++  K             MQ      +  M+   G  G   E+ N    
Sbjct: 242 NQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQ 301

Query: 452 M--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA--HVLLANIYAKAGR 507
           M   + PD   + S+L AC     V      F  +     +      +  + +I  +AG+
Sbjct: 302 MKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGK 361

Query: 508 LDDMSRI--RMKLR 519
           LD+      RM +R
Sbjct: 362 LDEACDFIERMPVR 375



 Score = 43.1 bits (100), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 38/196 (19%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIH--SHLITTNLMRDP--QIST 77
           LGL+ +M +   F    P ++ ++ V R+CS++  F+  H    +ITT    +    + T
Sbjct: 194 LGLLKQMMLQGIF----PDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVET 249

Query: 78  QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLL 137
            + +  V  G L YA+++     E  I  W+++I    ++G+ +E               
Sbjct: 250 ALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREAL------------- 296

Query: 138 NKCGKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDE 193
                      LFD++      D I++ +++S  +  G+  EG    + M  + GV+P  
Sbjct: 297 ----------NLFDQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRP 346

Query: 194 ---VTMVSLISARTKL 206
                MV ++    KL
Sbjct: 347 EHYACMVDILGRAGKL 362


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/567 (32%), Positives = 293/567 (51%), Gaps = 76/567 (13%)

Query: 148 QLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
           +LFD++P+  +D + +  +I C   +    + L    +M    +  D V ++  + A +K
Sbjct: 70  KLFDRIPHSHKDSVDYTALIRCSHPL----DALRFYLQMRQRALPLDGVALICALGACSK 125

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           L D  +   +H+ + +        +LN ++D Y KCG +GEA+++    EI+E  VV WT
Sbjct: 126 LGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVF--EEIEEPSVVSWT 183

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD---------------AEFK 310
            ++ G VK    +  + +FDEM ERN ++WT++I G +                    F 
Sbjct: 184 VVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFG 243

Query: 311 Y-----------KSCASIGALYHGIWVHVYIKKN----------------QISIDNIELA 343
           +            +C+  G +  G WVH Y  K                       I  A
Sbjct: 244 FGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAA 303

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             +F  +  +NV  W +++   AM G  +  +++F  M E   KPD VTF+ALLS+CSH 
Sbjct: 304 LMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEE-VKPDAVTFMALLSSCSHS 362

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GLV++G+ +     R Y I+P+++HY CMVDLLGRAG LEE+ + +  +PIPP+  +  S
Sbjct: 363 GLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGS 422

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL AC  H  ++L E   + L + DPLN   H+LL+N+YA  G+ D  + +R  L++ G+
Sbjct: 423 LLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGI 482

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-------------- 569
           +K  G S I   G +H+F +GD  +P + +IY+ L+++   L+  G              
Sbjct: 483 RKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCS 542

Query: 570 -----------LQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                      +++    H E+LA+ FGL+ST   + + I  NLRIC DCHS +K+ S +
Sbjct: 543 NGDDCMEAFEEVEQVLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHSAIKIASDI 602

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
           Y REIV+RD  RFH F+ G CSC DYW
Sbjct: 603 YKREIVVRDRYRFHSFKQGSCSCSDYW 629



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 7/168 (4%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG++     +F  +P R+V++WN M+      GM +  + + + M  E V PD VT ++
Sbjct: 296 KCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACM-VEEVKPDAVTFMA 354

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           L+S+ +    +E G      LE +   I   + +Y  +VD+  + G++ EA+ L+ +  I
Sbjct: 355 LLSSCSHSGLVEQGWQYFHDLERA-YGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPI 413

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMISGM 302
              +VVL + L + Y     R    ++  E+V+ + ++  + +++S M
Sbjct: 414 PPNEVVLGSLLGACYAHGKLR-LGEKIMRELVQMDPLNTEYHILLSNM 460


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 207/681 (30%), Positives = 334/681 (49%), Gaps = 77/681 (11%)

Query: 39  PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + +  +  +C+SI +  +   +HS+L+   +  D  I   + +  V  G +  A +I
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEI 301

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV---------LLNKC------ 140
            + GD   + +WN ++          + F ++  +V   V         LL  C      
Sbjct: 302 FKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEI 361

Query: 141 --------------------------------GKLKEVCQLFDKLPNRDVISWNTMISCY 168
                                           G L +  ++ + L  +DV+SW +MI+ Y
Sbjct: 362 NLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGY 421

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
                 +E L     M   G+ PD + + S ISA   ++ +  G+ +H  +  S      
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADV 481

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM- 287
           S+ N LV++Y +CG+  EA  L     I+  D + W  +VSG+ +S   +EA  +F +M 
Sbjct: 482 SIWNALVNLYARCGRSKEAFSLF--EAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMY 539

Query: 288 ---VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNI 340
              V+ N+ ++   IS   N  A+ K         +  G      +    IS+     +I
Sbjct: 540 QAGVKYNVFTFVSSISASANL-ADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSI 598

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           E A   F E+SE+N   W ++I + +  G   +A+DLF +M++ G KP+ VTFI +L+AC
Sbjct: 599 EDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAAC 658

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLV+EG  +    S  + I P+  HY C+VD+LGRAG L+ +  F+  MP+  +  +
Sbjct: 659 SHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMV 718

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           W +LL ACR H+N+++ E A K+L E +P +  ++VLL+N YA  G+      +R  ++D
Sbjct: 719 WRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKD 778

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------- 570
            G++K+ G S IE    VH F  GD  +P + +IY  L +++  L + G           
Sbjct: 779 RGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHE 838

Query: 571 ------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                   T+  H E+LAVAFGL+S      +R++ NLR+C DCH++MK TS+V  REIV
Sbjct: 839 KEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIV 898

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD  RFH F  G CSC D+W
Sbjct: 899 LRDVYRFHHFNNGNCSCGDFW 919



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 172/369 (46%), Gaps = 37/369 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G ++   ++F++L  RD +SW  M+S Y   G+  E +GL  +M   GV P    
Sbjct: 86  LYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYV 145

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S++SA TK    E G+ +H  + +        + N L+ +Y + G +  A+++    E
Sbjct: 146 LSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFS--E 203

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT---LMISGMLNQDAEFKYK 312
           +   D V + TL+S + +    + A  +F+EM    L  WT   + I+ +L         
Sbjct: 204 MPYCDRVTFNTLISRHAQCGNGESALEIFEEM---RLSGWTPDCVTIASLL--------A 252

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNI------EL---------AYDLFSEISEKNVYL 357
           +CASIG L  G  +H Y+ K  +S D I      +L         A ++F      NV L
Sbjct: 253 ACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVL 312

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--YDFLSK 415
           W  ++ AY       K+ DLF +M   G +P++ T+  LL  C++ G ++ G     LS 
Sbjct: 313 WNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSI 372

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
           K+     +  M   G ++D+  + G L+++   +  +    DV  W+S++     H+  K
Sbjct: 373 KT---GFESDMYVSGVLIDMYSKYGWLDKARRILEVLE-AKDVVSWTSMIAGYVQHEFCK 428

Query: 476 LAEHAFKHL 484
            A   FK +
Sbjct: 429 EALETFKDM 437



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 167/380 (43%), Gaps = 61/380 (16%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           Q+ +QG   E  + N++I             A+YL          + G L    ++F ++
Sbjct: 168 QVYKQGSCSETVVGNALI-------------ALYL----------RFGSLSLAERVFSEM 204

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P  D +++NT+IS +   G     L +  +M   G +PD VT+ SL++A   + DL  GK
Sbjct: 205 PYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGK 264

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            LH +L ++ M     +   L+D+Y KCG I EA ++      D  +VVLW  ++  Y +
Sbjct: 265 QLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK--SGDRTNVVLWNLMLVAYGQ 322

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYHGIWVHVY 329
            ++  ++  LF +MV   +            +  EF Y    ++C   G +  G  +H+ 
Sbjct: 323 ISDLAKSFDLFCQMVAAGV------------RPNEFTYPCLLRTCTYAGEINLGEQIHLL 370

Query: 330 IKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
             K     D                ++ A  +   +  K+V  WTS+IA Y      ++A
Sbjct: 371 SIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEA 430

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY--NIKPKMQHYGCM 432
           ++ F +M+  G  PD +   + +SAC+    + +G       SRVY       +  +  +
Sbjct: 431 LETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQI---HSRVYVSGYSADVSIWNAL 487

Query: 433 VDLLGRAGHLEESANFITSM 452
           V+L  R G  +E+ +   ++
Sbjct: 488 VNLYARCGRSKEAFSLFEAI 507



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 125/331 (37%), Gaps = 80/331 (24%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDAEFKY---- 311
           D +    L+  Y K      ARR+F+++  R+ +SW  M+SG     L ++A   Y    
Sbjct: 76  DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMH 135

Query: 312 ---------------KSCASIGALYHGIWVHVYIKKNQ---------------ISIDNIE 341
                           +C        G  VH  + K                 +   ++ 
Sbjct: 136 CSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLS 195

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           LA  +FSE+   +   + ++I+ +A  G+ + A+++F EM  +G  PD VT  +LL+AC+
Sbjct: 196 LAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACA 255

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS---------- 451
             G +++G    S   +   + P     G ++DL  + G + E+     S          
Sbjct: 256 SIGDLNKGKQLHSYLLKA-GMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWN 314

Query: 452 ------------------------MPIPPDVSIWSSLLRACRCHQNVKLAEH----AFKH 483
                                     + P+   +  LLR C     + L E     + K 
Sbjct: 315 LMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKT 374

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
             E+D    G   +L ++Y+K G LD   RI
Sbjct: 375 GFESDMYVSG---VLIDMYSKYGWLDKARRI 402


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 203/705 (28%), Positives = 349/705 (49%), Gaps = 95/705 (13%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQ 78
           +GL  +M +S     + P    +  +  +C+ + +  R   IH +LI      DP  +  
Sbjct: 243 VGLFYEMVLS----GIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANA 298

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY----------- 127
           + +     GDL  A  +  +  +P+I  WN++I   +++ + ++   +            
Sbjct: 299 LVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPN 358

Query: 128 -----------------------------------LYLVTRTV-LLNKCGKLKEVCQLFD 151
                                              L++    V + +KC  L++    F+
Sbjct: 359 IFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFN 418

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
            LP +D+I+WN +IS Y+      E L L  +M  EG+  ++ T+ +++ +   L+ + +
Sbjct: 419 LLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHV 478

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
            + +H    +S       ++N L+D Y KC  + +A+++     I   D+V +T++++ Y
Sbjct: 479 CRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIG--DLVSFTSMITAY 536

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
            +  + +EA +LF EM +  L     + S +LN        +CA++ A   G  +HV+I 
Sbjct: 537 AQYGQGEEALKLFLEMQDMELKPDRFVCSSLLN--------ACANLSAFEQGKQLHVHIL 588

Query: 332 KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           K    +D               +I+ A   FSE++E+ +  W+++I   A  GH ++A+ 
Sbjct: 589 KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQ 648

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF +M + G  P+ +T +++L AC+H GLV E   +      ++  KP  +HY CM+DLL
Sbjct: 649 LFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLL 708

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG + E+   +  MP   + S+W +LL A R H++V+L   A + L   +P   G HV
Sbjct: 709 GRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHV 768

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LLANIYA AG+ ++++ +R  +RD  +KK+ G S IE    V+ F  GD  +  S+EIY 
Sbjct: 769 LLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYA 828

Query: 557 MLNEIEMTLQQQG---LQETSL-------------QHRERLAVAFGLISTSEKTTIRIVN 600
            L+E+   + + G   + E  L              H E+LAVAFGLI+T +   IR+  
Sbjct: 829 KLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKK 888

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCH+  K   ++ +REI++RD  RFH F+ G CSC DYW
Sbjct: 889 NLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 138/600 (23%), Positives = 238/600 (39%), Gaps = 133/600 (22%)

Query: 35  ANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
            N  P S+    +   C +        +IH+H+  + L  DP I   +        + GY
Sbjct: 50  GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGY 109

Query: 92  AQQIIRQGDEPEIKIWNSII----ENQL-------------------------------- 115
           A++++ +  EP++  W+++I    +N L                                
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 116 ---------------INGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVIS 160
                          ++G+  +VF       T  V+  KC +  +  +LFD++P R+V+S
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVAN----TLVVMYAKCDEFLDSKRLFDEIPERNVVS 225

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           WN + SCY  +    E +GL  +M   G+ P+E ++ S+++A T LRD   GK +H +L 
Sbjct: 226 WNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLI 285

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           +          N LVDMY K G + +A  +  +  I + D+V W  +++G V     ++A
Sbjct: 286 KLGYDWDPFSANALVDMYAKVGDLADAISVFEK--IKQPDIVSWNAVIAGCVLHEHHEQA 343

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI----- 335
             L  +M    +      +S  L        K+CA +G    G  +H  + K  +     
Sbjct: 344 LELLGQMKRSGICPNIFTLSSAL--------KACAGMGLKELGRQLHSSLMKMDMESDLF 395

Query: 336 ----------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
                       D +E A   F+ + EK++  W ++I+ Y+      +A+ LF+EM + G
Sbjct: 396 VSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEG 455

Query: 386 TKPDQVTFIALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYG---- 430
              +Q T   +L + +           HG  V  G+      S +Y +   +  YG    
Sbjct: 456 IGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGF-----HSDIYVVNSLIDSYGKCSH 510

Query: 431 --------------------CMVDLLGRAGHLEESANF---ITSMPIPPDVSIWSSLLRA 467
                                M+    + G  EE+      +  M + PD  + SSLL A
Sbjct: 511 VEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNA 570

Query: 468 C----RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           C       Q  +L  H  K+    D     +   L N+YAK G +DD  R   +L + G+
Sbjct: 571 CANLSAFEQGKQLHVHILKYGFVLDIFAGNS---LVNMYAKCGSIDDAGRAFSELTERGI 627


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 189/538 (35%), Positives = 296/538 (55%), Gaps = 43/538 (7%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +    QLFD++       WNT++  Y   G+  + + +  KM   GV PD  T   +I
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A  +L +L  G  +H  + +  ++   ++   L+ MY K G++G A+ L G   + E D
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFG--SMVERD 200

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           +V W  L++  V++    +A + F EM    +   ++ I   L+        +C  +G L
Sbjct: 201 LVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALS--------ACGHLGCL 252

Query: 321 YHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAY 365
             G  ++ + ++  I  +               +++ A +LF E+ ++NV  W++VI  Y
Sbjct: 253 ETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGY 312

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS--KKSRVYNIK 423
           A+ G ++KA+ LF  M+  G +P+ VTF+A+LSACSH G V+EG+ + +   +S   NI+
Sbjct: 313 AVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQ 372

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P+ +HY CMVDLLGR+GHLEE+ NFI  MPI  D  IW +LL AC  HQN+KL +H    
Sbjct: 373 PRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADL 432

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L E  P     HVLL+N+YA AGR   + ++R +++  G +K   YS +E  G +H    
Sbjct: 433 LFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYG 492

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGL 587
           GD  +P S  I   L ++   ++  G                +E++L  H E+LA+AF L
Sbjct: 493 GDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSL 552

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I+ S K  IR++ NLRICGDCH+F K+ S++  REI++RD  RFH F+ G CSC+D+W
Sbjct: 553 INGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 53/266 (19%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLL 137
           GD+ YA+Q+  +  +P   +WN+I++  + NG P +  ++Y  +          T   ++
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 138 NKCGKLKEV------------------------------------CQ--LFDKLPNRDVI 159
             C +L E+                                    C   LF  +  RD++
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           +WN +I+     G   + L    +MG  G+ PD VT+VS +SA   L  LE G+ ++ F 
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
            E  +  +  + N  +DM  KCG + +A  L    E+ + +V+ W+T++ GY  + E ++
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFD--EMPQRNVISWSTVIGGYAVNGESEK 320

Query: 280 ARRLFDEM----VERNLISWTLMISG 301
           A  LF  M    V+ N +++  ++S 
Sbjct: 321 ALALFSRMKNQGVQPNYVTFLAVLSA 346


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/578 (31%), Positives = 320/578 (55%), Gaps = 57/578 (9%)

Query: 106 IWNSIIENQLI-NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164
           ++  ++  Q++  G+  ++F +   LV    +  KCG++ +  ++FD++  RDV+ W  M
Sbjct: 149 VFGEVVHGQVVRTGFGSDLF-VEAALVD---MYAKCGEIGDAHEVFDRMLIRDVVCWTAM 204

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           I+ Y       + L L  KM  EG   DE+T +S+ SA  +L D  M  ++H +   +  
Sbjct: 205 ITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGF 264

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
               S+ N +V MY KCG +  A+ +  R E  E + + W +++SGY ++    +A  LF
Sbjct: 265 IGDVSVGNSIVGMYAKCGNVERARLVFDRME--ERNGISWNSMLSGYTQNGRPTDALSLF 322

Query: 285 DEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-- 338
           ++M     + N ++  +M+S            +C+ +G+ + G  +H ++  +++ ID  
Sbjct: 323 NQMQASECDPNPVTALIMVS------------ACSYLGSKHLGRKLHNFVISSKMDIDTT 370

Query: 339 -------------NIELAYDLFS--EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                        +++ A ++F+  E+ E++V  W  +I+ Y + GH ++A++LF  M+ 
Sbjct: 371 LRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQV 430

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            G +P+ +TF ++LSACSH GL+DEG    +  +++ +++P+M+HY CMVD+LGRAG L 
Sbjct: 431 EGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLN 489

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           E+   I  +P  P   +W +LL ACR H N +L E A  +L + +P + G +VL++NIYA
Sbjct: 490 EAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYA 549

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
            + +  ++  +R  ++  GLKK   +S+IE G  VH F + D  +P+  E+Y  +  + +
Sbjct: 550 ASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAI 609

Query: 564 TLQQQG--------LQETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
            ++  G        L +   +        H E+LAVAFG++   +   I++  NLR+C D
Sbjct: 610 EMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSD 669

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CH   K  S +Y R+I++RD  RFH FQGG+CSC DYW
Sbjct: 670 CHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 30/170 (17%)

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------H 402
           N +L  +++ AYA AG + +AIDL++ M+  G   +  T+  +L  C+           H
Sbjct: 96  NSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVH 155

Query: 403 GGLVDEGY--DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           G +V  G+  D   + +              +VD+  + G + ++      M I  DV  
Sbjct: 156 GQVVRTGFGSDLFVEAA--------------LVDMYAKCGEIGDAHEVFDRMLI-RDVVC 200

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
           W++++      +    A   F+ + E   L D   +   ++ +  G+L D
Sbjct: 201 WTAMITLYEQAERPLKALMLFRKMQEEGFLGD--EITAISVASAVGQLGD 248


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/595 (33%), Positives = 325/595 (54%), Gaps = 72/595 (12%)

Query: 111 IENQLI-NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           I  QLI NG+ Q+ F ++  L +     +KC  +    ++F    N +V  +  +I  + 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRS----CSKCHAIDYASRIFQYTHNPNVYLYTALIDGFV 123

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
           S G Y E + L S+M  E + PD   M S++ A      L  G+ +H       +K+ G 
Sbjct: 124 SSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVH----SRALKL-GF 178

Query: 230 LLNYLV-----DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
             N LV     ++Y KCG++G+A+++   +E    DVV  T ++S Y      +EA  +F
Sbjct: 179 SSNRLVRLRIMELYGKCGELGDARRV---FEEMPEDVVASTVMISSYSDQGLVEEAGAVF 235

Query: 285 DEMVERNLISWTLMISGMLNQDA-------------------EFK----YKSCASIGALY 321
             +  ++ + WT MI G +  +                    EF       +C+ +GAL 
Sbjct: 236 SRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALE 295

Query: 322 HGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
            G WVH Y++K +I ++               +I+ A  +F E+ +++V  + ++I+  +
Sbjct: 296 IGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLS 355

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
           M G +++AI+LF  M     +P  VTF+ +L+ACSHGGLVD G++     +R Y ++P++
Sbjct: 356 MNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQI 415

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HYGCMVDLLGR G LEE+ + I +M + PD  +  +LL AC+ H+N++L E   K L +
Sbjct: 416 EHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELED 475

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
               + G +VLL+++YA +G+  + +++R K+++ G++K+ G S IE    +H+F  GD+
Sbjct: 476 RGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDL 535

Query: 547 FNPHSEEIYLMLN-------------EIEMTLQ--QQGLQETSLQ-HRERLAVAFGLIST 590
            +P  E IY  L              E E+ LQ  + G +E +L  H ERLA+ +GLIST
Sbjct: 536 RHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLIST 595

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              T IR++ NLR+C DCHS +K+ +++  R+IV+RD  RFH F+ G CSC DYW
Sbjct: 596 EPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 156/360 (43%), Gaps = 65/360 (18%)

Query: 49  RSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           ++C S   + E   +HS  +      +  +  ++ E     G+LG A+++  +   PE  
Sbjct: 155 KACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEE--MPEDV 212

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           + +++    +I+ Y  +                  G ++E   +F ++  +D + W  MI
Sbjct: 213 VASTV----MISSYSDQ------------------GLVEEAGAVFSRVRRKDTVCWTAMI 250

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
             +         L     M  E V P+E T+V ++SA ++L  LE+G+ +H ++ +  ++
Sbjct: 251 DGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIE 310

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           ++  + N L++MY +CG I EAQ +    E+ + DV+ + T++SG   + +  +A  LF 
Sbjct: 311 LNLFVGNALINMYSRCGSIDEAQTVFD--EMKDRDVITYNTMISGLSMNGKSRQAIELFR 368

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345
            MV R L    +   G+LN              A  HG  V              +  ++
Sbjct: 369 VMVGRRLRPTNVTFVGVLN--------------ACSHGGLV--------------DFGFE 400

Query: 346 LFSEIS-----EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           +F  ++     E  +  +  ++      G  ++A DL   M+ T   PD +    LLSAC
Sbjct: 401 IFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMT---PDHIMLGTLLSAC 457


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/529 (36%), Positives = 297/529 (56%), Gaps = 42/529 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           Q+FD+ P +   +W+++IS +         L    +M  +GV PD+    S   A   LR
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
             ++GK++H    ++       + + LVDMY KCG+IG+A+ L    E+ E +VV W+ +
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFD--EMPERNVVSWSGM 198

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS-----IGALYH 322
           + GY + ++  EA  LF + +  ++       S ++        + C+S     +G L H
Sbjct: 199 IYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVI--------RVCSSSTFLELGKLIH 250

Query: 323 GIWVHV------YIKKNQISIDN----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
           G+ + +      ++    IS+ +    IE AY +F EI  +N+ LW S++ A A   H Q
Sbjct: 251 GLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQ 310

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +   LF EM   G KP+ ++F+++L ACSH GLV++G ++ S   R Y I+P+ +HY  +
Sbjct: 311 RVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASL 369

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAG L+E+ + I  MP+ P  S+W +LL  CR H++ ++A      + E D  + 
Sbjct: 370 VDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSS 429

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G HVLL+N YA AGR ++ +R+R  LRD G+KK+ G S +E+G  VH FT+GD  +    
Sbjct: 430 GLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWV 489

Query: 553 EIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTI 596
           EIY  L E+E  +++ G                  ET   H ERLA+AFGLI+      I
Sbjct: 490 EIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPI 549

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R++ NLR+CGDCH+ +K  S+   R +++RDN RFHRF+ G+CSC DYW
Sbjct: 550 RVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 77/154 (50%), Gaps = 1/154 (0%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG ++   Q+FD++P R++  WN+M+         +   GL  +MG  G+ P+ ++
Sbjct: 271 LYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIS 330

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            +S++ A +    +E G+     + +  ++        LVD+  + GK+ EA  ++ +  
Sbjct: 331 FLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMP 390

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           +   + V W  L++G     + + A  + D ++E
Sbjct: 391 MRPTESV-WGALLTGCRIHKDTEMAAFVADRILE 423


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 192/580 (33%), Positives = 303/580 (52%), Gaps = 94/580 (16%)

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK--MGAEGVSPDEVTMVSLISARTKLR 207
           F   PN  + ++N ++  ++    +   +   +   +     +PDE T  S++ A   L 
Sbjct: 84  FLSFPN--IFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLA 141

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-------- 259
            +  G+ +H F+ +   + +  + N LVD+YFK G    AQKL     + +V        
Sbjct: 142 QVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLIS 201

Query: 260 ---------------------DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
                                ++V W+T++SGY +    +EAR+LF+ M  RN++SW  M
Sbjct: 202 GYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAM 261

Query: 299 ISGMLNQDAEFKY---------------------------KSCASIGALYHGIWVHVYIK 331
           I+G    +   KY                            +CA +GAL  G W+H +I+
Sbjct: 262 IAGYAQNE---KYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIR 318

Query: 332 KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           +N+I +                 +  A  +F E+ E++V  W+ +I   AM G+A +A +
Sbjct: 319 RNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFN 378

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
            F EM E G +P+ ++F+ LL+AC+H GLVD+G ++     +VY I PK++HYGC+VDLL
Sbjct: 379 FFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLL 438

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
            RAG L+++ + I SMP+ P+V +W +LL  CR +++ +  E     + E D  + G+ V
Sbjct: 439 SRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLV 498

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
            LAN+YA  GRLDD +  R+++RD    K  G S IE    V++F  GD  +P S  IY 
Sbjct: 499 YLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYS 558

Query: 557 MLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVN 600
           M+ E++  ++  G                +E +L  H E+LA+AFGLI+TSE TTIRIV 
Sbjct: 559 MIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVK 618

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           NLR+C DCH  +K+ S++  REIV+RD  RFH F+ G+CS
Sbjct: 619 NLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 285/541 (52%), Gaps = 44/541 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCGK+K    LF +    D++++N MI  YTS G     L L  ++   G      T
Sbjct: 265 LYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSST 324

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +VSL+     L    +   +H +  +S      S+   L  +Y K  +I  A+KL    E
Sbjct: 325 LVSLVPVSGHLM---LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFD--E 379

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
             E  +  W  ++SGY ++   ++A  LF EM +       + I+ +L+        +CA
Sbjct: 380 SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILS--------ACA 431

Query: 316 SIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTS 360
            +GAL  G WVH           +Y+    I +     +I  A  LF  +++KN   W +
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+ Y + G  Q+A+++F EM  +G  P  VTF+ +L ACSH GLV EG +  +     Y
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
             +P ++HY CMVD+LGRAGHL+ +  FI +M I P  S+W +LL ACR H++  LA   
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L E DP N G HVLL+NI++        + +R   +   L K  GY+LIE G   H 
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSLQ---------------HRERLAVA 584
           FTSGD  +P  +EIY  L ++E  +++ G Q ET L                H ERLA+A
Sbjct: 672 FTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI+T   T IRI+ NLR+C DCH+  K+ S++  R IV+RD  RFH F+ G CSC DY
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791

Query: 645 W 645
           W
Sbjct: 792 W 792



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/491 (21%), Positives = 204/491 (41%), Gaps = 87/491 (17%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           +  +SI    + H+ +I      D  + T++ + L   G + YA+ I      P++ ++N
Sbjct: 28  KRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFN 87

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRT-------------------------------VLL 137
            ++    +N  P    +++ +L   T                                ++
Sbjct: 88  VLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVV 147

Query: 138 NKCG-----------------KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           + C                  ++++  ++FD++P +D I WNTMIS Y    MY E + +
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207

Query: 181 LSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
              +  E  +  D  T++ ++ A  +L++L +G  +H    ++       +L   + +Y 
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYS 267

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
           KCGKI     L    E  + D+V +  ++ GY  + E + +  LF E          LM+
Sbjct: 268 KCGKIKMGSALF--REFRKPDIVAYNAMIHGYTSNGETELSLSLFKE----------LML 315

Query: 300 SGMLNQDAEFKYKSCASI----GALYHGIWVHVY-IKKNQIS--------------IDNI 340
           SG     A  +  +  S+    G L     +H Y +K N +S              ++ I
Sbjct: 316 SG-----ARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEI 370

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           E A  LF E  EK++  W ++I+ Y   G  + AI LF EM+++   P+ VT   +LSAC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           +  G +  G  ++    R  + +  +     ++ +  + G + E+      M    +V+ 
Sbjct: 431 AQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT- 488

Query: 461 WSSLLRACRCH 471
           W++++     H
Sbjct: 489 WNTMISGYGLH 499


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/546 (34%), Positives = 292/546 (53%), Gaps = 58/546 (10%)

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
           N  ++++N MIS Y + G Y+E L ++ +M + G+  DE T  S+I A      L++GK 
Sbjct: 248 NMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQ 307

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +H ++       S    N LV +Y+KCGK  EA+ +  +  +   D+V W  L+SGYV S
Sbjct: 308 VHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEK--MPAKDLVSWNALLSGYVSS 364

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQ---------------------DAEFK--Y 311
               EA+ +F EM E+N++SW +MISG+                        D  F    
Sbjct: 365 GHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAI 424

Query: 312 KSCASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVY 356
           KSCA +GA  +G   H  + K    + +S  N           +E A  +F  +   +  
Sbjct: 425 KSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSV 484

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W ++IAA    GH  +A+D++ EM + G +PD++T + +L+ACSH GLVD+G  +    
Sbjct: 485 SWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSM 544

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
             VY I P   HY  ++DLL R+G   ++ + I S+P  P   IW +LL  CR H N++L
Sbjct: 545 ETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMEL 604

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
              A   L    P +DG ++LL+N++A  G+ ++++R+R  +RD G+KK++  S IE   
Sbjct: 605 GIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMET 664

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL----------------QHRE 579
            VH F   D  +P +E +Y+ L ++   +++ G + +TS                  H E
Sbjct: 665 QVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSE 724

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           ++AVAFGL+     TTIRI  NLR CGDCH+F +  S V  R+I++RD  RFH F+ G+C
Sbjct: 725 KIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGEC 784

Query: 640 SCRDYW 645
           SC ++W
Sbjct: 785 SCGNFW 790



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 116/522 (22%), Positives = 204/522 (39%), Gaps = 104/522 (19%)

Query: 26  PKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF 85
           P   + R  AN    +L + +  R  +S+     +H ++IT        I  ++ +    
Sbjct: 3   PNPDLVRAIANRYAANLRLCLPLRR-TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCK 61

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145
           + +L YA+Q+  +  EP+      I    +++GY                     G +  
Sbjct: 62  SSELNYARQLFDEISEPD-----KIARTTMVSGYCAS------------------GDITL 98

Query: 146 VCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
              +F+K P   RD + +N MI+ ++        + L  KM  EG  PD  T  S+++  
Sbjct: 99  ARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGL 158

Query: 204 TKLRDLE-MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK----IGEAQKLLGRYEIDE 258
             + D E      H    +S      S+ N LV +Y KC      +  A+K+    EI E
Sbjct: 159 ALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFD--EILE 216

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLN----QDA------ 307
            D   WTT+++GYVK+   D    L + M +   L+++  MISG +N    Q+A      
Sbjct: 217 KDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRR 276

Query: 308 ---------EFKY----KSCASIGALYHGIWVHVYIKKNQ-------------------- 334
                    EF Y    ++CA+ G L  G  VH Y+ + +                    
Sbjct: 277 MVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKF 336

Query: 335 -------------------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
                                    +S  +I  A  +F E+ EKN+  W  +I+  A  G
Sbjct: 337 DEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENG 396

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
             ++ + LF  M+  G +P    F   + +C+  G    G  + ++  ++      +   
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKI-GFDSSLSAG 455

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
             ++ +  + G +EE+     +MP    VS W++L+ A   H
Sbjct: 456 NALITMYAKCGVVEEARQVFRTMPCLDSVS-WNALIAALGQH 496



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++E  Q+F  +P  D +SWN +I+     G   E + +  +M  +G+ PD +T+++
Sbjct: 464 KCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLT 523

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           +++A +    ++ G+  +    E+  +I     +Y  L+D+  + GK  +A+ ++     
Sbjct: 524 VLTACSHAGLVDQGRK-YFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPF 582

Query: 257 DEVDVVLWTTLVSG 270
                 +W  L+SG
Sbjct: 583 KPT-AEIWEALLSG 595


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/521 (35%), Positives = 288/521 (55%), Gaps = 40/521 (7%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           WN +I+ YT     R  L + +++       D     S++ A  ++   ++GK +H F+ 
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 186

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW----TTLVSGYVKSNE 276
           +  +     + N L+ MY +C  +  A+ +  +  + E DVV W    T L+  Y K   
Sbjct: 187 KKGLDRDVFVGNALMLMYGECACVEYARLVFDK--MMERDVVSWIPTTTALLDMYAKCGH 244

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH--VYIKKNQ 334
              AR+LF+ + ++ ++SWT MI+G +  +   +  +   I      I+ +    + K +
Sbjct: 245 LGLARQLFNGLTQKTVVSWTAMIAGCIRSN-RLEEGTKLFIRMQEENIFPNEITMLNKER 303

Query: 335 ISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           + +D               +I  A  LF E   +++ +W ++I  +AM G+ ++A+D+F 
Sbjct: 304 VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA 363

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
           EME  G KP+ +TFI LL ACSH GLV EG     K    + + P+++HYGCMVDLLGRA
Sbjct: 364 EMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRA 423

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499
           G L+E+   I SMPI P+  +W +L+ ACR H+N +L E A   L E +P N G +VL++
Sbjct: 424 GLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMS 483

Query: 500 NIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN 559
           NIYA A R  D + +R  ++ +G+KK+ G+S+IE  G VH+F  GD  +P    I  ML 
Sbjct: 484 NIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLA 543

Query: 560 EIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLR 603
           E+   L + G                +ET+L  H E+LA+AFGLIST+  T IRIV NLR
Sbjct: 544 EMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLR 603

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           +C DCH+  K+ S++Y R I++RD  RFH F+ G CSC DY
Sbjct: 604 VCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 109/247 (44%), Gaps = 29/247 (11%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSI 110
           C+ ++    +   ++  +++     +T + +     G LG A+Q+     +  +  W ++
Sbjct: 207 CACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAM 266

Query: 111 I-----ENQLING------------YPQEVFAIYLYLVTRTVLLN--------KCGKLKE 145
           I      N+L  G            +P E+  +    V    +LN        KCG +  
Sbjct: 267 IAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINA 326

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
             +LF +  +RD+  WN +I+ +   G   E L + ++M  +GV P+++T + L+ A + 
Sbjct: 327 AGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 386

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
              +  GK L   +   T  +   + +Y  +VD+  + G + EA +++    I + + ++
Sbjct: 387 AGLVTEGKKLFEKMVH-TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPI-KPNTIV 444

Query: 264 WTTLVSG 270
           W  LV+ 
Sbjct: 445 WGALVAA 451


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/548 (33%), Positives = 305/548 (55%), Gaps = 50/548 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG--VSPDE 193
           + N C +  +  + FD++P+ + +    M S Y    +    L L  K+ A G   + DE
Sbjct: 134 MYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNNLVYPSLALFRKLIASGSATAVDE 193

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK--IGEAQKLL 251
              +   SA  ++ D  +  +LH  + ++ +     ++N ++D Y K G+  +G A+K+ 
Sbjct: 194 AAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKV- 252

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA---E 308
             ++  E DVV W ++++ Y ++    +A  L+ +M         L +SG +  +A    
Sbjct: 253 --FDTMEKDVVSWNSMIALYAQNGMSADALGLYRKM---------LNVSGSIKCNAVTLS 301

Query: 309 FKYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEK 353
               +CA  G +  G  +H           VY+  + + +      +E+A   F +I EK
Sbjct: 302 AILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEK 361

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           N+  W+++I  Y M GH Q+A+D+F EM  +G  P+ +TFI++L+ACSH GL+D+G  + 
Sbjct: 362 NILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWY 421

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           +   + + I+P ++HYGCMVDLLGRAG L+E+   I  M + PD +IW +LL ACR H+N
Sbjct: 422 NAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKN 481

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
           V+LAE + K L E D  N G +VLL+NIYA+AG   D+ R+R+ ++  G++K  GYS +E
Sbjct: 482 VELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVE 541

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-H 577
             G  H F  GD  +P  +EIY  L ++   +Q+ G                + ++L  H
Sbjct: 542 LKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIH 601

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            E+LA+AF L+++   + I ++ NLR+C DCH+ +K+ +++  REI++RD  RFH F+ G
Sbjct: 602 SEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDG 661

Query: 638 QCSCRDYW 645
            CSC DYW
Sbjct: 662 SCSCGDYW 669



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 91/165 (55%), Gaps = 9/165 (5%)

Query: 128 LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +Y+ T  V + +KCG+++   + F K+  ++++SW+ MI+ Y   G  +E L + ++M  
Sbjct: 332 VYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCR 391

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKI 244
            G +P+ +T +S+++A +    L+ G+  +  +++    I   + +Y  +VD+  + G +
Sbjct: 392 SGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKK-RFGIEPGVEHYGCMVDLLGRAGCL 450

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSG--YVKSNERDE--ARRLFD 285
            EA  L+   ++ + D  +W  L+S     K+ E  E  A+RLF+
Sbjct: 451 DEAYGLIKEMKV-KPDAAIWGALLSACRIHKNVELAEISAKRLFE 494


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/538 (34%), Positives = 294/538 (54%), Gaps = 41/538 (7%)

Query: 139  KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
            K G +++ C++F+   NRD+ISWN ++S +        GL + ++M AEG +P+  T +S
Sbjct: 478  KIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFIS 537

Query: 199  LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            ++ + + L D+++GK +H  + ++++  +  +   LVDMY K   + +A+ +  R  + +
Sbjct: 538  ILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR--LIK 595

Query: 259  VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             D+  WT +V+GY +  + ++A + F +M    +      ++  L+         C+ I 
Sbjct: 596  RDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLS--------GCSRIA 647

Query: 319  ALYHGIWVH-VYIKKNQ--------------ISIDNIELAYDLFSEISEKNVYLWTSVIA 363
             L  G  +H + IK  Q                   +E A  +F  +  ++   W ++I 
Sbjct: 648  TLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIIC 707

Query: 364  AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
             Y+  G   KA+  F  M + GT PD+VTFI +LSACSH GL++EG    +  S++Y I 
Sbjct: 708  GYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGIT 767

Query: 424  PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
            P ++HY CMVD+LGRAG   E  +FI  M +  +V IW ++L AC+ H N++  E A   
Sbjct: 768  PTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMK 827

Query: 484  LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
            L E +P  D  ++LL+N++A  G  DD++ +R  +   G+KK+ G S +E  G VH F S
Sbjct: 828  LFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLS 887

Query: 544  GDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGL 587
             D  +P   EI+L L ++   L   G                 QE    H ERLA+AF L
Sbjct: 888  HDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFAL 947

Query: 588  ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +STS + TIRI  NLRICGDCH FMK  S++ N+E+V+RD   FH F+ G CSC+++W
Sbjct: 948  LSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 174/372 (46%), Gaps = 27/372 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG   +  ++F ++ + DV+SW+ +I+C    G  RE   +  +M   GV P++ T
Sbjct: 374 MYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFT 433

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + SL+SA T L DL  G+++H  + +   +   ++ N LV MY K G + +  ++     
Sbjct: 434 LASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVF--EA 491

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
               D++ W  L+SG+  +   D   R+F++M+             +L        +SC+
Sbjct: 492 TTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISIL--------RSCS 543

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
           S+  +  G  VH  I KN +  ++               +E A  +F+ + +++++ WT 
Sbjct: 544 SLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTV 603

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++A YA  G  +KA+  F++M+  G KP++ T  + LS CS    +D G    S   +  
Sbjct: 604 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAG 663

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
                M     +VD+  + G +E+ A  +    +  D   W++++     H     A  A
Sbjct: 664 Q-SGDMFVASALVDMYAKCGCVED-AEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKA 721

Query: 481 FKHLTETDPLND 492
           F+ + +   + D
Sbjct: 722 FEAMLDEGTVPD 733



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 205/493 (41%), Gaps = 94/493 (19%)

Query: 87  GDLGYAQ----QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGK 142
           GDL   +    Q+I+ G  P+  +WNS     L+N Y                   KCG 
Sbjct: 142 GDLNEGKAIHGQVIKSGINPDSHLWNS-----LVNVYA------------------KCGS 178

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
               C++F ++P RDV+SW  +I+ + + G     + L  +M  EGV  +E T  + + A
Sbjct: 179 ANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKA 238

Query: 203 RTKLRDLEMGKNLH---LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            +   DLE GK +H   + + + +    GS    LVD+Y KCG++  A+++     + + 
Sbjct: 239 CSMCLDLEFGKQVHAEAIKVGDFSDLFVGSA---LVDLYAKCGEMVLAERVF--LCMPKQ 293

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           + V W  L++G+ +  + ++   LF  M    +      +S +L        K CA+ G 
Sbjct: 294 NAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVL--------KGCANSGN 345

Query: 320 LYHGIWVHVYIKKNQISIDNI------------ELAYD---LFSEISEKNVYLWTSVIAA 364
           L  G  VH    +    +D               LA D   +F  I + +V  W+++I  
Sbjct: 346 LRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITC 405

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDF- 412
               G +++A ++F  M  +G  P+Q T  +L+SA +           H  +   G+++ 
Sbjct: 406 LDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYD 465

Query: 413 --LSKKSRVYNIKPKMQHYGCMV-------DLLG-----RAGHLEESA-------NFITS 451
             +        +K      GC V       DL+         H  E+        N + +
Sbjct: 466 NTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLA 525

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDD 510
               P++  + S+LR+C    +V L +     + +     ND     L ++YAK   L+D
Sbjct: 526 EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLED 585

Query: 511 MSRI--RMKLRDM 521
              I  R+  RD+
Sbjct: 586 AETIFNRLIKRDL 598



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/426 (18%), Positives = 169/426 (39%), Gaps = 75/426 (17%)

Query: 49  RSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           R+C+S   ++E + IH  +I + +  D  +   +       G   YA ++  +  E ++ 
Sbjct: 136 RTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVV 195

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN--------------------------- 138
            W ++I   +  GY      ++  +    V  N                           
Sbjct: 196 SWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEA 255

Query: 139 --------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                               KCG++    ++F  +P ++ +SWN +++ +  MG   + L
Sbjct: 256 IKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVL 315

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
            L  +M    ++  + T+ +++       +L  G+ +H        ++   +   LVDMY
Sbjct: 316 NLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMY 375

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KCG  G+A K+  R  I++ DVV W+ +++   +  +  EA  +F  M    +I     
Sbjct: 376 SKCGLAGDALKVFVR--IEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFT 433

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELA 343
           ++ +++        +   +G LY+G  +H  + K     DN               ++  
Sbjct: 434 LASLVS--------AATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDG 485

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             +F   + +++  W ++++ +         + +F +M   G  P+  TFI++L +CS  
Sbjct: 486 CRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSL 545

Query: 404 GLVDEG 409
             VD G
Sbjct: 546 SDVDLG 551


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 213/676 (31%), Positives = 341/676 (50%), Gaps = 91/676 (13%)

Query: 22   LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERI----HSHLITTNLMRDPQIST 77
            LGL  KM+       VCP    + +V +SCSS     RI    H  ++   L  D  ++ 
Sbjct: 372  LGLFTKMQDQ----GVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNN 427

Query: 78   QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLL 137
             + ++ V     GYA+++     E +   WN ++ + L                      
Sbjct: 428  SILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYL---------------------- 465

Query: 138  NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
             + G +++   LF +LP +D  SWNTMI      G  R  L LL KM A G + +++T  
Sbjct: 466  -QIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFS 524

Query: 198  SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
              +   + L  L +GK +H  + +  +   G + N L+DMY KCG++ +A  +      +
Sbjct: 525  IALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQE 584

Query: 258  E-------------VDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMIS 300
                          V+ V W+++VSGYV++   ++A + F  M    VE +  + T ++S
Sbjct: 585  SSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVS 644

Query: 301  GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYD 345
                        +CAS G L  G  VH YI+K    +D               ++  A+ 
Sbjct: 645  ------------ACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWL 692

Query: 346  LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
            +F++  ++NV LWTS+I+  A+ G  ++A+ LF  M   G  P++V+F+ +L+ACSH GL
Sbjct: 693  IFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGL 752

Query: 406  VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++EG  +      VY I+P  +H+ CMVDL GRAG L E   FI +  I    S+W S L
Sbjct: 753  LEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFL 812

Query: 466  RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
             +CR H+N+++     K L E +P + G ++L ++I A   R ++ ++IR  ++  G+KK
Sbjct: 813  SSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKK 872

Query: 526  QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI-----------EMTLQQQGLQETS 574
                S I+    VH F  GD  +P   +IY  L+E+           ++T   Q +++  
Sbjct: 873  NPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQ 932

Query: 575  LQ-----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
             Q     H E+LA+A+G+IST+  T IR++ NLR+C DCH+F+K  S++  REI+IRD  
Sbjct: 933  RQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIH 992

Query: 630  RFHRFQGGQCSCRDYW 645
            RFH F+ G CSC DYW
Sbjct: 993  RFHHFKHGHCSCADYW 1008



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 198/447 (44%), Gaps = 71/447 (15%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K   L++  ++F+++P  DV SW  +IS +  +G+  + LGL +KM  +GV P++ T
Sbjct: 330 LYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFT 389

Query: 196 M-VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           + + L S  + + D  +GK +H ++  + + +   L N ++D Y KC   G A+KL G  
Sbjct: 390 LSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGL- 448

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA-----EF 309
            + E D V W  ++S Y++  +  ++  LF ++  ++  SW  MI G++         E 
Sbjct: 449 -MAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALEL 507

Query: 310 KYKSCA------------------SIGALYHGIWVHVYIKKNQISIDN------------ 339
            YK  A                  S+  L  G  +H  + K  +  D             
Sbjct: 508 LYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCK 567

Query: 340 ---IELAYDLFSEISEKNVYL---------------WTSVIAAYAMAGHAQKAIDLFLEM 381
              +E A  +F  + +++  +               W+S+++ Y   G  + A+  F  M
Sbjct: 568 CGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFM 627

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH------YGCMVDL 435
             +  + D+ T  +++SAC+  G+++ G        +V+    K+ H         ++D+
Sbjct: 628 ICSQVEVDKFTLTSVVSACASAGVLELG-------RQVHGYIQKIGHGLDVFLGSSIIDM 680

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK-HLTETDPLNDGA 494
             + G L + A  I +     +V +W+S++  C  H   + A   F+  + E    N+ +
Sbjct: 681 YVKCGSLND-AWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVS 739

Query: 495 HVLLANIYAKAGRLDDMSRIRMKLRDM 521
            V +    + AG L++  +    +R++
Sbjct: 740 FVGVLTACSHAGLLEEGCKYFRLMREV 766



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 39/154 (25%)

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA--------------- 307
           L++ Y KS   ++A ++F+E+ + ++ SWT++ISG     L+ D                
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 308 ----EFKYKSCAS-IGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLF 347
                   KSC+S +     G  +H +I +N + +D +                 A  LF
Sbjct: 387 QFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLF 446

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
             ++EK+   W  ++++Y   G  QK++DLF ++
Sbjct: 447 GLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQL 480


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/535 (34%), Positives = 284/535 (53%), Gaps = 35/535 (6%)

Query: 139  KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
            K GKL    ++F +L  +DV+SW  MI+ Y     + E L L  +M  +G+  D +   S
Sbjct: 520  KLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFAS 579

Query: 199  LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
             ISA   ++ L  G+ +H     S      S+ N LV +Y +CGK+ +A     +  I  
Sbjct: 580  AISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDK--IFS 637

Query: 259  VDVVLWTTLVSGYVKSNERDEARRLFDEMVE--RNLISWTL----------MISGMLNQD 306
             D + W +L+SG+ +S   +EA  LF +M +  + + S+T               +  Q 
Sbjct: 638  KDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQI 697

Query: 307  AEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                 K+          + + +Y K       NI+ A   F E+ EKN   W +++  Y+
Sbjct: 698  HAMIIKTGHDSETEVSNVLITLYAK-----CGNIDDAERQFFEMPEKNEISWNAMLTGYS 752

Query: 367  MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
              GH  KA+ LF +M++ G  P+ VTF+ +LSACSH GLVDEG  +      V+ + PK 
Sbjct: 753  QHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKP 812

Query: 427  QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
            +HY C+VDLLGR+G L  +  F+  MPI PD  +  +LL AC  H+N+ + E A  HL E
Sbjct: 813  EHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLE 872

Query: 487  TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
             +P +   +VLL+N+YA  G+     R R  ++D G+KK+ G S IE    VH F +GD 
Sbjct: 873  LEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQ 932

Query: 547  FNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLIST 590
             +P+ ++IY  L ++     + G                   T + H E+LA+AFGL+S 
Sbjct: 933  KHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSL 992

Query: 591  SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S  T I +  NLR+CGDCH+++K  S++ +R IV+RD+ RFH F+GG CSC+DYW
Sbjct: 993  SSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 173/373 (46%), Gaps = 55/373 (14%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  +K   + F      +V+ WN M+  Y  +    E   + ++M  EG+ P++ T  S
Sbjct: 419 KCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPS 478

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++   + LR +++G+ +H  + ++  + +  + + L+DMY K GK+  A K+  R  + E
Sbjct: 479 ILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRR--LKE 536

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            DVV WT +++GY +  +  EA  LF EM ++ + S  +  +  ++        +CA I 
Sbjct: 537 KDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAIS--------ACAGIQ 588

Query: 319 ALYHGIWVH----VYIKKNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIA 363
           AL  G  +H    V    + +S+ N           +  AY  F +I  K+   W S+I+
Sbjct: 589 ALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLIS 648

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTF-----------IALLSACSHGGLVDEGYDF 412
            +A +GH ++A+ LF +M + G + +  TF              L    H  ++  G+D 
Sbjct: 649 GFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHD- 707

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
              ++ V N+         ++ L  + G+++++      MP   ++S W+++L     H 
Sbjct: 708 --SETEVSNV---------LITLYAKCGNIDDAERQFFEMPEKNEIS-WNAMLTGYSQHG 755

Query: 473 NVKLAEHAFKHLT 485
                 H FK L+
Sbjct: 756 ------HGFKALS 762



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 165/365 (45%), Gaps = 31/365 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G L    ++FD L  RD +SW  M+S  +  G   E + L  +M   GV P      S
Sbjct: 217 KNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSS 276

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA TK+   ++G+ LH  + +    +   + N LV +Y + G    A+++     + +
Sbjct: 277 VLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFN--AMLQ 334

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D V + +L+SG  +    D+A  LF +M    L    + ++ +L+        +C+S+G
Sbjct: 335 RDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLS--------ACSSVG 386

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           AL  G   H Y  K  +S D               +I+ A++ F     +NV LW  ++ 
Sbjct: 387 ALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLV 446

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           AY +  +  ++  +F +M+  G +P+Q T+ ++L  CS    VD G       ++V    
Sbjct: 447 AYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQI---HTQVLKTG 503

Query: 424 PKMQHY--GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            +   Y    ++D+  + G L+ +      +    DV  W++++     H+    A + F
Sbjct: 504 FQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEKFAEALNLF 562

Query: 482 KHLTE 486
           K + +
Sbjct: 563 KEMQD 567



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 173/365 (47%), Gaps = 36/365 (9%)

Query: 121 QEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
           ++ F++  Y+    V L ++ G      Q+F+ +  RD +S+N++IS  +  G   + L 
Sbjct: 299 KQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALE 358

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  KM  + + PD VT+ SL+SA + +  L +GK  H +  ++ M     L   L+D+Y 
Sbjct: 359 LFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYV 418

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISW 295
           KC  I  A +     E +  +VVLW  ++  Y   +  +E+ ++F +M    +E N  ++
Sbjct: 419 KCSDIKTAHEFFLSTETE--NVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTY 476

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK---------NQISID------NI 340
             ++            ++C+S+ A+  G  +H  + K         + + ID       +
Sbjct: 477 PSIL------------RTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKL 524

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           + A  +F  + EK+V  WT++IA YA      +A++LF EM++ G   D + F + +SAC
Sbjct: 525 DHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISAC 584

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           +    +++G   +  ++ V      +     +V L  R G + + A F        D   
Sbjct: 585 AGIQALNQGQQ-IHAQACVSGYSDDLSVGNALVSLYARCGKVRD-AYFAFDKIFSKDNIS 642

Query: 461 WSSLL 465
           W+SL+
Sbjct: 643 WNSLI 647



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 181/439 (41%), Gaps = 78/439 (17%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     +FD++P R +  WN ++  + +  M    LGL  +M  E V PDE T   ++
Sbjct: 117 GDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVL 176

Query: 201 SA------------RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
                         +   R +  G    LF           + N L+D+YFK G +  A+
Sbjct: 177 RGCGGGDVPFHCVEKIHARTITHGYENSLF-----------VCNPLIDLYFKNGFLNSAK 225

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ--D 306
           K+     + + D V W  ++SG  +S   +EA  LF +M    +     + S +L+    
Sbjct: 226 KVFDG--LQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTK 283

Query: 307 AEFKYKSCASIGALY--HGIWVHVYIKKNQIS----IDNIELAYDLFSEISEKNVYLWTS 360
            EF YK    +  L    G  +  Y+    ++    + N   A  +F+ + +++   + S
Sbjct: 284 VEF-YKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNS 342

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+  +  G++ KA++LF +M     KPD VT  +LLSACS  G +  G  F S     Y
Sbjct: 343 LISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHS-----Y 397

Query: 421 NIKPKMQH----YGCMVDL-------------------------------LGRAGHLEES 445
            IK  M       G ++DL                                G   +L ES
Sbjct: 398 AIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNES 457

Query: 446 ANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANI 501
               T M    I P+   + S+LR C   + V L E     + +T    N     +L ++
Sbjct: 458 FKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDM 517

Query: 502 YAKAGRLDDMSRIRMKLRD 520
           YAK G+LD   +I  +L++
Sbjct: 518 YAKLGKLDHALKIFRRLKE 536



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 34/179 (18%)

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           I+  +++ A  +F E+  + +  W  V+  +     A + + LF  M +   KPD+ T+ 
Sbjct: 114 IAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYA 173

Query: 395 ALLSACS------------HGGLVDEGYD-----------------FLSKKSRVYNIKPK 425
            +L  C             H   +  GY+                 FL+   +V++   K
Sbjct: 174 GVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQK 233

Query: 426 MQ--HYGCMVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEH 479
                +  M+  L ++G  EE+      M    + P   I+SS+L AC   +  K+ E 
Sbjct: 234 RDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQ 292


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 198/528 (37%), Positives = 283/528 (53%), Gaps = 71/528 (13%)

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH----LFLEESTMKISGSLLNYLVDMY 238
           +M    VSPD  T   L+ +      L +G+  H    LF  +    +  SLLN    MY
Sbjct: 52  RMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLN----MY 107

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
             CG +  AQ++    +    D+  W ++V+ Y K+   D+AR+LFDEM ERN+ISW+ +
Sbjct: 108 SSCGDLRSAQRVFD--DSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCL 165

Query: 299 ISGMLN------------------------QDAEFKYKS----CASIGALYHGIWVHVYI 330
           I+G +                         +  EF   +    C  +GAL  G WVH YI
Sbjct: 166 INGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYI 225

Query: 331 KKNQISID---------------NIELAYDLFSEI-SEKNVYLWTSVIAAYAMAGHAQKA 374
            K  + ID               ++E A  +F+ + S+K+V  ++++I   AM G   + 
Sbjct: 226 DKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDEC 285

Query: 375 IDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
             LF EM  +    P+ VTF+ +L AC H GL++EG  +       + I P +QHYGCMV
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DL GR+G ++E+ +FI SMP+ PDV IW SLL   R   ++K  E A K L E DP+N G
Sbjct: 346 DLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSG 405

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
           A+VLL+N+YAK GR  ++  IR ++   G+ K  G S +E  G VH+F  GD     SE 
Sbjct: 406 AYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESER 465

Query: 554 IYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIR 597
           IY ML+EI   L++ G                +E +L  H E+LA+AF L+ T   T +R
Sbjct: 466 IYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVR 525

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I+ NLRICGDCH  MK+ S++++REIV+RD  RFH F+ G CSCRD+W
Sbjct: 526 IIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 149/331 (45%), Gaps = 47/331 (14%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           +R H+ ++   L +DP + T +       GDL  AQ++       ++  WNS++     N
Sbjct: 82  QRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVV-----N 136

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
            Y                   K G + +  +LFD++P R+VISW+ +I+ Y   G Y+E 
Sbjct: 137 AYA------------------KAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEA 178

Query: 178 LGL-----LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
           L L     L K     V P+E TM +++SA  +L  LE GK +H ++++  ++I   L  
Sbjct: 179 LDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGT 238

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----- 287
            L+DMY KCG +  A+++       + DV  ++ ++         DE  +LF EM     
Sbjct: 239 ALIDMYAKCGSLERAKRVFNALG-SKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDN 297

Query: 288 VERNLISWTLMIS-----GMLNQDAEFKYKSCASIGAL----YHGIWVHVYIKKNQISID 338
           +  N +++  ++      G++N+   +        G      ++G  V +Y +   I   
Sbjct: 298 INPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIK-- 355

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
             E    + S   E +V +W S+++   M G
Sbjct: 356 --EAESFIASMPMEPDVLIWGSLLSGSRMLG 384


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 200/624 (32%), Positives = 325/624 (52%), Gaps = 72/624 (11%)

Query: 84  VFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY-----LYLVTRTVLLN 138
           V +G +  A+ +  +        WN ++   + +G  +E   ++       L++   L+ 
Sbjct: 137 VRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMG 196

Query: 139 ---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
              K   L +  QLFD++P RD+ISWNTMIS Y   G     L    ++  E    D  T
Sbjct: 197 GYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDG----DLSQARRLFEESPVRDVFT 252

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             +++ A  +   L+  + +    +E   K   S  N ++  Y +  ++   ++L    E
Sbjct: 253 WTAMVYAYVQDGMLDEARRV---FDEMPQKREMSY-NVMIAGYAQYKRMDMGRELF--EE 306

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM------------- 302
           +   ++  W  ++SGY ++ +  +AR LFD M +R+ +SW  +I+G              
Sbjct: 307 MPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNML 366

Query: 303 --LNQDAEFKYKS--------CASIGALYHGIWVHVYIKKNQIS----IDN--------- 339
             + +D E   +S        CA I AL  G  VH  + +        + N         
Sbjct: 367 VEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKC 426

Query: 340 --IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             I+ AYD+F  +  K++  W +++A YA  G  ++A+ +F  M   G KPD++T + +L
Sbjct: 427 GCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVL 486

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           SACSH GL D G ++    ++ Y I P  +HY CM+DLLGRAG LEE+ N I +MP  PD
Sbjct: 487 SACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPD 546

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
            + W +LL A R H N++L E A + + + +P N G +VLL+N+YA +GR  D+S++R+K
Sbjct: 547 AATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLK 606

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL- 575
           +R +G++K  GYS +E    +H FT GD F+P    IY  L E+++ ++ +G +  T L 
Sbjct: 607 MRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLV 666

Query: 576 --------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                          H E+LAVAFG+++      IR++ NLR+C DCH+ +K  S++  R
Sbjct: 667 LHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGR 726

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
            I++RD+ R+H F  G CSCRDYW
Sbjct: 727 LIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 145/316 (45%), Gaps = 61/316 (19%)

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
           +L++   LFD +P +DV+SWN M+S Y   G   E   +  +M  +    + ++   L++
Sbjct: 110 RLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLA 165

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
           A  +   LE  +   LF  +S  ++     N L+  Y K   +G+A++L    +I   D+
Sbjct: 166 AYVRSGRLEEARR--LFESKSDWELISC--NCLMGGYVKRNMLGDARQLFD--QIPVRDL 219

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-----SGMLN----------QD 306
           + W T++SGY +  +  +ARRLF+E   R++ +WT M+      GML+          Q 
Sbjct: 220 ISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQK 279

Query: 307 AEFKYKSCASIGALYH-----------------GIW---VHVYIKKNQISIDNIELAYDL 346
            E  Y    +  A Y                  G W   +  Y +   ++      A +L
Sbjct: 280 REMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLA-----QARNL 334

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS----- 401
           F  + +++   W ++IA YA  G  ++A+++ +EM+  G   ++ TF   LSAC+     
Sbjct: 335 FDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAAL 394

Query: 402 ------HGGLVDEGYD 411
                 HG +V  GY+
Sbjct: 395 ELGKQVHGQVVRTGYE 410



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 64/352 (18%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD +P R+ +S+N MIS Y     +     L  KM  + +    + +      R +LRD
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNR-RLRD 113

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
             M                      L D                   + E DVV W  ++
Sbjct: 114 ARM----------------------LFD------------------SMPEKDVVSWNAML 133

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKSCASIGALYHGI 324
           SGYV+S   DEAR +FD M  +N ISW  +++  +     ++A   ++S +    +    
Sbjct: 134 SGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNC 193

Query: 325 WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
            +  Y+K+N +       A  LF +I  +++  W ++I+ YA  G   +A  LF   EE+
Sbjct: 194 LMGGYVKRNMLGD-----ARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF---EES 245

Query: 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH--YGCMVDLLGRAGHL 442
             + D  T+ A++ A    G++DE         RV++  P+ +   Y  M+    +   +
Sbjct: 246 PVR-DVFTWTAMVYAYVQDGMLDEA-------RRVFDEMPQKREMSYNVMIAGYAQYKRM 297

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
           +        MP  P++  W+ ++     + ++  A + F  + + D ++  A
Sbjct: 298 DMGRELFEEMPF-PNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAA 348



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 117/276 (42%), Gaps = 52/276 (18%)

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
           V +  ++SGY+++ +   AR LFD+M  ++L SW LM++G                    
Sbjct: 65  VSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTG-------------------- 104

Query: 322 HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
                  Y +  ++    +     LF  + EK+V  W ++++ Y  +GH  +A D+F  M
Sbjct: 105 -------YARNRRLRDARM-----LFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM 152

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
                  + +++  LL+A    G ++E       KS    I        C++    +   
Sbjct: 153 PHK----NSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCN-----CLMGGYVKRNM 203

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           L ++      +P+  D+  W++++       ++  A   F    E  P+ D      A +
Sbjct: 204 LGDARQLFDQIPV-RDLISWNTMISGYAQDGDLSQARRLF----EESPVRD-VFTWTAMV 257

Query: 502 YA--KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           YA  + G LD+  R+     +M  K+++ Y+++  G
Sbjct: 258 YAYVQDGMLDEARRV---FDEMPQKREMSYNVMIAG 290


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 301/545 (55%), Gaps = 49/545 (8%)

Query: 135 VLLNKCGKLKEVCQLFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           V L+KC ++ +   LF  +   ++V+SW  MIS     G   + + L S+M  EGV P+ 
Sbjct: 338 VALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNH 397

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T  ++++    +   EM    H  + ++  + S S+   L+D Y K G   +A K+   
Sbjct: 398 FTYSAILTVHYPVFVSEM----HAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKV--- 450

Query: 254 YEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
           +EI E  D++ W+ +++GY ++ E +EA +LF ++++  +       S ++N        
Sbjct: 451 FEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVIN-------- 502

Query: 313 SCAS-IGALYHGIWVHVYIKK----NQISID-----------NIELAYDLFSEISEKNVY 356
           +CAS   A   G   H Y  K    N + +            NI+ A+++F    E+++ 
Sbjct: 503 ACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLV 562

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W S+I+ Y+  G A+KA+++F EM++     D VTFI +++AC+H GLV++G  + +  
Sbjct: 563 SWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSM 622

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
              ++I P M+HY CM+DL  RAG LE++   I  MP PP  ++W +LL A R H+NV+L
Sbjct: 623 INDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVEL 682

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
            E A + L    P +  A+VLL+N+YA AG   + + +R  +    +KK+ GYS IE   
Sbjct: 683 GELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKN 742

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ---------------ETSL-QHRER 580
             + F +GD+ +P S +IY  L+E+ + L+  G Q               ET L  H ER
Sbjct: 743 KTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSER 802

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFGLI+T  +  I+IV NLR+CGDCH+F K+ S V  R IV+RD+ RFH F+ G CS
Sbjct: 803 LAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCS 862

Query: 641 CRDYW 645
           C DYW
Sbjct: 863 CGDYW 867



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 195/433 (45%), Gaps = 60/433 (13%)

Query: 77  TQVFEFLVFTGDLGYAQQI----IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVT 132
           + V   LV  G +G   Q+    ++ G E  I ++NS+I                     
Sbjct: 198 STVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLIS-------------------- 237

Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
              L ++ G L++   +FDK+  RD ++WN+MI+ Y   G   E   + +KM   GV P 
Sbjct: 238 ---LYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPT 294

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
            +T  S+I +   LR+L + K +     +S       ++  L+    KC ++ +A  L  
Sbjct: 295 HMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFS 354

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL------------ISWTLMIS 300
             E +  +VV WT ++SG +++   D+A  LF +M    +            + + + +S
Sbjct: 355 LME-EGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVS 413

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTS 360
            M  +  +  Y+  +S+G       +  Y+K     + N   A  +F  I  K++  W++
Sbjct: 414 EMHAEVIKTNYERSSSVGTAL----LDAYVK-----LGNTIDAVKVFEIIEAKDLMAWSA 464

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC-SHGGLVDEGYDFLSKKSRV 419
           ++A YA  G  ++A  LF ++ + G KP++ TF ++++AC S     ++G  F       
Sbjct: 465 MLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF-----HA 519

Query: 420 YNIKPKMQHYGC----MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
           Y IK ++ +  C    +V +  + G++ +SA+ +       D+  W+S++     H   K
Sbjct: 520 YAIKMRLNNALCVSSALVTMYAKRGNI-DSAHEVFKRQKERDLVSWNSMISGYSQHGQAK 578

Query: 476 LAEHAFKHLTETD 488
            A   F  + + +
Sbjct: 579 KALEVFDEMQKRN 591



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 184/423 (43%), Gaps = 59/423 (13%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD++  R+V+SW ++++ Y+  G+Y     L  +M  EGV P+  T+ ++I+A     
Sbjct: 149 RVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEG 208

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            + +G  +H  + +   + +  + N L+ +Y + G + +A+ +  + EI   D V W ++
Sbjct: 209 VVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR--DWVTWNSM 266

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++GYV++ +  E   +F++M    +    +  + ++        KSCAS+  L     + 
Sbjct: 267 IAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVI--------KSCASLRELALVKLMQ 318

Query: 328 VYIKKNQISIDNIEL---------------AYDLFSEISE-KNVYLWTSVIAAYAMAGHA 371
               K+  + D I +               A  LFS + E KNV  WT++I+     G  
Sbjct: 319 CKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGN 378

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLS-------ACSHGGLVDEGYDFLSK--------- 415
            +A++LF +M   G KP+  T+ A+L+       +  H  ++   Y+  S          
Sbjct: 379 DQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAY 438

Query: 416 --------KSRVYNI--KPKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPDVSIWS 462
                     +V+ I     +  +  M+    + G  EE+A     +    I P+   +S
Sbjct: 439 VKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFS 498

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV--LLANIYAKAGRLDDMSRI--RMKL 518
           S++ AC            F        LN+   V   L  +YAK G +D    +  R K 
Sbjct: 499 SVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKE 558

Query: 519 RDM 521
           RD+
Sbjct: 559 RDL 561



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 135/319 (42%), Gaps = 79/319 (24%)

Query: 124 FAIYLYLVTRTVLLNKCGKLKEVCQ-LFDKLPNRDVI--SWNTMISCYTSMGMYREGLGL 180
           ++I L  ++ TVL      +  +   LFDK+P+R       N ++  Y+     +E L L
Sbjct: 26  YSISLKFISNTVLC-----VPHIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNL 80

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
              +    + PDE T+  + +      D ++G+ +H                       +
Sbjct: 81  FVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHC----------------------Q 118

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           C K G          +D V V   T+LV  Y+K+   ++ RR+FDEM ERN++SWT +++
Sbjct: 119 CVKFGL---------VDHVSV--GTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLA 167

Query: 301 GM-----------LNQDAEF------KYKSCASIGALYH------GIWVHVYIKKN---- 333
           G            L    ++      +Y     I AL +      G+ VH  + K+    
Sbjct: 168 GYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEE 227

Query: 334 QISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
            I + N           +  A D+F ++  ++   W S+IA Y   G   +  ++F +M+
Sbjct: 228 AIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQ 287

Query: 383 ETGTKPDQVTFIALLSACS 401
             G KP  +TF +++ +C+
Sbjct: 288 LAGVKPTHMTFASVIKSCA 306


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 197/658 (29%), Positives = 326/658 (49%), Gaps = 85/658 (12%)

Query: 42  LDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           + ++ +  +C+S+      + IHS+ I      D  +   + +     G +  A  +   
Sbjct: 260 ISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNV 319

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR-- 156
            +  ++  WN+     ++ GY Q                   GK     +LF  +     
Sbjct: 320 MEFKDVVSWNA-----MVTGYTQS------------------GKFGAAFELFKNMRKENI 356

Query: 157 --DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
             DVI+W+ +I+ Y   G  +E L    +M   G  P+ VT++SL+SA   L  L  G  
Sbjct: 357 PLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGME 416

Query: 215 LHLF-LEESTMKISGS-----------LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
            H + L++  + +              + N L+DMY KC     A+ +       E +VV
Sbjct: 417 THAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVV 476

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVER--NLISWTLMISGMLNQDAEFKYKSCASIGAL 320
            WT ++ GY +  + ++A +LF EM+ +   +      IS +L         +CA + +L
Sbjct: 477 TWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCIL--------MACAHLSSL 528

Query: 321 YHGIWVHVYIKKNQ-----------ISID------NIELAYDLFSEISEKNVYLWTSVIA 363
             G  +H Y+ ++              ID      +++ A ++F  + ++N   WTS+++
Sbjct: 529 RMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMS 588

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y M G  ++A+D+F +M++ G  PD ++F+ LL ACSH G+VD+G D+       Y + 
Sbjct: 589 GYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVI 648

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
              QHY C++DLL R+G L+++   I  MP+ P  +IW +LL ACR H NV+LAE+A   
Sbjct: 649 ASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNK 708

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L      NDG++ L++NIYA A R  D++RIR  ++  G+KK+ G S ++       F  
Sbjct: 709 LVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFV 768

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGL 587
           GD  +P S EIY +L  +   ++  G + ET+                +H E+LA+A+GL
Sbjct: 769 GDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGL 828

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++TS    IRI  NLR+CGDCHS     S++ + EI++RD+ RFH F+ G CSC  YW
Sbjct: 829 LTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 192/444 (43%), Gaps = 75/444 (16%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR---DVISWNTMISCYTSMGM 173
           NG+   VF     +     + ++ G L++   +FD++  +   DVISWN++++ +     
Sbjct: 178 NGFESNVFVCNALVA----MYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233

Query: 174 YREGLGLLSKMG------AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
            R  L L S+M       A     D +++V+++ A   L+ L   K +H +   +     
Sbjct: 234 PRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFAD 293

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             + N L+D Y KCG + +A  +    E    DVV W  +V+GY +S +   A  LF  M
Sbjct: 294 AFVCNALIDTYAKCGSMKDAVNVFNVMEFK--DVVSWNAMVTGYTQSGKFGAAFELFKNM 351

Query: 288 VERNL----ISWTLMISGM----LNQDAEFKYK-------------------SCASIGAL 320
            + N+    I+W+ +I+G       Q+A   ++                   +CAS+GAL
Sbjct: 352 RKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGAL 411

Query: 321 YHGIWVHVY-IKKNQISID--------------------------NIELAYDLFSEIS-- 351
             G+  H Y +KK  +S+D                          + + A  +F+ I   
Sbjct: 412 SQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRR 471

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSACSHGGLVDEG 409
           E+NV  WT +I  YA  G +  A+ LF EM  +     P+  T   +L AC+H   +  G
Sbjct: 472 ERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMG 531

Query: 410 YDFLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
               +  +R +  +  +     C++D+  + G ++ + N   SMP   +VS W+S++   
Sbjct: 532 KQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGY 590

Query: 469 RCHQNVKLAEHAFKHLTETDPLND 492
             H   K A   F  + +   + D
Sbjct: 591 GMHGRGKEALDIFDKMQKAGFVPD 614



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 135/328 (41%), Gaps = 67/328 (20%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG   +   + +++     + WN ++  +   G     +G+  +M   G  PD  T+   
Sbjct: 96  CGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYA 155

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL---LGRYEI 256
           + A  +L     G   H  +  +  + +  + N LV MY + G + +A  +   + R  I
Sbjct: 156 LKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGI 215

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF-----KY 311
           D  DV+ W ++V+ +VK +    A  LF EM        T++     N+ ++        
Sbjct: 216 D--DVISWNSIVAAHVKGSNPRTALDLFSEMT-------TIVHEKATNERSDIISIVNIL 266

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID--------------------------------- 338
            +CAS+ AL     +H Y  +N    D                                 
Sbjct: 267 PACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVV 326

Query: 339 -------------NIELAYDLFSEISEKNVYL----WTSVIAAYAMAGHAQKAIDLFLEM 381
                            A++LF  + ++N+ L    W++VIA YA  G+ Q+A+D F +M
Sbjct: 327 SWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM 386

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEG 409
              G++P+ VT I+LLSAC+  G + +G
Sbjct: 387 ILYGSEPNSVTIISLLSACASLGALSQG 414


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 204/595 (34%), Positives = 329/595 (55%), Gaps = 55/595 (9%)

Query: 84  VFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN---KC 140
           VF   + Y++ I        ++    + E+    GY  ++F +         LLN   K 
Sbjct: 51  VFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVV-------NTLLNMYVKF 103

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
             L+E   LFD++P R+V+SW TMIS Y++  +  + L  L  M  EGV P+  T  S++
Sbjct: 104 NLLEEAEDLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVL 162

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY-EIDEV 259
            A   L +L   + LH  + ++ ++    + + L+D+Y K   +  A   LG + E+   
Sbjct: 163 RACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNA---LGVFDEMPTR 216

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           D+V+W +++ G+ ++++ +EA  LF  M     ++    ++ +L        ++C  +  
Sbjct: 217 DLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVL--------RACTGLAL 268

Query: 320 LYHGIWVHVYIKK-------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
           L  G  VHV++ K       N   ID      ++E A   FS + EK+V  W++++A  A
Sbjct: 269 LELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLA 328

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G++++A++LF  M+E+G++P+ +T + +L ACSH GLV++G+ +     +++ + P  
Sbjct: 329 QNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGR 388

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HYGC++DLLGRAG L+E+   I  M   PD   W +LL ACR H+NV LA +A K + E
Sbjct: 389 EHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIE 448

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            +P + G ++LL+NIYA   R +D++ +R  + + G++K  G S IE    +H F  GD 
Sbjct: 449 LEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDT 508

Query: 547 FNPHSEEIYLMLNEI-------------EMTLQQ-QGLQ-ETSLQ-HRERLAVAFGLIST 590
            +P  EEI   LN++                LQ  +G Q E SL+ H E+LA+ FGL++ 
Sbjct: 509 SHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNL 568

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S + T+RI  NLRICGDCH F KV S++ +R IVIRD  R+H FQ G CSC DYW
Sbjct: 569 SREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 110/274 (40%), Gaps = 55/274 (20%)

Query: 47  VERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
           V R+C  +    ++H  +I T L  D  + + + +      DL  A  +  +    ++ +
Sbjct: 161 VLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVV 220

Query: 107 WNSII--------ENQLINGYPQEVFAIYLY----------------------------- 129
           WNSII         N+ +N + +   A +L                              
Sbjct: 221 WNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVL 280

Query: 130 -----LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                L+    L++   KCG L++    F ++  +DVISW+TM++     G  R+ L L 
Sbjct: 281 KFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELF 340

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG-----SLLNYLVD 236
             M   G  P+ +T++ ++ A +    +E G     +   S  K+ G          L+D
Sbjct: 341 ESMKESGSRPNYITVLGVLFACSHAGLVEKG----WYYFRSMKKLFGVDPGREHYGCLID 396

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +  + G++ EA KL+   E  E D V W TL+  
Sbjct: 397 LLGRAGRLDEAVKLIHEMEC-EPDSVTWRTLLGA 429


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 188/539 (34%), Positives = 290/539 (53%), Gaps = 29/539 (5%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
           T LL+   KC +L   C++F  +P R+ ++W+ +I  +       E   L   M  EG+ 
Sbjct: 244 TALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLC 303

Query: 191 PDEVTMV-SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
               T V S +     L DL MG  LH  + +S +    +  N L+ MY K G I EA  
Sbjct: 304 FLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATM 363

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL---ISWTLMISGMLNQD 306
                EI   D + +  L+SG V++ + +EA  +F +M   N+   I+  + +    +  
Sbjct: 364 FFD--EIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHL 421

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVI 362
           A  ++  C+    +  G+ +   I  + I +      I+L+  +F ++  ++V  W ++I
Sbjct: 422 AALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMI 481

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           A Y + G  ++A  LFL M+  G  PD VTFI L++ACSH GLV EG  +    +  Y I
Sbjct: 482 AGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGI 541

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
            P+M+HY CMVDLL R G L+E+  FI SMP+  DV +W +LL ACR H+N+ L +   +
Sbjct: 542 LPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSR 601

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            + +  P   G  VLL+NI++ AGR D+ + +R+  +  G KK  GYS IE  G +H F 
Sbjct: 602 IIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFV 661

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQHRERLAVAFG 586
            GD  +P S +IY  L+ I + +++ G Q  +                L H E+LA+AFG
Sbjct: 662 GGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFG 721

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++S +E  TI +  NLR+CGDCH+ +K  + V NR I++RD  RFH F+ GQCSC ++W
Sbjct: 722 VLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 169/369 (45%), Gaps = 43/369 (11%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG-LLSKMG 185
           L   T L++   +C +      +F K+P RDV++WN M++ Y + GMY   +  LL    
Sbjct: 135 LFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQD 194

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF-----LEESTMKISGSLLNYLVDMYFK 240
             G+ P+  T+VSL+    +   L  G ++H +     LE++  ++   +   L+DMY K
Sbjct: 195 HGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQV--LIGTALLDMYAK 252

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL--ISWTLM 298
           C ++  A ++   + +   + V W+ L+ G+V  +   EA  LF +M+   L  +S T +
Sbjct: 253 CKQLVYACRVF--HGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSV 310

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELA 343
            S +         + CAS+  L+ G  +H  I K+ I  D                I  A
Sbjct: 311 ASAL---------RVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEA 361

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
              F EI+ K+   + ++++     G A++A  +F +M+    +PD  T ++L+ ACSH 
Sbjct: 362 TMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHL 421

Query: 404 GLVDEGYDFLSKKSRVY-NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
             +  G    S  S +   +  +      ++D+  + G ++ S      MP   DV  W+
Sbjct: 422 AALQHGK--CSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMP-ARDVVSWN 478

Query: 463 SLLRACRCH 471
           +++     H
Sbjct: 479 TMIAGYGIH 487



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 149/361 (41%), Gaps = 35/361 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L    Q+FD++P  D  ++N +I  Y+ +G +   + L   M    V+P++ T   ++
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A + L DL  G+ +H     + +     +   L+D+Y +C + G A+ +  +  +   D
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR--D 165

Query: 261 VVLWTTLVSGYVKSNERDEA-RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           VV W  +++GY        A   L D      L      +  +L   A+         GA
Sbjct: 166 VVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQH--------GA 217

Query: 320 LYHGIWVHVYI-------KKNQISIDNIEL-----------AYDLFSEISEKNVYLWTSV 361
           L+ G  +H Y         + Q+ I    L           A  +F  +  +N   W+++
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA-LLSACSHGGLVDEGYDFLSKKSRVY 420
           I  + +     +A +LF +M   G      T +A  L  C+    +  G    +  ++  
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAK-S 336

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I   +     ++ +  +AG + E+  F   + +   +S + +LL  C   QN K AE A
Sbjct: 337 GIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCV--QNGK-AEEA 392

Query: 481 F 481
           F
Sbjct: 393 F 393



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 7/156 (4%)

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
           +  IS   + LA  +F  I   +   + ++I AY+  G    AIDL+  M      P++ 
Sbjct: 42  EQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKY 101

Query: 392 TFIALLSACSHGGLVD-EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           TF  +L ACS   LVD      +   +    +   +     ++DL  R      + N   
Sbjct: 102 TFPFVLKACS--ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
            MP+  DV  W+++L     + N  +  HA  HL +
Sbjct: 160 KMPM-RDVVAWNAMLAG---YANHGMYHHAIAHLLD 191


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 200/693 (28%), Positives = 332/693 (47%), Gaps = 91/693 (13%)

Query: 34  FANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           +  V P       V  +C+   + E   ++H+ +I T   +D   +  + +     GD+ 
Sbjct: 195 WGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIR 254

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC- 140
            A  +  +  E ++  WN+ I   +++G+ Q    + L +          T + +L  C 
Sbjct: 255 MAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACA 314

Query: 141 -------------------------------------GKLKEVCQLFDKLPNRDVISWNT 163
                                                G L +  ++FD +P RD++ WN 
Sbjct: 315 GSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNA 374

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           +IS  +    + E L L  +M  EG   +  T+ +++ +   L  +   + +H   E+  
Sbjct: 375 LISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLG 434

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                 ++N L+D Y+KC  +  A ++  ++     D++ +T++++   + +  ++A +L
Sbjct: 435 FLSDSHVVNGLIDSYWKCDCLNYAYRVFEKH--GSYDIIAFTSMITALSQCDHGEDAIKL 492

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----- 338
           F EM+ + L     ++S +LN        +CAS+ A   G  VH ++ K Q   D     
Sbjct: 493 FMEMLRKGLDPDPFVLSSLLN--------ACASLSAYEQGKQVHAHLIKRQFMSDVFAGN 544

Query: 339 ----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                     +IE A   FS + EK V  W+++I   A  GH ++A+D+F  M +    P
Sbjct: 545 ALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISP 604

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           + +T  ++L AC+H GLVDE   + +    ++ I+   +HY CM+DLLGRAG L+++   
Sbjct: 605 NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMEL 664

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           + SMP   + ++W +LL A R H++ +L   A + L   +P   G HVLLAN YA AG  
Sbjct: 665 VNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMW 724

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE-------- 560
           DD++++R  ++D  +KK+   S +E    VH F  GD  +P + +IY  L+E        
Sbjct: 725 DDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKA 784

Query: 561 -----IEMTLQQQGLQETSL---QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
                +E+ L      E  L    H ERLAVAF LIST     IR+  NLRIC DCH+  
Sbjct: 785 GYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAF 844

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K  S + +REI+IRD  RFH F+ G CSCRDYW
Sbjct: 845 KFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 124/516 (24%), Positives = 206/516 (39%), Gaps = 73/516 (14%)

Query: 141 GKLKEVCQLFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           G + E   +FD+    R+ +SWN ++S Y         + +  +M   GV P+E     +
Sbjct: 149 GFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCV 208

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           ++A T  RDLE G+ +H  +  +         N LVDMY K G I  A  + G+  + E 
Sbjct: 209 VNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGK--VPET 266

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           DVV W   +SG V       A  L  +M    L+     +S +L        K+CA  GA
Sbjct: 267 DVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL--------KACAGSGA 318

Query: 320 LYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAA 364
              G  +H ++ K     DN               ++ A  +F  I ++++ LW ++I+ 
Sbjct: 319 FNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISG 378

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC------------------------ 400
            +      +A+ LF  M + G   ++ T  A+L +                         
Sbjct: 379 CSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSD 438

Query: 401 SH--GGLVDEGY--DFLSKKSRVYNIKPKMQ--HYGCMVDLLGRAGHLEESANFITSM-- 452
           SH   GL+D  +  D L+   RV+          +  M+  L +  H E++      M  
Sbjct: 439 SHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLR 498

Query: 453 -PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHVLLANIYAKAGRLDD 510
             + PD  + SSLL AC      +  +    HL +   ++D  A   L   YAK G ++D
Sbjct: 499 KGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIED 558

Query: 511 MSRIRMKLRDMGL---KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMT--- 564
                  L + G+      +G  L + G   H   + D+F+   +E ++  N I MT   
Sbjct: 559 ADLAFSGLPEKGVVSWSAMIG-GLAQHG---HGKRALDVFHRMVDE-HISPNHITMTSVL 613

Query: 565 --LQQQGLQETSLQHRERLAVAFGLISTSEKTTIRI 598
                 GL + + ++   +   FG+  T E     I
Sbjct: 614 CACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMI 649



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 157/359 (43%), Gaps = 32/359 (8%)

Query: 128 LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
           L+ V R  LL+   KC       ++FD++P+   +SW+++++ Y++  M R+ LG    M
Sbjct: 35  LFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSM 94

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
            +  V  +E  +  ++       D   G  LH     + +     + N LV MY   G +
Sbjct: 95  RSCSVRCNEFVLPVVLKCAP---DAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFV 151

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
            EA+ +       E + V W  L+S YVK++    A ++F EMV   +       S ++N
Sbjct: 152 DEARMVFDEAGC-ERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVN 210

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSE 349
                   +C     L  G  VH  + +     D               +I +A  +F +
Sbjct: 211 --------ACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGK 262

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + E +V  W + I+   + GH Q A++L L+M+ +G  P+  T  ++L AC+  G  + G
Sbjct: 263 VPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLG 322

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
                   +          +G +VD+  + G L+++      +P   D+ +W++L+  C
Sbjct: 323 RQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALISGC 379


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 189/567 (33%), Positives = 315/567 (55%), Gaps = 54/567 (9%)

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTM 164
           N I  +   NG+   +F +        VL+N   K   L +  QLFD++P R+VISW TM
Sbjct: 33  NLICRHLYFNGHQPMMFLV-------NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTM 85

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           IS Y+   ++++ L LL  M  +GV P+  T  S++ A   + D+ M   LH  + +  +
Sbjct: 86  ISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRM---LHCGIIKEGL 142

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRY-EIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           +    + + L+D++    K+GE +  L  + E+   D ++W +++ G+ +++  D A  L
Sbjct: 143 ESDVYVRSALIDVF---AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALEL 199

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK-------NQIS 336
           F  M     I+    ++ +L        ++C  +  L  G+  HV+I K       N   
Sbjct: 200 FKRMKRAGFIAEQATLTSVL--------RACTGLALLELGMQAHVHIVKYDQDLILNNAL 251

Query: 337 ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           +D      ++E A  +F+++ E++V  W+++I+  A  G++Q+A+ LF  M+ +GTKP+ 
Sbjct: 252 VDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNY 311

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           +T + +L ACSH GL+++G+ +     ++Y I P  +HYGCM+DLLG+AG L+++   + 
Sbjct: 312 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLN 371

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            M   PD   W +LL ACR  +N+ LAE+A K +   DP + G + +L+NIYA + + D 
Sbjct: 372 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDS 431

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE---------- 560
           +  IR ++RD+G+KK+ G S IE    +H F  GD  +P   E+   LN+          
Sbjct: 432 VEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGY 491

Query: 561 ------IEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                 +   L+ + ++++   H E+LA+AFGL++   +  IRI  NLRICGDCH F K+
Sbjct: 492 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKL 551

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSC 641
            S++ NR IVIRD  R+H FQ G+CSC
Sbjct: 552 ASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 135/306 (44%), Gaps = 53/306 (17%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           II++G E ++ + +++I          +VFA             K G+ ++   +FD++ 
Sbjct: 137 IIKEGLESDVYVRSALI----------DVFA-------------KLGEPEDALSVFDEMV 173

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
             D I WN++I  +         L L  +M   G   ++ T+ S++ A T L  LE+G  
Sbjct: 174 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 233

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
            H+ + +    +   L N LVDMY KCG + +A+++    ++ E DV+ W+T++SG  ++
Sbjct: 234 AHVHIVKYDQDL--ILNNALVDMYCKCGSLEDARRVFN--QMKERDVITWSTMISGLAQN 289

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
               EA +LF+ M         + I G+L         +C+  G L  G W +    K  
Sbjct: 290 GYSQEALKLFELMKSSGTKPNYITIVGVLF--------ACSHAGLLEDG-WYYFRSMKKL 340

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
             I+     Y    ++  K              AG    A+ L  EME    +PD VT+ 
Sbjct: 341 YGINPGREHYGCMIDLLGK--------------AGKLDDAVKLLNEME---CEPDAVTWR 383

Query: 395 ALLSAC 400
            LL AC
Sbjct: 384 TLLGAC 389


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/529 (36%), Positives = 296/529 (55%), Gaps = 42/529 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           Q+FD+ P +   +W+++IS +         L    +M  +GV PD+    S   A   LR
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
             ++GK++H    ++       + + LVDMY KCG+IG+A+ L    E+ E +VV W+ +
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFD--EMPERNVVSWSGM 198

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS-----IGALYH 322
           + GY + ++  EA  LF + +  ++       S ++        + C+S     +G L H
Sbjct: 199 IYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVI--------RVCSSSTFLELGKLIH 250

Query: 323 GIWVHV------YIKKNQISIDN----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
           G+ + +      ++    IS+ +    IE AY +F EI  +N+ LW S++ A A   H Q
Sbjct: 251 GLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQ 310

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +   LF EM   G KP+ + F+++L ACSH GLV++G ++ S   R Y I+P+ +HY  +
Sbjct: 311 RVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASL 369

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAG L+E+ + I  MP+ P  S+W +LL  CR H++ ++A      + E D  + 
Sbjct: 370 VDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSS 429

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G HVLL+N YA AGR ++ +R+R  LRD G+KK+ G S +E+G  VH FT+GD  +    
Sbjct: 430 GLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWV 489

Query: 553 EIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTI 596
           EIY  L E+E  +++ G                  ET   H ERLA+AFGLI+      I
Sbjct: 490 EIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPI 549

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R++ NLR+CGDCH+ +K  S+   R +++RDN RFHRF+ G+CSC DYW
Sbjct: 550 RVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 76/154 (49%), Gaps = 1/154 (0%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG ++   Q+FD++P R++  WN+M+         +   GL  +MG  G+ P+ + 
Sbjct: 271 LYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIX 330

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            +S++ A +    +E G+     + +  ++        LVD+  + GK+ EA  ++ +  
Sbjct: 331 FLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMP 390

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           +   + V W  L++G     + + A  + D ++E
Sbjct: 391 MRPTESV-WGALLTGCRIHKDTEMAAFVADRILE 423


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 290/545 (53%), Gaps = 50/545 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG + +  ++FD +P RD+ SW ++I+ Y    M  E LGLL  M      P+  T
Sbjct: 108 LYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFT 167

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             SL+ A        +G+ +H    +        + + L+DMY +CG++  A  +    +
Sbjct: 168 FASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFD--Q 225

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC- 314
           ++  + V W  L++G+ +  + +    +F EM +RN    T            F Y S  
Sbjct: 226 LESKNGVSWNALIAGFARKGDGETTLLMFAEM-QRNGFEAT-----------HFTYSSVF 273

Query: 315 ---ASIGALYHGIWVHVYIKKN----QISIDNIEL-----------AYDLFSEISEKNVY 356
              A IGAL  G WVH ++ K+       + N  L           A  +F  + +K+V 
Sbjct: 274 SAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVV 333

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W S++ A+A  G  ++A+  F EM + G   +Q+TF+++L+ACSHGGLV EG  +    
Sbjct: 334 TWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM 393

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            + YN++P++ HY  +VDLLGRAG L ++  FI  MP+ P  ++W +LL +CR H+N K+
Sbjct: 394 -KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKI 452

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
            + A  H+ E DP + G  VLL NIYA  G+ D  +R+R  ++  G+KK+   S +E   
Sbjct: 453 GQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIEN 512

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRER 580
            VH F + D  +P SEEIY    EI + +++ G                ++  LQ H E+
Sbjct: 513 SVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEK 572

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           +A+AF LI+     TIRI+ N+RICGDCHS  +  S+V+ REIV+RD  RFH F  G CS
Sbjct: 573 IALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCS 632

Query: 641 CRDYW 645
           C DYW
Sbjct: 633 CGDYW 637


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 295/549 (53%), Gaps = 49/549 (8%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV- 189
           T LL+   KCG L    ++FD +P R+ ++W+ +I  +       +   L   M A+G+ 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 190 --SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
             SP   ++ S + A   L  L MG+ LH  L +S +    +  N L+ MY K G I +A
Sbjct: 337 FLSP--TSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
             L    E+   D V ++ LVSGYV++   +EA  +F +M   N+      +  ++    
Sbjct: 395 IALFD--EMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI---- 448

Query: 308 EFKYKSCASIGALYHGIWVH--VYIK--KNQISIDN-----------IELAYDLFSEISE 352
                +C+ + AL HG   H  V I+   ++ SI N           I+L+  +F+ +  
Sbjct: 449 ----PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPS 504

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           +++  W ++IA Y + G  ++A  LFLEM   G  PD VTFI LLSACSH GLV EG  +
Sbjct: 505 RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHW 564

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
                  Y + P+M+HY CMVDLL R G L+E+  FI SMP+  DV +W +LL ACR ++
Sbjct: 565 FHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYK 624

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N+ L +   + + E  P   G  VLL+NIY+ AGR D+ + +R+  +  G KK  G S I
Sbjct: 625 NIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWI 684

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQ 576
           E  G +H F  GD  +P S EIY  L+ I + +++ G Q  +                + 
Sbjct: 685 EINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALIC 744

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H E+LA+A+G++S SE  TI +  NLR+CGDCH+ +K  S V  R I++RD  RFH F+ 
Sbjct: 745 HSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKN 804

Query: 637 GQCSCRDYW 645
           GQCSC D+W
Sbjct: 805 GQCSCGDFW 813



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 172/369 (46%), Gaps = 47/369 (12%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG-LLS-KM 184
           L   T LL+   KC  L +   +F  +P RD+++WN M++ Y   GMY   +  LLS +M
Sbjct: 160 LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 219

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL--------EESTMKISGSLL--NYL 234
               + P+  T+V+L+    +   L  G ++H +           S  K++  +L    L
Sbjct: 220 QMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTAL 279

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-- 292
           +DMY KCG +  A+++     +   + V W+ L+ G+V  +   +A  LF  M+ + L  
Sbjct: 280 LDMYAKCGSLLYARRVFD--AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 337

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------------- 338
           +S T + S +         ++CAS+  L  G  +H  + K+ +  D              
Sbjct: 338 LSPTSIASAL---------RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 388

Query: 339 -NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             I+ A  LF E++ K+   ++++++ Y   G A++A  +F +M+    +PD  T ++L+
Sbjct: 389 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 448

Query: 398 SACSHGGLVDEGYDFLSKKSRVY-NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
            ACSH   +  G    S  S +   +  +      ++D+  + G ++ S      MP   
Sbjct: 449 PACSHLAALQHGR--CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SR 505

Query: 457 DVSIWSSLL 465
           D+  W++++
Sbjct: 506 DIVSWNTMI 514



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 173/427 (40%), Gaps = 69/427 (16%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMG--MYREGLGLLSKMGAEGVSPDEVTMVS 198
           G L     LFD++P+ DV ++N +I  Y+S       +GL L  +M    V+P+  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A + L D   G+ +H     + ++    +   L+DMY KC  + +A  +     +  
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFA--TMPA 188

Query: 259 VDVVLWTTLVSGYVKSN--ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
            D+V W  +++GY          A  L  +M    L      +  +L   A+        
Sbjct: 189 RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ-------- 240

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            GAL  G  VH Y  +  +  +      +  S++++  V L T+++  YA  G    A  
Sbjct: 241 QGALAQGTSVHAYCIRACLHPNR-----NSKSKLTD-GVLLGTALLDMYAKCGSLLYARR 294

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           +F  M       ++VT+ AL+           G+   S+ ++ + +   M          
Sbjct: 295 VFDAMPAR----NEVTWSALIG----------GFVLCSRMTQAFLLFKAM---------- 330

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAH 495
                L +   F++   I       +S LRAC    ++++ E     L ++    D  A 
Sbjct: 331 -----LAQGLCFLSPTSI-------ASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 378

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
             L ++YAKAG +D    +     +M +K  + YS            SG + N  +EE +
Sbjct: 379 NSLLSMYAKAGLIDQAIAL---FDEMAVKDTVSYS---------ALVSGYVQNGRAEEAF 426

Query: 556 LMLNEIE 562
           L+  +++
Sbjct: 427 LVFKKMQ 433


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 217/711 (30%), Positives = 336/711 (47%), Gaps = 107/711 (15%)

Query: 18  KLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQIST 77
           ++ R G +P +       N   ++        S  +++  + +H H      + D ++  
Sbjct: 222 QMERGGCLPNLTTYLSILNASAIT--------STGALEWVKEVHKHAGKAGFISDLRVGN 273

Query: 78  QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL------- 130
            +       G +  A+ +     + ++  WN++I     NG   E F I+L +       
Sbjct: 274 ALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVP 333

Query: 131 --VTRTVLLN--------------------------------------KCGKLKEVCQLF 150
              T   LLN                                      +CG + +   +F
Sbjct: 334 DSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIF 393

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           DKL  R+V +WN MI         RE L L  +M  EG  PD  T V+++SA      LE
Sbjct: 394 DKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALE 453

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
             K +H +  ++ + +   + N LV MY KCG    A+++    ++ E +V  WT ++SG
Sbjct: 454 WVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFD--DMVERNVTTWTVMISG 510

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL-------YHG 323
             +     EA  LF +M+   ++        +L+        +CAS GAL        H 
Sbjct: 511 LAQHGCGHEAFSLFLQMLREGIVPDATTYVSILS--------ACASTGALEWVKEVHSHA 562

Query: 324 I-------------WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           +              VH+Y K    S+D+   A  +F ++ E++VY WT +I   A  G 
Sbjct: 563 VNAGLVSDLRVGNALVHMYAKCG--SVDD---ARRVFDDMLERDVYSWTVMIGGLAQHGR 617

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
              A+DLF++M+  G KP+  +F+A+LSACSH GLVDEG       ++ Y I+P M+HY 
Sbjct: 618 GLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYT 677

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           CMVDLLGRAG LEE+ +FI +MPI P  + W +LL AC  + N+++AE A K   +  P 
Sbjct: 678 CMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK 737

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
           +   +VLL+NIYA  G  +    +R  ++  G++K+ G S IE    +H F  GD  +P 
Sbjct: 738 SASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPE 797

Query: 551 SEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKT 594
           S+EIY  L ++   L+ +G                 ++    H E+LA+ +GL+ T  + 
Sbjct: 798 SKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRN 857

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            IR+  NLR+C DCH+  K  S+V  REIV RD  RFH F+ G CSC DYW
Sbjct: 858 PIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 137/308 (44%), Gaps = 28/308 (9%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
           W   I   +I    Q    +   LV   V   KCG + +   +FDK+  R+VISW  MI 
Sbjct: 48  WGKKIHAHIIQSGFQSDVRVETALVNMYV---KCGSIDDAQLIFDKMVERNVISWTVMIG 104

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
                G  +E      +M  EG  P+  T VS+++A      LE  K +H     + + +
Sbjct: 105 GLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL 164

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
              + N LV MY K G I +A+ +     + E D+  WT ++ G  +     EA  LF +
Sbjct: 165 DLRVGNALVHMYAKSGSIDDARVVFD--GMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 222

Query: 287 MVER-----NLISW-------TLMISGMLNQDAEFKYKSCASIGAL----YHGIWVHVYI 330
           M ER     NL ++        +  +G L    E  +K     G +         +H+Y 
Sbjct: 223 M-ERGGCLPNLTTYLSILNASAITSTGALEWVKEV-HKHAGKAGFISDLRVGNALIHMYA 280

Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           K    SID+  L +D    + +++V  W ++I   A  G   +A  +FL+M++ G  PD 
Sbjct: 281 KCG--SIDDARLVFD---GMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDS 335

Query: 391 VTFIALLS 398
            T+++LL+
Sbjct: 336 TTYLSLLN 343



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 19/250 (7%)

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MI  Y   G   + + + S+M  EG  P+E+T +S++ A      L+ GK +H  + +S 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
            +    +   LV+MY KCG I +AQ +  +  + E +V+ WT ++ G        EA   
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDK--MVERNVISWTVMIGGLAHYGRGQEAFHR 118

Query: 284 FDEMVERNLISWTLMISGMLNQDAE---FKYKSCASIGALYHGI---------WVHVYIK 331
           F +M     I  +     +LN +A     ++       A+  G+          VH+Y K
Sbjct: 119 FLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK 178

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
               SID+  + +D    + E++++ WT +I   A  G  Q+A  LFL+ME  G  P+  
Sbjct: 179 SG--SIDDARVVFD---GMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLT 233

Query: 392 TFIALLSACS 401
           T++++L+A +
Sbjct: 234 TYLSILNASA 243


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 293/549 (53%), Gaps = 49/549 (8%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV- 189
           T LL+   KCG L    ++FD +P R+ ++W+ +I  +       +   L   M A+G+ 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 190 --SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
             SP  +   S + A   L  L MG+ LH  L +S +    +  N L+ MY K G I +A
Sbjct: 222 FLSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
             L     +   D V ++ LVSGYV++   +EA  +F +M   N+      +  ++    
Sbjct: 280 IALFDEMAVK--DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI---- 333

Query: 308 EFKYKSCASIGALYHGIWVH--VYIK--KNQISIDN-----------IELAYDLFSEISE 352
                +C+ + AL HG   H  V I+   ++ SI N           I+L+  +F+ +  
Sbjct: 334 ----PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPS 389

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           +++  W ++IA Y + G  ++A  LFLEM   G  PD VTFI LLSACSH GLV EG  +
Sbjct: 390 RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHW 449

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
                  Y + P+M+HY CMVDLL R G L+E+  FI SMP+  DV +W +LL ACR ++
Sbjct: 450 FHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYK 509

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N+ L +   + + E  P   G  VLL+NIY+ AGR D+ + +R+  +  G KK  G S I
Sbjct: 510 NIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWI 569

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQ 576
           E  G +H F  GD  +P S EIY  L+ I + +++ G Q  +                + 
Sbjct: 570 EINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALIC 629

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H E+LA+A+G++S SE  TI +  NLR+CGDCH+ +K  S V  R I++RD  RFH F+ 
Sbjct: 630 HSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKN 689

Query: 637 GQCSCRDYW 645
           GQCSC D+W
Sbjct: 690 GQCSCGDFW 698



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 172/369 (46%), Gaps = 47/369 (12%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG-LLS-KM 184
           L   T LL+   KC  L +   +F  +P RD+++WN M++ Y   GMY   +  LLS +M
Sbjct: 45  LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 104

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL--------EESTMKISGSLL--NYL 234
               + P+  T+V+L+    +   L  G ++H +           S  K++  +L    L
Sbjct: 105 QMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTAL 164

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-- 292
           +DMY KCG +  A+++     +   + V W+ L+ G+V  +   +A  LF  M+ + L  
Sbjct: 165 LDMYAKCGSLLYARRVFD--AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 222

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------------- 338
           +S T + S +         ++CAS+  L  G  +H  + K+ +  D              
Sbjct: 223 LSPTSIASAL---------RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 273

Query: 339 -NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             I+ A  LF E++ K+   ++++++ Y   G A++A  +F +M+    +PD  T ++L+
Sbjct: 274 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 333

Query: 398 SACSHGGLVDEGYDFLSKKSRVY-NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
            ACSH   +  G    S  S +   +  +      ++D+  + G ++ S      MP   
Sbjct: 334 PACSHLAALQHGR--CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SR 390

Query: 457 DVSIWSSLL 465
           D+  W++++
Sbjct: 391 DIVSWNTMI 399


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 188/539 (34%), Positives = 290/539 (53%), Gaps = 29/539 (5%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
           T LL+   KC +L   C++F  +P R+ ++W+ +I  +       E   L   M  EG+ 
Sbjct: 244 TALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLC 303

Query: 191 PDEVTMV-SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
               T V S +     L DL MG  LH  + +S +    +  N L+ MY K G I EA  
Sbjct: 304 FLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATM 363

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL---ISWTLMISGMLNQD 306
                EI   D + +  L+SG V++ + +EA  +F +M   N+   I+  + +    +  
Sbjct: 364 FFD--EIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHL 421

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVI 362
           A  ++  C+    +  G+ +   I  + I +      I+L+  +F ++  ++V  W ++I
Sbjct: 422 AALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMI 481

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           A Y + G  ++A  LFL M+  G  PD VTFI L++ACSH GLV EG  +    +  Y I
Sbjct: 482 AGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGI 541

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
            P+M+HY CMVDLL R G L+E+  FI SMP+  DV +W +LL ACR H+N+ L +   +
Sbjct: 542 LPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSR 601

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            + +  P   G  VLL+NI++ AGR D+ + +R+  +  G KK  GYS IE  G +H F 
Sbjct: 602 IIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFV 661

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQHRERLAVAFG 586
            GD  +P S +IY  L+ I + +++ G Q  +                L H E+LA+AFG
Sbjct: 662 GGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFG 721

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++S +E  TI +  NLR+CGDCH+ +K  + V NR I++RD  RFH F+ GQCSC ++W
Sbjct: 722 VLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 169/369 (45%), Gaps = 43/369 (11%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG-LLSKMG 185
           L   T L++   +C +      +F K+P RDV++WN M++ Y + GMY   +  LL    
Sbjct: 135 LFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQD 194

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF-----LEESTMKISGSLLNYLVDMYFK 240
             G+ P+  T+VSL+    +   L  G ++H +     LE++  ++   +   L+DMY K
Sbjct: 195 HGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQV--LIGTALLDMYAK 252

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL--ISWTLM 298
           C ++  A ++   + +   + V W+ L+ G+V  +   EA  LF +M+   L  +S T +
Sbjct: 253 CKQLVYACRVF--HGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSV 310

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELA 343
            S +         + CAS+  L+ G  +H  I K+ I  D                I  A
Sbjct: 311 ASAL---------RVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEA 361

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
              F EI+ K+   + ++++     G A++A  +F +M+    +PD  T ++L+ ACSH 
Sbjct: 362 TMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHL 421

Query: 404 GLVDEGYDFLSKKSRVY-NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
             +  G    S  S +   +  +      ++D+  + G ++ S      MP   DV  W+
Sbjct: 422 AALQHGK--CSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMP-ARDVVSWN 478

Query: 463 SLLRACRCH 471
           +++     H
Sbjct: 479 TMIAGYGIH 487



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 149/361 (41%), Gaps = 35/361 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L    Q+FD++P  D  ++N +I  Y+ +G +   + L   M    V+P++ T   ++
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A + L DL  G+ +H     + +     +   L+D+Y +C + G A+ +  +  +   D
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR--D 165

Query: 261 VVLWTTLVSGYVKSNERDEA-RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           VV W  +++GY        A   L D      L      +  +L   A+         GA
Sbjct: 166 VVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQH--------GA 217

Query: 320 LYHGIWVHVYI-------KKNQISIDNIEL-----------AYDLFSEISEKNVYLWTSV 361
           L+ G  +H Y         + Q+ I    L           A  +F  +  +N   W+++
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA-LLSACSHGGLVDEGYDFLSKKSRVY 420
           I  + +     +A +LF +M   G      T +A  L  C+    +  G    +  ++  
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAK-S 336

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I   +     ++ +  +AG + E+  F   + +   +S + +LL  C   QN K AE A
Sbjct: 337 GIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCV--QNGK-AEEA 392

Query: 481 F 481
           F
Sbjct: 393 F 393



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 7/156 (4%)

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
           +  IS   + LA  +F  I   +   + ++I AY+  G    AIDL+  M      P++ 
Sbjct: 42  EQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKY 101

Query: 392 TFIALLSACSHGGLVD-EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           TF  +L ACS   LVD      +   +    +   +     ++DL  R      + N   
Sbjct: 102 TFPFVLKACS--ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
            MP+  DV  W+++L     + N  +  HA  HL +
Sbjct: 160 KMPM-RDVVAWNAMLAG---YANHGMYHHAIAHLLD 191


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 298/573 (52%), Gaps = 81/573 (14%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     LF + PN +V  W  +I+ +    ++   L   S+M    + P+  T+ SL+
Sbjct: 69  GHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLL 128

Query: 201 SART-------KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            A T           ++ G + HL++              LVD Y + G +  AQKL   
Sbjct: 129 KACTLHPARAVHSHAIKFGLSSHLYVSTG-----------LVDAYARGGDVASAQKLFD- 176

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML-----NQDAE 308
             + E  +V +T +++ Y K     EAR LF+ M  ++++ W +MI G       N+   
Sbjct: 177 -AMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALV 235

Query: 309 FKYK-------------------------SCASIGALYHGIWVHVYIKKNQISID----- 338
           F  K                         SC  +GAL  G WVH Y++ N I ++     
Sbjct: 236 FFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGT 295

Query: 339 ----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                     ++E A  +F  +  K+V  W S+I  Y + G + +A+ LF EM   G KP
Sbjct: 296 ALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKP 355

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
             +TF+A+L+AC+H GLV +G++        Y ++PK++HYGCMV+LLGRAG ++E+ + 
Sbjct: 356 SDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDL 415

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           + SM + PD  +W +LL ACR H NV L E   + L      + G +VLL+N+YA A   
Sbjct: 416 VRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNW 475

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
             ++++R  ++  G++K+ G S IE    VH+F +GD  +P S++IY ML ++   L+++
Sbjct: 476 VGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKER 535

Query: 569 GL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
                            +E SL+ H E+LA+AFGLISTS    I+IV NLR+C DCH+ M
Sbjct: 536 HYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVM 595

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K+ S++  R+I++RD  RFH F+ G CSCRDYW
Sbjct: 596 KIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 158/369 (42%), Gaps = 59/369 (15%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P +  +  + ++C+ +     +HSH I   L     +ST + +     GD+  AQ+    
Sbjct: 119 PNAFTLSSLLKACT-LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQK---- 173

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
                           L +  P+     Y  ++T      K G L E   LF+ +  +DV
Sbjct: 174 ----------------LFDAMPERSLVSYTAMLT---CYAKHGMLPEARVLFEGMGMKDV 214

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEG-------VSPDEVTMVSLISARTKLRDLEM 211
           + WN MI  Y   G   E L    KM           V P+E+T+V+++S+  ++  LE 
Sbjct: 215 VCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALEC 274

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           GK +H ++E + +K++  +   LVDMY KCG + +A+K+    E    DVV W +++ GY
Sbjct: 275 GKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGK--DVVAWNSMIMGY 332

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
                 DEA +LF EM    +    +    +L         +CA  G +  G  V     
Sbjct: 333 GIHGFSDEALQLFHEMCCIGVKPSDITFVAVLT--------ACAHAGLVSKGWEV----- 379

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                 D+++  Y +     E  V  +  ++     AG  Q+A DL   ME    +PD V
Sbjct: 380 -----FDSMKDGYGM-----EPKVEHYGCMVNLLGRAGRMQEAYDLVRSME---VEPDPV 426

Query: 392 TFIALLSAC 400
            +  LL AC
Sbjct: 427 LWGTLLWAC 435



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 29/174 (16%)

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            L+H   ++  ++++  S+ ++  +  LF      NV+LWT +I A+A       A+  +
Sbjct: 50  GLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYY 109

Query: 379 LEMEETGTKPDQVTFIALLSAC---------SHG-------------GLVD---EGYDFL 413
            +M     +P+  T  +LL AC         SH              GLVD    G D  
Sbjct: 110 SQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVA 169

Query: 414 SKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           S + ++++  P+  +  Y  M+    + G L E+      M +  DV  W+ ++
Sbjct: 170 SAQ-KLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGM-KDVVCWNVMI 221


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 200/616 (32%), Positives = 320/616 (51%), Gaps = 72/616 (11%)

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY-----LYLVTRTVLLN---KCGKL 143
           A+++     E     WN ++   + NG  +E   ++       L++   L+    +  KL
Sbjct: 161 AREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKL 220

Query: 144 KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
            +   LFDK+P RD ISWNTMIS Y   G    GL    ++  E  + D  T  +++S  
Sbjct: 221 GDARWLFDKMPVRDAISWNTMISGYAQGG----GLSQARRLFDESPTRDVFTWTAMVSGY 276

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
            +   L+  K    F +E   K   S  N ++  Y +  K+  A++L        +    
Sbjct: 277 VQNGMLDEAKT---FFDEMPEKNEVSY-NAMIAGYVQTKKMDIARELFESMPCRNISS-- 330

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------------LNQDAE 308
           W T+++GY +  +  +AR+ FD M +R+ +SW  +I+G                + QD E
Sbjct: 331 WNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGE 390

Query: 309 --------FKYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYD 345
                       +CA I AL  G  +H            ++    +++     +I+ A D
Sbjct: 391 SLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
            F  I EK+V  W +++A YA  G  ++A+ +F  M+  G KPD++T + +LSACSH GL
Sbjct: 451 TFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGL 510

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           +D G ++    ++ Y + P  +HY CM+DLLGRAG LEE+ + I +MP  P  + W +LL
Sbjct: 511 LDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALL 570

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            A R H N +L E A + + + +P N G +VLL+N+YA +GR  D  ++R K+RD+G++K
Sbjct: 571 GASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQK 630

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
             GYS +E    +H F+ GD  +P  E IY  L E+++ ++++G                
Sbjct: 631 VPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEE 690

Query: 571 QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           +E  L+ H E+LAVAFG+++      IR++ NLR+C DCHS +K  S++  R I++RD+ 
Sbjct: 691 KEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSH 750

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F  G CSC DYW
Sbjct: 751 RFHHFNEGFCSCGDYW 766



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 58/329 (17%)

Query: 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           ++ + V  T  +  C +L +  +LFD +P +DV+SWN+++S Y   G   E   +   M 
Sbjct: 111 LFSWNVMLTGYVRNC-RLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            +    + ++   L++A      +E        L ES         N L+  + +  K+G
Sbjct: 170 EK----NSISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRKKKLG 221

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS----- 300
           +A+ L  +  +   D + W T++SGY +     +ARRLFDE   R++ +WT M+S     
Sbjct: 222 DARWLFDKMPVR--DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279

Query: 301 GMLNQDAEF----KYKSCASIGALYHGIWVHVYIKKNQIS-------------------- 336
           GML++   F      K+  S  A+  G   +V  KK  I+                    
Sbjct: 280 GMLDEAKTFFDEMPEKNEVSYNAMIAG---YVQTKKMDIARELFESMPCRNISSWNTMIT 336

Query: 337 ----IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
               I +I  A   F  + +++   W ++IA YA +GH ++A+++F+E+++ G   ++ T
Sbjct: 337 GYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRAT 396

Query: 393 FIALLSACS-----------HGGLVDEGY 410
           F   LS C+           HG  V  GY
Sbjct: 397 FGCALSTCADIAALELGKQIHGQAVKMGY 425



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 174/375 (46%), Gaps = 32/375 (8%)

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           ++ + D++ WN  IS +   G     L + + M         V+  ++IS   +     +
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR----SSVSYNAMISGYLRNSKFNL 98

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
            +NL   + E  +       N ++  Y +  ++G+A++L     + E DVV W +L+SGY
Sbjct: 99  ARNLFDQMPERDL----FSWNVMLTGYVRNCRLGDARRLFDL--MPEKDVVSWNSLLSGY 152

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKSCASIGALYHGIWVH 327
            ++   DEAR +FD M E+N ISW  +++  ++    ++A   ++S +    +     + 
Sbjct: 153 AQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMG 212

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
            +++K ++       A  LF ++  ++   W ++I+ YA  G   +A  LF   +E+ T+
Sbjct: 213 GFVRKKKLGD-----ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF---DESPTR 264

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
            D  T+ A++S     G++DE   F  +      +      Y  M+    +   ++ +  
Sbjct: 265 -DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARE 318

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
              SMP   ++S W++++       ++  A   F  + + D ++  A  ++A  YA++G 
Sbjct: 319 LFESMPC-RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA--IIAG-YAQSGH 374

Query: 508 LDDMSRIRMKLRDMG 522
            ++   + ++++  G
Sbjct: 375 YEEALNMFVEIKQDG 389


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 297/567 (52%), Gaps = 68/567 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +      F+++     + WN MIS Y   GM  E   L  +M ++ + PDE T  SL+
Sbjct: 244 GDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLL 303

Query: 201 SARTKLRDLEMGKNLHL--------FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           SA         GK++H         F+ E+ + ++    N LV +Y K GKI  A K+  
Sbjct: 304 SACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVN----NALVTLYSKSGKIAVATKIFD 359

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA- 307
              +   DVV W T++SGY++S   D A R+F EM  ++ +SW +M+SG     L +DA 
Sbjct: 360 SMTLK--DVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDAL 417

Query: 308 --------------EFKYK----SCASIGALYHGIWVHVYIKKNQISIDN---------- 339
                         ++ Y     +C  +GAL HG  +H ++ +      N          
Sbjct: 418 KLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMY 477

Query: 340 -----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                ++ A  +F  +   +   W ++I+A    GH ++A++LF +M   G  PD+++F+
Sbjct: 478 ARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFL 537

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +L+AC+H GLVD+G+ +     R + I P   HY  ++DLLGRAG + E+ + I +MP 
Sbjct: 538 TILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPF 597

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            P  +IW ++L  CR + +++L  +A   L +  P +DG ++LL+N Y+ AGR  D +R+
Sbjct: 598 EPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARV 657

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----- 569
           R  +RD G+KK+ G S IE G  VH F  GD  +P + E+Y  L  +   +++ G     
Sbjct: 658 RKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDT 717

Query: 570 ---LQETS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
              LQ+ +          H ERLAV+FGL+      T+ ++ NL+ICGDCH+ M   S+ 
Sbjct: 718 KFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRA 777

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
             REIV+RD  RFH F+ G+CSC +YW
Sbjct: 778 VGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 180/439 (41%), Gaps = 86/439 (19%)

Query: 60  IHSHLITTNLMRDP---QISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLI 116
           +H+ L+T  L+ DP    ++ ++      + DL     + R    P       +    L+
Sbjct: 44  LHARLLTAALLHDPSHPHLTLRLLHLYTLSPDLATPAVLFRADPGP-------VAATSLV 96

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMY 174
           + Y                     G+L++    FD +P   RD +  N MIS +    + 
Sbjct: 97  SAY------------------AVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLA 138

Query: 175 REGLGLLSKMGA--EGVSPDEVTMVSLISARTKLRDLEMGK--NLHLFLEESTMKISGSL 230
              + +   + A  + + PD+ +  SL+SA  ++ DL +     LH  + +       S+
Sbjct: 139 APAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSV 198

Query: 231 LNYLVDMYFKCGKIG---EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            N L+ +Y KC   G   +A+K+L   E+ E D + WTT+V G+V+  +   AR  F+E+
Sbjct: 199 SNALIALYMKCDAPGVTRDARKVLD--EMPEKDELTWTTIVVGHVRKGDVHAARSAFEEI 256

Query: 288 VERNLISWTLMISGMLNQDA-------------------EFKYKS----CASIGALYHGI 324
                + W  MISG +                       EF + S    CA+ G   HG 
Sbjct: 257 DGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGK 316

Query: 325 WVHV--------YIKKNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAY 365
            VH         ++ +  + ++N           I +A  +F  ++ K+V  W ++++ Y
Sbjct: 317 SVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGY 376

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
             +G    A  +F EM        +++++ ++S   HGGL ++     ++  R  ++KP 
Sbjct: 377 IESGCLDNAARIFKEMPYK----SELSWMVMVSGYVHGGLAEDALKLFNQM-RSEDVKPC 431

Query: 426 MQHYGCMVDLLGRAGHLEE 444
              Y   V   G  G L+ 
Sbjct: 432 DYTYAGAVAACGELGALKH 450



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG +K+   +F  +PN D +SWN MIS     G  RE L L  +M A+G+ PD ++ ++
Sbjct: 479 RCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLT 538

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           +++A      ++ G      +E     IS    +Y  L+D+  + G+IGEA+ L+     
Sbjct: 539 ILTACNHAGLVDDGFQYFESMERD-FGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPF 597

Query: 257 DEVDVVLWTTLVSG 270
           +    + W  ++SG
Sbjct: 598 EPTPAI-WEAILSG 610


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 204/662 (30%), Positives = 332/662 (50%), Gaps = 114/662 (17%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG---DLGYAQQIIRQGD 100
           V+ V   C S+ E  +IH+ +I TNL+      +++  F   +G    L YA  +  +  
Sbjct: 9   VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 101 EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVIS 160
            P     NS I   LI G+                                  P   +I 
Sbjct: 69  HP-----NSFIFFALIKGFSDT-----------------------------SNPVESLIL 94

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           +  M+SC      Y  G+              E ++ S++ A  KL   + G+ +H  + 
Sbjct: 95  YARMLSCLN----YSSGV--------------EFSIPSVLKACGKLLAFDEGRQVHGQVL 136

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           ++ +     + N +V MY   G+I  A+++  R  +   DVV W ++++GY+K+ E + A
Sbjct: 137 KTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR--MPNRDVVSWNSMIAGYLKAGEIELA 194

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFK-----------------------YKSCASI 317
           +++F+ M ++++++WT MIS  +      K                         + A +
Sbjct: 195 KKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADL 254

Query: 318 GALYHGIWVHVYIKKNQISIDN----------------IELAYDLFSEISEK-NVYLWTS 360
           G +  G W+H Y+  N+I + +                IE AY +F  IS + N+  W S
Sbjct: 255 GFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNS 314

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+  A+ G A++A+D+F+EME    +P+++TF+ LLS CSHGGLV+EG  +       Y
Sbjct: 315 MISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKY 374

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I P++QHYGCM+DL GRAG LE++   I +MP   D+  W ++L A   H ++++ + A
Sbjct: 375 KIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSA 434

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
                E  P +  ++VLL+NIYAKAGR DD+++IR+ +R  G+KK  G S +   G VH+
Sbjct: 435 ALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHE 494

Query: 541 FTSG-DIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAV 583
           F  G ++ + +S ++   + E+   L+ QG +    Q                H E++A+
Sbjct: 495 FLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAI 554

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGLI  ++   I IV NLR+C DCH FMK+ S+VYNR+I++RD  RFH F+ G CSC +
Sbjct: 555 AFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNE 614

Query: 644 YW 645
           YW
Sbjct: 615 YW 616



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 171/383 (44%), Gaps = 61/383 (15%)

Query: 40  VSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQII 96
           V   +  V ++C    + DE  ++H  ++ T+L  DP +   +    +  G++  A+++ 
Sbjct: 108 VEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVF 167

Query: 97  RQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR 156
            +    ++  WNS+I   L                       K G+++   ++F+ + ++
Sbjct: 168 DRMPNRDVVSWNSMIAGYL-----------------------KAGEIELAKKVFETMSDK 204

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
           DV++W +MIS Y       + L L  +M + G+ PD   +VS++SA   L  +E GK LH
Sbjct: 205 DVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLH 264

Query: 217 LFLEESTMKI-SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
            ++  + +++ SG + + L+DMY KCG I  A  +  R      ++  W +++SG     
Sbjct: 265 AYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVF-RSISHRRNIGDWNSMISGLAIHG 323

Query: 276 ERDEARRLFDEM----VERNLISWTLMIS----GMLNQDAEF-------KYKSCASIGAL 320
              EA  +F EM    +E N I++  ++S    G L ++ +F       KYK    I   
Sbjct: 324 LAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQ-- 381

Query: 321 YHGIWVHVYIKKNQIS-----IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           ++G  + ++ +  ++      I N+    DL +         W ++++A    GH +   
Sbjct: 382 HYGCMIDLFGRAGRLEDALGVIQNMPFEADLLA---------WKAILSASMKHGHIEIGK 432

Query: 376 DLFLEMEETGTKPDQVTFIALLS 398
              L   E    PD  +   LLS
Sbjct: 433 SAALRAIELA--PDDSSSYVLLS 453


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 184/534 (34%), Positives = 283/534 (52%), Gaps = 46/534 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K GKL    ++F +L   DV+SW  MI+ YT    + E L L  +M  +G+  D +   S
Sbjct: 485 KHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFAS 544

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            ISA   ++ L+ G+ +H     S      S+ N LV +Y +CGK+ EA       +I  
Sbjct: 545 AISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFD--QIYA 602

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D V W +LVSG+ +S   +EA  +F +M +  L   +      ++        + A+I 
Sbjct: 603 KDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVS--------AAANIA 654

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYL-----------WTSVIAAYAM 367
            +  G  +H  I+K           YD  +E+S   + L           W S+I  Y+ 
Sbjct: 655 NVRIGKQIHGMIRKT---------GYDSETEVSNALITLYAKCGTIDDISWNSMITGYSQ 705

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G   +A+ LF +M++    P+ VTF+ +LSACSH GLVDEG  +    S  +N+ PK +
Sbjct: 706 HGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPE 765

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HY C+VDLLGR+G L  +  F+  MPI PD  +W +LL AC  H+N+ + E A  HL E 
Sbjct: 766 HYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLEL 825

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P +   +VL++N+YA +G+ D   R R  ++D G+KK+ G S +E    VH F +GD  
Sbjct: 826 EPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQN 885

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTS 591
           +P ++ IY  L  ++    + G                   T + H ERLA+AFGL+S +
Sbjct: 886 HPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLT 945

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             T + +  NLR+C DCH+++K  S++ +R I++RD+ RFH F+ G CSC+DYW
Sbjct: 946 SSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 188/473 (39%), Gaps = 81/473 (17%)

Query: 46  MVERSCS----SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE 101
           +V R CS    S    E+IH+  IT+       I   + +     G L  A+++      
Sbjct: 168 VVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKA 227

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT--------------------------- 134
            +   W ++I     NGY +E   ++  +V                              
Sbjct: 228 RDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETY 287

Query: 135 ------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
                  L ++ G L    Q+F  +  RD +S+N++IS     G     L L  KM  + 
Sbjct: 288 VCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDC 347

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
             PD VT+ SL+SA   +  L  GK  H +  ++ M     +   L+D+Y KC  I  A 
Sbjct: 348 QKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAH 407

Query: 249 KLLGRY-EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           +    Y ++D +                  +++ ++F +M    ++        +L    
Sbjct: 408 EFFLCYGQLDNL------------------NKSFQIFTQMQIEGIVPNQFTYPSIL---- 445

Query: 308 EFKYKSCASIGALYHGIWVHVYIKK---------NQISID------NIELAYDLFSEISE 352
               K+C ++GA   G  +H  + K         + + ID       ++ A  +F  + E
Sbjct: 446 ----KTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKE 501

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
            +V  WT++IA Y       +A++LF EM++ G K D + F + +SAC+    +D+G   
Sbjct: 502 NDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ- 560

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           +  +S +      +     +V L  R G + E+      +    +VS W+SL+
Sbjct: 561 IHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVS-WNSLV 612



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 171/411 (41%), Gaps = 51/411 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVSL 199
           G L     +FD++P R +  WN + + + +  +     GL  +M  + V  DE +  V L
Sbjct: 111 GDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVL 170

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
                        + +H     S  + S  + N L+D+YFK G +  A+K+     +   
Sbjct: 171 RGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFE--NLKAR 228

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMV-----ERNLISWTLMISGM-LNQDAEFKYKS 313
           D V W  ++SG  ++   +EA  LF ++V     +     +   + G+ L Q    +   
Sbjct: 229 DSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYV 288

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           C ++  LY                 N+  A  +F  +S+++   + S+I+  A  G+  +
Sbjct: 289 CNALVTLYS-------------RSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINR 335

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH----Y 429
           A+ LF +M     KPD VT  +LLSAC+  G +  G  F S     Y IK  M       
Sbjct: 336 ALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHS-----YAIKAGMTSDIVVE 390

Query: 430 GCMVDL----------------LGRAGHLEESANFITSMPIP---PDVSIWSSLLRACRC 470
           G ++DL                 G+  +L +S    T M I    P+   + S+L+ C  
Sbjct: 391 GSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTT 450

Query: 471 HQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
                L E     + +T    N     +L ++YAK G+LD   +I  +L++
Sbjct: 451 LGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKE 501



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 150/352 (42%), Gaps = 34/352 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G L    ++F+ L  RD +SW  MIS  +  G   E + L  ++              
Sbjct: 211 KNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI-------------- 256

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA TK+   E GK LH  + +        + N LV +Y + G +  A+++   + + +
Sbjct: 257 VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIF--HCMSQ 314

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D V + +L+SG  +    + A  LF +M         + ++ +L+        +CAS+G
Sbjct: 315 RDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLS--------ACASVG 366

Query: 319 ALYHGIWVHVYIKKNQISIDNIELA--YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           AL +G   H Y  K  ++ D +      DL+ + S+  +         Y    +  K+  
Sbjct: 367 ALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSD--IKTAHEFFLCYGQLDNLNKSFQ 424

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY--GCMVD 434
           +F +M+  G  P+Q T+ ++L  C+  G  D G       ++V     +   Y    ++D
Sbjct: 425 IFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQI---HTQVLKTGFQFNVYVSSVLID 481

Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +  + G L+ +      +    DV  W++++     H     A + FK + +
Sbjct: 482 MYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYTQHDKFTEALNLFKEMQD 532


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 208/569 (36%), Positives = 308/569 (54%), Gaps = 57/569 (10%)

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
           E+   NGY  + F I         L+N   K G L E   LFD++P+R+V+SW TMIS Y
Sbjct: 40  EHVFSNGYEPKTFLI-------NTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAY 92

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM--GKNLHLFLEESTMKI 226
           ++  +  + L  L  M  EGV P+  T  S++ A   L +L    G  L + LE      
Sbjct: 93  SNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLRQLHGSILKVGLESDVFVR 152

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           S      L+D Y K G+  +A  +    E+   D+V+W +++ G+ ++++ DE   L+  
Sbjct: 153 SA-----LIDTYSKLGEQHDALNVFN--EMITGDLVVWNSIIGGFAQNSDGDETLHLYKR 205

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK-------NQISID- 338
           M   + ++    ++ +L        ++C  +  L  G  VHV++ K       N   +D 
Sbjct: 206 MKRADFVADQSTLTSVL--------RACTGLALLELGRQVHVHVLKYDQDLILNNALLDM 257

Query: 339 -----NIELAYDLFSEI-SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                ++E A  LF+ + +EK+V  W+++IA  A  G +  A+ LF  M+  G KP+ +T
Sbjct: 258 YCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYIT 317

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
            + +L ACSH GLV++G+ +       + I P  +HYGC++DLLGRAG L+E+   I  M
Sbjct: 318 ILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEM 377

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
              PD   W  LL ACR H+NV LA +A K + + DP + G ++LL+NIYA + + +D++
Sbjct: 378 NHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVA 437

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--- 569
            +R K+R  G+KK  G S IE    VH F  GD  +P  EEI   L+++   L + G   
Sbjct: 438 EVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVP 497

Query: 570 -----LQ-------ETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
                LQ       E SLQ H E+LA+ FGL+S   + TI I  NLRICGDCH F K+ S
Sbjct: 498 DTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVS 557

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           Q+ NR IVIRD  R+H F+GG CSC DYW
Sbjct: 558 QLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 19/294 (6%)

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           +  M    +S D +T   LI        ++  + +H  +  +  +    L+N L++MY K
Sbjct: 4   MEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVK 63

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR----LFDEMVERNLISWT 296
            G + EA+ L    E+ + +VV WTT++S Y  SN   +A      +  E V  N+ +++
Sbjct: 64  FGLLDEARNLFD--EMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYS 121

Query: 297 LMI---SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
            ++    G+LN      + S   +G L   ++V   +      +     A ++F+E+   
Sbjct: 122 SVLRACDGLLN--LRQLHGSILKVG-LESDVFVRSALIDTYSKLGEQHDALNVFNEMITG 178

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           ++ +W S+I  +A      + + L+  M+      DQ T  ++L AC+   L++     L
Sbjct: 179 DLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLE-----L 233

Query: 414 SKKSRVYNIK--PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++  V+ +K    +     ++D+  + G LE++    T M    DV  WS+++
Sbjct: 234 GRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMI 287


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 191/560 (34%), Positives = 296/560 (52%), Gaps = 59/560 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L     L  +  +   I + + I  ++S G     L LLS M A+G+ P   T+ + +
Sbjct: 337 GRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASL 396

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A    R L  G+ LH +  +  +     +   L+ MY + G    A+ L      D   
Sbjct: 397 PA---CRGLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDP-H 452

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLN 304
           VV  T +++ Y      D+AR LFD +  ++ + W  MI G                ML 
Sbjct: 453 VVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLG 512

Query: 305 QDAE-------FKYKSCASIGALYHGIWVHVYIKKN---QISI-------------DNIE 341
              E           + A +G +  G W+H Y+K +   Q+S+              ++ 
Sbjct: 513 SGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLG 572

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A D+F  I +K++ +W ++I  YAM G ++KA+++F++  E G  P  +TFI LL+ACS
Sbjct: 573 DAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACS 632

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H G+V+EG +F     R Y I PK++HYGCMVDLLGRAG ++E+   + SM I PD  +W
Sbjct: 633 HSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMW 692

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            SLL ACR H+N+ L +    +L      N G ++LL+NIYA  G   +++R+R  ++  
Sbjct: 693 VSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKAS 752

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-----------L 570
           G++K+ G S IE    V++F +GD+ +P ++EIY+ML+++   +++ G           L
Sbjct: 753 GIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDL 812

Query: 571 QETSLQ-----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
            E + +     H E+LA+AFGLIST    TI+IV NLR C DCH+ +K+ S++  R+IV 
Sbjct: 813 DEATKEKALAVHSEKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVF 872

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F  G CSC DYW
Sbjct: 873 RDRNRFHHFVDGSCSCGDYW 892



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 4/156 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L +   +F  + ++D++ WN MI+ Y   G  R+ L +  +   +G+ P ++T + 
Sbjct: 567 KCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIG 626

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           L++A +    +E G+     +E     I   + +Y  +VD+  + G I EA  L+   +I
Sbjct: 627 LLNACSHSGMVEEGREFFQSMERE-YGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKI 685

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
              D V+W +L++           +++ D +V + L
Sbjct: 686 TP-DAVMWVSLLAACRLHKNMSLGQQIADYLVAKGL 720


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 203/694 (29%), Positives = 343/694 (49%), Gaps = 91/694 (13%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           +   V P  + +++    C+ I +   IHS +  + L +   +ST +       G L  A
Sbjct: 220 QLEGVRPARITLVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQA 279

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV------TRTVLLN-------- 138
           +++  +  E ++  WN+++     +G+  E   ++  ++      ++  L+N        
Sbjct: 280 KEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSL 339

Query: 139 ------------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
                                         +CG  +E   LF+ +P  + +SWNTMI+  
Sbjct: 340 RFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGS 398

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISART----KLRDLEMGKNLHLFLEESTM 224
           +  G  +  L L  +M  EG++P   T ++L+ A      + R +  G+ LH  +     
Sbjct: 399 SQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGY 458

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRL 283
               ++   +V MY  CG I EA     R  + D  DVV W  ++S   +      A   
Sbjct: 459 ASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGF 518

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----- 338
           F  M    +    +    +L+        +CA   AL  G+ VH +++ + +  +     
Sbjct: 519 FRRMDLHGVAPNQITCVAVLD--------ACAGAAALTEGVIVHDHLRHSGMESNVFVAT 570

Query: 339 ----------NIELAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
                     ++E A ++F +++ E++V ++ ++IAAY+  G A +A+ LF  M++ G++
Sbjct: 571 ALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSR 630

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD+ +F+++LSACSHGGL DEG++      + Y I P   HY C VD+LGRAG L ++  
Sbjct: 631 PDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEE 690

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
            I  M + P V +W +LL ACR +++V     A   + E DP ++ A+V+L+NI A AG+
Sbjct: 691 LIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGK 750

Query: 508 LDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567
            D+ + +R ++   GL+KQ G S IE    VH+F +GD  +P SEEIY  L  +   +++
Sbjct: 751 WDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIRE 810

Query: 568 QG-LQETSL---------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
            G + +T L               QH ERLA+A G++S+S   T+R++ NLR+C DCH+ 
Sbjct: 811 IGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSS-TDTVRVMKNLRVCEDCHNA 869

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            K  S++ N+EIV+RD  RFH F  G CSC DYW
Sbjct: 870 TKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 158/358 (44%), Gaps = 29/358 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  L +V ++F +L  RD  SW T+I+ YT  G  +  + +  +M  EGV  D VT ++
Sbjct: 74  KCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLA 133

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +L DL  G+++H ++ ES ++    L N L+ +Y  CG +  A  L  R    E
Sbjct: 134 VLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM---E 190

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSC 314
            D+V W   ++   +S + D A  LF  M    V    I+  + +S            S 
Sbjct: 191 RDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSI 250

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
                L   + V   +      + +++ A ++F   +E++V  W +++ AYA  GH  +A
Sbjct: 251 VRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEA 310

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACS--------HGGLVDEGYDFLSKKSRVYNIKPKM 426
             LF  M   G  P +VT +   + CS        H   +++G D    +  V       
Sbjct: 311 ALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLD----RDIVLG----- 361

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
                ++D+  R G  EE+ +      IP +   W++++        +K A   F+ +
Sbjct: 362 ---NALLDMYTRCGSPEEARHLFEG--IPGNAVSWNTMIAGSSQKGQMKRALELFQRM 414



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 132/304 (43%), Gaps = 33/304 (10%)

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V L+ A    R L  G+ +H  +   ++ +   L N+L+ +Y KC  +G+ +++  R E
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARI--VSLGLEEELGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D   WTT+++ Y +  +   A  +F  M +  +    +    +L        K+CA
Sbjct: 90  VR--DEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVL--------KACA 139

Query: 316 SIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTS 360
            +G L  G  +H +I ++ +               S   +  A  LF  + E+++  W +
Sbjct: 140 RLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNA 198

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
            IAA A +G    A++LF  M+  G +P ++T +  LS C+        +  +    R  
Sbjct: 199 AIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIV----RES 254

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            ++  +     +     R GHL++ A  +       DV  W+++L A   H ++  A   
Sbjct: 255 GLEQTLVVSTALASAYARLGHLDQ-AKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 481 FKHL 484
           F  +
Sbjct: 314 FARM 317


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 199/577 (34%), Positives = 310/577 (53%), Gaps = 73/577 (12%)

Query: 128 LYLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL---SK 183
           ++L TR ++L  KC  L +   +FD++P R+V+SW  MIS Y+  G   + L L     K
Sbjct: 278 VFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVK 337

Query: 184 MGAEGV------------------SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           +   GV                   P+E T  +++++ T      +G+ +H  + +   +
Sbjct: 338 ISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYE 397

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA----R 281
               + + L+DMY K GKI EA+ +     + E DVV  T ++SGY +    +EA    R
Sbjct: 398 DHVFVGSSLLDMYAKDGKIHEARTVFEC--LPERDVVSCTAIISGYAQLGLDEEALELFR 455

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS----- 336
           RL  E ++ N +++T +++ +            + + AL  G  VH ++ +++I      
Sbjct: 456 RLQGEGMKSNYVTYTGVLTAL------------SGLAALDLGKQVHNHVLRSEIPSFVVL 503

Query: 337 ----ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETG 385
               ID      N+  +  +F  + E+ V  W +++  Y+  G  ++ + LF  M EET 
Sbjct: 504 QNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETK 563

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYD-FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
            KPD VT +A+LS CSHGGL D+G + F    S    ++PKM+HYGC+VDLLGR+G +EE
Sbjct: 564 VKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEE 623

Query: 445 SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504
           +  FI  MP  P  +IW SLL ACR H NV + E A + L E +P N G +V+L+N+YA 
Sbjct: 624 AFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYAS 683

Query: 505 AGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMT 564
           AGR +D+S +R  +    + K+ G S IE    +H F + D  +P  EEI + + E+  +
Sbjct: 684 AGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTS 743

Query: 565 LQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDC 608
            ++ G                 ++  L H E+LA++FGLI++     IR++ NLRIC DC
Sbjct: 744 FKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDC 803

Query: 609 HSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           H+F K  S+VY RE+ +RD  RFHR  GG+CSC DYW
Sbjct: 804 HNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 131/291 (45%), Gaps = 40/291 (13%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           R    G+ +H  + ++    S  L   L+ +Y KC  +G+A  +    E+ E +VV WT 
Sbjct: 257 RAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFD--EMPERNVVSWTA 314

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISW----TLMISG-----MLNQDAEFKYK----S 313
           ++S Y +     +A  LF   V+ +L        L +S      +  +  EF +     S
Sbjct: 315 MISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTS 374

Query: 314 CAS-----IGALYHGIWV------HVYIKKNQISI----DNIELAYDLFSEISEKNVYLW 358
           C S     +G   H + +      HV++  + + +      I  A  +F  + E++V   
Sbjct: 375 CTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSC 434

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T++I+ YA  G  ++A++LF  ++  G K + VT+  +L+A S    +D     L K+  
Sbjct: 435 TAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALD-----LGKQVH 489

Query: 419 VYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            + ++ ++  +      ++D+  + G+L  S     +M     +S W+++L
Sbjct: 490 NHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVIS-WNAML 539


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 294/534 (55%), Gaps = 41/534 (7%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
            + V ++FD++  RDV+SWNT++      G + E LG + KM  EG  PD  T+ +++  
Sbjct: 120 FESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPI 179

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
             +  D++ G  +H F   +       + + L+DMY  C +   + K+     +   D +
Sbjct: 180 FAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR--DHI 237

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           LW +L++G  ++   +EA  +F  M++  +    +  S ++          C ++ +L  
Sbjct: 238 LWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLI--------PVCGNLASLRF 289

Query: 323 GIWVHVYIK----KNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H Y+     ++ + I +           I +A+ +F ++S  +V  WT++I  YA+
Sbjct: 290 GKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYAL 349

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G A++A+ LF  ME    KP+ +TF+A+L+ACSH GLVD+G+ +    S  Y I P ++
Sbjct: 350 HGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLE 409

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           H+  + D LGRAG L+E+ NFI+ M I P  S+WS+LLRACR H+N  LAE   K + E 
Sbjct: 410 HFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMEL 469

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P + G+HV+L+N+Y+ +GR ++ + +R  +R  G+KK    S IE    +H F + D  
Sbjct: 470 EPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRS 529

Query: 548 NPHSEEIYLMLNEIEMTLQQQG--------LQETSLQHR--------ERLAVAFGLISTS 591
           +P  + I   LN     + ++G         Q+   +H+        E+LA+ FG+IST 
Sbjct: 530 HPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTP 589

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             T IR++ NLR+C DCH+  K  S++ +REIV+RD  RFH F+ G CSC D+W
Sbjct: 590 AGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 22/215 (10%)

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIE----------------NQLINGYPQEVFAIYLYLVT 132
           LG+ +++ R+G  P+    ++++                     NG+  +VF +   L+ 
Sbjct: 155 LGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVF-VGSSLID 213

Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
              +   C +     ++FD LP RD I WN++++     G   E LG+  +M   GV P 
Sbjct: 214 ---MYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPV 270

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
            VT  SLI     L  L  GK LH ++     + +  + + L+DMY KCG+I  A  +  
Sbjct: 271 PVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFD 330

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           +  +   DVV WT ++ GY       EA  LF+ M
Sbjct: 331 K--MSSPDVVSWTAMIMGYALHGPAREALVLFERM 363



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG++     +FDK+ + DV+SW  MI  Y   G  RE L L  +M      P+ +T ++
Sbjct: 318 KCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLA 377

Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +++A +    ++ G K          +  +      L D   + G++ EA   + + +I 
Sbjct: 378 VLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIK 437

Query: 258 EVDVVLWTTLV 268
               V W+TL+
Sbjct: 438 PTASV-WSTLL 447


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 188/541 (34%), Positives = 288/541 (53%), Gaps = 41/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG + E  ++FD L N D+ISW  MI  Y   G  +E   L+ +M  EG  P+ +T
Sbjct: 173 MYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAIT 232

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            VS+++A      L+  K +H    ++ +++   +   LV MY K G I +A+ +  R +
Sbjct: 233 YVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK 292

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   DVV W  ++  + +     EA  LF +M         +M   +LN        +CA
Sbjct: 293 VR--DVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILN--------ACA 342

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           S GAL     +H +   + + +D               +I+ A  +F  +  +NV  W +
Sbjct: 343 SAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNA 402

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+  A  G  Q A+++F  M   G KPD+VTF+A+LSACSH GLVDEG       ++VY
Sbjct: 403 MISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVY 462

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I+P + H  CMVDLLGRAG L E+  FI +M + PD + W +LL +CR + NV+L E  
Sbjct: 463 GIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELV 522

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K   + DP N   +VLL+NIYA+AG+ D +S +R  +R+ G++K+ G S IE    +H 
Sbjct: 523 AKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHD 582

Query: 541 FTSGDIFNPHSEEIYLMLNEI-------------EMTLQQQGLQETSL---QHRERLAVA 584
           F   D  +P  +EI    +++              + L+ + +++  L    H E+LA+ 
Sbjct: 583 FLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIV 642

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           +GL+ T     IR+  NLR+C DCH   K+ S+V  REI++RD  RFH F+ G CSC DY
Sbjct: 643 YGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDY 702

Query: 645 W 645
           W
Sbjct: 703 W 703



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 169/362 (46%), Gaps = 27/362 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG+L+E   +FD L  +   SWN MI+ Y       + + L  +M  EGV P+  T + 
Sbjct: 75  ECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMI 134

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A   L  L+ GK +H  +    ++    +   L+ MY KCG I EA+++     +  
Sbjct: 135 ILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFD--NLMN 192

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D++ WT ++  Y +S    EA RL  +M +       +    +LN        +CAS G
Sbjct: 193 HDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILN--------ACASEG 244

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           AL     VH +     + +D               +I+ A  +F  +  ++V  W  +I 
Sbjct: 245 ALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIG 304

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           A+A  G   +A DLFL+M+  G KPD + F+++L+AC+  G + E    + + +    ++
Sbjct: 305 AFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGAL-EWVKKIHRHALDSGLE 363

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
             ++    +V +  ++G ++++      M +   VS W++++     H   + A   F+ 
Sbjct: 364 VDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVS-WNAMISGLAQHGLGQDALEVFRR 422

Query: 484 LT 485
           +T
Sbjct: 423 MT 424



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 175/392 (44%), Gaps = 75/392 (19%)

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G+  D    V ++    K +DL   K +H  + +S M+ +  ++N L+ +Y +CG++ EA
Sbjct: 23  GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEA 82

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGML 303
           + +     + +     W  +++GYV+    ++A RLF EM    V+ N  ++ +++    
Sbjct: 83  RCVFD--ALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIIL---- 136

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                   K+CAS+ AL  G  VH  I+   +  D               +I  A  +F 
Sbjct: 137 --------KACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFD 188

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS------- 401
            +   ++  WT +I AYA +G+ ++A  L L+ME+ G KP+ +T++++L+AC+       
Sbjct: 189 NLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKW 248

Query: 402 ----HGGLVDEGYDFLSK----------------KSRVYNIKPKMQ---HYGCMVDLLGR 438
               H   +D G +   +                 +RV   + K++    +  M+     
Sbjct: 249 VKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAE 308

Query: 439 AGHLEESANFITSMPI---PPDVSIWSSLLRACRCHQNV----KLAEHAFKHLTETDPLN 491
            G   E+ +    M      PD  ++ S+L AC     +    K+  HA     E D   
Sbjct: 309 HGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRV 368

Query: 492 DGAHVLLANIYAKAGRLDDMSRI--RMKLRDM 521
             A   L ++Y+K+G +DD   +  RMK+R++
Sbjct: 369 GTA---LVHMYSKSGSIDDARVVFDRMKVRNV 397


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 198/603 (32%), Positives = 314/603 (52%), Gaps = 77/603 (12%)

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLL---------NKCGKLKEVCQLFDKLPNRDV 158
           N +I N + +G       ++  +  +T +          N+ GK+K   QLFD++P  D+
Sbjct: 9   NRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDI 68

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
            S+N M++CY              +M  +    D  +  ++IS  ++   ++  + L L 
Sbjct: 69  FSYNIMLACYLHNADVESARLFFDQMPVK----DTASWNTMISGFSQNGMMDQARELFL- 123

Query: 219 LEESTMKISGSL-LNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNE 276
                M +  S+  N ++  Y + G +  A++L   +E+  V  VV WT +++G++K  +
Sbjct: 124 ----VMPVRNSVSWNAMISGYVESGDLDLAKQL---FEVAPVRSVVAWTAMITGFMKFGK 176

Query: 277 RDEARRLFDEMVERNLISWTLMISGML-NQDAEFKYK----------------------S 313
            + A + F+EM  +NL++W  MI+G + N  AE   K                       
Sbjct: 177 IELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLG 236

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           C+++ AL  G  VH  I K+ +S +               ++E A+ LF  + +K+V  W
Sbjct: 237 CSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTW 296

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            ++I+ YA  G  +KA+ LF +M + G KPD +TF+A+LSAC+H G VD G ++ +   R
Sbjct: 297 NAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVR 356

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            Y ++ K  HY C+VDLLGR G L E+ + I  MP  P  +I+ +LL ACR H+N++LAE
Sbjct: 357 DYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAE 416

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A K+L   DP +   +V LAN+YA   R D ++ +R  ++D  + K  GYS IE    V
Sbjct: 417 FAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVV 476

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLA 582
           H+F SGD  +P    I+  LNE+E  ++  G                 ++  L+H E+LA
Sbjct: 477 HEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLA 536

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           +A+GLI     T IR+  NLR+CGDCHS  K  S +  R I++RD  RFH F+ G+CSC 
Sbjct: 537 IAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCG 596

Query: 643 DYW 645
           DYW
Sbjct: 597 DYW 599



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/239 (19%), Positives = 110/239 (46%), Gaps = 32/239 (13%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-----YKSC 314
           +V+    +++ +++S + + A R+F+ M  +  ++W  M++G  N+  + K     +   
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
                  + I +  Y+        ++E A   F ++  K+   W ++I+ ++  G   +A
Sbjct: 64  PEPDIFSYNIMLACYLHNA-----DVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQA 118

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP--KMQHYGCM 432
            +LFL M       + V++ A++S     G V+ G   L+K+  ++ + P   +  +  M
Sbjct: 119 RELFLVMPVR----NSVSWNAMIS-----GYVESGDLDLAKQ--LFEVAPVRSVVAWTAM 167

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA----CRCHQNVKLAEHAFKHLTET 487
           +    + G +E +  +   MP+  ++  W++++      C+    +KL    FK + E+
Sbjct: 168 ITGFMKFGKIELAEKYFEEMPM-KNLVTWNAMIAGYIENCQAENGLKL----FKRMVES 221


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 189/571 (33%), Positives = 314/571 (54%), Gaps = 54/571 (9%)

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTM 164
           N I  +   NG+   +F +        VL+N   K   L +  QLFD++P R+VISW TM
Sbjct: 81  NLICRHLYFNGHRPMMFLV-------NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTM 133

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           IS Y+   ++++ L LL  M  + V P+  T  S++ +   + D+ M   LH  + +  +
Sbjct: 134 ISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGL 190

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRY-EIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           +    + + L+D++    K+GE +  L  + E+   D ++W +++ G+ +++  D A  L
Sbjct: 191 ESDVFVRSALIDVF---AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALEL 247

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK-------NQIS 336
           F  M     I+    ++ +L        ++C  +  L  G+  HV+I K       N   
Sbjct: 248 FKRMKRAGFIAEQATLTSVL--------RACTGLALLELGMQAHVHIVKYDQDLILNNAL 299

Query: 337 ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           +D      ++E A  +F+++ E++V  W+++I+  A  G++Q+A+ LF  M+ +GTKP+ 
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           +T + +L ACSH GL+++G+ +     ++Y I P  +HYGCM+DLLG+AG L+++   + 
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            M   PD   W +LL ACR  +N+ LAE+A K +   DP + G + LL+NIYA + + D 
Sbjct: 420 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDS 479

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE---------- 560
           +  IR ++RD G+KK+ G S IE    +H F  GD  +P   E+   LN+          
Sbjct: 480 VEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGY 539

Query: 561 ------IEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                 +   L+ + ++++   H E+LA+AFGL++   +  IRI  NLRICGDCH F K+
Sbjct: 540 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S++  R IVIR   R+H FQ G+CSC DYW
Sbjct: 600 ASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 53/306 (17%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           II++G E ++ + +++I          +VFA             K G+ ++   +FD++ 
Sbjct: 185 IIKEGLESDVFVRSALI----------DVFA-------------KLGEPEDALSVFDEMV 221

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
             D I WN++I  +         L L  +M   G   ++ T+ S++ A T L  LE+G  
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
            H+ + +    +   L N LVDMY KCG + +A ++    ++ E DV+ W+T++SG  ++
Sbjct: 282 AHVHIVKYDQDL--ILNNALVDMYCKCGSLEDALRVFN--QMKERDVITWSTMISGLAQN 337

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
               EA +LF+ M         + I G+L         +C+  G L  G W +    K  
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLF--------ACSHAGLLEDG-WYYFRSMKKL 388

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
             ID +   Y    ++  K              AG    A+ L  EME    +PD VT+ 
Sbjct: 389 YGIDPVREHYGCMIDLLGK--------------AGKLDDAVKLLNEME---CEPDAVTWR 431

Query: 395 ALLSAC 400
            LL AC
Sbjct: 432 TLLGAC 437


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 192/525 (36%), Positives = 286/525 (54%), Gaps = 43/525 (8%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           LP+ D  S NT++    S    R  L L  +  A    PD  T   L+ A T+L  L  G
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALALHRRRLA---PPDTHTYPPLLQACTRLLALREG 139

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           ++LH    ++ +     + N LV  Y  CG    A ++     + E ++V W ++++G+ 
Sbjct: 140 ESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFA 199

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
            +   +E   +F E +E +L+     I  +L         +CA IGAL  G  VHV+  K
Sbjct: 200 ANGRPNEVLTIFRETLEADLMPDGFTIVSVLT--------ACAEIGALTLGRRVHVFASK 251

Query: 333 ---------NQISID------NIELAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAID 376
                        ID       +E A+ +F E+   + V  WTS+I   A  G  + A++
Sbjct: 252 VGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALE 311

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF  ME     P  +T + +L ACSH GLVD+G+ + ++    Y I P ++H GCMVDLL
Sbjct: 312 LFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLL 371

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG +EE+ N+IT+MP+ P+  +W +LL AC  H+ ++L E A+  L E DP + G +V
Sbjct: 372 GRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYV 431

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+N+YA  GR  D   +R  +   G++K  G+SL+E    V++F  GD  +P S++IY 
Sbjct: 432 LLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQ 491

Query: 557 MLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVN 600
            L EI   L+ QG                +ET+L  H ERLA+AF L+ +   + IRIV 
Sbjct: 492 TLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVK 551

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+CGDCH  +K+ S+VY+REI++RD  RFH F+GG+CSC+DYW
Sbjct: 552 NLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 200/616 (32%), Positives = 320/616 (51%), Gaps = 72/616 (11%)

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY-----LYLVTRTVLLN---KCGKL 143
           A+++     E     WN ++   + NG  +E   ++       L++   L+    +  KL
Sbjct: 161 AREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKL 220

Query: 144 KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
            +   LFDK+P RD ISWNTMIS Y   G    GL    ++  E  + D  T  +++S  
Sbjct: 221 GDARWLFDKMPVRDAISWNTMISGYAQGG----GLSQARRLFDESPTRDVFTWTAMVSGY 276

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
            +   L+  K    F +E   K   S  N ++  Y +  K+  A++L        +    
Sbjct: 277 VQNGMLDEAKT---FFDEMPEKNEVSY-NAMIAGYVQTKKMDIARELFESMPCRNISS-- 330

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------------LNQDAE 308
           W T+++GY +  +  +AR+ FD M +R+ +SW  +I+G                + QD E
Sbjct: 331 WNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGE 390

Query: 309 --------FKYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYD 345
                       +CA I AL  G  +H            ++    +++     +I+ A D
Sbjct: 391 SLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
            F  I EK+V  W +++A YA  G  ++A+ +F  M+  G KPD++T + +LSACSH GL
Sbjct: 451 TFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGL 510

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           +D G ++    ++ Y + P  +HY CM+DLLGRAG LEE+ + I +MP  P  + W +LL
Sbjct: 511 LDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALL 570

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            A R H N +L E A + + + +P N G +VLL+N+YA +GR  D  ++R K+RD+G++K
Sbjct: 571 GASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQK 630

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
             GYS +E    +H F+ GD  +P  E IY  L E+++ ++++G                
Sbjct: 631 VPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEE 690

Query: 571 QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           +E  L+ H E+LAVAFG+++      IR++ NLR+C DCHS +K  S++  R I++RD+ 
Sbjct: 691 KEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSH 750

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F  G CSC DYW
Sbjct: 751 RFHHFNEGFCSCGDYW 766



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 58/329 (17%)

Query: 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           ++ + V  T  +  C +L +  +LFD +P +DV+SWN+++S Y   G   E   +   M 
Sbjct: 111 LFSWNVMLTGYVRNC-RLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            +    + ++   L++A      +E        L ES         N L+  + +  K+G
Sbjct: 170 EK----NSISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRKKKLG 221

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS----- 300
           +A+ L  +  +   D + W T++SGY +     +ARRLFDE   R++ +WT M+S     
Sbjct: 222 DARWLFDKMPVR--DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279

Query: 301 GMLNQDAEF----KYKSCASIGALYHGIWVHVYIKKNQIS-------------------- 336
           GML++   F      K+  S  A+  G   +V  KK  I+                    
Sbjct: 280 GMLDEAKTFFDEMPEKNEVSYNAMIAG---YVQTKKMDIARELFESMPCRNISSWNTMIT 336

Query: 337 ----IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
               I +I  A   F  + +++   W ++IA YA +GH ++A+++F+E+++ G   ++ T
Sbjct: 337 GYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRAT 396

Query: 393 FIALLSACS-----------HGGLVDEGY 410
           F   LS C+           HG  V  GY
Sbjct: 397 FGCALSTCADIAALELGKQIHGQAVKMGY 425



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 111/244 (45%), Gaps = 43/244 (17%)

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GL+D G ++    +  Y++ P  +HY CM+DLLGR   LEE A                 
Sbjct: 778 GLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEGA----------------- 820

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL A R H N +L E A +   +  P N G                       K+RD+G+
Sbjct: 821 LLGASRIHGNTELGEKAAQMFFKMGPQNSGIS---------------------KMRDVGV 859

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEI-YLMLNEIEMTLQQQGLQETSLQHRERLA 582
           +K  GYS  E    +H F+ G   +   E I +L   +++M  +++  + T     E LA
Sbjct: 860 QKVPGYSWFEVQNKIHTFSVGLFLSRERENIGFLEELDLKMREREEEKERTLKYLSENLA 919

Query: 583 VAFGLISTSEKTTIRIVNN-LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
            A G+++       R++   + +C DC S +K  S++  R I +RD+   HRF    CSC
Sbjct: 920 AALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRDS---HRFNESICSC 976

Query: 642 RDYW 645
            +YW
Sbjct: 977 GEYW 980



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 174/375 (46%), Gaps = 32/375 (8%)

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           ++ + D++ WN  IS +   G     L + + M         V+  ++IS   +     +
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR----SSVSYNAMISGYLRNSKFNL 98

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
            +NL   + E  +       N ++  Y +  ++G+A++L     + E DVV W +L+SGY
Sbjct: 99  ARNLFDQMPERDL----FSWNVMLTGYVRNCRLGDARRLFDL--MPEKDVVSWNSLLSGY 152

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKSCASIGALYHGIWVH 327
            ++   DEAR +FD M E+N ISW  +++  ++    ++A   ++S +    +     + 
Sbjct: 153 AQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMG 212

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
            +++K ++       A  LF ++  ++   W ++I+ YA  G   +A  LF   +E+ T+
Sbjct: 213 GFVRKKKLGD-----ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF---DESPTR 264

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
            D  T+ A++S     G++DE   F  +      +      Y  M+    +   ++ +  
Sbjct: 265 -DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARE 318

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
              SMP   ++S W++++       ++  A   F  + + D ++  A  ++A  YA++G 
Sbjct: 319 LFESMPC-RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA--IIAG-YAQSGH 374

Query: 508 LDDMSRIRMKLRDMG 522
            ++   + ++++  G
Sbjct: 375 YEEALNMFVEIKQDG 389


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 199/655 (30%), Positives = 333/655 (50%), Gaps = 79/655 (12%)

Query: 39  PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P ++ ++ V  +C+S+  + R   +H + + + L  D  +   V +     G +  A ++
Sbjct: 229 PDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKV 288

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
             +    ++  WN+     ++ GY Q                   G+  +   LF+K+  
Sbjct: 289 FERMKVKDVVSWNA-----MVTGYSQ------------------IGRFDDALGLFEKIRE 325

Query: 156 R----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
                +V++W+ +I+ Y   G+  E L +  +M   G  P+ VT+VSL+S       L  
Sbjct: 326 EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLH 385

Query: 212 GKNLH-------LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           GK  H       L L+E+       ++N L+DMY KC     A+ +       +  VV W
Sbjct: 386 GKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTW 445

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERN--LISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           T L+ G  +  E +EA  LF +M++ +  ++     IS  L         +CA +GAL  
Sbjct: 446 TVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCAL--------MACARLGALRF 497

Query: 323 GIWVHVYIKKNQIS----------ID------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
           G  +H Y+ +N+            ID      +++ A  +F  + ++N   WTS++  Y 
Sbjct: 498 GRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYG 557

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
           M G  ++A+ +F EM++ G  PD VTF+ +L ACSH G+VD+G ++ +  ++ + + P  
Sbjct: 558 MHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGA 617

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HY CMVDLL RAG L+E+   I  MP+ P  ++W +LL ACR + NV+L E+A   L E
Sbjct: 618 EHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLE 677

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            +  NDG++ LL+NIYA A    D++RIR  +++ G+KK+ G S ++       F +GD 
Sbjct: 678 LESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDW 737

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERLAVAFGLIST 590
            +P S++IY +L ++   ++  G    +                 +H E+LA+A+G+++T
Sbjct: 738 SHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTT 797

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +    IRI  NLR CGDCHS     S +   EI++RD+ RFH F+ G CSCR YW
Sbjct: 798 APGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 199/457 (43%), Gaps = 74/457 (16%)

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR-- 156
           G+ P  +   S+      +G+   VF +   LV+   +  +CG  +   Q+FD++  R  
Sbjct: 137 GEIPSFRCGASVHAVVFASGFEWNVF-VGNGLVS---MYGRCGAWENARQVFDEMRERGV 192

Query: 157 -DVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKN 214
            D++SWN++++ Y   G     + +  +M  + G+ PD V++V+++ A   +     GK 
Sbjct: 193 GDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ 252

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +H +   S +     + N +VDMY KCG + EA K+  R ++   DVV W  +V+GY + 
Sbjct: 253 VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK--DVVSWNAMVTGYSQI 310

Query: 275 NERDEARRLF----DEMVERNLISWTLMISGMLNQDAEFK-------------------- 310
              D+A  LF    +E +E N+++W+ +I+G   +   F+                    
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370

Query: 311 ---YKSCASIGALYHGIWVHVYIKKNQISIDN---------IELAYDLFSEI-------- 350
                 CA  G L HG   H +  K  +++D          I    D++S+         
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 430

Query: 351 -------SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSACS 401
                   +++V  WT +I   A  G A +A++LF +M   +    P+  T    L AC+
Sbjct: 431 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACA 490

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQH-----YGCMVDLLGRAGHLEESANFITSMPIPP 456
             G +  G     ++   Y ++ + +        C++D+  ++G ++ +     +M    
Sbjct: 491 RLGALRFG-----RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 545

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
            VS W+SL+     H   + A   F  + +   + DG
Sbjct: 546 GVS-WTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDG 581



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 143/351 (40%), Gaps = 63/351 (17%)

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           I +  L+ G P +      ++++  +  N   K   V +      +  V  WN +I    
Sbjct: 48  IHQQLLVQGLPHDP----THIISMYLTFNSPAKALSVLRRLHP-SSHTVFWWNQLIRRSV 102

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
            +G   + L L  +M   G  PD  T   ++ A  ++     G ++H  +  S  + +  
Sbjct: 103 HLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVF 162

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           + N LV MY +CG    A+++        V D+V W ++V+ Y++  +   A ++F+ M 
Sbjct: 163 VGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMT 222

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI------------- 335
           E   I    +   ++N        +CAS+GA   G  VH Y  ++ +             
Sbjct: 223 EDLGIRPDAV--SLVN-----VLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDM 275

Query: 336 ---------------------------------SIDNIELAYDLFSEISEK----NVYLW 358
                                             I   + A  LF +I E+    NV  W
Sbjct: 276 YAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTW 335

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           ++VIA YA  G   +A+D+F +M   G++P+ VT ++LLS C+  G +  G
Sbjct: 336 SAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHG 386


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 189/569 (33%), Positives = 319/569 (56%), Gaps = 46/569 (8%)

Query: 111 IENQLI-NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           I  QLI NG+ Q+ F ++  L +     +KC  +    ++F    N +V  +  +I  + 
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRS----CSKCHAIDYASRIFQYTHNPNVYLYTALIDGFV 106

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
           S G Y + + L S+M  + + PD   M S++ A      L  G+ +H    +  +  +  
Sbjct: 107 SSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRL 166

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEV--DVVLWTTLVSGYVKSNERDEARRLFDEM 287
           +   ++++Y KCG++G+A+++      D V  D V WT ++ G+V++ E + A   F  M
Sbjct: 167 VRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGM 226

Query: 288 VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--------- 338
              N+      I  +L+        +C+ +GAL  G WVH Y++K +I ++         
Sbjct: 227 QGENVRPNEFTIVCVLS--------ACSQLGALEIGRWVHSYMRKFEIELNLFVGNALIN 278

Query: 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                 +I+ A  +F E+ +++V  + ++I+  +M G +++AI+LF  M     +P  VT
Sbjct: 279 MYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVT 338

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           F+ +L+ACSHGGLVD G+      +R Y ++P+++HYGCMVDLLGR G LEE+ + I +M
Sbjct: 339 FVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM 398

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
            + PD  +  +LL AC+ H+N++L E   K L +    + G +VLL+++YA +G+  + +
Sbjct: 399 KMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAA 458

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN------------- 559
           ++R K+++ G++K+ G S IE    +H+F  GD+ +P  E IY  L              
Sbjct: 459 QVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHP 518

Query: 560 EIEMTLQ--QQGLQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
           E E+ LQ  + G +E +L  H ERLA+ +GLIST   T IR++ NLR+C DCHS +K+ +
Sbjct: 519 EKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIA 578

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++  R++V+RD  RFH F+ G CSC DYW
Sbjct: 579 KITRRKVVVRDRNRFHYFENGACSCGDYW 607


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 197/619 (31%), Positives = 319/619 (51%), Gaps = 65/619 (10%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           +R+H+H   +N +    IS ++       G L  AQ +  +  + ++  WN+     +I+
Sbjct: 83  KRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNT-----MIS 137

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
           GY                     G++++  +LFD++P+RD  SWN +IS Y S G Y E 
Sbjct: 138 GYAN------------------VGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEA 179

Query: 178 LGLLSKMGA-EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
           L L   M   E  + +  T+ S ++A   +  L  GK +H +L  S +++   +   L+D
Sbjct: 180 LDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLD 239

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           +Y KCG + EA+ +    ++ + D+V WTT++    +   + E   LF +++   +    
Sbjct: 240 LYGKCGSLNEARGIFD--QMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNE 297

Query: 297 LMISGMLNQDAEFKYKSCASIGALYHG---------------IWVHVYIKKNQISIDNIE 341
              +G+LN  A+    +   +G   HG                 VHVY K       N E
Sbjct: 298 YTFAGVLNACADL---AAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSK-----CGNTE 349

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  +F+++   ++  WTS+I  YA  G    A+  F  +  +GTKPD++TF+ +LSAC+
Sbjct: 350 TARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACT 409

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GLVD G ++       + +     HY C++DLL R+G  +E+ N I +MP+ PD  +W
Sbjct: 410 HAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLW 469

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
           +SLL  CR H N++LAE A K L E +P N   ++ L+NIYA AG   + +++R  + + 
Sbjct: 470 ASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNR 529

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------- 570
           G+ K+ G S IE    VH F  GD  +P   +I+  L E+   ++++G            
Sbjct: 530 GIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDV 589

Query: 571 -----QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
                ++    H E+LAVAFG+ISTS  T I++  NLR C DCH+ MK  S++  R+I++
Sbjct: 590 EEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIV 649

Query: 626 RDNGRFHRFQGGQCSCRDY 644
           RD+ RFH F  G CSC+DY
Sbjct: 650 RDSNRFHCFVDGSCSCKDY 668



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 146/325 (44%), Gaps = 65/325 (20%)

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           P      +LI+A  + R LE+GK +H   + S       + N L+ MY KCG + +AQ L
Sbjct: 61  PSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQML 120

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD---- 306
               EI + D+  W T++SGY      ++AR+LFDEM  R+  SW  +ISG ++Q     
Sbjct: 121 FD--EIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYME 178

Query: 307 --------AEFKYKSC------------ASIGALYHGIWVHVYIKKNQISIDNI------ 340
                    E +  +C            A+I +L  G  +H Y+ ++ + +D +      
Sbjct: 179 ALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALL 238

Query: 341 ---------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                      A  +F ++++K++  WT++I      G  ++   LF ++  +G +P++ 
Sbjct: 239 DLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEY 298

Query: 392 TFIALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           TF  +L+AC+           HG +   GYD  S  +              +V +  + G
Sbjct: 299 TFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAA------------SALVHVYSKCG 346

Query: 441 HLEESANFITSMPIPPDVSIWSSLL 465
           + E +      MP  PD+  W+SL+
Sbjct: 347 NTETARRVFNQMP-RPDLVSWTSLI 370


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 211/695 (30%), Positives = 335/695 (48%), Gaps = 98/695 (14%)

Query: 13  TIFEPKLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRD 72
           + F   L R GL+P  R+       C             S++    ++H     +    D
Sbjct: 100 STFSQMLTR-GLMPDNRVLPSAVKACA----------GLSALKPARQVHGIASVSGFDSD 148

Query: 73  PQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVT 132
             + + +    +    +  A ++  +  EP++  W++     L+  Y ++          
Sbjct: 149 SFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSA-----LVAAYARQ---------- 193

Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDV----ISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
                   G + E  +LF ++ +  V    ISWN MI+ +   G+Y E + +   M   G
Sbjct: 194 --------GCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG 245

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
             PD  T+ S++ A   L DL MG  +H ++ +  +     + + L+DMY KC    E  
Sbjct: 246 FEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMS 305

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF----DEMVERNLISWTLMISGMLN 304
           ++    ++D +DV      + G  ++ + + + RLF    D+ +E N++SWT MI+    
Sbjct: 306 QVFD--QMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQ 363

Query: 305 --------------QDAEFKYKS---------CASIGALYHGIWVHVYIKKNQISID--- 338
                         Q A  K  S         C +I AL HG   H +  +  IS D   
Sbjct: 364 NGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYV 423

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        I+ +   F  I  KN+  W +VIA YAM G A++A+++F  M+ +G 
Sbjct: 424 GSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ 483

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           KPD ++F  +LSACS  GL +EG  + +  S  Y I+ +++HY CMV LL RAG LE++ 
Sbjct: 484 KPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAY 543

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             I  MP+ PD  +W +LL +CR H NV L E A + L E +P N G ++LL+NIYA  G
Sbjct: 544 AMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKG 603

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
             ++++R+R  +++ GL+K  G S IE    VH   +GD  +P   +I   L+++ M ++
Sbjct: 604 MWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMK 663

Query: 567 QQG--------LQETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
           + G        LQ+   Q        H E+LAV FGL++T     ++++ NLRICGDCH 
Sbjct: 664 KLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHV 723

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +K  S    REI +RD  RFH F+ G CSC DYW
Sbjct: 724 VIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 158/362 (43%), Gaps = 48/362 (13%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           + D +P  +V S++T+I  ++    +   L   S+M   G+ PD   + S + A   L  
Sbjct: 70  VLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSA 129

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L+  + +H     S       + + LV MY KC +I +A ++  R  + E DVV W+ LV
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDR--MFEPDVVSWSALV 187

Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGM----LNQDAEFKY--------- 311
           + Y +    DEA+RLF EM    V+ NLISW  MI+G     L  +A   +         
Sbjct: 188 AAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFE 247

Query: 312 ----------KSCASIGALYHGIWVHVY-IKKNQISIDNIELAY--------------DL 346
                      +   +  L  GI +H Y IK+  +S   +  A                +
Sbjct: 248 PDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQV 307

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F ++   +V    + I   +  G  + ++ LF ++++ G + + V++ ++++ CS  G  
Sbjct: 308 FDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRD 367

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG---HLEESANFITSMPIPPDVSIWSS 463
            E  + L ++ ++  +KP      C++   G      H + +  F     I  DV + S+
Sbjct: 368 IEALE-LFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSA 426

Query: 464 LL 465
           L+
Sbjct: 427 LI 428


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 194/542 (35%), Positives = 292/542 (53%), Gaps = 50/542 (9%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           N+C K  EV  LF +  N D+++WN M+S YT      + L L + M  +G   D+ T+ 
Sbjct: 472 NRCMKEAEV--LFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLA 528

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +++     L  +  GK +H +  +S   +   + + ++DMY KCG +  AQ     +  D
Sbjct: 529 TVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ-----FAFD 583

Query: 258 EVDV---VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + V   V WTTL+SG +++ E + A  +F +M    ++     I+ +       K  SC
Sbjct: 584 SIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLA------KASSC 637

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
             + AL  G  +H    K   + D               +I+ AY LF  I   N+  W 
Sbjct: 638 --LTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 695

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           +++   A  G  ++A+ LF +ME  G KPD+VTFI +LSACSH GLV E Y ++    R 
Sbjct: 696 AMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRD 755

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           Y IKP+++HY C+ D LGRAG ++E+ N I SM +    S++ +LL ACR   + +  + 
Sbjct: 756 YGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKR 815

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
               L E +PL+  A+VLL+N+YA A + D+M   R  ++   +KK  G+S IE    +H
Sbjct: 816 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 875

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ---------------HRERLAV 583
            F   D  NP +E IY  + ++   ++Q+G + ET                  H E+LAV
Sbjct: 876 LFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAV 935

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGL+ST   T IR++ NLR+CGDCH+ MK  S+VY+REIV+RD  RFHRF+ G CSC D
Sbjct: 936 AFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGD 995

Query: 644 YW 645
           YW
Sbjct: 996 YW 997



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/421 (22%), Positives = 186/421 (44%), Gaps = 34/421 (8%)

Query: 128 LYLVTRTVLLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
           L L     L+N   KL+++     +F+ +  RD+ISWN++I+      +  E + L  ++
Sbjct: 355 LMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQL 414

Query: 185 GAEGVSPDEVTMVSLISARTKLRD-LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
              G+ PD  TM S++ A + L + L + K +H+   ++       +   L+D Y +   
Sbjct: 415 LRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRC 474

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           + EA+ L GR   +  D+V W  ++SGY +S++  +   LF  M ++   S    ++ +L
Sbjct: 475 MKEAEVLFGR---NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVL 531

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                   K+C  + A+  G  VH Y  K+   +D               ++  A   F 
Sbjct: 532 --------KTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFD 583

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            I   +   WT++I+     G  ++A+ +F +M   G  PD+ T   L  A S    +++
Sbjct: 584 SIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQ 643

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G    +   ++ N          +VD+  + G ++++      + +  +++ W+++L   
Sbjct: 644 GRQIHANALKL-NCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGL 701

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVL-LANIYAKAGRLDDMSR-IRMKLRDMGLKKQ 526
             H   K A   FK +       D    + + +  + +G + +  + IR   RD G+K +
Sbjct: 702 AQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPE 761

Query: 527 L 527
           +
Sbjct: 762 I 762



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 134/293 (45%), Gaps = 47/293 (16%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K GK+KE   LF+++P RDV+ WN M+  Y  MG   E + L S     G+ P+E+T+  
Sbjct: 199 KFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRL 258

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L  +R    D E G+                     V  +          +++ R +I  
Sbjct: 259 L--SRISGDDSEAGQ---------------------VKSFENGNDASAVSEIISRNKI-- 293

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL----ISWTLMISGMLNQDAEFKYKSC 314
                    +SGY+ + +     + F +MVE +L    +++ L+++  +  D+       
Sbjct: 294 ---------LSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDS-LALGQQ 343

Query: 315 ASIGALYHGIWVHVYIKKNQIS----IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
               AL  G+ + + +  + I+    +  I LA  +F+ +SE+++  W SVIA  A +  
Sbjct: 344 VHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDL 403

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
             +A+ LF+++   G KPD  T  ++L A S    + EG   LSK+  V+ IK
Sbjct: 404 EVEAVCLFMQLLRCGLKPDHYTMTSVLKAASS---LPEGLS-LSKQIHVHAIK 452



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 59/289 (20%)

Query: 129 YLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           +LV   + + +KCG L    ++FDK+P RD++SWN++++ Y                 +E
Sbjct: 82  FLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ--------------SSE 127

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV                + +++    L   L +  +  S   L+ ++ +    G +  +
Sbjct: 128 GV----------------VENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCAS 171

Query: 248 QKLLG---RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
           +   G   +  +D  D V    LV+ Y+K  +  E R LF+EM  R+++ W LM+   L 
Sbjct: 172 ESFHGYACKIGLDGDDFVA-GALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYL- 229

Query: 305 QDAEFKYKSCA-SIGALYHGIWVH---VYIK-KNQISIDNIELA----------YDLFSE 349
              E  +K  A  + + +H   +H   + ++  ++IS D+ E                SE
Sbjct: 230 ---EMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSE 286

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           I  +N      +++ Y  AG     +  F++M E+  + DQVTFI +L+
Sbjct: 287 IISRN-----KILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLA 330


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 316/620 (50%), Gaps = 72/620 (11%)

Query: 75  ISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR- 133
           +ST      V  GDL  A++          ++  +   N L+ GY +    I L    R 
Sbjct: 14  LSTVAVAAAVRRGDLAGAEEAF-----ASTQLKTTTTYNCLLAGYAKASGLIRLADARRL 68

Query: 134 --------TVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                   TV  N        CG +    ++F  +P +DV SWNTM+S  +  G   E  
Sbjct: 69  FDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAA 128

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
            +   M       + V+  ++++A     D+   ++L     E T  I   L   +V  Y
Sbjct: 129 AMFRIMPVR----NAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAI---LWTAMVSGY 181

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI--SWT 296
              G + +A +  G   +   ++V W  +V+GYVK++  D+A R+F  MVE +++  + +
Sbjct: 182 MDTGNVQKAMEFFGAMPVR--NLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNAS 239

Query: 297 LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIE 341
            + S +L          C+++ AL  G  VH +  K  +S +               ++ 
Sbjct: 240 TLSSVLLG---------CSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLN 290

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  +F E+S K++  W ++I+ YA  G   +AI LF +M++ G  PD +T +A+L+AC 
Sbjct: 291 DACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACI 350

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GL D G          Y I+P++ HY CMVDLL RAG LE + N I SMP  P  S +
Sbjct: 351 HTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAY 410

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            +LL ACR ++N++ AE A + L E DP N GA+V LANIYA A +  D+SR+R  ++D 
Sbjct: 411 GTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDN 470

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------- 570
            + K  GYS +E  G  H+F S D  +P    I+  L+ ++M ++  G            
Sbjct: 471 AVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDV 530

Query: 571 -----QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
                 +  ++H E+LA+AFGLISTS   T+RI  NLRICGDCH+  K+ S++ +REI++
Sbjct: 531 EDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIIL 590

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F+GG CSC DYW
Sbjct: 591 RDTTRFHHFRGGHCSCGDYW 610


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 215/693 (31%), Positives = 336/693 (48%), Gaps = 94/693 (13%)

Query: 37  VCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P +     + ++CSS+   +    IH+H     L  D  +ST +       G L  AQ
Sbjct: 103 VTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQ 162

Query: 94  QIIRQ--GDEPEIKIWNSII--------ENQLINGYPQ---------------------- 121
            +       + +I  WN++I          Q I+   Q                      
Sbjct: 163 TLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQ 222

Query: 122 -----EVFAIYLY---------LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTM 164
                +  AI+ Y         +V +T LL+   KC  L    ++F+ +  ++ + W+ M
Sbjct: 223 ANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAM 282

Query: 165 ISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           I  Y       + L L   M    G++P   T+ +++ A  +L DL+ GK LH  + +S 
Sbjct: 283 IGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSG 342

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           M +  ++ N L+ MY KCG +  A   L   E+   D V ++ ++SG V++   ++A  +
Sbjct: 343 MDLDTTVGNSLISMYAKCGIMDNAVGFLD--EMIAKDTVSYSAIISGCVQNGYAEKALLI 400

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK----KNQISIDN 339
           F +M    +  +   +  +L         +C+ + AL HG   H Y       N  SI N
Sbjct: 401 FRQMQSSGIAPYLETMIALL--------PACSHLAALQHGTCCHGYTVVRGFTNDTSICN 452

Query: 340 -----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                      I ++ ++F  +  +++  W ++I  Y + G   +A+ LF E++  G KP
Sbjct: 453 AIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKP 512

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D VT IA+LSACSH GLV EG  + S  S+ +NIKP+M HY CMVDLL RAG+L+E+  F
Sbjct: 513 DDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTF 572

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I  MP  P+V IW +LL ACR H+N+++ E   K +    P   G  VL++NIY+  GR 
Sbjct: 573 IQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRW 632

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
           DD + IR   R  G KK  G S +E  G +H F  G   +P S  I   L E+ + +++ 
Sbjct: 633 DDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKL 692

Query: 569 GLQETS----------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G +  S                L H E++A+AFG+++TS  + I +  NLRIC DCHS +
Sbjct: 693 GYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAI 752

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K  + +  REI +RD  RFH F+ G C+C+D+W
Sbjct: 753 KFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 144/345 (41%), Gaps = 42/345 (12%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            +FD++P   V+ WN MI  Y   G +++ + L   M   GV+P   T   L+ A + L+
Sbjct: 62  HVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQ 121

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L++G+ +H       + +   +   L+ MY KCG + +AQ L       + D+V W  +
Sbjct: 122 ALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAM 181

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG---ALYHGI 324
           ++ +            F  +  + + S   M    +  ++        +IG   AL+ G 
Sbjct: 182 IAAFS-----------FHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGK 230

Query: 325 WVHVYIKKNQISIDNIEL----------------AYDLFSEISEKNVYLWTSVIAAYAMA 368
            +H Y  +N    DN+ L                A  +F+ +++KN   W+++I  Y + 
Sbjct: 231 AIHAYYIRN-FFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLH 289

Query: 369 GHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
                A+ L+ +M    G  P   T   +L AC+    +  G     KK   + IK  M 
Sbjct: 290 DSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRG-----KKLHCHMIKSGMD 344

Query: 428 H----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
                   ++ +  + G ++ +  F+  M I  D   +S+++  C
Sbjct: 345 LDTTVGNSLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGC 388



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 2/143 (1%)

Query: 330 IKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
           + +  IS + I+LA  +F +I + +V LW  +I  YA +G  Q++I L+L M + G  P 
Sbjct: 47  LARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPT 106

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
             TF  LL ACS    +  G   +   + +  +   +     ++ +  + GHL ++    
Sbjct: 107 NFTFPFLLKACSSLQALQLG-RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLF 165

Query: 450 TSMPIPP-DVSIWSSLLRACRCH 471
            S+     D+  W++++ A   H
Sbjct: 166 NSISHQDRDIVAWNAMIAAFSFH 188



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 40/185 (21%)

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-----SGMLNQDA------------ 307
           T L   ++  NE   AR +FD++ + +++ W +MI     SG   Q              
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVT 104

Query: 308 ------EFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
                  F  K+C+S+ AL  G  +H +     +S+D               ++  A  L
Sbjct: 105 PTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTL 164

Query: 347 FSEIS--EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
           F+ IS  ++++  W ++IAA++      + I    +M++ G  P+  T +++L       
Sbjct: 165 FNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQAN 224

Query: 405 LVDEG 409
            + +G
Sbjct: 225 ALHQG 229


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 184/543 (33%), Positives = 290/543 (53%), Gaps = 41/543 (7%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T +  KCG  K+  ++F+ L  RDVI+WNTMI  +   G   E  G   +M  EGV+PD 
Sbjct: 272 TKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDR 331

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T  +++SA  +   L  GK +H    +  +       N L++MY K G + +A+++  R
Sbjct: 332 ATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDR 391

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
             + + DVV WTTL+  Y   ++  E+   F +M+++ + +  +    +L        K+
Sbjct: 392 --MPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVL--------KA 441

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           C++  AL  G  +H  + K  +  D               ++E A  +F  +S ++V  W
Sbjct: 442 CSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTW 501

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            ++I      G   +A+  +  M+  G +P+  TF+ +LSAC    LV+EG    +  S+
Sbjct: 502 NTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSK 561

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            Y I P  +HY CMVD+L RAGHL E+ + I ++P+ P  ++W +LL ACR H NV++ E
Sbjct: 562 DYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGE 621

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A +H  + +P N G +V L+ IYA AG   D++++R  +++ G+KK+ G S IE  G V
Sbjct: 622 RAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEV 681

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMT----------------LQQQGLQETSLQHRERLA 582
           H F + D  +P ++EIY  L  ++                  L  +G +     H E+LA
Sbjct: 682 HSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLA 741

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           +A+GLIST   T IRI  NLR+C DCH+  K  S++  REI+ RD  RFH F+ G+CSC 
Sbjct: 742 IAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCG 801

Query: 643 DYW 645
           DYW
Sbjct: 802 DYW 804



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 202/429 (47%), Gaps = 59/429 (13%)

Query: 71  RDPQIST----QVFEFLVFTGDLGYAQQ----IIRQGDEPEIKIWNSIIENQLINGYPQE 122
           + PQ+ +    ++ +  V   DL   +Q    I+R G +P + I N++++          
Sbjct: 22  KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLK---------- 71

Query: 123 VFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
                        L   CG + E  QLFDK  N+ V+SWN MIS Y   G+ +E   L +
Sbjct: 72  -------------LYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFT 118

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
            M  E + PD+ T VS++SA +    L  G+ +H+ + E+ +    ++ N L+ MY KCG
Sbjct: 119 LMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCG 178

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
            + +A+++     +   D V WTTL   Y +S   +E+ + +  M++  +    +    +
Sbjct: 179 SVRDARRVFD--AMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNV 236

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLF 347
           L+        +C S+ AL  G  +H +I +++   D                 + A ++F
Sbjct: 237 LS--------ACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVF 288

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             +S ++V  W ++I  +  +G  ++A   F  M E G  PD+ T+  +LSAC+  G + 
Sbjct: 289 ECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLA 348

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL-R 466
            G +  ++ ++   +   ++    ++++  +AG ++++      MP   DV  W++LL R
Sbjct: 349 RGKEIHARAAK-DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLGR 406

Query: 467 ACRCHQNVK 475
              C Q V+
Sbjct: 407 YADCDQVVE 415



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/491 (20%), Positives = 204/491 (41%), Gaps = 79/491 (16%)

Query: 41  SLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97
           S D + + +SC    +    +++H H++   +  +  I+  + +     G +  A+Q+  
Sbjct: 28  SYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFD 87

Query: 98  QGDEPEIKIWNSIIENQLINGYPQEVFAIY------------------LYLVTRTVLLN- 138
           +     +  WN +I      G  QE F ++                  L   +   +LN 
Sbjct: 88  KFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNW 147

Query: 139 ----------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTS 170
                                       KCG +++  ++FD + +RD +SW T+   Y  
Sbjct: 148 GREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE 207

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
            G   E L     M  E V P  +T ++++SA   L  LE GK +H  + ES       +
Sbjct: 208 SGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRV 267

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
              L  MY KCG   +A+++   +E +   DV+ W T++ G+V S + +EA   F  M+E
Sbjct: 268 STALTKMYMKCGAFKDAREV---FECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE 324

Query: 290 RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----------- 338
             +       + +L+        +CA  G L  G  +H    K+ +  D           
Sbjct: 325 EGVAPDRATYTTVLS--------ACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMY 376

Query: 339 ----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
               +++ A  +F  + +++V  WT+++  YA      ++   F +M + G K +++T++
Sbjct: 377 SKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYM 436

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +L ACS+   +  G +  ++  +   +   +     ++ +  + G +E++      M +
Sbjct: 437 CVLKACSNPVALKWGKEIHAEVVKA-GLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSM 495

Query: 455 PPDVSIWSSLL 465
             DV  W++L+
Sbjct: 496 -RDVVTWNTLI 505



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 166/393 (42%), Gaps = 61/393 (15%)

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           +L  +  +G   D    V L+ +  K +DL +GK +H  +    +K +  + N L+ +Y 
Sbjct: 15  VLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA 74

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
            CG + EA++L  ++      VV W  ++SGY       EA  LF  M +  L       
Sbjct: 75  HCGSVNEARQLFDKF--SNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTF 132

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAY 344
             +L+        +C+S   L  G  +HV + +  ++ D               ++  A 
Sbjct: 133 VSILS--------ACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDAR 184

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS--- 401
            +F  ++ ++   WT++  AYA +G+ ++++  +  M +   +P ++T++ +LSAC    
Sbjct: 185 RVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLA 244

Query: 402 --------HGGLVDEGYD----FLSKKSRVY----NIKPKMQHYGC-----------MVD 434
                   H  +V+  Y       +  +++Y      K   + + C           M+ 
Sbjct: 245 ALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIR 304

Query: 435 LLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
               +G LEE+      M    + PD + ++++L AC     +   +       +   ++
Sbjct: 305 GFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVS 364

Query: 492 DGAHV-LLANIYAKAGRLDDMSRI--RMKLRDM 521
           D      L N+Y+KAG + D  ++  RM  RD+
Sbjct: 365 DVRFGNALINMYSKAGSMKDARQVFDRMPKRDV 397


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 194/553 (35%), Positives = 298/553 (53%), Gaps = 46/553 (8%)

Query: 128 LYLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +YL TR ++L  KC  L     +FD++  R+V+SW  MIS Y+  G   E L L  +M  
Sbjct: 45  VYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLR 104

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
               P+E T  +++S+ T     E+G+ +H  + +   +    + + L+DMY K G+I E
Sbjct: 105 SDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHE 164

Query: 247 AQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
           A+   G +E + E DVV  T ++SGY +    +EA  LF  +    + S  +  + +L  
Sbjct: 165 AR---GVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLT- 220

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEI 350
                  + + + AL HG  VH ++ + ++          ID      N+  A  +F+ +
Sbjct: 221 -------ALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNM 273

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLF-LEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
             + V  W +++  Y+  G   + + LF L  EE   KPD VTF+A+LS CSHGGL D+G
Sbjct: 274 PVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKG 333

Query: 410 YDFLSKKSRVYN-IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
            +   +     + I+  ++HYGC++DLLGRAG +EE+   I  MP  P  +IW SLL AC
Sbjct: 334 LEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGAC 393

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H N  + E     L E +P N G +V+L+N+YA AGR +D+  +R  + +  + K+ G
Sbjct: 394 RVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPG 453

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QE 572
            S IE    +H F + D  +P  EE++L + E+ +  ++ G                 ++
Sbjct: 454 RSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEK 513

Query: 573 TSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
             L H E+LA+AFGLISTSE   +R++ NLRIC DCH+F K  S+VY R++ IRD  RFH
Sbjct: 514 ILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFH 573

Query: 633 RFQGGQCSCRDYW 645
              GG CSC DYW
Sbjct: 574 HVAGGICSCGDYW 586



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 49/288 (17%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           ++ E +R+H+H+I T  +    +ST++         LG A+ +  +  E  +  W ++I 
Sbjct: 25  AVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMIS 84

Query: 113 NQLINGYPQEVFAIYLYLV---------TRTVLLNKC----------------------- 140
                G+  E   +++ ++         T   +L+ C                       
Sbjct: 85  GYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYEN 144

Query: 141 ---------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
                          G++ E   +F+ LP RDV+S   +IS Y  +G+  E L L  ++ 
Sbjct: 145 HIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQ 204

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            EG+S + VT  SL++A + L  L+ GK +H  +    +     L N L+DMY KCG + 
Sbjct: 205 REGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLN 264

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
            A+K+     +    V+ W  ++ GY K  +  E  +LF  M E N +
Sbjct: 265 YARKIFNNMPVR--TVISWNAMLVGYSKHGKGIEVVKLFKLMREENKV 310


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 209/654 (31%), Positives = 317/654 (48%), Gaps = 113/654 (17%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQG-DEPEIKIW 107
           + C +  E ++IH+ ++ + L++DP   T+   F + +    YA  +   G D P+  +W
Sbjct: 19  QKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLW 78

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
                N +I G                     C             P+R ++ ++ M+ C
Sbjct: 79  -----NLMIRGL-------------------SC----------SDQPDRSLLLYHRMLCC 104

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
                 Y                    T   L+ A + L   +    +H  + +      
Sbjct: 105 SAPHNAY--------------------TFPFLLKACSNLSAFQETTQIHAHITKFGYGHD 144

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
              +N L++ Y   G    A  L  R  I E D V W +++ GYVK+ E D A  LF +M
Sbjct: 145 IYAVNSLINSYAVTGNFKHAHLLFDR--IQEPDAVSWNSVIKGYVKAGEMDMALTLFRKM 202

Query: 288 VERN-LISWTLMISGM----LNQDA-------------------EFKYKSCASIGALYHG 323
            E+N  ISWT MISG     +N++A                        +C+ +GAL  G
Sbjct: 203 PEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQG 262

Query: 324 IWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMA 368
            W+H Y  K +  ID++               E A  +F  +  K+V +WT++I+ YA  
Sbjct: 263 KWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYH 322

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G  ++AI  FLEM+  G KP+ +TF A+L+ACS+ GLV+EG    +   R YN+KP ++H
Sbjct: 323 GLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEH 382

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           YGCMVDLLGRAG L E+  FI  MP+ P+  IW SLL+AC+ H+N++L E   + L E D
Sbjct: 383 YGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMD 442

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
             + G +V +ANI+A   + D  +  R  +R+ G+ K  G S I   G  H+F +GD  +
Sbjct: 443 SNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSH 502

Query: 549 PHSEEIYLMLNEIEMTLQQQG----LQETSL-------------QHRERLAVAFGLISTS 591
              +EI      +   L++ G    L++  L             QH E+LA+ +GL+ T 
Sbjct: 503 AEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTK 562

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             TTIRI+ NLR+C DCH  M + S++Y R+IV+RD  RFH F+ G+CSC DYW
Sbjct: 563 PGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 204/602 (33%), Positives = 309/602 (51%), Gaps = 94/602 (15%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV--FTGDLGYAQQIIRQGDEPEIKI 106
           +SC S+   ++IH+ +    L +D     ++  F    F G+L YA+++ +    P + I
Sbjct: 45  KSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLI 104

Query: 107 WNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCGKLKEVCQ--------- 148
           +N II+     G  +    ++  L          T   +    G L EV +         
Sbjct: 105 YNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVT 164

Query: 149 -----------------------------LFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                                        LFD++P+RDVISWN MIS Y     + + + 
Sbjct: 165 KTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAIN 224

Query: 180 LLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
           +  +M  E G+ PDE T+VS +SA T L+ LE+GK +H ++ ++ +K +  + N L+DMY
Sbjct: 225 VFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDN-VKFTPIIGNALLDMY 283

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KCG +  A+ +    E+   +V+ WTT+VSGY    E +EAR LF+    R+++ WT M
Sbjct: 284 CKCGCLSIARAVFE--EMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAM 341

Query: 299 ISGMLNQD------AEFK-----------------YKSCASIGALYHGIWVHVYIKKNQI 335
           I+G +  +      A F+                    CA  GA+  G W+H +I +N+I
Sbjct: 342 INGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRI 401

Query: 336 SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
            ID                IE A ++F  +  K+   WTS+I   AM G   KA++LF +
Sbjct: 402 PIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSK 461

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M++ G +PD +TFI +LSACSHGGLV+EG  F +     Y IKPK++HYGC+VDLLGRAG
Sbjct: 462 MKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAG 521

Query: 441 HLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
            L E+   I  +P       V ++ SLL ACR + NV++ E   K L + +  +   H L
Sbjct: 522 LLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTL 581

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           LANIYA A R +D++++R K++D+G+KK  G S IE    +H+F SG   +P   EIY M
Sbjct: 582 LANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPSHPEMREIYYM 641

Query: 558 LN 559
           LN
Sbjct: 642 LN 643



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 29/252 (11%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P    V+    +C+++   E   +IH H +  N+   P I   + +     G L  A+ +
Sbjct: 237 PDEATVVSTLSACTALKRLELGKKIH-HYVRDNVKFTPIIGNALLDMYCKCGCLSIARAV 295

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
             +     +  W +     +++GY                    CG+L+E  +LF+  P 
Sbjct: 296 FEEMPSKNVICWTT-----MVSGYAN------------------CGELEEARELFEGSPI 332

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RDV+ W  MI+ Y     + E + L  +M    V PD+  +VSL++   +   +E GK +
Sbjct: 333 RDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWI 392

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           H F++E+ + I   +   L++MY KCG I +A ++   Y +   D   WT+++ G   + 
Sbjct: 393 HEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIF--YGLRVKDTASWTSIICGLAMNG 450

Query: 276 ERDEARRLFDEM 287
           +  +A  LF +M
Sbjct: 451 KTSKALELFSKM 462


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 218/681 (32%), Positives = 334/681 (49%), Gaps = 92/681 (13%)

Query: 47  VERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V ++CS   +I++   IHSH     L  D  + T + +F    G L  AQ++       +
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD 174

Query: 104 IKIWNSIIEN-----------QLINGYPQEVF------------------------AIYL 128
           +  WN++I             QLI    +E                          A++ 
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHG 234

Query: 129 YLVTR---------TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           Y V R         T LL+   KC  L    ++FD +  R+ +SW+ MI  Y +    +E
Sbjct: 235 YCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKE 294

Query: 177 GLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
            L L  +M   + + P  VT+ S++ A  KL DL  G+ LH ++ +    +   L N L+
Sbjct: 295 ALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLL 354

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
            MY KCG I +A +     E++  D V ++ +VSG V++     A  +F  M    +   
Sbjct: 355 SMYAKCGVIDDAIRFFD--EMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------I 340
              + G+L         +C+ + AL HG   H Y+     + D                I
Sbjct: 413 LTTMLGVL--------PACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKI 464

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
             A ++F+ +   ++  W ++I  Y + G   +A+ LF ++   G KPD +TFI LLS+C
Sbjct: 465 SFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSC 524

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLV EG  +    SR ++I P+M+H  CMVD+LGRAG ++E+ +FI +MP  PDV I
Sbjct: 525 SHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 584

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           WS+LL ACR H+N++L E   K +    P + G  VLL+NIY+ AGR DD + IR+  +D
Sbjct: 585 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKD 644

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ--------- 571
            GLKK  G S IE  G VH F  GD  +    +I   L E+ + +++ G Q         
Sbjct: 645 WGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQD 704

Query: 572 -------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                  +  L H E+LA+AFG+++      I +  NLR+CGDCH+ +K  + +  REI 
Sbjct: 705 VEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREIT 764

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD  RFH F+ G C+C D+W
Sbjct: 765 VRDANRFHHFKNGTCNCGDFW 785



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 170/391 (43%), Gaps = 54/391 (13%)

Query: 128 LYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           L+ +TR  L   C ++    +LFD++PN  VI WN +I  Y   G +   + L   M   
Sbjct: 46  LHKLTRLYL--SCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHL 103

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV P++ T   ++ A + L  +E G  +H   +   ++    +   LVD Y KCG + EA
Sbjct: 104 GVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEA 163

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           Q+L     +   DVV W  +++G       D+A +L  +M E  +   +  I G+L    
Sbjct: 164 QRLFS--SMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVG 221

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------------IELAYDLFSEI 350
           E K        AL HG  +H Y  +   S DN                 +  A  +F  +
Sbjct: 222 EAK--------ALGHGKALHGYCVRR--SFDNGVVVGTGLLDMYAKCQCLLYARKIFDVM 271

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEG 409
             +N   W+++I  Y  +   ++A++LF +M  +    P  VT  ++L AC+    +  G
Sbjct: 272 GVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG 331

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLL---------GRAGHLEESANFITSMPIPPDVSI 460
                +K   Y IK      G ++D+L          + G ++++  F   M  P D   
Sbjct: 332 -----RKLHCYIIK-----LGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMN-PKDSVS 380

Query: 461 WSSLLRACRCHQNVKLAEHAFK--HLTETDP 489
           +S+++  C  + N  +A   F+   L+  DP
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGIDP 411


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 299/542 (55%), Gaps = 45/542 (8%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMI-SCYTSMGMYREGLGLLSKMGAEGV-SPDEV 194
           L+  G      ++F ++PN  + ++N++I  C  +    +E + L   M  +G  +P+  
Sbjct: 34  LSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTF 93

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           TM  ++ A + +  LE GK +H  +  S    S  + + LV+ Y KC +I  A+K+    
Sbjct: 94  TMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFD-- 151

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
           EI E ++V W+ +VSGY +    +EA  +F EM    +    + + G+L+        +C
Sbjct: 152 EITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLS--------AC 203

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
           A +GAL  G WVH YIKK  I +D                IE A ++F E+  K+   W+
Sbjct: 204 AMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWS 263

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           S+I   A+ G A+ A+++F  MEE   KP+ VTFI +LSAC+HGGLV +G  + S    +
Sbjct: 264 SMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLEL 323

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
             I+P M+HYGCMVDLL R G ++E+ +F   +P  PD  IW +LL A   ++ ++ AE 
Sbjct: 324 -GIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPT-PDPVIWRTLLVAYTKNRMLQKAEM 381

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
               L E +P     +++LAN+YA   +L+ +S +R  +++ G+K   G + IE  GFVH
Sbjct: 382 VAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVH 441

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAV 583
            F +GD  +P +EEI   L ++ + +   G                 +    +H ERLA+
Sbjct: 442 NFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEEKENVLYEHSERLAI 501

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           A+GL+ T    TIRIV NLR+CGDCH   K+ S++Y+REI++RD  RFH+F  G CSC+D
Sbjct: 502 AYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVNGTCSCKD 561

Query: 644 YW 645
           YW
Sbjct: 562 YW 563


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 194/559 (34%), Positives = 303/559 (54%), Gaps = 46/559 (8%)

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
           GY ++VF     L     + ++CG + +  ++FD +P +D ++W+TM++ + S G   E 
Sbjct: 141 GYGRDVFVCSALLH----VYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEA 196

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
           LG+ S+M   GV+ DEV MV +I A T   +  MG ++H       M++   +   LVDM
Sbjct: 197 LGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDM 256

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT- 296
           Y K G    A+++     +   + V W  L+SG+ ++   DEA  LF EM    L   + 
Sbjct: 257 YAKNGHFDVARQVF--RMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSG 314

Query: 297 LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK--------NQISID------NIEL 342
            ++S +L         +CA +G L  G  +H +I +            +D      ++E 
Sbjct: 315 ALVSALL---------ACADVGFLKLGKSIHGFILRRLEFQCILGTAVLDMYSKCGSLES 365

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  LF+++S +++ LW ++IA     G    A+ LF E+ ETG KPD  TF +LLSA SH
Sbjct: 366 ARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSH 425

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GLV+EG  +  +    + I+P  +H  C+VDLL R+G +EE+   + SM   P + IW 
Sbjct: 426 SGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWV 485

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL  C  ++ ++L E   K + E+ P + G   L++N+YA A + D +  IR  ++D G
Sbjct: 486 ALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSG 545

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG------------- 569
            KK  GYSLIE  G  H F   D  +P  +EI  M++++   +++ G             
Sbjct: 546 SKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLD 605

Query: 570 --LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
             ++E  L  H ERLA+AFGL++TS  T + I+ NLR+CGDCH  +K  S++ +REIV+R
Sbjct: 606 EDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVR 665

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F+ G CSC DYW
Sbjct: 666 DAKRFHHFKDGACSCGDYW 684


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 283/541 (52%), Gaps = 44/541 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCGK+K    LF +    D++++N MI  YTS G     L L  ++   G      T
Sbjct: 265 LYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSST 324

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +VSL+     L    +   +H +  +S      S+   L  +Y K  +I  A+KL    E
Sbjct: 325 LVSLVPVSGHLM---LIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFD--E 379

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
             E  +  W  ++SGY ++   ++A  LF EM         + I+ +L+        +CA
Sbjct: 380 SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILS--------ACA 431

Query: 316 SIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTS 360
            +GAL  G WVH           +Y+    I +     +I  A  LF  + +KN   W +
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNT 491

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+ Y + GH Q+A+ +F EM  +G  P  VTF+ +L ACSH GLV EG +  +     Y
Sbjct: 492 MISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
             +P ++HY C+VD+LGRAGHL+ +  FI +MPI P  S+W +LL ACR H++  LA   
Sbjct: 552 GFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTV 611

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L E DP N G HVLL+NI++        + +R   +   L K  GY+LIE G   H 
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSLQ---------------HRERLAVA 584
           FTSGD  +P  + I+  L ++E  +++ G Q ET L                H ERLA+A
Sbjct: 672 FTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI+T   T IRI+ NLR+C DCH+  K+ S++  R IV+RD  RFH F+ G CSC DY
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791

Query: 645 W 645
           W
Sbjct: 792 W 792



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/491 (21%), Positives = 205/491 (41%), Gaps = 87/491 (17%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           +  +SI    + H+ ++      D  + T++ + L   G + YA+ I      P++ ++N
Sbjct: 28  KRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFN 87

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRT-------------------------------VLL 137
            ++    +N  P    A++ +L   T                                ++
Sbjct: 88  VLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIV 147

Query: 138 NKCG-----------------KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           + C                  ++++  ++FD++P +D I WNTMIS Y    MY E + +
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207

Query: 181 LSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
              +  E  +  D  T++ ++ A  +L++L +G  +H    ++       +L   + +Y 
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYS 267

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
           KCGKI  A  L    E    D+V +  ++ GY  + E + +  LF E          LM+
Sbjct: 268 KCGKIKMASTLF--REFRRPDIVAYNAMIHGYTSNGETELSLSLFKE----------LML 315

Query: 300 SGMLNQDAEFKYKSCASI----GALYHGIWVHVY-IKKNQIS--------------IDNI 340
           SG     A+ K  +  S+    G L     +H Y +K N +S              ++ I
Sbjct: 316 SG-----AKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEI 370

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           E A  LF E  EK++  W ++I+ Y   G  + AI LF EM+ +   P+ VT   +LSAC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSAC 430

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           +  G +  G  ++    R  + +  +     ++ +  + G + E+      MP   +V+ 
Sbjct: 431 AQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVT- 488

Query: 461 WSSLLRACRCH 471
           W++++     H
Sbjct: 489 WNTMISGYGLH 499



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 169/426 (39%), Gaps = 78/426 (18%)

Query: 25  VPKMRISRKFANVCPVSLDVIMVERSCSSIDEFE------RIHSHLITTNLMRDPQISTQ 78
           V  +++ R   N     LD   +     ++ E +      +IHS    T       + T 
Sbjct: 202 VESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTG 261

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII-------ENQL---------------- 115
                   G +  A  + R+   P+I  +N++I       E +L                
Sbjct: 262 FISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLK 321

Query: 116 ---------INGYPQEVFAIYLYLVTR------------TVLLNKCGKLKEVCQLFDKLP 154
                    ++G+   ++AI+ Y +              T + +K  +++   +LFD+ P
Sbjct: 322 SSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESP 381

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
            + + SWN MIS YT  G+  + + L  +M     SP+ VT+  ++SA  +L  L +GK 
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKW 441

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +H  +  +  + S  +   L+ MY KCG I EA++L     + + + V W T++SGY   
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDF--MPKKNEVTWNTMISGYGLH 499

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
               EA  +F EM+           SG+      F    C      + G+     +K+  
Sbjct: 500 GHGQEALTIFSEMLN----------SGIAPTPVTFL---CVLYACSHAGL-----VKEGD 541

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
              +++   Y       E +V  +  V+     AGH Q+A+     +E    +P    + 
Sbjct: 542 EIFNSMIHRYGF-----EPSVKHYACVVDILGRAGHLQRALQF---IEAMPIQPGPSVWE 593

Query: 395 ALLSAC 400
            LL AC
Sbjct: 594 TLLGAC 599


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/588 (32%), Positives = 308/588 (52%), Gaps = 93/588 (15%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD+   ++V+ +N MI  Y +  +Y E L +   M +   +PD  T   ++ A + L +
Sbjct: 93  IFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L +G  +H  + +  +  +  + N LV MY KCG + EA+K+L   ++   DVV W ++V
Sbjct: 153 LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD--QMPYRDVVSWNSMV 210

Query: 269 SGYVKSNERDEA-------------------------------------RRLFDEMVERN 291
           +GY +S + D+A                                       +F+ M ++N
Sbjct: 211 AGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKN 270

Query: 292 LISWTLMISGMLN------------QDAEFKYK-----------SCASIGALYHGIWVHV 328
           LISW +MI+  +N            Q  E   K           +C  + AL+ G  +H 
Sbjct: 271 LISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHK 330

Query: 329 YIKKNQIS----IDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           YI+K  +     ++N           +E A D+F ++  ++V  WTS+++AY  +G    
Sbjct: 331 YIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYD 390

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A+ LF +M ++G  PD + F+++LSACSH GL+D+G  +    +  Y I P+++H+ CMV
Sbjct: 391 AVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMV 450

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DL GRAG +EE+ +FI  MP+ P+  +W +LL ACR H  + +   A   L +  P   G
Sbjct: 451 DLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSG 510

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            +VLL+NIYAKAG   D+  +R  ++ +G+KK  G S +E  G VH F +GD ++P ++ 
Sbjct: 511 YYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKN 570

Query: 554 IYLMLNEIEMTLQQQGL---QETSLQ-------------HRERLAVAFGLISTSEKTTIR 597
           IY  L+ +   +++ G     E++L              H E+LA+ F +++T + T IR
Sbjct: 571 IYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIR 630

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I  NLR+CGDCH  +K+ S++ +R I++RD  RFH F  G CSC DYW
Sbjct: 631 ITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
          Length = 646

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 293/551 (53%), Gaps = 72/551 (13%)

Query: 148 QLFDKLPNRDV------ISWNTMISCYTSMGMYREGLGLLSKMG-AEGVSPDEVTMVSLI 200
           QL D+LP           ++N++IS     G+      L  +M  A GV  D VT+++L+
Sbjct: 115 QLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLALV 174

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV- 259
                +  L +   LH     S +  + S+ N LV +Y + G  G +   L R   +E+ 
Sbjct: 175 ----PVAPLGIVPQLHALAARSGLAANTSVANCLVSVYARGGGGGAS---LARQVFEEMP 227

Query: 260 ----DVVLWTTLVSGYVKSNERDEARRLFDEM-------VERNLISWTLMISGMLNQDAE 308
               D+V W  ++S + ++    EA  L+  M       VE + ++   ++S        
Sbjct: 228 RASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLS-------- 279

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISI-DNIEL----------------AYDLFSEIS 351
               SCA  GA   G+ V  Y++       DN+ L                A +LF E+ 
Sbjct: 280 ----SCAHTGARRVGLDVEQYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMP 335

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           E++V  WT++I  Y M G    A+DLF  M    T PD V  + LLSACSH G+ DEG  
Sbjct: 336 ERSVVSWTALIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRK 395

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           + S   R Y ++PK++HY CMVDLLGRAG L+E+   I SMP+  D ++W +LL AC+ H
Sbjct: 396 YFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIH 455

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           +NV++ E AF+ +   +P N G +VL+ANIYA AG+LD ++++R  +R  GL+K+ G S 
Sbjct: 456 KNVEMGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSY 515

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ--------------- 576
           +E  G VH F + D  +P +  IY ++ E+E  ++++   +   +               
Sbjct: 516 VEHKGKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLV 575

Query: 577 --HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
             H E+LAVAFGL++T   + I ++ NLR+CGDCHSF+K  S++ NR  ++RD  RFHRF
Sbjct: 576 GFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRF 635

Query: 635 QGGQCSCRDYW 645
           + G CSCRDYW
Sbjct: 636 ENGACSCRDYW 646



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG L +  +LFD++P R V+SW  +I  Y   G     + L   M +E  +PD V MV 
Sbjct: 320 RCGSLAQAQELFDEMPERSVVSWTALIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVG 379

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           L+SA +     + G+     +E     +   L +Y  +VD+  + G++ EA++L+    +
Sbjct: 380 LLSACSHAGMYDEGRKYFSTMERDYC-LRPKLEHYTCMVDLLGRAGRLDEARELIASMPM 438

Query: 257 DEVDVVLWTTLV 268
              D  +W  L+
Sbjct: 439 -AADGAVWGALL 449


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 302/564 (53%), Gaps = 72/564 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L +   LFD++P  D +S+NT++SC+ + G       L + M       D V+  +++
Sbjct: 112 GRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR----DVVSWNTMV 167

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           S  +K   +E  K + L      M +  S+    +   F C +   A +   R   ++ D
Sbjct: 168 SGLSKSGAVEEAKAVFL-----AMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGD 222

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKYKS--- 313
            VLWT +VSGY+      +A   F+ M  RNL+SW  +++G +      DA   +++   
Sbjct: 223 AVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVR 282

Query: 314 -----------------CASIGALYHGIWVHVYIKKNQISID---------------NIE 341
                            C+++ AL  G  +H +  K  +S +               ++ 
Sbjct: 283 EANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLS 342

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  LF E+  ++V  W ++I+ YA  G  ++AI+LF  M++ G +P+ +TF+A+L+AC 
Sbjct: 343 SACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACI 402

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GL D G         +Y I+P++ HY CMVDLL RAG LE + + I SMP  P  S +
Sbjct: 403 HTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAY 462

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            +LL ACR ++N++ AE A   L E DP + GA+V LANIYA A + DD+SR+R  ++D 
Sbjct: 463 GTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDN 522

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNP--------------------HSEEIYLMLNEI 561
            + K  GYS IE  G +H+F S D  +P                    +  ++  +L+++
Sbjct: 523 AVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDV 582

Query: 562 EMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
           + TL+ Q L    ++H E+LA++FGLIST+   T+RI  NLR+CGDCH+  KV S++ +R
Sbjct: 583 DETLKVQML----MRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDR 638

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           EI++RD  RFH F+GG CSC DYW
Sbjct: 639 EIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L   C+LF ++  RDV++WN MIS Y   G  +E + L  +M  EGV P+ +T V+
Sbjct: 337 KCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVA 396

Query: 199 LISA 202
           +++A
Sbjct: 397 VLTA 400


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 295/549 (53%), Gaps = 49/549 (8%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV- 189
           T LL+   KCG L    ++FD +P R+ ++W+ +I  +       +   L   M A+G+ 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 190 --SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
             SP   ++ S + A   L  L MG+ LH  L +S +    +  N L+ MY K G I +A
Sbjct: 337 FLSP--TSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
             L    E+   D V ++ LVSGYV++   +EA  +F +M   N+      +  ++    
Sbjct: 395 IALFD--EMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI---- 448

Query: 308 EFKYKSCASIGALYHGIWVH--VYIK--KNQISIDN-----------IELAYDLFSEISE 352
                +C+ + AL HG   H  V I+   ++ SI N           I+L+  +F+ +  
Sbjct: 449 ----PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPS 504

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           +++  W ++IA Y + G  ++A  LFLEM   G  PD VTFI LLSACSH GLV EG  +
Sbjct: 505 RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHW 564

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
                  Y + P+M+HY CMVDLL R G L+E+  FI SMP+  DV +W +LL ACR ++
Sbjct: 565 FHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYK 624

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N+ L +   + + E  P   G  VLL+NIY+ AGR D+ + +R+  +  G KK  G S I
Sbjct: 625 NIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWI 684

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQ 576
           E  G +H F  GD  +P S EIY  L+ I + +++ G Q  +                + 
Sbjct: 685 EINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALIC 744

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H E+LA+A+G++S SE  TI +  NLR+CGDCH+ +K  S +  R I++RD  RFH F+ 
Sbjct: 745 HSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKN 804

Query: 637 GQCSCRDYW 645
           GQCSC D+W
Sbjct: 805 GQCSCGDFW 813



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 172/369 (46%), Gaps = 47/369 (12%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG-LLS-KM 184
           L   T LL+   KC  L +   +F  +P RD+++WN M++ Y   GMY   +  LLS +M
Sbjct: 160 LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 219

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL--------EESTMKISGSLL--NYL 234
               + P+  T+V+L+    +   L  G ++H +           S  K++  +L    L
Sbjct: 220 QMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTAL 279

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-- 292
           +DMY KCG +  A+++     +   + V W+ L+ G+V  +   +A  LF  M+ + L  
Sbjct: 280 LDMYAKCGSLLYARRVFD--AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 337

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------------- 338
           +S T + S +         ++CAS+  L  G  +H  + K+ +  D              
Sbjct: 338 LSPTSIASAL---------RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 388

Query: 339 -NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             I+ A  LF E++ K+   ++++++ Y   G A++A  +F +M+    +PD  T ++L+
Sbjct: 389 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 448

Query: 398 SACSHGGLVDEGYDFLSKKSRVY-NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
            ACSH   +  G    S  S +   +  +      ++D+  + G ++ S      MP   
Sbjct: 449 PACSHLAALQHGR--CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SR 505

Query: 457 DVSIWSSLL 465
           D+  W++++
Sbjct: 506 DIVSWNTMI 514



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 175/428 (40%), Gaps = 71/428 (16%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMG--MYREGLGLLSKMGAEGVSPDEVTMVS 198
           G L     LFD++P+ DV ++N +I  Y+S       +GL L  +M    V+P+  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A + L D   G+ +H     + ++    +   L+DMY KC  + +A  +     +  
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFA--TMPA 188

Query: 259 VDVVLWTTLVSGYVKSN--ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
            D+V W  +++GY          A  L  +M    L      +  +L   A+        
Sbjct: 189 RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ-------- 240

Query: 317 IGALYHGIWVHVY-IKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            GAL  G  VH Y I+    S  N +      S++++  V L T+++  YA  G    A 
Sbjct: 241 QGALAQGTSVHAYRIRACLHSNRNSK------SKLTD-GVLLGTALLDMYAKCGSLLYAR 293

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
            +F  M       ++VT+ AL+           G+   S+ ++ + +   M         
Sbjct: 294 RVFDAMPAR----NEVTWSALIG----------GFVLCSRMTQAFLLFKAM--------- 330

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GA 494
                 L +   F++   I       +S LRAC    ++++ E     L ++    D  A
Sbjct: 331 ------LAQGLCFLSPTSI-------ASALRACASLDHLRMGEQLHALLAKSGVHADLTA 377

Query: 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEI 554
              L ++YAKAG +D    +     +M +K  + YS +          SG + N  +EE 
Sbjct: 378 GNSLLSMYAKAGLIDQAIAL---FDEMAVKDTVSYSAL---------VSGYVQNGRAEEA 425

Query: 555 YLMLNEIE 562
           +L+  +++
Sbjct: 426 FLVFKKMQ 433


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/588 (32%), Positives = 308/588 (52%), Gaps = 93/588 (15%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD+   ++V+ +N MI  Y +  +Y E L +   M +   +PD  T   ++ A + L +
Sbjct: 93  IFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L +G  +H  + +  +  +  + N LV MY KCG + EA+K+L   ++   DVV W ++V
Sbjct: 153 LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD--QMPYRDVVSWNSMV 210

Query: 269 SGYVKSNERDEA-------------------------------------RRLFDEMVERN 291
           +GY +S + D+A                                       +F+ M ++N
Sbjct: 211 AGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKN 270

Query: 292 LISWTLMISGMLN------------QDAEFKYK-----------SCASIGALYHGIWVHV 328
           LISW +MI+  +N            Q  E   K           +C  + AL+ G  +H 
Sbjct: 271 LISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHK 330

Query: 329 YIKKNQIS----IDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           YI+K  +     ++N           +E A D+F ++  ++V  WTS+++AY  +G    
Sbjct: 331 YIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYD 390

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A+ LF +M ++G  PD + F+++LSACSH GL+D+G  +    +  Y I P+++H+ CMV
Sbjct: 391 AVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMV 450

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DL GRAG +EE+ +FI  MP+ P+  +W +LL ACR H  + +   A   L +  P   G
Sbjct: 451 DLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSG 510

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            +VLL+NIYAKAG   D+  +R  ++ +G+KK  G S +E  G VH F +GD ++P ++ 
Sbjct: 511 YYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKN 570

Query: 554 IYLMLNEIEMTLQQQGL---QETSLQ-------------HRERLAVAFGLISTSEKTTIR 597
           IY  L+ +   +++ G     E++L              H E+LA+ F +++T + T IR
Sbjct: 571 IYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIR 630

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I  NLR+CGDCH  +K+ S++ +R I++RD  RFH F  G CSC DYW
Sbjct: 631 ITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 302/559 (54%), Gaps = 49/559 (8%)

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
           GY  +VF     L     L ++CG ++E  ++FD +P +D ++W+TM++ + + G   E 
Sbjct: 137 GYGHDVFVCSALLH----LYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEA 192

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
           L + S+M   GVS DEV MV +I A     +  +G ++H  L    M++       LV M
Sbjct: 193 LAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSM 252

Query: 238 YFKCGKIGEAQKL--LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL--I 293
           Y K G +  A ++  +  Y  D    V W+ L+SG+ ++    EA  LF E+    L   
Sbjct: 253 YAKNGHLDVACQVFRMMPYRND----VTWSALISGFAQNGRAVEALDLFRELQADGLQPC 308

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK--------NQISID------N 339
           SW L +S +L         +CAS+G L  G  +H +I +            +D      +
Sbjct: 309 SWAL-VSALL---------ACASVGFLKLGKSIHGFILRRLEWQCILGTAVLDMYSKCGS 358

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           +E A  LF+++S +++ LW ++IA     G    A+ LF E+ ETG KPD  TF +LLSA
Sbjct: 359 LESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSA 418

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
            SH GLV+EG  +  +  + + I+P  +HY C+VDLL R+G +EE+ + + SM   P ++
Sbjct: 419 LSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIA 478

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           IW  LL  C  ++ ++L E   K + E  P + G   L++N+YA A + D +  IR  ++
Sbjct: 479 IWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMK 538

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------- 569
           D G KK  GYSLIE  G  H F   D  +P   EI  M+ ++   +++ G          
Sbjct: 539 DSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYH 598

Query: 570 -LQETSL--QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
            L E  L   H ERLA+AFGL++TS  T + I+ NLR+CGDCH  +K  S++ +REIV+R
Sbjct: 599 DLDEDQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVR 658

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F+ G CSC DYW
Sbjct: 659 DAKRFHHFKDGACSCGDYW 677


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/529 (34%), Positives = 291/529 (55%), Gaps = 41/529 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            +F  + N +V +WNT+I  Y              +M    V PD  T   L+ A +K  
Sbjct: 73  NVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSL 132

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           ++  G+ +H     +  +    + N L+ +Y  CG    A K+     + E D+V W ++
Sbjct: 133 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFEL--MKERDLVAWNSM 190

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++G+  +   +EA  LF EM    +      +  +L+  AE        +GAL  G  VH
Sbjct: 191 INGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAE--------LGALELGRRVH 242

Query: 328 VYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
           VY+ K  +S ++               I  A  +FSE+SE+N   WTS+I   A+ G  +
Sbjct: 243 VYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGE 302

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +A++LF EME  G  P ++TF+ +L ACSH G++DEG+++  +      I P+++HYGCM
Sbjct: 303 EALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCM 362

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLL RAG ++++  +I +MP+ P+  IW +LL AC  H ++ L E A  HL   +P + 
Sbjct: 363 VDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHS 422

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G +VLL+N+YA   R  D+  IR  +   G+KK  GYSL+E G  V++FT GD  +P S+
Sbjct: 423 GDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQ 482

Query: 553 EIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTI 596
           ++Y +L +I   L+ +G                +E +L  H E++A+AF L++T   T I
Sbjct: 483 DVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPI 542

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R++ NLR+C DCH  +K+ +++Y+REIVIRD  RFH F+GG CSC+DYW
Sbjct: 543 RVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 51/267 (19%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           ++ E E IHS  I         +   +       GD   A ++     E ++  WNS+I 
Sbjct: 133 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMIN 192

Query: 113 NQLINGYPQEVFAIY-----------------------------------LYL------- 130
              +NG P E   ++                                   +YL       
Sbjct: 193 GFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSK 252

Query: 131 ---VTRTVL--LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
              VT ++L    KCG ++E  ++F ++  R+ +SW ++I      G   E L L  +M 
Sbjct: 253 NSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEME 312

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGK 243
            +G+ P E+T V ++ A +    L+ G      ++E    I   + +Y  +VD+  + G 
Sbjct: 313 GQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEEC-GIIPRIEHYGCMVDLLSRAGL 371

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           + +A + +    + + + V+W TL+  
Sbjct: 372 VKQAYEYIQNMPV-QPNAVIWRTLLGA 397



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           AY++F+ I   NV+ W ++I  YA + +   A   + +M  +  +PD  T+  LL A S 
Sbjct: 71  AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130

Query: 403 GGLVDEGYDFLSKKSR------VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
              V EG    S   R      V+     +  Y    D         ESA  +  +    
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGD--------TESAYKVFELMKER 182

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL-LANIYAKAGRLDDMSRIR 515
           D+  W+S++     +     A   F+ ++      DG  V+ L +  A+ G L+   R+ 
Sbjct: 183 DLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVH 242

Query: 516 MKLRDMGLKKQ 526
           + L  +GL K 
Sbjct: 243 VYLLKVGLSKN 253



 Score = 38.9 bits (89), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 20/172 (11%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           R+H +L+   L ++  ++  + +     G +  AQ++  +  E     W S+I    +NG
Sbjct: 240 RVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNG 299

Query: 119 YPQEVFAIY------------LYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVI-----SW 161
           + +E   ++            +  V      + CG L E  + F ++     I      +
Sbjct: 300 FGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHY 359

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
             M+   +  G+ ++    +  M    V P+ V   +L+ A T    L +G+
Sbjct: 360 GCMVDLLSRAGLVKQAYEYIQNM---PVQPNAVIWRTLLGACTIHGHLGLGE 408


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 196/544 (36%), Positives = 289/544 (53%), Gaps = 39/544 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG + E  ++F+ LP R+VISWN MI+ YT+     E L L  +M  +G  PD  T
Sbjct: 48  MYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYT 107

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMK--ISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
             S + A +       G  +H  L           ++   LVD+Y KC ++ EA+K+  R
Sbjct: 108 YSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDR 167

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
             I+E  V+ W+TL+ GY + +   EA  LF E+ E        ++S ++   A+F   +
Sbjct: 168 --IEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADF---A 222

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIEL-----------AYDLFSEISEKNVYLWTSVI 362
               G   H   + V     ++S+ N  L           A  LF E+ E+NV  WT +I
Sbjct: 223 LLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMI 282

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             Y   G   KA++LF EM+E G +PD VT++A+LSACSH GL+ EG  + S       I
Sbjct: 283 TGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKI 342

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           KPK++HY CMVDLLGR G L+E+ N I  MP+ P+V IW +LL  CR H +V++ +   +
Sbjct: 343 KPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGE 402

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L   +  N   +V+++N+YA AG   +  +IR  L+  GLKK+ G S +E    +H F 
Sbjct: 403 ILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFY 462

Query: 543 SGDIFNPHSEEIYLMLNEIEM-----------------TLQQQGLQETSLQHRERLAVAF 585
           +GD  +P  EEI+ +L E+E                   ++++   E+   H E+LA+  
Sbjct: 463 NGDGMHPLIEEIHEVLKEMEKRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAIGL 522

Query: 586 GLISTSEK----TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
            L+    K      IRI  NLR+CGDCH+F+K  S+V     V+RD  RFHRF+ G CSC
Sbjct: 523 VLVRRGLKLKGERVIRIFKNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSC 582

Query: 642 RDYW 645
            DYW
Sbjct: 583 GDYW 586



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 32/237 (13%)

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
           +K R L+ GK +H  +E+    +   + N ++DMY KCG +GEA ++     +   +V+ 
Sbjct: 15  SKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVR--NVIS 72

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
           W  +++GY      +EA  LF EM E+  +      S  L        K+C+   A   G
Sbjct: 73  WNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSL--------KACSCADAAGEG 124

Query: 324 IWVHV--------YIKKNQISIDNIEL---------AYDLFSEISEKNVYLWTSVIAAYA 366
           + +H         Y+ ++ ++   ++L         A  +F  I EK+V  W+++I  YA
Sbjct: 125 MQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYA 184

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
              + ++A+DLF E+ E+  + D     +++   +   L+++G     K+   Y IK
Sbjct: 185 QEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQG-----KQMHAYTIK 236


>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
 gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
          Length = 646

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 293/551 (53%), Gaps = 72/551 (13%)

Query: 148 QLFDKLPNRDV------ISWNTMISCYTSMGMYREGLGLLSKMG-AEGVSPDEVTMVSLI 200
           QL D+LP           ++N++IS     G+      L  +M  A GV  D VT+++L+
Sbjct: 115 QLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLALV 174

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV- 259
                +  L +   LH     S +  + S+ N LV +Y + G  G +   L R   +E+ 
Sbjct: 175 ----PVAPLGIVPQLHALAARSGLAANTSVANCLVSVYARGGGGGAS---LARQVFEEMP 227

Query: 260 ----DVVLWTTLVSGYVKSNERDEARRLFDEM-------VERNLISWTLMISGMLNQDAE 308
               D+V W  ++S + ++    EA  L+  M       VE + ++   ++S        
Sbjct: 228 RASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLS-------- 279

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISI-DNIEL----------------AYDLFSEIS 351
               SCA  GA   G+ V  Y++       DN+ L                A +LF E+ 
Sbjct: 280 ----SCAHTGARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMP 335

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           E++V  WT++I  Y M G    A+DLF  M    T PD V  + LLSACSH G+ DEG  
Sbjct: 336 ERSVVSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRK 395

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           + S   R Y ++PK++HY CMVDLLGRAG L+E+   I SMP+  D ++W +LL AC+ H
Sbjct: 396 YFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIH 455

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           +NV++ E AF+ +   +P N G +VL+ANIYA AG+LD ++++R  +R  GL+K+ G S 
Sbjct: 456 KNVEMGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSY 515

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ--------------- 576
           +E  G VH F + D  +P +  IY ++ E+E  ++++   +   +               
Sbjct: 516 VEHKGKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLV 575

Query: 577 --HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
             H E+LAVAFGL++T   + I ++ NLR+CGDCHSF+K  S++ NR  ++RD  RFHRF
Sbjct: 576 GFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRF 635

Query: 635 QGGQCSCRDYW 645
           + G CSCRDYW
Sbjct: 636 ENGACSCRDYW 646



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG L +  +LFD++P R V+SW T+I  Y   G     + L   M +E  +PD V MV 
Sbjct: 320 RCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVG 379

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           L+SA +     + G+     +E     +   L +Y  +VD+  + G++ EA++L+    +
Sbjct: 380 LLSACSHAGMYDEGRKYFSTMERDYC-LRPKLEHYTCMVDLLGRAGRLDEARELIASMPM 438

Query: 257 DEVDVVLWTTLV 268
              D  +W  L+
Sbjct: 439 -AADGAVWGALL 449


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 188/550 (34%), Positives = 303/550 (55%), Gaps = 44/550 (8%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L+T  +L+N   KCG +    Q+FD++P+R ++SWNTMI   T  G   E L LL +M  
Sbjct: 99  LLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQR 158

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           EG    E T+ S++ A      L   + LH F  ++ M ++  +   L+D+Y KCG + +
Sbjct: 159 EGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKD 218

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A  +     + +  VV W+++ +GYV++   ++A  LF +  E  L     ++S ++   
Sbjct: 219 AVCVF--ESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVIC-- 274

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEIS 351
                 +CA + A+  G  V+  + K+            ID       IE +Y +F ++ 
Sbjct: 275 ------ACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           ++NV LW ++I+  +    + + + LF +M++ G  P+ VTF+++LSAC H GLV +G  
Sbjct: 329 KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQK 388

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           +    ++ +++ P + HY CMVD L RAG + E+ + I+ +P     S+W SLL +CR H
Sbjct: 389 YFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTH 448

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
            N++LAE A K L + +P N G ++LL+N+YA  G+ D+++++R  L++  +KK+ G S 
Sbjct: 449 GNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSW 508

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL 575
           IE    VH F  G+  +P   EIY  LNE+   LQ+ G                 QE   
Sbjct: 509 IEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLR 568

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LA   GL+       IRI+ NLRICGDCHSFMK+ S+ + R++++RD  RFH F+
Sbjct: 569 HHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFK 628

Query: 636 GGQCSCRDYW 645
            G CSC D+W
Sbjct: 629 NGCCSCGDFW 638



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 122/285 (42%), Gaps = 37/285 (12%)

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A+ KL  L  GK  H  +    +K      N L++MY KCG +  A+++    E+   
Sbjct: 73  LCAKRKL--LLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD--EMPSR 128

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
            +V W T++    ++ E +EA  L  +M           IS +L         +CA+  A
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLC--------ACAAKCA 180

Query: 320 LYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNVYLWTSVIA 363
           L     +H +  K  + + N+ +A  L                F  + +++V  W+S+ A
Sbjct: 181 LSECQLLHAFAIKAAMDL-NVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAA 239

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD---FLSKKSRVY 420
            Y      ++A+ LF +  ETG K DQ    +++ AC+    + EG      LSK     
Sbjct: 240 GYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCS 299

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           NI         ++D+  + G +EES      +    +V +W++++
Sbjct: 300 NIFVASS----LIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMI 339


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/642 (30%), Positives = 326/642 (50%), Gaps = 66/642 (10%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P +  +  V R C+ + + E   RIH  ++ + +  D  +   V +     GD G A++ 
Sbjct: 124 PNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRA 183

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
                + +   WN +I   L +G                        L    QLFD+   
Sbjct: 184 FGAMAQKDATSWNIVIRACLQDG-----------------------DLVGATQLFDESSL 220

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RDV SWNT++S     G   E LG L +M   GV+    T   + +    L   ++G+ L
Sbjct: 221 RDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQL 280

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY-EIDEVDVVLWTTLVSGYVKS 274
           H  +  + ++    +   L+DMY KCG++  A  +  R+ +  E     W+T+V+GYV++
Sbjct: 281 HGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQN 340

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
              +EA   F  M+   + +   +++ + +        +CA+ G +  G  VH +++K  
Sbjct: 341 GREEEALEFFRRMLREGVPAGQFILTSVAS--------ACANAGMVEQGRQVHGFVEKLG 392

Query: 335 ISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
              D               ++E A  +F     KNV LWT+++ +YA  G  + A+++F 
Sbjct: 393 HRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFS 452

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
            M+     P+++T +A+LSACSH GLV +GY + +     Y I P  +HY CMVDL GRA
Sbjct: 453 RMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRA 512

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499
           G L+++ NFI    I  +  +W +LL ACR H++++ A+ A + L + +  + G++VL++
Sbjct: 513 GLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMS 572

Query: 500 NIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN 559
           N+YA   +  D  ++R  +++  ++KQ G S I     VH+F + D  +P S EIY  L 
Sbjct: 573 NMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLE 632

Query: 560 EIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLR 603
           ++   L++ G                +ETSL+ H E+LA+AFG+IST   T +RI  NLR
Sbjct: 633 KLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLR 692

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +C DCH  +K  ++  +REIV+RD  RFH F+ GQCSC D+W
Sbjct: 693 VCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 169/386 (43%), Gaps = 59/386 (15%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE--GVSPDEVTMVSLISARTK 205
           ++FD  P R + +W ++IS     G + +G+   ++M  E    +P+   +  ++     
Sbjct: 79  RVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAG 138

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           L D+E G+ +H ++  S +     L N ++DMY KCG  G A++  G   + + D   W 
Sbjct: 139 LGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFG--AMAQKDATSWN 196

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD------------------- 306
            ++   ++  +   A +LFDE   R++ SW  ++SG++                      
Sbjct: 197 IVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTF 256

Query: 307 AEFKYK---------SCASIGALYHGIWVHVYIKKNQI----------SIDNIELA---Y 344
           + + Y          S   +G   HG  V   ++++                +E A   +
Sbjct: 257 SNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIF 316

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
           D +S+ +E   + W++++A Y   G  ++A++ F  M   G    Q    ++ SAC++ G
Sbjct: 317 DRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAG 376

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQH------YGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           +V++G        +V+    K+ H         +VD+  ++G LE++     S     +V
Sbjct: 377 MVEQG-------RQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQT-KNV 428

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHL 484
           ++W+++L +   H   ++A   F  +
Sbjct: 429 ALWTTMLCSYASHGQGRMALEIFSRM 454


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 181/458 (39%), Positives = 254/458 (55%), Gaps = 56/458 (12%)

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           G +  AQ+L     + E  +V  T +++ Y K  E D AR LFD M ER+ + W +MI G
Sbjct: 107 GDVVSAQQLFD--TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDG 164

Query: 302 ----------------MLNQDAEFK-------YKSCASIGALYHGIWVHVYIKKNQISID 338
                           ML   A+           +C  +GAL  G WVH YI+ N I  +
Sbjct: 165 YTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFN 224

Query: 339 ---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                          ++E A  +F +I +K+V  W S+I  YAM G +Q+A+ LF  M  
Sbjct: 225 VHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCR 284

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            G  P  +TFI +LSAC H G V EG+D  +K    Y I+PK++HYGCMV+LLGRAGH+E
Sbjct: 285 MGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVE 344

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           ++   + +M I PD  +W +LL ACR H  + L E   + L + +  N G ++LL+NIYA
Sbjct: 345 QAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYA 404

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
             G  D ++R+R  ++D G+KK+ G S IE    VH+F +G + +P  +EIY+ML EI  
Sbjct: 405 AVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEING 464

Query: 564 TLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
            L+  G                +E SL+ H E+LA+AFGLI+T   TTI+IV NLR+C D
Sbjct: 465 WLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCAD 524

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CH   K+ S++  R+IV+RD  RFH F  G CSC DYW
Sbjct: 525 CHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 209/645 (32%), Positives = 329/645 (51%), Gaps = 103/645 (15%)

Query: 24  LVPKM-RISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF 82
           LVP + RIS+     C      I   R+C S+D+ ++I S +    L  D     ++  F
Sbjct: 131 LVPVLLRISKLTKKSC------IECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAF 184

Query: 83  LVFT--GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------V 131
              +  G+L YA++I     +P + ++N +++     G  ++V  ++  L          
Sbjct: 185 CADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGF 244

Query: 132 TRTVLLNKCGKLKEVCQ--------------------------------------LFDKL 153
           T   +L   G L++V Q                                      LFD++
Sbjct: 245 TYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEM 304

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMG 212
             RD +SWN MIS Y     + + +    +M  EG   PDE T+VS +SA T L++LE+G
Sbjct: 305 TTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELG 364

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
             +H ++ +  +  +  + N L+DMY KCG +  A+ +    E+   +V+ WT+++SGY+
Sbjct: 365 DEIHNYVRKE-LGFTTRIDNALLDMYAKCGCLNIARNIFD--EMSMKNVICWTSMISGYI 421

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYK---------------- 312
              +  EAR LFD+   R+++ WT MI+G +      DA   ++                
Sbjct: 422 NCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVT 481

Query: 313 ---SCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKN 354
               CA +GAL  G W+H Y+ +N+I++D                ++ + ++F E+ +K+
Sbjct: 482 LLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKD 541

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              WTS+I   AM G   +A+ LF EME  G KPD +TFI +LSACSHGGLV+EG  F +
Sbjct: 542 TASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFN 601

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD---VSIWSSLLRACRCH 471
              +V+ I+PK++HYGC++DLLGRAG L+E+   I  +PI      V ++ +LL ACR H
Sbjct: 602 SMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIH 661

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
            NV + E   K L   +  +   H LLANIYA   R +D  ++R K++++G+KK  G SL
Sbjct: 662 NNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSL 721

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ 576
           IE  G VH+F  GD  +P   EI  MLN +  T Q  GL+E+ ++
Sbjct: 722 IEVDGIVHEFLVGDPSHPEMMEICSMLNRV--TGQLLGLKESQVE 764


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 293/537 (54%), Gaps = 39/537 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++    +FD +P R+ +SWN MI  Y   G   E + L  +M  EGV   + ++++
Sbjct: 166 KCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLA 225

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A  +L  L+  + +H  L    +  + S+ N L+  Y KC +   A ++      ++
Sbjct: 226 ALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELG-NK 284

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
              + W  ++ G+ ++   ++A RLF  M   N+   +  +  ++         + A I 
Sbjct: 285 KTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVI--------PAVADIS 336

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
                 W+H Y  ++Q+  D                + +A  LF    +++V  W ++I 
Sbjct: 337 DPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIH 396

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y   G  Q A++LF EM+ TG+ P++ TF+++L+ACSH GLVDEG  + +   + Y ++
Sbjct: 397 GYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLE 456

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P M+HYG MVDLLGRAG L+E+ +FI +MPI P +S++ ++L AC+ H+NV+LAE + + 
Sbjct: 457 PGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQI 516

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E  P     HVLLANIYA A    D++R+R  +   GL+K  G+S+I+    VH F S
Sbjct: 517 IFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYS 576

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL-----------QETSLQ----HRERLAVAFGLI 588
           G   + H+++IY  L ++   ++  G             +   Q    H E+LA+A+GLI
Sbjct: 577 GSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLI 636

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            T+  TTI+I  NLR+C DCH+  K+ S +  REI++RD  RFH F+ G+CSC DYW
Sbjct: 637 RTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 132/295 (44%), Gaps = 37/295 (12%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           +  T L N   KC +  +  ++FD++P+RD ++WN +++ Y   G+    +  + +M  E
Sbjct: 52  IASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGE 111

Query: 188 --GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
             G  PD VT+VS++ A    R L   + +H F   + +    ++   ++D Y KCG + 
Sbjct: 112 EGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVE 171

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
            A+ +     +   + V W  ++ GY  +    EA  LF          W ++  G+   
Sbjct: 172 AARAVFDCMPVR--NSVSWNAMIDGYADNGNATEAMALF----------WRMVQEGVDVT 219

Query: 306 DAEF--KYKSCASIGAL-----YHGIWVHVYIKKNQISIDN-----------IELAYDLF 347
           DA      ++C  +G L      H + V V +  N +S+ N            +LA  +F
Sbjct: 220 DASVLAALQACGELGYLDEVRRVHELLVRVGLSSN-VSVTNALITTYAKCKRADLAAQVF 278

Query: 348 SEISEKNVYL-WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           +E+  K   + W ++I  +      + A  LF  M+    +PD  T ++++ A +
Sbjct: 279 NELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVA 333



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 34/234 (14%)

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
             ++ L +AR    DL  G+ +H  LE   +         L +MYFKC +  +A+++  R
Sbjct: 20  TALLKLCAARA---DLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDR 76

Query: 254 YEIDEVDVVLWTTLVSGYVK----SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
             +   D V W  +V+GY +    S+  +   R+  E       S TL+           
Sbjct: 77  --MPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSV--------- 125

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKN 354
              +CA   AL+    VH +  +  +                   +E A  +F  +  +N
Sbjct: 126 -LPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRN 184

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
              W ++I  YA  G+A +A+ LF  M + G      + +A L AC   G +DE
Sbjct: 185 SVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE 238



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 11/163 (6%)

Query: 102 PEIKIWNSIIENQLINGYP-QEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVI 159
           P +   +  ++ + I+GY  +      +Y++T  + + +KCG++    +LFD   +R VI
Sbjct: 330 PAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVI 389

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           +WN MI  Y S G  +  + L  +M   G  P+E T +S+++A +    ++ G+     +
Sbjct: 390 TWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASM 449

Query: 220 E-----ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +     E  M+  G+    +VD+  + GK+ EA   +    I+
Sbjct: 450 KKDYGLEPGMEHYGT----MVDLLGRAGKLDEAWSFIKNMPIE 488


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 188/532 (35%), Positives = 275/532 (51%), Gaps = 31/532 (5%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG  +    +F  + ++ V+SWNTMI      G   E      KM  EG  P  VTM+ 
Sbjct: 293 KCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMG 352

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A   L DLE G  +H  L++  +  + S++N L+ MY KC ++  A  +    E   
Sbjct: 353 VLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN 412

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
           V    W  ++ GY ++    EA  LF  M  + +      + G++   A+F     A   
Sbjct: 413 VT---WNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAK-- 467

Query: 319 ALYHGIWVHVYIKKNQI----------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
              HG+ V   +  N                I+ A  LF  + E++V  W ++I  Y   
Sbjct: 468 -WIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTH 526

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G  ++ +DLF EM++   KP+ +TF++++SACSH G V+EG          Y ++P M H
Sbjct: 527 GVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDH 586

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           Y  MVDLLGRAG L+++ NFI  MPI P +S+  ++L AC+ H+NV+L E A + L + D
Sbjct: 587 YSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLD 646

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           P   G HVLLANIYA     D ++++R  + D GL K  G S +E    +H F SG   +
Sbjct: 647 PDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNH 706

Query: 549 PHSEEIYLMLNEIEMTLQQQGL---------------QETSLQHRERLAVAFGLISTSEK 593
           P S++IY  L  +   ++  G                ++    H ERLA+AFGL++TS  
Sbjct: 707 PESKKIYAFLETLGDEIKAAGYVPDPDSIHDVEEDVKKQLLSSHSERLAIAFGLLNTSPG 766

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           TT+ I  NLR+CGDCH   K  S V  REI++RD  RFH F+ G CSC DYW
Sbjct: 767 TTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 221/481 (45%), Gaps = 69/481 (14%)

Query: 81  EFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKC 140
           E  +  GD  YA  +   G+  ++K    I    + NG+   +F     +     L  KC
Sbjct: 140 EVRLVVGD--YACLLQLCGENLDLKKGREIHGLIITNGFESNLFV----MTAVMSLYAKC 193

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
            ++    ++F+++ ++D++SW T+++ Y   G  +  L L+ +M   G  PD VT+VS++
Sbjct: 194 RQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSIL 253

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A   ++ L +G+++H +   S  +   ++ N L+DMYFKCG    A+ +     +    
Sbjct: 254 PAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFK--GMRSKT 311

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           VV W T++ G  ++ E +EA   F +M++   +   + + G+L         +CA++G L
Sbjct: 312 VVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVL--------LACANLGDL 363

Query: 321 YHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAY 365
             G +VH  + K    + +S+ N           +++A  +F+ + + NV  W ++I  Y
Sbjct: 364 ERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNV-TWNAMILGY 422

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYD--- 411
           A  G  ++A++LF  M+  G K D  T + +++A +           HG  V    D   
Sbjct: 423 AQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNV 482

Query: 412 FLSKK-----SRVYNIKPK------MQH-----YGCMVDLLGRAGHLEESANFITSM--- 452
           F+S       ++   IK        MQ      +  M+D  G  G  +E+ +    M   
Sbjct: 483 FVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKG 542

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET---DPLNDGAHVLLANIYAKAGRLD 509
            + P+   + S++ AC     V+     FK + E    +P  D  +  + ++  +AG+LD
Sbjct: 543 AVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMD-HYSAMVDLLGRAGQLD 601

Query: 510 D 510
           D
Sbjct: 602 D 602


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/531 (37%), Positives = 281/531 (52%), Gaps = 77/531 (14%)

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH----LFLEESTMKISGSLLNYLVDMY 238
           +M    VSPD  T   L+ +      L +G+  H    LF  +    +  SLLN    MY
Sbjct: 51  RMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLN----MY 106

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
             CG +  A ++    E    D+  W ++V+ Y K+   + AR+LFDEM ERN+ISW+ +
Sbjct: 107 SSCGDLSSALRIFD--ESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCL 164

Query: 299 ISGMLNQDAEFKYK-------------------------------SCASIGALYHGIWVH 327
           I+G +      KYK                               +C  +GAL  G WVH
Sbjct: 165 INGYVMCG---KYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVH 221

Query: 328 VYIKKNQISID---------------NIELAYDLFSEI-SEKNVYLWTSVIAAYAMAGHA 371
            YI K  + ID               ++E A  +F  + S+K+V  ++++I   AM G  
Sbjct: 222 SYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLT 281

Query: 372 QKAIDLFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
            +   +F EM  +    P+ VTF+ +L AC H GL+++G  +    +  + I P +QHYG
Sbjct: 282 DECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYG 341

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           CMVDL GR+G ++E+ +FI SMP+ PDV IW SLL   R   ++K  E A K L E DP+
Sbjct: 342 CMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPM 401

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
           N GA+VLL+N+YAK GR  ++ RIR ++   G+KK  G S +E  G VH+F  GD     
Sbjct: 402 NSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQE 461

Query: 551 SEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKT 594
           SE IY ML EI   L++ G                +E +L  H E+LA+AF L+ T   T
Sbjct: 462 SERIYAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGT 521

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +RI+ NLRICGDCH  MK+ S++++REIV+RD  RFH F  G CSCRD+W
Sbjct: 522 PVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 29/242 (11%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           +R H+ ++   L +DP + T +       GDL  A +I  +    ++  WNS++     N
Sbjct: 81  QRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVV-----N 135

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
            Y                   K G +    +LFD++P R+VISW+ +I+ Y   G Y+E 
Sbjct: 136 AYA------------------KAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEA 177

Query: 178 LGLLSKMGAEG-----VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
           L L  +M         VSP++ TM +++SA  +L  LE GK +H ++++  ++I   L  
Sbjct: 178 LDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGT 237

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            L+DMY KCG +  A+++       + DV  ++ ++         DE  ++F EM   N 
Sbjct: 238 ALIDMYAKCGSLERAKRVFDALG-SKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNN 296

Query: 293 IS 294
           I+
Sbjct: 297 IN 298


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 302/564 (53%), Gaps = 72/564 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L +   LFD++P  D +S+NT++SC+ + G       L + M       D V+  +++
Sbjct: 63  GRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR----DVVSWNTMV 118

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           S  +K   +E  K + L      M +  S+    +   F C +   A +   R   ++ D
Sbjct: 119 SGLSKSGAVEEAKAVFL-----AMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGD 173

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKYKS--- 313
            VLWT +VSGY+      +A   F+ M  RNL+SW  +++G +      DA   +++   
Sbjct: 174 AVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVR 233

Query: 314 -----------------CASIGALYHGIWVHVYIKKNQISID---------------NIE 341
                            C+++ AL  G  +H +  K  +S +               ++ 
Sbjct: 234 EANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLS 293

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  LF E+  ++V  W ++I+ YA  G  ++AI+LF  M++ G +P+ +TF+A+L+AC 
Sbjct: 294 SACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACI 353

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GL D G         +Y I+P++ HY CMVDLL RAG LE + + I SMP  P  S +
Sbjct: 354 HTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAY 413

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            +LL ACR ++N++ AE A   L E DP + GA+V LANIYA A + DD+SR+R  ++D 
Sbjct: 414 GTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDN 473

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNP--------------------HSEEIYLMLNEI 561
            + K  GYS IE  G +H+F S D  +P                    +  ++  +L+++
Sbjct: 474 AVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDV 533

Query: 562 EMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
           + TL+ Q L    ++H E+LA++FGLIST+   T+RI  NLR+CGDCH+  KV S++ +R
Sbjct: 534 DETLKVQML----MRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDR 589

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           EI++RD  RFH F+GG CSC DYW
Sbjct: 590 EIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L   C+LF ++  RDV++WN MIS Y   G  +E + L  +M  EGV P+ +T V+
Sbjct: 288 KCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVA 347

Query: 199 LISA 202
           +++A
Sbjct: 348 VLTA 351


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 293/537 (54%), Gaps = 40/537 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +    ++FD + +R+ +SWN MI  Y   G   E L L  +M  EGV   +V++++
Sbjct: 374 KCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLA 433

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A  +L  L+ G+ +H  L    ++ + +++N L+ MY KC +   A ++    E+  
Sbjct: 434 ALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFD--ELGY 491

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
              V W  ++ G  ++   ++A RLF  M   N+   +  +  ++         + A I 
Sbjct: 492 KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSII--------PALADIS 543

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
                 W+H Y  +  +  D                + +A  LF+   +++V  W ++I 
Sbjct: 544 DPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIH 603

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y   G  + A++LF EM+ +G  P++ TF+++LSACSH GLVDEG ++ S     Y ++
Sbjct: 604 GYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLE 663

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P M+HYG MVDLLGRAG L E+ +FI  MP+ P +S++ ++L AC+ H+NV+LAE + + 
Sbjct: 664 PGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQR 723

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E +P     HVLLANIYA A    D++R+R  +   GL+K  G+S+++    +H F S
Sbjct: 724 IFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYS 783

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL-----------QETSLQ----HRERLAVAFGLI 588
           G   +  +++IY  L ++   ++  G             +   Q    H E+LA+A+GLI
Sbjct: 784 GSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLI 843

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            T+  TTI+I  NLR+C DCH+  K+ S V  REI++RD  RFH F+ G+CSC DYW
Sbjct: 844 RTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 179/401 (44%), Gaps = 40/401 (9%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GV 189
           T L N   KC +  +  ++FD++P RD ++WN +++ Y   G+    +G++ +M  E G 
Sbjct: 264 TALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGE 323

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            PD VT+VS++ A    + L   + +H F          ++   ++D+Y KCG +  A+K
Sbjct: 324 RPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARK 383

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           +     + + + V W  ++ GY ++ +  EA  LF  MV   +    + +   L+     
Sbjct: 384 VFD--GMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALH----- 436

Query: 310 KYKSCASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEISEKN 354
              +C  +G L  G  VH  + +    + +++ N            +LA  +F E+  K 
Sbjct: 437 ---ACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKT 493

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              W ++I      G ++ A+ LF  M+    KPD  T ++++ A     L D      +
Sbjct: 494 RVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPA-----LADISDPLQA 548

Query: 415 KKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
           +    Y+I+  +         ++D+  + G +  + +   S      V  W++++     
Sbjct: 549 RWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSAR-DRHVITWNAMIHGYGS 607

Query: 471 HQNVKLAEHAFKHLTETDPL-NDGAHVLLANIYAKAGRLDD 510
           H + K+A   F+ +  +  + N+   + + +  + AG +D+
Sbjct: 608 HGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDE 648



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 11/244 (4%)

Query: 175 REGLGLLSKMG-AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY 233
           R  L   + M  A G  P   T  SL+       DL  G+ +H  L    +         
Sbjct: 206 RGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATA 265

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN-- 291
           L +MY KC + G+A+++  R  +   D V W  LV+GY ++   + A  +   M E +  
Sbjct: 266 LANMYAKCRRPGDARRVFDR--MPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGE 323

Query: 292 ------LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345
                 L+S     +      A  +  + A  G     + V   I         ++ A  
Sbjct: 324 RPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARK 383

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  + ++N   W ++I  YA  G A +A+ LF  M   G     V+ +A L AC   G 
Sbjct: 384 VFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGF 443

Query: 406 VDEG 409
           +DEG
Sbjct: 444 LDEG 447


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 208/690 (30%), Positives = 346/690 (50%), Gaps = 86/690 (12%)

Query: 39  PVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P S+ V+   ++C+   +++E ++IH   +  +++    + +   +  +    +G  + +
Sbjct: 270 PNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNM 329

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV------------LLNKCGKL 143
           +  G +P+      I+      G  Q+   ++ Y+V                L +KCG L
Sbjct: 330 LSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSL 389

Query: 144 KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGV-SPDEVTMVSLI 200
            +  +LF  +  RDV+ W++MI+ Y   G   E L +  +M    +G+ S  +++M   +
Sbjct: 390 GDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQV 449

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY----FKCGKIGEAQ-------- 248
                +    +  ++   ++   M+     L +  +++    F+   + ++         
Sbjct: 450 QPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQY 509

Query: 249 --KLLGRY--------EIDEVDVV----------LWTTLVSGYVKSNERDEARRLFDEMV 288
             ++L ++         ID   +V          LW  ++ G+        +  L+ +M+
Sbjct: 510 DSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMM 569

Query: 289 ERNLISWTLMISGMLNQDAEF--KYKSCASIGALYHGIWVHVYIKKNQISID-------- 338
           E+ L       SG++           +C ++GAL  G W H Y+ +     D        
Sbjct: 570 EKGLKPDN---SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIM 626

Query: 339 -------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                  +++LA  LF E + K++  W+++IA+Y + GH +KAIDLF +M + G +P  V
Sbjct: 627 DMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHV 686

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           TF  +LSACSH GL++EG  +    +  + I  K+ +Y CMVDLLGRAG L E+ + I +
Sbjct: 687 TFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIEN 746

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           MP+ PD SIW SLL ACR H N+ LAE    HL   DP++ G HVLL+NIYA   R +++
Sbjct: 747 MPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEV 806

Query: 512 SRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL- 570
            ++R  +   G  K  G+SL+E    VHKF  GD  +P  E++Y  L E+   ++  G  
Sbjct: 807 EKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYV 866

Query: 571 --------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
                         +E +L  H ERLA+AFGLI+TS  TT+RI  NLRICGDCH+ +K+ 
Sbjct: 867 PLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLI 926

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S++ NR I++RD  RFHRF+ G CSC DYW
Sbjct: 927 SKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 145/278 (52%), Gaps = 35/278 (12%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEV 194
           L  KC  L+   ++FD+ P+ +V  WN+ +  Y     + E L L   M    G +PD  
Sbjct: 45  LYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNF 104

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLG 252
           T+   + A   LR LE+GK +H F +++  +I   +   + LV++Y KCG++GEA K+  
Sbjct: 105 TIPIALKACAGLRMLELGKVIHGFAKKND-EIGSDMFVGSALVELYSKCGQMGEALKVFE 163

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL-MISGMLNQDAEFKY 311
            ++    D VLWT++V+GY ++N+ +EA  LF +MV  +     L +++ +LN  A+   
Sbjct: 164 EFQ--RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAK--- 218

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
             C  I A                         +LFS++ EK+V  W+++IA YA    A
Sbjct: 219 TGCEKIAA-------------------------NLFSKMPEKDVISWSTMIACYANNEAA 253

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
            +A++LF EM E   +P+ VT ++ L AC+    ++EG
Sbjct: 254 NEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEG 291



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 190/455 (41%), Gaps = 81/455 (17%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           ++C++     ++HS +  T ++ D   +T++         L  A+++  +   P + +WN
Sbjct: 12  QACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWN 71

Query: 109 SIIENQLINGYPQEVFAIYLYLV----------TRTVLLNKCGKLK-----EVCQLFDKL 153
           S + +       +E   ++  ++          T  + L  C  L+     +V   F K 
Sbjct: 72  STLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKK 131

Query: 154 PNR---DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
            +    D+   + ++  Y+  G   E L    K+  E   PD V   S+++   +  D E
Sbjct: 132 NDEIGSDMFVGSALVELYSKCGQMGEAL----KVFEEFQRPDTVLWTSMVTGYQQNNDPE 187

Query: 211 MGKNLHLFLEESTMKISGS---LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
             + L LF +   M        L+N L+++Y K G    A  L  +  + E DV+ W+T+
Sbjct: 188 --EALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSK--MPEKDVISWSTM 243

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++ Y  +   +EA  LF EM+E+     ++ +   L        ++CA    L  G  +H
Sbjct: 244 IACYANNEAANEALNLFHEMIEKRFEPNSVTVVSAL--------QACAVSRNLEEGKKIH 295

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
                 +I++               K+V  W ++++ YA  G A K++ +F  M   G +
Sbjct: 296 ------KIAV--------------WKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQ 335

Query: 388 PDQVTFIALLSA-----------CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           PD V  + +L+A           C HG +V  G++     S V+           +++L 
Sbjct: 336 PDAVAVVKILAASSELGIFQQALCLHGYVVRSGFN-----SNVFV-------GASLIELY 383

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            + G L ++      M I  DV IWSS++ A   H
Sbjct: 384 SKCGSLGDAVKLFKGM-IVRDVVIWSSMIAAYGIH 417



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 111/264 (42%), Gaps = 31/264 (11%)

Query: 18  KLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQ 74
           K++  GL P        + V P  + ++ V  +C ++      E  HS++I T    D  
Sbjct: 567 KMMEKGLKPDN------SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDIL 620

Query: 75  ISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---- 130
           ++T + +     G L  A+ +  +    ++  W+++I +  I+G+ ++   ++  +    
Sbjct: 621 VATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAG 680

Query: 131 -----VTRTVLLNKC---GKLKEVCQLFDKLPNRDVIS-----WNTMISCYTSMGMYREG 177
                VT T +L+ C   G L+E    F  +    VI+     +  M+      G   E 
Sbjct: 681 VRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEA 740

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL--HLFLEESTMKISGSLLNYLV 235
           + L+  M  E   PD     SL+ A     +L++ + +  HLF  +        LL+ + 
Sbjct: 741 VDLIENMPVE---PDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIY 797

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEV 259
               +  ++ + +K++ R   +++
Sbjct: 798 AAKSRWNEVEKVRKMMARRGANKI 821


>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
 gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 295/561 (52%), Gaps = 72/561 (12%)

Query: 138 NKCGKLKEVCQLFDKLPNRDV------ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           ++ G L    QL D++P           ++N++IS      +      L  +M A  V  
Sbjct: 99  SRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGCALHALPVASFALFRRMRAAAVGF 158

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D VT+++L+ A      L +   +H       +    S+ N L+  Y + G  G A   L
Sbjct: 159 DAVTLLALVPATP----LSVVPQVHALAARVGLATETSVANCLMSTYARGGAFGAA---L 211

Query: 252 GRYEIDEV-----DVVLWTTLVSGYVKSNERDEARRLFDEM-------VERNLISWTLMI 299
            R   DE+     D+V W  ++S + ++    +A  L+  M       VE + ++    I
Sbjct: 212 ARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVT----I 267

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI-DNIEL---------------- 342
            G+L+        S A +GA   G  V  Y+++       N++L                
Sbjct: 268 VGVLS--------SAAHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLPR 319

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  LF E+  K++  WT++I  + M G+   A+ LF  M   G +PD V  +AL SACSH
Sbjct: 320 AQQLFDEMPRKSIVSWTALITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSH 379

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GL DEG  + S    VY ++P ++HY CMVDLLGRAG LEE+   I+SMP+P D ++W 
Sbjct: 380 AGLYDEGRRYFSAMESVYKLRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVWG 439

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL AC+ H+NV + E AF  + E +P N G +VL++NIY   G+LD ++R+R  +R+ G
Sbjct: 440 ALLGACKIHKNVDVGEEAFTRVIELEPKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERG 499

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ-GLQETSLQ----- 576
           LKK+ G S +E  G VH F + D  +P +  IY ++  +E+ ++++ G++E+ +      
Sbjct: 500 LKKEPGCSYVEHKGRVHLFMADDHSHPQARRIYELVIRLELMVKEKSGMRESEVAAAKGR 559

Query: 577 ------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                       H E+LAVAFGL++T   + I ++ NLR+CGDCHSF+KV S   NR  +
Sbjct: 560 MEKAAAQPLVGIHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKVVSATTNRAFL 619

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD  RFHRF GG CSC+DYW
Sbjct: 620 VRDASRFHRFDGGVCSCKDYW 640


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/538 (34%), Positives = 296/538 (55%), Gaps = 41/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G + +  Q+F+++P  DVI W+ MI+ Y       E + +  +M    V P++ T+ S
Sbjct: 293 KSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLAS 352

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ A   L DL++G  +H  + +  + ++  + N L+DMY KCG++  + +L    E   
Sbjct: 353 LLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFS--ESPN 410

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
              V W T++ GYV++   ++A  LF +M+E  +    +  S +L        ++CA I 
Sbjct: 411 CTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVL--------RACAGIA 462

Query: 319 ALYHGIWVH------VYIKKNQIS---ID------NIELAYDLFSEISEKNVYLWTSVIA 363
           AL  G  +H      +Y K   +    ID      NI+ A  +F  + E +   W ++I+
Sbjct: 463 ALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMIS 522

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y++ G   +A+  F  M ET  KPD+VTF+ +LSACS+ GL+D G  +       Y+I+
Sbjct: 523 GYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIE 582

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P  +HY CMV LLGR+GHL+++A  +  +P  P V +W +LL AC  H +V+L   + + 
Sbjct: 583 PCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQR 642

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E +P ++  HVLL+NIYA A R  +++ IR  ++  G++K+ G S IE  G VH F+ 
Sbjct: 643 VLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSV 702

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGL 587
           GD  +P ++ I  ML  + M  + +G                 ++    H ERLA+A+GL
Sbjct: 703 GDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGL 762

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I T   + +RI+ NLRIC DCH+ +K+ S++  R+I+IRD  RFH F  G CSC DYW
Sbjct: 763 IRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 180/393 (45%), Gaps = 42/393 (10%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG  +   Q+FD +  +D++SW  M++CY     + E L L S+M   G  P+  T  S+
Sbjct: 193 CGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASV 252

Query: 200 ISARTKLRDLEMGKNLH------LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           + A   L    +GK +H       +LEE  + +       L+D+Y K G + +A ++   
Sbjct: 253 LKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE------LIDLYIKSGDVDDALQVFE- 305

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            E+ + DV+ W+ +++ Y +S + +EA  +F  M    ++     ++ +L        ++
Sbjct: 306 -EMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLL--------QA 356

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           CAS+  L  G  +H ++ K  + ++                +E +  LFSE        W
Sbjct: 357 CASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSW 416

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            +VI  Y  AG+ +KA+ LF +M E   +  +VT+ ++L AC+    ++ G    S    
Sbjct: 417 NTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLS-- 474

Query: 419 VYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
           V  I  K    G  ++D+  + G++++ A  +  M    D   W++++     H     A
Sbjct: 475 VKTIYDKNTVVGNALIDMYAKCGNIKD-ARLVFDMLREHDQVSWNAMISGYSVHGLYGEA 533

Query: 478 EHAFKHLTETDPLNDG-AHVLLANIYAKAGRLD 509
              F+ + ET+   D    V + +  + AG LD
Sbjct: 534 LKTFESMLETECKPDKVTFVGILSACSNAGLLD 566



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 190/437 (43%), Gaps = 55/437 (12%)

Query: 64  LITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEV 123
           L+ + L++ P          + T     AQ+      E    I+ S++++ + NG     
Sbjct: 4   LLRSKLLQHPNHCKSNTALCIITQRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNG--DCA 61

Query: 124 FAIYLY-----------LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
              YL+           L    +LLN   K   L +  +LFD++P+R+ +S+ T+I  Y+
Sbjct: 62  TGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYS 121

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
               + E +GL S++  EG   +     +++         ++G ++H  + +        
Sbjct: 122 QCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAF 181

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           +   L+D Y  CG    A+++     I+  D+V WT +V+ YV++   +E+ +LF  M  
Sbjct: 182 VGTALIDCYSVCGYAECARQVFD--AIEYKDMVSWTGMVACYVENECFEESLKLFSRM-- 237

Query: 290 RNLISWTLMISGMLNQDAEFK--YKSCA-----SIGALYHG----------IWVHVYIKK 332
                    I G    +  F    K+C      ++G   HG          ++V V +  
Sbjct: 238 --------RIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELID 289

Query: 333 NQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
             I   +++ A  +F E+ + +V  W+ +IA YA +  +++AI++F  M      P+Q T
Sbjct: 290 LYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFT 349

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANF 448
             +LL AC+   LVD     L  +   + +K  +         ++D+  + G +E S   
Sbjct: 350 LASLLQACA--SLVDLQ---LGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQL 404

Query: 449 ITSMPIPPDVSIWSSLL 465
            +  P   DVS W++++
Sbjct: 405 FSESPNCTDVS-WNTVI 420



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 176/454 (38%), Gaps = 85/454 (18%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQ 78
           L L  +MRI        P +     V ++C  ++ F   + +H     T+ + +  +  +
Sbjct: 231 LKLFSRMRI----VGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE 286

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN 138
           + +  + +GD+  A Q+  +  + ++  W+ +I     +   +E   ++  +    VL N
Sbjct: 287 LIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPN 346

Query: 139 -----------------------------------------------KCGKLKEVCQLFD 151
                                                          KCG+++   QLF 
Sbjct: 347 QFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFS 406

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           + PN   +SWNT+I  Y   G   + L L   M    V   EVT  S++ A   +  LE 
Sbjct: 407 ESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEP 466

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           G  +H    ++    +  + N L+DMY KCG I +A+ +     + E D V W  ++SGY
Sbjct: 467 GSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDM--LREHDQVSWNAMISGY 524

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
                  EA + F+ M+E       +   G+L+        +C++ G L  G        
Sbjct: 525 SVHGLYGEALKTFESMLETECKPDKVTFVGILS--------ACSNAGLLDRG-------- 568

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
             Q    ++   YD+     E     +T ++     +GH  KA  L   + E   +P  +
Sbjct: 569 --QAYFKSMVEEYDI-----EPCAEHYTCMVWLLGRSGHLDKAAKL---VHEIPFEPSVM 618

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
            + ALLSAC     V+ G        RV  I+P+
Sbjct: 619 VWRALLSACVIHNDVELGR---ISAQRVLEIEPE 649


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 188/593 (31%), Positives = 306/593 (51%), Gaps = 82/593 (13%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
           W++I  N L++GY Q                   GK+ E  +LFD++P RDV+SWN M+S
Sbjct: 191 WDAISWNALMSGYVQ------------------WGKMSEARELFDRMPGRDVVSWNIMVS 232

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            Y   G   E   L           D  T  +++S   +   LE  + +   + E     
Sbjct: 233 GYARRGDMVEARRLFDAAPVR----DVFTWTAVVSGYAQNGMLEEARRVFDAMPER---- 284

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           +    N +V  Y +   + EA++L         +V  W T+++GY ++   +EA+ +FD 
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR--NVASWNTMLTGYAQAGMLEEAKAVFDT 342

Query: 287 MVERNLISWTLMISGM---------------LNQDAEFKYKS--------CASIGALYHG 323
           M +++ +SW  M++                 + +  E+  +S        CA I AL  G
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402

Query: 324 IWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
           + +H  + +    +                N+E A + F E+ E++V  W ++IA YA  
Sbjct: 403 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARH 462

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G  ++A+++F  M  T TKPD +T + +L+ACSH GLV++G  +       + +  K +H
Sbjct: 463 GFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEH 522

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           Y CM+DLLGRAG L E+ + +  MP  PD ++W +LL A R H+N +L   A + + E +
Sbjct: 523 YTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           P N G +VLL+NIYA +G+  D  ++R+ + + G+KK  G+S IE    VH F++GD  +
Sbjct: 583 PENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVH 642

Query: 549 PHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSE 592
           P  E+IY  L +++M +++ G                +E  L+ H E+LAVA+G+++   
Sbjct: 643 PEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPP 702

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              IR++ NLR+CGDCH+  K  S +  R I++RD+ RFH F+GG CSC DYW
Sbjct: 703 GRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 157/363 (43%), Gaps = 89/363 (24%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG-------MYR---------------- 175
           + G++ +  +LF  +P R   ++N M++ Y++ G       ++R                
Sbjct: 50  RAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHA 109

Query: 176 --------EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN-LHLFLEESTMKI 226
                   +  GL  +M       D VT   +IS+      + + ++   L  E+  +  
Sbjct: 110 LAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSW 165

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           +G L  Y+     + G++ EA+ L       E D + W  L+SGYV+  +  EAR LFD 
Sbjct: 166 NGMLAAYV-----RNGRVEEARGLFN--SRTEWDAISWNALMSGYVQWGKMSEARELFDR 218

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346
           M  R+++SW +M+SG                           Y ++     D +E A  L
Sbjct: 219 MPGRDVVSWNIMVSG---------------------------YARRG----DMVE-ARRL 246

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F     ++V+ WT+V++ YA  G  ++A  +F  M E     + V++ A+++A     ++
Sbjct: 247 FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMM 302

Query: 407 DEGYDFLSKKSRVYNIKP--KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           DE  +       ++N+ P   +  +  M+    +AG LEE+     +MP    VS W+++
Sbjct: 303 DEAKE-------LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS-WAAM 354

Query: 465 LRA 467
           L A
Sbjct: 355 LAA 357


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 214/724 (29%), Positives = 339/724 (46%), Gaps = 99/724 (13%)

Query: 1   FTDRSVEPQLTETIFEPKLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERI 60
           F++        + + E      GL+P +        VC   +DV M  R          I
Sbjct: 107 FSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIR----------I 156

Query: 61  HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP 120
           H   +   L  D +++  + +     G L  AQ +  + +      WN++I      GY 
Sbjct: 157 HGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYI 216

Query: 121 QEVFAIYLYL-------VTRTVLLN----------------------------------- 138
            E F ++  +       V    +LN                                   
Sbjct: 217 FEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANG 276

Query: 139 ------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
                 KCG L    ++F  +  + V SWN +I      G  R+ L L  +M   G+ PD
Sbjct: 277 FVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPD 336

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
             T+ SL+ A   L+ L  GK +H F+    ++I   +   L+ +Y  CG+   A+ L  
Sbjct: 337 WFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFD 396

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
             E  E   V W  ++SGY ++   ++A  LF ++V        + +  +L         
Sbjct: 397 GME--EKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLG-------- 446

Query: 313 SCASIGALYHGIWVHVYIKKNQI---------SID------NIELAYDLFSEISEKNVYL 357
           +C+   AL  G   H Y  K  +         +ID       I+ +  +F  +  K++  
Sbjct: 447 ACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLAS 506

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           W ++IAAY + G  +++I+LF  M + G  PD  TFI +L+ CSH GLV+EG  + ++  
Sbjct: 507 WNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQ 566

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             + I+PK++HY C++D+LGRAG L+++   +  MP  PD  +WSSLL  CR    +++ 
Sbjct: 567 NFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIG 626

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           +   + L E +P N   +V L+N+YA +GR DD+ R+R  ++D+GL+K  G S IE GG 
Sbjct: 627 QIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGK 686

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ETSLQHRERL 581
           VH F +GD   P S+E+ +   ++E  + + G +                E    H E+L
Sbjct: 687 VHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKL 746

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+ FGL++T++ TT+RI  NLRIC DCH+  K  S+V  REI+IRDN RFH F+ G CSC
Sbjct: 747 AICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSC 806

Query: 642 RDYW 645
            DYW
Sbjct: 807 GDYW 810



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 107/505 (21%), Positives = 203/505 (40%), Gaps = 85/505 (16%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           E IH  +I   L+ D  +   +       G +  A ++        +  WNSII     N
Sbjct: 51  EVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSEN 110

Query: 118 GYPQEVFAI--------------------YLYLVTRTV---------------------- 135
           G+ ++ F +                     L +  R V                      
Sbjct: 111 GFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVR 170

Query: 136 -------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG-AE 187
                  + +KCG L E   LFDK   ++ +SWNTMI    + G   E   L  +M   E
Sbjct: 171 VNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQE 230

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
            +  +EVT+++++ A  ++  L   K LH +      +    + N  V  Y KCG +  A
Sbjct: 231 DIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICA 290

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           +++   Y ++   V  W  L+ G  ++ +  +A  L+ +M    L+     I  +L   A
Sbjct: 291 ERVF--YSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASA 348

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISE 352
             K        +L +G  VH ++ ++ + ID+                  A  LF  + E
Sbjct: 349 HLK--------SLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEE 400

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           K+   W ++I+ Y+  G  + A+ LF ++   G +P  +  +++L ACS    +      
Sbjct: 401 KSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALR----- 455

Query: 413 LSKKSRVYNIKPKMQH---YGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           L K++  Y +K  +       C  +D+  ++G ++ES +    +    D++ W++++ A 
Sbjct: 456 LGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAAY 514

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDG 493
             H + + +   F+ + +   + DG
Sbjct: 515 GVHGDGEESIELFERMRKVGQMPDG 539


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 197/575 (34%), Positives = 303/575 (52%), Gaps = 44/575 (7%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           +++   I    L +  P    +  L  +     L+  G +    +LF ++   ++ SWN+
Sbjct: 1   MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60

Query: 164 MI-SCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           MI  C  S    +E + L  KM   G  +P+  TM  ++ A + +  LE G+ +H  + +
Sbjct: 61  MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 120

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           S    S  +   LV+ Y KC  I  A K+    EI + ++V W+T++SGY +    +EA 
Sbjct: 121 SGFGSSPFVETALVNFYAKCEDIVLASKVFD--EITDRNLVAWSTMISGYARIGLVNEAL 178

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--- 338
            LF +M +  ++   + +  +++        +CA+ GAL  G WVH YI K  I  D   
Sbjct: 179 GLFRDMQKAGVVPDEVTMVSVIS--------ACAASGALDTGKWVHAYINKQLIETDLEL 230

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        IE A ++F  +  K+   W+S+I   A+ G A+ A++ F  MEE   
Sbjct: 231 STALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKV 290

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           KP+ VTFI +LSAC+H GLV EG  + S     + I P M+ YGCMVDLL RA  +E++ 
Sbjct: 291 KPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDAC 349

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             + +MPI P+  IW +LL  C+  +N+  +E   + L E +P N   ++LL+N+YA   
Sbjct: 350 TLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMS 409

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
           + + MS++R K++ MG+K   G S IE  G VH+F  GD  +P + E+  +L +I   + 
Sbjct: 410 QWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVH 469

Query: 567 QQGLQ---------------ETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
             G Q               E +L +H ERLA+A+GL+ T     IRIV NLR+CGDCH 
Sbjct: 470 AVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHE 529

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             K+ S  Y REI++RD  RFH+F  G CSCRD+W
Sbjct: 530 VTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/538 (34%), Positives = 288/538 (53%), Gaps = 42/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +   +FDK+P+RDV+SW  +I+ Y    M  E +GLL  M      P+  T  S
Sbjct: 107 KCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTS 166

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ A        +G+ +H    +        + + L+DMY +C ++  A  +  R  +  
Sbjct: 167 LLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDR--LVS 224

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            + V W  L++G+ +  + +     F EM      +     S M        + + A IG
Sbjct: 225 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSM--------FSAFARIG 276

Query: 319 ALYHGIWVHVYIKKN----QISIDNIEL-----------AYDLFSEISEKNVYLWTSVIA 363
           AL  G WVH ++ K+       + N  L           A  +F  + ++++  W +++ 
Sbjct: 277 ALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLT 336

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           A A  G  ++A+  F E+ + G + +Q+TF+++L+ACSHGGLV EG  +     + YN++
Sbjct: 337 ALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQ 395

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P++ HY   VDLLGRAG L+E+  F+  MP+ P  ++W +LL ACR H+N K+ ++A  H
Sbjct: 396 PEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADH 455

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E DP + G  VLL NIYA  G+ +D +R+R  ++  G+KK+   S ++    VH F +
Sbjct: 456 VFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVA 515

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGL 587
            D  +P S +IY M  EI M +++ G                +ET L+ H E++A+AF L
Sbjct: 516 DDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFAL 575

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I+     +IRI+ N+RICGDCHS  K  S+V+ REIV+RD  RFH F  G CSC DYW
Sbjct: 576 INMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 110/245 (44%), Gaps = 19/245 (7%)

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
           GL  L  + A  ++P      S+I+A  + ++L   + +H  L  S +     LLN L+ 
Sbjct: 44  GLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIH 103

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY KCG + +A+ +  +  +   DVV WT L++GY ++    EA  L  +M+        
Sbjct: 104 MYCKCGAVSDARHVFDK--MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNG 161

Query: 297 LMISGMLNQDAEFKYKSCA--SIGALYHGIWVH------VYIKKNQISI----DNIELAY 344
              + +L         +C   SIG   H + V       VY+    + +    + +++A 
Sbjct: 162 FTFTSLLKATG-----ACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAI 216

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F  +  KN   W ++IA +A     +  +  F EM+  G      T+ ++ SA +  G
Sbjct: 217 MVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIG 276

Query: 405 LVDEG 409
            +++G
Sbjct: 277 ALEQG 281


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 196/632 (31%), Positives = 321/632 (50%), Gaps = 72/632 (11%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           R+C ++    ++H+   T+    D   +  +       GD   A+ +  +  +  +  WN
Sbjct: 53  RACQALPLLRQLHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWN 112

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
                 LI GY                   K G L+   +LFD++P R+V +WN M++  
Sbjct: 113 I-----LIGGYV------------------KNGDLETARKLFDEMPARNVATWNAMVAGL 149

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           T+ G+  E LG    M  EG+ PDE  + SL      LRD+  G+ +H ++  S +    
Sbjct: 150 TNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDM 209

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM- 287
            + + L  MY +CG + + +  L    +  +++V   T +SG  ++ + + A   F  M 
Sbjct: 210 CVGSSLAHMYMRCGFLRDGEAAL--RALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMR 267

Query: 288 ---VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS--IDNIEL 342
              VE N +++   ++            SC+ + AL  G  +H    K  +   +  +  
Sbjct: 268 GAGVEANAVTFVSAVT------------SCSDLAALAQGQQIHALAIKTGVDKVVPVMTS 315

Query: 343 AYDLFS-------------EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
              ++S             E S  ++ L +++I+AY   GH QKA+ LF +M   G +P+
Sbjct: 316 LVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPN 375

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
           +VTF+ LL ACSH GL DEG +     ++ Y ++P ++HY C+VDLLGR+G L E+ + I
Sbjct: 376 EVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLI 435

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
            SMP+ PD  IW +LL AC+  +   +AE   + + E DP +  ++VLL+NI A + R +
Sbjct: 436 LSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWE 495

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           D+S++R  +R+  ++K+ G S +E  G +H+F +GD  +    EI   L E+   ++Q G
Sbjct: 496 DVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQCG 555

Query: 570 L---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
                           +E SL  H E+LA+AF  +S  E   IR++ NLR+C DCH  +K
Sbjct: 556 YAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIK 615

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + S+V  REIV+RD  RFH F+ G+CSC DYW
Sbjct: 616 LMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 198/562 (35%), Positives = 309/562 (54%), Gaps = 64/562 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           GK++    LF +  + D+  +   I+  +  G+  +   L  ++ +  ++P+E T  SL+
Sbjct: 78  GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137

Query: 201 -SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            S  TK      GK +H  + +  + I   +   LVD+Y K G +  AQK+  R  + E 
Sbjct: 138 KSCSTK-----SGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR--MPER 190

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-----------MLNQD-- 306
            +V  T +++ Y K    + AR LFD M ER+++SW +MI G           ML Q   
Sbjct: 191 SLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLL 250

Query: 307 AEFKYK-----------SCASIGALYHGIWVHVYIKKNQISID---------------NI 340
           AE K K           +C+ IGAL  G W+HV++K ++I ++               ++
Sbjct: 251 AEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSL 310

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE-TGTKPDQVTFIALLSA 399
           E A  +F++   K++  W ++IA YAM G++Q A+ LF EM+  TG +P  +TFI  L A
Sbjct: 311 EEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQA 370

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           C+H GLV+EG        + Y IKPK++HYGC+V LLGRAG L+ +   I +M +  D  
Sbjct: 371 CAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSV 430

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           +WSS+L +C+ H +  L +   ++L   +  N G +VLL+NIYA  G  + ++++R  ++
Sbjct: 431 LWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMK 490

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------- 569
           + G+ K+ G S IE    VH+F +GD  +  S+EIY ML +I   ++  G          
Sbjct: 491 EKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQ 550

Query: 570 -LQET----SLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
            L+ET    SLQ H ERLA+A+GLIST   + ++I  NLR+C DCH+  K+ S++  R+I
Sbjct: 551 DLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKI 610

Query: 624 VIRDNGRFHRFQGGQCSCRDYW 645
           V+RD  RFH F  G CSC D+W
Sbjct: 611 VMRDRNRFHHFTDGSCSCGDFW 632



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 140/281 (49%), Gaps = 38/281 (13%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           +SCS+    + IH+H++   L  DP ++T + +     GD+  AQ++  +   PE  + +
Sbjct: 138 KSCST-KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR--MPERSLVS 194

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
           S     +I  Y ++                  G ++    LFD +  RD++SWN MI  Y
Sbjct: 195 S---TAMITCYAKQ------------------GNVEAARALFDSMCERDIVSWNVMIDGY 233

Query: 169 TSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
              G   + L L  K+ AEG   PDE+T+V+ +SA +++  LE G+ +H+F++ S ++++
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             +   L+DMY KCG + EA  +L   +    D+V W  +++GY       +A RLF+EM
Sbjct: 294 VKVCTGLIDMYSKCGSLEEA--VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEM 351

Query: 288 VERNLISWTLMISGMLNQDAEF--KYKSCASIGALYHGIWV 326
                      I+G+   D  F    ++CA  G +  GI +
Sbjct: 352 QG---------ITGLQPTDITFIGTLQACAHAGLVNEGIRI 383


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 195/664 (29%), Positives = 342/664 (51%), Gaps = 94/664 (14%)

Query: 49  RSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           +SC+S+   D  +++H+    +  + D  +++ +    +    +  A+++  +  + ++ 
Sbjct: 112 KSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVV 171

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL------PNRDVI 159
           +W+++I      GY                  ++ G ++E  +LF ++      PN  ++
Sbjct: 172 VWSAMIA-----GY------------------SRLGLVEEAKELFGEMRSGGVEPN--LV 206

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SWN M++ + + G Y E +G+   M  +G  PD  T+  ++ A   L D+ +G  +H ++
Sbjct: 207 SWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYV 266

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
            +  +     +++ ++DMY KCG + E  ++    E++E+++      ++G  ++   D 
Sbjct: 267 IKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFD--EVEEMEIGSLNAFLTGLSRNGMVDT 324

Query: 280 ARRLF----DEMVERNLISWTLMISGMLNQDAEFK-----------------------YK 312
           A  +F    D+ +E N+++WT +I+       + +                         
Sbjct: 325 ALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIP 384

Query: 313 SCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYL 357
           +C +I AL HG  +H +  +  I  D                I+LA   F ++S  N+  
Sbjct: 385 ACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVS 444

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           W +V+  YAM G A++ +++F  M ++G KPD VTF  +LSAC+  GL +EG+   +  S
Sbjct: 445 WNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMS 504

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             + I+PKM+HY C+V LL R G LEE+ + I  MP  PD  +W +LL +CR H N+ L 
Sbjct: 505 EEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLG 564

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E A + L   +P N G ++LL+NIYA  G  D+ +RIR  ++  GL+K  GYS IE G  
Sbjct: 565 EIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHK 624

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQ--------HRERL 581
           VH   +GD  +P  ++I   L+++ M +++ G        LQ+   Q        H E+L
Sbjct: 625 VHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKL 684

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           AV  GL++TS    ++++ NLRIC DCH+ +KV S++  REI +RD  RFH F+ G CSC
Sbjct: 685 AVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSC 744

Query: 642 RDYW 645
            D+W
Sbjct: 745 GDFW 748



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 136/331 (41%), Gaps = 79/331 (23%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           L   LP+  + S++++I  +     +   L   S +    + PD   + S I +   LR 
Sbjct: 60  LSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRA 119

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L+ G+ LH F   S       + + L  MY KC +I +A+KL  R  + + DVV+W+ ++
Sbjct: 120 LDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDR--MPDRDVVVWSAMI 177

Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQD------------------ 306
           +GY +    +EA+ LF EM    VE NL+SW  M++G  N                    
Sbjct: 178 AGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFW 237

Query: 307 AEFKYKSCA--SIGALYH---GIWVHVYIKKNQISIDN--IELAYDLFS----------- 348
            +    SC   ++G L     G  VH Y+ K  +  D   +    D++            
Sbjct: 238 PDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRV 297

Query: 349 -------EISEKNVYL------------------------------WTSVIAAYAMAGHA 371
                  EI   N +L                              WTS+IA+ +  G  
Sbjct: 298 FDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKD 357

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
            +A++LF +M+  G +P+ VT  +L+ AC +
Sbjct: 358 LEALELFRDMQAYGVEPNAVTIPSLIPACGN 388


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 202/649 (31%), Positives = 322/649 (49%), Gaps = 98/649 (15%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           K ++ C   + V  ++  C+SI + ++ H+ L+ T+L+ +P  S+++  FL         
Sbjct: 3   KPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLA-------- 54

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152
                                                       L+  G L    +LF +
Sbjct: 55  --------------------------------------------LSHSGDLNYARKLFTQ 70

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           + N D    NTMI  Y       E + L   M   GV  D  T   +++A  +L  +++G
Sbjct: 71  MQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLG 130

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           +  H  + ++       ++N L+  Y  CG  G A  +     +   DVV W  +++ ++
Sbjct: 131 RRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVR--DVVTWNIMINAHL 188

Query: 273 KSNERDEARRLFDEMVE-RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
                ++A  L DEM +  NL    + +  ++         +CA +G L  G ++H Y K
Sbjct: 189 NKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLV--------PACAQLGNLERGKFLHSYSK 240

Query: 332 ---KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
              K +I+ D               +I+LA  +F  +  +NV+ W ++I   AM GH + 
Sbjct: 241 ELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGED 300

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           AI LF +ME     PD VTFIALL ACSH GLVDEG          + I+P+M+HYGC+V
Sbjct: 301 AISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVV 360

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLL RA  ++++  FI +MPI  +  +W++LL ACR   +  LAE   + + E +P + G
Sbjct: 361 DLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCG 420

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            +V+L+N+YA   + D   ++R ++++ G++K  G S IE  G +H+F +GD  +  +E+
Sbjct: 421 RYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQ 480

Query: 554 IYLMLNEIE-----------------MTLQQQGLQETSLQHRERLAVAFGLISTSEKTTI 596
           IY M+ E+                    ++++  + +   H E+LA+A GLIST   + I
Sbjct: 481 IYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPI 540

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           RIV NLR+C DCHSF+KVTS+VYNREIV RD  RFH F+ G CSC D+W
Sbjct: 541 RIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 198/655 (30%), Positives = 332/655 (50%), Gaps = 79/655 (12%)

Query: 39  PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P ++ ++ V  +C+S+  + R   +H + + + L  D  +   V +     G +  A ++
Sbjct: 248 PDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKV 307

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
             +    ++  WN+     ++ GY Q                   G+  +   LF+K+  
Sbjct: 308 FERMKVKDVVSWNA-----MVTGYSQ------------------IGRFDDALGLFEKIRE 344

Query: 156 R----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
                +V++W+ +I+ Y   G+  E L +  +M   G  P+ VT+VSL+S       L  
Sbjct: 345 EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLH 404

Query: 212 GKNLH-------LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           GK  H       L L+E+       ++N L+DMY KC     A+ +       +  VV W
Sbjct: 405 GKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTW 464

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERN--LISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           T L+ G  +  E +EA  LF +M++ +  ++     IS  L         +CA +GAL  
Sbjct: 465 TVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCAL--------MACARLGALRF 516

Query: 323 GIWVHVYIKKNQIS----------ID------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
           G  +H Y+ +N+            ID      +++ A  +F  + ++N   WTS++  Y 
Sbjct: 517 GRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYG 576

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
           M G  ++A+ +F EM++    PD VTF+ +L ACSH G+VD+G ++ +  ++ + + P  
Sbjct: 577 MHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGA 636

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HY CMVDLL RAG L+E+   I  MP+ P  ++W +LL ACR + NV+L E+A   L E
Sbjct: 637 EHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLE 696

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            +  NDG++ LL+NIYA A    D++RIR  +++ G+KK+ G S ++       F +GD 
Sbjct: 697 LESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDW 756

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERLAVAFGLIST 590
            +P S++IY +L ++   ++  G    +                 +H E+LA+A+G+++T
Sbjct: 757 SHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTT 816

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +    IRI  NLR CGDCHS     S +   EI++RD+ RFH F+ G CSCR YW
Sbjct: 817 APGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 200/457 (43%), Gaps = 74/457 (16%)

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR-- 156
           G+ P  +   S+      +G+   VF +   LV+   +  +CG  +   Q+FD++  R  
Sbjct: 156 GEIPSFRCGASVHAVVFASGFEWNVF-VGNGLVS---MYGRCGAWENARQVFDEMRERGV 211

Query: 157 -DVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKN 214
            D++SWN++++ Y   G     + +  +M  + G+ PD V++V+++ A   +     GK 
Sbjct: 212 GDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ 271

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +H +   S +     + N +VDMY KCG + EA K+  R ++   DVV W  +V+GY + 
Sbjct: 272 VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK--DVVSWNAMVTGYSQI 329

Query: 275 NERDEARRLF----DEMVERNLISWTLMISGMLNQDAEFK-------------------- 310
              D+A  LF    +E +E N+++W+ +I+G   +   F+                    
Sbjct: 330 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTL 389

Query: 311 ---YKSCASIGALYHGIWVHVYIKKNQISIDN---------IELAYDLFSEI-------- 350
                 CAS G L HG   H +  K  +++D          I    D++S+         
Sbjct: 390 VSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 449

Query: 351 -------SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSACS 401
                   +++V  WT +I   A  G A +A++LF +M   +    P+  T    L AC+
Sbjct: 450 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACA 509

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQH-----YGCMVDLLGRAGHLEESANFITSMPIPP 456
             G +  G     ++   Y ++ + +        C++D+  ++G ++ +     +M    
Sbjct: 510 RLGALRFG-----RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 564

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
            VS W+SL+     H   + A   F  + +   + DG
Sbjct: 565 GVS-WTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDG 600



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 141/346 (40%), Gaps = 63/346 (18%)

Query: 115 LINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
           L+ G P +      ++++  +  N   K   V +      +  V  WN +I     +G  
Sbjct: 72  LVQGLPHDP----THIISMYLTFNSPAKALSVLRRLHP-SSHTVFWWNQLIRRSVHLGFL 126

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
            + L L  +M   G  PD  T   ++ A  ++     G ++H  +  S  + +  + N L
Sbjct: 127 EDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGL 186

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           V MY +CG    A+++        V D+V W ++V+ Y++  +   A ++F+ M E   I
Sbjct: 187 VSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGI 246

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI------------------ 335
               +   ++N        +CAS+GA   G  VH Y  ++ +                  
Sbjct: 247 RPDAV--SLVN-----VLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCG 299

Query: 336 ----------------------------SIDNIELAYDLFSEISEK----NVYLWTSVIA 363
                                        I   + A  LF +I E+    NV  W++VIA
Sbjct: 300 MMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIA 359

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
            YA  G   +A+D+F +M   G++P+ VT ++LLS C+  G +  G
Sbjct: 360 GYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHG 405


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 190/595 (31%), Positives = 301/595 (50%), Gaps = 91/595 (15%)

Query: 140 CGKLKEVCQLFDKLPNRDVI-------------------------------SWNTMISCY 168
           C  +    +LFD++P RD +                               +WN MIS Y
Sbjct: 205 CSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGY 264

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
              G ++E L L  KM   G+  D++T  ++ISA   +   +MGK +H ++ ++ +  + 
Sbjct: 265 VHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNH 324

Query: 229 SLL----NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
           S      N L+ +Y K  K+ EA+K+   Y +   +++ W  ++SGYV +   +EA+  F
Sbjct: 325 SFCLSVSNALITLYCKNNKVDEARKIF--YAMPVRNIITWNAILSGYVNAGRMEEAKSFF 382

Query: 285 DEMVERNLISWTLMISGMLN-------------------QDAEFKYK----SCASIGALY 321
           +EM  +NL++ T+MISG+                     +  +F +     +C+ +GAL 
Sbjct: 383 EEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALE 442

Query: 322 HGIWVHVYI----KKNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYA 366
           +G  +H  +     ++ +S+ N           +E A  +F  +   ++  W S+IAA  
Sbjct: 443 NGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALG 502

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             GH  KAI+LF +M + G  PD++TF+ +L+ACSH GLV++G  + +     Y I P  
Sbjct: 503 QHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCE 562

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
            HY  MVDL  RAG    +   I SMP  P   +W +LL  CR H N+ L   A + L +
Sbjct: 563 DHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFK 622

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
             P NDG +VLL+NIYA  GR +D++++R  +RD  ++K+   S IE    VH F   D 
Sbjct: 623 LMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDD 682

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLIST 590
            +P    +Y  L ++ + +++ G                +E +L  H E+LAV FG++  
Sbjct: 683 VHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKL 742

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
               T+R+  N+RICGDCH+  K  S+V  REI++RD  RFH F+ G CSCRDYW
Sbjct: 743 PPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 107/493 (21%), Positives = 205/493 (41%), Gaps = 112/493 (22%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+H+I +          ++ E    + ++ YA+Q+  +   P+     +I    LI  Y
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPD-----AIARTTLITAY 89

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREG 177
                                G L+   ++F+  P   RD + +N MI+ Y   G     
Sbjct: 90  C------------------ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSA 131

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTK-LRDLEMGKNLHLFLEESTMK-ISGSLLNYLV 235
           L L   M  +   PD+ T  S++SA    + + +    +H  + ++ M  +S S+LN L+
Sbjct: 132 LELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALL 191

Query: 236 DMYFK--------CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            +Y K        C  +  A+KL    E+ + D + WTT+++GYV++++ + AR +F+ M
Sbjct: 192 SVYVKRASELGIPCSAMVSARKLFD--EMPKRDELTWTTMITGYVRNDDLNGAREVFEAM 249

Query: 288 VERNLISWTLMISGMLN----QDA---------------EFKY----KSCASIGALYHGI 324
           VE    +W  MISG ++    Q+A               +  Y     +CA++G+   G 
Sbjct: 250 VENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGK 309

Query: 325 WVHVYIKKNQ--------ISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAY 365
            +H YI KN+        +S+ N           ++ A  +F  +  +N+  W ++++ Y
Sbjct: 310 QMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGY 369

Query: 366 AMAGHAQKA-------------------------------IDLFLEMEETGTKPDQVTFI 394
             AG  ++A                               + LF +M   G +P    F 
Sbjct: 370 VNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFA 429

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
             L+ACS  G ++ G    ++   +   +  +     M+ +  + G +E + +   +MP 
Sbjct: 430 GALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMISMYAKCGVVEAAESVFVTMP- 487

Query: 455 PPDVSIWSSLLRA 467
             D+  W+S++ A
Sbjct: 488 SVDLVSWNSMIAA 500



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++    +F  +P+ D++SWN+MI+     G   + + L  +M  EGV PD +T ++
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531

Query: 199 LISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +++A +    +E G++  +  LE   +         +VD++ + G    A+ ++      
Sbjct: 532 VLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMP-S 590

Query: 258 EVDVVLWTTLVSG 270
           +    +W  L++G
Sbjct: 591 KPGAPVWEALLAG 603


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 185/538 (34%), Positives = 288/538 (53%), Gaps = 42/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +   +FDK+P+RDV+SW  +I+ Y    M  E +GLL  M      P+  T  S
Sbjct: 4   KCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTS 63

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ A        +G+ +H    +        + + L+DMY +C ++  A  +  R  +  
Sbjct: 64  LLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDR--LVS 121

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            + V W  L++G+ +  + +     F EM      +     S M        + + A IG
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSM--------FSAFARIG 173

Query: 319 ALYHGIWVHVY-IKKNQ---ISIDNIEL-----------AYDLFSEISEKNVYLWTSVIA 363
           AL  G WVH + IK  Q     + N  L           A  +F  + ++++  W +++ 
Sbjct: 174 ALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLT 233

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           A A  G  ++A+  F E+ + G + +Q+TF+++L+ACSHGGLV EG  +     + YN++
Sbjct: 234 ALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQ 292

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P++ HY   VDLLGRAG L+E+  F+  MP+ P  ++W +LL ACR H+N K+ ++A  H
Sbjct: 293 PEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADH 352

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E DP + G  VLL NIYA  G+ +D +R+R  ++  G+KK+   S ++    VH F +
Sbjct: 353 VFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVA 412

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGL 587
            D  +P S +IY M  EI M +++ G                +ET L+ H E++A+AF L
Sbjct: 413 DDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFAL 472

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I+     +IRI+ N+RICGDCHS  K  S+V+ REIV+RD  RFH F  G CSC DYW
Sbjct: 473 INMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 303/551 (54%), Gaps = 69/551 (12%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LFDK+P RD+ SWN M++ Y      +    L  +M       D V+  +++S   +   
Sbjct: 17  LFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPER----DIVSWNAMLSGYAQNGF 72

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           ++  + +     +  +K +G   N L+  Y + G+I +A++L    ++D   +V W  L+
Sbjct: 73  VDEAREI---FYKMPLK-NGISWNGLLAAYVQNGRIEDAKRLF-ESKMDWT-LVSWNCLM 126

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------------LNQDAEFKYKS 313
            G+V+       R LFD M +R+ ISW+ MI+G                + +D E   +S
Sbjct: 127 GGFVRKR-----RNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRS 181

Query: 314 --------CASIGALYHGIWVHV-----------YIKKNQISI----DNIELAYDLFSEI 350
                   C++I AL  G  +H            Y+    +++     +I+ A D F EI
Sbjct: 182 SFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEI 241

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            EK+V  W ++I  YA  G  ++A+ +F  M+ TG +PD  T +++L+ACSH GLVD+G 
Sbjct: 242 LEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGS 301

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
           ++    +R Y I  K+ HY CMVDLLGRAG LEE+ N + +MP  PD + W +LL A R 
Sbjct: 302 EYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRI 361

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           H N +L E A + + E +P N G ++LL+ +YA +GR  D  ++R+++R+ G+KK  GYS
Sbjct: 362 HGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYS 421

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL-------------- 575
            +E    +H F  GD  +PH+++IY  L E+++ L+Q+G +  T+L              
Sbjct: 422 WLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHML 481

Query: 576 -QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
             H E+LAVA+G++       IR++ NLR+C DCH+ +K  S++  R I++RDN RFH F
Sbjct: 482 KYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYF 541

Query: 635 QGGQCSCRDYW 645
           +GG CSCRD+W
Sbjct: 542 EGGSCSCRDFW 552



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 137/296 (46%), Gaps = 27/296 (9%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKC---GKLKEVCQLFDKLPNRDVISWNT 163
           WN ++   + NG  ++   ++   +  T++   C   G +++   LFD +P RD ISW+ 
Sbjct: 91  WNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSA 150

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MI+ Y+  G   E L    +M  +    +  +    +S  + +  LE+G+ LH  L ++ 
Sbjct: 151 MIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAG 210

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
            +    + N L+ MY KCG I EA+      EI E DVV W T++ GY +    +EA  +
Sbjct: 211 YQTGWYVGNALLAMYCKCGSIDEARDAF--QEILEKDVVSWNTMIHGYARHGFGEEALTV 268

Query: 284 FDEMV-------ERNLISWTLMIS--GMLNQDAEFKYKSCASIGA----LYHGIWVHVYI 330
           F+ M        +  ++S     S  G+++Q +E+ Y      G     +++   V +  
Sbjct: 269 FELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLG 328

Query: 331 KKNQISIDNIELAYDLFSEIS-EKNVYLWTSVIAAYAMAGH---AQKAIDLFLEME 382
           +  Q     +E A +L   +  E +   W +++ A  + G+    +KA  +  EME
Sbjct: 329 RAGQ-----LEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEME 379



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 91/199 (45%), Gaps = 47/199 (23%)

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           ++SGY+++++ D AR LFD+M ER+L SW +M++G                         
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTG------------------------- 35

Query: 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
             Y++       +++ A  LF  + E+++  W ++++ YA  G   +A ++F +M     
Sbjct: 36  --YVRNR-----DLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKM----P 84

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
             + +++  LL+A    G +++       K     +   +  + C++      G + +  
Sbjct: 85  LKNGISWNGLLAAYVQNGRIEDAKRLFESK-----MDWTLVSWNCLM-----GGFVRKRR 134

Query: 447 NFITSMPIPPDVSIWSSLL 465
           N   +MP    +S WS+++
Sbjct: 135 NLFDNMPQRDSIS-WSAMI 152


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 190/621 (30%), Positives = 319/621 (51%), Gaps = 72/621 (11%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY-----LYLVTRTVLLN--- 138
           G +  A+       E +   WN ++   + NG  +E   ++       +++   L++   
Sbjct: 145 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYV 204

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + GK+ E  +LFD++P RDV+SWN M+S Y   G   E   L           D  T  +
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----DVFTWTA 260

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++S   +   LE  + +   + E     +    N +V  Y +   + EA++L        
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR- 315

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------------L 303
            +V  W T+++GY ++   +EA+ +FD M +++ +SW  M++                 +
Sbjct: 316 -NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 304 NQDAEFKYKS--------CASIGALYHGIWVHVYIKKNQISID---------------NI 340
            +  E+  +S        CA I AL  G+ +H  + +    +                N+
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 434

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           E A + F E+ E++V  W ++IA YA  G  ++A+++F  M  T TKPD +T + +L+AC
Sbjct: 435 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLV++G  +       + +  K +HY CM+DLLGRAG L E+ + +  MP  PD ++
Sbjct: 495 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 554

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           W +LL A R H+N +L   A + + E +P N G +VLL+NIYA +G+  D  ++R+ + +
Sbjct: 555 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 614

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------- 570
            G+KK  G+S IE    VH F++GD  +P  E+IY  L +++M +++ G           
Sbjct: 615 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 674

Query: 571 -----QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                +E  L+ H E+LAVA+G+++      IR++ NLR+CGDCH+  K  S +  R I+
Sbjct: 675 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 734

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD+ RFH F+GG CSC DYW
Sbjct: 735 LRDSNRFHHFRGGSCSCGDYW 755



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 167/400 (41%), Gaps = 86/400 (21%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L +   LFD++P RD +++N MIS + + G+    + L           D V+   +++A
Sbjct: 116 LADARGLFDEMPVRDSVTYNVMISSHANHGL----VSLARHYFDLAPEKDAVSWNGMLAA 171

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV--- 259
             +   +E  +   LF   +   +     N L+  Y + GK+ EA++L  R    +V   
Sbjct: 172 YVRNGRVEEARG--LFNSRTEWDVIS--WNALMSGYVQWGKMSEARELFDRMPGRDVVSW 227

Query: 260 --------------------------DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
                                     DV  WT +VSGY ++   +EARR+FD M ERN +
Sbjct: 228 NIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV 287

Query: 294 SWTLMISG-----MLNQDAE-FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLF 347
           SW  M++      M+++  E F    C ++ +     W  +     Q  +  +E A  +F
Sbjct: 288 SWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-----WNTMLTGYAQAGM--LEEAKAVF 340

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS------ 401
             + +K+   W +++AAY+  G +++ + LF+EM   G   ++  F  +LS C+      
Sbjct: 341 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 400

Query: 402 -----HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD-----LLGRAGHLEESANFITS 451
                HG L+  GY                   GC V      +  + G++E++ N    
Sbjct: 401 CGMQLHGRLIRAGYGV-----------------GCFVGNALLAMYFKCGNMEDARNAFEE 443

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL--TETDP 489
           M    DV  W++++     H   K A   F  +  T T P
Sbjct: 444 ME-ERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKP 482



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 158/363 (43%), Gaps = 89/363 (24%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG-------MYR---------------- 175
           + G++ +  +LF  +P R   ++N M++ Y++ G       ++R                
Sbjct: 50  RAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHA 109

Query: 176 --------EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN-LHLFLEESTMKI 226
                   +  GL  +M       D VT   +IS+      + + ++   L  E+  +  
Sbjct: 110 LAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSW 165

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           +G L  Y+     + G++ EA+ L       E DV+ W  L+SGYV+  +  EAR LFD 
Sbjct: 166 NGMLAAYV-----RNGRVEEARGLFN--SRTEWDVISWNALMSGYVQWGKMSEARELFDR 218

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346
           M  R+++SW +M+SG                           Y ++     D +E A  L
Sbjct: 219 MPGRDVVSWNIMVSG---------------------------YARRG----DMVE-ARRL 246

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F     ++V+ WT+V++ YA  G  ++A  +F  M E     + V++ A+++A     ++
Sbjct: 247 FDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMM 302

Query: 407 DEGYDFLSKKSRVYNIKP--KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           DE  +       ++N+ P   +  +  M+    +AG LEE+     +MP    VS W+++
Sbjct: 303 DEAKE-------LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS-WAAM 354

Query: 465 LRA 467
           L A
Sbjct: 355 LAA 357



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 106/270 (39%), Gaps = 44/270 (16%)

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           S S  N ++  Y   G++  A  L     I   D   + TL+     S+   +AR LFDE
Sbjct: 68  STSTYNAMLAGYSANGRLPLAASLF--RAIPRPDNYSYNTLLHALAVSSSLADARGLFDE 125

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346
           M  R+ +++ +MIS   N                 HG+               + LA   
Sbjct: 126 MPVRDSVTYNVMISSHAN-----------------HGL---------------VSLARHY 153

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F    EK+   W  ++AAY   G  ++A  LF     + T+ D +++ AL+S     G +
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDVISWNALMSGYVQWGKM 209

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
            E  +   +          +  +  MV    R G + E+     + P+  DV  W++++ 
Sbjct: 210 SEARELFDRMP-----GRDVVSWNIMVSGYARRGDMVEARRLFDAAPV-RDVFTWTAVVS 263

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
               +  ++ A   F  + E + ++  A V
Sbjct: 264 GYAQNGMLEEARRVFDAMPERNAVSWNAMV 293


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 188/532 (35%), Positives = 286/532 (53%), Gaps = 43/532 (8%)

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
           V  L   LP+ D  S NT++  + S    R  L L  +  A    PD  T   L+ A  +
Sbjct: 78  VAVLSGLLPSPDPFSLNTVLRIFASSARPRVALALHRRHLA---PPDTHTYPPLLQACAR 134

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           L  L  G+ LH    ++ +     + N LV +Y  CG    A ++       E ++V W 
Sbjct: 135 LLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWN 194

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
           ++++G+  +   +E   +F EM+E         +  +L         +CA IG L  G  
Sbjct: 195 SVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLT--------ACAEIGVLALGRR 246

Query: 326 VHVYIKK---------NQISID------NIELAYDLFSEIS-EKNVYLWTSVIAAYAMAG 369
           VHV++ K             ID       ++ A  +F E+   + V  WTS+I   A+ G
Sbjct: 247 VHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNG 306

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
               A+ LF  ME     P ++T + +L ACSH GLVD+G+ +  +    Y I P+++H 
Sbjct: 307 FGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHL 366

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GCMVDLLGRAG +EE+ N+IT+MP+ P+  +W +LL AC  H+ +++ E A+  L E DP
Sbjct: 367 GCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDP 426

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            + G +VLL+N+YA  GR  D+  +R  +   G++K  G+SL+E    V++F  GD  +P
Sbjct: 427 GHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHP 486

Query: 550 HSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEK 593
            +++IY ML +I   L++QG                +E++L  H ERLA+AF L+ +   
Sbjct: 487 ETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPG 546

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           T IRIV NLR+CGDCH  +K+ S+VY+REI++RD  RFH F+GG CSC+DYW
Sbjct: 547 TPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 196/592 (33%), Positives = 309/592 (52%), Gaps = 77/592 (13%)

Query: 56  EFERIHSHLITTNLMRDPQISTQVFEF-LVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQ 114
            F +I SH I + + RDP +S+++  + L    D  +++ +  Q  +P +  WN +    
Sbjct: 43  SFNQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAY 102

Query: 115 LINGYPQEVFAIY------------------LYLVTRTVLLNK----------------- 139
             + +P E  A+Y                  L    R  LL+K                 
Sbjct: 103 SRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDV 162

Query: 140 ------------CGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMG 185
                       CG ++    +FD LP   RDV+SWN+MIS Y     Y   L +  ++ 
Sbjct: 163 FVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELL 222

Query: 186 AEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
            +G +SPDEVT+VS +S   +L  L++GK +H     S   +   + + L+DMY KCG+I
Sbjct: 223 GDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQI 282

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
            +A+K+  R  I   + V WT++++GY +S+   EA  LF EM      +    I+ +L+
Sbjct: 283 EDARKVFDR--IPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLS 340

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSE 349
                   +C   GAL  G W+H+Y ++N I +D               +I+ A ++F  
Sbjct: 341 --------ACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHG 392

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE-TGTKPDQVTFIALLSACSHGGLVDE 408
           +++ +++ W++VI+  AM G + KA+ LF +ME  +  +P+++TF+ +L AC+HGG VD+
Sbjct: 393 LTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDK 452

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G  + +  +++YN+ P ++HYGCMVDLLGRA  L E+  FI ++PI PDV IW SLL AC
Sbjct: 453 GLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFAC 512

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H N++LAE A K + E +P   GA VLL+N+YA A R  D+ R+R  +    +KKQ G
Sbjct: 513 RNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPG 572

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQHRER 580
            S +E  G VH+    D  +P    IY  +  I   LQ +G     L H+E+
Sbjct: 573 CSFVEIDGLVHELFVADRSHPEMGAIYETMISINKALQSKGFDPGILDHQEQ 624


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 175/525 (33%), Positives = 284/525 (54%), Gaps = 42/525 (8%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +P+   +SW  +I+ Y   G   E +G+  +  A G+ PD  T V +++A  ++ DLE G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 213 KNLHLFL-EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           + +     +E  +  S  +    +D+Y KCG++ +A+ +    E+   D V W  +V GY
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFD--EMKNRDAVAWGAMVGGY 118

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
             +    EA  LF  M           + G L+        +C  +GAL  G      + 
Sbjct: 119 ASNGHPREALDLFFAMQMEGAKPDCYTVVGALS--------ACTRLGALDLGRQAVGMVH 170

Query: 332 KNQI---------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            +++                  +   A+ +F ++ E+++ +W ++I    M GH + A  
Sbjct: 171 WDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFA 230

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           L  +M+++G K +  TFI LL +C+H GLV++G  +    + VY I P+++HYGCMVDL 
Sbjct: 231 LVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLF 290

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
            RAG LEE+   I  MP+  +  +W +LL  C+ H+N  LAEHA K L   +P N G +V
Sbjct: 291 SRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYV 350

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           +L+NIY+ +GR +D +++R++++  G++K    S +E  G VHKF  GD  +P S++IY 
Sbjct: 351 MLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYA 410

Query: 557 MLNEIEMTLQQQGLQETS----------------LQHRERLAVAFGLISTSEKTTIRIVN 600
            L+E+ M ++  G + T+                + H E++A+AF LI+T    TIR+  
Sbjct: 411 KLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTK 470

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCHS +K+ S++  REIV+RDN RFH F+ G CSC DYW
Sbjct: 471 NLRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 208/625 (33%), Positives = 306/625 (48%), Gaps = 88/625 (14%)

Query: 76  STQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV 135
           S ++    V  GD+  A ++           WNSI+                        
Sbjct: 44  SNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSIL----------------------AA 81

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
              K G  +   QLF+K+P  + +S+N M++C+       +  G    M  + V+    T
Sbjct: 82  FAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWN-T 140

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL-LNYLVDMYFKCGKIGEAQKLLGRY 254
           M+S + A+  L    MG+   LF   S M     +  + +V  Y  CG +  A +    Y
Sbjct: 141 MISAL-AQVGL----MGEARRLF---SAMPEKNCVSWSAMVSGYVACGDLDAAVECF--Y 190

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML-NQDAEFKYK- 312
                 V+ WT +++GY+K    + A RLF EM  R L++W  MI+G + N  AE   + 
Sbjct: 191 AAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRL 250

Query: 313 ---------------------SCASIGALYHGIWVHVYIKKNQISID------------- 338
                                 C+++ AL  G  VH  + K  +S D             
Sbjct: 251 FRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSK 310

Query: 339 --NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
             +++ A++LF +I  K+V  W ++I+ YA  G  +KA+ LF EM++ G KPD +TF+A+
Sbjct: 311 CGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAV 370

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L AC+H GLVD G  + +   R + I+ K +HY CMVDLLGRAG L E+ + I SMP  P
Sbjct: 371 LLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKP 430

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
             +I+ +LL ACR H+N+ LAE A K+L E DP     +V LAN+YA   R D ++ IR 
Sbjct: 431 HPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRR 490

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------ 570
            ++D  + K  GYS IE    VH F S D  +P    I+  L ++E  ++  G       
Sbjct: 491 SMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEF 550

Query: 571 ----------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                     ++  L H E+LA+AFGL+       IR+  NLR+CGDCHS  K  S +  
Sbjct: 551 VLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEG 610

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           REI++RD  RFH F+ G CSCRDYW
Sbjct: 611 REIIVRDTTRFHHFKDGFCSCRDYW 635



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/293 (17%), Positives = 114/293 (38%), Gaps = 44/293 (15%)

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY- 311
           ++E +  +V+    L++ YV+  + D A R+F++M  ++ ++W  +++    +   F+Y 
Sbjct: 33  QHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYA 92

Query: 312 ---------KSCASIGALYHGIWVHVYIKKNQISIDNIEL-------------------- 342
                     +  S   +    W H+ +   +   D++ L                    
Sbjct: 93  RQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMG 152

Query: 343 -AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  LFS + EKN   W+++++ Y   G    A++ F            +T+ A+++   
Sbjct: 153 EARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSV----ITWTAMITGYM 208

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPDV 458
             G V+       + S        +  +  M+      G  E+      +M    + P+ 
Sbjct: 209 KFGRVELAERLFQEMSM-----RTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNA 263

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHVLLANIYAKAGRLDD 510
              +S+L  C     ++L +   + + +    +D  A   L ++Y+K G L D
Sbjct: 264 LSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKD 316


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 289/520 (55%), Gaps = 41/520 (7%)

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
           D +SWN++I      G   + L    KM +  +  DE T+ S++++   ++ ++   ++H
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
             + ++  +    + N L+DMY K GK+  A  +  +  +D+ DVV WT+LV+GY  +  
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKM-VDK-DVVSWTSLVTGYSHNGS 122

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN--- 333
            +EA +LF +M    +    + ++ +L+        +CA +  +  G  +H  + K+   
Sbjct: 123 YEEAIKLFCKMRISGVYPDQIAVASVLS--------ACAELTVMDFGQQIHATLVKSGLE 174

Query: 334 -QISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
             +S+DN           I  A   F  +  ++V  WT++I  YA  G  + ++  + +M
Sbjct: 175 SSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQM 234

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
             TGTKPD +TFI LL ACSH GL+  G  +     +VY IKP  +HY CM+DLLGR+G 
Sbjct: 235 IATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGK 294

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           L E+   +  M + PD  +W +LL ACR H+ ++L E A K+L E +P+N   +V+L+N+
Sbjct: 295 LAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNM 354

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           Y+ AG+ +D +RIR  +R  G+ K+ GYS IE    V  F S D  +P   EIY  ++EI
Sbjct: 355 YSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEI 414

Query: 562 EMTLQQQG---------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRIC 605
            M +++ G               ++E  L  H E+LAVAFGL++  +   IRI  NLR+C
Sbjct: 415 IMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVC 474

Query: 606 GDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GDCH+ MK TS+VY R I++RD+  FH F  G+CSC DYW
Sbjct: 475 GDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 2/150 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K GKL     +F K+ ++DV+SW ++++ Y+  G Y E + L  KM   GV PD++ + S
Sbjct: 88  KQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVAS 147

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA  +L  ++ G+ +H  L +S ++ S S+ N LV MY KCG I +A +      +  
Sbjct: 148 VLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFD--NMPT 205

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            DV+ WT L+ GY ++     + + +D+M+
Sbjct: 206 RDVISWTALIVGYAQNGRGKHSLQFYDQMI 235



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 7/156 (4%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +  + FD +P RDVISW  +I  Y   G  +  L    +M A G  PD +T + 
Sbjct: 189 KCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIG 248

Query: 199 LISARTKLRDLEMGKNLHLFLEES-TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           L+ A +    L  G+     +++   +K        ++D+  + GK+ EA+ LL +  + 
Sbjct: 249 LLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVA 308

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
             D V+W  L++      E +       EM  +NL 
Sbjct: 309 P-DAVVWKALLAACRVHKELE-----LGEMAAKNLF 338


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 196/569 (34%), Positives = 298/569 (52%), Gaps = 48/569 (8%)

Query: 115 LINGYPQEVFAIYLYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISC 167
           L+ G      AI+  LVT TV  N       KCG+     ++FD +  R +ISWNTMI+ 
Sbjct: 72  LLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAG 131

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
           YT      E L L S+M  EG    E T+ S + A      +   K LH    +  +  S
Sbjct: 132 YTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSS 191

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             +    +D+Y KC  I +A  +     + E   V W++L +G+V++   +E   LF   
Sbjct: 192 SFVGTAFLDVYAKCNMIKDACWVFE--NMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQST 249

Query: 288 VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI------------ 335
               +      +S +L+        +CAS+  +  G  VH  I K+              
Sbjct: 250 QREGMQLTEFTVSSILS--------TCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVD 301

Query: 336 ---SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  IE +Y++F+++ EKNV LW ++IA+++   H+ +A+ LF +M++ G  P++VT
Sbjct: 302 VYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVT 361

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           ++++LSACSH GLV+EG  + +        +P + HY CMVD+LGR+G  +E+   +  M
Sbjct: 362 YLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKM 421

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P  P  S+W SLL + R H+N++LA  A + L   +P N G HVLL+N+YA +G  +++ 
Sbjct: 422 PFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVV 481

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ----- 567
             R  LRD G KK++G S IE  G +H F +G+  +P   ++Y  L EI   +++     
Sbjct: 482 VARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRA 541

Query: 568 ---------QGLQETSL--QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
                       Q+  L   H E+LA AFGLIS      I I  NLRICGDCHSFMK+ S
Sbjct: 542 NTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVS 601

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +  R++++RD  RFH F+ G CSC D+W
Sbjct: 602 CITERQVIVRDINRFHHFKDGSCSCGDFW 630


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 293/545 (53%), Gaps = 48/545 (8%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           TR+V          V ++F+ +P +D++SWNT+I+     G+Y E L ++ +MG   + P
Sbjct: 178 TRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKP 237

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T+ S++    +  D+  GK +H       +     + + L+DMY KC ++ ++ ++ 
Sbjct: 238 DSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF 297

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
               + E D + W ++++G V++   DE  R F +M+   +   +   S ++        
Sbjct: 298 TL--LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIM-------- 347

Query: 312 KSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVY 356
            +CA +  L+ G  +H YI +N                    NI  A  +F  +  +++ 
Sbjct: 348 PACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMV 407

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            WT++I   A+ G A  AI+LF +ME  G K       A+L+ACSHGGLVDE + + +  
Sbjct: 408 SWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSM 460

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           +R + I P ++HY  + DLLGRAG LEE+ +FI  M I P  SIW++LL ACR H+N+ +
Sbjct: 461 TRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDM 520

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
           AE     + E DP N GA++LLANIY+ A R  + ++ R  +R +G++K    S IE   
Sbjct: 521 AEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKN 580

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRER 580
            V+ F +GD  +P  E+I   +  +   ++++G + +TS                 H ER
Sbjct: 581 KVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSER 640

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+ FG+I+T    TIR+  NLR+C DCH+  K  S++  REIV+RDN RFH F+ G CS
Sbjct: 641 LAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCS 700

Query: 641 CRDYW 645
           C DYW
Sbjct: 701 CGDYW 705



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 163/385 (42%), Gaps = 51/385 (13%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           L +  +LF+ +     ++W ++I CYTS G+  + LG    M A G+ PD     S++ +
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA-QKLLGRYEI----- 256
              L DL +G++LH ++    +       N L++MY K   + E+ ++ LG  E+     
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMT 175

Query: 257 ------------------------DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
                                    E D+V W T+++G  ++   +E  R+  EM   NL
Sbjct: 176 ERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANL 235

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH------VYIKKNQISI----DNIEL 342
              +  +S +L   AE       S G   HG  +       +Y+  + I +      +  
Sbjct: 236 KPDSFTLSSVLPLIAE---NVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVAD 292

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           +  +F+ ++E++   W S+IA     G   + +  F +M     KP   +F +++ AC+H
Sbjct: 293 SCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAH 352

Query: 403 GGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
              +  G   + ++++     NI         +VD+  + G++  +      M +   VS
Sbjct: 353 LTTLHLGKQLHGYITRNGFDENIFIA----SSLVDMYAKCGNIRTAKQIFDRMRLRDMVS 408

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHL 484
            W++++  C  H     A   F+ +
Sbjct: 409 -WTAMIMGCALHGQAPDAIELFEQM 432


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 301/542 (55%), Gaps = 51/542 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG LK    + + + + DV+SWN+++  +   G+  E L L   M    +  D+ T  S
Sbjct: 312 KCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPS 371

Query: 199 LISARTKLRDLEMG----KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           +++         +G    K++H  + ++  +    + N LVDMY K G +  A  +  + 
Sbjct: 372 VLNCCV------VGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEK- 424

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + E DV+ WT+LV+GY ++N  +E+ ++F +M    +     +++ +L+        +C
Sbjct: 425 -MLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILS--------AC 475

Query: 315 ASIGALYHGIWVHVYIKKNQI----SIDN-----------IELAYDLFSEISEKNVYLWT 359
           A +  L  G  VH+   K+ +    S+ N           ++ A  +F  +  K+V  WT
Sbjct: 476 AELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWT 535

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I  YA  G  + ++  +  M  +GT+PD +TFI LL ACSH GLVDEG  +  + ++V
Sbjct: 536 AIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKV 595

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           Y IKP  +HY CM+DL GR+G L+E+   +  M + PD ++W SLL ACR H+N++LAE 
Sbjct: 596 YGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAER 655

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A  +L E +P+N   +V+L+N+Y+ + + +D+++IR  ++  G+ K+ G S +E    V+
Sbjct: 656 AATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVN 715

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAV 583
            F S D  +P   EIY  ++EI + +++ G                +E  L  H E+LAV
Sbjct: 716 TFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAV 775

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGL++      IRI  NLR+CGDCHS MK  S+V+ R I++RD+  FH F+ G+CSC D
Sbjct: 776 AFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGD 835

Query: 644 YW 645
           YW
Sbjct: 836 YW 837



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 165/379 (43%), Gaps = 66/379 (17%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG------------------- 177
           L+K G++ +  +LFDK+P +D  SWNTMIS Y ++G   E                    
Sbjct: 75  LSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSII 134

Query: 178 ------------LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
                         L   M  EG    + T+ S++   + L  ++ G+ +H F+ ++  +
Sbjct: 135 SGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFE 194

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
            +  ++  LVDMY KC  + EA+ L    E D  + VLWT +V+GY ++ +  +A   F 
Sbjct: 195 GNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFR 254

Query: 286 EM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--- 338
            M    VE N  ++  +++            +C+S+ A   G  VH +I K+    +   
Sbjct: 255 YMHAQGVECNQYTFPTILT------------ACSSVLARCFGEQVHGFIVKSGFGSNVYV 302

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                       +++ A ++   + + +V  W S++  +   G  ++A+ LF  M     
Sbjct: 303 QSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNM 362

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           K D  TF ++L+ C  G +  +    L  K+   N K        +VD+  + G ++ + 
Sbjct: 363 KIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSN---ALVDMYAKTGDMDCAY 419

Query: 447 NFITSMPIPPDVSIWSSLL 465
                M +  DV  W+SL+
Sbjct: 420 TVFEKM-LEKDVISWTSLV 437


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 217/681 (31%), Positives = 332/681 (48%), Gaps = 92/681 (13%)

Query: 47  VERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V ++CS   +I++   IHSH     L  D  + T + +F    G L  AQ++       +
Sbjct: 115 VLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD 174

Query: 104 IKIWNSIIEN-----------QLINGYPQEVF------------------------AIYL 128
           +  WN++I             QLI    +E                          A++ 
Sbjct: 175 VVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHG 234

Query: 129 YLVTR---------TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           Y V R         T LL+   KC  L    ++FD +  R+ +SW+ MI  Y      +E
Sbjct: 235 YCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKE 294

Query: 177 GLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
            L L  +M   + + P  VT+ S++ A  KL DL  G+ LH ++ +    +   L N L+
Sbjct: 295 ALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLL 354

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
            MY KCG I +A +      ++  D V ++ +VSG V++     A  +F  M    +   
Sbjct: 355 SMYAKCGVIDDAIRFFD--XMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------I 340
              + G+L         +C+ + AL HG   H Y+     + D                I
Sbjct: 413 LTTMLGVL--------PACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKI 464

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
             A ++F+ +   ++  W ++I  Y + G   +A+ LF ++   G KPD +TFI LLS+C
Sbjct: 465 SFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSC 524

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLV EG  +    SR ++I P+M+H  CMVD+LGRAG ++E+ +FI +MP  PDV I
Sbjct: 525 SHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 584

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           WS+LL ACR H+N++L E   K +    P + G  VLL+NIY+ AGR DD + IR+  +D
Sbjct: 585 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKD 644

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ--------- 571
            GLKK  G S IE  G VH F  GD  +    +I   L E+ + +++ G Q         
Sbjct: 645 WGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQD 704

Query: 572 -------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                  +  L H E+LA+AFG+++      I +  NLR+CGDCH+ +K  + +  REI 
Sbjct: 705 VEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREIT 764

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD  RFH F+ G C+C D+W
Sbjct: 765 VRDANRFHHFKNGTCNCGDFW 785



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 170/391 (43%), Gaps = 54/391 (13%)

Query: 128 LYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           L+ +TR  L   C ++    +LFD++PN  VI WN +I  Y   G +   + L   M   
Sbjct: 46  LHKLTRLYL--SCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHL 103

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV P++ T   ++ A + L  +E G  +H   +   ++    +   LVD Y KCG + EA
Sbjct: 104 GVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEA 163

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           Q+L     +   DVV W  +++G       D+A +L  +M E  +   +  I G+L    
Sbjct: 164 QRLFS--SMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVG 221

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------------IELAYDLFSEI 350
           E K        AL HG  +H Y  +   S DN                 +  A  +F  +
Sbjct: 222 EAK--------ALGHGKALHGYCVRR--SFDNGVVVGTGLLDMYAKCQCLLYARKIFDVM 271

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEG 409
             +N   W+++I  Y  +   ++A++LF +M  +    P  VT  ++L AC+    +  G
Sbjct: 272 GVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG 331

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLL---------GRAGHLEESANFITSMPIPPDVSI 460
                +K   Y IK      G ++D+L          + G ++++  F   M  P D   
Sbjct: 332 -----RKLHCYIIK-----LGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMN-PKDSVS 380

Query: 461 WSSLLRACRCHQNVKLAEHAFK--HLTETDP 489
           +S+++  C  + N  +A   F+   L+  DP
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGIDP 411


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 209/683 (30%), Positives = 334/683 (48%), Gaps = 81/683 (11%)

Query: 39   PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
            P  + V  +  +C+S+    +   +HSH I   +  D  +   + +      D+  A + 
Sbjct: 360  PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 96   IRQGDEPEIKIWN-------------------------SIIENQLINGYPQ------EVF 124
                +   I +WN                          +I NQ    YP        + 
Sbjct: 420  FLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFT--YPSILRTCTSLG 477

Query: 125  AIYL------YLVTRTVLLN------------KCGKLKEVCQLFDKLPNRDVISWNTMIS 166
            A+YL      +++     LN            K G+L    ++  +LP  DV+SW  MI+
Sbjct: 478  ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 167  CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
             Y    M+ E L L  +M   G+  D +   S ISA   +R L  G+ +H     +    
Sbjct: 538  GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 227  SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
              S+ N L+ +Y +CG+I EA   L   +I + + + W +LVSG  +S   +EA ++F  
Sbjct: 598  DLSINNALISLYARCGRIQEA--YLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVR 655

Query: 287  MV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----D 338
            M+    E N+ ++   IS   +     + +   S+  L  G      +  + IS+     
Sbjct: 656  MLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSM-VLKTGYDSEREVSNSLISLYAKSG 714

Query: 339  NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +I  A+  F+++SE+NV  W ++I  Y+  G   +A+ LF EM+  G  P+ VTF+ +LS
Sbjct: 715  SISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLS 774

Query: 399  ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
            ACSH GLV EG D+     +++++ PK +HY C+VDLLGRAG L+ +  +I  MPIP D 
Sbjct: 775  ACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADA 834

Query: 459  SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
             IW +LL AC  H+N+++ E A  HL E +P +   +VL++NIYA + +       R  +
Sbjct: 835  MIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLM 894

Query: 519  RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ-- 576
            +D G+KK+ G S IE    VH F +GD  +P + +IY  +  +     + G  + S    
Sbjct: 895  KDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLL 954

Query: 577  --------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                          H E+LA+AFGL+S      IR++ NLR+C DCH+++K  S++ NR 
Sbjct: 955  NESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRS 1014

Query: 623  IVIRDNGRFHRFQGGQCSCRDYW 645
            I++RD  RFH F GG CSC+D+W
Sbjct: 1015 IIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 168/349 (48%), Gaps = 35/349 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +K G ++   ++F+ +  +D+++W  MIS  +  G+  E + L   M A  + P    
Sbjct: 204 LYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYV 263

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S++SA TK++  E+G+ LH  + +        + N LV +Y +  K+  A+++     
Sbjct: 264 LSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS--T 321

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           ++  D V + +L+SG V+    D A  LF +M    L    + ++ +L+        +CA
Sbjct: 322 MNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLS--------ACA 373

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           S+GAL+ G+ +H +  K  +S D               ++E A+  F     +N+ LW  
Sbjct: 374 SVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNV 433

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ AY    +   + ++F +M+  G  P+Q T+ ++L  C+  G +     +L ++   +
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL-----YLGEQIHTH 488

Query: 421 NIKPKMQH--YGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            IK   Q   Y C  ++D+  + G L  +   +  +P   DV  W++++
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMI 536



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 155/347 (44%), Gaps = 27/347 (7%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
             L ++  KL    ++F  + +RD +S+N++IS     G     L L +KM  + + PD 
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           +T+ SL+SA   +  L  G  LH    ++ M     L   L+D+Y KC  +  A K    
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLX 422

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            E +  ++VLW  ++  Y + +   ++  +F +M    +I        +L        ++
Sbjct: 423 TETE--NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSIL--------RT 472

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           C S+GALY G  +H ++ K    ++                + LA  +   + E +V  W
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSW 532

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T++IA Y       +A+ LF EME  G + D + F + +SAC+    + +G   +  +S 
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSY 591

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
                  +     ++ L  R G ++E+      +    ++S W+SL+
Sbjct: 592 AAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLV 637



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 173/418 (41%), Gaps = 54/418 (12%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD+  NR V SWN MI  + +     +   L  +M AEG++P+  T   ++ A     
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG-G 172

Query: 208 DLEMG--KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           D+     K +H          S  + N L+D+Y K G I  A+K+     I   D+V W 
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNC--ICMKDIVTWV 230

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH--- 322
            ++SG  ++   +EA  LF +M    +     ++S +L+   + +      +G   H   
Sbjct: 231 AMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQL---FELGEQLHCLV 287

Query: 323 ---GIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
              G     Y+    +++      +  A  +FS ++ ++   + S+I+     G + +A+
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           +LF +M+    KPD +T  +LLSAC+  G + +G    S   +   +   +   G ++DL
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDL 406

Query: 436 LGRAGHLEESANFITSMP----------------------------------IPPDVSIW 461
             +   +E +  F                                       + P+   +
Sbjct: 407 YSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            S+LR C     + L E    H+ +T   LN     +L ++YAK G+L    RI  +L
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 146/383 (38%), Gaps = 85/383 (22%)

Query: 209 LEMGKNLHL----FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD--VV 262
           +E GK+  +    F+EE  ++ +     +L++     G + E  +L  R      D   +
Sbjct: 35  MEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPL 94

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------------ 310
           L  +LV  Y +  ++  A ++FDE   R++ SW  MI   + Q + F+            
Sbjct: 95  LIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG 154

Query: 311 -----YKSCASIGALYHGIWVHVYIKK----------------NQISID------NIELA 343
                Y     + A   G     Y+K+                  + ID       IE A
Sbjct: 155 ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             +F+ I  K++  W ++I+  +  G  ++AI LF +M  +   P      ++LSA +  
Sbjct: 215 KKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKI 274

Query: 404 GLVDEG---------YDFLSK-------------------KSRVYNIKPKMQ--HYGCMV 433
            L + G         + F S+                     R+++         Y  ++
Sbjct: 275 QLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLI 334

Query: 434 DLLGRAGHLEESANFITSMP---IPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTE 486
             L + G  + +    T M    + PD    +SLL AC      H+ ++L  HA K    
Sbjct: 335 SGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMS 394

Query: 487 TDPLNDGAHVLLANIYAKAGRLD 509
            D + +G+   L ++Y+K   ++
Sbjct: 395 ADIILEGS---LLDLYSKCADVE 414


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 191/590 (32%), Positives = 323/590 (54%), Gaps = 62/590 (10%)

Query: 111 IENQLI-NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           I  QLI NG+ Q+ F ++  L +     +KC  +    ++F    N +V  +  +I  + 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRS----CSKCHAIDYASRIFQYTHNPNVYLYTALIDGFV 123

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
           S G Y + + L S+M  + + PD   M S++ A      L  G+ +H    +  +  +  
Sbjct: 124 SSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRL 183

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           +   ++++Y KCG++G+A+++   +E    DVV  T ++S Y      +EA  +F  +  
Sbjct: 184 VRLRIMELYGKCGELGDARRV---FEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRR 240

Query: 290 RNLISWTLMISGMLNQDA-------------------EFK----YKSCASIGALYHGIWV 326
           ++ + WT MI G +  +                    EF       +C+ +GAL  G WV
Sbjct: 241 KDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWV 300

Query: 327 HVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H Y++K +I ++               +I+ A  +F E+ +++V  + ++I+  +M G +
Sbjct: 301 HSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKS 360

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
           ++AI+LF  M     +P  VTF+ +L+ACSHGGLVD G+      +R Y ++P+++HYGC
Sbjct: 361 RQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGC 420

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           MVDLLGR G LEE+ + I +M + PD  +  +LL AC+ H+N++L E   K L +    +
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQAD 480

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
            G +VLL+++YA +G+  + +++R K+++ G++K+ G S IE    +H+F  GD+ +P  
Sbjct: 481 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRK 540

Query: 552 EEIYLMLN-------------EIEMTLQ--QQGLQETSLQ-HRERLAVAFGLISTSEKTT 595
           E IY  L              E E+ LQ  + G +E +L  H ERLA+ +GLIST   T 
Sbjct: 541 ERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTV 600

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IR++ NLR+C DCHS +K+ +++  R++V+RD  RFH F+ G CSC DYW
Sbjct: 601 IRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 156/360 (43%), Gaps = 65/360 (18%)

Query: 49  RSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           ++C S   + E   +HS  +   L  +  +  ++ E     G+LG A+++  +   PE  
Sbjct: 155 KACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEE--MPEDV 212

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           + +++    +I+ Y  +                  G ++E   +F ++  +D + W  MI
Sbjct: 213 VASTV----MISSYSDQ------------------GLVEEAGAVFSRVRRKDTVCWTAMI 250

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
             +         L     M  E V P+E T+V ++SA ++L  LE+G+ +H ++ +  ++
Sbjct: 251 DGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIE 310

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           ++  + N L++MY +CG I EAQ +    E+ + DV+ + T++SG   + +  +A  LF 
Sbjct: 311 LNLFVGNALINMYSRCGSIDEAQTVFD--EMKDRDVITYNTMISGLSMNGKSRQAIELFR 368

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345
            M+ R L    +   G+LN              A  HG  V              +  + 
Sbjct: 369 VMIGRRLRPTNVTFVGVLN--------------ACSHGGLV--------------DFGFK 400

Query: 346 LFSEIS-----EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           +F  ++     E  +  +  ++      G  ++A DL   M+ T   PD +    LLSAC
Sbjct: 401 IFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMT---PDHIMLGTLLSAC 457


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 312/574 (54%), Gaps = 46/574 (8%)

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWN 162
           +++   S+ +     GY  +VF     L     L  + G + +  ++FD++P RD ++W+
Sbjct: 123 DLRGGESVRDRAFDAGYKDDVFVCSSLLH----LYARWGAMGDAVKVFDRMPRRDRVTWS 178

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
           TM++ + S G   + + +  +M  +GV  DEV M+ +I A T  R++ MG ++H  L   
Sbjct: 179 TMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRH 238

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            M++       LVDMY K G +  A ++ G   +   DV  W+ ++SG+ ++ + DEA R
Sbjct: 239 GMRMDVVTATSLVDMYAKNGLLDVACRVFG-LMVHRNDVS-WSAMISGFAQNGQSDEALR 296

Query: 283 LFDEMVERNLISWT-LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK--------N 333
           LF  M    +   +  ++S +L         +C++IG L  G  VH +I +         
Sbjct: 297 LFRNMQASGIQPDSGALVSALL---------ACSNIGFLKLGRSVHGFIVRRFDFNCILG 347

Query: 334 QISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
             +ID      ++  A  LF+ IS++++ LW ++IA     G  Q A+ LF EM ETG +
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMR 407

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD  TF +LLSA SH GLV+EG  +       + I P  +HY C+VDLL R+G +EE+++
Sbjct: 408 PDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASD 467

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
            +TSM   P V+IW +LL  C  ++ ++L E    ++ E  P + G   L++N+YA   +
Sbjct: 468 LLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKK 527

Query: 508 LDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567
            D + ++R  ++D G KK  G S IE  G  H F   D  +P  EEI   + ++++ +++
Sbjct: 528 WDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRK 587

Query: 568 QG---------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
            G               ++E  L  H E+LA+AFGL++T   T + I+ NLR+CGDCH  
Sbjct: 588 MGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDA 647

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +K  S++ +REIV+RD  RFH F+ G CSCRDYW
Sbjct: 648 IKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 186/546 (34%), Positives = 299/546 (54%), Gaps = 45/546 (8%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
            +L+N   KCG L    ++F  +  +D +SWN+MI+ Y   G + E + L  KM    V 
Sbjct: 355 NILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVK 413

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD VT V L+S  T+L DL +GK LH  L +     +  + N LVDMY KCG++G++ K+
Sbjct: 414 PDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 473

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                +   D++ W T+++  V S + +   R+   M    +   T  ++ ML+      
Sbjct: 474 F--ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV---TPDMATMLSI----- 523

Query: 311 YKSCASIGALYHGIWVHVYIKK----NQISIDNIEL-----------AYDLFSEISEKNV 355
              C+ + A   G  +H  I K    + + + N+ +           ++ +F  +  K+V
Sbjct: 524 LPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV 583

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             WT++I+A  M G  +KA+  F EME  G  PD V F+A++ ACSH GLV+EG ++  +
Sbjct: 584 VTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHR 643

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
             + Y I+P+++HY C+VDLL R+  L+++ +FI SMP+ PD SIW +LL ACR   + +
Sbjct: 644 MKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 703

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           +AE   + + E +P + G +VL++NIYA  G+ D +  IR  ++  GLKK  G S +E  
Sbjct: 704 IAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQ 763

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRE 579
             V+ F +G  F    EE+  +L  +   + ++G                 ++    H E
Sbjct: 764 NKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSE 823

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           RLA+AFGL++T   T ++++ NLR+C DCH+  K  S++  RE+++RD  RFH F+ G C
Sbjct: 824 RLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGAC 883

Query: 640 SCRDYW 645
           SC DYW
Sbjct: 884 SCGDYW 889



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 125/537 (23%), Positives = 220/537 (40%), Gaps = 110/537 (20%)

Query: 47  VERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V  +C+ + +FE    IH  ++      D  I   + +      DL  A+++  +    +
Sbjct: 121 VINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 180

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCGKLKEV-------- 146
           +  WNS+I     NGY  E   IY             T + +L  CG L  V        
Sbjct: 181 VVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHG 240

Query: 147 ---------------------CQ---------LFDKLPNRDVISWNTMISCYTSMGMYRE 176
                                C+         +FDK+  RD +SWNTMI  Y+ +G+Y E
Sbjct: 241 LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEE 300

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            + L  +M      PD +T+ S++ A   L DLE GK +H ++  S  +   +  N L++
Sbjct: 301 SIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 359

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM---VERNLI 293
           MY KCG +  +Q++    +    D V W ++++ Y+++   DEA +LF  M   V+ + +
Sbjct: 360 MYAKCGNLLASQEVFSGMKCK--DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSV 417

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----NQISIDNIEL------- 342
           ++ +++S M  Q           +G L+ G  +H  + K    + I + N  +       
Sbjct: 418 TYVMLLS-MSTQ-----------LGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCG 465

Query: 343 ----AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
               +  +F  +  +++  W ++IA+   +      + +   M   G  PD  T +++L 
Sbjct: 466 EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILP 525

Query: 399 ACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
            CS           HG +   G   L     V N+         ++++  + G L  S  
Sbjct: 526 VCSLLAAKRQGKEIHGCIFKLG---LESDVPVGNV---------LIEMYSKCGSLRNSFQ 573

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV-LLANIYA 503
               M    DV  W++L+ AC  +   K A  AF  +     + D  HV  +A I+A
Sbjct: 574 VFKLMK-TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD--HVAFVAIIFA 627



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 176/400 (44%), Gaps = 50/400 (12%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P+ +V  WN++I   T  G++ E L L S+     + PD  T  S+I+A   L D EM K
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
           ++H  + +        + N L+DMY +   + +A+K+    E+   DVV W +L+SGY  
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF--EEMPLRDVVSWNSLISGYNA 193

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA-----LYHGIWVHV 328
           +   +EA  ++       ++  +  +S +L        ++C  +G+     + HG+   +
Sbjct: 194 NGYWNEALEIYYRFRNLGVVPDSYTMSSVL--------RACGGLGSVEEGDIIHGLIEKI 245

Query: 329 YIKKNQISIDNIELAY----------DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            IKK+ I  + +   Y           +F ++  ++   W ++I  Y+  G  +++I LF
Sbjct: 246 GIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF 305

Query: 379 LEMEETGTKPDQVTFIALLSACSHGG-----------LVDEGYDFLSKKSRVYNIKPKMQ 427
           +EM     KPD +T  ++L AC H G           ++  GY+  +  S +        
Sbjct: 306 MEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNI-------- 356

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
               ++++  + G+L  S    + M     VS W+S++     + +   A   FK +   
Sbjct: 357 ----LINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMINVYIQNGSFDEAMKLFKMMKTD 411

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
              +   +V+L ++  + G L     +   L  MG    +
Sbjct: 412 VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNI 451


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 182/530 (34%), Positives = 284/530 (53%), Gaps = 42/530 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +LF  +P  D   ++++I+  +     +E L    +M    +S    T  ++I +   L 
Sbjct: 73  RLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLT 132

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
              +G+ +H  +      +   +   LV  Y K G +  A+K+  +  + E  VV W ++
Sbjct: 133 AFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDK--MPEKTVVAWNSM 190

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           +SGY ++    EA  LF  M +  +   +     +L+        +CA +GA+  G WVH
Sbjct: 191 ISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLS--------ACAQVGAIGLGFWVH 242

Query: 328 VYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            YI +N   ++               N+  A ++F  + EKN+  WT++I+ Y M GH  
Sbjct: 243 EYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGS 302

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +AI+LF EM   G +P+ VTF+A+LSAC+H GLVDEG    +   + Y + P ++H  CM
Sbjct: 303 QAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCM 362

Query: 433 VDLLGRAGHLEESANFI-TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           VD+LGRAGHL E+  FI  + P  P  ++W+++L AC+ H+N  L     +HL   +P N
Sbjct: 363 VDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPEN 422

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
            G +V+L+NIYA AGR+D + +IR  +    LKK++GYS I+    V+ F+ GD  +P +
Sbjct: 423 PGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKT 482

Query: 552 EEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTT 595
            +IYL L+E+    ++ G    S                  H E+LA+AFGL+ T     
Sbjct: 483 NQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVA 542

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IRIV NLR+C DCH+ +K  S + NREI +RD  RFH F+ G CSC+DYW
Sbjct: 543 IRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 115/293 (39%), Gaps = 61/293 (20%)

Query: 34  FANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
            AN+   +     V +S + +  F   E IH H+       D  +   +  F   +G + 
Sbjct: 111 LANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVM 170

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY----------------------- 127
            A+++  +  E  +  WNS+I     NG+ +E   ++                       
Sbjct: 171 IARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACA 230

Query: 128 ---------------------LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNT 163
                                L +V  T L+N   +CG + +  ++FD +  +++++W  
Sbjct: 231 QVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTA 290

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MIS Y   G   + + L ++M  +G  P+ VT V+++SA      ++ G+ +      +T
Sbjct: 291 MISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIF-----TT 345

Query: 224 MKISGSLLNY------LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           MK    L+        +VDM  + G + EA + +      E    +WT ++  
Sbjct: 346 MKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGA 398


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 187/550 (34%), Positives = 303/550 (55%), Gaps = 44/550 (8%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L+T  +L+N   KCG +    Q+FD++P+R ++SWNTMI   T  G   E L LL +M  
Sbjct: 99  LLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQR 158

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           EG    E T+ S++ A      L   + LH F  ++ M ++  +   L+D+Y KCG + +
Sbjct: 159 EGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKD 218

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A  +     + +  VV W+++ +GYV++   ++A  LF +  E  L     ++S ++   
Sbjct: 219 AVCVF--ESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVIC-- 274

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEIS 351
                 +CA + A+  G  ++  + K+            ID       IE +Y +F ++ 
Sbjct: 275 ------ACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           ++NV LW ++I+  +    + + + LF +M++ G  P+ VTF+++LSAC H GLV +G  
Sbjct: 329 KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQK 388

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           +    ++ +++ P + HY CMVD L RAG + E+ + I+ +P     S+W SLL +CR H
Sbjct: 389 YFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTH 448

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
            N++LAE A K L + +P N G ++LL+N+YA  G+ D+++++R  L++  +KK+ G S 
Sbjct: 449 GNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSW 508

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL 575
           IE    VH F  G+  +P   EIY  LNE+   LQ+ G                 QE   
Sbjct: 509 IEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLR 568

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LA   GL+       IRI+ NLRICGDCHSFMK+ S+ + R++++RD  RFH F+
Sbjct: 569 HHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFK 628

Query: 636 GGQCSCRDYW 645
            G CSC D+W
Sbjct: 629 NGCCSCGDFW 638



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 122/285 (42%), Gaps = 37/285 (12%)

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A+ KL  L  GK  H  +    +K      N L++MY KCG +  A+++    E+   
Sbjct: 73  LCAKRKL--LLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFD--EMPSR 128

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
            +V W T++    ++ E +EA  L  +M           IS +L         +CA+  A
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLC--------ACAAKCA 180

Query: 320 LYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNVYLWTSVIA 363
           L     +H +  K  + + N+ +A  L                F  + +++V  W+S+ A
Sbjct: 181 LSECQLLHAFAIKAAMDL-NVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAA 239

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD---FLSKKSRVY 420
            Y      ++A+ LF +  ETG K DQ    +++ AC+    + EG      LSK     
Sbjct: 240 GYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCS 299

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           NI         ++D+  + G +EES      +    +V +W++++
Sbjct: 300 NIFVASS----LIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMI 339


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 187/575 (32%), Positives = 300/575 (52%), Gaps = 44/575 (7%)

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISW 161
           PE   W   +  Q +N    +   +   L+    +   CG ++   ++FDK+  RDV+SW
Sbjct: 276 PEALAWGKAVHAQCMNTGLVDDVRVATALIR---MYMGCGSIEGARRVFDKMKVRDVVSW 332

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
             MI  Y       +  GL + M  EG+ PD +T + +I+A     DL + + +H  +  
Sbjct: 333 TVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           +       +   LV MY KCG I +A+++     +   DVV W+ ++  YV++   +EA 
Sbjct: 393 AGFGTDLLVDTALVHMYAKCGAIKDARQVFD--AMSRRDVVSWSAMIGAYVENGCGEEAF 450

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV-----------HVYI 330
             F  M   N+    +    +LN        +C  +GAL  G+ +           H+ +
Sbjct: 451 ETFHLMKRNNVEPDVVTYINLLN--------ACGHLGALDLGMEIYTQAIKADLVSHIPV 502

Query: 331 KKNQISID----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
               I+++    +IE A  +F  + +++V  W  +I  Y++ G+A++A+DLF  M +   
Sbjct: 503 GNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERF 562

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           +P+ VTF+ +LSACS  G V+EG  F S       I P M+ YGCMVDLLGRAG L+E+ 
Sbjct: 563 RPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAE 622

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             I  MP+ P+ SIWS+LL ACR + N+ +AE A +    ++P +   +V L+++YA AG
Sbjct: 623 LLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAG 682

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
             ++++++R  +   G++K+ G + IE  G +H F   D  +P + EIY  L  +   ++
Sbjct: 683 MWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIK 742

Query: 567 QQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
           ++G                 +E    H E+LA+A+G++S      IRI  NLR+CGDCHS
Sbjct: 743 REGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHS 802

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             K  S+V  REI+ RD  RFH F+ G CSC DYW
Sbjct: 803 ASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/497 (22%), Positives = 206/497 (41%), Gaps = 75/497 (15%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV---------TRTVLL 137
           G++  A+Q     +   +  WN+II      G+ +E FA++  +V         T  ++L
Sbjct: 110 GNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVL 169

Query: 138 NKC--------------------------------------GKLKEVCQLFDKLPNRDVI 159
           + C                                      G +    Q+FD L  RDV 
Sbjct: 170 DACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVS 229

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           ++N MI  Y   G   +   L  +M  EG  P+ ++ +S++   +    L  GK +H   
Sbjct: 230 TFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQC 289

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
             + +     +   L+ MY  CG I  A+++  + ++   DVV WT ++ GY +++  ++
Sbjct: 290 MNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVR--DVVSWTVMIRGYAENSNIED 347

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID- 338
           A  LF  M E  +    +    ++N        +CAS   L     +H  + +     D 
Sbjct: 348 AFGLFATMQEEGIQPDRITYIHIIN--------ACASSADLSLAREIHSQVVRAGFGTDL 399

Query: 339 --------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
                          I+ A  +F  +S ++V  W+++I AY   G  ++A + F  M+  
Sbjct: 400 LVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRN 459

Query: 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
             +PD VT+I LL+AC H G +D G +  ++  +  ++   +     ++++  + G +E 
Sbjct: 460 NVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNALINMNVKHGSIER 518

Query: 445 SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF-KHLTETDPLNDGAHVLLANIYA 503
            A +I    +  DV  W+ ++     H N + A   F + L E    N    V + +  +
Sbjct: 519 -ARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACS 577

Query: 504 KAGRLDDMSRIRMKLRD 520
           +AG +++  R    L D
Sbjct: 578 RAGFVEEGRRFFSYLLD 594



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 162/337 (48%), Gaps = 15/337 (4%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG + E  Q FD + N+ V++WN +I+ Y  +G  +E   L  +M  E + P  +T + +
Sbjct: 109 CGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIV 168

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-GRYEIDE 258
           + A +    L++GK  H  + +        +   LV MY K G +  A+++  G Y   +
Sbjct: 169 LDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLY---K 225

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMISGMLNQDA----EFK 310
            DV  +  ++ GY KS + ++A +LF  M +     N IS+  ++ G    +A    +  
Sbjct: 226 RDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAV 285

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           +  C + G L   + V   + +  +   +IE A  +F ++  ++V  WT +I  YA   +
Sbjct: 286 HAQCMNTG-LVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSN 344

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
            + A  LF  M+E G +PD++T+I +++AC+    +    +  S+  R       +    
Sbjct: 345 IEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRA-GFGTDLLVDT 403

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
            +V +  + G ++++     +M    DV  WS+++ A
Sbjct: 404 ALVHMYAKCGAIKDARQVFDAMS-RRDVVSWSAMIGA 439



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 172/401 (42%), Gaps = 77/401 (19%)

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           +L ++G      D  T V L      LRD  +GK +   + +S  +++   LN L+ ++ 
Sbjct: 48  VLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHS 107

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA----RRLFDEMVERNLISW 295
            CG + EA++      ++   VV W  +++GY +     EA    R++ DE +E ++I++
Sbjct: 108 ICGNMLEARQTFD--SVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITF 165

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NI 340
            +++             +C+S   L  G   H  + K     D               ++
Sbjct: 166 LIVLD------------ACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSM 213

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           + A  +F  + +++V  +  +I  YA +G  +KA  LF  M++ G KP++++F+++L  C
Sbjct: 214 DGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGC 273

Query: 401 S----------------HGGLVDE------------GYDFLSKKSRVYNIKPKMQ---HY 429
           S                + GLVD+            G   +    RV++ K K++    +
Sbjct: 274 STPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFD-KMKVRDVVSW 332

Query: 430 GCMVDLLGRAGHLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
             M+       ++E++     +M    I PD   +  ++ AC    ++ LA      +  
Sbjct: 333 TVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392

Query: 487 ----TDPLNDGAHVLLANIYAKAGRLDDMSRI--RMKLRDM 521
               TD L D A   L ++YAK G + D  ++   M  RD+
Sbjct: 393 AGFGTDLLVDTA---LVHMYAKCGAIKDARQVFDAMSRRDV 430


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 186/540 (34%), Positives = 289/540 (53%), Gaps = 42/540 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG + +  ++FD +P RD+ SW ++I+ Y    M  E LGLL  M      P+  T
Sbjct: 108 LYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFT 167

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             SL+ A        +G+ +H    +        + + L+DMY +CG++  A  +    +
Sbjct: 168 FASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFD--Q 225

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           ++  + V W  L++G+ +  + +    +F EM +RN    T      +       + + A
Sbjct: 226 LESKNGVSWNALIAGFARKGDGETTLLMFAEM-QRNGFEATHFTYSSV-------FSAIA 277

Query: 316 SIGALYHGIWVHVYIKKN----QISIDNIEL-----------AYDLFSEISEKNVYLWTS 360
            IGAL  G WVH ++ K+       + N  L           A  +F  + +K+V  W S
Sbjct: 278 GIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNS 337

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ A+A  G  ++A+  F EM + G   +Q+TF+++L+ACSHGGLV EG  +     + Y
Sbjct: 338 MLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM-KEY 396

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           N++P++ HY  +VDLLGRAG L ++  FI  MP+ P  ++W +LL +CR H+N K+ + A
Sbjct: 397 NLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFA 456

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
             H+ E DP + G  VLL NIYA  G+ D  +R+R  ++  G+KK+   S +E    VH 
Sbjct: 457 ADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHM 516

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVA 584
           F + D  +P SEEIY    EI + +++ G                ++  LQ H E++A+A
Sbjct: 517 FVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALA 576

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F LI+     TIRI+ N+RICGDCHS  +  S+V+ REIV+RD  RFH F  G CSC DY
Sbjct: 577 FALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 305/560 (54%), Gaps = 55/560 (9%)

Query: 129 YLVTRTVLL---NKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREG---LGLL 181
           Y+     LL    K G L +  ++F  +   RD +SWN+MI  Y   G ++EG   LGL 
Sbjct: 172 YVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAY---GQHQEGSKALGLF 228

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            +M   G++ D  T+ S+++A T L DL  G   H  L ++    +  + + L+D+Y KC
Sbjct: 229 QEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKC 288

Query: 242 GK-IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE-RDEARRLFDEM----VERNLISW 295
           G  + + +K+    EI E D+VLW T+VSGY ++ E  ++A   F +M       N  S+
Sbjct: 289 GGGMSDCRKVF--EEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSF 346

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------IELAY 344
             +IS   N        S  S G   H + +   I  N+IS+DN           ++ A 
Sbjct: 347 VCVISACSNL-------SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDAR 399

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF  ++E N     S+IA YA  G   +++ LF  M E    P  +TFI++LSAC+H G
Sbjct: 400 RLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTG 459

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
            V+EG+++ +     +NI+P+ +HY CM+DLLGRAG L E+ N I  MP  P    W+SL
Sbjct: 460 RVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASL 519

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           L ACR H N++LA  A   + + +P N   +V+L+N+YA AGR ++++ +R  +RD G+K
Sbjct: 520 LGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVK 579

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------- 570
           K+ G S IE    +H F + D  +P  +EIY  L E+   +++ G               
Sbjct: 580 KKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGT 639

Query: 571 ----QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
               +E  L  H E+LAVAFGLIST +   + +V NLRICGDCH+ +K  S +  REI +
Sbjct: 640 RGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITV 699

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F+ GQCSC DYW
Sbjct: 700 RDAHRFHCFKEGQCSCGDYW 719



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 167/374 (44%), Gaps = 46/374 (12%)

Query: 42  LDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE 101
           L   + ER  S+    + +HS  I + +      S          G L +A++  +   +
Sbjct: 15  LKTCIAERDLST---GKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISD 71

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISW 161
           P +  +N+II       Y +E         +R ++ +         QLFD++P  D++S+
Sbjct: 72  PNVFSFNAIIA-----AYAKE---------SRPLIAH---------QLFDQIPEPDLVSY 108

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           NT+IS Y   G     LGL S M   G+  D  T+ ++I+A     D+ +   LH     
Sbjct: 109 NTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVS 166

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEA 280
           S      S+ N L+  Y K G + +A+++   Y +  + D V W +++  Y +  E  +A
Sbjct: 167 SGFDSYVSVNNALLTYYGKNGDLDDAKRVF--YGMGGIRDEVSWNSMIVAYGQHQEGSKA 224

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN-QISIDN 339
             LF EMV R L      ++ +L     F      S G  +HG  +     +N  +    
Sbjct: 225 LGLFQEMVRRGLNVDMFTLASVLTA---FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGL 281

Query: 340 IEL----------AYDLFSEISEKNVYLWTSVIAAYAMAGH-AQKAIDLFLEMEETGTKP 388
           I+L             +F EI+E ++ LW ++++ Y+      + A++ F +M+  G +P
Sbjct: 282 IDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRP 341

Query: 389 DQVTFIALLSACSH 402
           +  +F+ ++SACS+
Sbjct: 342 NDCSFVCVISACSN 355



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 107/287 (37%), Gaps = 86/287 (29%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           RDL  GK+LH    +S +  S    N+ + +Y KCG++                   W  
Sbjct: 22  RDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLA------------------W-- 61

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
                        AR+ F ++ + N+ S+  +I+                          
Sbjct: 62  -------------ARKAFQDISDPNVFSFNAIIA-------------------------- 82

Query: 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
             Y K+++  I     A+ LF +I E ++  + ++I+AYA  G    A+ LF  M E G 
Sbjct: 83  -AYAKESRPLI-----AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGL 136

Query: 387 KPDQVTFIALLSACS---------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
             D  T  A+++AC          H   V  G+D     S V      + +Y       G
Sbjct: 137 DMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFD-----SYVSVNNALLTYY-------G 184

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           + G L+++      M    D   W+S++ A   HQ    A   F+ +
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM 231


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 312/574 (54%), Gaps = 46/574 (8%)

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWN 162
           +++   S+ +     GY  +VF     L     L  + G + +  ++F ++P RD ++W+
Sbjct: 123 DLRGGESVRDRAFDAGYKDDVFVCSSLLH----LYARWGAMGDAVKVFVRMPRRDRVTWS 178

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
           TM++ + S G   + + +  +M  +GV  DEV M+ +I A T  R++ MG ++H  L   
Sbjct: 179 TMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRH 238

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            M++       LVDMY K G +  A ++ G   +   DV  W+ ++SG+ ++ + DEA R
Sbjct: 239 GMRMDVVTATSLVDMYAKNGLLDVACRVFG-LMVHRNDVS-WSAMISGFAQNGQSDEALR 296

Query: 283 LFDEMVERNLISWT-LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK--------N 333
           LF  M    +   +  ++S +L         +C++IG L  G  VH +I +         
Sbjct: 297 LFRNMQASGIQPDSGALVSALL---------ACSNIGFLKLGRSVHGFIVRRFDFNCILG 347

Query: 334 QISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
             +ID      ++  A  LF+ IS++++ LW ++IA     G  Q A+ LF EM ETG +
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMR 407

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD  TF +LLSA SH GLV+EG  +  +    + I P  +HY C+VDLL R+G +EE+++
Sbjct: 408 PDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASD 467

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
            +TSM   P V+IW +LL  C  ++ ++L E    ++ E  P + G   L++N+YA   +
Sbjct: 468 LLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKK 527

Query: 508 LDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567
            D + ++R  ++D G KK  G S IE  G  H F   D  +P  EEI   + ++++ +++
Sbjct: 528 WDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRK 587

Query: 568 QG---------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
            G               ++E  L  H ERLA+AFGL++T   T + I+ NLR+CGDCH  
Sbjct: 588 MGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDA 647

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +K  S++ +REIV+RD  RFH F+ G CSCRDYW
Sbjct: 648 IKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 180/538 (33%), Positives = 289/538 (53%), Gaps = 41/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L    ++F  + ++ V SWN +I  +   G  R+ L LL +M   G  PD  T+ S
Sbjct: 397 KCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISS 456

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ A   L+ L+ GK +H ++  + ++    +   L+  Y  CGK   A+ L  R  + +
Sbjct: 457 LLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDR--MKD 514

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            ++V W  ++SGY ++    E+  LF + +   + S  + I  +        + +C+ + 
Sbjct: 515 KNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSV--------FGACSQLS 566

Query: 319 ALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIA 363
           AL  G   H Y+ K   + D                I+ +  +F  + +KNV  W ++I 
Sbjct: 567 ALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIV 626

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           A+ + GH ++AI+L+  M++ G  PD+ T+I +L AC H GLV+EG  +  +      I+
Sbjct: 627 AHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIE 686

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           PK++HY C++D+L RAG L+++   +  MP   D  IWSSLLR+CR    +++ E   K 
Sbjct: 687 PKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKK 746

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L E +P     +VLL+N+YA  G+ D + R+R  ++++GL+K  G S IE GG V+ F  
Sbjct: 747 LLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVV 806

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGL 587
           GD   P S EI ++   +E  + + G +  +                  H E+LA++FGL
Sbjct: 807 GDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGL 866

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + T++ TT+RI  NLRIC DCH+  K+ S+   REIV+RDN RFH F+ G CSC DYW
Sbjct: 867 LKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 142/284 (50%), Gaps = 27/284 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEV 194
           +  KCG + E  ++FD +P  +++SWN+MI  ++  G  R+   LL +M G EG+ PD V
Sbjct: 190 MYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVV 249

Query: 195 TMVSLISARTKLRDLEMGKNLH-----LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
           T+V+++       ++++G  +H     L L E  M     + N +V MY KCG + EAQ 
Sbjct: 250 TVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVM-----VNNAMVYMYSKCGYLNEAQ- 303

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM------VERNLISWTLMISGML 303
            +   + +  +VV W T++S +    + +EA  L  EM      ++ N ++   ++   L
Sbjct: 304 -MSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACL 362

Query: 304 NQDAEFKYKSCASI-GALYHGIWVHVYIKKNQI----SIDNIELAYDLFSEISEKNVYLW 358
           ++    + +S   + G  +   + HV +    I        +  A  +F  I +K V  W
Sbjct: 363 DK---LQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSW 419

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
            ++I  +A  G  +KA+ L  +M  +G +PD  T  +LL AC+H
Sbjct: 420 NALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 136/276 (49%), Gaps = 21/276 (7%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVS 198
           CG   +   +FD +  +++I WN ++S YT  G+Y + + +   + ++    PD  T  S
Sbjct: 92  CGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPS 151

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           +I A   + D+ +G+ +H  + +  + +   + N LV MY KCG + EA K+     + E
Sbjct: 152 VIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDF--MPE 209

Query: 259 VDVVLWTTLVSGYVKSN-ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
            ++V W +++  + ++   RD    L + + E  L+   + +  +L   A    +    I
Sbjct: 210 TNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAG---EGEVDI 266

Query: 318 GALYHGIWVHVYIKKNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYA 366
           G   HG+ V + + + ++ ++N           +  A   F + + KNV  W ++I+A++
Sbjct: 267 GMGIHGLAVKLGLSE-EVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFS 325

Query: 367 MAGHAQKAIDLFLEMEETG--TKPDQVTFIALLSAC 400
           + G   +A +L  EM+  G   K ++VT + +L AC
Sbjct: 326 LEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 140/310 (45%), Gaps = 41/310 (13%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-LVDMYFKCGKIGEAQKLLGRYEID 257
           L+ A    +D+E G+ LH F+ +ST   +  +LN  L+ MY  CG   +++ +    E  
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KS 313
             +++ W  LVSGY ++    +  ++F ++V           S    Q   F +    K+
Sbjct: 109 --NLIQWNALVSGYTRNGLYGDVVKVFMDLV-----------SDTDFQPDNFTFPSVIKA 155

Query: 314 CASI-----GALYHGIWVH------VYIKKNQISI----DNIELAYDLFSEISEKNVYLW 358
           C  I     G + HG+ +       V++    + +      ++ A  +F  + E N+  W
Sbjct: 156 CGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSW 215

Query: 359 TSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
            S+I A++  G ++ + DL +EM  E G  PD VT + +L  C+  G VD G        
Sbjct: 216 NSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAV 275

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESA-NFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           ++  +  ++     MV +  + G+L E+  +F+ +     +V  W++++ A     +V  
Sbjct: 276 KL-GLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNN--NKNVVSWNTMISAFSLEGDVN- 331

Query: 477 AEHAFKHLTE 486
              AF  L E
Sbjct: 332 --EAFNLLQE 339


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 212/688 (30%), Positives = 341/688 (49%), Gaps = 89/688 (12%)

Query: 37  VCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQII 96
           +CP++     + R    +   ++IH+ +IT+ L  +  +S  +    V+ G L  A+QI 
Sbjct: 20  LCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIF 79

Query: 97  RQGDEPEIKIWNSII-----------------ENQLINGYPQEV--------FA-IYLYL 130
                  +  W  +I                 E  + N  P  V        FA + L  
Sbjct: 80  HHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIR 139

Query: 131 VTRTV---------------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           + ++V                     + +K G +    QLF+ +  R+V+SWN ++S Y+
Sbjct: 140 IAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYS 199

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
             G   E + L + M  +G+  D  T++SLI A   +  L++G  +H F+  +  +    
Sbjct: 200 DHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKH 259

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           +   L+D+Y     + +A ++    E+   DV  WT +++G+      D A + F++M+ 
Sbjct: 260 IKTALMDIYVSHNCVDDAHRVFS--EMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLG 317

Query: 290 -RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----NQISID------ 338
            +NL   ++++ G+L+        SC+  GAL  G  VH    K    N I +       
Sbjct: 318 IQNLKLDSIVLMGILS--------SCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDM 369

Query: 339 -----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                N+E A   F  + EK+V  W ++IA   M G+   AIDLFL+M+ +G  PD+ TF
Sbjct: 370 YANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTF 429

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           +++L ACSH G+V EG        +  +  P +QHY C++D+LGRAG L+ + +FI +MP
Sbjct: 430 VSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMP 489

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
             PD  ++S+LL ACR H N+KL     + + E +P + G +VLL+N+YA AG  + +  
Sbjct: 490 FQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKM 549

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---- 569
            R  LR   LKK  G+S IE    ++ F +G+  +P   +I  +L  + + +++ G    
Sbjct: 550 TRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPN 609

Query: 570 ----LQETS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
               LQ+ S          H E++A+AFGL+ T   T IRI  NLR C DCHS  K  S+
Sbjct: 610 TNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSK 669

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           V+ R +VI+D  RFH FQ G CSCRDYW
Sbjct: 670 VFGRVLVIKDANRFHVFQDGVCSCRDYW 697


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 187/503 (37%), Positives = 283/503 (56%), Gaps = 47/503 (9%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTV--LLNKCGKLKEVCQLFDKLPNRDVISW 161
           I++ + I+ + L  G+  ++F      V+  V  LL  CG L    ++FDK   RD++SW
Sbjct: 95  IRMGSEILGHVLHLGFDSDIF------VSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSW 148

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N+MI+ Y   G   E L    +M  EG+ PDEVTM+ ++S+  +L DL++G+  H ++EE
Sbjct: 149 NSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEE 208

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY--------------EIDEVDVVLWTTL 267
           + +K++  L N L+DMY KCG +  A+KL                  E+ + DVV W  +
Sbjct: 209 NGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAM 268

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           + GYV +N   EA  LF+EM   N+    + +   L+        +C+ +GAL  GIW+H
Sbjct: 269 IGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLS--------ACSQLGALDVGIWIH 320

Query: 328 VYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            YI+K+++S++                I  A  +F E+  +N   WT++I+  A+ G+A 
Sbjct: 321 HYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAH 380

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
            AI  F EM +    PD+VTF+ LLSAC HGGLV+EG  + S+ S  +N+ PK++HY CM
Sbjct: 381 GAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCM 440

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAG LEE+   I SMPI  D  +W +L  ACR H NV + E A   L + DP + 
Sbjct: 441 VDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDS 500

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G +VLLAN+Y +A    +  + R  +R  G++K  G S IE  G V++F   D  +P SE
Sbjct: 501 GIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSE 560

Query: 553 EIYLMLNEIEMTLQQQGLQETSL 575
           +IY  L  I++T Q + ++ T +
Sbjct: 561 QIYECL--IQLTRQLELVECTPV 581



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 135/312 (43%), Gaps = 73/312 (23%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           I  H++      D  +S  V   LV  GDL  A+++  +    ++  WNS+I   +  G+
Sbjct: 101 ILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGW 160

Query: 120 PQEVFAIY--------------------------------------------LYLVTRTV 135
             E    Y                                            L +     
Sbjct: 161 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANA 220

Query: 136 LLN---KCGKLKEVCQL----------------FDKLPNRDVISWNTMISCYTSMGMYRE 176
           L++   KCG L+   +L                FD++P++DV+ WN MI  Y      +E
Sbjct: 221 LMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKE 280

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L L ++M A  ++PDEVTMVS +SA ++L  L++G  +H ++E+  + ++ +L   L+D
Sbjct: 281 ALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALID 340

Query: 237 MYFKCGKIGEA----QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
           MY KCGKI +A    Q+L GR      + + WT ++SG         A   F EM++ ++
Sbjct: 341 MYAKCGKITKAIQVFQELPGR------NSLTWTAIISGLALHGNAHGAIAYFSEMIDNSV 394

Query: 293 ISWTLMISGMLN 304
           +   +   G+L+
Sbjct: 395 MPDEVTFLGLLS 406


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 198/577 (34%), Positives = 317/577 (54%), Gaps = 60/577 (10%)

Query: 124 FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGL 180
           F +  +L    V + + C  +    ++F+ +P   RDV+SWN++IS +T  G     L  
Sbjct: 196 FGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRT 255

Query: 181 LSKMGAEGVS---PDEVTMVSLISARTKLRDLEMGKNLHLFLE--ESTMKISGSL--LNY 233
              M +EG S   P+ VT+++L+ +  +L  +E    +H ++    S++ ++  +  L  
Sbjct: 256 FEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTA 315

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV-ERNL 292
           L+DM+ +CG +  A+++     ++  +VV W+ +++GY + +  +EA RLF +M+ E N+
Sbjct: 316 LLDMHARCGNLALAREIFD--GVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNM 373

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------------- 338
           +   +  + +          +C+ +GA      +H Y     +  D              
Sbjct: 374 VGVEVKPNAVTLVSV---IAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKC 430

Query: 339 -NIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
            +IE    +FSE+ E  + V  W+S+I A  + G  ++A++LF EM   G +P+++T+I+
Sbjct: 431 GDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYIS 490

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           +LSACSH GLV++G    +   + Y + P  +HY C+VDLLGRAGHL+E+ N I +MPI 
Sbjct: 491 VLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK 550

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
            D+++W SLL AC  H N KL E   K +   D  + G HVLLAN+Y  AGR DD+ R+R
Sbjct: 551 ADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMR 610

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--LQET 573
           ++LR  GL+K  G S IE G  V+ F + D  +P SE IY  L+ ++  +++    + ET
Sbjct: 611 VELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVTET 670

Query: 574 SLQ---------------HRERLAVAFGLI----------STSEKTTIRIVNNLRICGDC 608
            L                H ERLA+AFGLI          S    T IRI  NLR+C DC
Sbjct: 671 GLNVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVCRDC 730

Query: 609 HSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           H++ K+ S+V +RE+++RD  RFH F+ G CSC DYW
Sbjct: 731 HAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 169/392 (43%), Gaps = 58/392 (14%)

Query: 138 NKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKM-------GAEG 188
            KCG      Q+FD++P  + DV+SW  +IS Y+S G   E      +M       G+E 
Sbjct: 98  GKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSEC 157

Query: 189 VSPDEVTMVSLISA---RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
              D V++ +L+SA         L  G  +H  + +    +S  L N +V MY  C  +G
Sbjct: 158 CGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVG 217

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-------VERNLISWTLM 298
            A ++     I++ DVV W +L+SG+  + E + A R F++M       VE N ++   +
Sbjct: 218 GAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIAL 277

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI-------------------DN 339
           +            KSCA +G +    WVH YI     S+                    N
Sbjct: 278 L------------KSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGN 325

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT------KPDQVTF 393
           + LA ++F  +  KNV  W+++IA Y      ++A+ LF +M   G       KP+ VT 
Sbjct: 326 LALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTL 385

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           +++++ACS  G        + K +    +    +    ++D+  + G +E      + M 
Sbjct: 386 VSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMD 444

Query: 454 IPPDVSI-WSSLLRACRCHQNVKLAEHAFKHL 484
                 + WSS++ A   H   K A   F  +
Sbjct: 445 ESTRTVVSWSSMIGAEGIHGEGKRALELFSEM 476



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 152/340 (44%), Gaps = 31/340 (9%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           + ++D   WN++I+   +    +  L   ++M A  V  +  T  +L+ A   LR L   
Sbjct: 13  ISHKDTFHWNSLIA-KNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
             +H +L    +         LVD Y KCG    A ++        VDVV WT L+S Y 
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYS 131

Query: 273 KSNERDEARRLFDEMVERNLISW---------TLMISGMLNQDAEFKYKSCASIGALYHG 323
            +   DEA + F  M  R +  W          + +  +++  A     +C   G+  HG
Sbjct: 132 SNGCVDEAFKAFGRM--RWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 324 I------WVHVYIKKNQI----SIDNIELAYDLFS--EISEKNVYLWTSVIAAYAMAGHA 371
           +       V  ++  + +    +  ++  A+ +F+   I +++V  W S+I+ + + G A
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEA 249

Query: 372 QKAIDLFLEMEETGT---KPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPK 425
           ++A+  F +M   GT   +P++VT IALL +C+  G V+     ++++S +     +   
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           +     ++D+  R G+L  +      +    +V  WS+++
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVE-GKNVVCWSAMI 348


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 305/560 (54%), Gaps = 55/560 (9%)

Query: 129 YLVTRTVLL---NKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREG---LGLL 181
           Y+     LL    K G L +  ++F  +   RD +SWN+MI  Y   G ++EG   LGL 
Sbjct: 172 YVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAY---GQHQEGSKALGLF 228

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            +M   G++ D  T+ S+++A T L DL  G   H  L ++    +  + + L+D+Y KC
Sbjct: 229 QEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKC 288

Query: 242 GK-IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE-RDEARRLFDEM----VERNLISW 295
           G  + + +K+    EI E D+VLW T+VSGY ++ E  ++A   F +M       N  S+
Sbjct: 289 GGGMSDCRKVF--EEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSF 346

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------IELAY 344
             +IS   N        S  S G   H + +   I  N+IS+DN           ++ A 
Sbjct: 347 VCVISACSNL-------SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDAR 399

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF  ++E N     S+IA YA  G   +++ LF  M E    P  +TFI++LSAC+H G
Sbjct: 400 RLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTG 459

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
            V+EG+++ +     +NI+P+ +HY CM+DLLGRAG L E+ N I  MP  P    W+SL
Sbjct: 460 RVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASL 519

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           L ACR H N++LA  A   + + +P N   +V+L+N+YA AGR ++++ +R  +RD G+K
Sbjct: 520 LGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVK 579

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------- 570
           K+ G S IE    +H F + D  +P  +EIY  L E+   +++ G               
Sbjct: 580 KKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGT 639

Query: 571 ----QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
               +E  L  H E+LAVAFGLIST +   + +V NLRICGDCH+ +K  S +  REI +
Sbjct: 640 RGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITV 699

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F+ GQCSC DYW
Sbjct: 700 RDAHRFHCFKEGQCSCGDYW 719



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 167/374 (44%), Gaps = 46/374 (12%)

Query: 42  LDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE 101
           L   + ER  S+    + +HS  I + +      S          G L +A++  +   +
Sbjct: 15  LKTCIAERDLST---GKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISD 71

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISW 161
           P +  +N+II       Y +E         +R ++ +         QLFD++P  D++S+
Sbjct: 72  PNVFSFNAIIA-----AYAKE---------SRPLIAH---------QLFDQIPEPDLVSY 108

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           NT+IS Y   G     LGL S M   G+  D  T+ ++I+A     D+ +   LH     
Sbjct: 109 NTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVS 166

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEA 280
           S      S+ N L+  Y K G + +A+++   Y +  + D V W +++  Y +  E  +A
Sbjct: 167 SGFDSYVSVNNALLTYYGKNGDLDDAKRVF--YGMGGIRDEVSWNSMIVAYGQHQEGSKA 224

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN-QISIDN 339
             LF EMV R L      ++ +L     F      S G  +HG  +     +N  +    
Sbjct: 225 LGLFQEMVRRGLNVDMFTLASVLTA---FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGL 281

Query: 340 IEL----------AYDLFSEISEKNVYLWTSVIAAYAMAGH-AQKAIDLFLEMEETGTKP 388
           I+L             +F EI+E ++ LW ++++ Y+      + A++ F +M+  G +P
Sbjct: 282 IDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRP 341

Query: 389 DQVTFIALLSACSH 402
           +  +F+ ++SACS+
Sbjct: 342 NDCSFVCVISACSN 355



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 107/287 (37%), Gaps = 86/287 (29%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           RDL  GK+LH    +S +  S    N+ + +Y KCG++                   W  
Sbjct: 22  RDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLA------------------W-- 61

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
                        AR+ F ++ + N+ S+  +I+                          
Sbjct: 62  -------------ARKAFQDISDPNVFSFNAIIA-------------------------- 82

Query: 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
             Y K+++  I     A+ LF +I E ++  + ++I+AYA  G    A+ LF  M E G 
Sbjct: 83  -AYAKESRPLI-----AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGL 136

Query: 387 KPDQVTFIALLSACS---------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
             D  T  A+++AC          H   V  G+D     S V      + +Y       G
Sbjct: 137 DMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFD-----SYVSVNNALLTYY-------G 184

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           + G L+++      M    D   W+S++ A   HQ    A   F+ +
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM 231


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 226/779 (29%), Positives = 347/779 (44%), Gaps = 180/779 (23%)

Query: 42   LDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE 101
            + ++    S  +++  + +HSH +   L  D ++   +      +G +  A+ +     E
Sbjct: 324  VSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTE 383

Query: 102  PEIKIWNSIIENQLINGYPQEVFAIYLY---------LVTRTVLLN-------------- 138
             +I  W  +I     +G  QE F+++L          L T   +LN              
Sbjct: 384  RDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVK 443

Query: 139  --------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG 172
                                      KCG + +   +FD + +RDVISWN M+      G
Sbjct: 444  VVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNG 503

Query: 173  MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
               E   +  +M  EG+ PD  T +SL++       LE    +H    E+ +     + +
Sbjct: 504  CGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGS 563

Query: 233  YLVDMYFKCGKI-----------------------GEAQKLLGR---------------- 253
              + MY +CG I                       G AQ+  GR                
Sbjct: 564  AFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIP 623

Query: 254  ----------YEIDE------------------VDVVLWTTLVSGYVKSNERDEARRLFD 285
                        +DE                  VD+ +   LV  Y K      A+++FD
Sbjct: 624  DATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFD 683

Query: 286  EMVERNLISWTLMISGM----LNQDAEFKY-------------------KSCASIGAL-- 320
            +MVERN+ +WT+MI G+       DA   +                    +CAS GAL  
Sbjct: 684  DMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEW 743

Query: 321  -----YHGI-------------WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVI 362
                  H +              VH+Y K    SID+   A  +F ++ E++V+ WT +I
Sbjct: 744  VKEVHNHAVSAGLVSDLRVGNALVHMYAKCG--SIDD---ARSVFDDMVERDVFSWTVMI 798

Query: 363  AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
               A  G   +A+D F++M+  G KP+  +++A+L+ACSH GLVDEG       ++ Y I
Sbjct: 799  GGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGI 858

Query: 423  KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
            +P M+HY CMVDLLGRAG LEE+  FI +MPI PD + W +LL AC  + N+++AE A K
Sbjct: 859  EPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAK 918

Query: 483  HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
               +  P +   +VLL+NIYA  G+ +    +R  ++  G++K+ G S IE    +H F 
Sbjct: 919  ERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFV 978

Query: 543  SGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQHR--------ERLAVAFG 586
             GD  +P S+EIY  LN++   L+ +G        L+ T  +H+        E+LA+ +G
Sbjct: 979  VGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYG 1038

Query: 587  LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            L+ T  K  IR+  NLR+C DCH+  K  S++  REIV RD  RFH F+ G CSC DYW
Sbjct: 1039 LMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 138/283 (48%), Gaps = 35/283 (12%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG+L+   Q+FDKL  +++  W TMI  Y   G   + + +  KM  E   P+E+T +S
Sbjct: 165 RCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLS 224

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A     +L+ GK +H  + +S  +    +   LV+MY KCG I +AQ +  +  + E
Sbjct: 225 ILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDK--MVE 282

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +V+ WT ++ G        EA  LF +M     I  +     +LN +        AS G
Sbjct: 283 RNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNAN--------ASAG 334

Query: 319 AL-------YHGI-------------WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLW 358
           AL        H +              VH+Y K    SID+  + +D    ++E++++ W
Sbjct: 335 ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG--SIDDARVVFD---GMTERDIFSW 389

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           T +I   A  G  Q+A  LFL+M+  G  P+  T++++L+A +
Sbjct: 390 TVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASA 432



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 135/586 (23%), Positives = 233/586 (39%), Gaps = 106/586 (18%)

Query: 28  MRISRKFANVC--PVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEF 82
           MR+  K    C  P  +  + + ++C    ++   ++IH+H+I +    D ++ T +   
Sbjct: 204 MRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNM 263

Query: 83  LVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTR 133
            V  G +  AQ I  +  E  +  W  +I      G  QE F ++L +          T 
Sbjct: 264 YVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTY 323

Query: 134 TVLLN--------------------------------------KCGKLKEVCQLFDKLPN 155
             +LN                                      K G + +   +FD +  
Sbjct: 324 VSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTE 383

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI--SARTKLRDLEMGK 213
           RD+ SW  MI      G  +E   L  +M   G  P+  T +S++  SA      LE  K
Sbjct: 384 RDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVK 443

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +H   EE+       + N L+ MY KCG I +A+ +     + + DV+ W  ++ G  +
Sbjct: 444 VVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFD--GMCDRDVISWNAMMGGLAQ 501

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--------YKSCASIGALYH--- 322
           +    EA  +F +M +  L+  +     +LN              +K     G +     
Sbjct: 502 NGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRV 561

Query: 323 -GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
              ++H+YI+    SID+  L   LF ++S ++V  W ++I   A     ++A+ LFL+M
Sbjct: 562 GSAFIHMYIRCG--SIDDARL---LFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQM 616

Query: 382 EETGTKPDQVTFIALLSA----------------CSHGGLVD--EGYDFLSKKSRVYNIK 423
           +  G  PD  TFI +LSA                 +  GLVD   G   +   S+  N+K
Sbjct: 617 QREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVK 676

Query: 424 PKMQHYGCMVD---------LLGRAGH---LEESANFITSM--PIPPDVSIWSSLLRACR 469
              Q +  MV+         + G A H    +  ++F+  +   I PD + + S+L AC 
Sbjct: 677 YAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACA 736

Query: 470 CHQNVKLAEHAFKHLTETDPLND-GAHVLLANIYAKAGRLDDMSRI 514
               ++  +    H      ++D      L ++YAK G +DD   +
Sbjct: 737 STGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSV 782



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 115/271 (42%), Gaps = 71/271 (26%)

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
           ++ + +L     +G++ D  + V+++    K  D+ + K +H+ + +S M+ +  + N L
Sbjct: 100 KDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKL 159

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           + +Y +CG++                                   AR++FD+++++N+  
Sbjct: 160 LRVYIRCGRL---------------------------------QCARQVFDKLLKKNIYI 186

Query: 295 WTLMISGM-------------------LNQDAEFKY----KSCASIGALYHGIWVHVYIK 331
           WT MI G                      Q  E  Y    K+C     L  G  +H +I 
Sbjct: 187 WTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHII 246

Query: 332 KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           ++    D               +IE A  +F ++ E+NV  WT +I   A  G  Q+A  
Sbjct: 247 QSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFH 306

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
           LFL+M+  G  P+  T++++L+A +  G ++
Sbjct: 307 LFLQMQREGFIPNSYTYVSILNANASAGALE 337



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 94/198 (47%), Gaps = 11/198 (5%)

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           I    ++ A  +F ++ +KN+Y+WT++I  YA  GHA+ A+ ++ +M +   +P+++T++
Sbjct: 164 IRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYL 223

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFIT 450
           ++L AC     +  G     KK   + I+   Q        +V++  + G +E+ A  I 
Sbjct: 224 SILKACCCPVNLKWG-----KKIHAHIIQSGFQSDVRVETALVNMYVKCGSIED-AQLIF 277

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL-NDGAHVLLANIYAKAGRLD 509
              +  +V  W+ ++     +   + A H F  +     + N   +V + N  A AG L+
Sbjct: 278 DKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE 337

Query: 510 DMSRIRMKLRDMGLKKQL 527
            +  +     + GL   L
Sbjct: 338 WVKEVHSHAVNAGLALDL 355


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 279/496 (56%), Gaps = 54/496 (10%)

Query: 118 GYPQEVF----AIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173
           G+  +VF     ++ + V+ +++L +        +LFD+ P RDV+SWNT+I  Y   G+
Sbjct: 151 GFSADVFVVNAGVHFWSVSGSMVLAR--------RLFDESPARDVVSWNTLIGGYVRSGL 202

Query: 174 YREGLGLLSKMGAEG--VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
            RE L L  ++  +G  V PDEVTM+  +S   ++ DLE+GK LH F++   ++ +  L+
Sbjct: 203 PREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLM 262

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N ++DMY KCG +  A+ +  R  ID   VV WTT++ G+ +    ++AR LFDEM ER+
Sbjct: 263 NAVMDMYVKCGSLELAKSVFER--IDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERD 320

Query: 292 LISWTLMISG------------MLNQDAEFK-----------YKSCASIGALYHGIWVHV 328
           +  W  +++G            + ++  E K             +C+ +GAL  G+WVH 
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHH 380

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           YI ++Q+ +                NI+ A  +F EI +KN   WT++I   A  GHA +
Sbjct: 381 YIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADE 440

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           AI+ F  M + G +PD++TFI +LSAC H GLV EG  F S     Y+++ KM+HY CM+
Sbjct: 441 AIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMI 500

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLLGRAGHL+E+   + +MP+ PD  +W +L  ACR H N+ L E A   L E DP + G
Sbjct: 501 DLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSG 560

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            +VLLAN+YA+A       ++R+ +R +G++K  G S IE  G VH+F   D  +  +  
Sbjct: 561 IYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIA 620

Query: 554 IYLMLNEIEMTLQQQG 569
           IY  L+ I + ++   
Sbjct: 621 IYDCLHGITLQMKHTA 636



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 158/374 (42%), Gaps = 54/374 (14%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + +I     C+ + + E   R+H  + +  +    ++   V +  V  G L  A+ +
Sbjct: 222 PDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSV 281

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
             + D   +  W ++I                           + G +++   LFD++P 
Sbjct: 282 FERIDNKTVVSWTTMIVGH-----------------------ARLGMMEDARMLFDEMPE 318

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RDV  WN +++ Y      +E + L  +M    V P+E+TMV+L+SA ++L  LEMG  +
Sbjct: 319 RDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWV 378

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           H +++   + +S +L   LVDMY KCG I +A  +    EI + + + WT ++ G     
Sbjct: 379 HHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFK--EIPDKNALTWTAMICGLANHG 436

Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
             DEA   F  M++  L    +   G+L+        +C   G           +K+ + 
Sbjct: 437 HADEAIEYFQRMIDLGLQPDEITFIGVLS--------ACCHAG----------LVKEGRQ 478

Query: 336 SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
               +   Y L     E+ +  ++ +I     AGH  +A  L   M      PD V + A
Sbjct: 479 FFSLMHEKYHL-----ERKMKHYSCMIDLLGRAGHLDEAEQLVNTMP---MDPDAVVWGA 530

Query: 396 LLSACSHGGLVDEG 409
           L  AC   G +  G
Sbjct: 531 LFFACRMHGNITLG 544



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 24/155 (15%)

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
           F  K+CA +    +G  V  +++K   S D               ++ LA  LF E   +
Sbjct: 126 FLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLFDESPAR 185

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG--TKPDQVTFIALLSACSHGGLVDEG-- 409
           +V  W ++I  Y  +G  ++A++LF  + E G   +PD+VT I  +S C+  G ++ G  
Sbjct: 186 DVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKR 245

Query: 410 -YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            ++F+  K     ++  ++    ++D+  + G LE
Sbjct: 246 LHEFVDSK----GVRCTVRLMNAVMDMYVKCGSLE 276


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 187/546 (34%), Positives = 293/546 (53%), Gaps = 49/546 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +K G  +E  ++FD++P R++ +WN  +S     G Y + L    +   EG  P+ +T
Sbjct: 152 MYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLIT 211

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             + ++A      L +G+ LH F+ +S  +   S+ N L+D Y KC ++G ++ +     
Sbjct: 212 FCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFS--G 269

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           I + + V W +++  YV+++E ++A  +F    +  +     M+S +L+        +CA
Sbjct: 270 ISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLS--------ACA 321

Query: 316 SIGALYHGIWVHVYIKKNQI------------------SIDNIELAYDLFSEISEKNVYL 357
            +  L  G  VH    K  +                  SI++ E A+D   E+ E+N+  
Sbjct: 322 GLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFD---EMPERNLVT 378

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTK--PDQVTFIALLSACSHGGLVDEGYDFLSK 415
           W ++I  YA  G A  A+ LF EM     +  P+ VTF+ +LSACS  G V+ G +    
Sbjct: 379 WNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFES 438

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
               Y I+P  +HY C+VDLLGRAG +E++  FI  MPI P VS+W +LL A +     +
Sbjct: 439 MRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE 498

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           L + A  +L E DPL+ G HVLL+N++A AGR ++ + +R +++D+G+KK  G S I  G
Sbjct: 499 LGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAG 558

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ---------------HRE 579
             VH F + D  +  + EI  ML ++   ++  G + +TS                 H E
Sbjct: 559 NAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSE 618

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           ++A+AFGLIS      IRI  NLRICGDCHS +K  S +  REI++RDN  FHRF+  QC
Sbjct: 619 KIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQC 678

Query: 640 SCRDYW 645
           SCRDYW
Sbjct: 679 SCRDYW 684



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 165/433 (38%), Gaps = 77/433 (17%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           QII+  D P      S I N L+N Y                  +K  +      L    
Sbjct: 31  QIIKTLDNP----LPSFIYNHLVNMY------------------SKLDRPNSAQLLLSLT 68

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           PNR V++W  +I+     G +   L   S M  + + P++ T      A   LR   +GK
Sbjct: 69  PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128

Query: 214 NLHLFLEESTMKISGSLLN-YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
            +H  L     +IS   +     DMY K G   EA+K+    E+ E ++  W   +S  V
Sbjct: 129 QVHA-LAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFD--EMPERNIATWNAYLSNSV 185

Query: 273 KSNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI---- 324
                D+A   F E      E NLI++       LN  A   Y     +G   HG     
Sbjct: 186 LEGRYDDALTAFIEFRHEGWEPNLITFC----AFLNACAGASY---LRLGRQLHGFVLQS 238

Query: 325 -----------WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
                       +  Y K +Q+    I     +FS IS+ N   W S+I +Y      +K
Sbjct: 239 GFEADVSVANGLIDFYGKCHQVGCSEI-----IFSGISKPNDVSWCSMIVSYVQNDEEEK 293

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG--- 430
           A  +FL   + G +P      ++LSAC+       G   L     V+ +  K    G   
Sbjct: 294 ACLVFLRARKEGIEPTDFMVSSVLSACA-------GLSVLEVGKSVHTLAVKACVVGNIF 346

Query: 431 ---CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
               +VD+ G+ G +E++      MP   ++  W++++     HQ       A   +T  
Sbjct: 347 VGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMIGG-YAHQG-----QADMAVTLF 399

Query: 488 DPLNDGAHVLLAN 500
           D +  G+H +  N
Sbjct: 400 DEMTCGSHRVAPN 412


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 190/621 (30%), Positives = 319/621 (51%), Gaps = 72/621 (11%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY-----LYLVTRTVLLN--- 138
           G +  A+       E +   WN ++   + NG  +E   ++       +++   L++   
Sbjct: 20  GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYV 79

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + GK+ E  +LFD++P RDV+SWN M+S Y   G   E   L           D  T  +
Sbjct: 80  QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR----DVFTWTA 135

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++S   +   LE  + +   + E     +    N +V  Y +   + EA++L        
Sbjct: 136 VVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMMPCR- 190

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------------L 303
            +V  W T+++GY ++   +EA+ +FD M +++ +SW  M++                 +
Sbjct: 191 -NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 249

Query: 304 NQDAEFKYKS--------CASIGALYHGIWVHVYIKKNQISID---------------NI 340
            +  E+  +S        CA I AL  G+ +H  + +    +                N+
Sbjct: 250 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNM 309

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           E A + F E+ E++V  W ++IA YA  G  ++A+++F  M  T TKPD +T + +L+AC
Sbjct: 310 EDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 369

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLV++G  +       + +  K +HY CM+DLLGRAG L E+ + +  MP  PD ++
Sbjct: 370 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 429

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           W +LL A R H+N +L   A + + E +P N G +VLL+NIYA +G+  D  ++R+ + +
Sbjct: 430 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 489

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------- 570
            G+KK  G+S IE    VH F++GD  +P  E+IY  L +++M +++ G           
Sbjct: 490 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 549

Query: 571 -----QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                +E  L+ H E+LAVA+G+++      IR++ NLR+CGDCH+  K  S +  R I+
Sbjct: 550 VEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLIL 609

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD+ RFH F+GG CSC DYW
Sbjct: 610 LRDSNRFHHFRGGSCSCGDYW 630



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 102/245 (41%), Gaps = 54/245 (22%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS------------GMLNQDA 307
           D V +  ++S +        AR  FD   E++ +SW  M++            G+ N   
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64

Query: 308 EFKYKSCASIGALY-----------------------HGIWVHVYIKKNQISIDNIELAY 344
           E+   S  ++ + Y                         I V  Y ++     D +E A 
Sbjct: 65  EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRG----DMVE-AR 119

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF     ++V+ WT+V++ YA  G  ++A  +F  M E     + V++ A+++A     
Sbjct: 120 RLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRR 175

Query: 405 LVDEGYDFLSKKSRVYNIKP--KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           ++DE  +       ++N+ P   +  +  M+    +AG LEE+     +MP    VS W+
Sbjct: 176 MMDEAKE-------LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS-WA 227

Query: 463 SLLRA 467
           ++L A
Sbjct: 228 AMLAA 232


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 312/574 (54%), Gaps = 46/574 (8%)

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWN 162
           +++   S+ +     GY  +VF     L     L  + G + +  ++F ++P RD ++W+
Sbjct: 123 DLRGGESVRDRAFDAGYKDDVFVCSSLLH----LYARWGAMGDAVKVFVRMPRRDRVTWS 178

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
           TM++ + S G   + + +  +M  +GV  DEV M+ +I A T  R++ MG ++H  L   
Sbjct: 179 TMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRH 238

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            M++       LVDMY K G +  A ++ G   +   DV  W+ ++SG+ ++ + DEA R
Sbjct: 239 GMRMDVVTATSLVDMYAKNGLLDVACRVFG-LMVHRNDVS-WSAMISGFAQNGQSDEALR 296

Query: 283 LFDEMVERNLISWT-LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK--------N 333
           LF  M    +   +  ++S +L         +C++IG L  G  VH +I +         
Sbjct: 297 LFRNMQASGIQPDSGALVSALL---------ACSNIGFLKLGRSVHGFIVRRFDFNCILG 347

Query: 334 QISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
             +ID      ++  A  LF+ IS++++ LW ++IA     G  Q A+ LF EM ETG +
Sbjct: 348 TAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMR 407

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD  TF +LLSA SH GLV+EG  +  +    + I P  +HY C+VDLL R+G +EE+++
Sbjct: 408 PDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASD 467

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
            +TSM   P V+IW +LL  C  ++ ++L E    ++ E  P + G   L++N+YA   +
Sbjct: 468 LLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKK 527

Query: 508 LDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567
            D + ++R  ++D G KK  G S IE  G  H F   D  +P  EEI   + ++++ +++
Sbjct: 528 WDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRK 587

Query: 568 QG---------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
            G               ++E  L  H ERLA+AFGL++T   T + I+ NLR+CGDCH  
Sbjct: 588 MGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDA 647

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +K  S++ +REIV+RD  RFH F+ G CSCRDYW
Sbjct: 648 IKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 294/556 (52%), Gaps = 60/556 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +L + + +   ++WN MIS Y   G Y E   LL +M + G+  DE T  S+ISA +   
Sbjct: 229 ELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAG 288

Query: 208 DLEMGKNLHLFLEESTMKISG----SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
              +G+ +H ++  + ++ SG    S+ N L+ +Y +CGK+ EA+++  +  +   D+V 
Sbjct: 289 LFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK--DLVS 346

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM------------LNQ------ 305
           W  ++SG V +   +EA  +F EM  R+L++WT+MISG+             NQ      
Sbjct: 347 WNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGL 406

Query: 306 -DAEFKYK----SCASIGALYHGIWVHVYI----KKNQISIDN-----------IELAYD 345
              ++ Y     SC+ +G+L +G  +H  I      + +S+ N           +E A  
Sbjct: 407 EPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADT 466

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  +   +   W ++IAA A  GH  +AI L+ +M +    PD++TF+ +LSACSH GL
Sbjct: 467 VFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGL 526

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           V EG  +       Y I P+  HY  ++DLL RAG   E+ N   SMP  P   IW +LL
Sbjct: 527 VKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALL 586

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
             C  H N++L   A   L E  P  DG ++ L+N+YA  G+ D+++R+R  +R+ G+KK
Sbjct: 587 AGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKK 646

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
           + G S IE    VH F   D  +P    +Y  L ++   +++ G                
Sbjct: 647 EPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQ 706

Query: 571 QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           +E +L  H E+LAV +G++      TIR+  NLRICGDCH+  K  S+V +REI++RD  
Sbjct: 707 KEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRK 766

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G+CSC +YW
Sbjct: 767 RFHHFRNGECSCSNYW 782



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 108/518 (20%), Positives = 207/518 (39%), Gaps = 110/518 (21%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+H++T+     P I  ++ +    + ++ YA+ +  +  +P+I     +    +++ Y
Sbjct: 18  VHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDI-----VAATTMLSAY 72

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREG 177
                             +  G +K   QLF+  P   RD +S+N MI+ ++        
Sbjct: 73  ------------------SAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAA 114

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVD 236
           L L  +M   G  PD  T  S++ A + + D E   + LH  + +       S+LN L+ 
Sbjct: 115 LQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMS 174

Query: 237 MYFKCGK---------IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            Y  C           +  A+KL         D   WTT+++GYV++++   AR L + M
Sbjct: 175 CYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGM 234

Query: 288 VERNLISWTLMISGMLN-------------------QDAEFKYK---SCASIGALYH-GI 324
            +   ++W  MISG ++                   Q  E+ Y    S AS   L++ G 
Sbjct: 235 TDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGR 294

Query: 325 WVHVYIKKNQI--------SIDN------------------------------------- 339
            VH Y+ +  +        S++N                                     
Sbjct: 295 QVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGC 354

Query: 340 -----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                IE A  +F E+  +++  WT +I+  A  G  ++ + LF +M+  G +P    + 
Sbjct: 355 VNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYA 414

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
             +++CS  G +D G    S+  ++ +    +     ++ +  R G +E +     +MP 
Sbjct: 415 GAIASCSVLGSLDNGQQLHSQIIQLGH-DSSLSVGNALITMYSRCGLVEAADTVFLTMPY 473

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
              VS W++++ A   H +   A   ++ + + D L D
Sbjct: 474 VDSVS-WNAMIAALAQHGHGVQAIQLYEKMLKEDILPD 510



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG ++    +F  +P  D +SWN MI+     G   + + L  KM  E + PD +T
Sbjct: 454 MYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRIT 513

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL------LNYLVDMYFKCGKIGEAQK 249
            ++++SA +    ++ G+  H F    TM++   +       + L+D+  + G   EA+ 
Sbjct: 514 FLTILSACSHAGLVKEGR--HYF---DTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKN 568

Query: 250 LLGRYEIDEVDVVLWTTLVSG-YVKSNER---DEARRLFDEMVERN 291
           +       E    +W  L++G ++  N       A RL + M +++
Sbjct: 569 VTESMPF-EPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQD 613


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 201/619 (32%), Positives = 319/619 (51%), Gaps = 96/619 (15%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQGDEPEIKI 106
           R+C S+D+ ++I S +    L  D     ++  F   +  G+L YA++I     +P + +
Sbjct: 105 RNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFV 164

Query: 107 WNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCGKLKEVCQ--------- 148
           +N +++     G  ++V  ++  L          T   +L   G L++V Q         
Sbjct: 165 YNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIV 224

Query: 149 -----------------------------LFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                                        LFD++  RD +SWN MIS Y     + + + 
Sbjct: 225 KTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAIN 284

Query: 180 LLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
              +M  EG   PDE T+VS +SA T L++LE+G  +H ++ +  +  +  + N L+DMY
Sbjct: 285 TFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE-LGFTTRIDNALLDMY 343

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KCG +  A+ +    E+   +V+ WT+++SGY+   +  EAR LFD+   R+++ WT M
Sbjct: 344 AKCGCLNIARNIFD--EMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAM 401

Query: 299 ISGMLN----QDAEFKYK-------------------SCASIGALYHGIWVHVYIKKNQI 335
           I+G +      DA   ++                    CA +GAL  G W+H Y+ +N+I
Sbjct: 402 INGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI 461

Query: 336 SID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
           ++D                ++ + ++F E+ +K+   WTS+I   AM G   +A+ LF E
Sbjct: 462 TMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSE 521

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           ME  G KPD +TFI +LSACSHGGLV+EG  F +   +V+ I+PK++HYGC++DLLGRAG
Sbjct: 522 MERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAG 581

Query: 441 HLEESANFITSMPIPPD---VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
            L+E+   I  +PI      V ++ +LL ACR H NV + E   K L   +  +   H L
Sbjct: 582 LLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTL 641

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           LANIYA   R +D  ++R K++++G+KK  G SLIE  G VH+F  GD  +P   EI  M
Sbjct: 642 LANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIEICSM 701

Query: 558 LNEIEMTLQQQGLQETSLQ 576
           LN +  T Q  GL+E+ ++
Sbjct: 702 LNRV--TGQLLGLKESQVE 718



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 120/252 (47%), Gaps = 29/252 (11%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P    V+    +C+++   E    IH++ +   L    +I   + +     G L  A+ I
Sbjct: 297 PDEATVVSTLSACTALKNLELGDEIHNY-VRKELGFTTRIDNALLDMYAKCGCLNIARNI 355

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
             +     +  W S     +I+GY                    CG L+E   LFDK P 
Sbjct: 356 FDEMSMKNVICWTS-----MISGYIN------------------CGDLREARDLFDKSPV 392

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RDV+ W  MI+ Y     + + + L  +M  + + PD+ T+V+L++   +L  LE GK +
Sbjct: 393 RDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWI 452

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           H +L+E+ + +   +   L++MY KCG + ++ ++   YE+++ D   WT+++ G   + 
Sbjct: 453 HGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIF--YELEDKDTASWTSIICGLAMNG 510

Query: 276 ERDEARRLFDEM 287
           +  EA RLF EM
Sbjct: 511 KTSEALRLFSEM 522


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 191/569 (33%), Positives = 298/569 (52%), Gaps = 59/569 (10%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM---GAEGVS 190
           T+ L+    L    +L +   N  + + N+MI  Y+      +     + +       +S
Sbjct: 50  TIALHNTTNLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLS 109

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD  T   L+    +L+    G  +H  + +   ++   +   LV MY + G +     +
Sbjct: 110 PDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNV 169

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM-------- 302
                  E D+V  T +++   K  + D AR++FDEM ER+ ++W  MI+G         
Sbjct: 170 FD--GAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSRE 227

Query: 303 --------------LNQ-DAEFKYKSCASIGALYHGIWVHVYIKKNQISID--------- 338
                         LN+        +C  +  L HG WVH Y+++ ++ +          
Sbjct: 228 ALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVD 287

Query: 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                 N++ A  +F  + E+NVY W+S I   AM G  ++++DLF +M+  G +P+ +T
Sbjct: 288 MYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGIT 347

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           FI++L  CS  GLV+EG         VY I P+++HYG MVD+ GRAG L+E+ NFI SM
Sbjct: 348 FISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSM 407

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P+ P V  WS+LL ACR ++N +L E A + + E +  NDGA+VLL+NIYA     + +S
Sbjct: 408 PMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVS 467

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-- 570
            +R  ++  G+KK  G S+IE  G VH+F  GD  +P  +EI + L EI   L+  G   
Sbjct: 468 SLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVA 527

Query: 571 -------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
                        +E +L +H E++A+AFGLIS      IR+V NLRIC DCH+  K+ S
Sbjct: 528 NTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMIS 587

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +++NREI++RD  RFH F+ G+CSC+DYW
Sbjct: 588 KIFNREIIVRDRNRFHHFKDGECSCKDYW 616


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 209/683 (30%), Positives = 334/683 (48%), Gaps = 81/683 (11%)

Query: 39   PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
            P  + V  +  +C+S+    +   +HSH I   +  D  +   + +      D+  A + 
Sbjct: 360  PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 96   IRQGDEPEIKIWN-------------------------SIIENQLINGYPQ------EVF 124
                +   I +WN                          +I NQ    YP        + 
Sbjct: 420  FLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFT--YPSILRTCTSLG 477

Query: 125  AIYL------YLVTRTVLLN------------KCGKLKEVCQLFDKLPNRDVISWNTMIS 166
            A+YL      +++     LN            K G+L    ++  +LP  DV+SW  MI+
Sbjct: 478  ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 167  CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
             Y    M+ E L L  +M   G+  D +   S ISA   +R L  G+ +H     +    
Sbjct: 538  GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 227  SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
              S+ N L+ +Y +CG+I EA   L   +I + + + W +LVSG  +S   +EA ++F  
Sbjct: 598  DLSINNALISLYARCGRIQEA--YLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVR 655

Query: 287  MV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----D 338
            M+    E N+ ++   IS   +     + +   S+  L  G      +  + IS+     
Sbjct: 656  MLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSM-VLKTGYDSEREVSNSLISLYAKSG 714

Query: 339  NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +I  A+  F+++SE+NV  W ++I  Y+  G   +A+ LF EM+  G  P+ VTF+ +LS
Sbjct: 715  SISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLS 774

Query: 399  ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
            ACSH GLV EG D+     +++++ PK +HY C+VDLLGRAG L+ +  +I  MPIP D 
Sbjct: 775  ACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADA 834

Query: 459  SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
             IW +LL AC  H+N+++ E A  HL E +P +   +VL++NIYA + +       R  +
Sbjct: 835  MIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLM 894

Query: 519  RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ-- 576
            +D G+KK+ G S IE    VH F +GD  +P + +IY  +  +     + G  + S    
Sbjct: 895  KDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLL 954

Query: 577  --------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                          H E+LA+AFGL+S      IR++ NLR+C DCH+++K  S++ NR 
Sbjct: 955  NESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRS 1014

Query: 623  IVIRDNGRFHRFQGGQCSCRDYW 645
            I++RD  RFH F GG CSC+D+W
Sbjct: 1015 IIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 168/349 (48%), Gaps = 35/349 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +K G ++   ++F+ +  +D+++W  MIS  +  G+  E + L   M A  + P    
Sbjct: 204 LYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYV 263

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S++SA TK++  E+G+ LH  + +        + N LV +Y +  K+  A+++     
Sbjct: 264 LSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS--T 321

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           ++  D V + +L+SG V+    D A  LF +M    L    + ++ +L+        +CA
Sbjct: 322 MNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLS--------ACA 373

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           S+GAL+ G+ +H +  K  +S D               ++E A+  F     +N+ LW  
Sbjct: 374 SVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNV 433

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ AY    +   + ++F +M+  G  P+Q T+ ++L  C+  G +     +L ++   +
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL-----YLGEQIHTH 488

Query: 421 NIKPKMQH--YGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            IK   Q   Y C  ++D+  + G L  +   +  +P   DV  W++++
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMI 536



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 155/347 (44%), Gaps = 27/347 (7%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
             L ++  KL    ++F  + +RD +S+N++IS     G     L L +KM  + + PD 
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           +T+ SL+SA   +  L  G  LH    ++ M     L   L+D+Y KC  +  A K    
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLT 422

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            E +  ++VLW  ++  Y + +   ++  +F +M    +I        +L        ++
Sbjct: 423 TETE--NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSIL--------RT 472

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           C S+GALY G  +H ++ K    ++                + LA  +   + E +V  W
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSW 532

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T++IA Y       +A+ LF EME  G + D + F + +SAC+    + +G   +  +S 
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQ-IHAQSY 591

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
                  +     ++ L  R G ++E+      +    ++S W+SL+
Sbjct: 592 AAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLV 637



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 174/418 (41%), Gaps = 54/418 (12%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD+  NR V SWN MI  + +     +   L  +M AEG++P+  T   ++ A     
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG-G 172

Query: 208 DLEMG--KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           D+     K +H          S  + N L+D+Y K G I  A+K+     I   D+V W 
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNC--ICMKDIVTWV 230

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH--- 322
            ++SG  ++   +EA  LF +M    +     ++S +L+   + +      +G   H   
Sbjct: 231 AMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQL---FELGEQLHCLV 287

Query: 323 ---GIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
              G     Y+    +++      +  A  +FS ++ ++   + S+I+     G + +A+
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
           +LF +M+    KPD +T  +LLSAC+  G + +G    S   +   +   +   G ++DL
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDL 406

Query: 436 LGRAGHLEESANFITSMP----------------------------------IPPDVSIW 461
             +   +E +  F  +                                    + P+   +
Sbjct: 407 YSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            S+LR C     + L E    H+ +T   LN     +L ++YAK G+L    RI  +L
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 146/383 (38%), Gaps = 85/383 (22%)

Query: 209 LEMGKNLHL----FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD--VV 262
           +E GK+  +    F+EE  ++ +     +L++     G + E  +L  R      D   +
Sbjct: 35  MEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPL 94

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------------ 310
           L  +LV  Y +  ++  A ++FDE   R++ SW  MI   + Q + F+            
Sbjct: 95  LIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG 154

Query: 311 -----YKSCASIGALYHGIWVHVYIKK----------------NQISID------NIELA 343
                Y     + A   G     Y+K+                  + ID       IE A
Sbjct: 155 ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             +F+ I  K++  W ++I+  +  G  ++AI LF +M  +   P      ++LSA +  
Sbjct: 215 KKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKI 274

Query: 404 GLVDEG---------YDFLSK-------------------KSRVYNIKPKMQ--HYGCMV 433
            L + G         + F S+                     R+++         Y  ++
Sbjct: 275 QLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLI 334

Query: 434 DLLGRAGHLEESANFITSMP---IPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTE 486
             L + G  + +    T M    + PD    +SLL AC      H+ ++L  HA K    
Sbjct: 335 SGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMS 394

Query: 487 TDPLNDGAHVLLANIYAKAGRLD 509
            D + +G+   L ++Y+K   ++
Sbjct: 395 ADIILEGS---LLDLYSKCADVE 414


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 176/540 (32%), Positives = 294/540 (54%), Gaps = 43/540 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG L+E  + F+ +   + +SWN MI+ +       E L  L KM  EG+    VT
Sbjct: 180 MYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVT 239

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            ++L+SA  +   L+  + +H  +  +       ++N +++MY KCG + +A+ +     
Sbjct: 240 YITLMSAYDQPSQLKSARYIHDCILRT--GFDQDVVNVILNMYGKCGCLQDAEAMF--KS 295

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + + DV+ W T+++ Y +     EA R ++ M E  ++        +++        +CA
Sbjct: 296 MSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVID--------ACA 347

Query: 316 SIGALYHGIWVHVYIKKNQISIDNI--------------ELAYDLFSEISEKNVYLWTSV 361
           ++G +  G  VH  +      +  +              ++A  +F + ++ +V  W ++
Sbjct: 348 TLGDMEVGKQVHRRLGDRAFQVTELANSLVNMYGKCGILDVARSIFDKTAKGSV-TWNAM 406

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I AYA   H Q+A +LFL M   G +P  +TF+++LSAC++ GL +E + +     + + 
Sbjct: 407 IGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHG 466

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           ++P   HYGCMV+ LG+AG L ++   I  MP  PDV  W+S L  CR H ++K  + A 
Sbjct: 467 VRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAA 526

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           K     DP     +V LA I+A AG   + SRIR  + D G++K  G S+I+ G  V++F
Sbjct: 527 KGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEF 586

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------QETSL--QHRERLAVAF 585
           T+GD  NP S+EI+  L  ++  +++ G               Q+  L   H ERLA+AF
Sbjct: 587 TAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAF 646

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           G+ISTS+ T +RI+ NLR+CGDCH+  K+TS++  REI++RD+ RFH F+ G CSC+D+W
Sbjct: 647 GIISTSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 140/293 (47%), Gaps = 17/293 (5%)

Query: 128 LYLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +Y+    V++  KCG L+E   +F+  P ++V SW  +I+     G  +E L L  +M  
Sbjct: 69  VYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLK 128

Query: 187 EGVSPDEVTMVSLISARTKLRD-LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
           +G+ P  V+  + I+A +   + L  G+ LH  L     + +      LV MY KCG + 
Sbjct: 129 QGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLE 188

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM-ISGMLN 304
           E+ K      + E++ V W  +++ + +     EA R   +M    + + ++  I+ M  
Sbjct: 189 ESVKTF--ESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSA 246

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISI--------DNIELAYDLFSEISEKNVY 356
            D   + KS   I    H   +     ++ +++          ++ A  +F  +S+ +V 
Sbjct: 247 YDQPSQLKSARYI----HDCILRTGFDQDVVNVILNMYGKCGCLQDAEAMFKSMSQPDVI 302

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
            W ++IAAY+  GH  +A+  +  M+E G  PD  T+++++ AC+  G ++ G
Sbjct: 303 AWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVG 355



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 21/183 (11%)

Query: 305 QDAEFK-----YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAY 344
           +DA+ K      +SCA +GAL  G  +H  I++  +  D               ++E A 
Sbjct: 30  KDADLKECVRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEAR 89

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F     KNV+ WT +I   A  G +Q+A+ LF EM + G +P  V+F A ++ACS G 
Sbjct: 90  LVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGP 149

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
                   L    R Y  +  +     +V +  + G LEES     SM     VS W+++
Sbjct: 150 EFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVS-WNAM 208

Query: 465 LRA 467
           + A
Sbjct: 209 IAA 211



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 158/362 (43%), Gaps = 40/362 (11%)

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           V +I +  +L  L  G+ +H  +    +     + N+LV MY KCG + EA+ +      
Sbjct: 38  VRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVF--EAT 95

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN---QDAEFKYKS 313
              +V  WT L++   +     EA  LF EM+++ +   ++  +  +N      EF   +
Sbjct: 96  PAKNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEF-LPA 154

Query: 314 CASIGALY--HGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
             ++ AL   +G    V    + +S+     ++E +   F  ++E N   W ++IAA+A 
Sbjct: 155 GRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAE 214

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDFLSKK 416
                +A+    +M   G +   VT+I L+SA             H  ++  G+D     
Sbjct: 215 HRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFD----- 269

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
             V N+         ++++ G+ G L+++     SM   PDV  W++++ A   H +   
Sbjct: 270 QDVVNV---------ILNMYGKCGCLQDAEAMFKSMS-QPDVIAWNTMIAAYSQHGHTSE 319

Query: 477 AEHAFKHLTETDPL-NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK-KQLGYSLIEQ 534
           A   ++ + E   + +D  +V + +  A  G ++   ++  +L D   +  +L  SL+  
Sbjct: 320 ALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVTELANSLVNM 379

Query: 535 GG 536
            G
Sbjct: 380 YG 381


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 300/545 (55%), Gaps = 45/545 (8%)

Query: 135 VLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           +L+N   KCG L    ++F  +  +D +SWN+MI+ Y   G + E + L  KM    V P
Sbjct: 415 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKP 473

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D VT V L+S  T+L DL +GK LH  L +     +  + N LVDMY KCG++G++ K+ 
Sbjct: 474 DSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVF 533

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
               +   D++ W T+++  V S + +   R+   M    +   T  ++ ML+       
Sbjct: 534 E--NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV---TPDMATMLSI-----L 583

Query: 312 KSCASIGALYHGIWVHVYIKK----NQISIDNIEL-----------AYDLFSEISEKNVY 356
             C+ + A   G  +H  I K    + + + N+ +           ++ +F  +  K+V 
Sbjct: 584 PVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVV 643

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            WT++I+A  M G  +KA+  F EME  G  PD V F+A++ ACSH GLV+EG ++  + 
Sbjct: 644 TWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRM 703

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            + Y I+P+++HY C+VDLL R+  L+++ +FI SMP+ PD SIW +LL ACR   + ++
Sbjct: 704 KKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEI 763

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
           A+   + + E +P + G +VL++N+YA  G+ D +  IR  ++  GLKK  G S +E   
Sbjct: 764 AQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQN 823

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRER 580
            V+ F +G  F+   EE+  +L  +   + ++G                 ++    H ER
Sbjct: 824 KVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSER 883

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFGL++T   T ++++ NLR+C DCH+  K  S++  RE+++RD  RFH F+ G CS
Sbjct: 884 LAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACS 943

Query: 641 CRDYW 645
           C DYW
Sbjct: 944 CGDYW 948



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 125/531 (23%), Positives = 221/531 (41%), Gaps = 98/531 (18%)

Query: 47  VERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V  +C+ + +FE    IH  ++      D  I   + +      DL  A+++  +    +
Sbjct: 180 VINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 239

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCGKLKEV-------- 146
           +  WNS+I     NGY  E   IY             T + +L  CG L  V        
Sbjct: 240 VVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHG 299

Query: 147 ---------------------CQ---------LFDKLPNRDVISWNTMISCYTSMGMYRE 176
                                C+         +FDK+  RD +SWNTMI  Y+ +G+Y E
Sbjct: 300 LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEE 359

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            + L  +M      PD +T+ S++ A   L DLE GK +H ++  S  +   +  N L++
Sbjct: 360 SIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 418

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM---VERNLI 293
           MY KCG +  +Q++    +    D V W ++++ Y+++   DEA +LF  M   V+ + +
Sbjct: 419 MYAKCGNLLASQEVFSGMKCK--DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSV 476

Query: 294 SWTLMIS-----GMLNQDAEFKYKSCASIG----ALYHGIWVHVYIKKNQISIDNIELAY 344
           ++ +++S     G L    E  +   A +G     +     V +Y K  ++  D+++   
Sbjct: 477 TYVMLLSMSTQLGDLXLGKEL-HCDLAKMGFNSNIVVSNTLVDMYAKCGEMG-DSLK--- 531

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS--- 401
            +F  +  +++  W ++IA+   +      + +   M   G  PD  T +++L  CS   
Sbjct: 532 -VFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLA 590

Query: 402 --------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
                   HG +   G   L     V N+         ++++  + G L  S      M 
Sbjct: 591 AKRQGKEIHGCIFKLG---LESDVPVGNV---------LIEMYSKCGSLRNSFQVFKLMK 638

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV-LLANIYA 503
              DV  W++L+ AC  +   K A  AF  +     + D  HV  +A I+A
Sbjct: 639 -TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD--HVAFVAIIFA 686



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 175/400 (43%), Gaps = 50/400 (12%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P+ +V  WN++I   T  G++ E L L S+     + PD  T  S+I+A   L D EM K
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
           ++H  +          + N L+DMY +   + +A+K+    E+   DVV W +L+SGY  
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFE--EMPLRDVVSWNSLISGYNA 252

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA-----LYHGIWVHV 328
           +   +EA  ++       ++  +  +S +L        ++C  +G+     + HG+   +
Sbjct: 253 NGYWNEALEIYYRFRNLGVVPDSYTMSSVL--------RACGGLGSVEEGDIIHGLIEKI 304

Query: 329 YIKKNQISIDNIELAY----------DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            IKK+ I  + +   Y           +F ++  ++   W ++I  Y+  G  +++I LF
Sbjct: 305 GIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF 364

Query: 379 LEMEETGTKPDQVTFIALLSACSHGG-----------LVDEGYDFLSKKSRVYNIKPKMQ 427
           +EM     KPD +T  ++L AC H G           ++  GY+  +  S +        
Sbjct: 365 MEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNI-------- 415

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
               ++++  + G+L  S    + M     VS W+S++     + +   A   FK +   
Sbjct: 416 ----LINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMINVYIQNGSFDEAMKLFKMMKTD 470

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
              +   +V+L ++  + G L     +   L  MG    +
Sbjct: 471 VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNI 510


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 180/545 (33%), Positives = 302/545 (55%), Gaps = 53/545 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMV 197
           KCG   +  ++FD++  +D++ W  MI+ Y       E L L  KM  E G+  D + +V
Sbjct: 4   KCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIAVV 63

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S+ SA  +L D++    +H +    ++     + N ++ M+ KCG   +A+ +     + 
Sbjct: 64  SVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDM--MM 121

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL----ISWTLMISGMLNQDAEFKYKS 313
           E DV+ W +++SGY ++ +  EA  LFDEM + +     ++  +M+S            +
Sbjct: 122 ERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVS------------A 169

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEI--SEKNVY 356
           CA +G  + G   H +I  +++ ID               ++E A DLF+ I  +E+N  
Sbjct: 170 CAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAG 229

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W  +I+ Y M GH ++A++LF  M+E G +P+  TF ++LSACSH GL+DEG    ++ 
Sbjct: 230 SWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEM 289

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            R+ ++  + +H+ C+VD+LGRAG L+E+ + I  MP PP   +W +LL AC+ H N++L
Sbjct: 290 KRL-SVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMEL 348

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
            + A  +L + +P + G +VL++NIYA + +  ++ ++R  +++ GLKK   +S+IE G 
Sbjct: 349 GKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGK 408

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRER 580
            +  F + D  NP+  E+Y  +  + + ++  G                +E  L  H E+
Sbjct: 409 DILGFHTADQENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEK 468

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LAVAFG++       IR+  NLR+C DCHS  K  S +Y R+I++RD  RFH FQGG CS
Sbjct: 469 LAVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCS 528

Query: 641 CRDYW 645
           C+DYW
Sbjct: 529 CKDYW 533


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 186/567 (32%), Positives = 295/567 (52%), Gaps = 68/567 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +     +F+++  +  + WN MIS Y   GM  E   L  +M  E V  DE T  S++
Sbjct: 242 GDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 201 SARTKLRDLEMGKNLHL--------FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           SA         GK++H         F+ E+ + ++    N LV +Y KCG I  A+++  
Sbjct: 302 SACANAGFFAHGKSVHGQITRLQPNFVPEAALPVN----NALVTLYSKCGNIAVARRIFD 357

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDA- 307
              +   DVV W T++SGYV+S+  D+A  +F+EM  +N +SW +M+SG ++    +DA 
Sbjct: 358 --NMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDAL 415

Query: 308 --------------EFKY----KSCASIGALYHGIWVHVYI-----KKNQISIDNIELAY 344
                         ++ Y     +C  +G+L HG  +H ++     + +  + + +   Y
Sbjct: 416 KLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMY 475

Query: 345 DLFSEISEKNVYL----------WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                + E N+            W ++I+A    GH ++A++LF  M   G  PD+++F+
Sbjct: 476 ARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFL 535

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +L+AC+H GLVDEG+ +     R + I P   HY  ++DLLGRAG + E+ + I +MP 
Sbjct: 536 TVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPF 595

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            P  SIW ++L  CR   +++L  HA   L +  P +DG ++LL+N Y+ AGR  D +R+
Sbjct: 596 EPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARV 655

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---- 570
           R  +RD G+KK+ G S IE G  VH F  GD  +P + ++Y  L  +   +++ G     
Sbjct: 656 RKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDT 715

Query: 571 ------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                       +     H ERLAV FGL+      T+ ++ NLRIC DCH+ M   S+ 
Sbjct: 716 KVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKA 775

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
             REIV+RD  RFH F+ G+CSC +YW
Sbjct: 776 VGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/465 (22%), Positives = 189/465 (40%), Gaps = 92/465 (19%)

Query: 38  CPVSLDVIMVERSCSS---IDEFERIHSHLITTNLMR---DPQISTQVFEFLVFTGDLGY 91
           C V L  +   RS +S   +     +H+ L+T+ L+     P ++ ++      +GDL  
Sbjct: 18  CSVLLRRLAASRSLTSSSFLRALRCLHARLLTSALLHAPPHPHLTLRLIHLYTLSGDLPA 77

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFD 151
           A  + R    P       +    L+  Y                     G+L      FD
Sbjct: 78  AATLFRADPCP-------VAATSLVAAY------------------AAAGRLPAAVSFFD 112

Query: 152 KLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRD 208
            +P   RD +  N +IS Y         + +   + A G + PD+ +  +L+SA   L +
Sbjct: 113 AVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPN 172

Query: 209 LEMGKNLHLFLEESTMKISG----SLLNYLVDMYFKCGKI---GEAQKLLGRYEIDEVDV 261
           + +     L  + S +K       S+ N LV +Y KC  +    +A+K+L   E+ + D 
Sbjct: 173 ISVRHCAQL--QCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLD--EMPDKDA 228

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA-------------- 307
           + WTT+V GYV+  +   AR +F+E+  +  + W  MISG ++                 
Sbjct: 229 LTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLE 288

Query: 308 -----EFKYKS----CASIGALYHGIWVHVYIKKNQISI-------------------DN 339
                EF + S    CA+ G   HG  VH  I + Q +                     N
Sbjct: 289 RVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGN 348

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           I +A  +F  +  K+V  W ++++ Y  +    KA+++F EM       ++++++ ++S 
Sbjct: 349 IAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK----NELSWMVMVSG 404

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
             HGG  ++     ++  R  ++KP    Y   +   G  G L+ 
Sbjct: 405 YVHGGFSEDALKLFNRM-RAEDVKPCDYTYAGAISACGELGSLKH 448



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 25/206 (12%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
           G++  A++I       ++  WN+I+     +GY +                + C  L + 
Sbjct: 347 GNIAVARRIFDNMKSKDVVSWNTIL-----SGYVE----------------SSC--LDKA 383

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
            ++F+++P ++ +SW  M+S Y   G   + L L ++M AE V P + T    ISA  +L
Sbjct: 384 VEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGEL 443

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
             L+ GK LH  L +   + S S  N L+ MY +CG + EA  +     +  +D V W  
Sbjct: 444 GSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMF--LVMPNIDSVSWNA 501

Query: 267 LVSGYVKSNERDEARRLFDEMVERNL 292
           ++S   +     EA  LFD MV   +
Sbjct: 502 MISALGQHGHGREALELFDRMVAEGI 527


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/546 (34%), Positives = 296/546 (54%), Gaps = 44/546 (8%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
            VL+N   KCG ++   Q+FD +  R ++SWNTMI  YT   M  E L +  +M  EG  
Sbjct: 100 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
             E T+ S++SA     D    K LH    ++ + ++  +   L+D+Y KCG I +A ++
Sbjct: 160 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQV 219

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                + +   V W+++V+GYV++   +EA  L+      +L      +S ++       
Sbjct: 220 FE--SMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVIC------ 271

Query: 311 YKSCASIGALYHGIWVHVYIKKNQI---------SID------NIELAYDLFSEISEKNV 355
             +C+++ AL  G  +H  I K+           ++D      ++  +Y +FSE+ EKN+
Sbjct: 272 --ACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNL 329

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
            LW ++I+ +A     ++ + LF +M++ G  P++VTF +LLS C H GLV+EG  F   
Sbjct: 330 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 389

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
               Y + P + HY CMVD+LGRAG L E+   I S+P  P  SIW SLL +CR ++N++
Sbjct: 390 MRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLE 449

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           LAE A + L E +P N G HVLL+NIYA   + +++++ R  LRD  +KK  G S I+  
Sbjct: 450 LAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIK 509

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRE 579
             VH F+ G+  +P   EI   L+ + +  ++ G                 +E  +QH E
Sbjct: 510 DKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSE 569

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           +LA+ FGL+   E + +RI+ NLRIC DCH FMK  S    R I++RD  RFH F  G C
Sbjct: 570 KLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHC 629

Query: 640 SCRDYW 645
           SC D+W
Sbjct: 630 SCGDFW 635



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 130/310 (41%), Gaps = 53/310 (17%)

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRY-EID-EVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           +L++ ++ +  + G + EA+   G+   ID E DV L   L++ Y K    + AR++FD 
Sbjct: 62  NLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDG 121

Query: 287 MVERNLISWTLMIS----------------GMLNQDAEFKYKSCASI--------GAL-- 320
           M+ER+L+SW  MI                  M N+  +F   + +S+         AL  
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC 181

Query: 321 --YHGIWVHVYIKKN----------QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
              H + V   I  N                I+ A  +F  + +K+   W+S++A Y   
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 241

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPK 425
            + ++A+ L+   +    + +Q T  +++ ACS+   + EG   +  + K     N+   
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVA 301

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
                  VD+  + G L ES   I S     ++ +W++++     H   K     F+ + 
Sbjct: 302 SS----AVDMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQ 356

Query: 486 ETDPLNDGAH 495
           +     DG H
Sbjct: 357 Q-----DGMH 361


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 181/474 (38%), Positives = 268/474 (56%), Gaps = 64/474 (13%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLL----GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           L N ++  Y   G++ EA+K+     GR      D+V W T++ GY    +   AR +FD
Sbjct: 118 LCNVMLAAYVARGEVAEARKVFDGMSGR------DLVSWNTMIHGYAVRGDVGMAREIFD 171

Query: 286 EMVERNLISWTLMIS----GMLNQDAEFKYK-------------------SCASIGALYH 322
              +R+  SW+ MIS    G  +++A   ++                   +C+++GAL  
Sbjct: 172 GTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAI 231

Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  VH +++ N++ +D               +IE +  +F  +  K+V  W+S+I   A 
Sbjct: 232 GAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLAN 291

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G    A+ LF EM   G +P+++TFI +L AC+H GLV++G  + S  S V+ + P+M+
Sbjct: 292 HGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRME 351

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HYGCMVDLLGRAGH+EE+   I SM   PD  IW +LL ACR H+NV++AE A   L   
Sbjct: 352 HYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVL 411

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           DPL DG +VLL+NIYA+A   + ++ +R  +R   +++  G S IE    VH+F SGD  
Sbjct: 412 DPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRS 471

Query: 548 NPHSEEIYLMLNEIEMTLQQQGLQE-TSL---------------QHRERLAVAFGLISTS 591
           +P  EEIY ML E+   L+Q G +  TSL               +H E+LA+AFGL+ T 
Sbjct: 472 HPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTP 531

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            ++T+RI  NLR C DCHS +K+ S  Y+R++++RD  RFH F  GQCSC+DYW
Sbjct: 532 ARSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 142/330 (43%), Gaps = 51/330 (15%)

Query: 71  RDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL 130
           RD  +   +    V  G++  A+++       ++  WN++I    + G            
Sbjct: 114 RDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRG------------ 161

Query: 131 VTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
                     G  +E+   FD   +RD  SW++MIS Y      +E L L  +M   GV+
Sbjct: 162 --------DVGMAREI---FDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVA 210

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD ++MVS++SA + +  L +G  +H F+E + +++   L   LVDMY KCG I  + K+
Sbjct: 211 PDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKV 270

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                +   DV+ W++++ G        +A  LF EM+ + L    +   G+L       
Sbjct: 271 FHAMPVK--DVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVL------- 321

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
             +C  +G +  G       KK   S+ ++                 +  ++     AGH
Sbjct: 322 -IACTHVGLVNDG-------KKYFSSMSDVHGVVPRMEH--------YGCMVDLLGRAGH 365

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
            ++A++L   M     KPD + +  LL AC
Sbjct: 366 VEEAMELIRSMT---FKPDPIIWRTLLGAC 392


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/569 (32%), Positives = 298/569 (52%), Gaps = 64/569 (11%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEV 194
           +  KCG +++   LF++LP+RD ISW ++++      +    L +   M   +G+ PD  
Sbjct: 47  MYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHY 106

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
               L+ A   L  ++ GK +H     S +     + + LVDMY KCG        +GR 
Sbjct: 107 VFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPD-----IGRV 161

Query: 255 EIDEV---DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD----- 306
             D +   + + WT ++SGY +S  + +A +LF +M  +NL+SWT +ISG++        
Sbjct: 162 VFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDS 221

Query: 307 ----AEFKYK---------------SCASIGALYHGIWVHVYI----KKNQISIDN---- 339
                E + K               + A++  L  G  +H  +     ++ + + N    
Sbjct: 222 FYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVD 281

Query: 340 -------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                  +  A  +F  + ++++  WTS+I   A  G A++A+ L+  M  TG KP++VT
Sbjct: 282 MYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVT 341

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           F+ L+ ACSH GLV +G  F +   + Y I P +QHY C++DLL R+GHLEE+ N I +M
Sbjct: 342 FVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAM 401

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P  PD + W++LL AC  H+N  +      HL    P +   ++LL+NIYA A   + +S
Sbjct: 402 PFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVS 461

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-- 570
           ++R  +  M +KK+ GYS I  G     F +G+  +P  EEI+ +L E++  ++++G   
Sbjct: 462 KVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIP 521

Query: 571 -----------QETSLQ---HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
                      QE   Q   H ERLAVA+GL+       + IV NLR+CGDCH+ +K  S
Sbjct: 522 DTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFIS 581

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +  REIV+RD  R+H F+ G+CSC ++W
Sbjct: 582 IIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 176/402 (43%), Gaps = 74/402 (18%)

Query: 8   PQLTETIFEPKLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITT 67
           P LT ++F     + GL P   +       C +            ++ + +++H+  I +
Sbjct: 85  PHLTLSMFPAMFKQDGLQPDHYVFACLVKACAI----------LGAMKQGKQVHATFIVS 134

Query: 68  NLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFA 125
            +  D  + + + +     G  D+G   +++       I   NSI    +I+GY Q    
Sbjct: 135 PVSDDDVVKSSLVDMYAKCGLPDIG---RVVFD----SISSKNSISWTAMISGYAQS--- 184

Query: 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
                          G+  +  QLF K+P ++++SW  +IS     G + +   L  +M 
Sbjct: 185 ---------------GRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMR 229

Query: 186 AEGVS-PDEVTMVSLISARTKLRDLEMGKNLH----LFLEESTMKISGSLLNYLVDMYFK 240
           ++G+   D   + S+I A   L  L +GK +H    L   ES++ +S    N LVDMY K
Sbjct: 230 SKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVS----NALVDMYAK 285

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           C  +  A+K+ GR  + + D+V WT+++ G  +    +EA  L++ M+   L    +   
Sbjct: 286 CSDVLAAKKIFGR--MVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFV 343

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTS 360
           G++         +C+ +G +  G +    + K+          Y +   +       +T 
Sbjct: 344 GLI--------YACSHVGLVSKGRYFFNSMIKD----------YGINPSLQH-----YTC 380

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           ++   + +GH ++A +L   M     KPD+ T+ ALLSAC+H
Sbjct: 381 LLDLLSRSGHLEEAENLIKAMP---FKPDEATWAALLSACNH 419



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 29/243 (11%)

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V  + A  + +   +GK LH  + ++ +    SL N L++MY KCG I +A  L    +
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFN--Q 63

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D + W ++++   ++N       +F  M +++ +     +   L        K+CA
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACL-------VKACA 116

Query: 316 SIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTS 360
            +GA+  G  VH     + +S D++               ++   +F  IS KN   WT+
Sbjct: 117 ILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTA 176

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA-CSHGGLVDEGYDFLSKKSRV 419
           +I+ YA +G    AI LF +M       + +++ AL+S     G  VD  Y F+  +S+ 
Sbjct: 177 MISGYAQSGRKLDAIQLFQKMPVK----NLLSWTALISGLVQSGNWVDSFYLFMEMRSKG 232

Query: 420 YNI 422
            +I
Sbjct: 233 IDI 235


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 190/585 (32%), Positives = 303/585 (51%), Gaps = 88/585 (15%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE----------- 187
           KC K+ E  ++F+ +  +DV+SWN M++ Y+ +G +   L L   M  E           
Sbjct: 281 KCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSA 340

Query: 188 ------------------------GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
                                   G+ P+ VT+ SL+S    +  L  GK  H ++ ++ 
Sbjct: 341 VIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNI 400

Query: 224 MKISGS-------LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
           + ++ +       +LN L+DMY KC     A+ +    E  + +VV WT ++ GY +  E
Sbjct: 401 LNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGE 460

Query: 277 RDEARRLFDEMVERNLI----SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
            ++A +LF ++ ++       ++TL  + M          +CA +G L  G  +H Y  +
Sbjct: 461 ANDALKLFAQIFKQKTSLKPNAFTLSCALM----------ACARLGELRLGRQLHAYALR 510

Query: 333 NQ----------ISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           N+            ID      +I+ A  +F  +  +NV  WTS++  Y M G  ++A+ 
Sbjct: 511 NENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALH 570

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF +M++ G   D +TF+ +L ACSH G+VD+G  +     + + I P  +HY CMVDLL
Sbjct: 571 LFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLL 630

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG L E+   I +M + P   +W +LL A R H N++L E+A   LTE    NDG++ 
Sbjct: 631 GRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYT 690

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+N+YA A R  D++RIR  ++  G++K+ G S I+       F  GD  +P SE+IY 
Sbjct: 691 LLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYN 750

Query: 557 MLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLISTSEKTTIRIVN 600
           +L ++   ++  G + +TS                +H E+LAVA+G+++T+    IRI  
Sbjct: 751 LLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHK 810

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLRICGDCHS +   S + + EIV+RD+ RFH F+ G CSCR YW
Sbjct: 811 NLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 204/464 (43%), Gaps = 67/464 (14%)

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR-- 156
           G+ P ++   S+      NG    VF       +   +  +CG L +  Q+FD++  R  
Sbjct: 138 GEIPSLRHGASVHAIVCANGLGSNVFICN----SIVAMYGRCGALDDAHQMFDEVLERKI 193

Query: 157 -DVISWNTMISCYTSMGMYREGLGLLSKMGAE---GVSPDEVTMVSLISARTKLRDLEMG 212
            D++SWN++++ Y   G  R  L +  +MG      + PD +T+V+++ A   +  L+ G
Sbjct: 194 EDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHG 253

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K +H F   + +     + N LV MY KC K+ EA K+     I + DVV W  +V+GY 
Sbjct: 254 KQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVF--EGIKKKDVVSWNAMVTGYS 311

Query: 273 KSNERDEARRLFDEMVERNL----ISWTLMISGMLNQDAEFK------------------ 310
           +    D A  LF  M E ++    I+W+ +I+G   +   F+                  
Sbjct: 312 QIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVV 371

Query: 311 -----YKSCASIGALYHGIWVHVYIKKNQISID----------------------NIELA 343
                   CAS+GAL +G   H Y+ KN ++++                      +  +A
Sbjct: 372 TLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVA 431

Query: 344 YDLFSEI--SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSA 399
             +F  I   +KNV  WT +I  YA  G A  A+ LF ++  ++T  KP+  T    L A
Sbjct: 432 RSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMA 491

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           C+  G +  G    +   R  N    +    C++D+  ++G ++ +     +M +   VS
Sbjct: 492 CARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS 551

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
            W+SL+     H   + A H F  + +     DG   L+  +YA
Sbjct: 552 -WTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVV-LYA 593



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 144/343 (41%), Gaps = 73/343 (21%)

Query: 139 KCGKLKEVCQLFDKL--PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           +CG   E   L  +L   +  V  WN +I     +G+  + LG   +M   G  PD  T 
Sbjct: 71  ECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTF 130

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
             ++ A  ++  L  G ++H  +  + +  +  + N +V MY +CG + +A ++      
Sbjct: 131 PFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMF----- 185

Query: 257 DEV------DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
           DEV      D+V W ++++ YV+  +   A R+   M     +        ++N      
Sbjct: 186 DEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVN-----I 240

Query: 311 YKSCASIGALYHGIWVHVY-----------------------------------IKKNQI 335
             +CAS+ AL HG  VH +                                   IKK  +
Sbjct: 241 LPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDV 300

Query: 336 -----------SIDNIELAYDLFSEISEKNVYL----WTSVIAAYAMAGHAQKAIDLFLE 380
                       I + + A  LF  + E+++ L    W++VIA YA  GH  +A+D+F +
Sbjct: 301 VSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQ 360

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           M+  G +P+ VT  +LLS C+  G +  G     K++  Y IK
Sbjct: 361 MQLYGLEPNVVTLASLLSGCASVGALLYG-----KQTHAYVIK 398



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 45/238 (18%)

Query: 190 SPDEVTMVSLISARTKLRDLEMGKN---LHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           SP  + ++SL+     L + ++      +H F E         + +Y V  Y +CG   E
Sbjct: 27  SPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTE---------MFSYAVGAYIECGASAE 77

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A  LL R       V  W  L+   VK    D+    + +M             G L   
Sbjct: 78  AVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRL----------GWLPDH 127

Query: 307 AEFKY--KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSE 349
             F +  K+C  I +L HG  VH  +  N +  +                ++ A+ +F E
Sbjct: 128 YTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDE 187

Query: 350 ISEK---NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT---KPDQVTFIALLSACS 401
           + E+   ++  W S++AAY   G ++ A+ +   M    +   +PD +T + +L AC+
Sbjct: 188 VLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/542 (33%), Positives = 293/542 (54%), Gaps = 49/542 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G L+   +LFD++P R+V +WN M++  T+ G+  E LG    M  EG+ PDE  + S
Sbjct: 12  KNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGS 71

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L      LRD+  G+ +H ++  S +     + + L  MY +CG + + +  L    +  
Sbjct: 72  LFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAAL--RALPS 129

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSC 314
           +++V   T +SG  ++ + + A   F  M    VE N +++   ++            SC
Sbjct: 130 LNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVT------------SC 177

Query: 315 ASIGALYHGIWVHVYIKKNQIS--IDNIELAYDLFS-------------EISEKNVYLWT 359
           + + AL  G  +H    K  +   +  +     ++S             E S  ++ L +
Sbjct: 178 SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCS 237

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I+AY   GH QKA+ LF +M   G +P++VTF+ LL ACSH GL DEG +     ++ 
Sbjct: 238 AMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKT 297

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           Y ++P ++HY C+VDLLGR+G L E+ + I SMP+ PD  IW +LL AC+  +   +AE 
Sbjct: 298 YGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAER 357

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
             + + E DP +  ++VLL+NI A + R +D+S++R  +R+  ++K+ G S +E  G +H
Sbjct: 358 IAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIH 417

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAV 583
           +F +GD  +    EI   L E+   ++Q G                +E SL  H E+LA+
Sbjct: 418 QFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAI 477

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AF  +S  E   IR++ NLR+C DCH  +K+ S+V  REIV+RD  RFH F+ G+CSC D
Sbjct: 478 AFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGD 537

Query: 644 YW 645
           YW
Sbjct: 538 YW 539



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 111/261 (42%), Gaps = 44/261 (16%)

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN------------------- 304
           W  L+ GYVK+ + + AR+LFDEM  RN+ +W  M++G+ N                   
Sbjct: 3   WNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGM 62

Query: 305 QDAEFK----YKSCASIGALYHGIWVHVYIKKNQISID---NIELAY------------D 345
           Q  E+     ++ CA +  +  G  VH Y+ ++ +  D      LA+             
Sbjct: 63  QPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEA 122

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
               +   N+    + I+     G A+ A++ F  M   G + + VTF++ +++CS    
Sbjct: 123 ALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAA 182

Query: 406 VDEGYDF--LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           + +G     L+ K+ V  + P M     +V +  R G L +S           D+ + S+
Sbjct: 183 LAQGQQIHALAIKTGVDKVVPVMTS---LVHMYSRCGCLGDSERVCLEYS-GTDLVLCSA 238

Query: 464 LLRACRCHQNVKLAEHAFKHL 484
           ++ A   H + + A   FK +
Sbjct: 239 MISAYGFHGHGQKAVGLFKQM 259



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG L +  ++  +    D++  + MIS Y   G  ++ +GL  +M A G  P+EVT
Sbjct: 211 MYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVT 270

Query: 196 MVSLISA--RTKLRDLEMGKNLHLF-LEESTMKISGSLLNY--LVDMYFKCGKIGEAQKL 250
            ++L+ A   + L+D    + ++ F L   T  +  S+ +Y  +VD+  + G + EA+ L
Sbjct: 271 FLTLLYACSHSGLKD----EGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDL 326

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           +    + + D V+W TL+S      + D A R+ + ++E
Sbjct: 327 ILSMPV-QPDGVIWKTLLSACKTQKKFDMAERIAERVIE 364


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/544 (34%), Positives = 289/544 (53%), Gaps = 33/544 (6%)

Query: 130 LVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           L T+ V L   CG +    +LFD +P R+V  WN +I  Y   G +   + L   M   G
Sbjct: 99  LATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYG 158

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           V PD  T    + A   L DLE G+ +H  +  +       +   LVDMY KCG + +A+
Sbjct: 159 VEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDAR 218

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
            +  R  +   D V+W ++++ Y ++    EA  L  +M    +      I+ +++  + 
Sbjct: 219 AVFDRIRVR--DSVVWNSMIAAYGQNGRPMEALSLCRDMAANGV---GPTIATLVSTISA 273

Query: 309 FKYKSCASIGALYHGI-WVHVYIKKNQISIDNIEL---------AYDLFSEISEKNVYLW 358
               +    G   HG  W   + +++++    +++         A  LF ++ ++ +  W
Sbjct: 274 AADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSW 333

Query: 359 TSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
            ++I  Y M GH  +A+ LF +M  E    PD +TF+ +LSAC+HGG+V E  +F     
Sbjct: 334 NAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMV 393

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
            VY+IKP +QH+ C+VD+LG AG  EE+ + I  MP+ PD  IW +LL  C+ H+NV+L 
Sbjct: 394 DVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELG 453

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E A + L E +P + G +VLL+NIYA++G+ +  +R+R  + + GLKK +G S IE  G 
Sbjct: 454 ELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGK 513

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERL 581
            H F  GD  +P S EIY  L  +E  +   G    ++                 H ERL
Sbjct: 514 THGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERL 573

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AFGLIST   T + +  NLR+C DCH  +K+ SQ+  REI+IRD  R+H F  G+CSC
Sbjct: 574 AIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSC 633

Query: 642 RDYW 645
           +DYW
Sbjct: 634 KDYW 637



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 138/356 (38%), Gaps = 45/356 (12%)

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S++ +    R L  G+ LH  L  S +     L   LVD+Y  CG +G A++L     + 
Sbjct: 67  SVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFD--GMP 124

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVE-----RNLISWTLMISGMLNQDAEFKYK 312
           + +V LW  L+  Y +    + A +L+  MV+      N      + +     D E   +
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 313 SCASIGALYHG--IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
               +   + G  ++V   +         ++ A  +F  I  ++  +W S+IAAY   G 
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDFLSK-KSR 418
             +A+ L  +M   G  P   T ++ +SA +           HG     G+D   K K+ 
Sbjct: 245 PMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTS 304

Query: 419 VYN------------------IKPKMQHYGCMVDLLGRAGHLEESANFITSM----PIPP 456
           + +                  +K ++  +  M+   G  GH +E+      M     + P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTP 364

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH--VLLANIYAKAGRLDD 510
           D   +  +L AC     VK A+  F  + +   +         L ++   AGR ++
Sbjct: 365 DNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEE 420


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/567 (33%), Positives = 296/567 (52%), Gaps = 65/567 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL---SKMGAEGVSPDEVTMV 197
           G L     +FD++ N   + +N++I  YT  G        L   ++M   G+  D  T+ 
Sbjct: 126 GDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLP 185

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            ++ +   L  + MG+ +H       ++    +   L+DMY KCG IG+A+KL  +  + 
Sbjct: 186 FVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVR 245

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG---------------- 301
             D+  W  L++GY+K  E   A  LF+ M  RN++SWT MISG                
Sbjct: 246 --DMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDE 303

Query: 302 MLNQDAEFK---------YKSCASIGALYHGIWVHVYIKKNQISIDN------------- 339
           ML   +E K           +CA   AL  G  +H +     + +++             
Sbjct: 304 MLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKC 363

Query: 340 -----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                    +D+ ++ + KN+  W ++I AYA  G   +A+ +F  M   G +PD VTF+
Sbjct: 364 YSLVEARCCFDMIAQ-NGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFM 422

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            LLS CSH GL+D G +  +    +++++P+++HY C+VDLLGRAG L E+   I+ MP+
Sbjct: 423 GLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPM 482

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
               S+W +LL ACR H+N+++AE A + L   +P N G +VLL+N+YA+AG  +++ ++
Sbjct: 483 QAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKL 542

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQET 573
           R  L+  G+KK  G S IE  G  H F   D  +P ++EIY  L  +   ++  G + +T
Sbjct: 543 RALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDT 602

Query: 574 SL---------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
           S                 H E+LA+AFGL++T     +R+  NLRICGDCH+  K  S++
Sbjct: 603 SFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKI 662

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
           Y REI++RD  RFH F+ G CSC DYW
Sbjct: 663 YEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 122/264 (46%), Gaps = 32/264 (12%)

Query: 47  VERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V +SC+ +        +H   +   L  D  +   + +  V  G +G A+++  +    +
Sbjct: 187 VLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRD 246

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           +  WN+     LI GY +E                  G++     LF+++ +R+++SW  
Sbjct: 247 MASWNA-----LIAGYMKE------------------GEIGVAEDLFERMEHRNIVSWTA 283

Query: 164 MISCYTSMGMYREGLGLLSKMGAEG--VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           MIS YT  G   + LGL  +M  +G  + P+ VT+VS++ A  +   LE G+ +H F   
Sbjct: 284 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 343

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
             + ++ S+   L  MY KC  + EA+        +  +++ W T+++ Y       EA 
Sbjct: 344 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 403

Query: 282 RLFDEM----VERNLISWTLMISG 301
            +F+ M    V+ + +++  ++SG
Sbjct: 404 SIFENMLRAGVQPDAVTFMGLLSG 427


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 287/537 (53%), Gaps = 60/537 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     +FD++   +   WNTMI  Y++     E L L   M    V  +  T   L+
Sbjct: 66  GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLL 125

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A + +  LE  + +H  + +          N L+++Y K G I  A+ L      D+VD
Sbjct: 126 KACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF-----DQVD 180

Query: 261 VVLWTTLVSGYVKSNERD-EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
                          +RD EA  LF  M    +    + +   L        ++CA +G 
Sbjct: 181 ---------------QRDTEALNLFHRMQTAGIKLDNVALVSTL--------QACADLGV 217

Query: 320 LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G W+H YIKK++I ID               ++E A ++F ++ EK V +WT++I+ 
Sbjct: 218 LDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISG 277

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           YA+ G  ++A++ F++M+  G +P+Q+TF  +L+ACSH GLV E         R++  KP
Sbjct: 278 YAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 337

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            ++HYGCMVDLLGRAG L+E+   I +MP+ P+ +IW +LL AC  H N++L +   K L
Sbjct: 338 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKIL 397

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            + DP + G ++ LA+I+A AG  +  +R+R ++++ G+ K  G S+I   G  H+F +G
Sbjct: 398 IQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAG 457

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERLAVAFGLI 588
           D  +P  +EI  ML +I   L+++G +                     H E+LAV FGLI
Sbjct: 458 DESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLI 517

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ST    TIRIV NLR+C DCH+ +K+ S+VY REI++RD  RFH F+ G C+C DYW
Sbjct: 518 STKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 176/398 (44%), Gaps = 77/398 (19%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGDLGYAQQIIRQGDEPEIKI 106
           + CS+++E  +IH  ++ T L+ D   ++++  F     +G L YA+ +  +   P   +
Sbjct: 26  QRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFM 85

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV---------LLNKCGK---LKEVCQLFDKLP 154
           WN++I     +  P+E   +Y +++  +V         LL  C     L+E  Q+   + 
Sbjct: 86  WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHII 145

Query: 155 ----NRDVISWNTMISCYTSMGMYR--------------EGLGLLSKMGAEGVSPDEVTM 196
                 ++ + N++++ Y+  G  +              E L L  +M   G+  D V +
Sbjct: 146 KMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEALNLFHRMQTAGIKLDNVAL 205

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           VS + A   L  L+ GK +H ++++  ++I   L   L+DMY KCG + EA ++  + E 
Sbjct: 206 VSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME- 264

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGM----LNQDAE 308
            E  V +WT ++SGY       EA   F +M    VE N +++T +++      L  +A+
Sbjct: 265 -EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 323

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
             ++S   I    HG          + SI++     DL                     A
Sbjct: 324 LLFESMERI----HGF---------KPSIEHYGCMVDLLGR------------------A 352

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-HGGL 405
           G  ++A +L   +E    KP+   + ALL+AC  HG L
Sbjct: 353 GLLKEAEEL---IENMPVKPNAAIWGALLNACHIHGNL 387


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/528 (36%), Positives = 290/528 (54%), Gaps = 40/528 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           + F+  P +   +W+++ISC+    +    L  L KM A  + PD+  + S   +   L 
Sbjct: 71  RAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILS 130

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
             ++GK++H    ++       + + LVDMY KCG+I  A+K+    E+   +VV W+ +
Sbjct: 131 RCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFD--EMPLRNVVTWSGM 188

Query: 268 VSGYVKSNERDEARRLFDEMVERNLI----SWTLMISGMLN--------QDAEFKYKSCA 315
           + GY +  E +EA  LF E +  NL     S++ +IS   N        Q      KS  
Sbjct: 189 MYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSF 248

Query: 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
              +      V +Y K       ++E AY +F E+  +N+ +W +++ A A   H QK I
Sbjct: 249 DSSSFVGSSLVSLYSK-----CGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVI 303

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--YDFLSKKSRVYNIKPKMQHYGCMV 433
           +LF  M+ +G KP+ +TF+ +L+ACSH GLVDEG  Y  L K+SR   I+P  +HY  +V
Sbjct: 304 ELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFDLMKESR---IEPTDKHYASLV 360

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           D+LGRAG LEE+   +T+MPI P  S+W +LL +C  H+N +LA  A   + E  P++ G
Sbjct: 361 DMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSG 420

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            H+ L+N YA  GR +D ++ R  LRD G KK+ G S +E+   VH F +G+  +  S+E
Sbjct: 421 MHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSKE 480

Query: 554 IYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIR 597
           IY  L E+   +++ G                  +T   H ERLA+AFGLI+      IR
Sbjct: 481 IYEKLAELGEEMEKAGYVADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIR 540

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++ NLR+CGDCH+ +K  S    R I++RDN RFHRF+ G+CSC DYW
Sbjct: 541 VMKNLRVCGDCHNAIKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 1/165 (0%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG L+   Q+FD++P R++  WN M+         ++ + L  +M   G+ P+ +T
Sbjct: 261 LYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFIT 320

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            +++++A +    ++ GK     ++ES ++ +      LVDM  + GK+ EA +++    
Sbjct: 321 FLNVLNACSHAGLVDEGKYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMP 380

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           ID  + V W  L++        + A    D++ E   +S  + IS
Sbjct: 381 IDPTESV-WGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHIS 424


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 294/543 (54%), Gaps = 39/543 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG++ E   +F+ +P R++ISWN MI+ YT  G   + L L  KM   G   DE T
Sbjct: 117 MYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFT 176

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTM--KISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
             S + A + L  ++ G  +H FL        ++ ++   L+D+Y KCGK+  A+++   
Sbjct: 177 FTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSH 236

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
             I+E  V+ WT L+ GY +     E+  LF ++ E ++     ++S M+   A+F   +
Sbjct: 237 --IEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADF---A 291

Query: 314 CASIGALYHGIWVHVYIKKNQISIDN-----------IELAYDLFSEISEKNVYLWTSVI 362
               G   H   + V      IS+ N           I  A  LFSE+  +NV  WT +I
Sbjct: 292 LVQQGKQMHAFAIKV-PSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMI 350

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             Y   G  ++AI LF EM+   T+PD VT++A+L  CSH GLV++G ++ S+    + I
Sbjct: 351 TGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGI 410

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           K +++HY CMVDLLGRAG L+E+ N + SMP+  +V IW +LL ACR H +++L +    
Sbjct: 411 KARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGG 470

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L   D  N   +V+++NIYA AG   +  RIR  ++   LKK+ G S +E    VH F 
Sbjct: 471 ILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFY 530

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQ------------GLQETSLQ-----HRERLAVAF 585
            GD  +P +E+I+ +L E+E  ++++             ++E S       H E+LA+  
Sbjct: 531 GGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGL 590

Query: 586 GLISTS---EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
            L+       +  IR+  NLR+CGDCH F+K  S++     V+RD  RFHRF+ G CSCR
Sbjct: 591 ALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCR 650

Query: 643 DYW 645
           DYW
Sbjct: 651 DYW 653



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 180/383 (46%), Gaps = 49/383 (12%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
           V+  KCG+L   C +FD++  R+V+SW  ++  +   G   E L L SKMG  GV P++ 
Sbjct: 15  VMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDF 74

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  + + A   L  L++G+ +H    ++   +   + N ++DMY KCG+I EA  +   +
Sbjct: 75  TFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACM---F 131

Query: 255 EIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY-- 311
           E+  V +++ W  +++GY  +   ++A  LF +M E         + G L+   EF +  
Sbjct: 132 EVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQE---------VGGFLD---EFTFTS 179

Query: 312 --KSCASIGALYHGIWVHVYIKKNQ-----------------ISIDNIELAYDLFSEISE 352
             K+C+ +GA+  G  +H ++                     +    + +A  +FS I E
Sbjct: 180 TLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEE 239

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           K+V  WT++I  YA  G+  ++++LF ++ E+  + D     +++   +   LV +G   
Sbjct: 240 KHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQG--- 296

Query: 413 LSKKSRVYNIK----PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
             K+   + IK      +     ++D+  + G + E+    + MP    +S W+ ++   
Sbjct: 297 --KQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVIS-WTVMITGY 353

Query: 469 RCHQNVKLAEHAFK--HLTETDP 489
             H   K A   F    L  T+P
Sbjct: 354 GKHGLGKEAIRLFDEMQLDSTEP 376



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 44/275 (16%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM--------------------- 298
           D++L   L+  Y K      A  +FD M++RN++SWT +                     
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 299 ISGMLNQDAEF--KYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IE 341
           +SG+   D  F    K+C  +  L  G  +H    K    + N               I 
Sbjct: 66  LSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRIN 125

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  +F  +  +N+  W ++IA Y +AG  +KA+ LF +M+E G   D+ TF + L ACS
Sbjct: 126 EAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACS 185

Query: 402 HGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
             G + EG   + FL     +Y++   +   G ++DL  + G L  +    + +     +
Sbjct: 186 DLGAIKEGNQIHAFLITGGFLYSVNTAVA--GALIDLYVKCGKLFMARRVFSHIEEKHVI 243

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           S W++L+       N+  +   F+ L E+    DG
Sbjct: 244 S-WTALILGYAQEGNLAESMELFRQLRESSIQVDG 277


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 193/561 (34%), Positives = 303/561 (54%), Gaps = 66/561 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G+L +   LFD++P  DV+S+NT++ C+ + G       L + M    V+    +  +++
Sbjct: 63  GRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVA----SWNTMV 118

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSL-LNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           S  +K   +E  K + L      M +  S+  N +V  +   G +  A++   R   ++ 
Sbjct: 119 SGLSKSGAVEEAKVVFL-----AMPVRNSVSWNAMVSGFACSGDMSTAEEWF-RNAPEKE 172

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKYKS-- 313
           D VLWT +VSGY+      +A + F+ M  RNL+SW  +++G +      DA   +++  
Sbjct: 173 DAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 232

Query: 314 ------------------CASIGALYHGIWVHVYIKKNQISID---------------NI 340
                             C+++ AL  G  +H +  K  +S +               ++
Sbjct: 233 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDL 292

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
             A  LF E+  ++V  W ++I+ YA  G  ++AI+LF  M++ G +P+ +TF+ +L+AC
Sbjct: 293 SSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTAC 352

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
            H GL D G         +Y I+P++ HY CMVDLL RAG LE + +FI SMP  P  S 
Sbjct: 353 IHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSA 412

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           + +LL ACR ++N++ AE A   L E DP + GA+V LANIYA A + DD+SR+R  ++D
Sbjct: 413 YGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKD 472

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----------- 569
             + K  GYS IE  G +H+F S D  +P    I+  L ++   +++ G           
Sbjct: 473 NTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHD 532

Query: 570 LQETS-----LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
           + ET      ++H E+LA+AFGLIST+   T+RI  NLR+CGDCH+  KV S + +REI+
Sbjct: 533 VDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREII 592

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD  RFH F+GG CSC DYW
Sbjct: 593 LRDTTRFHHFRGGHCSCDDYW 613



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L   C LF ++  RDV++WN MIS Y   G  +E + L  +M  EGV P+ +T V 
Sbjct: 288 KCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVV 347

Query: 199 LISA 202
           +++A
Sbjct: 348 VLTA 351


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 299/573 (52%), Gaps = 87/573 (15%)

Query: 136 LLNKCGKLKE--VCQLFDKLPNRDVISWNTMISCYT--------SMGMYREGLGLLSKMG 185
           LLN   K        +F+ +PN  +  +NT+IS  T        +  +Y   L       
Sbjct: 43  LLNTSSKFASTYAFTIFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILT------ 96

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHL----FLEESTMK-ISGSLLNYLVDMYFK 240
            + + P+  T  SL  A      L+ G  LH     FL+      +  SLLN+    Y K
Sbjct: 97  HKTLQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNF----YAK 152

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD-------------EARRLFDEM 287
            GK+  ++ L    +I E D+  W T+++ Y +S                 EA  LF +M
Sbjct: 153 YGKLCVSRYLFD--QISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDM 210

Query: 288 ----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---- 339
               ++ N ++   +IS            +C+++GAL  G W H Y+ +N + ++     
Sbjct: 211 QLSQIKPNEVTLVALIS------------ACSNLGALSQGAWAHGYVLRNNLKLNRFVGT 258

Query: 340 -----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                      + LA  LF E+S+++ + + ++I  +A+ GH  +A++L+  M+     P
Sbjct: 259 ALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVP 318

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D  T +  + ACSHGGLV+EG +       V+ ++PK++HYGC++DLLGRAG L+E+   
Sbjct: 319 DGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEER 378

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           +  MP+ P+  +W SLL A + H N+++ E A KHL E +P   G +VLL+N+YA  GR 
Sbjct: 379 LQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRW 438

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
           +D+ R+RM ++D G+ K  G+SL+E  G +H+F +GD  +P S+EIY  + EI   L + 
Sbjct: 439 NDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEY 498

Query: 569 GLQETSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G +  + +                H ERLA+AF LI++S    IRI+ NLR+CGDCH+  
Sbjct: 499 GHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAIT 558

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K+ S  Y R+I++RD  RFH F+ G CSC DYW
Sbjct: 559 KLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 303/576 (52%), Gaps = 63/576 (10%)

Query: 130 LVTRTVL--LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA- 186
           L++ T+L    KCG + +  QLFD++PNRD +SW ++++ +    + R  L +L+ M   
Sbjct: 39  LLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTH 98

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           +G+ PD      ++ A + L  L +GK +H     S       + + L+DMY KCG+  E
Sbjct: 99  DGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDE 158

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+ +     I   + V WT+++SGY +S  + EA  LF +   RNL SWT +ISG++ Q 
Sbjct: 159 ARAVFD--SILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLI-QS 215

Query: 307 AEFKYK-------------------------SCASIGALYHGIWVH-----------VYI 330
               Y                           CA++  L  G  +H           ++I
Sbjct: 216 GHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFI 275

Query: 331 KKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
               + +     +I  A D+F  +  K+V  WTS+I   A  G A++A+ L+ EM  +  
Sbjct: 276 SNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRI 335

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           KP++VTF+ LL ACSH GLV  G +     +  Y+I P +QHY C++DLL R+GHL+E+ 
Sbjct: 336 KPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAE 395

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
           N +  +P  PD   W+SLL AC  H N+++       + +  P +   ++LL+N+YA A 
Sbjct: 396 NLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAE 455

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN-PHSEEIYLMLNEIEMTL 565
               +S++R  +  M ++K+ GYS I+ G     F +G+  + P   EI  +L +++  +
Sbjct: 456 MWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEM 515

Query: 566 QQQGL-------------QETSLQ---HRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
           +++G              QE   Q   H ERLAVA+GL+     T IRIV NLRICGDCH
Sbjct: 516 RKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCH 575

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + +K  S +  REI++RD  R+H F+ G+CSC D+W
Sbjct: 576 NVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 49/223 (21%)

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           LH  + ++    S  L N L+D+Y KCG I +A +L    E+   D V W ++++ + K+
Sbjct: 25  LHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFD--EMPNRDHVSWASILTAHNKA 82

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDA----EFKY----KSCASIGALYHGIWV 326
                       ++ R  +S   M++ M   D      F +    ++C+S+G L  G  V
Sbjct: 83  ------------LIPRRTLS---MLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQV 127

Query: 327 HVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H     +    D +               + A  +F  I  KN   WTS+I+ YA +G  
Sbjct: 128 HARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRK 187

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
            +A+DLFL+        +  ++ AL+S     GL+  G+   S
Sbjct: 188 CEAMDLFLQ----APVRNLFSWTALIS-----GLIQSGHGIYS 221


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 191/608 (31%), Positives = 312/608 (51%), Gaps = 63/608 (10%)

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
           +++  E  I     +   +L +  P+     +  ++T  V  +     +EV   F+ +  
Sbjct: 195 VKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREV---FEAMVE 251

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
               +WN MIS Y   G ++E L L  KM   G+  D++T  ++ISA   +   +MGK +
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQV 311

Query: 216 HLFLEESTMKISGSLL----NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           H ++ ++ +  + S      N L+ +Y K  K+ EA+K+   Y +   +++ W  ++SGY
Sbjct: 312 HAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF--YAMPVRNIITWNAILSGY 369

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLN-------------------QDAEFKYK 312
           V +   +EA+  F+EM  +NL++ T+MISG+                     +  +F + 
Sbjct: 370 VNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFA 429

Query: 313 ----SCASIGALYHGIWVHVYI----KKNQISIDN-----------IELAYDLFSEISEK 353
               +C+ +GAL +G  +H  +     ++ +S+ N           +E A  +F  +   
Sbjct: 430 GALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSV 489

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           ++  W S+IAA    GH  KAI+LF +M + G  PD++TF+ +L+ACSH GLV++G  + 
Sbjct: 490 DLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYF 549

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           +     Y I P   HY  MVDL  RAG    +   I SMP  P   +W +LL  CR H N
Sbjct: 550 NSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGN 609

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
           + L   A + L +  P NDG +VLL+NIYA  GR ++++++R  +RD  ++K+   S IE
Sbjct: 610 MDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIE 669

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-H 577
               VH F   D  +P    +Y  L ++ + +++ G                +E +L  H
Sbjct: 670 VENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTH 729

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            E+LAV FG++      T+R+  N+RICGDCH+  K  S+V  REI++RD  RFH F+ G
Sbjct: 730 SEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNG 789

Query: 638 QCSCRDYW 645
            CSCRDYW
Sbjct: 790 DCSCRDYW 797



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 109/493 (22%), Positives = 205/493 (41%), Gaps = 112/493 (22%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+H+I +          ++ E    + +L YA+Q+  +   P+     +I    LI  Y
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPD-----AIARTTLITAY 89

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREG 177
                                G L+   ++F+  P   RD + +N MI+ Y   G     
Sbjct: 90  C------------------ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSA 131

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTK-LRDLEMGKNLHLFLEESTMK-ISGSLLNYLV 235
           L L   M  +   PD+ T  S++SA    + + +    +H  + ++ M  +S S+LN L+
Sbjct: 132 LELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALL 191

Query: 236 DMYFK--------CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            +Y K        C  +  A+KL    E+ + D + WTT+++GYV++++ + AR +F+ M
Sbjct: 192 SVYVKRASELGISCSAMVSARKLFD--EMPKRDELTWTTMITGYVRNDDLNGAREVFEAM 249

Query: 288 VERNLISWTLMISGMLN----QDA---------------EFKY----KSCASIGALYHGI 324
           VE    +W  MISG ++    Q+A               +  Y     +CA++G+   G 
Sbjct: 250 VENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGK 309

Query: 325 WVHVYIKKNQ--------ISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAY 365
            VH YI KN+        +S+ N           ++ A  +F  +  +N+  W ++++ Y
Sbjct: 310 QVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGY 369

Query: 366 AMAGHAQKA-------------------------------IDLFLEMEETGTKPDQVTFI 394
             AG  ++A                               + LF +M   G +P    F 
Sbjct: 370 VNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFA 429

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
             L+ACS  G ++ G    ++   +   +  +     M+ +  + G +E + +   +MP 
Sbjct: 430 GALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMISMYAKCGVVEAAESVFVTMP- 487

Query: 455 PPDVSIWSSLLRA 467
             D+  W+S++ A
Sbjct: 488 SVDLVSWNSMIAA 500


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 200/657 (30%), Positives = 329/657 (50%), Gaps = 79/657 (12%)

Query: 37   VCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
             CP    +  V + CS  +  +    +H+ ++   +  D  +   + +  +      YA+
Sbjct: 386  ACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAE 445

Query: 94   QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
            ++    +E ++  WN +I   L                       + G +++   +F +L
Sbjct: 446  RLFELMNEGDVVSWNIMIGAYL-----------------------RAGDVEKSLDMFRRL 482

Query: 154  PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
            P +DV+SWNT++      G  R  L  L  M   G     VT    +   + L  +E+G+
Sbjct: 483  PYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGR 542

Query: 214  NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID--------------EV 259
             LH  + +      G + + LV+MY KCG++ +A  +L    +D              + 
Sbjct: 543  QLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKA 602

Query: 260  DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
             +V W ++VSGYV + + ++  + F  MV   ++     ++ +++        +CA+ G 
Sbjct: 603  GIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIIS--------ACANAGI 654

Query: 320  LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
            L  G  VH Y++K    ID               +++ A+ +F + +E N+ +WTS+I+ 
Sbjct: 655  LEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISG 714

Query: 365  YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            YA+ G    AI LF EM   G  P++VTF+ +L+ACSH GL++EG  +       Y I P
Sbjct: 715  YALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINP 774

Query: 425  KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
             ++H   MVDL GRAGHL ++ NFI    I    S+W S L +CR H+NV++ +   + L
Sbjct: 775  GVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEML 834

Query: 485  TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
             +  P + GA+VLL+N+ A   R D+ +R+R  +   G+KKQ G S I+    +H F  G
Sbjct: 835  LQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMG 894

Query: 545  DIFNPHSEEIYLMLN-----------EIEMTLQQQGLQETSLQ-----HRERLAVAFGLI 588
            D  +P  +EIY  L+             ++ L  Q ++E   +     H E+LAV FG+I
Sbjct: 895  DRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGII 954

Query: 589  STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +T+ +T IRI+ NLRIC DCH+F+K  SQ+ +REI++RD  RFH F+ G CSC DYW
Sbjct: 955  NTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 93/169 (55%), Gaps = 4/169 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K   +    +LFD++P R+  +W  +IS +   G       L  +M A+G  P++ T
Sbjct: 333 LYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYT 392

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S++   +   +L++GK +H ++  + + +   L N ++D+Y KC     A++L   +E
Sbjct: 393 LSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERL---FE 449

Query: 256 I-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           + +E DVV W  ++  Y+++ + +++  +F  +  ++++SW  ++ G+L
Sbjct: 450 LMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLL 498



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 25/162 (15%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N+L+ +Y K   +  AQKL    EI + +   WT L+SG+ ++   +    LF EM  + 
Sbjct: 328 NHLLTLYAKSNNMAHAQKLFD--EIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKG 385

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI----------- 340
                  +S +L        K C+    L  G  VH ++ +N I +D +           
Sbjct: 386 ACPNQYTLSSVL--------KCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLK 437

Query: 341 ----ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
               E A  LF  ++E +V  W  +I AY  AG  +K++D+F
Sbjct: 438 CKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMF 479



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 31/158 (19%)

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
           +N+  A  LF EI ++N   WT +I+ +A AG ++   +LF EM+  G  P+Q T  ++L
Sbjct: 338 NNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVL 397

Query: 398 SACS-----------HGGLVDEGYDF----------LSKKSRVYNIKPKM---------Q 427
             CS           H  ++  G D           L  K +V+    ++          
Sbjct: 398 KCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVV 457

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            +  M+    RAG +E+S +    +P   DV  W++++
Sbjct: 458 SWNIMIGAYLRAGDVEKSLDMFRRLPY-KDVVSWNTIV 494


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 188/531 (35%), Positives = 284/531 (53%), Gaps = 43/531 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           Q+FD++    +  WNT+   Y    +  E L L  KM   GV PDE T   ++ A ++L 
Sbjct: 64  QVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLG 123

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D   G  LH  + +      G +   LV MY K G++  A+ L    ++   D+V W   
Sbjct: 124 DFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVK--DLVAWNAF 181

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++  V++     A   F++M    +   +  +  ML+        +C  +G+L  G  ++
Sbjct: 182 LAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS--------ACGQLGSLEIGEEIY 233

Query: 328 VYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
              +K +I  +               N E A  LF E+ ++NV  W+++I  YAM G ++
Sbjct: 234 DRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSR 293

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS--KKSRVYNIKPKMQHYG 430
           +A+ LF  M+  G +P+ VTF+ +LSACSH GLV+EG  + S   +S   N++P+ +HY 
Sbjct: 294 EALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYA 353

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           CMVDLLGR+G LEE+  FI  MP+ PD  IW +LL AC  H+++ L +     L ET P 
Sbjct: 354 CMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPD 413

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
               HVLL+NIYA AG+ D + ++R K+R +G KK   YS +E  G +H F  GD  +P 
Sbjct: 414 IGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQ 473

Query: 551 SEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKT 594
           S+ IY  L+EI   +++ G                +E SL  H E+LA+AFGLI      
Sbjct: 474 SKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGH 533

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            IR++ NLR C DCH+F K  S + + EI++RD  RFH F+ G CSC+++W
Sbjct: 534 PIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 182/422 (43%), Gaps = 84/422 (19%)

Query: 46  MVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           ++  S S   + ++IH+ ++ T       + TQ+ E LV  GD+ YA+Q+  +  +P I 
Sbjct: 16  LLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIF 75

Query: 106 IWNSIIENQLINGYPQEV-----------------------------------FAIYLYL 130
           +WN++ +  + N  P E                                    FA++ ++
Sbjct: 76  LWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHV 135

Query: 131 V-----------TRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           V           T  V++  K G+L     LF+ +  +D+++WN  ++     G     L
Sbjct: 136 VKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIAL 195

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
              +KM A+ V  D  T+VS++SA  +L  LE+G+ ++    +  +  +  + N  +DM+
Sbjct: 196 EYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMH 255

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KCG    A+ L    E+ + +VV W+T++ GY  + +  EA  LF  M    L    + 
Sbjct: 256 LKCGNTEAARVLFE--EMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVT 313

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGI-WVHVYIKKNQISIDN-----------------I 340
             G+L+        +C+  G +  G  +  + ++ N  +++                  +
Sbjct: 314 FLGVLS--------ACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLL 365

Query: 341 ELAYDLFSEIS-EKNVYLWTSVIAAYAMAGH---AQKAIDLFLEMEETGTKPDQVTFIAL 396
           E AY+   ++  E +  +W +++ A A+       QK  D+ +E     T PD  ++  L
Sbjct: 366 EEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVE-----TAPDIGSYHVL 420

Query: 397 LS 398
           LS
Sbjct: 421 LS 422


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/567 (32%), Positives = 295/567 (52%), Gaps = 68/567 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +     +F+++  +  + WN MIS Y   GM  E   L  +M  E V  DE T  S++
Sbjct: 242 GDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 201 SARTKLRDLEMGKNLHL--------FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           SA   +     GK++H         F+ E+ + ++    N LV  Y KCG I  A+++  
Sbjct: 302 SACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVN----NALVTFYSKCGNIAVARRIFD 357

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDA- 307
              +   DVV W T++SGYV+S+  D+A  +F+EM  +N +SW +M+SG ++    +DA 
Sbjct: 358 NMTLK--DVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDAL 415

Query: 308 --------------EFKYK----SCASIGALYHGIWVHVYIKKNQISIDN---------- 339
                         ++ Y     +C  +GAL HG  +H +I +      N          
Sbjct: 416 KLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMY 475

Query: 340 -----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                ++ A+ +F  +   +   W ++I+A    GH ++A++LF  M   G  PD+++F+
Sbjct: 476 ARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFL 535

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +L+AC+H GLVDEG+ +     R + I P   HY  ++DLLGRAG + E+ + I +MP 
Sbjct: 536 TVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPF 595

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            P  SIW ++L  CR   +++L  HA   L +  P +DG ++LL+N Y+ AG   D +R+
Sbjct: 596 EPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARV 655

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---- 570
           R  +RD G+KK+ G S IE G  VH F  GD  +P + E+Y  L  +   +++ G     
Sbjct: 656 RKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDT 715

Query: 571 ------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                       +     H ERLAV FGL++     T+ ++ NLRIC DCH+ +   S+ 
Sbjct: 716 KVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKA 775

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
             REIV+RD  RFH F+ G+CSC +YW
Sbjct: 776 VGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 154/353 (43%), Gaps = 57/353 (16%)

Query: 142 KLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVS 198
           +L      FD +P   RD +  N +IS Y         + +   + A G + PD+ +  +
Sbjct: 103 RLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTA 162

Query: 199 LISARTKLRDLEM--GKNLHLFLEESTMKISGSLLNYLVDMYFKCGK---IGEAQKLLGR 253
           L+SA   L ++ +     LH  + +S    + S+ N LV +Y KC       +A+K+L  
Sbjct: 163 LLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLD- 221

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA------ 307
            E+   D + WTT+V GYV+  +   AR +F+E+  +  + W  MISG ++         
Sbjct: 222 -EMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFE 280

Query: 308 -------------EFKYKS----CASIGALYHGIWVHVYIKKNQISI------------- 337
                        EF + S    CA++G   HG  VH  I + Q +              
Sbjct: 281 LFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALV 340

Query: 338 ------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                  NI +A  +F  ++ K+V  W ++++ Y  +    KA+++F EM       +++
Sbjct: 341 TFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK----NEL 396

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
           +++ ++S   HGG  ++     +K  R  N+KP    Y   +   G  G L+ 
Sbjct: 397 SWMVMVSGYVHGGFAEDALKLFNKM-RSENVKPCDYTYAGAIAACGELGALKH 448



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 32/253 (12%)

Query: 47  VERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVF----TGDLGYAQQIIRQG 99
           V  +C+++  F   + +H  +I       P+ +  V   LV      G++  A++I    
Sbjct: 300 VLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNM 359

Query: 100 DEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVI 159
              ++  WN+I+     +GY +                + C  L +  ++F+++P ++ +
Sbjct: 360 TLKDVVSWNTIL-----SGYVE----------------SSC--LDKAVEVFEEMPYKNEL 396

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SW  M+S Y   G   + L L +KM +E V P + T    I+A  +L  L+ GK LH  +
Sbjct: 397 SWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHI 456

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
            +   + S S  N L+ MY +CG + EA  +     +  +D V W  ++S   +     E
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEAHLMF--LVMPNIDSVSWNAMISALGQHGHGRE 514

Query: 280 ARRLFDEMVERNL 292
           A  LFD MV   +
Sbjct: 515 ALELFDRMVAEGI 527



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 2/152 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG +KE   +F  +PN D +SWN MIS     G  RE L L  +M AEG+ PD ++ ++
Sbjct: 477 RCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLT 536

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISG-SLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +++A      ++ G      ++     I G      L+D+  + G+IGEA+ L+     +
Sbjct: 537 VLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFE 596

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
               + W  ++SG   S + +      D++ +
Sbjct: 597 PTPSI-WEAILSGCRTSGDMELGAHAADQLFK 627


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 194/635 (30%), Positives = 318/635 (50%), Gaps = 78/635 (12%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           R+C +I    ++H+   T+    D   +  +       GDL  A+ +     +  +  WN
Sbjct: 53  RACRAIPLLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWN 112

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
            +I   + NG                        L    +LFDK+P R+V +WN M++  
Sbjct: 113 ILIGGCIKNG-----------------------DLGSARELFDKMPTRNVATWNAMVAGL 149

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           T++G+  + L     M  EG+ PDE  + S+      L D+  G+ +H ++  S M    
Sbjct: 150 TNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDM 209

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM- 287
            + N L  MY +CG + E + +L    +  + +V + T ++G  ++ + + A   F  M 
Sbjct: 210 CVGNSLAHMYMRCGCLAEGEAVL--RALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMR 267

Query: 288 ---VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS-------- 336
              V  +++++   IS             C+ + AL  G  VH  + K  +         
Sbjct: 268 GVEVAPDVVTFVSAIS------------CCSDLAALAQGQQVHAQVIKAGVDKVVPVITS 315

Query: 337 ----------IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                     + + E  YD +  +   +++L +++I+A    G   KA++LF +M   G 
Sbjct: 316 LVHMYSRCGCLGDSERVYDGYCGL---DLFLLSAMISACGFHGQGHKAVELFKQMMNGGA 372

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           +P++VTF+ALL ACSH GL DEG +F    ++ Y  +P ++HY C+VDLLGR+G L+E+ 
Sbjct: 373 EPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAE 432

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             I SMP+  D  IW +LL AC+  +N  +AE   + + E+DP +   +VLL+NI A + 
Sbjct: 433 ALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSK 492

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
           R  D++ +R  +R+  ++K+ G S +E  G VH+F +GD  +P   EI   L E+   ++
Sbjct: 493 RWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIR 552

Query: 567 QQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
           Q G                +E SL  H E+LA+AF  ++  E   IR++ NLR+C DCH 
Sbjct: 553 QCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHV 612

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +K+ SQV  REIV+RD  RFH F+ G+CSC DYW
Sbjct: 613 AIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 198/581 (34%), Positives = 319/581 (54%), Gaps = 71/581 (12%)

Query: 131 VTRTVLLNK------CGKLKEVCQLFDKLPNRDVISWNTMISCYT-SMGMYREGLGLL-S 182
           +T  V+ NK         L    +LFD++P  D+  +NTMI  ++ S   Y + + +  S
Sbjct: 208 ITLPVIANKFLKNVALASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRS 267

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL--LNYLVDMYFK 240
            +   G  P+  + V    A      +  G+   +F     + + G++  +N L+ M+ K
Sbjct: 268 LIRDSGYFPNRYSFVFAFGACGNGMCVREGE--QVFTHAVKVGLDGNVFVVNALIGMFGK 325

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
            G++ +A+ +     +D  D   W T++  YV S     A+ LFDEM ER+++SW+ +I+
Sbjct: 326 WGRVEDARNVFDS-AVDR-DFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIA 383

Query: 301 GMLN-----QDAEFKYK------------------SCASIGALYHGIWVHVYIKKNQISI 337
           G +      +  +F +K                  +C+++ AL  G W+HVYI+++ I +
Sbjct: 384 GYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKM 443

Query: 338 DNIELA--YDLFSEISE--------------KNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
           ++  LA   D++++  E              + V+ W ++I  +AM G  ++AI++F +M
Sbjct: 444 NDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKM 503

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
           +     P++VTFIALL+ACSHG +V EG  +    +  Y I P+++HYGCMVDLL R+GH
Sbjct: 504 KVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGH 563

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           L++S   I SMP+ PDV+IW +LL ACR +++++      + + E DP + G +VLL NI
Sbjct: 564 LKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNI 623

Query: 502 YAKAGRLDDMSRIRMKLR-DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           Y+ +GR ++   +R K   +   KK  G+S IE  G  H+F  GD  +P S EIY  L+E
Sbjct: 624 YSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDE 683

Query: 561 IEMTLQQQGL----------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLR 603
           +   L+  G                 +ET+L  H E+LA+AFGL++T+  T IRIV NLR
Sbjct: 684 MISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLR 743

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           +CGDCH   K  S+VY+R I++RD  R+H F+ G CSC+DY
Sbjct: 744 VCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 182/498 (36%), Positives = 274/498 (55%), Gaps = 58/498 (11%)

Query: 190 SPDEVTMVSLISARTKL------RDLEMGKNLH--LF---LEESTMKISGSLLNYLVDMY 238
           +P+  T   L++A  +L      R+   G  +H  LF   LE     IS S+L++    Y
Sbjct: 90  NPNNYTYPPLLAACARLLPAHPPREAAAGTAVHASLFRRGLESRDRFISASMLSF----Y 145

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
              G +  A+++  R   ++ D+ LW +L+  Y+         RLF +MV  + ++   +
Sbjct: 146 AAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLFRQMVATDEVTLLAV 205

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN---------------QISIDNIELA 343
           +S            +C+ +GAL  G W H Y  +                 +   ++E A
Sbjct: 206 VS------------ACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDVESA 253

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
           + +F E+ +K+V  W+ +IA  A+ G  + A+ LF EM+  G  PD +T  A+LSACSH 
Sbjct: 254 WSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHA 313

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           G+VDEG  FL      Y+++P ++HYGC+VDLLGRAG LEE+   I ++P   DV++W +
Sbjct: 314 GMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGA 373

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL ACR H+NV + + A   + + DP + GA V L+N YA AG+ D +  +R  +++  +
Sbjct: 374 LLVACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSNAYAAAGKWDLVQEVRSSMKEHRI 433

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS--------- 574
            K  G S++E  G V++F SGD  +P S+ IY ML+E+  TL  +G + ++         
Sbjct: 434 YKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGHRPSTKEVAFDIDE 493

Query: 575 -------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
                   QH E+LA+A GLIST     IRIV NLRIC DCHS MK+ S+VY+R IV+RD
Sbjct: 494 EDKEVCISQHSEKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKIVSEVYDRVIVVRD 553

Query: 628 NGRFHRFQGGQCSCRDYW 645
             RFH F+ G CSC DYW
Sbjct: 554 RNRFHHFKNGSCSCLDYW 571



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 112/256 (43%), Gaps = 48/256 (18%)

Query: 60  IHSHLITTNL-MRDPQISTQVFEFLVFTGDLGYAQQIIRQG--DEPEIKIWNSIIENQLI 116
           +H+ L    L  RD  IS  +  F    GDL  A+++  +   ++ ++ +WNS++   L 
Sbjct: 121 VHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLS 180

Query: 117 NGYPQEVFAIYLYLV-------------------------------------TR---TVL 136
            G    V  ++  +V                                     TR   T L
Sbjct: 181 QGLYTHVLRLFRQMVATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTAL 240

Query: 137 LN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           LN   +CG ++    +F ++ ++DV +W+ MI+     G+ R+ L L ++M   GV PD 
Sbjct: 241 LNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDS 300

Query: 194 VTMVSLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           +TM +++SA +    ++ GK  LH    E  ++ +      +VD+  + G++ EA  L+ 
Sbjct: 301 ITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIE 360

Query: 253 RYEIDEVDVVLWTTLV 268
                + DV LW  L+
Sbjct: 361 TVPF-KADVALWGALL 375


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 293/559 (52%), Gaps = 64/559 (11%)

Query: 149 LFDKLPNRD--VISWNTMISCYTSMGMYREGLGLLSKM----GAEGVSPDEVTMVSLISA 202
           LFD  P+    +  WN MI  Y+ +   +E + L  +M    G   V PDE T   +I++
Sbjct: 128 LFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITS 187

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
            +    L  G+ +H  + +S  + +  + N +++M     ++ +A+K+    ++ E DV 
Sbjct: 188 CSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFN--QMSERDVF 245

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML------------------- 303
            WT+L+ GY K  E D A  LF+ M  RN +SW +MISG L                   
Sbjct: 246 SWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDD 305

Query: 304 --NQDAEF---KYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELA 343
             N +         +CA +GAL  G W+H+YI K  I          ID       I+ A
Sbjct: 306 RVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCA 365

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             +F+ I +++V  +TS+I+  +  G  + A+ +F +M +    P+++T + +L+ CSH 
Sbjct: 366 SRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHS 425

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GLV+EG   L+    ++ I PK++HYGC +DLLGRAG+LE +   + +MP+ PD+ IW +
Sbjct: 426 GLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRA 485

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLN-DGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           LL A R H NV L E    H+ +    + +G  VLL+N+YA  GR + ++ +R  + D  
Sbjct: 486 LLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRR 545

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ------ 576
            +   G S IE  G VH+F   D  +P   EI   LNEI   L Q G    ++Q      
Sbjct: 546 SESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLN 605

Query: 577 ----------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                     H E+LA+AFGL+ST   T IRIV NLR C DCHS +K  SQVY REIV+R
Sbjct: 606 EEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVR 665

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  RFH F  G CSC+D+W
Sbjct: 666 DRSRFHTFIEGDCSCKDFW 684



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 75/134 (55%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG++    ++F+ +  RDV+S+ +MIS  +  G+ ++ L +  +M  E V P+E+T++ 
Sbjct: 358 KCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILG 417

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           +++  +    +E G ++ L   ES   I+  + +Y   +D+  + G +  A +++    +
Sbjct: 418 VLNGCSHSGLVEEGSSI-LANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPM 476

Query: 257 DEVDVVLWTTLVSG 270
            E D+V+W  L+S 
Sbjct: 477 -EPDIVIWRALLSA 489


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 203/664 (30%), Positives = 327/664 (49%), Gaps = 107/664 (16%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV---------LL 137
           GD   AQQ+     +P+    +++I      G P E   +Y  L  R +         + 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 138 NKCG------KLKEV-------------------------CQ-------LFDKLPNRDVI 159
             CG      ++KEV                         C+       +FD L  +DV+
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SW +M SCY + G+ R GL +  +MG  GV P+ VT+ S++ A ++L+DL+ G+ +H F 
Sbjct: 200 SWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFA 259

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
               M  +  + + LV +Y +C  + +A+ +     +   DVV W  +++ Y  + E D+
Sbjct: 260 VRHGMIENVFVCSALVSLYARCLSVKQARLVFDL--MPHRDVVSWNGVLTAYFTNREYDK 317

Query: 280 ARRLFDEM----VERNLISWTLMISGMLN--------------QDAEFK---------YK 312
              LF +M    VE +  +W  +I G +               Q+  FK           
Sbjct: 318 GLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLP 377

Query: 313 SCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYL 357
           +C+ + +L  G  VH Y+ ++ +  D               ++ L+ ++F  I  K+V  
Sbjct: 378 ACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVA 437

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           W ++I A AM G+ ++ + LF  M ++G KP+ VTF  +LS CSH  LV+EG    +   
Sbjct: 438 WNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMG 497

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
           R + ++P   HY CMVD+  RAG L E+  FI  MP+ P  S W +LL ACR ++NV+LA
Sbjct: 498 RDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELA 557

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           + +   L E +P N G +V L NI   A    + S  R+ +++ G+ K  G S ++ G  
Sbjct: 558 KISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDR 617

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ETSLQHRERL 581
           VH F  GD  N  S++IY  L+E+   ++  G +                E+   H E+L
Sbjct: 618 VHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKL 677

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           AVAFG+++ + +++IR+  NLRICGDCH+ +K  S+V    I++RD+ RFH F+ G CSC
Sbjct: 678 AVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSC 737

Query: 642 RDYW 645
           +D W
Sbjct: 738 QDLW 741



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 141/317 (44%), Gaps = 11/317 (3%)

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           IW  +   ++    P  + + +L L      LN  G  +   QLFD +P  D  + +T+I
Sbjct: 47  IWKQLTSTKVAPSVPTNIPS-HLGLRLLKAALN-VGDFRRAQQLFDNIPQPDPTTCSTLI 104

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           S +T+ G+  E + L + + A G+ P     +++  A     D    K +H       M 
Sbjct: 105 SAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMM 164

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
               L N L+  Y KC  +  A+++     +   DVV WT++ S YV          +F 
Sbjct: 165 SDAFLGNALIHAYGKCKCVEGARRVFDDLVVK--DVVSWTSMSSCYVNCGLPRLGLAVFC 222

Query: 286 EMVERNLISWTLMISGMLNQDAEFK-YKSCASIG--ALYHGIWVHVYIKKNQISID---- 338
           EM    +   ++ +S +L   +E K  KS  +I   A+ HG+  +V++    +S+     
Sbjct: 223 EMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCL 282

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           +++ A  +F  +  ++V  W  V+ AY       K + LF +M   G + D+ T+ A++ 
Sbjct: 283 SVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIG 342

Query: 399 ACSHGGLVDEGYDFLSK 415
            C   G  ++  + L K
Sbjct: 343 GCMENGQTEKAVEMLRK 359


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 201/615 (32%), Positives = 320/615 (52%), Gaps = 75/615 (12%)

Query: 70  MRDPQISTQVFEFLVFTGDLGY---AQQI----IRQGDEPEIKIWNSIIENQLINGYPQE 122
           ++  Q+S  +   +V +G LGY    ++I    I+ G +  I + N++I+          
Sbjct: 257 LKPDQVS--IISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLID---------- 304

Query: 123 VFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
                        +  KC  +    + FD + ++D+ISW T  + Y     Y + L LL 
Sbjct: 305 -------------MYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLR 351

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           ++  EG+  D   + S++ A   L  L   K +H +     +     L N ++D+Y +CG
Sbjct: 352 QLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNTIIDVYGECG 410

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
            I  A ++    E    DVV WT+++S YV +   ++A  +F  M E  L    + +  +
Sbjct: 411 IIDYAVRIFESIECK--DVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSI 468

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI----SIDN-----------IELAYDLF 347
           L+        +  S+  L  G  +H +I +       SI N           +E AY +F
Sbjct: 469 LS--------AVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIF 520

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
           +    +N+ LWT++I+AY M G+ + A++LF+ M++    PD +TF+ALL ACSH GLV+
Sbjct: 521 TCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVN 580

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG  FL      Y ++P  +HY C+VDLLGR   LEE+   + SM   P   +W +LL A
Sbjct: 581 EGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGA 640

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H N ++ E A + L E D  N G +VL++N++A  GR  D+  +RM+++  GL K  
Sbjct: 641 CRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNP 700

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-------------LQETS 574
           G S IE G  +H F S D  +P  ++IY  L ++   L+++G              +E  
Sbjct: 701 GCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEK 760

Query: 575 LQ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           +Q    H ERLA+A+GL++T+E T IR+  NLR+CGDCHSF  + S+ + RE+++RD  R
Sbjct: 761 VQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASR 820

Query: 631 FHRFQGGQCSCRDYW 645
           FH F+ G CSC D+W
Sbjct: 821 FHHFKDGMCSCGDFW 835



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 180/392 (45%), Gaps = 57/392 (14%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           GK+ E   +F  L  +D+++WN+M++ +   G+Y E L     +    + PD+V+++S+I
Sbjct: 209 GKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISII 268

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI---GEAQKLLGRYEID 257
            A  +L  L  GK +H +  ++    +  + N L+DMY KC  +   G A  L+      
Sbjct: 269 VASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHK--- 325

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
             D++ WTT  +GY ++    +A  L  ++    +     MI  +L         +C  +
Sbjct: 326 --DLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSIL--------LACRGL 375

Query: 318 GALYHGIWVHVYIKKNQIS--------IDN------IELAYDLFSEISEKNVYLWTSVIA 363
             L     +H Y  +  +S        ID       I+ A  +F  I  K+V  WTS+I+
Sbjct: 376 NCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMIS 435

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA-CS----------HGGLVDEGYDF 412
            Y   G A KA+++F  M+ETG +PD VT +++LSA CS          HG ++ +G+  
Sbjct: 436 CYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFIL 495

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
               S              +VD+  R G +E++    T      ++ +W++++ A   H 
Sbjct: 496 EGSISNT------------LVDMYARCGSVEDAYKIFTCTK-NRNLILWTAMISAYGMHG 542

Query: 473 NVKLAEHAFKHLTETDPLNDGAHV-LLANIYA 503
             + A   F  + +   + D  H+  LA +YA
Sbjct: 543 YGEAAVELFMRMKDEKIIPD--HITFLALLYA 572



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 135/295 (45%), Gaps = 13/295 (4%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG + +   +FDK+  R + +WN M+  Y S G     L +  +M   GVS D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
              L+ A   + DL  G  +H    +        ++N LV +Y KC  I  A+KL  R  
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--QDAEF-KYK 312
           +   DVV W +++S Y  +    EA  LF EM++  +++ T   +  L   +D+ F K  
Sbjct: 121 VRN-DVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179

Query: 313 SCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
                  L  G  + VY+    +++      +  A  +F  +  K++  W S++  +   
Sbjct: 180 MQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQN 239

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           G   +A++ F +++    KPDQV+ I+++ A    G +  G     K+   Y IK
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG-----KEIHAYAIK 289



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 182/413 (44%), Gaps = 50/413 (12%)

Query: 127 YLYLVTRTV-LLNKCGKLKEVCQLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKM 184
           ++++V   V L  KC  +    +LFD++  R DV+SWN++IS Y+  GM  E L L S+M
Sbjct: 92  FVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEM 151

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
              GV  +  T  + + A      +++G  +H  + +S   +   + N LV MY + GK+
Sbjct: 152 LKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKM 211

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
            EA  + G  E    D+V W ++++G++++    EA   F ++   +L    + I  ++ 
Sbjct: 212 PEAAVIFGNLEGK--DIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIV 269

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FS 348
                 Y        L +G  +H Y  KN     NI +   L                F 
Sbjct: 270 ASGRLGY--------LLNGKEIHAYAIKNGFD-SNILVGNTLIDMYAKCCCMSYGGRAFD 320

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            ++ K++  WT+  A YA      +A++L  +++  G   D     ++L AC        
Sbjct: 321 LMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC-------R 373

Query: 409 GYDFLSKKSRV--YNIK-----PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           G + L K   +  Y I+     P +Q+   ++D+ G  G ++ +     S+    DV  W
Sbjct: 374 GLNCLGKIKEIHGYTIRGGLSDPVLQNT--IIDVYGECGIIDYAVRIFESIEC-KDVVSW 430

Query: 462 SSLLRACRCHQNV-KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           +S++ +C  H  +   A   F  + ET    D  +V L +I +    L  + +
Sbjct: 431 TSMI-SCYVHNGLANKALEVFSSMKETGLEPD--YVTLVSILSAVCSLSTLKK 480


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 197/577 (34%), Positives = 316/577 (54%), Gaps = 60/577 (10%)

Query: 124 FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGL 180
           F +  +L    V + + C  +    ++F+ +P   RDV+SWN++IS +   G     L  
Sbjct: 196 FGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRT 255

Query: 181 LSKMGAEGVS---PDEVTMVSLISARTKLRDLEMGKNLHLFLEE--STMKISGSL--LNY 233
              M +EG S   P+ VT+++L+ +  +L  +E    +H ++    S++ ++  +  L  
Sbjct: 256 FEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTA 315

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV-ERNL 292
           L+DM+ +CG +  A+++     ++  +VV W+ +++GY + +  +EA RLF +M+ E N+
Sbjct: 316 LLDMHARCGNLALAREIFD--GVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNM 373

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------------- 338
           +   +  + +          +C+ +GA      +H Y     +  D              
Sbjct: 374 VGVEVKPNAVTLVSV---IAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKC 430

Query: 339 -NIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
            +IE    +FSE+ E  + V  W+S+I A  + G  ++A++LF EM   G +P+++T+I+
Sbjct: 431 GDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYIS 490

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           +LSACSH GLV++G    +   + Y + P  +HY C+VDLLGRAGHL+E+ N I +MPI 
Sbjct: 491 VLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK 550

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
            D+++W SLL AC  H N KL E   K +   D  + G HVLLAN+Y  AGR DD+ R+R
Sbjct: 551 ADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMR 610

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--LQET 573
           ++LR  GL+K  G S IE G  V+ F + D  +P SE IY  L+ ++  +++    + ET
Sbjct: 611 VELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVTET 670

Query: 574 SLQ---------------HRERLAVAFGLI----------STSEKTTIRIVNNLRICGDC 608
            L                H ERLA+AFGLI          S    T IRI  NLR+C DC
Sbjct: 671 GLNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRVCRDC 730

Query: 609 HSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           H++ K+ S+V +RE+++RD  RFH F+ G CSC DYW
Sbjct: 731 HAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 169/392 (43%), Gaps = 58/392 (14%)

Query: 138 NKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKM-------GAEG 188
            KCG      Q+FD++P  + DV+SW  +IS Y+S G   E      +M       G+E 
Sbjct: 98  GKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSEC 157

Query: 189 VSPDEVTMVSLISA---RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
              D V++ +L+SA         L  G  +H  + +    +S  L N +V MY  C  +G
Sbjct: 158 CGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVG 217

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-------VERNLISWTLM 298
            A ++     I++ DVV W +L+SG+  + E + A R F++M       VE N ++   +
Sbjct: 218 GAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIAL 277

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI-------------------DN 339
           +            KSCA +G +    WVH YI     S+                    N
Sbjct: 278 L------------KSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGN 325

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT------KPDQVTF 393
           + LA ++F  +  KNV  W+++IA Y      ++A+ LF +M   G       KP+ VT 
Sbjct: 326 LALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTL 385

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           +++++ACS  G        + K +    +    +    ++D+  + G +E      + M 
Sbjct: 386 VSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMD 444

Query: 454 IPPDVSI-WSSLLRACRCHQNVKLAEHAFKHL 484
                 + WSS++ A   H   K A   F  +
Sbjct: 445 ESTRTVVSWSSMIGAEGIHGEGKRALELFSEM 476



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 151/340 (44%), Gaps = 31/340 (9%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           + ++D   WN++I+   +    +  L   ++M A  V  +  T  +L+ A   LR L   
Sbjct: 13  ISHKDTFHWNSLIA-KNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
             +H +L    +         LVD Y KCG    A ++        VDVV WT L+S Y 
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYS 131

Query: 273 KSNERDEARRLFDEMVERNLISW---------TLMISGMLNQDAEFKYKSCASIGALYHG 323
            +   DEA   F  M  R +  W          + +  +++  A     +C   G+  HG
Sbjct: 132 SNGCVDEAFXAFGRM--RWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 324 I------WVHVYIKKNQI----SIDNIELAYDLFS--EISEKNVYLWTSVIAAYAMAGHA 371
           +       V  ++  + +    +  ++  A+ +F+   I +++V  W S+I+ + + G A
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEA 249

Query: 372 QKAIDLFLEMEETGT---KPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPK 425
           ++A+  F +M   GT   +P++VT IALL +C+  G V+     ++++S +     +   
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           +     ++D+  R G+L  +      +    +V  WS+++
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVE-GKNVVCWSAMI 348


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 193/582 (33%), Positives = 306/582 (52%), Gaps = 75/582 (12%)

Query: 130 LVTRTVL--LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA- 186
           L++ T+L    KCG + +  QLFD++PNRD +SW ++++ +    + R  L +L+ M   
Sbjct: 39  LLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTH 98

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLH------LFLEESTMKISGSLLNYLVDMYFK 240
           +G+ PD      ++ A + L  L +GK +H       F ++  +K S      L+DMY K
Sbjct: 99  DGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSS------LIDMYTK 152

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG+  +A+ +     I   + V WT+++SGY +S  + EA  LF +   RNL SWT +IS
Sbjct: 153 CGQPDDARAVFD--SILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALIS 210

Query: 301 GMLNQDAEFKYK-------------------------SCASIGALYHGIWVH-------- 327
           G++ Q     Y                           CA++  L  G  +H        
Sbjct: 211 GLI-QSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGF 269

Query: 328 ---VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
              ++I    + +     +I  A D+F  +  K+V  WTS+I   A  G A++A+ L+ E
Sbjct: 270 ESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDE 329

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M  +  KP++VTF+ LL ACSH GLV  G +     +  Y+I P +QHY C++DLL R+G
Sbjct: 330 MVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSG 389

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
           HL+E+ N +  +P  PD   W+SLL AC  H N+++       + +  P +   ++LL+N
Sbjct: 390 HLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILLSN 449

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN-PHSEEIYLMLN 559
           +YA A     +S++R  +  M ++K+ GYS I+ G     F +G+  + P   EI  +L 
Sbjct: 450 VYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNLLK 509

Query: 560 EIEMTLQQQGL-------------QETSLQ---HRERLAVAFGLISTSEKTTIRIVNNLR 603
           +++  ++++G              QE   Q   H ERLAVA+GL+     T IRIV NLR
Sbjct: 510 DLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKNLR 569

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ICGDCH+ +K  S +  REI++RD  R+H F+ G+CSC D+W
Sbjct: 570 ICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 49/223 (21%)

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           LH  + ++    S  L N L+D+Y KCG I +A +L    E+   D V W ++++ + K+
Sbjct: 25  LHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFD--EMPNRDHVSWASILTAHNKA 82

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDA----EFKY----KSCASIGALYHGIWV 326
                       ++ R  +S   M++ M   D      F +    ++C+S+G L  G  V
Sbjct: 83  ------------LIPRRTLS---MLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQV 127

Query: 327 HVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H     +    D +               + A  +F  I  KN   WTS+I+ YA +G  
Sbjct: 128 HARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRK 187

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
            +A+DLFL+        +  ++ AL+S     GL+  G+   S
Sbjct: 188 CEAMDLFLQ----APVRNLFSWTALIS-----GLIQSGHGIYS 221


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 208/672 (30%), Positives = 332/672 (49%), Gaps = 105/672 (15%)

Query: 77  TQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP--------QEVFAIYL 128
           TQ+    V T ++  A+++    +    +  +S + NQL++ Y         Q +F   L
Sbjct: 26  TQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKML 85

Query: 129 Y--LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
              + +   LL+   K G ++ +   FD++P RD +S+NT I+ ++     +E L L  +
Sbjct: 86  KRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKR 145

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M  EG  P E T+VS+++A  +L DL  GK +H  +       +  + N L DMY KCG+
Sbjct: 146 MQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGE 205

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER-------------------------- 277
           I +A+ L     + + ++V W  ++SGY K+ +                           
Sbjct: 206 IEQARWLFDC--LTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTII 263

Query: 278 ---------DEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYK------------ 312
                    DEARR+F E  E++++ WT M+ G       +DA   +             
Sbjct: 264 AAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSY 323

Query: 313 -------SCASIGALYHGIWVH----VYIKKNQISIDN-----------IELAYDLFSEI 350
                  SCA + +L+HG  VH    +    N + + +           I+ A  +F+ +
Sbjct: 324 TLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
             +NV  W ++I   A  GH + A++LF  M +   KPD VTFI +LSAC H   +++G 
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
           ++    +  + + P + HY CMV+LLGR G +E++   I +M   PD  IWS+LL  C  
Sbjct: 444 EYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICST 503

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
             ++  AE A +HL E DP     +++L+N+YA  GR  D++ +R  ++   +KK  G+S
Sbjct: 504 KGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFS 563

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS---------------- 574
            IE    VH+FTS D  +P SE+IY  LN +   LQ++G    +                
Sbjct: 564 WIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSI 623

Query: 575 LQHRERLAVAFGLISTSEK-TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
             H E+LA+AFGLI      + IRI+ N+RIC DCH FMK  S++  R+I++RD+ RFH 
Sbjct: 624 CFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHH 683

Query: 634 FQGGQCSCRDYW 645
           F  G+CSC D W
Sbjct: 684 FSTGKCSCNDNW 695



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 156/361 (43%), Gaps = 44/361 (12%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           ++IH  +I  N + +  I   + +     G++  A+ +     +  +  WN +I     N
Sbjct: 175 KQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKN 234

Query: 118 GYPQEVFAIYLYL---------VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMI 165
           G P++   +   +         VT + ++    +CG++ E  ++F +   +D++ W  M+
Sbjct: 235 GQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMM 294

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
             Y   G   + L L ++M  E + PD  T+ S++S+  KL  L  G+ +H   +     
Sbjct: 295 VGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVH--GKSILAG 352

Query: 226 ISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           ++ +LL  + L+DMY KCG I +A+ +     +   +VV W  ++ G  ++    +A  L
Sbjct: 353 LNNNLLVSSALIDMYSKCGFIDDARSVFNL--MPTRNVVSWNAMIVGCAQNGHDKDALEL 410

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA 343
           F+ M+++      +   G+L+              A  H  W    I++ Q   D+I   
Sbjct: 411 FENMLQQKFKPDNVTFIGILS--------------ACLHCNW----IEQGQEYFDSITNQ 452

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
           + +   +       +  ++      G  ++A+ L   M      PD + +  LLS CS  
Sbjct: 453 HGMTPTLDH-----YACMVNLLGRTGRIEQAVALIKNMAH---DPDFLIWSTLLSICSTK 504

Query: 404 G 404
           G
Sbjct: 505 G 505


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/490 (36%), Positives = 273/490 (55%), Gaps = 45/490 (9%)

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           P++ T   ++ A   + +L +GK++H  + +       ++ N LV MY  C + GE    
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYC-CCRGGEGGIE 66

Query: 251 LGRYEIDEV---DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
             R   DE+   D V W+ ++ GYV+     +A  LF EM  + +    + +  +L+   
Sbjct: 67  FARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLS--- 123

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSEIS 351
                +C  +GAL  G WV  Y++K ++   N+EL                A +LF  + 
Sbjct: 124 -----ACTGLGALELGKWVESYVEKERVQ-KNVELSNALIDMFAKCGDVDKATNLFRSMR 177

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           E+N+  WTSVI   AM G   +A+ +F EM  +G  PD V FI LLSACSH GLVD+G  
Sbjct: 178 ERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKR 237

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           +     + ++I PK++HYGCMVD+L RAG ++E+  F+  MPI P+  +W +L+ ACR H
Sbjct: 238 YFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAH 297

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
             +KL E   + L   +P+++  +VLL+NIYAK    +  +RIR  +   G+KK  G ++
Sbjct: 298 GELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTM 357

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ--------------- 576
           IE    +++F +GD  +  S+EIY M++E+   +++ G   T+ +               
Sbjct: 358 IELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLN 417

Query: 577 -HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LA+AF L++T   T IRIV NLR+C DCHS  K  S++YNREIV+RD  RFH F+
Sbjct: 418 RHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFK 477

Query: 636 GGQCSCRDYW 645
            G CSCRD+W
Sbjct: 478 NGLCSCRDFW 487



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 4/137 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG + +   LF  +  R+++SW ++I      G   E + +  +M   GV+PD+V 
Sbjct: 159 MFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVV 218

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            + L+SA +    ++ GK     + +    I   + +Y  +VDM  + G + EA K +  
Sbjct: 219 FIGLLSACSHSGLVDKGKRYFDSMRKD-FSIVPKIEHYGCMVDMLCRAGLVKEALKFVQE 277

Query: 254 YEIDEVDVVLWTTLVSG 270
             ID  + V+W TL++ 
Sbjct: 278 MPIDP-NPVVWRTLINA 293



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 86/203 (42%), Gaps = 23/203 (11%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
           +   VCP  + ++ V  +C+ +   E    + S++    + ++ ++S  + +     GD+
Sbjct: 107 QIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDV 166

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV---------LLNKC 140
             A  + R   E  I  W S+I    ++G   E  A++  +V   V         LL+ C
Sbjct: 167 DKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSAC 226

Query: 141 ---GKLKEVCQLFDKLPNRDVI-----SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
              G + +  + FD +     I      +  M+      G+ +E L  + +M    + P+
Sbjct: 227 SHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEM---PIDPN 283

Query: 193 EVTMVSLISARTKLRDLEMGKNL 215
            V   +LI+A     +L++G+ +
Sbjct: 284 PVVWRTLINACRAHGELKLGEKI 306


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 198/604 (32%), Positives = 297/604 (49%), Gaps = 90/604 (14%)

Query: 128 LYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           L+ +TR  L   C ++    +LFD++PN  VI WN +I  Y   G +   + L   M   
Sbjct: 46  LHKLTRLYL--SCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHL 103

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV P++ T   ++ A + L  +E G  +H   +   ++    +   LVD Y KCG + EA
Sbjct: 104 GVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEA 163

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA--------------------------- 280
           Q+L     +   DVV W  +++G       D+A                           
Sbjct: 164 QRLFS--SMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ 221

Query: 281 -----RRLFDEMVERNLISWTLMISGMLNQDAE------FK-----------------YK 312
                R++FD M  RN +SW+ MI G +  D        F+                   
Sbjct: 222 CLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLP 281

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYL 357
           +C+ + AL HG   H Y+     + D                I  A ++F+ +   ++  
Sbjct: 282 ACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVS 341

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           W ++I  Y + G   +A+ LF ++   G KPD +TFI LLS+CSH GLV EG  +    S
Sbjct: 342 WNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMS 401

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
           R ++I P+M+H  CMVD+LGRAG ++E+ +FI +MP  PDV IWS+LL ACR H+N++L 
Sbjct: 402 RDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELG 461

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E   K +    P + G  VLL+NIY+ AGR DD + IR+  +D GLKK  G S IE  G 
Sbjct: 462 EEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGI 521

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ETSLQHRERL 581
           VH F  GD  +    +I   L E+ + +++ G Q                +  L H E+L
Sbjct: 522 VHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKL 581

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AFG+++      I +  NLR+CGDCH+ +K  + +  REI +RD  RFH F+ G C+C
Sbjct: 582 AIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNC 641

Query: 642 RDYW 645
            D+W
Sbjct: 642 GDFW 645


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 189/604 (31%), Positives = 314/604 (51%), Gaps = 90/604 (14%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKIW 107
           +C S  + ++I + +I T L+ D   S+++  F   +   +L Y  +I+     P +  W
Sbjct: 62  NCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSW 121

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTR----------TVLLNKCGKL-------------- 143
           N++I   + +  PQ+   +Y  ++TR          + L   C  L              
Sbjct: 122 NAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVL 181

Query: 144 -----KEVC-------------------QLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                K++                    ++FD+   RD++SWN++I+ Y      RE +G
Sbjct: 182 KMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMG 241

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           +  +M  E V PDEVTM+ ++SA  +L  L++G+ +H ++EES + +  SL+N L+DMY 
Sbjct: 242 IYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYV 301

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
           KCG + EA K+L    + +  VV WTT++ GY K+   D A +LF +M E+N+++W  MI
Sbjct: 302 KCGDL-EAGKVLFD-NMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMI 359

Query: 300 SGMLNQDAEFK-----------------------YKSCASIGALYHGIWVHVYIKKNQIS 336
              +  +  F+                         +C+ +GAL  G+W H YIKK+ +S
Sbjct: 360 GSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLS 419

Query: 337 ID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
           +D               N+  A  +F+E+  +N   WT++I   A+ G+   AI  F +M
Sbjct: 420 LDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKM 479

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
            ++G  PD++TF+ +L+AC HGGLV+EG  +  +    +N+ P+ +HY CMV+LLGRAG 
Sbjct: 480 IDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGL 539

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           LEE+   I +MP+  D  +W +L  AC  H+N+ + E A   L + DP + G +VLLAN+
Sbjct: 540 LEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLANM 599

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           Y +AG+ ++   IR  + + G++K  G S IE  G +++F   D  +P SE+IY   N I
Sbjct: 600 YREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQSEQIYECFNLI 659

Query: 562 EMTL 565
             T+
Sbjct: 660 NKTI 663


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 184/597 (30%), Positives = 306/597 (51%), Gaps = 93/597 (15%)

Query: 140  CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
            CG+      +FD++P ++V+ +N MI  Y +  +Y + L +   M   G+ PD  T   +
Sbjct: 1073 CGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCV 1132

Query: 200  ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            + A +   DL +G  +H  +    + ++  + N L+ MY KCG + EA ++L   Z+   
Sbjct: 1133 LKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD--ZMPCR 1190

Query: 260  DVVLWTTLVSGYVKSNERDEA-------------------------------------RR 282
            DVV W +LV+G  ++ + D+A                                     + 
Sbjct: 1191 DVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKE 1250

Query: 283  LFDEMVERNLISWTLMISGMLNQDAEFK-----------------------YKSCASIGA 319
            +F ++  ++L+SW +MI+  +N     +                         +C  + A
Sbjct: 1251 MFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSA 1310

Query: 320  LYHGIWVHVYIKKNQIS----IDN-----------IELAYDLFSEISEKNVYLWTSVIAA 364
            L  G  +H Y+ + ++     ++N           +E A ++F ++  ++V  WTS+I+A
Sbjct: 1311 LLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISA 1370

Query: 365  YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            Y M G  + A+ LF  M++ G  PD + F+++LSACSH GL+DEG  +    +    I P
Sbjct: 1371 YGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVP 1430

Query: 425  KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            +++H+ CMVDLLGRAG ++E+  FI  MP+ P+  +W +LL ACR + N+ +   A   L
Sbjct: 1431 RIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQL 1490

Query: 485  TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
             +  P   G +VLL+NIYAKAGR +D++ +R  ++  G+KK  G S  E    VH F +G
Sbjct: 1491 FQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAG 1550

Query: 545  DIFNPHSEEIYLMLNEIEMTLQQQGL---QETSLQ-------------HRERLAVAFGLI 588
            D  +P S++IY  L+ +   +++ G     +++L              H E+LA+AF ++
Sbjct: 1551 DQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAIL 1610

Query: 589  STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +T+  + IRI  NLR+CGDCH   K+ S++  REI IRD  RFH F  G CSC DYW
Sbjct: 1611 NTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 172/465 (36%), Positives = 251/465 (53%), Gaps = 56/465 (12%)

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           V MY   G +G  +      EI   DVV  T ++       + D AR LFD M +R+ ++
Sbjct: 166 VSMYAAVGDVGAVRAAFA--EIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVA 223

Query: 295 WTLMISGMLN--------------QDAEFKYK---------SCASIGALYHGIWVHVYIK 331
           W  M++G +               Q A              +CA +GAL  G+WVH Y+ 
Sbjct: 224 WNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVC 283

Query: 332 KNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
              + +                 + ++ ++F  + E+N+Y WTS ++  AM G  ++ ++
Sbjct: 284 SRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLE 343

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF  ME  G +P+ VTF+A+L  CS  GLV+EG          + ++P ++HYGCMVDL 
Sbjct: 344 LFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLY 403

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG L+++ +FI SMP+ P   +W +LL A R H NV L +HA   LTE +  ND AHV
Sbjct: 404 GRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHV 463

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+NIYA++     +S++R  ++  G+KK  G S IE  G VH+F  G   +P  ++I  
Sbjct: 464 LLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQT 523

Query: 557 MLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTIRIVN 600
           ML E+   L+ QG    + +                H E+LA+AFGLI+  E T IRIV 
Sbjct: 524 MLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDTVIRIVK 583

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCH + K+ S+V++REIV+RD  RFH F+ G CSCRDYW
Sbjct: 584 NLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 29/246 (11%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+         DP + +         GD+G  +    +   P++    +++        
Sbjct: 146 VHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGA------ 199

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                            L+  G +    +LFD +P RD ++WN M++ Y  +G  RE LG
Sbjct: 200 -----------------LSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALG 242

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  +M   GV+  EVT+VS+++A  ++  LE G  +H ++    M++S +L   LVDMY 
Sbjct: 243 LFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYS 302

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISW 295
           KCG +  + ++     + E ++  WT+ +SG   +   +E   LF  M    +E N +++
Sbjct: 303 KCGVVTMSMEVF--ETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTF 360

Query: 296 TLMISG 301
             ++ G
Sbjct: 361 VAVLRG 366



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 76/156 (48%), Gaps = 4/156 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG +    ++F+ +  R++ +W + +S     GM  E L L  +M + G+ P+ VT
Sbjct: 300 MYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVT 359

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            V+++   +    +E G+     +++   K+   L +Y  +VD+Y + G++ +A   +  
Sbjct: 360 FVAVLRGCSVAGLVEEGRACFDSMKDKH-KVEPWLEHYGCMVDLYGRAGRLDDAVDFINS 418

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
             ++  + V W  L++     N  D  +    ++ E
Sbjct: 419 MPVEPHEGV-WGALLNASRIHNNVDLGKHAMHKLTE 453


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 195/571 (34%), Positives = 301/571 (52%), Gaps = 50/571 (8%)

Query: 114 QLINGYPQEVFAIYLYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMIS 166
            L+ G      AI+  LVT T+  N       KCG+      +FD +  R ++SWNTMI+
Sbjct: 72  SLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIA 131

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            YT  G   + L L S+M  EG    E T+ S I A      +   K LH    +  +  
Sbjct: 132 GYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDS 191

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           +  +   ++D+Y KC  I +A  +  +  + E  +V W++L +GYV++   +EA  LF  
Sbjct: 192 NSFVGTAILDVYAKCNMIKDACWVFEK--MPERTLVTWSSLFAGYVQNGLHEEALHLF-R 248

Query: 287 MVERNLISWT-LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS--------- 336
             +R  +  T   +S +L+        +CAS+     GI +H  I K             
Sbjct: 249 CAQREGVELTEFTLSAILS--------ACASLALKIEGIQLHAVILKCGFHGNFFVAASL 300

Query: 337 ------IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                    IE AY LF+ +  KNV +W ++IA+++   H+ +A+ LF +M++ G  P++
Sbjct: 301 VDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNE 360

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           VT++++LS CSH GLV++G  + S       ++P + HY CMVD+LGR+G  +E+   + 
Sbjct: 361 VTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLN 420

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            MP  P  S+W SLL +CR + N++LA  A + L + +P N G HVLL+N+YA +G  ++
Sbjct: 421 KMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWEN 480

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ--- 567
           +   R  L+D G KK++G S IE  G VH F  G+  +P   +IY  L EI   +++   
Sbjct: 481 VLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFAR 540

Query: 568 -------------QGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                        +  +E    H E+LA++FGLIS      I I  NLRICGDCHSFMK+
Sbjct: 541 RTSIECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKI 600

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            + +  R +++RD  RFH F+ G CSC D+W
Sbjct: 601 AAHITERLVIVRDTNRFHHFKDGSCSCGDFW 631


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 201/591 (34%), Positives = 311/591 (52%), Gaps = 78/591 (13%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQ--ISTQVFEFLV--FTGDLGYAQQ 94
           P  L  +   ++C SI   ++IH+ +I T    D Q  IST++          D  YA  
Sbjct: 20  PHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALS 79

Query: 95  IIRQGDEPEIKIWNSIIE------NQLING---YPQ------------------------ 121
           ++ Q   P + ++N+II       N  I G   Y Q                        
Sbjct: 80  LLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESR 139

Query: 122 ------EVF--AIYLYLVTRTVLLNKCGKLKEVC-------QLFDKLPNRDVISWNTMIS 166
                 EV   AI + L +   + N   ++  VC       ++FD  P RD++SW TMI 
Sbjct: 140 AVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQ 199

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL-EESTMK 225
            Y  MG  REG+GL  +M  E +  D +T+V ++S+  +L DL +G+ LH ++   S + 
Sbjct: 200 GYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVN 259

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           +   + N LVDMY KCG    A+K+    E+   +VV W +++SG  +  +  E+  +F 
Sbjct: 260 LDVFVGNALVDMYLKCGDANFARKVF--QEMPVKNVVSWNSMISGLAQKGQFKESLYMFR 317

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------- 338
           +M    +    + +  +LN        SCA++G L  G WVH Y+ +NQI  D       
Sbjct: 318 KMQRLGVKPDDVTLVAVLN--------SCANLGVLELGKWVHAYLDRNQIRADGFIGNAL 369

Query: 339 --------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                   +I+ A  +F  ++ K+VY +T++I   AM G   KA+DLF EM + G +PD+
Sbjct: 370 VDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDE 429

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           VTF+ +L+ACSH GLV+EG  +    S +YN++P+++HYGCMVDLLGRAG + E+  FI 
Sbjct: 430 VTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIR 489

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
           +MPI PD  +  +LL AC+ H  V+L E   K + + +P  DGA+VL++NIY+ A R  D
Sbjct: 490 NMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRD 549

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
             ++R  +++  L+K  G S IE  G +H+F  GD  +P  +EIY +L+EI
Sbjct: 550 ALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEI 600


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 189/538 (35%), Positives = 285/538 (52%), Gaps = 80/538 (14%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G++      FD+ P RDV   N M++ Y S     E   +           D + M  
Sbjct: 4   KAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVF----------DGMPMRD 53

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+S                              N ++  Y   G++G A+++    E  +
Sbjct: 54  LVS-----------------------------WNTMIHGYAMRGEVGLAREIFDGTE--D 82

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D   W++++S Y KS    EA  L+ EM   ++I   + +  +++        +C+ +G
Sbjct: 83  RDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVS--------ACSDLG 134

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           AL  G  VH +++ N+I +D               +IE A  +F  + EK+V  W+S+I 
Sbjct: 135 ALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMII 194

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
             A  G   +++ LF +M   G KP+ VTF+ +L AC+H GLV EG  +    + V+ I+
Sbjct: 195 GLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIE 254

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P ++HYGCMVDLLGR+GH+EE+   I SM   PD  IW +LL ACR H+NV++AE A   
Sbjct: 255 PTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAK 314

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L   DPL DG +VLL+NIYA+A   + ++ +R  +R   +++  G S IE    +H+F S
Sbjct: 315 LRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVS 374

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGL 587
           GD  +P S+EIY +L E+   L+Q G                +E SL +H E+LA+AF L
Sbjct: 375 GDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFAL 434

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++T  ++TIRI  NLR C DCHS MK+ S VY+R++++RD  RFH F  GQCSC+DYW
Sbjct: 435 LTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 31/287 (10%)

Query: 114 QLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173
           ++ +G P      +  ++    +  + G  +E+   FD   +RD  SW++MIS Y     
Sbjct: 44  KVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREI---FDGTEDRDAFSWSSMISAYAKSRR 100

Query: 174 YREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY 233
            +E L L  +M A  + PD +T+VS++SA + L  L +G  +H F+E + +++   L   
Sbjct: 101 SKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTA 160

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           L+DMY KCG I  AQ++  R  + E DV  W++++ G        E+  LF +M+   + 
Sbjct: 161 LIDMYAKCGDIESAQRVFDR--MPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMK 218

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
              +   G+L         +C  +G +  G       KK   S++ +           E 
Sbjct: 219 PNGVTFVGVL--------IACTHVGLVSEG-------KKYFRSMNEVHGI--------EP 255

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
            V  +  ++     +GH ++A  L   M     +PD + + ALL AC
Sbjct: 256 TVEHYGCMVDLLGRSGHVEEARQLIRSMT---FEPDTIIWRALLGAC 299



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 103/217 (47%), Gaps = 19/217 (8%)

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKYKSCASIGALYHGIWV 326
           Y K+   D AR  FDE   R++    +M++  +++    +A   +        +     +
Sbjct: 2   YAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMI 61

Query: 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
           H Y  + ++      LA ++F    +++ + W+S+I+AYA +  +++A++L+ EM     
Sbjct: 62  HGYAMRGEVG-----LAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASI 116

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
            PD +T ++++SACS  G +  G + + +      I+  ++    ++D+  + G +E + 
Sbjct: 117 IPDCITLVSVVSACSDLGALAVGAE-VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQ 175

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
                MP   DV  WSS++        + LA H   H
Sbjct: 176 RVFDRMP-EKDVQTWSSMI--------IGLANHGLGH 203


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 187/546 (34%), Positives = 289/546 (52%), Gaps = 49/546 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEV 194
           + +K G L E C++FD++P +D ++W  MI  Y   G     +     M  EG V  D+ 
Sbjct: 163 MYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQH 222

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            + S++SA   L+D  + + +H  + +S  +   ++ N L DMY K   +  A +++ + 
Sbjct: 223 VLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVV-KI 281

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFK 310
           +   ++VV  T+L+ GY++++  ++A  +F E+    VE N  +++ MI G         
Sbjct: 282 DQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKG--------- 332

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNV 355
              CA    L  G  +H  + K  +  D+               I L+  LF EI     
Sbjct: 333 ---CAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTD 389

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W + I   A  GH ++AI  F  M  +G +P+ +TF++LL+ACSH GLVDEG  +   
Sbjct: 390 IAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYS 449

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
               + I+PK +HY C++D+ GRAG L+E+  FI  MP+ P+   W SLL ACR   N +
Sbjct: 450 MKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKE 509

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           L E A  ++ + +P N G HV L+ IYA  G+ +D+  +R  +RD  +KK  G+S ++  
Sbjct: 510 LGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSN 569

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-----------LQETSLQ-----HRE 579
              H F S D  +P  E+IY  L E+   ++++G           L++T+ Q     H E
Sbjct: 570 KKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSE 629

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           R+AVAF LIS      I +  NLRIC DCHS +K  S+V NR+I++RDN RFH F  G C
Sbjct: 630 RIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGC 689

Query: 640 SCRDYW 645
           SC DYW
Sbjct: 690 SCGDYW 695



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 159/375 (42%), Gaps = 39/375 (10%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
            + + C  +    +LFD +P  +++SW T++S  T   M+R+ L   S M   G+ P + 
Sbjct: 61  TMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQF 120

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            + S   A   L     G  LH             + + L DMY K G + EA ++    
Sbjct: 121 ALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFD-- 178

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
           ++ + D V WT ++ GY K+   + A   F +M             G++  D        
Sbjct: 179 QMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRRE----------GLVGADQHVLCSVL 228

Query: 315 ASIGALYHGIW----VHVYIKKN----QISIDNIELAYDLFSEISEK------------- 353
           ++ G L  G W    +H  + K+    ++++ N     D++++ ++              
Sbjct: 229 SASGGLKDG-WLARAIHSCVMKSGFEQEVAVRNA--LTDMYAKAADMDNAARVVKIDQGS 285

Query: 354 -NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
            NV   TS+I  Y      +KA+ +F+E+   G +P++ TF +++  C+   L+++G   
Sbjct: 286 LNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQL 345

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
            ++  +   I         ++D+ G+ G +  S      +    D++ W++ +     H 
Sbjct: 346 HAEVIKTSLISDSFVS-STLLDMYGKCGLISLSIQLFKEIEYHTDIA-WNAAINVLAQHG 403

Query: 473 NVKLAEHAFKHLTET 487
           + + A  AF  +T +
Sbjct: 404 HGREAIRAFDRMTSS 418



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 19/212 (8%)

Query: 208 DLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           DL +G+ LH  L  S    + + L N+L+ MY  C  +  A +L     +   ++V WTT
Sbjct: 32  DLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFD--AMPRPNLVSWTT 89

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           LVSG  +++   +A   F  M    L+     +S      A          GA  H + V
Sbjct: 90  LVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAA---RHAGAQLHCVGV 146

Query: 327 HVYIKKNQISIDNIELAYD----------LFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            +          N+   Y           +F ++ +K+   WT++I  YA  G+ + A+ 
Sbjct: 147 RLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVI 206

Query: 377 LFLEMEETG-TKPDQVTFIALLSACSHGGLVD 407
            F +M   G    DQ    ++LSA   GGL D
Sbjct: 207 AFRDMRREGLVGADQHVLCSVLSA--SGGLKD 236


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/541 (32%), Positives = 298/541 (55%), Gaps = 47/541 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  L    ++F  +  + V SWN +I  +   G   + L L   M   G+ PD  T+ S
Sbjct: 448 KCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGS 507

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ A  +L+ L  GK +H F+  + +++   +   L+ +Y +C  +     LLG+   D+
Sbjct: 508 LLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSM-----LLGKLIFDK 562

Query: 259 VD---VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           ++   +V W  +++G+ ++    EA   F +M+   +    + ++G+L         +C+
Sbjct: 563 MENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLG--------ACS 614

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
            + AL  G  VH +  K  +S D                +E + ++F  ++EK+  +W  
Sbjct: 615 QVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNV 674

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +IA Y + GH  KAI+LF  M+  G +PD  TF+ +L AC+H GLV EG  +L +   +Y
Sbjct: 675 IIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLY 734

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            +KPK++HY C+VD+LGRAG L E+   +  MP  PD  IWSSLL +CR + ++++ E  
Sbjct: 735 GVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEV 794

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K L E +P     +VLL+N+YA  G+ D++ ++R ++++ GL K  G S IE GG V++
Sbjct: 795 SKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYR 854

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSL---------------QHRERLAVA 584
           F   D     S++I     ++E  + + G + +TS                 H E+LA++
Sbjct: 855 FLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAIS 914

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGL++T++ TT+R+  NLRIC DCH+ +K+ S+V  R+I++RDN RFH F+ G C+C D+
Sbjct: 915 FGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDF 974

Query: 645 W 645
           W
Sbjct: 975 W 975



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 143/284 (50%), Gaps = 25/284 (8%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM---GAEGVSP 191
            +  KCG ++   ++F+ + NR+++SWN+++   +  G + E  G+  ++     EG+ P
Sbjct: 238 AMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVP 297

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  TMV++I A   + ++ MG  +H    +  +    ++ N LVDMY KCG +GEA+ L 
Sbjct: 298 DVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARAL- 356

Query: 252 GRYEID-EVDVVLWTTLVSGYVKSNERDEARRLFDEMV--ERNLISWTLMISGMLNQDAE 308
             ++++   +VV W T++ GY K  +      L  EM   E+  ++   +++ +     E
Sbjct: 357 --FDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGE 414

Query: 309 FKYKSCASIG--ALYHGI---------WVHVYIKKNQISIDNIELAYDLFSEISEKNVYL 357
            +  S   I   A  HG          +V  Y K       +++ A  +F  +  K V  
Sbjct: 415 HQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAK-----CSSLDCAERVFCGMEGKTVSS 469

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           W ++I A+A  G   K++DLFL M ++G  PD+ T  +LL AC+
Sbjct: 470 WNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACA 513



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 150/350 (42%), Gaps = 36/350 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG-AEGVSPDEV 194
           + +KCG L E   LFD    ++V+SWNT+I  Y+  G +R    LL +M   E V  +EV
Sbjct: 343 MYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEV 402

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T+++++ A +    L   K +H +           + N  V  Y KC  +  A+++    
Sbjct: 403 TVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGM 462

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
           E   V    W  L+  + ++    ++  LF  M++  +      I  +L   A  K+  C
Sbjct: 463 EGKTVSS--WNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRC 520

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
                   G  +H ++ +N + +D               ++ L   +F ++  K++  W 
Sbjct: 521 --------GKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWN 572

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
            +I  ++      +A+D F +M   G KP ++    +L ACS    +      L K+   
Sbjct: 573 VMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALR-----LGKEVHS 627

Query: 420 YNIKPKMQHYG----CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           + +K  +         ++D+  + G +E+S N    +    D ++W+ ++
Sbjct: 628 FALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVN-EKDEAVWNVII 676



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 134/293 (45%), Gaps = 31/293 (10%)

Query: 130 LVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL-LSKMGAE 187
           L TR + + + CG   +   +FD    +D+  +N ++S Y+   ++R+ + L L  + A 
Sbjct: 130 LSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSAT 189

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
            ++PD  T+  +  A   + D+E+G+ +H    ++       + N L+ MY KCG +  A
Sbjct: 190 DLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESA 249

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLISWTLMISGMLN 304
            K+     +   ++V W +++    ++    E   +F  ++   E  L+     +  ++ 
Sbjct: 250 VKVF--ETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVI- 306

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSE 349
                   +CA++G +  G+ VH    K     +++++N           +  A  LF  
Sbjct: 307 -------PACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDM 359

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACS 401
              KNV  W ++I  Y+  G  +   +L  EM+ E   + ++VT + +L ACS
Sbjct: 360 NGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 136/310 (43%), Gaps = 20/310 (6%)

Query: 172 GMYREGLGLLSKMGAEG-VSPDEVTMVS---LISARTKLRDLEMGKNLHLFLEES-TMKI 226
           G   + L LL      G VS  +++  +   L+ A    +++ +G+ +H  +  S  ++ 
Sbjct: 67  GNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRN 126

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
              L   ++ MY  CG   +++ +    +  E D+ L+  L+SGY ++    +A  LF E
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAK--EKDLFLYNALLSGYSRNALFRDAISLFLE 184

Query: 287 MVERNLIS---WTL-MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN--- 339
           ++    ++   +TL  ++      A+ +        AL  G +   ++    I++     
Sbjct: 185 LLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCG 244

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM---EETGTKPDQVTFIA 395
            +E A  +F  +  +N+  W SV+ A +  G   +   +F  +   EE G  PD  T + 
Sbjct: 245 FVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVT 304

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           ++ AC+  G V  G        ++  I  ++     +VD+  + G+L E A  +  M   
Sbjct: 305 VIPACAAVGEVRMGMVVHGLAFKL-GITEEVTVNNSLVDMYSKCGYLGE-ARALFDMNGG 362

Query: 456 PDVSIWSSLL 465
            +V  W++++
Sbjct: 363 KNVVSWNTII 372



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 26/236 (11%)

Query: 39  PVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + V  V  +CS +      + +HS  +  +L  D  ++  + +     G +  +Q I
Sbjct: 601 PQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNI 660

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT------------VLLNKCGKL 143
             + +E +  +WN II    I+G+  +   ++  +  +             +  N  G +
Sbjct: 661 FDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLV 720

Query: 144 KEVCQLFDKLPNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
            E  +   ++ N   +      +  ++      G   E L L+++M  E   PD     S
Sbjct: 721 TEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDE---PDSGIWSS 777

Query: 199 LISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           L+S+     DLE+G+ +    LE    K    +L  L ++Y   GK  E +K+  R
Sbjct: 778 LLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVL--LSNLYAGLGKWDEVRKVRQR 831


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 180/444 (40%), Positives = 247/444 (55%), Gaps = 54/444 (12%)

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-------------- 301
           + E  +V  T +++ Y K    DEAR LFD + ER+ I W +MI G              
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 302 --MLNQDAEFK-------YKSCASIGALYHGIWVHVYIKKNQISID-------------- 338
             MLN               +C   GAL  G WVH YI+ N I I+              
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 339 -NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
            ++E A  +F  IS K+V  W S++  YAM G +Q A+ LF EM   G +P  +TFI +L
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           +ACSH GLV EG+ F       Y I+PK++HYGCMV+LLGRAG+LEE+   + +M I  D
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
             +W +LL ACR H N+ L E   ++L   +  N G +VLL+NIYA AG  + ++R+R  
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
           +++ G +K+ G S IE    VH+F +GD+ +P S EIY ML EI   L+  G        
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIV 360

Query: 571 --------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                   +E SL  H E+LA+AFGLI+T   TTI+IV NLR+C DCH+  K+ S++  R
Sbjct: 361 LHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGR 420

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           ++V+RD  RFH F  G CSC DYW
Sbjct: 421 KVVMRDRNRFHHFVNGLCSCGDYW 444


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 185/564 (32%), Positives = 295/564 (52%), Gaps = 58/564 (10%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTM 196
            KC  L++   LFD++P RD +SW ++++ Y    +  + L +   M   + + PD    
Sbjct: 48  GKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVY 107

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            +L+ A   L  L +GK +H     S       + + LVDMY KCG    A+ +     +
Sbjct: 108 ATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILV 167

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKY- 311
                V WT ++SGY +S  +DEA  LF     RNL SWT +ISG++      D  + + 
Sbjct: 168 KTS--VSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFI 225

Query: 312 -------------------KSCASIGALYHGIWVH-----------VYIKKNQISI---- 337
                               +CA++  L  G  +H           ++I    + +    
Sbjct: 226 EMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKC 285

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
            +I  A ++F+ +  ++V  WTS+I   A  G A++A+DL+ +M     KP++VTF+ L+
Sbjct: 286 SDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLI 345

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
            ACSH GLV +G          Y I P +Q + C +DLL R+GHL E+ + I +MP  PD
Sbjct: 346 YACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPD 405

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
              W++LL AC+ H N ++       L   +      +VLL+N+YA AG+ + MSR+R  
Sbjct: 406 EPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKL 465

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS-- 574
           + DM +K++ GYS I+ G     F +G+  +P  +EI+ +L E++  ++++G + +TS  
Sbjct: 466 MTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYV 525

Query: 575 -------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                          H ER AVA+GL+     T IRIV NLRICGDCH+F+K+TS + ++
Sbjct: 526 LHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHK 585

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           EI++RD  R+H F+ G+CSC D+W
Sbjct: 586 EIIVRDATRYHHFKDGRCSCNDFW 609


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 291/546 (53%), Gaps = 49/546 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEV 194
           + +KCG L E C++FD++P +D ++W  MI  Y   G     +     M  EG V  D+ 
Sbjct: 85  MYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQH 144

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
              S++SA   L+D  + K++H  + ++  ++  ++ N L+DMY K   +  A ++L + 
Sbjct: 145 VFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL-KI 203

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFK 310
           +    +VV  T+++ GY++++  +EA  ++ E+    VE N  +++ MI G         
Sbjct: 204 DPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG--------- 254

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNV 355
              CA    L  G  +H  + K  +  D+               I L+  LF+EI  +  
Sbjct: 255 ---CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 311

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W +VI  +A  GH ++AI  F  M  +G +P+ + F++LL+ACSH GLVDEG  +   
Sbjct: 312 IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYS 371

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
               + I+PK +HY C++D  GRAG L+E+  FI+ MPI P+   W SLL ACR   + +
Sbjct: 372 MKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKE 431

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           L E A ++L + +P N G HV L+ IYA  G+ +D+  +R  +RD  +KK  G+S ++  
Sbjct: 432 LGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSN 491

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRE 579
              H F S D  +P  ++IY  L E+   ++++G + +TS                 H E
Sbjct: 492 KKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSE 551

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           R+AVAF LIS      I +  NLRIC DCH+  K   +V  R+I++RDN RFH F  G+C
Sbjct: 552 RIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRC 611

Query: 640 SCRDYW 645
           SC DYW
Sbjct: 612 SCGDYW 617



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 156/371 (42%), Gaps = 20/371 (5%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +P R+ +SW T++S  +   M+ + L   + M   GV+P    + S   A   L     G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
             LH             + + L DMY KCG + EA ++    ++ + D V WT ++ GY 
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFD--QMPQKDAVAWTAMIDGYA 118

Query: 273 KSNERDEARRLFDEMVERNLISW-------TLMISGMLNQDAEFKYKSCASIGALYHGIW 325
           K+   + A   F +M    L+          L  SG L      K   C    A   G  
Sbjct: 119 KNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKA---GFE 175

Query: 326 VHVYIKKNQI-----SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
           + V ++   I     S+D    +  L  +    NV   TS+I  Y      ++A+ +++E
Sbjct: 176 LEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVE 235

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           +   G +P++ TF +++  C+   L+++G    ++  +   I+        +VD+ G+ G
Sbjct: 236 LRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYGKCG 294

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLA 499
            +  S      +    D++ W++++     H + + A  AF  +  +    N  A V L 
Sbjct: 295 LISLSMQLFNEIEYRTDIA-WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLL 353

Query: 500 NIYAKAGRLDD 510
              + AG +D+
Sbjct: 354 TACSHAGLVDE 364


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 291/546 (53%), Gaps = 49/546 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEV 194
           + +KCG L E C++FD++P +D ++W  MI  Y   G     +     M  EG V  D+ 
Sbjct: 166 MYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQH 225

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
              S++SA   L+D  + K++H  + ++  ++  ++ N L+DMY K   +  A ++L + 
Sbjct: 226 VFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL-KI 284

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFK 310
           +    +VV  T+++ GY++++  +EA  ++ E+    VE N  +++ MI G         
Sbjct: 285 DPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG--------- 335

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNV 355
              CA    L  G  +H  + K  +  D+               I L+  LF+EI  +  
Sbjct: 336 ---CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 392

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W +VI  +A  GH ++AI  F  M  +G +P+ + F++LL+ACSH GLVDEG  +   
Sbjct: 393 IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYS 452

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
               + I+PK +HY C++D  GRAG L+E+  FI+ MPI P+   W SLL ACR   + +
Sbjct: 453 MKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKE 512

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           L E A ++L + +P N G HV L+ IYA  G+ +D+  +R  +RD  +KK  G+S ++  
Sbjct: 513 LGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSN 572

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRE 579
              H F S D  +P  ++IY  L E+   ++++G + +TS                 H E
Sbjct: 573 KKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSE 632

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           R+AVAF LIS      I +  NLRIC DCH+  K   +V  R+I++RDN RFH F  G+C
Sbjct: 633 RIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRC 692

Query: 640 SCRDYW 645
           SC DYW
Sbjct: 693 SCGDYW 698



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 163/389 (41%), Gaps = 20/389 (5%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
            + + C  L    +LF  +P R+ +SW T++S  +   M+ + L   + M   GV+P   
Sbjct: 64  TMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRF 123

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            + S   A   L     G  LH             + + L DMY KCG + EA ++    
Sbjct: 124 ALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFD-- 181

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW-------TLMISGMLNQDA 307
           ++ + D V WT ++ GY K+   + A   F +M    L+          L  SG L    
Sbjct: 182 QMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGW 241

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQI-----SIDNIELAYDLFSEISEKNVYLWTSVI 362
             K   C    A   G  + V ++   I     S+D    +  L  +    NV   TS+I
Sbjct: 242 LSKSIHCCVTKA---GFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMI 298

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             Y      ++A+ +++E+   G +P++ TF +++  C+   L+++G    ++  +   I
Sbjct: 299 DGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLI 358

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +        +VD+ G+ G +  S      +    D++ W++++     H + + A  AF 
Sbjct: 359 RDSFVG-STLVDMYGKCGLISLSMQLFNEIEYRTDIA-WNAVINVFAQHGHGREAIQAFD 416

Query: 483 HLTETD-PLNDGAHVLLANIYAKAGRLDD 510
            +  +    N  A V L    + AG +D+
Sbjct: 417 RMIYSGIRPNHIAFVSLLTACSHAGLVDE 445



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 22/233 (9%)

Query: 190 SPDEVTMV---SLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIG 245
           +PD  T V   SL+ +  +  DL  G+ LH  L  S    + + L N+L+ MY  C  + 
Sbjct: 14  APDAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLA 73

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
            A +L     +   + V WTTLVSG +  N            + R  ++ T        +
Sbjct: 74  SALRLFA--AMPRRNAVSWTTLVSG-LSQNLMHADALAAFAAMRRAGVAPTRFALSSAAR 130

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD----------LFSEISEKNV 355
            A          GA  H + V +          N+   Y           +F ++ +K+ 
Sbjct: 131 AAAALGAP--LPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDA 188

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVD 407
             WT++I  YA  G  + A+  F +M+  G    DQ  F ++LSA   GGL D
Sbjct: 189 VAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA--SGGLKD 239


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 188/553 (33%), Positives = 297/553 (53%), Gaps = 55/553 (9%)

Query: 135 VLLNKCGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
            +  +CG ++E  ++FD +    RDV+SWN M+S Y      ++ + L  +M    + PD
Sbjct: 203 TMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQ---LRPD 259

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           +VT VSL+SA +   D+ +G+ LH  +    ++ +  + N LV MY KCG   EA+ +  
Sbjct: 260 KVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFD 319

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE-------RNLISWTLMISGMLNQ 305
           + E  +  ++ WTT++S YV+     EA  LF +M+E       + +    L    +LN 
Sbjct: 320 KME--QRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILN- 376

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEI 350
                  +CA + AL  G  V        +S D                IE A  +F  +
Sbjct: 377 -------ACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAV 429

Query: 351 -SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
            S  +V LW ++IA YA  G + +A+ LF  ME  G +PD  +F+++L ACSH GL D+G
Sbjct: 430 CSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQG 489

Query: 410 YDFLSKKSRVY-NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
             + +  +  Y N+   +QH+GC+ DLLGR G L+E+  F+  +P+ PD   W+SLL AC
Sbjct: 490 KSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAAC 549

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H+++K A+     L   +P     +V L+NIYA+  +   ++++R  + + G+KK+ G
Sbjct: 550 RNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERG 609

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------QETS- 574
            S IE G ++H F +GD  +P + EI   L ++   +++ G              QE   
Sbjct: 610 VSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKER 669

Query: 575 --LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
               H ERLA+A GLIST   T +R+  NLR+C DCH+  K+ S++  R+IV+RD  RFH
Sbjct: 670 LLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFH 729

Query: 633 RFQGGQCSCRDYW 645
            F+ G+CSC+DYW
Sbjct: 730 LFKDGKCSCQDYW 742



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 159/354 (44%), Gaps = 31/354 (8%)

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FD L  R++ SW  +++ +   G  +E L  L +M  +GV PD VT ++ + +      L
Sbjct: 15  FDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESL 74

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
             G  +H  + +S ++I   + N L++MY KCG +  A+++  + E    +V+ W+ +  
Sbjct: 75  RDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTR-NVISWSIMAG 133

Query: 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY 329
            +       EA R F  M+   L+      S M+         +C+S   +  G  +H  
Sbjct: 134 AHALHGNVWEALRHFRFML---LLGIKATKSAMVT-----ILSACSSPALVQDGRMIHSC 185

Query: 330 IK----KNQISIDN-----------IELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQ 372
           I     ++++ + N           +E A  +F  + E  ++V  W  +++ Y      +
Sbjct: 186 IALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGK 245

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
            AI L+  M+    +PD+VT+++LLSACS    V  G   L K+     ++  +     +
Sbjct: 246 DAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGR-VLHKQIVNDELEKNVIVGNAL 301

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           V +  + G   E+      M     +S W++++ A    + V  A H F+ + E
Sbjct: 302 VSMYAKCGSHTEARAVFDKMEQRSIIS-WTTIISAYVRRRLVAEACHLFQQMLE 354



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 119/310 (38%), Gaps = 76/310 (24%)

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGM---------------LNQDAE------- 308
           Y   +   +A+  FD + +RNL SWT +++                 + QD         
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTF 61

Query: 309 -FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISE 352
                SC    +L  GI +H  +  +++ ID               ++  A  +F+++  
Sbjct: 62  ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMER 121

Query: 353 -KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
            +NV  W+ +  A+A+ G+  +A+  F  M   G K  +   + +LSACS   LV +G  
Sbjct: 122 TRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRM 181

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE----------------SANFITS---- 451
             S  + +   + ++     ++ + GR G +EE                S N + S    
Sbjct: 182 IHSCIA-LSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 452 -------------MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV-- 496
                        M + PD   + SLL AC   ++V L     K +   D L     V  
Sbjct: 241 NDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIV-NDELEKNVIVGN 299

Query: 497 LLANIYAKAG 506
            L ++YAK G
Sbjct: 300 ALVSMYAKCG 309


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 183/539 (33%), Positives = 290/539 (53%), Gaps = 42/539 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMV 197
           K G  ++  +LFD++PN+D++SWN+++S  +  G     L    +M  E G  P+EVT++
Sbjct: 109 KLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLL 168

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S++SA   +  L+ GK+LH  + +  M     ++N L++MY K G +  A +L    E+ 
Sbjct: 169 SVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF--EEMP 226

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
              +V W ++V  +  +   ++   LF+ M    +      +  +L        ++C   
Sbjct: 227 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALL--------RACTDT 278

Query: 318 GALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVI 362
           G       +H YI +   + D                +  + D+F EI +++   WT+++
Sbjct: 279 GLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAML 338

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           A YA+    ++AI LF  M + G + D VTF  LLSACSH GLV+EG  +    S VY +
Sbjct: 339 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 398

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +P++ HY CMVDLLGR+G LE++   I SMP+ P   +W +LL ACR + NV+L +   +
Sbjct: 399 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 458

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L   DP +   +++L+NIY+ AG   D S++R  +++  L +  G S IE G  +H+F 
Sbjct: 459 QLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFV 518

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGL------------QETSL----QHRERLAVAFG 586
            GD  +P S+EI+  L E+   +++ G             +E  +    +H E+LA+AFG
Sbjct: 519 VGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFG 578

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           L+ T     + I  NLRICGDCHS  K  S +  R I+IRD+ RFH F  G CSCRDYW
Sbjct: 579 LLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 41/218 (18%)

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRY--EIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           S++  LV     C  +     +  R    ++  D  +   LVS Y K    ++A+RLFDE
Sbjct: 63  SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 122

Query: 287 MVERNLISWTLMISGM---------LNQDAEFKYKS---------------CASIGALYH 322
           M  ++L+SW  ++SG+         LN     + +S               CA +GAL  
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182

Query: 323 GIWVHVYIKKNQIS---------------IDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H  + K  +S               +  ++ A  LF E+  +++  W S++  +  
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 242

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
            G+A+K +DLF  M+  G  PDQ T +ALL AC+  GL
Sbjct: 243 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL 280


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 186/508 (36%), Positives = 285/508 (56%), Gaps = 56/508 (11%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           WN+ +          + + L  ++    V PD  T  S++ A   L DL  G+ LH  +E
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           +   + +  L N +V +Y  CG++GEA+ L  +  + + DVV W  +++  +K  + + A
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEK--MPQRDVVTWNIMIAQLIKQGDHEGA 213

Query: 281 RRLFDEMVERNLISWTLMISGMLN--------------QDAEFK---------YKSCASI 317
             LF  M ERN+ SWT MI+G +               ++A  K           +CA +
Sbjct: 214 YDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADL 273

Query: 318 GALYHGIWVHVYIK----KNQISIDN-----------IELAYDLFSEISEKNVYLWTSVI 362
           GAL  G+ +H Y      K  + I N           +E A  +F E+ E+ V  W+++I
Sbjct: 274 GALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMI 333

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
              AM G A++A+ LF +M + G +P+ VTFI LL ACSH GL+ EG  F +  +R Y I
Sbjct: 334 GGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGI 393

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
            P+++HYGCMVDLL RAG L E+  FI +MP+ P+  +W +LL ACR H+NV++AE A K
Sbjct: 394 IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
           HL E DPLNDG +V+L+NIYA+AGR +D +R+R  ++D  +KK  G+S I   G VH+F 
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFV 513

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFG 586
           +G+  +P +E+I+    E+   ++ +G +  TS+               +H E+LA+ FG
Sbjct: 514 AGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFG 573

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKV 614
           L++T  +T IRI+ NLRIC DCHS  ++
Sbjct: 574 LMNTPAETPIRIMKNLRICEDCHSAFQI 601


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 175/521 (33%), Positives = 285/521 (54%), Gaps = 43/521 (8%)

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
           D+I+WN +++ +T  G  +  L    +M + G+ P+  T+   ++A  ++R+L++GK +H
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIH 522

Query: 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
            ++  + +++S  + + L+ MY  C  +  A  +    E+   DVV+W +++S   +S  
Sbjct: 523 GYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFS--ELSTRDVVVWNSIISACAQSGR 580

Query: 277 RDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
              A  L  EM   N+ ++   M+S +          +C+ + AL  G  +H +I +  +
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSAL---------PACSKLAALRQGKEIHQFIIRCGL 631

Query: 336 SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
              N               I+ +  +F  + ++++  W  +I+ Y M G    A++LF +
Sbjct: 632 DTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQ 691

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
               G KP+ +TF  LLSACSH GL++EG+ +       Y + P ++ Y CMVDLL RAG
Sbjct: 692 FRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAG 751

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
              E+  FI  MP  P+ ++W SLL ACR H N  LAE+A ++L E +P + G +VL+AN
Sbjct: 752 QFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMAN 811

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           IY+ AGR +D ++IR  +++ G+ K  G S IE    +H F  GD  +P  E+I   +  
Sbjct: 812 IYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMES 871

Query: 561 IEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRI 604
           +   +++ G                +E SL  H E++A+AFGLIST+  T +RI+ NLR+
Sbjct: 872 LYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRV 931

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CGDCHS  K  S+V  R+I++RDN RFH F  G CSC DYW
Sbjct: 932 CGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/494 (23%), Positives = 218/494 (44%), Gaps = 106/494 (21%)

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
           G +P+   WN+II     +G  +E    +L +          G LK      D  PN  V
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEM----------GGLK------DFKPN--V 327

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           +SW  +I+     G   E L +  KM  EGV P+ +T+ S +SA T L  L  G+ +H +
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 387

Query: 219 LEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
             +   ++   LL  N LVD Y KC  +  A++  G   I + D+V W  +++GY     
Sbjct: 388 CIK-VEELDSDLLVGNSLVDYYAKCRSVEVARRKFGM--IKQTDLVSWNAMLAGYALRGS 444

Query: 277 RDEARRLFDEM----VERNLISWTLMISGML---NQDAEFKY------------------ 311
            +EA  L  EM    +E ++I+W  +++G     +  A  ++                  
Sbjct: 445 HEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISG 504

Query: 312 --KSCASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLFSEISEKN 354
              +C  +  L  G  +H Y+ +N I +               D++E+A  +FSE+S ++
Sbjct: 505 ALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRD 564

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF-- 412
           V +W S+I+A A +G +  A+DL  EM  +  + + VT ++ L ACS    + +G +   
Sbjct: 565 VVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQ 624

Query: 413 --------------------------LSKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEE 444
                                     + K  R++++ P+  +  +  M+ + G  G   +
Sbjct: 625 FIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMD 684

Query: 445 SANFIT---SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH--LTETDPLNDGA---HV 496
           + N      +M + P+   +++LL AC    +  L E  +K+  + +T+   D A   + 
Sbjct: 685 AVNLFQQFRTMGLKPNHITFTNLLSAC---SHSGLIEEGWKYFKMMKTEYAMDPAVEQYA 741

Query: 497 LLANIYAKAGRLDD 510
            + ++ ++AG+ ++
Sbjct: 742 CMVDLLSRAGQFNE 755



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/447 (21%), Positives = 183/447 (40%), Gaps = 111/447 (24%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +++  ++FDK+  R+V SW  ++  Y  +G Y E + L   M  EGV PD      + 
Sbjct: 138 GCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVF 197

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV- 259
            A ++L++  +GK+++ ++     + +  +   ++DM+ KCG++  A++     E  +V 
Sbjct: 198 KACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVF 257

Query: 260 --------------------------------DVVLWTTLVSGYVKSNERDEARRLFDEM 287
                                           D V W  ++SGY +S + +EA + F EM
Sbjct: 258 MWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEM 317

Query: 288 -----VERNLISWTLMISGMLNQDAEFK-----------------------YKSCASIGA 319
                 + N++SWT +I+G      +F+                         +C ++  
Sbjct: 318 GGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSL 377

Query: 320 LYHGIWVHVY-IKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           L HG  +H Y IK  ++  D               ++E+A   F  I + ++  W +++A
Sbjct: 378 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA 437

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            YA+ G  ++AI+L  EM+  G +PD +T+  L++  +  G      +F  +        
Sbjct: 438 GYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQR-------- 489

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
                                    + SM + P+ +  S  L AC   +N+KL +    +
Sbjct: 490 -------------------------MHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 484 LTETD-PLNDGAHVLLANIYAKAGRLD 509
           +      L+ G    L ++Y+    L+
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLE 551



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 148/326 (45%), Gaps = 29/326 (8%)

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMV--SLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
           G+      LLS M  +  +PDE   +  S++    KL +L +G  +H  L  + + +   
Sbjct: 68  GVLNNAAMLLSSM--DLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEF 125

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           L + L+++Y + G + +A+++  +  + E +V  WT ++  Y    + +E  +LF  MV 
Sbjct: 126 LGSRLLEVYCQTGCVEDARRMFDK--MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN 183

Query: 290 RNLISWTLMISGMLNQDAEFK--------YKSCASIG----ALYHGIWVHVYIKKNQISI 337
             +     +   +    +E K        Y    SIG    +   G  + ++IK  ++ I
Sbjct: 184 EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDI 243

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
                A   F EI  K+V++W  +++ Y   G  +KA+    +M+ +G KPDQVT+ A++
Sbjct: 244 -----ARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAII 298

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM---PI 454
           S  +  G  +E   +  +   + + KP +  +  ++    + G+  E+ +    M    +
Sbjct: 299 SGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV 358

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHA 480
            P+    +S + AC    N+ L  H 
Sbjct: 359 KPNSITIASAVSAC---TNLSLLRHG 381



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  +CG +++  ++FD +P RD++SWN MIS Y   G   + + L  +    G+ P+ +T
Sbjct: 644 MYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHIT 703

Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
             +L+SA +    +E G K   +   E  M  +      +VD+  + G+  E  + + + 
Sbjct: 704 FTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM 763

Query: 255 EIDEVDVVLWTTLVSG 270
              E +  +W +L+  
Sbjct: 764 PF-EPNAAVWGSLLGA 778


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 189/550 (34%), Positives = 281/550 (51%), Gaps = 62/550 (11%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           PN  VI+WN ++S     G  R+ +  L +M  EG  PD   +   +SA   + D+ +G+
Sbjct: 119 PN--VITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGE 176

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            LH ++ ++  ++   +   L+DMY KCG+  E  ++    E   +DV     LV+G  +
Sbjct: 177 QLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFD--ESSHMDVASCNALVAGLSR 234

Query: 274 SNERDEARRLFDEMVER----NLISWTLMISGMLNQDAEFK------------------- 310
           + +  EA RLF E V R    N++SWT +++  +    + +                   
Sbjct: 235 NAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVT 294

Query: 311 ----YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 + A+I AL HG   H +  +     D                +  A  +F  + 
Sbjct: 295 IPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMP 354

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
            +NV  W ++I  YAM G A+ A+ LF  M+ +  KPD VTF  +L ACS  G  +EG  
Sbjct: 355 YRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRS 414

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           + ++    + I P+M+HY CMV LLGRAG L+++ + I  MP  PD  IW SLL +CR H
Sbjct: 415 YFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVH 474

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
            NV LAE A ++L + +P N G +VLL+NIYA     D ++R+R  ++ +GLKK+ G S 
Sbjct: 475 GNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSW 534

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------L 575
           IE    VH   +GD  +P    I   L  + M +++ G   ++                 
Sbjct: 535 IEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILS 594

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LAVA GLISTS  T ++++ NLRICGDCH  MK  S    REI +RD  RFH F+
Sbjct: 595 VHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFK 654

Query: 636 GGQCSCRDYW 645
            G+CSC DYW
Sbjct: 655 DGKCSCADYW 664


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 182/539 (33%), Positives = 288/539 (53%), Gaps = 42/539 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMV 197
           K G  ++  +LFD++PN+D++SWN+++S  +  G     L    +M  E G  P+EVT++
Sbjct: 166 KLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLL 225

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S++SA   +  L+ GK+LH  + +  M     ++N L++MY K G +  A +L    E+ 
Sbjct: 226 SVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF--EEMP 283

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
              +V W ++V  +  +   ++   LF+ M    +      +  +L        ++C   
Sbjct: 284 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALL--------RACTDT 335

Query: 318 GALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVI 362
           G       +H YI +   + D                +  + D+F EI +++   WT+++
Sbjct: 336 GLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAML 395

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           A YA+    ++AI LF  M + G + D VTF  LLSACSH GLV+EG  +    S VY +
Sbjct: 396 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 455

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +P++ HY CMVDLLGR+G LE++   I SMP+ P   +W +LL ACR + NV+L +   +
Sbjct: 456 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 515

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L   DP +   +++L+NIY+ AG   D S++R  +++  L +  G S IE G  +H+F 
Sbjct: 516 QLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFV 575

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERLAVAFG 586
            GD  +P S+EI+  L E+   +++ G    +                 +H E+LA+AFG
Sbjct: 576 VGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFG 635

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           L+ T     + I  NLRICGDCHS  K  S +  R I+IRD+ RFH F  G CSCRDYW
Sbjct: 636 LLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 41/242 (16%)

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY--EIDEVDVV 262
           + +     K   +F E S   +  S++  LV     C  +     +  R    ++  D  
Sbjct: 96  QFKRFNTNKGCCIFREASQFIVVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGF 155

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------LNQDAEFKYKS 313
           +   LVS Y K    ++A+RLFDEM  ++L+SW  ++SG+         LN     + +S
Sbjct: 156 IGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTES 215

Query: 314 ---------------CASIGALYHGIWVHVYIKKNQIS---------------IDNIELA 343
                          CA +GAL  G  +H  + K  +S               +  ++ A
Sbjct: 216 GRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAA 275

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             LF E+  +++  W S++  +   G+A+K +DLF  M+  G  PDQ T +ALL AC+  
Sbjct: 276 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDT 335

Query: 404 GL 405
           GL
Sbjct: 336 GL 337


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 297/545 (54%), Gaps = 51/545 (9%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            L    G L++  ++F+ +  + ++SWNT+IS +T  G   E L L  +M  +G+ PD  +
Sbjct: 544  LYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYS 603

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            + S +SA   +   ++G  +H ++ + T   +  + N L+DMY KCG +  A K+  +  
Sbjct: 604  LASSLSACGTISFSQLGAQIHGYIIK-TGNFNDFVQNALIDMYAKCGFVHSANKMFEK-- 660

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKY 311
            I E  +V W +++ G+ ++    EA  LFD+M    V+ + +++  +I            
Sbjct: 661  IKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVI------------ 708

Query: 312  KSCASIGALYHGIWVH----VYIKKNQISIDN-----------IELAYDLFSEISEKNVY 356
            ++C+ +G L  G WVH    +Y  +    +D            +++A+ +F  +SE+++ 
Sbjct: 709  QACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIV 768

Query: 357  LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
             W+ +IA Y M G     I LF +M  +G KP+ +TF+ +LSACSH G V+EG  + +  
Sbjct: 769  SWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM 828

Query: 417  SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            S  + ++PK  H+ CMVDLL RAG L  +   ITS+P P + SIW +LL  CR H+ + +
Sbjct: 829  SE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDI 887

Query: 477  AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
             +   K+L + D  + G + LL+NIYA+ G  D   ++R  ++  GL+K  GYS IE   
Sbjct: 888  IKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDK 947

Query: 537  FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ----------------GLQETSLQHRER 580
             +++F  GD  +  +++IY  L      +  Q                  +   + H E+
Sbjct: 948  KIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEK 1007

Query: 581  LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
            LA+AFG+I+T   TT+RI  NLR+C DCHSF K+ S++  REI++RD  RFH F+ G CS
Sbjct: 1008 LAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCS 1067

Query: 641  CRDYW 645
            C DYW
Sbjct: 1068 CNDYW 1072



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/462 (23%), Positives = 206/462 (44%), Gaps = 50/462 (10%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           + C++     ++H+HL  T L R P  ST++ E     G    ++++     +P+  +W 
Sbjct: 356 KRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWG 415

Query: 109 SIIENQLINGYPQEVFAIYLYLV--TRTVLLNKC-GKLKEVCQLFDKLPNRDVISWNTMI 165
            +I+  +  G+ +E  ++Y  +V   +T + N     + + C  F  L            
Sbjct: 416 VLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDL------------ 463

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM--------GKNLHL 217
           S     G   EGL + S+M +E V PD VTM+S+  A ++L  L +        G+++H 
Sbjct: 464 SVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHG 523

Query: 218 FLEESTMKISGSLLN-YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
           F+    M      L   L+++Y   G + +  K+     I E  ++ W TL+S + ++ +
Sbjct: 524 FVIRRAMDPELDFLGPALMELYADTGNLRDCHKVF--ETIKEKTILSWNTLISIFTRNGQ 581

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
            +EA  LF +M  + L+  +  ++  L         +C +I     G  +H YI K    
Sbjct: 582 PEEALLLFVQMQTQGLMPDSYSLASSL--------SACGTISFSQLGAQIHGYIIKTGNF 633

Query: 337 IDNIE--------------LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
            D ++               A  +F +I EK++  W S+I  ++  G++ +AI LF +M 
Sbjct: 634 NDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMY 693

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
               K D++TF++++ ACSH G +++G  ++  K  +Y ++        + D+  + G L
Sbjct: 694 MNCVKMDKLTFLSVIQACSHLGYLEKG-KWVHHKLIMYGLRKDSYLDTALTDMYSKCGEL 752

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           + +      M     VS WS ++     H  +      F  +
Sbjct: 753 QMAHGVFDRMSERSIVS-WSVMIAGYGMHGQINATISLFNQM 793



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T + +KCG+L+    +FD++  R ++SW+ MI+ Y   G     + L ++M   G+ P++
Sbjct: 743 TDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPND 802

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           +T + ++SA +    +E GK     + E  ++        +VD+  + G +  A +++  
Sbjct: 803 ITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITS 862

Query: 254 YEIDEVDVVLWTTLVSG 270
                 +  +W  L++G
Sbjct: 863 LPF-PANSSIWGALLNG 878


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 198/633 (31%), Positives = 324/633 (51%), Gaps = 64/633 (10%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           ++++  S   +D   +IH  ++         + + + +     G +  A Q+  +  E  
Sbjct: 144 MLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERN 203

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           + ++N++I   L                       + G +K+  +LF  +  RD ISW T
Sbjct: 204 VVMYNTMITGLL-----------------------RSGMVKDSKRLFHGMKERDSISWTT 240

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MI+     G+  E + L   M  EG++ D+ T  S+++A   LR L+ GK +H  +  S 
Sbjct: 241 MITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSG 300

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
              +  + + LVDMY KC  +  A+ +  R  +   +VV WT ++ GY ++   +EA R+
Sbjct: 301 YNHNVFVGSALVDMYCKCRSVRYAEAVFKR--MANKNVVSWTAMLVGYGQNGFSEEAVRV 358

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH-----------VYIKK 332
           F +M +RN I       G +         SCA++ +L  G   H           + +  
Sbjct: 359 FCDM-QRNGIEPDDFTLGSV-------ISSCANLASLEEGAQFHCQALVSGLISFITVSN 410

Query: 333 NQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
             I++     +IE +  LF E+S ++   WT++++ YA  G A + IDLF  M   G KP
Sbjct: 411 ALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKP 470

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D VTFIA+LSACS  GLV+ G  +     + + I P   HY CM+DL GRAG LEE+ NF
Sbjct: 471 DAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNF 530

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I  MP  PD   W++LL +CR + N ++ + A + L E DP N   ++LL++IYA  G+ 
Sbjct: 531 INKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKW 590

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
            +++++R  +R+ G +K+ G+S I+    V+ F++ D  +P S++IY  L ++   + ++
Sbjct: 591 SNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEE 650

Query: 569 GLQETSL----------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G    +                  H E+LA+AFGL+       IR+V NLR+CGDCH+  
Sbjct: 651 GYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNAT 710

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K  S++  REI++RD  RFH F+ G CSC D+W
Sbjct: 711 KYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 195/418 (46%), Gaps = 66/418 (15%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
           G++ YA+ +  +  +P    WN+++                          +K G L  +
Sbjct: 54  GNITYARHVFDKMPQPNSFSWNTMLS-----------------------AYSKSGDLSTM 90

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMVSLISARTK 205
            ++F  +PNRD +SWN++IS Y   G   E +   + M  +GV + + +T  +++   + 
Sbjct: 91  QEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSS 150

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
              +++G+ +H  + +        + + LVDMY K G +  A ++    E+ E +VV++ 
Sbjct: 151 QGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFD--EVQERNVVMYN 208

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--------------- 310
           T+++G ++S    +++RLF  M ER+ ISWT MI+G++    E +               
Sbjct: 209 TMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAM 268

Query: 311 --------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLF 347
                     +C  + AL  G  +H  I ++  + +               ++  A  +F
Sbjct: 269 DQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVF 328

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             ++ KNV  WT+++  Y   G +++A+ +F +M+  G +PD  T  +++S+C++   ++
Sbjct: 329 KRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLE 388

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           EG  F   ++ V  +   +     ++ L G+ G +E+S      M    +VS W++L+
Sbjct: 389 EGAQFHC-QALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVS-WTALV 444


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 180/540 (33%), Positives = 296/540 (54%), Gaps = 51/540 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L++  ++F+ +  + ++SWNT+IS +T  G   E L L  +M  +G+ PD  ++ S +
Sbjct: 352 GNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSL 411

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           SA   +   ++G  +H ++ + T   +  + N L+DMY KCG +  A K+  +  I E  
Sbjct: 412 SACGTISFSQLGAQIHGYIIK-TGNFNDFVQNALIDMYAKCGFVHSANKMFEK--IKEKS 468

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
           +V W +++ G+ ++    EA  LFD+M    V+ + +++  +I            ++C+ 
Sbjct: 469 LVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVI------------QACSH 516

Query: 317 IGALYHGIWVH----VYIKKNQISIDN-----------IELAYDLFSEISEKNVYLWTSV 361
           +G L  G WVH    +Y  +    +D            +++A+ +F  +SE+++  W+ +
Sbjct: 517 LGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVM 576

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           IA Y M G     I LF +M  +G KP+ +TF+ +LSACSH G V+EG  + +  S  + 
Sbjct: 577 IAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FG 635

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           ++PK  H+ CMVDLL RAG L  +   ITS+P P + SIW +LL  CR H+ + + +   
Sbjct: 636 VEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIE 695

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           K+L + D  + G + LL+NIYA+ G  D   ++R  ++  GL+K  GYS IE    +++F
Sbjct: 696 KNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRF 755

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQ----------------GLQETSLQHRERLAVAF 585
             GD  +  +++IY  L      +  Q                  +   + H E+LA+AF
Sbjct: 756 GPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAF 815

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           G+I+T   TT+RI  NLR+C DCHSF K+ S++  REI++RD  RFH F+ G CSC DYW
Sbjct: 816 GIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 126/549 (22%), Positives = 236/549 (42%), Gaps = 92/549 (16%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           R C++     ++H+HL  T L R P  ST++ E     G    ++++     +P+  +W 
Sbjct: 9   RRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWG 68

Query: 109 SIIENQLINGYPQEVFAIYLYLV--TRTVLLN---------------------------K 139
            +I+  +  G+ +E  ++Y  +V   +T + N                           K
Sbjct: 69  VLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIK 128

Query: 140 CG-------------------KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           CG                    L + C+ FD +P RDV++W++++  +   G   EGL +
Sbjct: 129 CGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDM 188

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
            S+M +E V PD VTM+S+  A ++L  L +G+++H ++    ++ + SL N L+ MY K
Sbjct: 189 FSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGK 248

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
            G +  A++L             WT ++S Y +S    EA  +F +M E  +    + + 
Sbjct: 249 LGDLYSAERLFENVPCRM--TAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMV 306

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID----------------NIELAY 344
           G+L         +CA +G +  G  VH ++ +  +  +                N+   +
Sbjct: 307 GVLC--------ACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCH 358

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F  I EK +  W ++I+ +   G  ++A+ LF++M+  G  PD  +  + LSAC    
Sbjct: 359 KVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTIS 418

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
               G        +  N    +Q+   ++D+  + G +  SAN +        +  W+S+
Sbjct: 419 FSQLGAQIHGYIIKTGNFNDFVQN--ALIDMYAKCGFV-HSANKMFEKIKEKSLVTWNSM 475

Query: 465 LRACRCHQN------VKLAEHAFKHLTETDPLNDGAHVLLANIYAKA--GRLDDMSRIRM 516
           +  C   QN      + L +  + +  + D L       L+ I A +  G L+    +  
Sbjct: 476 I--CGFSQNGYSVEAITLFDQMYMNCVKMDKL-----TFLSVIQACSHLGYLEKGKWVHH 528

Query: 517 KLRDMGLKK 525
           KL   GL+K
Sbjct: 529 KLIMYGLRK 537



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 152/364 (41%), Gaps = 73/364 (20%)

Query: 39  PVSLDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQI---STQVFEFLVFTGDLGYA 92
           P  + ++ V  +C+    + E   +H  +I   +  DP++      + E    TG+L   
Sbjct: 300 PNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAM--DPELDFLGPALMELYADTGNLRDC 357

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN-------------- 138
            ++     E  I  WN++I     NG P+E   +++ + T+ ++ +              
Sbjct: 358 HKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTI 417

Query: 139 --------------------------------KCGKLKEVCQLFDKLPNRDVISWNTMIS 166
                                           KCG +    ++F+K+  + +++WN+MI 
Sbjct: 418 SFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMIC 477

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            ++  G   E + L  +M    V  D++T +S+I A + L  LE GK +H  L    ++ 
Sbjct: 478 GFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRK 537

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
              L   L DMY KCG++  A  +  R  + E  +V W+ +++GY    + +    LF++
Sbjct: 538 DSYLDTALTDMYSKCGELQMAHGVFDR--MSERSIVSWSVMIAGYGMHGQINATISLFNQ 595

Query: 287 MVERNLISWTLMISGMLNQDAEFKY--KSCASIGALYHGIWVHVYIKKNQISIDNIELAY 344
           M+           SG+   D  F +   +C+  GA+  G    +Y   N +S   +E  +
Sbjct: 596 MLG----------SGIKPNDITFMHILSACSHAGAVEEG---KLYF--NSMSEFGVEPKH 640

Query: 345 DLFS 348
           D F+
Sbjct: 641 DHFA 644



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T + +KCG+L+    +FD++  R ++SW+ MI+ Y   G     + L ++M   G+ P++
Sbjct: 546 TDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPND 605

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           +T + ++SA +    +E GK     + E  ++        +VD+  + G +  A +++  
Sbjct: 606 ITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITS 665

Query: 254 YEIDEVDVVLWTTLVSG 270
                 +  +W  L++G
Sbjct: 666 LPF-PANSSIWGALLNG 681


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 209/672 (31%), Positives = 331/672 (49%), Gaps = 105/672 (15%)

Query: 77  TQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP--------QEVFAIYL 128
           TQ+    V T ++  A+++    +    +  +S + NQL++ Y         Q +F   L
Sbjct: 26  TQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKML 85

Query: 129 Y--LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
                +   LL+   K G ++ +   FD++P RD +S+NT I+ ++     +E L L  +
Sbjct: 86  KRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKR 145

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M  EG  P E T+VS+++A  +L DL  GK +H  +       +  + N L DMY KCG+
Sbjct: 146 MQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGE 205

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER-------------------------- 277
           I +A+ L     + + ++V W  ++SGY K+ +                           
Sbjct: 206 IEQARWLFDC--LTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTII 263

Query: 278 ---------DEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYK------------ 312
                    DEARR+F E  E++++ WT M+ G       +DA   +             
Sbjct: 264 AAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSY 323

Query: 313 -------SCASIGALYHGIWVH----VYIKKNQISIDN-----------IELAYDLFSEI 350
                  SCA + +L+HG  VH    +    N + + +           I+ A  +F+ +
Sbjct: 324 TLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
             +NV  W ++I   A  GH + A++LF  M +   KPD VTFI +LSAC H   +++G 
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
           ++    S  + + P + HY CMV+LLGR G +E++   I +M   PD  IWS+LL  C  
Sbjct: 444 EYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICST 503

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
             ++  AE A +HL E DP     +++L+N+YA  GR  D++ +R  ++   +KK  G+S
Sbjct: 504 KGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFS 563

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS---------------- 574
            IE    VH+FTS D  +P SE+IY  LN +   LQ++G    +                
Sbjct: 564 WIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSI 623

Query: 575 LQHRERLAVAFGLISTSEK-TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
             H E+LA+AFGLI      + IRI+ N+RIC DCH FMK  S++  R+I++RD+ RFH 
Sbjct: 624 CFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHH 683

Query: 634 FQGGQCSCRDYW 645
           F  G+CSC D W
Sbjct: 684 FSTGKCSCNDNW 695



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 156/361 (43%), Gaps = 44/361 (12%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           ++IH  +I  N + +  I   + +     G++  A+ +     +  +  WN +I     N
Sbjct: 175 KQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKN 234

Query: 118 GYPQEVFAIYLYL---------VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMI 165
           G P++   +   +         VT + ++    +CG++ E  ++F +   +D++ W  M+
Sbjct: 235 GQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMM 294

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
             Y   G   + L L ++M  E + PD  T+ S++S+  KL  L  G+ +H   +     
Sbjct: 295 VGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVH--GKSILAG 352

Query: 226 ISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           ++ +LL  + L+DMY KCG I +A+ +     +   +VV W  ++ G  ++    +A  L
Sbjct: 353 LNNNLLVSSALIDMYSKCGFIDDARSVFNL--MPTRNVVSWNAMIVGCAQNGHDKDALEL 410

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA 343
           F+ M+++      +   G+L+              A  H  W    I++ Q   D+I   
Sbjct: 411 FENMLQQKFKPDNVTFIGILS--------------ACLHCNW----IEQGQEYFDSISNQ 452

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
           + +   +       +  ++      G  ++A+ L   M      PD + +  LLS CS  
Sbjct: 453 HGMTPTLDH-----YACMVNLLGRTGRIEQAVALIKNMAH---DPDFLIWSTLLSICSTK 504

Query: 404 G 404
           G
Sbjct: 505 G 505


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 185/597 (30%), Positives = 303/597 (50%), Gaps = 93/597 (15%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG+      +FD++P ++V+ +N MI  Y +  +Y + L +   M   G+ PD  T   +
Sbjct: 84  CGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCV 143

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A +   DL +G  +H  +    + ++  + N L+ MY KCG + EA ++L +      
Sbjct: 144 LKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCR-- 201

Query: 260 DVVLWTTLVSGYVKSNERDEA-------------------------------------RR 282
           DVV W +LV+G  ++ + D+A                                     + 
Sbjct: 202 DVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKE 261

Query: 283 LFDEMVERNLISWTLMISGMLNQDAEFK-----------------------YKSCASIGA 319
           +F ++  ++L+SW +MI+  +N     +                         +C  + A
Sbjct: 262 MFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSA 321

Query: 320 LYHGIWVHVYIKKNQIS----IDN-----------IELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H Y+ + ++     ++N           +E A ++F ++  ++V  WTS+I+A
Sbjct: 322 LLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISA 381

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           Y M G  + A+ LF  M++ G  PD + F+++LSACSH GL+DEG  +    +    I P
Sbjct: 382 YGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVP 441

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +++H+ CMVDLLGRAG ++E+  FI  MP+ P+  +W +LL ACR + N+ +   A   L
Sbjct: 442 RIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQL 501

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            +  P   G +VLL+NIYAKAGR +D++ +R  ++  G+KK  G S  E    VH F +G
Sbjct: 502 FQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAG 561

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLI 588
           D  +P S++IY  L+     +++ G                +E  L  H E+LA+AF ++
Sbjct: 562 DQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAIL 621

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +T+  + IRI  NLR+CGDCH   K+ S++  REI IRD  RFH F  G CSC DYW
Sbjct: 622 NTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 202/705 (28%), Positives = 348/705 (49%), Gaps = 91/705 (12%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFE 81
           LG+  ++    +   V P  + +++    C++I + + IH  +  + L +   +ST +  
Sbjct: 209 LGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALAS 268

Query: 82  FLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV------TRTV 135
                G L  A+++  +  E ++  WN+++     +G+  E   ++  ++      ++  
Sbjct: 269 AYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVT 328

Query: 136 LLN--------------------------------------KCGKLKEVCQLFDKLPNRD 157
           L+N                                      +CG  +E   LF ++P  +
Sbjct: 329 LVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-N 387

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISART----KLRDLEMGK 213
            +SWNTMI+  +  G  +  + L  +M  EG++P   T ++L+ A      + R +  G+
Sbjct: 388 AVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGR 447

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI-DEVDVVLWTTLVSGYV 272
            LH  +         ++   +V MY  CG I EA     R  + D  DVV W  ++S   
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLS 507

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
           +      A   F  M    +    +    +L+        +CA   AL  G  VH +++ 
Sbjct: 508 QHGHGKRALGFFRRMDLHGVAPNQITCVAVLD--------ACAGAAALTEGEIVHDHLRH 559

Query: 333 NQISID---------------NIELAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAID 376
           + +  +               ++E A ++F +++ E++V ++ ++IAAY+  G A +A+ 
Sbjct: 560 SGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALK 619

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF  M++ G++PD+ +F+++LSACSHGGL DEG++      + Y I P   HY C VD+L
Sbjct: 620 LFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVL 679

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG L ++   I  M + P V +W +LL ACR +++V     A   + E DP ++ A+V
Sbjct: 680 GRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYV 739

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           +L+NI A AG+ D+ + +R ++   GL+K+ G S IE    VH+F +GD  +P SEEIY 
Sbjct: 740 VLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYR 799

Query: 557 MLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTSEKTTIRIVN 600
            L  +   +++ G + +T L               QH ERLA+A G++S+S   T+R++ 
Sbjct: 800 ELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSS-TDTVRVMK 858

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCH+  K  S++ N+EIV+RD  RFH F  G CSC DYW
Sbjct: 859 NLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 160/360 (44%), Gaps = 33/360 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  L +V ++F +L  RD  SW T+I+ YT  G  +  +G+  +M  EGV  D VT ++
Sbjct: 74  KCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLA 133

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +L DL  G+++H ++ ES +K    L N L+ +Y  CG +  A  L   +E  E
Sbjct: 134 VLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLL---FEKME 190

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM------VERNLISWTLMISGMLNQDAEFKYK 312
            D+V W   ++   +S +   A  LF  M        R  +   L +   + Q     + 
Sbjct: 191 RDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFI 250

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
              S   L   + V   +      + ++  A ++F   +E++V  W +++ AYA  GH  
Sbjct: 251 VRES--GLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMS 308

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACS--------HGGLVDEGYDFLSKKSRVYNIKP 424
           +A  LF  M   G  P +VT +   + CS        HG  +++G D    +  V     
Sbjct: 309 EAALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLD----RDIVLG--- 361

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
                  ++D+  R G  EE+ +      IP +   W++++        +K A   F+ +
Sbjct: 362 -----NALLDMYTRCGSPEEARHLFKR--IPCNAVSWNTMIAGSSQKGQMKRAVELFQRM 414



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 135/304 (44%), Gaps = 33/304 (10%)

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V L+ A    R L  G+ +H  +   ++ +   L N+L+ +Y KC  +G+ +++  R E
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARI--VSLGLEEELGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D   WTT+++ Y +  +   A  +F  M +  +    +    +L        K+CA
Sbjct: 90  VR--DEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVL--------KACA 139

Query: 316 SIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTS 360
            +G L  G  +H +I ++ +               S   +  A  LF ++ E+++  W +
Sbjct: 140 RLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNA 198

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
            IAA A +G    A++LF  M+  G +P ++T +  L+ C+      +   F+ ++S   
Sbjct: 199 AIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQA-QAIHFIVRES--- 254

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            ++  +     +     R GHL + A  +       DV  W+++L A   H ++  A   
Sbjct: 255 GLEQTLVVSTALASAYARLGHLYQ-AKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 481 FKHL 484
           F  +
Sbjct: 314 FARM 317


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 291/546 (53%), Gaps = 49/546 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEV 194
           + +KCG L E C++FD++P +D ++W  MI  Y   G     +     M  EG V  D+ 
Sbjct: 315 MYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQH 374

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
              S++SA   L+D  + K++H  + ++  ++  ++ N L+DMY K   +  A ++L + 
Sbjct: 375 VFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVL-KI 433

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFK 310
           +    +VV  T+++ GY++++  +EA  ++ E+    VE N  +++ MI G         
Sbjct: 434 DPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG--------- 484

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNV 355
              CA    L  G  +H  + K  +  D+               I L+  LF+EI  +  
Sbjct: 485 ---CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 541

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W +VI  +A  GH ++AI  F  M  +G +P+ + F++LL+ACSH GLVDEG  +   
Sbjct: 542 IAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYS 601

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
               + I+PK +HY C++D  GRAG L+E+  FI+ MPI P+   W SLL ACR   + +
Sbjct: 602 MKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKE 661

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           L E A ++L + +P N G HV L+ IYA  G+ +D+  +R  +RD  +KK  G+S ++  
Sbjct: 662 LGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSN 721

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRE 579
              H F S D  +P  ++IY  L E+   ++++G + +TS                 H E
Sbjct: 722 KKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSE 781

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           R+AVAF LIS      I +  NLRIC DCH+  K   +V  R+I++RDN RFH F  G+C
Sbjct: 782 RIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRC 841

Query: 640 SCRDYW 645
           SC DYW
Sbjct: 842 SCGDYW 847



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 168/400 (42%), Gaps = 43/400 (10%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
            + + C  L    +LF  +P R+ +SW T++S  +   M+ + L   + M   GV+P   
Sbjct: 214 TMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRF 273

Query: 195 ----------TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
                      + + + AR+      +G +  LF+  +           L DMY KCG +
Sbjct: 274 ALSSAARAAAALGAPLRARSCTASASVGFDTELFVASN-----------LADMYSKCGLL 322

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW-------TL 297
            EA ++    ++ + D V WT ++ GY K+   + A   F +M    L+          L
Sbjct: 323 SEACRVFD--QMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVL 380

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI-----SIDNIELAYDLFSEISE 352
             SG L      K   C    A   G  + V ++   I     S+D    +  L  +   
Sbjct: 381 SASGGLKDGWLSKSIHCCVTKA---GFELEVAVRNALIDMYAKSMDVESASRVLKIDPGG 437

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
            NV   TS+I  Y      ++A+ +++E+   G +P++ TF +++  C+   L+++G   
Sbjct: 438 WNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQL 497

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
            ++  +   I+        +VD+ G+ G +  S      +    D++ W++++     H 
Sbjct: 498 HAQVIKTDLIRDSFVG-STLVDMYGKCGLISLSMQLFNEIEYRTDIA-WNAVINVFAQHG 555

Query: 473 NVKLAEHAFKHLTETD--PLNDGAHVLLANIYAKAGRLDD 510
           + + A  AF  +  +   P N  A V L    + AG +D+
Sbjct: 556 HGREAIQAFDRMIYSGIRP-NHIAFVSLLTACSHAGLVDE 594



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 127/332 (38%), Gaps = 66/332 (19%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE- 193
            + + C  L    +LF  +P R+ +SW T++S  +   M+ + L   + M   GV+P   
Sbjct: 64  TMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRL 123

Query: 194 -----------------------------------------------VTMVSLISARTKL 206
                                                          V + SL+ +  + 
Sbjct: 124 IYETKFHNTLGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRA 183

Query: 207 RDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
            DL  G+ LH  L  S    + + L N+L+ MY  C  +  A +L     +   + V WT
Sbjct: 184 GDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA--AMPRRNAVSWT 241

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWT-----LMISGMLNQDAEFKYKSCASIGAL 320
           TLVSG +  N            + R  ++ T               A  + +SC +  ++
Sbjct: 242 TLVSG-LSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASV 300

Query: 321 YHGIWVHVYIKKNQISIDN----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
             G    +++  N   + +    +  A  +F ++ +K+   WT++I  YA  G  + A+ 
Sbjct: 301 --GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVL 358

Query: 377 LFLEMEETG-TKPDQVTFIALLSACSHGGLVD 407
            F +M+  G    DQ  F ++LSA   GGL D
Sbjct: 359 SFRDMKREGLVGADQHVFCSVLSA--SGGLKD 388



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLG 252
           V + SL+ +  +  DL  G+ LH  L  S    + + L N+L+ MY  C  +  A +L  
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFA 80

Query: 253 RYEIDEVDVVLWTTLVSG 270
              +   + V WTTLVSG
Sbjct: 81  --AMPRRNAVSWTTLVSG 96


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 180/553 (32%), Positives = 299/553 (54%), Gaps = 58/553 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +LF    N +V  + ++I  + S G Y + + L  +M  + V  D   + +++ A    R
Sbjct: 80  KLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQR 139

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L  GK +H  + +S + +  S+   LV++Y KCG + +A+K+     + E DVV  T +
Sbjct: 140 ALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFD--GMPERDVVACTVM 197

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK----------------- 310
           +         +EA  +F+EM  R+ + WT++I G++ ++ EF                  
Sbjct: 198 IGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLV-RNGEFNRGLEVFREMQVKGVEPN 256

Query: 311 -------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                    +CA +GAL  G W+H Y++K  + ++               +I+ A  LF 
Sbjct: 257 EVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFD 316

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            +  K+V  + S+I   A+ G + +A++LF EM +   +P+ +TF+ +L+ACSHGGLVD 
Sbjct: 317 GVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDL 376

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G +       ++ I+P+++HYGCMVD+LGR G LEE+ +FI  M +  D  +  SLL AC
Sbjct: 377 GGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSAC 436

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           + H+N+ + E   K L+E   ++ G+ ++L+N YA  GR    + +R K+   G+ K+ G
Sbjct: 437 KIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPG 496

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---LQETSLQ--------- 576
            S IE    +H+F SGD+ +P  + IY  L E+    + +G     E +L          
Sbjct: 497 CSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKEL 556

Query: 577 ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
               H ERLA+ +GL+ST   TT+R+  NLRIC DCH+ +K+ +++  R+IV+RD  RFH
Sbjct: 557 ALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFH 616

Query: 633 RFQGGQCSCRDYW 645
            F+ G+CSC+DYW
Sbjct: 617 HFENGECSCKDYW 629



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 19/223 (8%)

Query: 71  RDPQISTQVFEFLVFTGDLGYAQQIIRQ----GDEPEIKIWNSIIENQLINGYPQEVFAI 126
           RD    T V + LV  G+     ++ R+    G EP    +  ++      G  +    I
Sbjct: 220 RDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWI 279

Query: 127 YLYL------VTRTV------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
           + Y+      V R V      + ++CG + E   LFD +  +DV ++N+MI      G  
Sbjct: 280 HAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKS 339

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY- 233
            E + L S+M  E V P+ +T V +++A +    +++G  +   + E    I   + +Y 
Sbjct: 340 IEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESM-EMIHGIEPEVEHYG 398

Query: 234 -LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
            +VD+  + G++ EA   +GR  ++  D +L + L +  +  N
Sbjct: 399 CMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKN 441


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 302/546 (55%), Gaps = 40/546 (7%)

Query: 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           ++LY V+ ++L  +         LFDK+P +++  WN +I  Y   G +   + L  KM 
Sbjct: 89  VHLYAVSNSLLNAR--------NLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKML 140

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
             G+ PD  T+  ++ A + L  +  G+++H ++ +S  +    +   L+DMY KCG + 
Sbjct: 141 DYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVM 200

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
           +A ++  +  +   D VLW ++++ Y ++   DE+  L  EM    +      +  +++ 
Sbjct: 201 DAGRVFDKIVVR--DAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISS 258

Query: 306 DAEFKYKSCASIGALYHGI-WVHVYIKKNQIS---ID------NIELAYDLFSEISEKNV 355
            A+    +C   G   HG  W H +   +++    ID      ++++A  LF  + EK V
Sbjct: 259 SADV---ACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRV 315

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W ++I  YAM G A  A+DLF +M +   +PD +TF+ +L+ACS G L+DEG    + 
Sbjct: 316 VSWNAIITGYAMHGLAVGALDLFDKMRKE-DRPDHITFVGVLAACSRGRLLDEGRALYNL 374

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
             R Y I P +QHY CM+DLLG  G L+E+ + I +M + PD  +W +LL +C+ H NV+
Sbjct: 375 MVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVE 434

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           LAE A + L E +P + G +V+LAN+YA++G+ + + ++R  + D  +KK +  S IE  
Sbjct: 435 LAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVK 494

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------QETSL--QHRE 579
             V+ F +GD+ + +S+ IY  L  +E  + + G               ++TS+   H E
Sbjct: 495 NKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSE 554

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           RLA+AFGLISTS  T + I  NLRIC DCH  +K  S++  REI +RD  R+H F+ G C
Sbjct: 555 RLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMC 614

Query: 640 SCRDYW 645
           SC D+W
Sbjct: 615 SCGDHW 620



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 126/306 (41%), Gaps = 53/306 (17%)

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------ML--- 303
           L T LV  Y  SN    AR LFD++ ++NL  W ++I G                ML   
Sbjct: 84  LATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYG 143

Query: 304 ----NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAY 344
               N    F  K+C+++ A+  G  +H Y+ K+    D                +  A 
Sbjct: 144 LRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAG 203

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F +I  ++  LW S++AAYA  GH  ++I L  EM   G +P + T + ++S+ +   
Sbjct: 204 RVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVA 263

Query: 405 LVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
            +  G   + F  +     N K K      ++D+  + G ++ +      +     VS W
Sbjct: 264 CLPYGREIHGFGWRHGFQSNDKVKT----ALIDMYAKCGSVKVALALFERLREKRVVS-W 318

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA--GRLDDMSRI--RMK 517
           ++++     H     A   F  + + D  +   H+    + A    GRL D  R    + 
Sbjct: 319 NAIITGYAMHGLAVGALDLFDKMRKEDRPD---HITFVGVLAACSRGRLLDEGRALYNLM 375

Query: 518 LRDMGL 523
           +RD G+
Sbjct: 376 VRDYGI 381


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 187/595 (31%), Positives = 308/595 (51%), Gaps = 86/595 (14%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
           W++I  N L+ GY Q                    +++E  ++F+K+P RDV+SWNTM+S
Sbjct: 260 WDAISWNALMAGYVQR------------------SQIEEAQKMFNKMPQRDVVSWNTMVS 301

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSP--DEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
            Y   G   E   L        V+P  D  T  +++S   +   LE  K +   + +   
Sbjct: 302 GYARRGDMAEARRLFD------VAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK-- 353

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
             +    N ++  Y +   + EA++L         +V  W T+++GY ++   DEAR +F
Sbjct: 354 --NAVSWNAMMAAYVQRRMMEEAKELFDAMPCR--NVASWNTMLTGYAQAGMLDEARAIF 409

Query: 285 DEMVERNLISWTLMISGM---------------LNQDAEFKYKS--------CASIGALY 321
             M +++ +SW  M++                 + +  E+  +S        CA I AL 
Sbjct: 410 GMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALE 469

Query: 322 HGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
            G+ +H  + K    +                ++E A+  F E+ E++V  W ++IA YA
Sbjct: 470 CGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYA 529

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++A+++F  M +T TKPD +T + +L+ACSH GLV++G  +     R + +  K 
Sbjct: 530 RHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKP 589

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HY CM+DLLGRAG L+E+ N +  MP  PD ++W +LL A R H+N +L  +A + + E
Sbjct: 590 EHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFE 649

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            +P N G +VLL+NIYA +G+  D+ ++R  + + G+KK  G+S IE    VH F+ GD 
Sbjct: 650 LEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDS 709

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLIST 590
            +P  E+IY  L ++++ +++ G                +E  L+ H E+LAVA+G++  
Sbjct: 710 VHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKI 769

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
                IR++ NLR+C DCH+  K  S +  R I++RD+ RFH F+ G CSC DYW
Sbjct: 770 PPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 151/324 (46%), Gaps = 31/324 (9%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYL-----VTRTVLLNKCG---KLKEVCQLFDKLPNRDV 158
           +N+++     NG   +  + +  +      +   LL+  G    L +V  LFD++P +D 
Sbjct: 141 YNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDS 200

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           +S+N MIS + + G+    + L           D V+   +++A  +   ++  + L   
Sbjct: 201 VSYNVMISSHANHGL----VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF-- 254

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
             +S  +      N L+  Y +  +I EAQK+  +  + + DVV W T+VSGY +  +  
Sbjct: 255 --DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNK--MPQRDVVSWNTMVSGYARRGDMA 310

Query: 279 EARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
           EARRLFD    R++ +WT ++SG       ++A+  + +     A+     +  Y+++  
Sbjct: 311 EARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRM 370

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                +E A +LF  +  +NV  W +++  YA AG   +A  +F  M +     D V++ 
Sbjct: 371 -----MEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQK----DAVSWA 421

Query: 395 ALLSACSHGGLVDEGYDFLSKKSR 418
           A+L+A S  G  +E      +  R
Sbjct: 422 AMLAAYSQIGFSEETLQLFKEMGR 445


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 190/548 (34%), Positives = 298/548 (54%), Gaps = 33/548 (6%)

Query: 125 AIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
           A  L L T+ V   + C  L+    LFDK+P  ++  WN +I  Y   G +   + L  +
Sbjct: 90  AYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQ 149

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M   G+ PD  T+  ++ A + L  +  G+ +H  +  S  +    +   LVDMY KCG 
Sbjct: 150 MLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGC 209

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           + +A+ +  +  I + D VLW ++++ Y ++   DE+  L  EM  + +      +  ++
Sbjct: 210 VVDARHVFDK--IVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVI 267

Query: 304 NQDAEFKYKSCASIGALYHGI-WVHVYIKKNQIS---ID------NIELAYDLFSEISEK 353
           +  A+    +C   G   HG  W H +   +++    ID      ++++A  LF  + EK
Sbjct: 268 SSSADI---ACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREK 324

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
            V  W ++I  YAM G A +A+DLF  M +   +PD +TF+  L+ACS G L+DEG    
Sbjct: 325 RVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALY 383

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           +   R   I P ++HY CMVDLLG  G L+E+ + I  M + PD  +W +LL +C+ H N
Sbjct: 384 NLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGN 443

Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
           V+LAE A + L E +P + G +V+LAN+YA++G+ + ++R+R  + D G+KK +  S IE
Sbjct: 444 VELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIE 503

Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------QETSL--QH 577
               V+ F SGD+ +P+S  IY  L  +E  +++ G               ++T +   H
Sbjct: 504 VKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSH 563

Query: 578 RERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            ERLA+AFGLIST   T + I  NLRIC DCH  +K  S++  REI +RD  R+H F+ G
Sbjct: 564 SERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHG 623

Query: 638 QCSCRDYW 645
            CSC DYW
Sbjct: 624 LCSCGDYW 631



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 114/265 (43%), Gaps = 32/265 (12%)

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            SL+ +    + LE GK LH  L +  +  +  L   LV+ Y  C  +  A  L  +  I
Sbjct: 62  ASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDK--I 119

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + ++ LW  L+  Y  +   + A  L+ +M+E  L      +         F  K+C++
Sbjct: 120 PKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLP--------FVLKACSA 171

Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
           +  +  G  +H  + ++    D                +  A  +F +I +++  LW S+
Sbjct: 172 LSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSM 231

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSR 418
           +AAYA  GH  +++ L  EM   G +P + T + ++S+ +    +  G   + F  +   
Sbjct: 232 LAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGF 291

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLE 443
            YN K K      ++D+  + G ++
Sbjct: 292 QYNDKVKTA----LIDMYAKCGSVK 312


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 288/542 (53%), Gaps = 51/542 (9%)

Query: 129 YLVTRTVLLNKCGK-LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           Y+V   + L   GK L    QLF    +RDV+SWN MI  Y   G       +  +M   
Sbjct: 36  YIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM--- 92

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
            V  D ++  ++I+    +  ++  K L   + E  +    S+L+  V    KCG + EA
Sbjct: 93  -VCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFV----KCGNVEEA 147

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
             L    E+   DVV W ++++ Y +  + +EA  LFD+M    +      +  +L+   
Sbjct: 148 FGLFS--EMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLS--- 202

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISE 352
                +CA +GAL  G+ +H YI  N+I +++I                LA  +F+ +  
Sbjct: 203 -----ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 257

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           K+V  W ++IA  A+ GH ++A  LF EM+E   +P+ +TF+A+LSACSH G+VDEG   
Sbjct: 258 KDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKL 317

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
           L   S  Y I+PK++HY C++DLL RAG LEE+   I +MP+ P+ S   +LL  CR H 
Sbjct: 318 LDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHG 377

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N +L E   K L    P + G ++LL+NIYA A + DD  ++R  ++  G+ K  G S+I
Sbjct: 378 NFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 437

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIE-----------------MTLQQQGLQETSL 575
           E  G VH+F +GD  +P S +IY  LNEI                  + ++++  +    
Sbjct: 438 ELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALA 497

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LA+A+GL+    K  IRIV NLR+C DCH   K+ S+VY REI++RD  RFH F+
Sbjct: 498 VHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFE 557

Query: 636 GG 637
            G
Sbjct: 558 DG 559



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 35/178 (19%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQ 78
           L L  +MR       V P    V+ +  +C+   ++D+   +H+++    +  +  + T 
Sbjct: 179 LALFDQMRA----VGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA 234

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN 138
           + +     G +  A Q+    +  ++  WN+II    I+G+                   
Sbjct: 235 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGH------------------- 275

Query: 139 KCGKLKEVCQLFDKLPNRDV----ISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSP 191
               +KE  QLF ++    V    I++  M+S  +  GM  EG  LL  M +  G+ P
Sbjct: 276 ----VKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 329



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 30/177 (16%)

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
           F  K+C      + G+ VH ++ K+    D               ++  A  LFS  S++
Sbjct: 5   FVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDR 64

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           +V  W ++I  Y   G       +F  M       D +++  +++  +  G +DE     
Sbjct: 65  DVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEA---- 116

Query: 414 SKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
               R+++  P+  +  +  M+    + G++EE+    + MP   DV  W+S+L AC
Sbjct: 117 ---KRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPC-RDVVSWNSML-AC 168


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 207/699 (29%), Positives = 340/699 (48%), Gaps = 96/699 (13%)

Query: 26  PKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF 85
           P  R+S       P++     + R    +   ++IH+ +IT+ L  +  +S  +    V+
Sbjct: 16  PTQRLS-------PLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVY 68

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY------------------ 127
            G L  A+QI        +  W  +I     N    E   ++                  
Sbjct: 69  CGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSV 128

Query: 128 --------LYLVTRTV---------------------LLNKCGKLKEVCQLFDKLPNRDV 158
                   L  + ++V                     + +K G +    QLF+ +  R+V
Sbjct: 129 LPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNV 188

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           ++WN ++S Y+  G   E + L + M  +G+  D  T++SLI A   +  L++G  +H F
Sbjct: 189 VTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           +  +  +    +   L+D+Y     + +A ++    E+   DV  WT +++G+      D
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS--EMSVKDVAAWTLMLTGFSSGRHWD 306

Query: 279 EARRLFDEMVE-RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----N 333
            A + F++M+  +NL   ++ + G+L+        SC+  GAL  G  VH    K    N
Sbjct: 307 RAIKHFNKMLGIQNLKLDSIALMGILS--------SCSHSGALQQGRRVHALAIKTCFAN 358

Query: 334 QISID-----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
            I +            N+E A   F  + EK+V  W ++IA   M G+   AIDLFL+M+
Sbjct: 359 NIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMK 418

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
            +G  PD+ TF+++L ACSH G+V EG        +  ++ P +QHY C++D+LGRAG L
Sbjct: 419 GSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQL 478

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           + + +FI +MP  PD  ++S+LL ACR H N+KL     + + E +P + G +VLL+N+Y
Sbjct: 479 DAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMY 538

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE 562
           A AG  + +   R  LR   +KK  G+S IE    ++ F +G+  +P   +I  +L  + 
Sbjct: 539 ALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLI 598

Query: 563 MTLQQQG--------LQETS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICG 606
           + +++ G        LQ+ S          H E++A+AFGL+ T  +T IRI  NLR C 
Sbjct: 599 LKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCD 658

Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           DCH+  K  S+V+ R +VI+D  RFH FQ G CSCRDYW
Sbjct: 659 DCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 189/618 (30%), Positives = 325/618 (52%), Gaps = 64/618 (10%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++H H++         + + + +    TG +  A+Q   +  E  + ++N++I       
Sbjct: 163 QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAG----- 217

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                             L +C ++++  QLF  +  +D ISW  MI+ +T  G+ RE +
Sbjct: 218 ------------------LMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAI 259

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
            L  +M  E +  D+ T  S+++A   +  L+ GK +H ++  +  + +  + + LVDMY
Sbjct: 260 DLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMY 319

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KC  I  A+ +  +  ++  +VV WT ++ GY ++   +EA ++F +M    +      
Sbjct: 320 CKCKSIKSAETVFRK--MNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFT 377

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELA 343
           +  +++        SCA++ +L  G   H           + +    +++     +IE +
Sbjct: 378 LGSVIS--------SCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDS 429

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
           + LFSE+S  +   WT++++ YA  G A + + LF  M   G KPD+VTFI +LSACS  
Sbjct: 430 HRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRA 489

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GLV +G        + + I P   HY CM+DL  RAG LEE+  FI  MP  PD   W+S
Sbjct: 490 GLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWAS 549

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL +CR H+N+++ + A + L + +P N  +++LL++IYA  G+ ++++ +R  +RD GL
Sbjct: 550 LLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGL 609

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------- 570
           +K+ G S I+    VH F++ D  NP S++IY  L ++   + Q+G              
Sbjct: 610 RKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDD 669

Query: 571 -QETSL--QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
            ++  +   H E+LA+AFGLI       IR+V NLR+CGDCH+  K  S++  REI++RD
Sbjct: 670 SEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRD 729

Query: 628 NGRFHRFQGGQCSCRDYW 645
             RFH F+ G+CSC D+W
Sbjct: 730 AARFHLFKDGRCSCGDFW 747



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/479 (22%), Positives = 228/479 (47%), Gaps = 76/479 (15%)

Query: 58  ERIHSHLITTNLMRDPQI---STQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQ 114
           ++IH H+I     R+P+I   +  V  +  F   + YA+++  Q  +  +  WN+++ + 
Sbjct: 29  KKIHCHIIKA--FRNPEIFLLNNLVSAYAKFD-RITYARRVFDQMPQRNLYSWNTLLSS- 84

Query: 115 LINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
                                  +K   L E+ ++F  +P RD++SWN++IS Y   G  
Sbjct: 85  ----------------------YSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFL 122

Query: 175 REGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY 233
            + +   + M   G  + + + + +++   +K   + +G  +H  + +   +    + + 
Sbjct: 123 LQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSP 182

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           LVDMY K G +  A++     E+ E +VV++ TL++G ++ +  +++R+LF +M E++ I
Sbjct: 183 LVDMYSKTGLVFCARQAFD--EMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSI 240

Query: 294 SWTLMISGM----LNQDA---------------EFKYKS----CASIGALYHGIWVHVYI 330
           SWT MI+G     L+++A               ++ + S    C  + AL  G  VH YI
Sbjct: 241 SWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYI 300

Query: 331 KKNQ---------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            +                     +I+ A  +F +++ KNV  WT+++  Y   G++++A+
Sbjct: 301 IRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAV 360

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
            +F +M+  G +PD  T  +++S+C++   ++EG  F   ++ V  +   +     +V L
Sbjct: 361 KIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHC-RALVSGLISFITVSNALVTL 419

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRA----CRCHQNVKLAEHAFKHLTETDPL 490
            G+ G +E+S    + M    +VS W++L+       + ++ ++L E    H  + D +
Sbjct: 420 YGKCGSIEDSHRLFSEMSYVDEVS-WTALVSGYAQFGKANETLRLFESMLAHGFKPDKV 477


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 185/549 (33%), Positives = 298/549 (54%), Gaps = 47/549 (8%)

Query: 130 LVTRTVLLNKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           L    V L KC ++ +   LF  +   + V+SW  MIS Y   G   + + L S M  EG
Sbjct: 342 LTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREG 401

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           V P+  T  ++++ +  +   E    +H  + ++  + S S+   L+D + K G I +A 
Sbjct: 402 VKPNHFTYSTILTVQHAVFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAV 457

Query: 249 KLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           K+   +E+ E  DV+ W+ +++GY ++ E +EA ++F ++    +         ++N   
Sbjct: 458 KV---FELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIIN--- 511

Query: 308 EFKYKSCASIGALYHGIWVHVYIKK----NQISID-----------NIELAYDLFSEISE 352
                  A   ++  G   H Y  K    N + +            NIE A+++F    E
Sbjct: 512 ----ACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKE 567

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           +++  W S+I+ YA  G A+KA+++F EM++   + D +TFI ++SAC+H GLV +G ++
Sbjct: 568 RDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNY 627

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
            +     ++I P M+HY CM+DL  RAG L ++ + I  MP PP  ++W  +L A R H+
Sbjct: 628 FNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHR 687

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N++L + A + +   +P +  A+VLL+NIYA AG   +   +R  +    +KK+ GYS I
Sbjct: 688 NIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWI 747

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ---------------ETSL-Q 576
           E     + F +GD+ +P S+ IY  L+E+   L+  G Q               ET L  
Sbjct: 748 EVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSH 807

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H ERLA+AFGLI+T  +  ++IV NLR+CGDCHSF+K+ S V  R IV+RD+ RFH F+G
Sbjct: 808 HSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKG 867

Query: 637 GQCSCRDYW 645
           G CSC DYW
Sbjct: 868 GLCSCGDYW 876



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 181/370 (48%), Gaps = 33/370 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +L+K G L++   +FD + N+D +SWN+MI+ +   G   E     + M   G  P   T
Sbjct: 247 MLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHAT 306

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S+I +   L++L + + LH    +S +  + ++L  L+    KC +I +A  L     
Sbjct: 307 FASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMH 366

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFD----EMVERNLISWT--------LMISGML 303
             +  VV WT ++SGY+++ + D+A  LF     E V+ N  +++        + IS + 
Sbjct: 367 GVQ-SVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIH 425

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA 363
            +  +  Y+  +S+G       +  ++K     I NI  A  +F  I  K+V  W++++A
Sbjct: 426 AEVIKTNYEKSSSVGTAL----LDAFVK-----IGNISDAVKVFELIETKDVIAWSAMLA 476

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH-GGLVDEGYDFLSKKSRVYNI 422
            YA AG  ++A  +F ++   G KP++ TF ++++AC+     V++G  F       Y I
Sbjct: 477 GYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQF-----HAYAI 531

Query: 423 KPKMQHYGC----MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
           K ++ +  C    +V L  + G++ ESA+ I       D+  W+S++     H   K A 
Sbjct: 532 KLRLNNALCVSSSLVTLYAKRGNI-ESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKAL 590

Query: 479 HAFKHLTETD 488
             F+ + + +
Sbjct: 591 EVFEEMQKRN 600



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 183/438 (41%), Gaps = 65/438 (14%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  K G +++  ++FD++ +RDV+SWN++++ Y+      +   L   M  EG  PD  T
Sbjct: 146 MYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYT 205

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + ++I+A      + +G  +H  + +   +    + N L+ M  K G + +A+ +    E
Sbjct: 206 VSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNME 265

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKS 313
               D V W ++++G+V + +  EA   F+ M           ++G     A F    KS
Sbjct: 266 --NKDSVSWNSMIAGHVINGQDLEAFETFNNM----------QLAGAKPTHATFASVIKS 313

Query: 314 CASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEI-SEKNVYL 357
           CAS+  L     +H    K+ +S +                I+ A+ LFS +   ++V  
Sbjct: 314 CASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVS 373

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE--------- 408
           WT++I+ Y   G   +A++LF  M   G KP+  T+  +L+   H   + E         
Sbjct: 374 WTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVFISEIHAEVIKTN 432

Query: 409 -------GYDFLSKKSRVYNIKPKMQ-----------HYGCMVDLLGRAGHLEESANF-- 448
                  G   L    ++ NI   ++            +  M+    +AG  EE+A    
Sbjct: 433 YEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFH 492

Query: 449 -ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV--LLANIYAKA 505
            +T   I P+   + S++ AC            F        LN+   V   L  +YAK 
Sbjct: 493 QLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKR 552

Query: 506 GRLDDMSRI--RMKLRDM 521
           G ++    I  R K RD+
Sbjct: 553 GNIESAHEIFKRQKERDL 570



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 133/286 (46%), Gaps = 25/286 (8%)

Query: 130 LVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           L  RT+L +   +  +  QLFD+ P RD+   N ++  Y+     +E L L   +   G+
Sbjct: 41  LNARTLLRDSDPRFAQ--QLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGL 98

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
           SPD  TM  ++S      +  +G+ +H    +  +    S+ N LVDMY K G + + ++
Sbjct: 99  SPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRR 158

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF----DEMVERNLISWTLMISGMLNQ 305
           +    E+ + DVV W +L++GY  +   D+   LF     E    +  + + +I+ + NQ
Sbjct: 159 VFD--EMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQ 216

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN----------IELAYDLFSEISEKNV 355
            A        +IG   H + V +  +  ++  ++          +  A  +F  +  K+ 
Sbjct: 217 GA-------VAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDS 269

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
             W S+IA + + G   +A + F  M+  G KP   TF +++ +C+
Sbjct: 270 VSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCA 315



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 23/209 (11%)

Query: 271 YVKSNERDEARRLFDEMVERNLI--SWTL-----MISGMLNQD-AEFKYKSCASIGALYH 322
           Y + ++  EA  LF  +    L   S+T+     + +G  N    E  +  C   G ++H
Sbjct: 77  YSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHH 136

Query: 323 ----GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
                  V +Y K       N+     +F E+ +++V  W S++  Y+      +  +LF
Sbjct: 137 LSVGNSLVDMYTKTG-----NVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELF 191

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC--MVDLL 436
             M+  G +PD  T   +++A ++ G V  G   +   + V  +  + +   C  ++ +L
Sbjct: 192 CLMQVEGYRPDYYTVSTVIAALANQGAVAIG---MQIHALVVKLGFETERLVCNSLISML 248

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++G L ++     +M     VS W+S++
Sbjct: 249 SKSGMLRDARVVFDNMENKDSVS-WNSMI 276


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 287/554 (51%), Gaps = 42/554 (7%)

Query: 124 FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
           F    Y++T  + L +KCG +     LF ++   D+I++N MIS +T+ G     + L  
Sbjct: 240 FGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFR 299

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           ++   G      T+V LI   +    L +  ++H F  +S + ++ ++      +Y K  
Sbjct: 300 ELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLN 359

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
           +I  A+ L    E  E  VV W  ++SGY ++   + A  LF EM++       + I+ +
Sbjct: 360 EIDLARHLFD--ESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTI 417

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLF 347
           L+        +CA +G+L  G WVH  IK   +  +               NI  A+ LF
Sbjct: 418 LS--------ACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLF 469

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             +SEKN   W ++I  Y + G+  +A+ L+ EM   G  P  VTF+++L ACSH GLV 
Sbjct: 470 DSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVG 529

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG +        Y I+P ++HY CMVD+LGR+G LE++  FI  MP+ P  ++W +LL A
Sbjct: 530 EGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGA 589

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           C  H++  +A  A + L E DP + G +VLL+NIY+        + IR  ++   L K  
Sbjct: 590 CMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSP 649

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------- 576
           G +LIE  G  H F SGD  + H+ +IY  L ++   +++ G Q  ++            
Sbjct: 650 GCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKE 709

Query: 577 -----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
                H E+LA+AFGLI+T     IRI+ NLR+C DCH+  K  S++  R IV+RD  RF
Sbjct: 710 LAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRF 769

Query: 632 HRFQGGQCSCRDYW 645
           H F+ G CSC DYW
Sbjct: 770 HHFKDGICSCGDYW 783



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 177/363 (48%), Gaps = 21/363 (5%)

Query: 113 NQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYT 169
           + +I+GY   VF         + L++   K   V    ++FD +P RD + WNTMI+   
Sbjct: 133 HSIIDGYGSNVF-------VGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLV 185

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
               + + + L  +M A+GV  D  T+ +++ A  +L++L++G  +     +        
Sbjct: 186 KNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDY 245

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           +L  L+ +Y KCG +  A+ L  R  I+  D++ +  ++SG+  +   + + +LF E++ 
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRR--INRPDLIAYNAMISGFTANGGTECSVKLFRELLF 303

Query: 290 RNLISWTLMISGMLNQDAEFK--YKSCASIG-ALYHGIWVHVYIKKNQISIDN----IEL 342
                 +  I G++   + F   + +C+  G  +  GI ++  +     +I N    I+L
Sbjct: 304 SGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDL 363

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  LF E  EK V  W ++I+ Y   G  + AI LF EM +T   P+ VT   +LSAC+ 
Sbjct: 364 ARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQ 423

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            G +  G  ++    +  N++P +     +VD+  + G++ E+     SM     V+ W+
Sbjct: 424 LGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVT-WN 481

Query: 463 SLL 465
           +++
Sbjct: 482 TMI 484


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/563 (31%), Positives = 310/563 (55%), Gaps = 62/563 (11%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS---KMGAEGVS---PDEVTM 196
           L +  ++F+++P RDV+SWN++IS Y + G + E L +     K+  E V+   PD +T+
Sbjct: 166 LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTI 225

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            S++ A   L DLE GK +H ++  S  +   +  N L++MY KCG +  +Q++    + 
Sbjct: 226 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 285

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW-TLMISGMLNQDAEFKYK--- 312
              D V W ++++ Y+++ +  ++ ++F+ M  R++I+W T++ S + ++D     +   
Sbjct: 286 K--DSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 343

Query: 313 -------------------SCASIGALYHGIWVHVYIKK----NQISIDNIEL------- 342
                               C+ + A   G  +H  I K    + + + N+ +       
Sbjct: 344 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 403

Query: 343 ----AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
               ++ +F  +  K+V  WT++I+A  M G  +KA+  F EME  G  PD V F+A++ 
Sbjct: 404 SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIF 463

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACSH GLV+EG ++  +  + Y I+P+++HY C+VDLL R+  L+++ +FI SMP+ PD 
Sbjct: 464 ACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDS 523

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
           SIW +LL ACR   + ++AE   + + E +P + G +VL++NIYA  G+ D +  IR  +
Sbjct: 524 SIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSI 583

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------- 570
           +  GLKK  G S +E    V+ F +G  F    EE+  +L  +   + ++G         
Sbjct: 584 KARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVL 643

Query: 571 --------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                   ++    H ERLA+AFGL++T   T ++++ NLR+C DCH+  K  S++  RE
Sbjct: 644 HDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRE 703

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           +++RD  RFH F+ G CSC DYW
Sbjct: 704 LLVRDANRFHVFKDGACSCGDYW 726



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 157/370 (42%), Gaps = 56/370 (15%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  L +  + ++C  + + E    +H ++IT+    D   S  +       G+L  +Q++
Sbjct: 220 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 279

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
                   +K  +S+  N +IN Y Q                   GK+ +  ++F+ +  
Sbjct: 280 FSG-----MKCKDSVSWNSMINVYIQN------------------GKMGDSLKVFENMKA 316

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RD+I+WNT+I+          GL ++S+M  EGV+PD  TM+S++   + L     GK +
Sbjct: 317 RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEI 376

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           H  + +  ++    + N L++MY KCG +  + ++    +    DVV WT L+S      
Sbjct: 377 HGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK--DVVTWTALISACGMYG 434

Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI-WVHVYIKKNQ 334
           E  +A R F EM    ++   +    ++         +C+  G +  G+ + H   K  +
Sbjct: 435 EGKKAVRAFGEMEAAGIVPDHVAFVAIIF--------ACSHSGLVEEGLNYFHRMKKDYK 486

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           I                E  +  +  V+   + +    KA D  L M     KPD   + 
Sbjct: 487 I----------------EPRIEHYACVVDLLSRSALLDKAEDFILSMP---LKPDSSIWG 527

Query: 395 ALLSACSHGG 404
           ALLSAC   G
Sbjct: 528 ALLSACRMSG 537



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 171/408 (41%), Gaps = 77/408 (18%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P+ +V  WN++I   T  G++ E L L S+     + PD  T  S+I+A   L D EM K
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
           ++H  + +        + N L+DMY +   + +A+K+    E+   DVV W +L+SGY  
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFE--EMPLRDVVSWNSLISGYNA 193

Query: 274 SNERDEAR-------RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           +   +EA        +LF EMV +      L I+ +L        ++C  +G L  G +V
Sbjct: 194 NGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSIL--------QACGHLGDLEFGKYV 244

Query: 327 HVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H Y+  +    D               N+  + ++FS +  K+   W S+I  Y   G  
Sbjct: 245 HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKM 304

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM----- 426
             ++ +F  M+      D +T+  ++++C H    + G   +S+  R   + P M     
Sbjct: 305 GDSLKVFENMKAR----DIITWNTIIASCVHSEDCNLGLRMISRM-RTEGVTPDMATMLS 359

Query: 427 ---------------QHYGC---------------MVDLLGRAGHLEESANFITSMPIPP 456
                          + +GC               ++++  + G L  S      M    
Sbjct: 360 ILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-TK 418

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV-LLANIYA 503
           DV  W++L+ AC  +   K A  AF  +     + D  HV  +A I+A
Sbjct: 419 DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD--HVAFVAIIFA 464


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 191/547 (34%), Positives = 299/547 (54%), Gaps = 47/547 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG++    Q+F+K+P R+++SWN MI+ +T  G  R+ L L  +M  +G  PDE T
Sbjct: 149 MYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFT 208

Query: 196 MVSLISARTKLRDLEMGKNLH--LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
             S + A   L  +  G  +H  L      + I   + + +VD+Y KCG + EAQK+  R
Sbjct: 209 FTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDR 268

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
             I++ +++ W+ L+ G+ +     EA  LF ++ E        ++S M+   A+     
Sbjct: 269 --IEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFAD----- 321

Query: 314 CASIGALYHGIWVHVYIKKN----QISIDN-----------IELAYDLFSEISEKNVYLW 358
              +  +  G  +H YI K      IS+ N            E A  LFSE+  +NV  W
Sbjct: 322 ---LALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSW 378

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T +I  Y   G  +KAI LF  M+  G + D+V ++ALLSACSH GL+ E  ++ S+   
Sbjct: 379 TVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCN 438

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            + +KP ++HY CMVD+LGRAG L+E+ N I +M + P+  IW +LL ACR H N+++  
Sbjct: 439 NHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGR 498

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
              + L   D  N   +V+++NIYA+AG   +  R+R  ++  GLKK+ G S +E    +
Sbjct: 499 EVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEI 558

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ-----GL-----------QETSLQ-HRERL 581
           H F  GD  +P +E+I+ ML E+E  ++++     GL           +E +L+ H E+L
Sbjct: 559 HFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKL 618

Query: 582 AVAFGLISTS---EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           A+   L+      +   IR+  NLR+CGDCH F+K  S++  +  V+RD  RFHRF+ G 
Sbjct: 619 AIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGL 678

Query: 639 CSCRDYW 645
           CSC DYW
Sbjct: 679 CSCGDYW 685



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 166/370 (44%), Gaps = 37/370 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KC ++   C +FD++  R+V+SW  ++  Y   G  +  L LL +MG  GV P+E T
Sbjct: 48  MYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFT 107

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             + + A   L  +E G  +H    +S  +    + N  +DMY KCG+IG A+++  +  
Sbjct: 108 FSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMP 167

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
               ++V W  +++G+       ++  LF  M  +  +      +  L        K+C 
Sbjct: 168 FR--NLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTL--------KACG 217

Query: 316 SIGALYHGIWVHVYI--KKNQISIDNIEL---------------AYDLFSEISEKNVYLW 358
           ++GA+  G  +H  +  +   ISI NI                 A  +F  I +KN+  W
Sbjct: 218 ALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISW 277

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           +++I  +A  G+  +A+DLF ++ E+ +  D      ++   +   LV++G     K+  
Sbjct: 278 SALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQG-----KQMH 332

Query: 419 VYNIKP----KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
            Y +K      +     ++D+  + G  EE+    + M +   VS W+ ++     H   
Sbjct: 333 CYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVS-WTVMITGYGKHGLG 391

Query: 475 KLAEHAFKHL 484
           + A H F  +
Sbjct: 392 EKAIHLFNRM 401



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 124/273 (45%), Gaps = 40/273 (14%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD------------- 306
           D+++   L+  Y K +  D A  +FD M+ERN++SWT ++ G L +              
Sbjct: 38  DLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMG 97

Query: 307 ------AEFKY----KSCASIGALYHGIWVHVYIKKN---------QISID------NIE 341
                  EF +    K+C ++G + +G+ +H    K+           +ID       I 
Sbjct: 98  YSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIG 157

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           +A  +F+++  +N+  W ++IA +   G+ +K++ LF  M+  G  PD+ TF + L AC 
Sbjct: 158 MAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACG 217

Query: 402 HGGLVDEGYDF-LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
             G +  G     S  +R + I  +      +VDL  + G+L E+      +     +S 
Sbjct: 218 ALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLIS- 276

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           WS+L++      N+  A   F+ L E+    DG
Sbjct: 277 WSALIQGFAQEGNLLEAMDLFRQLRESVSNVDG 309


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 182/539 (33%), Positives = 286/539 (53%), Gaps = 42/539 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMV 197
           K G  ++  +LFD++PNRD++SWN+++S  +  G     L    +M  E G  P+EVT++
Sbjct: 186 KLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLL 245

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S++SA   +  L+ GK+LH  + +  M     ++N L++MY K G +  A +L    E+ 
Sbjct: 246 SVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF--EEMP 303

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
              +V W ++V  +  +   ++   LF+ M    +      +  +L        ++C   
Sbjct: 304 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALL--------RACTDT 355

Query: 318 GALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVI 362
           G       +H YI +   + D                +  + D+F EI +++   WT+++
Sbjct: 356 GLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAML 415

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           A YA+    ++AI LF  M + G + D VTF  LLSACSH GLV+EG  +    S VY +
Sbjct: 416 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 475

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +P++ HY CMVDLLGR+G LE++   I SMP+ P   +W +LL ACR + NV+L +   +
Sbjct: 476 EPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAE 535

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L   DP +   +++L+NIY+ AG     S++R  +++  L +  G S IE G  +H+F 
Sbjct: 536 QLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFV 595

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERLAVAFG 586
            GD  +P S+EI+  L E+   + + G    +                 +H E+LA+AFG
Sbjct: 596 VGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFG 655

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           L+ T     + I  NLRICGDCHS  K  S +  R I+IRD+ RFH F  G CSCRDYW
Sbjct: 656 LLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 48/246 (19%)

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY--EIDE 258
           S RTK+  + +GK     L  S++ ++ S++  LV     C  +     +  R    ++ 
Sbjct: 119 STRTKVA-VFLGK-----LHNSSL-LADSIVQSLVFAISSCTSVSYCSAIHARVIKSLNY 171

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM---------LNQDAEF 309
            D  +   LVS Y K    ++A+RLFDEM  R+L+SW  ++SG+         LN     
Sbjct: 172 SDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRM 231

Query: 310 KYKS---------------CASIGALYHGIWVHVYIKKNQIS---------------IDN 339
           + +S               CA +GAL  G  +H  + K  +S               +  
Sbjct: 232 RTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGF 291

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           ++ A  LF E+  +++  W S++  +   G+A+K +DLF  M+  G  PDQ T +ALL A
Sbjct: 292 LDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRA 351

Query: 400 CSHGGL 405
           C+  GL
Sbjct: 352 CTDTGL 357



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 113/284 (39%), Gaps = 54/284 (19%)

Query: 39  PVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  + ++ V  +C+   ++DE + +H  ++   +    ++   +       G L  A Q+
Sbjct: 239 PNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQL 298

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQ---------------------------------- 121
             +     +  WNS++     NGY +                                  
Sbjct: 299 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLG 358

Query: 122 -EVFAIYLY---------LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
            +  +I+ Y         ++  T LLN   K G+L     +F+++ +RD I+W  M++ Y
Sbjct: 359 RQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGY 418

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
                 RE + L   M  EGV  D VT   L+SA +    +E GK     + E   ++  
Sbjct: 419 AVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSE-VYRVEP 477

Query: 229 SLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
            L +Y  +VD+  + G++ +A +L+    ++    V W  L+  
Sbjct: 478 RLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGV-WGALLGA 520


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/475 (37%), Positives = 276/475 (58%), Gaps = 48/475 (10%)

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
           + D+ +G+ +H  +  S     GSL+   N L+ +Y  CG +  A K+  +  + E D+V
Sbjct: 1   MADVRLGETIHSVVIRSGF---GSLIYVQNSLLHLYANCGDVASAYKVFDK--MPEKDLV 55

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            W ++++G+ ++ + +EA  L+ EM  + +      I  +L+        +CA IGAL  
Sbjct: 56  AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLS--------ACAKIGALTL 107

Query: 323 GIWVHVYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  VHVY+ K         + + +D       +E A  LF E+ +KN   WTS+I   A+
Sbjct: 108 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 167

Query: 368 AGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
            G  ++AI+LF  ME T G  P ++TF+ +L ACSH G+V EG+++  +    Y I+P++
Sbjct: 168 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI 227

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +H+GCMVDLL RAG ++++  +I SMP+ P+V IW +LL AC  H +  LAE A   + +
Sbjct: 228 EHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ 287

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            +P + G +VLL+N+YA   R  D+ +IR ++   G+KK  G+SL+E G  VH+F  GD 
Sbjct: 288 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDK 347

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLIST 590
            +P S+ IY  L E+   L+ +G                 +   + H E++A+AF LIST
Sbjct: 348 SHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIST 407

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            E++ I +V NLR+C DCH  +K+ S+VYNREIV+RD  RFH F+ G CSC+DYW
Sbjct: 408 PERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 50/272 (18%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           E IHS +I +       +   +       GD+  A ++  +  E ++  WNS+I     N
Sbjct: 8   ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 67

Query: 118 GYPQEVFAIY-----------------------------------LYLV---------TR 133
           G P+E  A+Y                                   +Y++         + 
Sbjct: 68  GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 127

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGV 189
            VLL+   +CG+++E   LFD++ +++ +SW ++I      G  +E + L   M   EG+
Sbjct: 128 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 187

Query: 190 SPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
            P E+T V ++ A +    ++ G +      EE  ++        +VD+  + G++ +A 
Sbjct: 188 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 247

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           + +    + + +VV+W TL+       + D A
Sbjct: 248 EYIKSMPM-QPNVVIWRTLLGACTVHGDSDLA 278


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 203/669 (30%), Positives = 325/669 (48%), Gaps = 128/669 (19%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131
           D  + + + + L   GDL  A+++     E  + +W  +I   +     +E   I+L  +
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFL 246

Query: 132 ---------TRTVLLNKCGKLKEV----------------------CQL----------- 149
                    T + +++ C +L  V                      C L           
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQ 306

Query: 150 --------FDKLPNRDVISWNTMISCYTSMGMYREG-LGLLSKMGAEGVSPDEVTMVSLI 200
                   F+++   DVISW  +IS Y   G+     + L  +M  E + P+ +T  S++
Sbjct: 307 AMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSIL 366

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A   + D + G+ +H  + +S    + ++ N LV MY + G +                
Sbjct: 367 KACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCM---------------- 410

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL-------------MISGMLNQDA 307
                            +EARR+F+++ ER++IS                M  G+ +   
Sbjct: 411 -----------------EEARRVFNQLYERSMISCITEGRDAPLDHRIGRMDMGISSSTF 453

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISE 352
                + AS+G L  G  +H    K     D                +E A   F+E+ +
Sbjct: 454 ASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKD 513

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           +NV  WTS+I+  A  G+A++A+ LF +M  TG KP+ VT+IA+LSACSH GLV EG ++
Sbjct: 514 RNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEY 573

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
                R + + P+M+HY CMVDLL R+G ++E+  FI  MP+  D  +W +LL ACR H 
Sbjct: 574 FRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHD 633

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N+++ E A K++ E +P +   +VLL+N+YA AG  D+++RIR  +RD  L K+ G S +
Sbjct: 634 NIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWM 693

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQ 576
           E     H+F +GD  +P +++IY  L+ +   ++  G + +TS               LQ
Sbjct: 694 EVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQ 753

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H E++AVAFGLI+TS    IRI  NLR+C DCHS +K  S+   REI++RD+ RFHR + 
Sbjct: 754 HSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKD 813

Query: 637 GQCSCRDYW 645
           G+CSC +YW
Sbjct: 814 GECSCGEYW 822



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 136/298 (45%), Gaps = 34/298 (11%)

Query: 135 VLLNKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
            L ++CG +     +FD +   RD++SW  M SC    G  RE L L+ +M   G+ P+ 
Sbjct: 92  TLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNA 151

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQKL 250
            T+ ++  A     +L       +      M + G+ +   + L+DM  + G +  A+K+
Sbjct: 152 YTLCAVAHACFP-HELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKV 210

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                + E  VV+WT L+S YV+    +EA  +F + +E         +S M++      
Sbjct: 211 FD--GLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMIS------ 262

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISID--------------NIELAYD----LFSEISE 352
             +C  +G++  G+ +H    +   + D              NIE A D    +F  + +
Sbjct: 263 --ACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRK 320

Query: 353 KNVYLWTSVIAAYAMAG-HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
            +V  WT++I+ Y  +G    K + LF EM     KP+ +T+ ++L AC++    D G
Sbjct: 321 NDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSG 378



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 123/271 (45%), Gaps = 16/271 (5%)

Query: 208 DLEMGKNLHL-FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           DL +G+ LH   L    +     + N L+ +Y +CG +  A+ +         D+V WT 
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMR-GLRDIVSWTA 121

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLI--SWTLMISGMLNQDAEFKYKSCASIGALYH-- 322
           + S   ++    E+  L  EM+E  L+  ++TL          E        +  L H  
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKM 181

Query: 323 GIW-VHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           G+W   + +    I +     ++  A  +F  + EK V +WT +I+ Y     A++A+++
Sbjct: 182 GLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEI 241

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           FL+  E G +PD+ T  +++SAC+  G V  G    S   R+          G +VD+  
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCG-LVDMYA 300

Query: 438 RAGHLEES---ANFITSMPIPPDVSIWSSLL 465
           ++ ++E++   AN +       DV  W++L+
Sbjct: 301 KS-NIEQAMDYANKVFERMRKNDVISWTALI 330


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 296/572 (51%), Gaps = 69/572 (12%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG+L    +LF+ +P+R+V +W   ++ ++  G + E L    +M   G  PD VT
Sbjct: 106 MYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVT 165

Query: 196 MVSLISARTKLRD--LEMGKNLHLFLEESTMKISGSLLNYLV-----DMYFKCGKIGEAQ 248
              +++A  ++    ++ G+ +H +      +ISG L N +V      MY KCG++ +A+
Sbjct: 166 FSVILAAIAQMGAAAIDQGREIHRY-----ARISGLLPNVVVGTAVISMYGKCGRLDDAR 220

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML----N 304
                 E+   + V W  +++ Y       EA  LF EM + + + W  MI+        
Sbjct: 221 AAF--EELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRG 278

Query: 305 QDAEFKYKS--------------------CASIGALYHGIWVHVYIKKNQISID------ 338
           + A   Y+S                    CA + AL  G  +H  ++      +      
Sbjct: 279 KQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNA 338

Query: 339 ---------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                     ++ A D+F  +  K+   W ++I++YA  GH+ +A+ L+ EM+  G KP 
Sbjct: 339 LVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPT 398

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
           +VTF+ LLSACSHGGLV +G D+  +    + IKP + H+GC++DLLGR G L E+   +
Sbjct: 399 EVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVL 458

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
            SMPI  +   W SLL AC+ H ++K    A   + +  P   G +VLL+NIYA AGR  
Sbjct: 459 KSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWK 518

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           D+ +IR  +   G+KK  G S IE G  VH+F SGD  +P  EEIY+ L ++   ++  G
Sbjct: 519 DVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLG 578

Query: 570 -LQETS---------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
            + +TS               + H E+LA+ +G +    K+ +RIV NLR+C DCH+  K
Sbjct: 579 YVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATK 638

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             S++  R+IV+RD  RFH F+ G CSCRDYW
Sbjct: 639 FMSRITGRKIVVRDAARFHLFENGSCSCRDYW 670



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 26/235 (11%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           ID+   IH +   + L+ +  + T V       G L  A+    +        WN+++ N
Sbjct: 181 IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 240

Query: 114 QLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173
             ++                       G+ +E  +LF ++ + D + WN MI+ Y   G 
Sbjct: 241 YKLD-----------------------GRDREALELFREMHDADSVCWNAMIAAYAQHGR 277

Query: 174 YREGLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
            ++ L L   M     ++P + T V++I    +L  L+ G+ +H  +  +    +  + N
Sbjct: 278 GKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSN 337

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            LV MY KCG + EA  +    ++   D + W T++S Y      D+A  L+ EM
Sbjct: 338 ALVHMYGKCGCLDEALDVFHSMKLK--DEISWNTIISSYAYHGHSDQALLLYQEM 390



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 127/283 (44%), Gaps = 45/283 (15%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA----RRLFD 285
           L N L++MY KCG++  A++L     +   +V  WT  ++ +  +    EA    RR++ 
Sbjct: 99  LANLLIEMYGKCGRLPYARELF--ESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQ 156

Query: 286 EMVERNLISWTLMISGMLNQ-----DAEFKYKSCASIGALYHGIWV-----HVYIK---- 331
                + ++++++++ +        D   +    A I  L   + V      +Y K    
Sbjct: 157 SGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRL 216

Query: 332 ------------KNQIS----IDNIEL------AYDLFSEISEKNVYLWTSVIAAYAMAG 369
                       KN ++    + N +L      A +LF E+ + +   W ++IAAYA  G
Sbjct: 217 DDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHG 276

Query: 370 HAQKAIDLFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
             ++A+DL+  M +T    P Q TF+ ++  C+    + +G   +  + R  N    +  
Sbjct: 277 RGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRA-IHARVRATNFDANLLV 335

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
              +V + G+ G L+E+ +   SM +  ++S W++++ +   H
Sbjct: 336 SNALVHMYGKCGCLDEALDVFHSMKLKDEIS-WNTIISSYAYH 377


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 187/538 (34%), Positives = 302/538 (56%), Gaps = 37/538 (6%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L +CG ++E  +LF  L  RD ISW  MI+     G+ RE L +  +M   G + D+ T 
Sbjct: 214 LMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTF 273

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            S+++A   L  L  GK +H ++  +  K +  + + LVDMY KC  I  A+ +  R  +
Sbjct: 274 GSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKR--M 331

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLN-----QDA 307
            + +V+ WT ++ GY ++   +EA ++F EM    VE +  +   +IS   N     + A
Sbjct: 332 PQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGA 391

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
           +F  +      AL  G+   + +    I++     + E ++ LF+E++ ++   WT+++A
Sbjct: 392 QFHCR------ALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLA 445

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            YA  G A + I LF  M   G KPD VTFI +LSACS  GLV++G  +     + + I 
Sbjct: 446 GYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIM 505

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P + H  C++DLLGRAG LEE+ NFI +MP  PDV  W++LL +CR H ++++ + A   
Sbjct: 506 PIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADS 565

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L   +P N  ++VLL+++YA  G+ D ++++R  +RD  ++K+ GYS I+  G VH F++
Sbjct: 566 LIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSA 625

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG-----------LQETSL-----QHRERLAVAFGL 587
            D  +P   +IY  L ++   + ++G           ++E+        H E+LA+AFGL
Sbjct: 626 DDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGL 685

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I       IR++ NLR+CGDCH+  K  S++  REI++RD  RFH F+ G CSC D+W
Sbjct: 686 IFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 230/499 (46%), Gaps = 94/499 (18%)

Query: 46  MVERSCSSIDEFERIHSHLITTNLMRDPQ--ISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           +++  C S ++ +    H +    ++ P+  +S  +       G+L YA  +     +P 
Sbjct: 11  LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           +  WN+I+             ++Y          +K G L ++ Q+F+ +P RD +SWN 
Sbjct: 71  LFSWNTIL-------------SVY----------SKLGLLSQMQQIFNLMPFRDGVSWNL 107

Query: 164 MISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
            IS Y + G   + + +   M  +  ++ + +T  +++   +K R +++G+         
Sbjct: 108 AISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGR--------- 158

Query: 223 TMKISGSLLNY-----------LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
             +I+G +L +           LVDMY K G I +A++     E+ E +VV+  T+++G 
Sbjct: 159 --QINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFD--EMPERNVVMCNTMITGL 214

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE-------------------FKYK 312
           ++    +E++RLF  + ER+ ISWT+MI+G++    E                   F + 
Sbjct: 215 MRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFG 274

Query: 313 S----CASIGALYHGIWVHVYI----KKNQISID-----------NIELAYDLFSEISEK 353
           S    C S+ AL  G  +H Y+     K+ + +            +I+ A  +F  + +K
Sbjct: 275 SVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQK 334

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           NV  WT+++  Y   G +++A+ +F EM+  G +PD  T  +++S+C++   ++EG  F 
Sbjct: 335 NVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFH 394

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA----CR 469
             ++ V  +   +     ++ L G+ G  E S    T M I  +VS W++LL       +
Sbjct: 395 C-RALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVS-WTALLAGYAQFGK 452

Query: 470 CHQNVKLAEHAFKHLTETD 488
            ++ + L E    H  + D
Sbjct: 453 ANETIGLFERMLAHGLKPD 471



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 129/343 (37%), Gaps = 82/343 (23%)

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            SL+    + ++    K LH  + ++  +    L N L+  Y+K G +  A  +     I
Sbjct: 9   ASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFD--HI 66

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYK 312
            + ++  W T++S Y K     + +++F+ M  R+ +SW L ISG  N     DA   YK
Sbjct: 67  PQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYK 126

Query: 313 -------------------------SCASIG------ALYHGIWVHVYIKKNQISI-DNI 340
                                     C  +G       L  G    V++    + +   +
Sbjct: 127 LMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKL 186

Query: 341 ELAYD---LFSEISEKNVYL-------------------------------WTSVIAAYA 366
            L YD    F E+ E+NV +                               WT +I    
Sbjct: 187 GLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLM 246

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G  ++A+D+F EM   G   DQ TF ++L+AC     + EG     K+   Y I+   
Sbjct: 247 QNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEG-----KQIHAYVIRTDH 301

Query: 427 QHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           +        +VD+  +   ++ +      MP   +V  W+++L
Sbjct: 302 KDNVFVGSALVDMYSKCRSIKSAETVFKRMP-QKNVISWTAML 343


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/543 (33%), Positives = 285/543 (52%), Gaps = 48/543 (8%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           +K  ++ E   LFD++P  D +S+N +IS Y+    Y   L    +M   G         
Sbjct: 296 SKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFA 355

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQKLLGRY 254
           +++S    L  L+MG+ LH    ++ +  + S+L   N LVDMY KC    EA+ +    
Sbjct: 356 TMLSIAANLSSLQMGRQLHC---QALLATADSILHVGNSLVDMYAKCEMFEEAELIFK-- 410

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + +   V WT L+SGYV+        +LF +M   NL +     + +L        K+ 
Sbjct: 411 SLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVL--------KAS 462

Query: 315 ASIGALYHGIWVHVYIKKN---------------QISIDNIELAYDLFSEISEKNVYLWT 359
           AS  +L  G  +H +I ++                    +I+ A  +F E+ ++N   W 
Sbjct: 463 ASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWN 522

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I+A+A  G  + AI  F +M E+G +PD V+ + +L+ACSH G V++G ++    S +
Sbjct: 523 ALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPI 582

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           Y I PK +HY CM+DLLGR G   E+   +  MP  PD  +WSS+L ACR H+N  LAE 
Sbjct: 583 YGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAER 642

Query: 480 AFKHLTETDPLND-GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
           A + L   + L D  A+V ++NIYA AG  + +  ++  +R+ G+KK   YS +E    +
Sbjct: 643 AAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKI 702

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ETSLQHRERLA 582
           H F+S D  +P+ +EI   +NE+   ++++G +                E+   H ERLA
Sbjct: 703 HVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLA 762

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           VAF LIST E   I ++ NLR C DCH+ +K+ S++  REI +RD  RFH F  G CSC 
Sbjct: 763 VAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCG 822

Query: 643 DYW 645
           DYW
Sbjct: 823 DYW 825



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 172/384 (44%), Gaps = 24/384 (6%)

Query: 129 YLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           +L    VLL    +  +L   C LF+++P +D +++NT+I+ Y   G+Y E + L  KM 
Sbjct: 183 FLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMR 242

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
             G  P + T   ++ A   L D  +G+ LH     +      S+ N ++D Y K  ++ 
Sbjct: 243 QSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVL 302

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV-----ERNLISWTLM-I 299
           E + L    E+ E+D V +  ++S Y ++++ + +   F EM       RN    T++ I
Sbjct: 303 ETRMLFD--EMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360

Query: 300 SGMLNQDAEFKYKSCASIGALYHGI------WVHVYIKKNQISIDNIELAYDLFSEISEK 353
           +  L+     +   C ++ A    I       V +Y K      +  E A  +F  + ++
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAK-----CEMFEEAELIFKSLPQR 415

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
               WT++I+ Y   G     + LF +M  +  + DQ TF  +L A +    +  G    
Sbjct: 416 TTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLH 475

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           +   R  N++      G +VD+  + G ++++      MP    VS W++L+ A   + +
Sbjct: 476 AFIIRSGNLENVFSGSG-LVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISAHADNGD 533

Query: 474 VKLAEHAFKHLTETDPLNDGAHVL 497
            + A  AF  + E+    D   +L
Sbjct: 534 GEAAIGAFAKMIESGLQPDSVSIL 557



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 163/422 (38%), Gaps = 46/422 (10%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           R+ + +I T    D   S  + E L+  G +  A+++       E+   N++  N +I+G
Sbjct: 34  RVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVY-----DEMPHKNTVSTNTMISG 88

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           +                   K G +     LFD +P+R V++W  ++  Y     + E  
Sbjct: 89  HV------------------KTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAF 130

Query: 179 GLLSKM--GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL--NYL 234
            L  +M   +    PD VT  +L+              +H F  +     +  L   N L
Sbjct: 131 KLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVL 190

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           +  Y +  ++  A  L    EI E D V + TL++GY K     E+  LF +M +     
Sbjct: 191 LKSYCEVRRLDLACVLF--EEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQP 248

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK-----NQI-----SIDNIELAY 344
                SG+L            ++G   H + V     +     NQI       D +    
Sbjct: 249 SDFTFSGVLKAVVGLHD---FALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETR 305

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF E+ E +   +  VI++Y+ A   + ++  F EM+  G       F  +LS  ++  
Sbjct: 306 MLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLS 365

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
            +  G     +   +      + H G  +VD+  +    EE+     S+P    VS W++
Sbjct: 366 SLQMGRQLHCQA--LLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS-WTA 422

Query: 464 LL 465
           L+
Sbjct: 423 LI 424


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/544 (34%), Positives = 288/544 (52%), Gaps = 33/544 (6%)

Query: 130 LVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           L T+ V L   CG++    +LFD +P R+V  WN +I  Y   G     + L   M   G
Sbjct: 99  LSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHG 158

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           V PD  T   ++ A   L DLE G+ +H  +  +       +   +VDMY KCG + +A+
Sbjct: 159 VEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDAR 218

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
            +     +   D V+W ++++ Y ++    EA  L  +M   N I  T  I+ +++  + 
Sbjct: 219 AVFDGIAVR--DAVVWNSMIAAYGQNGRPMEALALCRDMAA-NGIGPT--IATLVSAVSA 273

Query: 309 FKYKSCASIGALYHGI-WVHVYIKKNQISIDNIEL---------AYDLFSEISEKNVYLW 358
               +    G   HG  W   +  ++++    +++         A  LF ++ ++ +  W
Sbjct: 274 AADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSW 333

Query: 359 TSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
            ++I  Y M GHA +A+ LF +M+ +    PD +TF+ +LSAC+HGG+V+E  +F     
Sbjct: 334 NAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMV 393

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             Y+IKP +QHY C++D+LG  G  EE+ + I  M I PD  IW +LL  C+ H+NV+L 
Sbjct: 394 NAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELG 453

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E A + L E +P + G +V L+NIYA++G+ +  +R+R  + + GLKK L  S IE  G 
Sbjct: 454 ELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGK 513

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERL 581
            H F  GD  +P S+EIY  L  +E  +   G                 +     H ERL
Sbjct: 514 THGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERL 573

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AFGLIST   T + +  NLR+C DCH  +K+ SQ+  REI+IRD  R+H F  G+CSC
Sbjct: 574 AIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSC 633

Query: 642 RDYW 645
           +DYW
Sbjct: 634 KDYW 637



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 33/204 (16%)

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L  G+ LH  L  S +     L   LVD+Y  CG++G A++L     + + +V LW  L+
Sbjct: 78  LRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFD--GMPKRNVFLWNVLI 135

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYHGI 324
             Y +   R+ A RL+  MVE  +            +   F Y    K+CA++  L  G 
Sbjct: 136 RAYAREGPREAAVRLYRGMVEHGV------------EPDNFTYPLVLKACAALLDLETGR 183

Query: 325 WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
            VH  +   +   D                ++ A  +F  I+ ++  +W S+IAAY   G
Sbjct: 184 EVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNG 243

Query: 370 HAQKAIDLFLEMEETGTKPDQVTF 393
              +A+ L  +M   G  P   T 
Sbjct: 244 RPMEALALCRDMAANGIGPTIATL 267


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/492 (36%), Positives = 269/492 (54%), Gaps = 46/492 (9%)

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC-GKIGE 246
           G+SP++     ++ A   LRDL +GK +H  L +        + N +V MY  C G +  
Sbjct: 104 GISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEF 163

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+KL    E+ ++D V WT ++ GY +  +   A  LF +M           I+G+   D
Sbjct: 164 ARKLFD--EMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKM----------QIAGVCPDD 211

Query: 307 AEFK--YKSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSE 349
                   +C  +GAL  G W+  YI+K ++                  +++ A  LF  
Sbjct: 212 VTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRN 271

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           +S++ +  WTSVI   AM G   +A+ LF EM+ +G  P+ + FI LLSACSH GLV+ G
Sbjct: 272 MSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERG 331

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
             + S+ +R + I PK++HYGCMVDLL RAG + E+  F+  MPI P+  IW +L+ ACR
Sbjct: 332 RQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACR 391

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            H  +KL E   K L   +P+++  +VLL+NIY K    +  S+IR+ +   G++K  G 
Sbjct: 392 VHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGS 451

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ------------- 576
           ++IE    +H+F  GD  +    EI  M+NE+   +++ G   T+ +             
Sbjct: 452 TMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDA 511

Query: 577 ---HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
              H E+LA+AF L++T   + IRI  NLR+CGDCHS  K  S++YNREIV+RD  RFH 
Sbjct: 512 LSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHH 571

Query: 634 FQGGQCSCRDYW 645
           F+ GQCSC D+W
Sbjct: 572 FRDGQCSCGDFW 583



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 128/271 (47%), Gaps = 39/271 (14%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G ++   +LFD++P  D ++W  MI  Y  +G     +GL  KM   GV PD+VTMVS++
Sbjct: 159 GGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVL 218

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           SA T L  LE+GK +  ++E+  +  +  L N LVDM+ KCG + +A  L     + +  
Sbjct: 219 SACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLF--RNMSKRT 276

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           +V WT+++ G        EA  LF+EM    ++   +   G+L+        +C+  G  
Sbjct: 277 IVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLS--------ACSHSGL- 327

Query: 321 YHGIWVHVYIKKNQISIDNIELAYDLFSEISEK-----NVYLWTSVIAAYAMAGHAQKAI 375
                              +E     FSE++ +      +  +  ++   + AG   +A+
Sbjct: 328 -------------------VERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEAL 368

Query: 376 DLFLEMEETGTKPDQVTFIALLSACS-HGGL 405
           +    +E    +P+ + +  L+SAC  HG L
Sbjct: 369 EF---VERMPIEPNPIIWRTLISACRVHGEL 396



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 8/139 (5%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG + +   LF  +  R ++SW ++I      G   E + L  +M A G+ P+++ 
Sbjct: 255 MFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIA 314

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMK--ISGSLLNY--LVDMYFKCGKIGEAQKLL 251
            + L+SA +    +E G+    +  E T +  I   + +Y  +VD+  + G + EA + +
Sbjct: 315 FIGLLSACSHSGLVERGRQ---YFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFV 371

Query: 252 GRYEIDEVDVVLWTTLVSG 270
            R  I E + ++W TL+S 
Sbjct: 372 ERMPI-EPNPIIWRTLISA 389



 Score = 42.7 bits (99), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 31/216 (14%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQ 78
           +GL  KM+I    A VCP  + ++ V  +C+ +   E    I S++    +++  ++S  
Sbjct: 196 VGLFRKMQI----AGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNA 251

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL-------- 130
           + +     GD+  A  + R   +  I  W S+I    ++G   E  +++  +        
Sbjct: 252 LVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPE 311

Query: 131 -VTRTVLLNKCGK----------LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
            +    LL+ C              E+ + F  +P   +  +  M+   +  G+  E L 
Sbjct: 312 DIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPK--IEHYGCMVDLLSRAGLVTEALE 369

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
            + +M  E   P+ +   +LISA     +L++G+++
Sbjct: 370 FVERMPIE---PNPIIWRTLISACRVHGELKLGESI 402


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/539 (33%), Positives = 297/539 (55%), Gaps = 42/539 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMV 197
           KCG++    +LFD++ ++ +++WN MI  Y+      E    + KM   G + PD +TM+
Sbjct: 274 KCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMI 333

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +L+    +L  + +GK++H F   +       L   LVDMY +CGK+  A+ L G  +++
Sbjct: 334 NLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFG--QMN 391

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           E +++ W  +++ Y K+ E  +A  LF ++  + L      I+ +L   AE        +
Sbjct: 392 ERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAE--------L 443

Query: 318 GALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVI 362
            +L     +H Y+ K ++  +               N+  A ++F  ++ K+V  W +VI
Sbjct: 444 ASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVI 503

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
            AYA+ G  + +I+LF EM E G +P+  TF++LL +CS  GLV+EG+++ +   R YNI
Sbjct: 504 MAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNI 563

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
            P ++HYGC++DL+GR G+L+ + NFI  MP+ P   IW SLL A R   +V+LAE A +
Sbjct: 564 NPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAE 623

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
           H+   +  N G +VLL+N+YA+AGR +D+ RI+  ++  GL+K +G S+++      +F 
Sbjct: 624 HILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFV 683

Query: 543 SGD---------------IFNPHSEEIYL-MLNEIEMTLQQQGLQETSLQHRERLAVAFG 586
           + D               I     E++Y+  L +   +  ++    ++  H  RLA+ FG
Sbjct: 684 NQDRSDNEINMVYDVLDIISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFG 743

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LIST+    + +  N+RIC  CH F K  S+   REI++RD+  FH F GG CSC DYW
Sbjct: 744 LISTTIGNPVLVRKNIRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 170/373 (45%), Gaps = 38/373 (10%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
           ++  K G ++    +F ++P RD++SWN+MIS Y S+G     L    +M A G+  D  
Sbjct: 169 IMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRF 228

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           +++ ++ A +    L  GK +H  +  S +++   +   LVDMY KCG++  A++L    
Sbjct: 229 SVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFD-- 286

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI--SWTLMISGMLNQDAEFKYK 312
           +I +  +V W  ++ GY  + +  E+     +M E   +   W  MI+ +          
Sbjct: 287 QITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLL---------P 337

Query: 313 SCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYL 357
            CA + A+  G  VH +  +N                     ++ A  LF +++E+N+  
Sbjct: 338 PCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLIS 397

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           W ++IA+Y   G  +KA+ LF ++     KPD  T  ++L A +    + E     +++ 
Sbjct: 398 WNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLRE-----AEQI 452

Query: 418 RVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
             Y  K K+         +V + G+ G+L  +      M    DV  W++++ A   H  
Sbjct: 453 HGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTF-KDVISWNTVIMAYAIHGF 511

Query: 474 VKLAEHAFKHLTE 486
            +++   F  + E
Sbjct: 512 GRISIELFSEMRE 524



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 144/332 (43%), Gaps = 35/332 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +K    LF+ +   D   WN MI  +   G++ + +    +M   GV  D  T   +I
Sbjct: 74  GYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVI 133

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A   L DL  G+ +H  + +S + +   + N L+ MY K G I  A+ +    E+   D
Sbjct: 134 KACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVF--REMPVRD 191

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           +V W +++SGYV   +   +   F EM    +      + G+L         +C+  G L
Sbjct: 192 LVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILG--------ACSLEGFL 243

Query: 321 YHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAY 365
            +G  +H  + ++++ +D                ++ A  LF +I++K++  W ++I  Y
Sbjct: 244 RNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGY 303

Query: 366 AMAGHAQKAIDLFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK- 423
           ++   + ++     +M+E G   PD +T I LL  C+    +      L K    + I+ 
Sbjct: 304 SLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAI-----LLGKSVHGFAIRN 358

Query: 424 ---PKMQHYGCMVDLLGRAGHLEESANFITSM 452
              P +     +VD+ G  G L+ +      M
Sbjct: 359 GFLPHLVLETALVDMYGECGKLKPAECLFGQM 390



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 138/329 (41%), Gaps = 64/329 (19%)

Query: 42  LDVIMVERSCSSIDEFER----IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97
             VI +  +CS ++ F R    IH  ++ + L  D  + T + +     G + YA+++  
Sbjct: 228 FSVIGILGACS-LEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFD 286

Query: 98  QGDEPEIKIWNSIIENQLINGYPQEVFA-------------------------------- 125
           Q  +  I  WN++I    +N    E FA                                
Sbjct: 287 QITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAIL 346

Query: 126 -------------IYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
                           +LV  T L++   +CGKLK    LF ++  R++ISWN MI+ YT
Sbjct: 347 LGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYT 406

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
             G  R+ + L   +  + + PD  T+ S++ A  +L  L   + +H ++ +  +  +  
Sbjct: 407 KNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTF 466

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           + N +V MY KCG +  A+++  R      DV+ W T++  Y        +  LF EM E
Sbjct: 467 VSNSIVFMYGKCGNLLRAREIFDRMTFK--DVISWNTVIMAYAIHGFGRISIELFSEMRE 524

Query: 290 RNL---------ISWTLMISGMLNQDAEF 309
           +           +  +  ++G++N+  E+
Sbjct: 525 KGFEPNGSTFVSLLLSCSVAGLVNEGWEY 553



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 38/190 (20%)

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DA------ 307
           E + V  T  +S YV+      A  LF+ M + +   W +MI G ++     DA      
Sbjct: 57  ERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHR 116

Query: 308 -------------EFKYKSCASIGALYHGIWVHVYIKKNQISID---------------N 339
                         F  K+C  +  L  G  VH  + K+ + +D                
Sbjct: 117 MEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGC 176

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           IE A  +F E+  +++  W S+I+ Y   G   +++  F EM+ +G K D+ + I +L A
Sbjct: 177 IESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGA 236

Query: 400 CSHGGLVDEG 409
           CS  G +  G
Sbjct: 237 CSLEGFLRNG 246


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 299/542 (55%), Gaps = 47/542 (8%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCY-TSMGMYREGLGLLSKMGAEG-VSPDEVTMVS 198
           G + +  ++FD++ +  V+SW  +I+ Y  +  +  E + L S+M  +G V P+  T  S
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
              A   L D  +GK +     +  +  + S+ N ++ M+ K  ++ +AQ+      + E
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF--ESLSE 436

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            ++V + T + G  ++   ++A +L  E+ ER L       + +L+          A++G
Sbjct: 437 KNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLS--------GVANVG 488

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           ++  G  +H  + K  +S +               +I+ A  +F+ +  +NV  WTS+I 
Sbjct: 489 SIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMIT 548

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            +A  G A + ++ F +M E G KP++VT++A+LSACSH GLV EG+   +     + IK
Sbjct: 549 GFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIK 608

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           PKM+HY CMVDLL RAG L ++  FI +MP   DV +W + L ACR H N +L + A + 
Sbjct: 609 PKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARK 668

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E DP    A++ L+NIYA AG+ ++ + +R K+++  L K+ G S IE G  +HKF  
Sbjct: 669 ILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYV 728

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL-------------------QHRERLAV 583
           GD  +P++ +IY  L+ +   +++ G + +T L                   QH E++AV
Sbjct: 729 GDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAV 788

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGLISTS+   +R+  NLR+CGDCH+ MK  S V  REIV+RD  RFH F+ G+CSC D
Sbjct: 789 AFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCND 848

Query: 644 YW 645
           YW
Sbjct: 849 YW 850



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 48/290 (16%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FDK+   +V++W  MI+    MG  RE +     M   G   D+ T+ S+ SA  +L 
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 208 DLEMGKNLHLFLEESTMKISGSLLN----YLVDMYFKC---GKIGEAQKLLGRYEIDEVD 260
           +L +GK LH      +  I   L++     LVDMY KC   G + + +K+  R E  +  
Sbjct: 284 NLSLGKQLH------SWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRME--DHS 335

Query: 261 VVLWTTLVSGYVKS-NERDEARRLFDEM-----VERNLISWTLMISGMLNQDAEFKYKSC 314
           V+ WT L++GY+K+ N   EA  LF EM     VE N  +++              +K+C
Sbjct: 336 VMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS------------AFKAC 383

Query: 315 ASIG-----------ALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWT 359
            ++            A   G+  +  +  + IS+    D +E A   F  +SEKN+  + 
Sbjct: 384 GNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYN 443

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + +       + ++A  L  E+ E        TF +LLS  ++ G + +G
Sbjct: 444 TFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKG 493



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 31/255 (12%)

Query: 168 YTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
           + + G  R  +  L  M  +G+ P D VT  SL+ +  + RD  +GK +H  L E  ++ 
Sbjct: 36  HLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEP 95

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
              L N L+ +Y K G   +A+ +        + DVV W+ +++ Y  +    +A ++F 
Sbjct: 96  DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFV 155

Query: 286 EMVERNLIS----WTLMISGMLNQD---------------AEFKYKSCASIGALYHGIWV 326
           E +E  L+     +T +I    N D                 F+   C           +
Sbjct: 156 EFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCS------LI 209

Query: 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
            +++K      ++ E AY +F ++SE NV  WT +I      G  ++AI  FL+M  +G 
Sbjct: 210 DMFVKGE----NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGF 265

Query: 387 KPDQVTFIALLSACS 401
           + D+ T  ++ SAC+
Sbjct: 266 ESDKFTLSSVFSACA 280



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 164/377 (43%), Gaps = 57/377 (15%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
            K ++V +   +   RDV+SW+ M++CY + G   + + +  +    G+ P++    ++I
Sbjct: 114 AKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVI 173

Query: 201 SARTKLRDLEMGK-NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE-AQKLLGRYEIDE 258
            A +    + +G+  L   ++    +    +   L+DM+ K     E A K+  +  + E
Sbjct: 174 RACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK--MSE 231

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
           ++VV WT +++  ++     EA R F +MV     S    +S +        + +CA + 
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV--------FSACAELE 283

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAY-----------------DLFSEISEKNVYLWTSV 361
            L  G  +H +  ++ + +D++E +                   +F  + + +V  WT++
Sbjct: 284 NLSLGKQLHSWAIRSGL-VDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTAL 342

Query: 362 IAAYAMAGH-AQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDE-------GYDF 412
           I  Y    + A +AI+LF EM   G  +P+  TF +   AC  G L D        G  F
Sbjct: 343 ITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC--GNLSDPRVGKQVLGQAF 400

Query: 413 ---LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
              L+  S V N          ++ +  ++  +E++     S+     VS  + L   CR
Sbjct: 401 KRGLASNSSVAN---------SVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451

Query: 470 CHQNVKLAEHAFKHLTE 486
              N+   E AFK L+E
Sbjct: 452 ---NLNF-EQAFKLLSE 464



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 72/136 (52%), Gaps = 2/136 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG +    ++F+ + NR+VISW +MI+ +   G     L   ++M  EGV P+EVT
Sbjct: 518 MYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVT 577

Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V+++SA + +  +  G ++ +   E+  +K        +VD+  + G + +A + +   
Sbjct: 578 YVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTM 637

Query: 255 EIDEVDVVLWTTLVSG 270
              + DV++W T +  
Sbjct: 638 PF-QADVLVWRTFLGA 652



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 89/193 (46%), Gaps = 19/193 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K  ++++  + F+ L  ++++S+NT +        + +   LLS++    +     T  S
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFAS 479

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+S    +  +  G+ +H  + +  +  +  + N L+ MY KCG I  A ++    E   
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFME--N 537

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMISGMLNQDAEFKYKSC 314
            +V+ WT++++G+ K          F++M+E     N +++  ++S            +C
Sbjct: 538 RNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILS------------AC 585

Query: 315 ASIGALYHGIWVH 327
           + +G +  G W H
Sbjct: 586 SHVGLVSEG-WRH 597


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 196/601 (32%), Positives = 327/601 (54%), Gaps = 63/601 (10%)

Query: 95  IIRQGD-EPEIKIWNSIIENQLINGYPQEVFAIYLYL----------VTRTVLL--NKCG 141
           +I  G  EP+  I+N +++   + G  ++   ++ +L          +  ++L    KCG
Sbjct: 81  LINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCG 140

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG---LGLLSKMGAEGVSPDEVTMVS 198
            L+   Q+FD++  +DV++W +MI+ Y+  G        L L  +M  +G+ P+E  + S
Sbjct: 141 SLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSS 200

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+     L     GK +H    +   + +  + + LVDMY +CG++ E++ +    E++ 
Sbjct: 201 LVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFD--ELES 258

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            + V W  L+SG+ +  E +EA  LF +M      +     S +L         S ++ G
Sbjct: 259 KNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLC--------SSSTTG 310

Query: 319 ALYHGIWVHVYIKKNQISI---------------DNIELAYDLFSEISEKNVYLWTSVIA 363
           +L  G W+H ++ K+   +                NI  A  +F  + + +V    S++ 
Sbjct: 311 SLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLI 370

Query: 364 AYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEG--YDFLSKKSRVY 420
            YA  G  ++A++LF EM      +P+ +TF+++L+ACSH GL+DEG  Y  L KK   Y
Sbjct: 371 GYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK---Y 427

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            ++PK+ HY  +VDL GRAG L+++ +FI  MPI P+ +IW +LL A + H+N ++  +A
Sbjct: 428 GLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYA 487

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + + E DP   GAH LL+NIYA AG+  D++++R +++D GLKK+   S +E    VH 
Sbjct: 488 AQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHI 547

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVA 584
           F++ DI +P   ++Y M   +   +++ G                +E +LQ H E+LA+A
Sbjct: 548 FSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALA 607

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F L++T   + IRI+ N+R+CGDCHS +K  S V  REI++RD  RFH F+ G CSCRDY
Sbjct: 608 FALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDY 667

Query: 645 W 645
           W
Sbjct: 668 W 668



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 28/251 (11%)

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
           GL +L  +    + PD      L+   T L  L+ GK +H  L  S  +    + N ++ 
Sbjct: 75  GLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILF 134

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK---SNERDEARRLFDEMVERNLI 293
           MY KCG +  A+++    E+   DVV WT++++GY +   ++    A  LF EMV   L 
Sbjct: 135 MYAKCGSLEIARQVFD--EMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLR 192

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH-----------VYIKKNQISI----D 338
                +S ++        K C  +G+   G  +H           V++  + + +     
Sbjct: 193 PNEFALSSLV--------KCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCG 244

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +  +  +F E+  KN   W ++I+ +A  G  ++A+ LF++M+  G    + T+ ALL 
Sbjct: 245 ELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLC 304

Query: 399 ACSHGGLVDEG 409
           + S  G +++G
Sbjct: 305 SSSTTGSLEQG 315


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/515 (34%), Positives = 276/515 (53%), Gaps = 41/515 (7%)

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N+MI CYT    +   + + ++M   G+ PD  T  +++ +  +L   E+GK +H  + +
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
              + +  +   LV+MY  C  + +A+++    EI + ++V W  L++GY  +    +  
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFD--EIPDRNIVSWNALITGYNHNRMFRKVI 228

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-- 339
            +F EM         + + G+L         +CA +GAL  G W+  YI  N++ ++   
Sbjct: 229 DVFREMQIAGAKPVEVTMVGVL--------LACAHLGALNQGRWIDDYIDHNRLRLNVFV 280

Query: 340 -------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        ++ A  +F  +  KNVY W  +I+ YAM G  + A+  F  M     
Sbjct: 281 GTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKF 340

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           KPD+VTF+ +L AC H GLV+EG  + +     + ++P+++HYGCMVDLLGRAG L+E+ 
Sbjct: 341 KPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQ 400

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             I +M + PD  IW  LL ACR H N++L E A K L E +P N   +VLLAN+YA+  
Sbjct: 401 QLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQ 460

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
           R D +  +R  +    ++K  G S IE    V++F   +   P  EE+Y +L ++   L+
Sbjct: 461 RWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLK 520

Query: 567 QQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
             G                +E SL  H E+LA+AFGL+ +    T+RIV NLRIC DCH 
Sbjct: 521 LAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHG 580

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           F K+ S+VY R+I +RD  RFH F GG CSC+DYW
Sbjct: 581 FFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW 615



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 3/169 (1%)

Query: 121 QEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
           Q  F   +Y+ T  V +   C  + +  Q+FD++P+R+++SWN +I+ Y    M+R+ + 
Sbjct: 170 QMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVID 229

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           +  +M   G  P EVTMV ++ A   L  L  G+ +  +++ + ++++  +   L+DMY 
Sbjct: 230 VFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYA 289

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           KCG + EA+K+     +   +V  W  L+SGY  +   + A + F  M+
Sbjct: 290 KCGVVDEAEKIFKAMRVK--NVYTWNVLISGYAMNGRGESALQAFSRMI 336



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + E  ++F  +  ++V +WN +IS Y   G     L   S+M  E   PDEVT + 
Sbjct: 290 KCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLG 349

Query: 199 LISARTKLRDLEMGKNLHLFL-EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++ A      +  G+     + EE  ++        +VD+  + G + EAQ+L+    + 
Sbjct: 350 VLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSM- 408

Query: 258 EVDVVLWTTLVSG 270
           + D ++W  L+  
Sbjct: 409 QPDPIIWRELLGA 421


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/547 (33%), Positives = 287/547 (52%), Gaps = 47/547 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG--AEGVSPDE 193
           +  KCG+L +    F++L  ++ ++WN M++ Y   G  RE L L  +M   +    PD+
Sbjct: 75  MYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDK 134

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLL 251
            +    I A + L DLE G+ +H  L     ++   ++    L++MY KCG + EA+K+ 
Sbjct: 135 FSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVF 194

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF-- 309
                D  D V W  +++ Y +     +A  L+  M +          + +  +   F  
Sbjct: 195 DSIRHD-ADSVCWNAMIAAYAQHGRGKQALDLYRSMHD---------TTDLAPKQGTFVT 244

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKN 354
               CA + AL  G  +H  ++      +                ++ A D+F  +  K+
Sbjct: 245 VIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKD 304

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              W ++I++YA  GH+ +A+ L+ EM+  G KP +VTF+ LLSACSHGGLV +G D+  
Sbjct: 305 EISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFY 364

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
           +    + IKP + H+GC++DLLGR G L E+   + SMPI  +   W SLL AC+ H ++
Sbjct: 365 RMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDL 424

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           K    A   + +  P   G +VLL+NIYA AGR  D+ +IR  +   G+KK  G S IE 
Sbjct: 425 KRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEI 484

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHR 578
           G  VH+F SGD  +P  EEIY+ L ++   ++  G + +TS               + H 
Sbjct: 485 GDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHS 544

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LA+ +G +    K+ +RIV NLR+C DCH+  K  S++  R+IV+RD  RFH F+ G 
Sbjct: 545 EKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGS 604

Query: 639 CSCRDYW 645
           CSCRDYW
Sbjct: 605 CSCRDYW 611



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 113/287 (39%), Gaps = 55/287 (19%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           ID+   IH +   + L+ +  + T V       G L  A+    +        WN+++ N
Sbjct: 47  IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 106

Query: 114 QLINGYPQEVFAIYLYLVTR---------------------------------------- 133
             ++G  +E   ++  +  R                                        
Sbjct: 107 YKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKE 166

Query: 134 --------TVLLN---KCGKLKEVCQLFDKLP-NRDVISWNTMISCYTSMGMYREGLGLL 181
                   T LLN   KCG L+E  ++FD +  + D + WN MI+ Y   G  ++ L L 
Sbjct: 167 LHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLY 226

Query: 182 SKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             M     ++P + T V++I    +L  L+ G+ +H  +  +    +  + N LV MY K
Sbjct: 227 RSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGK 286

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           CG + EA  +    ++   D + W T++S Y      D+A  L+ EM
Sbjct: 287 CGCLDEALDVFHSMKLK--DEISWNTIISSYAYHGHSDQALLLYQEM 331


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 297/546 (54%), Gaps = 57/546 (10%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +V    LLN   KCG L+E  ++F+K+P RD ++W T+IS Y+      + L   ++M  
Sbjct: 95  IVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLR 154

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G SP+E T+ S+I A    R    G  LH F  +     +  + + L+D+Y + G + +
Sbjct: 155 FGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDD 214

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           AQ +     ++  + V W  L++G+ + +  ++A  LF  M+                + 
Sbjct: 215 AQLVFD--ALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF------------RP 260

Query: 307 AEFKYKS----CASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLF 347
           + F Y S    C+S G L  G WVH Y+ K+   +                +I  A  +F
Sbjct: 261 SHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIF 320

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             +++++V  W S++ AYA  G  ++A+  F EM   G +P++++F+++L+ACSH GL+D
Sbjct: 321 DRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLD 380

Query: 408 EGYDF--LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           EG+ +  L KK     I P+  HY  +VDLLGRAG L  +  FI  MPI P  +IW +LL
Sbjct: 381 EGWHYYELMKKD---GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            ACR H+N +L  +A +H+ E DP + G HV+L NIYA  GR +D +R+R K+++ G+KK
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
           +   S +E    +H F + D  +P  EEI     E+   +++ G                
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557

Query: 571 QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           +E +LQ H E++A+AF L++T   +TI I  N+R+CGDCH+ +K+ S+V  REI++RD  
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 630 RFHRFQ 635
           RFH F+
Sbjct: 618 RFHHFK 623



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 31/291 (10%)

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +L+   T  + L  G+ +H  + +S  +    + N L++MY KCG + EA+K+  +  + 
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEK--MP 122

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           + D V WTTL+SGY + +   +A   F++M+          +S ++   A  +   C   
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCC--- 179

Query: 318 GALYHGIWV------HVYIKKNQISI-------DNIELAYDLFSEISEKNVYLWTSVIAA 364
           G   HG  V      +V++    + +       D+ +L +D    +  +N   W ++IA 
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFD---ALESRNDVSWNALIAG 236

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           +A     +KA++LF  M   G +P   ++ +L  ACS  G +++G     K    Y IK 
Sbjct: 237 HARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-----KWVHAYMIKS 291

Query: 425 --KMQHYG--CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
             K+  +    ++D+  ++G + ++      +    DV  W+SLL A   H
Sbjct: 292 GEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH 341


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 198/690 (28%), Positives = 325/690 (47%), Gaps = 93/690 (13%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P       V  +C+   + E   ++H  ++ T   +D   +  + +     GD+  A  +
Sbjct: 203 PNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATV 262

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN----------------- 138
             +    ++  WN+ I   + +G+      + L + +  ++ N                 
Sbjct: 263 FEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAF 322

Query: 139 ------------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
                                         K G L +  ++FD +P RD+I WN +IS  
Sbjct: 323 NLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGC 382

Query: 169 TSMGMYREGLGLLSKMGAEGVSPD--EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
           +  G + E L L  +M  EG+  D    T+ S++ +      +   + +H   E+  +  
Sbjct: 383 SHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLS 442

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
              ++N L+D Y+KCG++  A K+      D  D++  TT+++   + +  ++A +LF +
Sbjct: 443 DSHVINGLIDSYWKCGQLDYAIKVFKESRSD--DIISSTTMMTALSQCDHGEDAIKLFVQ 500

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------- 338
           M+ + L   + ++S +LN        +C S+ A   G  VH ++ K Q + D        
Sbjct: 501 MLRKGLEPDSFVLSSLLN--------ACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALV 552

Query: 339 -------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                  +IE A   FS + E+ +  W+++I   A  GH ++A+DLF  M + G  P+ +
Sbjct: 553 YAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHI 612

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           T  ++LSAC+H GLVD+   +       + I    +HY CM+D+LGRAG LE++   + +
Sbjct: 613 TLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNN 672

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           MP   + ++W +LL A R H++ +L   A + L   +P   G HVLLAN YA AG  D+M
Sbjct: 673 MPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEM 732

Query: 512 SRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE----------- 560
           +++R  ++D  +KK+   S +E    VH F  GD  +P + +IY  L E           
Sbjct: 733 AKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYV 792

Query: 561 --IEMTLQQQGLQETSL---QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
             +E+ L      E  L    H ERLAVAF LIST     IR+  NLRIC DCH   K  
Sbjct: 793 PNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYI 852

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S++ +REI+IRD  RFH F  G CSC DYW
Sbjct: 853 SKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 177/379 (46%), Gaps = 46/379 (12%)

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           ++++ L+ G+   +  +Y          ++C        +FD++P+   +SW+++++ Y+
Sbjct: 30  LLKSGLLAGFSNHLLTLY----------SRCRLPSAARAVFDEIPDPCHVSWSSLVTAYS 79

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
           + GM R+ L     M   GV  +E  +  ++       D+  G  +H     + +     
Sbjct: 80  NNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAP---DVRFGAQVHALAVATRLVHDVF 136

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRY--EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           + N LV +Y   G + EA+++   Y     E + V W T++S YVK+++  +A  +F EM
Sbjct: 137 VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREM 196

Query: 288 V---ER-NLISWTLMISGML-NQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS------ 336
           V   ER N   ++ +++    ++D E         G   HG  V    +K+  +      
Sbjct: 197 VWSGERPNEFGFSCVVNACTGSRDLE--------AGRQVHGAVVRTGYEKDVFTANALVD 248

Query: 337 ----IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
               + +IE+A  +F ++   +V  W + I+     GH  +A++L L+M+ +G  P+  T
Sbjct: 249 MYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFT 308

Query: 393 FIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
             ++L AC+  G  + G   + F+ K    ++   +    G +VD+  + G L+++    
Sbjct: 309 LSSVLKACAGAGAFNLGRQIHGFMVKAVADFD---EFVAVG-LVDMYAKHGFLDDARKVF 364

Query: 450 TSMPIPPDVSIWSSLLRAC 468
             MP   D+ +W++L+  C
Sbjct: 365 DFMP-RRDLILWNALISGC 382



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 121/518 (23%), Positives = 205/518 (39%), Gaps = 84/518 (16%)

Query: 141 GKLKEVCQLFDKL----PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           G + E  ++FD+       R+ +SWNTMIS Y       + +G+  +M   G  P+E   
Sbjct: 149 GMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGF 208

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
             +++A T  RDLE G+ +H  +  +  +      N LVDMY K G I  A  +  +  +
Sbjct: 209 SCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEK--M 266

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
              DVV W   +SG V       A  L  +M    L+     +S +L        K+CA 
Sbjct: 267 PAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVL--------KACAG 318

Query: 317 IGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSV 361
            GA   G  +H ++ K     D                ++ A  +F  +  +++ LW ++
Sbjct: 319 AGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNAL 378

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSAC------------------- 400
           I+  +  G   + + LF  M + G   D  + T  ++L +                    
Sbjct: 379 ISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKI 438

Query: 401 -----SH--GGLVDEGY-----DF---LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
                SH   GL+D  +     D+   + K+SR  +I         M+  L +  H E++
Sbjct: 439 GLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTT----MMTALSQCDHGEDA 494

Query: 446 ANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHVLLANI 501
                 M    + PD  + SSLL AC      +  +    HL +    +D  A   L   
Sbjct: 495 IKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYA 554

Query: 502 YAKAGRLDDMSRIRMKLRDMGL---KKQLGYSLIEQGGFVHKFTSGDIFNPHSEE----I 554
           YAK G ++D       L + G+      +G  L + G   H   + D+F+   +E     
Sbjct: 555 YAKCGSIEDADMAFSGLPERGIVSWSAMIG-GLAQHG---HGKRALDLFHRMLDEGVAPN 610

Query: 555 YLMLNEIEMTLQQQGLQETSLQHRERLAVAFGLISTSE 592
           ++ L  +       GL + + ++ E +   FG+  T E
Sbjct: 611 HITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEE 648



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 36/284 (12%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           R L  G +LH  L +S +    S  N+L+ +Y +C     A+ +    EI +   V W++
Sbjct: 18  RSLFAGAHLHSHLLKSGLLAGFS--NHLLTLYSRCRLPSAARAVFD--EIPDPCHVSWSS 73

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYH 322
           LV+ Y  +    +A   F  M  R +      +  +L    + ++     + A    L H
Sbjct: 74  LVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAVATRLVH 133

Query: 323 GIWVHVYIKKNQISIDNIELAYDLFSEI----SEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            ++V   +         ++ A  +F E      E+N   W ++I+AY     +  AI +F
Sbjct: 134 DVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVF 193

Query: 379 LEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            EM  +G +P++  F  +++AC+           HG +V  GY+       V+       
Sbjct: 194 REMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYE-----KDVFTAN---- 244

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
               +VD+  + G +E +A     MP   DV  W++ +  C  H
Sbjct: 245 ---ALVDMYSKLGDIEMAATVFEKMP-AADVVSWNAFISGCVTH 284


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 191/560 (34%), Positives = 302/560 (53%), Gaps = 66/560 (11%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLIS 201
           L +   LFD++P  D +S+NT++SC+ + G  R    L + M A   +     TM+S +S
Sbjct: 67  LADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLS 126

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSL-LNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
                R   +G+   +FL    M    S+  N +V  +   G +  A++       D+ +
Sbjct: 127 -----RSGAVGEARAVFL---AMPARNSISWNAMVSCFAHAGDMCAAEECF-EDAPDKEN 177

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKYKS--- 313
            VLWT +VSGY+ S   ++A + F+ M  R+L+SW  +++G +     +DA + +K+   
Sbjct: 178 AVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVR 237

Query: 314 -----------------CASIGALYHGIWVHVYIKKNQIS---------------IDNIE 341
                            C+++ AL  G  VH +  K  +S                 +++
Sbjct: 238 DADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLD 297

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  LFSE+  ++V  W ++I+ YA  G  ++AI+LF +M+  G +P+ +TF+A+L+AC 
Sbjct: 298 GACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACI 357

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H G+ D G     +   VY I+ ++ HY CMVDLL RAG LE + + I SMP  P  S +
Sbjct: 358 HTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAY 417

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            +LL A R ++N++ AE A   L E +P N GA+V LANIYA A +  D+SR+R  ++D 
Sbjct: 418 GTLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDN 477

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQET 573
            + K  GYS +E  G +H F S D  +P    I+  L ++E  ++  G        L + 
Sbjct: 478 AVVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDV 537

Query: 574 S--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
                    ++H E+LA+AFGL+ST+   T+RI  NLR+CGDCH+  K+ S++ +REI++
Sbjct: 538 DESLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIIL 597

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F+ G CSC DYW
Sbjct: 598 RDTTRFHHFRSGHCSCGDYW 617



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 29/224 (12%)

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145
            GD+  A++      + E    N+++   +++GY                     G +++
Sbjct: 159 AGDMCAAEECFEDAPDKE----NAVLWTAMVSGYMDS------------------GHVEK 196

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISART 204
             Q F+ +P R ++SWN +++ Y       + L +   M  +  V P+E T+ S++   +
Sbjct: 197 AMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCS 256

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
            L  L  G+ +H +  +  +    +    LV MY KCG +  A KL     I   DV+ W
Sbjct: 257 NLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIR--DVIAW 314

Query: 265 TTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLN 304
             ++SGY    +  EA  LF++M    VE N I++  +++  ++
Sbjct: 315 NAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIH 358



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L   C+LF ++  RDVI+WN MIS Y   G  RE + L  KM ++GV P+ +T V+
Sbjct: 292 KCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVA 351

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLL 251
           +++A       + G      ++E    I   + +Y  +VD+  + G +  A  L+
Sbjct: 352 VLTACIHTGMCDFGMQCFERMQE-VYGIEARVDHYSCMVDLLCRAGSLERAVSLI 405


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/543 (33%), Positives = 289/543 (53%), Gaps = 78/543 (14%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREG-LGLLSKMGAEGVSPDEVTMVSLISARTKL 206
           ++F+++P  DVISW  +IS Y   G+     + L  +M  E + P+ +T  S++ +   +
Sbjct: 313 KVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASI 372

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            D + G+ +H  + +S    + ++ N LV MY + G +                      
Sbjct: 373 SDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCM---------------------- 410

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTL-------------MISGMLNQDAEFKYKS 313
                      +EARR+F+++ ER++I                 M  G+ +        +
Sbjct: 411 -----------EEARRVFNQLYERSMIPCITEGRDFPLDHRIVRMDVGISSSTFASLISA 459

Query: 314 CASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLW 358
            AS+G L  G  +H    K     D                +E A   F+E+ ++NV  W
Sbjct: 460 AASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISW 519

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           TS+I+  A  G+A++A+ LF +M  TG KP+ VT+IA+LSACSH GLV EG ++     R
Sbjct: 520 TSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQR 579

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            + + P+M+HY CMVDLL R+G ++E+  FI  MP+  D  +W +LL ACR H N+++ E
Sbjct: 580 DHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGE 639

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
              K++ E +P +   +VLL+N+YA AG  D+++RIR  +RD  L K+ G S +E     
Sbjct: 640 ITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTT 699

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLA 582
           H+F +GD  +P +++IY  L+ +   ++  G + +TS               LQH E++A
Sbjct: 700 HEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIA 759

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           VAFGLI+TS    IRI  NLR+C DCHS +K  S+   REI++RD+ RFHR + G+CSC 
Sbjct: 760 VAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCG 819

Query: 643 DYW 645
           +YW
Sbjct: 820 EYW 822



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 170/416 (40%), Gaps = 57/416 (13%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +L + G L    ++FD L  + V+ W  +IS Y       E + L      +G  PD  T
Sbjct: 197 MLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYT 256

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY- 254
           M S+ISA T+L  + +G  LH       +     +   LVDMY K   IG+A     +  
Sbjct: 257 MSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAK-SNIGQAMDYANKVF 315

Query: 255 -EIDEVDVVLWTTLVSGYVKSN-ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
             + + DV+ WT L+SGYV+S  + ++   LF EM+  ++    +  S +L        K
Sbjct: 316 ERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSIL--------K 367

Query: 313 SCASIGALYHGIWVHVY-IKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           SCASI     G  VH + IK NQ S   +                   ++++ YA +G  
Sbjct: 368 SCASISDHDSGRQVHAHVIKSNQASAHTVG-----------------NALVSMYAESGCM 410

Query: 372 QKAIDLFLEMEETGTKP---------------------DQVTFIALLSACSHGGLVDEGY 410
           ++A  +F ++ E    P                        TF +L+SA +  G++ +G 
Sbjct: 411 EEARRVFNQLYERSMIPCITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQ 470

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
             L   S              +V +  R G+LE++      +    +V  W+S++     
Sbjct: 471 Q-LHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELK-DRNVISWTSMISGLAK 528

Query: 471 HQNVKLAEHAFKH--LTETDPLNDGAHVLLANIYAKAGRLDDMSR-IRMKLRDMGL 523
           H   + A   F    LT   P ND  ++ + +  +  G + +     R   RD GL
Sbjct: 529 HGYAERALSLFHDMILTGVKP-NDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGL 583



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 34/290 (11%)

Query: 135 VLLNKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
            L ++CG +     +FD +   RD++SW  M SC    G  R  L L+ +M   G+ P+ 
Sbjct: 92  TLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNA 151

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG---SLLNYLVDMYFKCGKIGEAQKL 250
            T+ +   A     +L       +      M + G   ++ + L+DM  + G +  A+K+
Sbjct: 152 YTLCAAAHACFP-HELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKV 210

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                + E  VV+WT L+S YV+    +EA  LF + +E         +S M++      
Sbjct: 211 FD--GLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMIS------ 262

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISID--------------NIELAYD----LFSEISE 352
             +C  +G++  G+ +H    +  ++ D              NI  A D    +F  + +
Sbjct: 263 --ACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPK 320

Query: 353 KNVYLWTSVIAAYAMAG-HAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            +V  WT++I+ Y  +G    K + LF EM     KP+ +T+ ++L +C+
Sbjct: 321 NDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCA 370



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 120/270 (44%), Gaps = 14/270 (5%)

Query: 208 DLEMGKNLHL-FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           DL +G+ LH   L    +     + N L+ +Y +CG +  A+ +         D+V WT 
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMR-GLRDIVSWTA 121

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLI--SWTLMISGMLNQDAEFKYKSCASIGALYH-- 322
           + S   ++     +  L  EM+E  L+  ++TL  +       E        +  L H  
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKM 181

Query: 323 GIW-VHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           G+W   V +    I +     ++  A  +F  + EK V +WT +I+ Y     A++A++L
Sbjct: 182 GLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEL 241

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           FL+  E G +PD+ T  +++SAC+  G V  G    S   R+          G +VD+  
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCG-LVDMYA 300

Query: 438 RA--GHLEESANFITSMPIPPDVSIWSSLL 465
           ++  G   + AN +       DV  W++L+
Sbjct: 301 KSNIGQAMDYANKVFERMPKNDVISWTALI 330



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 85/160 (53%), Gaps = 9/160 (5%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG L++ C+ F++L +R+VISW +MIS     G     L L   M   GV P++VT
Sbjct: 494 MYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVT 553

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            ++++SA + +  +  GK     ++     I   + +Y  +VD+  + G + EA + +  
Sbjct: 554 YIAVLSACSHVGLVREGKEYFRSMQRDHGLIP-RMEHYACMVDLLARSGIVKEALEFINE 612

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
             + + D ++W TL+ G  +S++  E      E+  +N++
Sbjct: 613 MPL-KADALVWKTLL-GACRSHDNIE----VGEITAKNVV 646


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 191/592 (32%), Positives = 298/592 (50%), Gaps = 66/592 (11%)

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           +I+  L    P     +  Y  +R         L +   LFD+ P RD+  ++++++  +
Sbjct: 29  LIKEGLAQHPPAPALLVSAYAKSRL--------LPDTRLLFDETPRRDLHLYSSLLAAVS 80

Query: 170 SMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
                   L LL +M  A+ + PD   + S+ SA  +LR L +GK LH     S      
Sbjct: 81  HSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDD 140

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            + + L+DMY KCG   +A+K+     I   + V+WT L+SGYV +   DEA  LF  M 
Sbjct: 141 VVKSSLIDMYCKCGVPDDARKVFD--SIVAKNSVMWTALISGYVLNGRSDEALELFRSMP 198

Query: 289 ERNLISWTLMISGMLNQ--------------------DAEFKYKSCAS---------IGA 319
            R L +WT +ISG +                      D  F   S            +G 
Sbjct: 199 GRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGR 258

Query: 320 LYHGIWVHVYIKKNQI----------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
             H + + +    + I             +I  A ++F EI+ +++  WT+++   A  G
Sbjct: 259 QLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHG 318

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
            A++A  L+  M   G KP++VTF+ L+ ACSH GLV +G          Y I P++QHY
Sbjct: 319 RAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHY 378

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
            C +DLL R+GHL E+   IT+MP  PD + W+SLL AC+ + N +++     +L E  P
Sbjct: 379 TCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRP 438

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
                +VLL+N+YA  G+ D +  +R  + DM ++K+ GYS IE G     F +G++   
Sbjct: 439 KYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPID 498

Query: 550 HSEEIYLMLNEIEMTLQQQG-----------LQETSLQHR-----ERLAVAFGLISTSEK 593
             EEI   L E+   ++Q+G           L+E   +H      ERLAVAFG++ +   
Sbjct: 499 LREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLG 558

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + IR+V NLR+C DCH+ MK  S+++ R+I++RD  RFH F+GG+CSC ++W
Sbjct: 559 SVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 149/348 (42%), Gaps = 60/348 (17%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           +++H H + +    D  + + + +     G    A+++        I   NS++   LI+
Sbjct: 125 KQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDS-----IVAKNSVMWTALIS 179

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
           GY                +LN  G+  E  +LF  +P R + +W  +IS +   G     
Sbjct: 180 GY----------------VLN--GRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSA 221

Query: 178 LGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMGKNLHLFLEESTMKI--SGSLL--N 232
           + L   M  +GVS D+   + S I     L    +G+ LH      TM++  S S++  N
Sbjct: 222 VKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSL----TMRLGFSSSMIVGN 277

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            +VDMY KC  I  A+++    EI   D++ WTT++ G  +    +EA  L+D MV    
Sbjct: 278 AVVDMYSKCSDIHSAREVF--EEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMV---- 331

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352
                 ++G+   +  F       +G +Y      +  K  Q+  D+++  Y +   +  
Sbjct: 332 ------LAGVKPNEVTF-------VGLIYACSHAGLVQKGRQL-FDSMKGEYGINPRLQH 377

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
              YL        + +GH  +A +L   M      PD+ T+ +LLSAC
Sbjct: 378 YTCYL-----DLLSRSGHLAEAEELITTMPYV---PDEATWASLLSAC 417


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 286/541 (52%), Gaps = 40/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG + + C++F+++P +D +SW  MI  Y+ +G + E L    KM  E V+ D+  
Sbjct: 85  MYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHV 144

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S + A   L+  + G+++H  + +   +    + N L DMY K G +  A  + G  +
Sbjct: 145 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG-ID 203

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
            +  +VV +T L+ GYV++ + ++   +F E+  + +       S ++        K+CA
Sbjct: 204 SECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLI--------KACA 255

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
           +  AL  G  +H  + K     D                +E A   F EI +     W S
Sbjct: 256 NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNS 315

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +++ +   G  + AI +F  M + G KP+ +TFI+LL+ CSH GLV+EG D+     + Y
Sbjct: 316 LVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTY 375

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            + P  +HY C++DLLGRAG L+E+  FI  MP  P+   W S L ACR H + ++ + A
Sbjct: 376 GVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLA 435

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L + +P N GA VLL+NIYA   + +D+  +RM++RD  +KK  GYS ++ G   H 
Sbjct: 436 AEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHV 495

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------------LQETSL-QHRERLAVA 584
           F + D  +P    IY  L+ +   ++  G               ++E  L +H ER+AVA
Sbjct: 496 FGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVA 555

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F LIS      I +  NLR+C DCHS +K  S+V  R+I++RDN RFH F  G CSC DY
Sbjct: 556 FALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDY 615

Query: 645 W 645
           W
Sbjct: 616 W 616



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 160/351 (45%), Gaps = 30/351 (8%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +P R+++SW  MIS  +    + E +     M   G  P +    S I A   L  +EMG
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           K +H    +  +     + + L DMY KCG + +A K+    E+   D V WT ++ GY 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVF--EEMPCKDEVSWTAMIDGYS 118

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
           K  E +EA   F +M++  +     ++   L         +C ++ A   G  VH  + K
Sbjct: 119 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG--------ACGALKACKFGRSVHSSVVK 170

Query: 333 NQISID---------------NIELAYDLFSEISE-KNVYLWTSVIAAYAMAGHAQKAID 376
                D               ++E A ++F   SE +NV  +T +I  Y      +K + 
Sbjct: 171 LGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLS 230

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV-YNIKPKMQHYGCMVDL 435
           +F+E+   G +P++ TF +L+ AC++   +++G    ++  ++ ++  P +     +VD+
Sbjct: 231 VFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--LVDM 288

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
            G+ G LE++      +  P +++ W+SL+     H   K A   F+ + +
Sbjct: 289 YGKCGLLEQAIQAFDEIGDPTEIA-WNSLVSVFGQHGLGKDAIKIFERMVD 338


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 296/569 (52%), Gaps = 66/569 (11%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTM 196
            KCG      Q+FD++P+RD I+W ++++      +  + L + S +G+   + PD+   
Sbjct: 49  GKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVF 108

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            +L+ A   L  ++ G+ +H     S       + + LVDMY KCG +  A+ +     +
Sbjct: 109 SALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRV 168

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS--- 313
              + + WT +VSGY KS  ++EA  LF  +  +NL SWT +ISG +      +  S   
Sbjct: 169 K--NTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFT 226

Query: 314 ---------------------CASIGALYHGIWVH-----------VYIKKNQISI---- 337
                                CA++ A   G  VH           V+I    I +    
Sbjct: 227 EMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKC 286

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
            ++  A D+FS +  ++V  WTS+I   A  G A+KA+ L+ +M   G KP++VTF+ L+
Sbjct: 287 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 346

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
            ACSH G V++G +     ++ Y I+P +QHY C++DLLGR+G L+E+ N I +MP PPD
Sbjct: 347 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD 406

Query: 458 VSIWSSLLRAC----RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
              W++LL AC    R    +++A+H        DP     ++LL+NIYA A     +S 
Sbjct: 407 EPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDP---STYILLSNIYASASLWGKVSE 463

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI--EMTLQQQGLQ 571
            R KL +M ++K  G+S +E       F +G+  +P  E+I+ +L ++  EM ++   + 
Sbjct: 464 ARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVP 523

Query: 572 ETS---------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
           +TS                 H ER AVA+GL+     T IRIV NLR+CGDCH  +K  S
Sbjct: 524 DTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHIS 583

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++  REI++RD  R+H F+GG+CSC D+W
Sbjct: 584 EITEREIIVRDATRYHHFKGGKCSCNDFW 612



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 32/191 (16%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           R L   K LH  + +  +     L N LV++Y KCG    A ++    E+   D + W +
Sbjct: 17  RTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFD--EMPHRDHIAWAS 74

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYH 322
           +++   ++N           +  + L  ++ + S    +  +F +    K+CA++G++ H
Sbjct: 75  VLTALNQAN-----------LSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 123

Query: 323 GIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  VH +   ++ + D +                 A  +F  I  KN   WT++++ YA 
Sbjct: 124 GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 183

Query: 368 AGHAQKAIDLF 378
           +G  ++A++LF
Sbjct: 184 SGRKEEALELF 194


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/538 (33%), Positives = 290/538 (53%), Gaps = 42/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L    ++FD    +D ++WN++I+ YT  G Y+EGL     M  E   PD VT V 
Sbjct: 369 KCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVL 427

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+S  ++L D+  G+ +H  + +   +    + N L+D+Y KCG++ +  K+     +  
Sbjct: 428 LLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSY--MSA 485

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D++ W T+++  V  ++     ++ +EM    L+     + G+L          C+ + 
Sbjct: 486 HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM--------CSLLA 537

Query: 319 ALYHGIWVHVYIKKN----QISIDN-----------IELAYDLFSEISEKNVYLWTSVIA 363
               G  +H YI K+     + I N           +E    +F  + EK+V  WT++I+
Sbjct: 538 VRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALIS 597

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           A+ M G  +KA+  F +ME +G  PD V FIA + ACSH G+V EG  F  +    YN++
Sbjct: 598 AFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLE 657

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P+M+HY C+VDLL R+G L ++  FI SMP+ PD S+W +LL ACR   N  +A+   K 
Sbjct: 658 PRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKK 717

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E +  + G +VL++NIYA  G+ D +  +R  ++  GLKK+ G S IE    V+ F +
Sbjct: 718 ILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRT 777

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGL 587
           GD      +++  +L  +   + ++G                 ++    H ERLA+AFGL
Sbjct: 778 GDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGL 837

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++T   + + ++ NLR+CGDCH+  K  +++  REI++RD  RFHRF+ G CSC D+W
Sbjct: 838 LNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 195/423 (46%), Gaps = 56/423 (13%)

Query: 26  PKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF--- 82
           P++R          +SL VI    S   I ++ ++   + + ++ R    +  V+ +   
Sbjct: 36  PQLRTVHSLIITSGLSLSVIF---SGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSI 92

Query: 83  -------LVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQ----------LINGYPQEV-F 124
                   +FT  LGY  ++  +  +P+   + S+I +           +++ +  E+ F
Sbjct: 93  IRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGF 152

Query: 125 AIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
              LY+    + + ++   L     +F+++ NRD +SWN++IS Y S G + + L +  K
Sbjct: 153 ESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHK 212

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL--NYLVDMYFKC 241
               G+ PD  TM S++ A   L  ++ G  +H  +E+  + I+G ++  N L+ MYFK 
Sbjct: 213 FRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEK--IGIAGDVIIGNGLLSMYFKF 270

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
            ++ EA+++  +  +   D V W T++ GY +    + + +LF +M++   +   L I+ 
Sbjct: 271 ERLREARRVFSKMAVK--DSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITS 327

Query: 302 MLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL---------------AYDL 346
            +        ++C   G L  G +VH Y+  +    D +                 A ++
Sbjct: 328 TI--------RACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEV 379

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F     K+   W S+I  Y  +G+ ++ ++ F +M +   KPD VTF+ LLS  S    +
Sbjct: 380 FDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADI 438

Query: 407 DEG 409
           ++G
Sbjct: 439 NQG 441



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 176/397 (44%), Gaps = 30/397 (7%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P  +V  WN++I   T  G++ + LG  ++M  + + PD  T  S+I++  ++ DLE+G 
Sbjct: 82  PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGC 141

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +H    E   +    + N L+DMY +   +  A+ +    E+   D V W +L+SGY  
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF--EEMSNRDSVSWNSLISGYCS 199

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
           +   ++A  ++ +     ++     +S +L         +C S+ A+  G+ VH  I+K 
Sbjct: 200 NGFWEDALDMYHKFRMTGMVPDCFTMSSVL--------LACGSLMAVKEGVAVHGVIEKI 251

Query: 334 QISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            I+ D I                 A  +FS+++ K+   W ++I  YA  G  + ++ LF
Sbjct: 252 GIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF 311

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
           ++M + G  PD ++  + + AC   G +  G  F+ K       +        ++D+  +
Sbjct: 312 MDMID-GFVPDMLSITSTIRACGQSGDLQVG-KFVHKYLIGSGFECDTVACNILIDMYAK 369

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
            G L  +     +      V+ W+SL+         K    +FK +      +    VLL
Sbjct: 370 CGDLLAAQEVFDTTKCKDSVT-WNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLL 428

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQL--GYSLIE 533
            +I+++   ++    I   +   G + +L  G SL++
Sbjct: 429 LSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLD 465



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 169/415 (40%), Gaps = 77/415 (18%)

Query: 39  PVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P  L +    R+C    + +    +H +LI +    D      + +     GDL  AQ++
Sbjct: 320 PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEV 379

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQE-----------------VFAIYLYLVTRTVLLN 138
                  +   WNS+I     +GY +E                  F + L + ++   +N
Sbjct: 380 FDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADIN 439

Query: 139 -----------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
                                        KCG++ ++ ++F  +   D+ISWNT+I+   
Sbjct: 440 QGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSV 499

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
                  G  ++++M  EG+ PDE T++ ++   + L     GK +H ++ +S  + +  
Sbjct: 500 HFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVP 559

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           + N L++MY KCG +    K+  +Y + E DVV WT L+S +    E  +A + F +M  
Sbjct: 560 IGNALIEMYSKCGSLENCIKVF-KY-MKEKDVVTWTALISAFGMYGEGKKALKAFQDM-- 615

Query: 290 RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349
                    +SG+L     F     A I A  H   V    K+     D ++  Y+L   
Sbjct: 616 --------ELSGVLPDSVAF----IAFIFACSHSGMV----KEGLRFFDRMKTDYNL--- 656

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
             E  +  +  V+   A +G   +A +  L M     KPD   + ALLSAC   G
Sbjct: 657 --EPRMEHYACVVDLLARSGLLAQAEEFILSMP---MKPDASLWGALLSACRARG 706



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 35/203 (17%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           I + G E  + I N++IE                       + +KCG L+   ++F  + 
Sbjct: 549 IFKSGFESNVPIGNALIE-----------------------MYSKCGSLENCIKVFKYMK 585

Query: 155 NRDVISWNTMISCYTSMGMYREG---LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
            +DV++W  +IS +   GMY EG   L     M   GV PD V  ++ I A +    ++ 
Sbjct: 586 EKDVVTWTALISAF---GMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKE 642

Query: 212 GKNLHLFLEEST-MKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           G  L  F    T   +   + +Y  +VD+  + G + +A++ +    + + D  LW  L+
Sbjct: 643 G--LRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPM-KPDASLWGALL 699

Query: 269 SGYVKSNERDEARRLFDEMVERN 291
           S        + A+R+  +++E N
Sbjct: 700 SACRARGNTNIAQRVSKKILELN 722


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/543 (33%), Positives = 286/543 (52%), Gaps = 42/543 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +K G   E   +FD++P+R++ +WN  +S     G   + +    K       P+ +T
Sbjct: 153 MYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAIT 212

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             + ++A   +  LE+G+ LH F+  S  +   S+ N L+D Y KCG I  ++ +  R  
Sbjct: 213 FCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIG 272

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
               +VV W +L++  V+++E + A  +F +   + +     MIS +L+        +CA
Sbjct: 273 SGRRNVVSWCSLLAALVQNHEEERACMVFLQ-ARKEVEPTDFMISSVLS--------ACA 323

Query: 316 SIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTS 360
            +G L  G  VH    K  +                  +IE A  +F E+ E+N+  W +
Sbjct: 324 ELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNA 383

Query: 361 VIAAYAMAGHAQKAIDLFLEMEE--TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           +I  YA  G    A+ LF EM     G     VT +++LSACS  G V+ G         
Sbjct: 384 MIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRG 443

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            Y I+P  +HY C+VDLLGR+G ++ +  FI  MPI P +S+W +LL AC+ H   KL +
Sbjct: 444 RYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLGK 503

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A + L E DP + G HV+ +N+ A AGR ++ + +R ++RD+G+KK +GYS +     V
Sbjct: 504 IAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRV 563

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ---------------HRERLA 582
           H F + D F+  + EI  ML ++   +++ G + + +L                H E++A
Sbjct: 564 HVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKIA 623

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           +AFGLI+      IRI  NLRIC DCHS +K  S++  REI++RDN RFHRF+ G CSC+
Sbjct: 624 LAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSCK 683

Query: 643 DYW 645
           DYW
Sbjct: 684 DYW 686



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 109/491 (22%), Positives = 182/491 (37%), Gaps = 104/491 (21%)

Query: 68  NLMRDPQISTQVFEFLVFTGD--LGYA--QQIIRQGDEPEIKIWNSIIENQLINGYPQEV 123
           N+ R P +     E  V +    LG A    I+R  D P      S + N L+N Y +  
Sbjct: 2   NVPRPPNLLGSFLESAVLSRSSLLGRAVHAHILRTHDTP----LPSFLCNHLVNMYSKL- 56

Query: 124 FAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLS 182
                              L    QL   L N R V++W ++IS       +   L   S
Sbjct: 57  ------------------DLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFS 98

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
            M  E V P++ T   +  A   L     GK LH                    +  K G
Sbjct: 99  NMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHA-------------------LALKGG 139

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
            I              +DV +  +    Y K+  R EAR +FDEM  RNL +W   +S  
Sbjct: 140 NI--------------LDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNA 185

Query: 303 ------LNQDAEFK-----------------YKSCASIGALYHGIWVHVYIKKNQISID- 338
                 L+  A FK                   +CA I +L  G  +H +I +++   D 
Sbjct: 186 VQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDV 245

Query: 339 --------------NIELAYDLFSEI--SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
                         +I  +  +FS I    +NV  W S++AA       ++A  +FL+  
Sbjct: 246 SVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQAR 305

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
           +   +P      ++LSAC+  G ++ G    +   +   ++  +     +VDL G+ G +
Sbjct: 306 KE-VEPTDFMISSVLSACAELGGLELGRSVHALALKAC-VEENIFVGSALVDLYGKCGSI 363

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           E +      MP   ++  W++++       +V +A   F+ +T        ++V L ++ 
Sbjct: 364 EYAEQVFREMP-ERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVL 422

Query: 503 AKAGRLDDMSR 513
           +   R   + R
Sbjct: 423 SACSRAGAVER 433


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 189/575 (32%), Positives = 294/575 (51%), Gaps = 44/575 (7%)

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISW 161
           PE   W   +  Q +N    +   +   L+    +   CG ++   ++FD +  RDV+SW
Sbjct: 272 PEALAWGKAVHAQCMNAGLVDDIRVATSLIR---MYTTCGSIEGARRVFDNMKVRDVVSW 328

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
             MI  Y   G   +  GL + M  EG+ PD +T + +++A     +L   + +H  ++ 
Sbjct: 329 TVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDI 388

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           +       +   LV MY KCG I +A+++     +   DVV W+ ++  YV++    EA 
Sbjct: 389 AGFGTDLLVSTALVHMYAKCGAIKDARQVFD--AMPRRDVVSWSAMIGAYVENGYGTEAF 446

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK--------- 332
             F  M   N+    +    +LN        +C  +GAL  G+ ++    K         
Sbjct: 447 ETFHLMKRSNIEPDGVTYINLLN--------ACGHLGALDVGMEIYTQAIKADLVSHVPL 498

Query: 333 -NQISIDN-----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
            N + I N     +E A  +F  +  ++V  W ++I  Y++ G+A++A+ LF  M +   
Sbjct: 499 GNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERF 558

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           +P+ VTF+ +LSACS  G VDEG  F +       I P ++ YGCMVDLLGRAG L+E+ 
Sbjct: 559 RPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAE 618

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             I SMP+ P  SIWSSLL ACR H N+ +AE A +     DP +   +V L+++YA AG
Sbjct: 619 LLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAG 678

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
             ++++++R  +   G++K+ G + IE  G VH F   D  +P   EIY  L  +   ++
Sbjct: 679 MWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIK 738

Query: 567 QQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
           ++G                 +E    H E+LA+A+G++S    T IRI  NLR+C DCHS
Sbjct: 739 REGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHS 798

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             K  S+V  REI+ RD  RFH F+ G CSC DYW
Sbjct: 799 ASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 167/340 (49%), Gaps = 13/340 (3%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L + CG + E  Q+FD + N+ V++WN +I+ Y  +G  +E   L  +M  EG+ P  +T
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            +S++ A +    L  GK +H  +  +       +   LV MY K G + +A+++     
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH 220

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA---- 307
           I   DV  +  +V GY KS + ++A  LF  M    ++ N IS+  ++ G    +A    
Sbjct: 221 IR--DVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWG 278

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           +  +  C + G L   I V   + +   +  +IE A  +F  +  ++V  WT +I  YA 
Sbjct: 279 KAVHAQCMNAG-LVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAE 337

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G+ + A  LF  M+E G +PD++T++ +++AC+    ++   +  S+   +      + 
Sbjct: 338 NGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVD-IAGFGTDLL 396

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
               +V +  + G ++++     +MP   DV  WS+++ A
Sbjct: 397 VSTALVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGA 435



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 173/396 (43%), Gaps = 67/396 (16%)

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           +L ++G  G   D  T V L    T+LRD  +GK +   + +   +++   LN L+ +Y 
Sbjct: 44  VLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYS 103

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
            CG + EA+++     ++   VV W  L++GY +     EA  LF +MV+  L    +  
Sbjct: 104 ICGNVTEARQIFD--SVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITF 161

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAY 344
             +L+        +C+S   L  G  VH  +       D               +++ A 
Sbjct: 162 LSVLD--------ACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDAR 213

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL------- 397
            +F  +  ++V  +  ++  YA +G  +KA +LF  M++ G KP++++F+++L       
Sbjct: 214 QVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPE 273

Query: 398 ---------SACSHGGLVDE------------GYDFLSKKSRVY-NIKPK-MQHYGCMVD 434
                    + C + GLVD+                +    RV+ N+K + +  +  M++
Sbjct: 274 ALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIE 333

Query: 435 LLGRAGHLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
                G++E++     +M    I PD   +  ++ AC    N+    HA +  ++ D   
Sbjct: 334 GYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLN---HAREIHSQVDIAG 390

Query: 492 DGAHVL----LANIYAKAGRLDDMSRI--RMKLRDM 521
            G  +L    L ++YAK G + D  ++   M  RD+
Sbjct: 391 FGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDV 426


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 187/541 (34%), Positives = 282/541 (52%), Gaps = 44/541 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMV 197
           KCG L E   +F+ +  R V+SW+ MI  Y   G  +E L L  +M  +G V P+ +T  
Sbjct: 32  KCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFT 91

Query: 198 SLISARTKLRDLEMGKNLH-LFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYE 255
            + +A   + DLE G+ +H L +    +K S ++L N L++MY +CG + EA+K+     
Sbjct: 92  GVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFD--T 149

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +D  D   WT++++   ++ E  EA  LF  M    +   ++ ++ +LN        +CA
Sbjct: 150 MDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLN--------ACA 201

Query: 316 SIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTS 360
             GAL  G  +H  +  +                    ++E +  +F+ +  +N   WT+
Sbjct: 202 CSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTA 261

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +IAA A  G   +A++LF EM   G   D  TFI +L ACSH GL+ E  +F       Y
Sbjct: 262 MIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDY 321

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I P   HY   +D +GRAG L+++   I SMP  P+   W +LL ACR H   + A   
Sbjct: 322 AIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKV 381

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L++  P +  A+ LL N+YA  GR  D  R+R  + D GLKK  G S IE    VH+
Sbjct: 382 AELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHE 441

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------QETSLQ----HRERLAVA 584
           F +GD  +P  +EI L L ++   +++ G             +E   Q    H E+LA+A
Sbjct: 442 FVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIA 501

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI+T   T + IV NLR+C DCH+  KV +++  R IV+RD  RFH F+ GQCSC+DY
Sbjct: 502 FGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDY 561

Query: 645 W 645
           W
Sbjct: 562 W 562



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 20/185 (10%)

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWN 162
           E+K  N+I+EN L+N Y                   +CG L+E  ++FD + + D  SW 
Sbjct: 118 ELKSSNAILENALLNMYV------------------RCGSLEEARKVFDTMDHPDAFSWT 159

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
           +MI+  T      E L L  +M  EG+ P  VT+ S+++A      L++GK +H  L+ S
Sbjct: 160 SMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDAS 219

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
               S      L+DMY KCG +  + K+    E    + V WT +++   +  + DEA  
Sbjct: 220 GFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETR--NSVSWTAMIAALAQHGQGDEALE 277

Query: 283 LFDEM 287
           LF EM
Sbjct: 278 LFKEM 282



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 24/291 (8%)

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           +E G+ +H  L       +    N LV MY KCG + EA+ +     I E  VV W+ ++
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFN--GILERTVVSWSAMI 58

Query: 269 SGYVKSNERDEARRLFDEM-----VERNLISWTLMISGM-----LNQDAEFKYKSCA--- 315
             Y       EA  LF  M     VE N +++T + +       L Q  E    + A   
Sbjct: 59  GAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGE 118

Query: 316 --SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
             S  A+     +++Y++       ++E A  +F  +   + + WTS+I A        +
Sbjct: 119 LKSSNAILENALLNMYVR-----CGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLE 173

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A++LF  M   G  P  VT  ++L+AC+  G +  G    S+          +     ++
Sbjct: 174 ALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLD-ASGFHSSVLAQTALL 232

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           D+  + G LE S+   T+M     VS W++++ A   H     A   FK +
Sbjct: 233 DMYAKCGSLECSSKVFTAMETRNSVS-WTAMIAALAQHGQGDEALELFKEM 282


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 191/595 (32%), Positives = 304/595 (51%), Gaps = 92/595 (15%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGD--LGYAQQIIRQGDEPEIKIWN 108
           C  +   ++I + +I   L+ DP  S+++  F   +    L Y+ +I++  + P I  WN
Sbjct: 63  CKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWN 122

Query: 109 SIIENQLINGYPQEVFAIYLYLV------------TRTVLLN------------------ 138
             I     +  P+E F +Y  ++            T  VL                    
Sbjct: 123 VTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHV 182

Query: 139 --------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                                CG ++   ++FD+ P RD++SWN +I+ Y  +G   + +
Sbjct: 183 LKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAI 242

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
            +   M +EGV PD+VTM+ L+S+ + L DL  GK  + +++E+ ++++  L+N L+DM+
Sbjct: 243 YVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMF 302

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KCG I EA+++    E  +  +V WTT++SGY +    D +R+LFD+M E++++ W  M
Sbjct: 303 SKCGDIHEARRIFDNLE--KRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAM 360

Query: 299 ISGML----NQDAEFKYK-------------------SCASIGALYHGIWVHVYIKKNQI 335
           I G +     QDA   ++                   +C+ +GAL  GIW+H YI+K  +
Sbjct: 361 IGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSL 420

Query: 336 SID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
           S++               NI  A  +F  I  +N   +T++I   A+ G A  AI  F E
Sbjct: 421 SLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNE 480

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M + G  PD++TFI LLSAC HGG++  G D+ S+    +N+ P+++HY  MVDLLGRAG
Sbjct: 481 MIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAG 540

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
            LEE+   + SMP+  D ++W +LL  CR H NV+L E A K L E DP + G +VLL  
Sbjct: 541 LLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDG 600

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           +Y +A   +D  R R  + + G++K  G S IE  G V +F   D   P SE+IY
Sbjct: 601 MYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIY 655



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 123/271 (45%), Gaps = 28/271 (10%)

Query: 37  VCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P  + +I +  SCS + +  R    + ++    L     +   + +     GD+  A+
Sbjct: 253 VKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEAR 312

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           +I    ++  I  W +     +I+GY                   +CG L    +LFD +
Sbjct: 313 RIFDNLEKRTIVSWTT-----MISGYA------------------RCGLLDVSRKLFDDM 349

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
             +DV+ WN MI         ++ L L  +M      PDE+TM+  +SA ++L  L++G 
Sbjct: 350 EEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +H ++E+ ++ ++ +L   LVDMY KCG I EA  +   + I   + + +T ++ G   
Sbjct: 410 WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVF--HGIQTRNSLTYTAIIGGLAL 467

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLN 304
             +   A   F+EM++  +    +   G+L+
Sbjct: 468 HGDASTAISYFNEMIDAGIAPDEITFIGLLS 498


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 178/470 (37%), Positives = 266/470 (56%), Gaps = 56/470 (11%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           L N ++  Y   G++ EA+++     + E D+V W T++ GY  + E D AR +F+ M +
Sbjct: 108 LCNVMLAAYVTRGEVAEARRVFD--GMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDD 165

Query: 290 RNLISWTLMIS----GMLNQDAEFKYK-------------------SCASIGALYHGIWV 326
           R+  SW+ M+S    G  ++DA   ++                   +C+ +GAL  G  V
Sbjct: 166 RDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEV 225

Query: 327 HVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H +++ N + +D               +IE +  +F  +  K+V  W+S+I   A  G  
Sbjct: 226 HQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFG 285

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
             A+ LF  M   G +P++VTFI +L +C+H GLV +G  + S  S V+ + PK+QHYGC
Sbjct: 286 HDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGC 345

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           MVDLLGR+GH+EE+   I  MP  PD  IW +LL ACR ++NV++AE A   L   DP  
Sbjct: 346 MVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHA 405

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
           DG +VLL+NIYA+A   + ++ +R  LR   +++  G S IE    +H+F SGD  +P S
Sbjct: 406 DGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRS 465

Query: 552 EEIYLMLNEIEMTLQQQG--------LQETSLQ--------HRERLAVAFGLISTSEKTT 595
           +EIY ML E+   L+Q G        LQ+   Q        H E+LAVAFGL++T   +T
Sbjct: 466 KEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGST 525

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +RI  NLR C DCHS +K+ + +Y R+++IRD  RFH F  G+CSC+DYW
Sbjct: 526 LRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 286/541 (52%), Gaps = 40/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG + + C++F+++P +D +SW  MI  Y+ +G + E L    KM  E V+ D+  
Sbjct: 150 MYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHV 209

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S + A   L+  + G+++H  + +   +    + N L DMY K G +  A  + G  +
Sbjct: 210 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG-ID 268

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
            +  +VV +T L+ GYV++ + ++   +F E+  + +       S ++        K+CA
Sbjct: 269 SECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLI--------KACA 320

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
           +  AL  G  +H  + K     D                +E A   F EI +     W S
Sbjct: 321 NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNS 380

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +++ +   G  + AI +F  M + G KP+ +TFI+LL+ CSH GLV+EG D+     + Y
Sbjct: 381 LVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTY 440

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            + P  +HY C++DLLGRAG L+E+  FI  MP  P+   W S L ACR H + ++ + A
Sbjct: 441 GVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLA 500

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L + +P N GA VLL+NIYA   + +D+  +RM++RD  +KK  GYS ++ G   H 
Sbjct: 501 AEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHV 560

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------------LQETSL-QHRERLAVA 584
           F + D  +P    IY  L+ +   ++  G               ++E  L +H ER+AVA
Sbjct: 561 FGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVA 620

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F LIS      I +  NLR+C DCHS +K  S+V  R+I++RDN RFH F  G CSC DY
Sbjct: 621 FALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDY 680

Query: 645 W 645
           W
Sbjct: 681 W 681



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 164/347 (47%), Gaps = 30/347 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG+L    +LFD +P R+++SW  MIS  +    + E +     M   G  P +  
Sbjct: 49  MYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFA 108

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S I A   L  +EMGK +H    +  +     + + L DMY KCG + +A K+    E
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVF--EE 166

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D V WT ++ GY K  E +EA   F +M++  +     ++   L         +C 
Sbjct: 167 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG--------ACG 218

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISE-KNVYLWT 359
           ++ A   G  VH  + K     D               ++E A ++F   SE +NV  +T
Sbjct: 219 ALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYT 278

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
            +I  Y      +K + +F+E+   G +P++ TF +L+ AC++   +++G    ++  ++
Sbjct: 279 CLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 338

Query: 420 -YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++  P +     +VD+ G+ G LE++      +  P +++ W+SL+
Sbjct: 339 NFDEDPFVSSI--LVDMYGKCGLLEQAIQAFDEIGDPTEIA-WNSLV 382



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 151/371 (40%), Gaps = 66/371 (17%)

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D   +  +I    K + L  GK LH  L  +       L N+LV+MY KCG++  A KL 
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
               + + ++V WT ++SG  ++++  EA R F  M     +      S  +        
Sbjct: 64  D--TMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAI-------- 113

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID-----NIELAYD----------LFSEISEKNVY 356
           ++CAS+G++  G  +H    K  I  +     N+E  Y           +F E+  K+  
Sbjct: 114 RACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEV 173

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGL 405
            WT++I  Y+  G  ++A+  F +M +     DQ    + L AC            H  +
Sbjct: 174 SWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV 233

Query: 406 VDEGY-----------DFLSK------KSRVYNIKPKMQH---YGCMVDLLGRAGHLEES 445
           V  G+           D  SK       S V+ I  + ++   Y C++D       +E+ 
Sbjct: 234 VKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKG 293

Query: 446 ANFITSM---PIPPDVSIWSSLLRAC----RCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
            +    +    I P+   +SSL++AC       Q  +L     K   + DP       +L
Sbjct: 294 LSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF---VSSIL 350

Query: 499 ANIYAKAGRLD 509
            ++Y K G L+
Sbjct: 351 VDMYGKCGLLE 361


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 187/522 (35%), Positives = 283/522 (54%), Gaps = 43/522 (8%)

Query: 157 DVISWNTMISCYTSMGMYRE-GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           D   +NT+I  Y   G  ++  L L   M  + + P++ T   ++ A   L  L +G+ +
Sbjct: 95  DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKC-GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           H  + +        + N +V MY  C G I  A+K+    E+ + D V W+ ++ GY + 
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFD--EMPKSDSVTWSAMIGGYARV 212

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
               EA  LF EM    +    + +  ML+        +C  +GAL  G W+  YI++++
Sbjct: 213 GRSTEAVALFREMQMAEVCPDEITMVSMLS--------ACTDLGALELGKWIEAYIERHE 264

Query: 335 IS---------ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           I          ID      +I  A  LF  ++EK +  WTSVI   AM G  Q+A  LF 
Sbjct: 265 IHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFE 324

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
           EM  +G  PD V FI LLSACSH GLV+ G ++     + Y + PK++HYGCMVD+  R 
Sbjct: 325 EMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRT 384

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499
           G ++E+  F+ +MPI P+  I  +L+ ACR H   KL E   K L + +PL++  +VLL+
Sbjct: 385 GLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLS 444

Query: 500 NIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN 559
           NIYAK    +  ++IR  +   G+KK  G ++IE    +++F +GD  +   +EIY M++
Sbjct: 445 NIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVD 504

Query: 560 EIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLR 603
           E+   +++ G                +E SL +H E+LA+AFGL+ T   T IRIV NLR
Sbjct: 505 EMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLR 564

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +C DCHS  K  S++Y+REI++RD  RFH F+ GQCSC D+W
Sbjct: 565 VCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 170/410 (41%), Gaps = 84/410 (20%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           ++C+++ +  +IH+H++   L  +P + T+            YA   +    E + ++++
Sbjct: 37  QACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSA-EADTRLYD 95

Query: 109 SIIENQLINGYPQ------EVFAIYLYLVTRTVLLNK----------------------- 139
           + + N LI  Y Q      +  A+Y  ++   +L NK                       
Sbjct: 96  AFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVH 155

Query: 140 -------------------------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
                                     G +    ++FD++P  D ++W+ MI  Y  +G  
Sbjct: 156 GSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRS 215

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
            E + L  +M    V PDE+TMVS++SA T L  LE+GK +  ++E   +     + N L
Sbjct: 216 TEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNAL 275

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           +DM+ KCG I +A KL     ++E  +V WT+++ G        EA  LF+EM    +  
Sbjct: 276 IDMFAKCGDISKALKLF--RAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAP 333

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKN 354
             +   G+L+        +C+  G           +++ +    ++   Y L  +I    
Sbjct: 334 DDVAFIGLLS--------ACSHSG----------LVERGREYFGSMMKKYKLVPKIEH-- 373

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC-SHG 403
              +  ++  Y   G  ++A++    M     +P+ V    L+SAC  HG
Sbjct: 374 ---YGCMVDMYCRTGLVKEALEFVRNMP---IEPNPVILRTLVSACRGHG 417



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 57/287 (19%), Positives = 122/287 (42%), Gaps = 38/287 (13%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
           + A VCP  + ++ +  +C+ +   E    I +++    + +  ++S  + +     GD+
Sbjct: 226 QMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDI 285

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV---------LLNKC 140
             A ++ R  +E  I  W S+I    ++G  QE   ++  + +  V         LL+ C
Sbjct: 286 SKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSAC 345

Query: 141 ---GKLKEVCQLFDKLPNR-----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
              G ++   + F  +  +      +  +  M+  Y   G+ +E L  +  M  E   P+
Sbjct: 346 SHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIE---PN 402

Query: 193 EVTMVSLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKC------GKIG 245
            V + +L+SA     + ++G+ +  L ++   +  S  +L  L ++Y K        KI 
Sbjct: 403 PVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVL--LSNIYAKTLSWEKKTKIR 460

Query: 246 EAQKLLGRYEID-----EVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           E  ++ G  ++      E+D  ++   V+G     +  E   + DEM
Sbjct: 461 EVMEVKGMKKVPGSTMIEIDNEIY-EFVAGDKSHKQHKEIYEMVDEM 506


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 184/534 (34%), Positives = 289/534 (54%), Gaps = 46/534 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK-- 205
           ++F+ + + D+ISWN+MIS      +  E + L   +  EG+ PD  T+ S+  A     
Sbjct: 342 EVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKA 401

Query: 206 ---LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
              L  L+ GK +H    ++       + + ++DMY KCG +  A  +     I   D V
Sbjct: 402 CGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNY--ISAPDDV 459

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            WT+++SG V +   D+A R++  M +  ++      + ++      K  SC  + AL  
Sbjct: 460 AWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLI------KASSC--VTALEQ 511

Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H  + K     D               NIE AY LF +++ +N+ LW +++   A 
Sbjct: 512 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 571

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G+A++A++LF  M+  G +PD+V+FI +LSACSH GL  E Y++L      Y I+P+++
Sbjct: 572 HGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIE 631

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HY C+VD LGRAG ++E+   I +MP     SI  +LL ACR   +V+  +     L   
Sbjct: 632 HYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFAL 691

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P +  A+VLL+NIYA A R DD++  R  ++   +KK  G+S I+    +H F   D  
Sbjct: 692 EPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRS 751

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTS 591
           +P ++ IY  + E+  T+++ G                +E SL  H E+LA+A+GLIST 
Sbjct: 752 HPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTP 811

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             TTIR++ NLR+CGDCH+ +K  S+V+ REIV+RD  RFH F+ G CSC DYW
Sbjct: 812 ASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 175/366 (47%), Gaps = 24/366 (6%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG++++   LFD +  RDV+ WN M+  Y  +G+ +E   L S+    G+ PDE +
Sbjct: 227 IYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFS 286

Query: 196 MVSLISA--RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           +  +++        DLE+GK +H    +S +    S+ N LV+MY K G    A+++   
Sbjct: 287 VQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFN- 345

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            ++  +D++ W +++S   +S+  +E+  LF +++   L      ++ +    A    K+
Sbjct: 346 -DMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAA---KA 401

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           C  +  L  G  +H +  K     D               ++  A  +F+ IS  +   W
Sbjct: 402 CGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAW 461

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           TS+I+     G+  +A+ ++  M ++   PD+ TF  L+ A S    +++G    +   +
Sbjct: 462 TSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK 521

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
           +  +         +VD+  + G++E++      M +  ++++W+++L     H N + A 
Sbjct: 522 LDCVSDPFVGTS-LVDMYAKCGNIEDAYRLFKKMNV-RNIALWNAMLVGLAQHGNAEEAV 579

Query: 479 HAFKHL 484
           + FK +
Sbjct: 580 NLFKSM 585



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 111/471 (23%), Positives = 204/471 (43%), Gaps = 87/471 (18%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM-----GMYREGLGLLSKMGAEGV 189
            + +KCG L    Q+FD  P RD+++WN ++  Y +      G  +EGL L   + A   
Sbjct: 120 TMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLG 179

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
           S   +T+  ++        L   + +H +  +  ++    +   LV++Y KCG++ +A+ 
Sbjct: 180 STTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARL 239

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL----ISWTLMISGML-- 303
           L     + E DVVLW  ++ GYV+     EA +LF E     L     S  L+++G L  
Sbjct: 240 LFDW--MRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWA 297

Query: 304 -NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------IELAYDLFSEIS 351
              D E        +G   HGI V   +  + +S+ N              A ++F+++ 
Sbjct: 298 GTDDLE--------LGKQVHGIAVKSGLDSD-VSVANSLVNMYSKMGCAYFAREVFNDMK 348

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF--IALLSACSHGG---LV 406
             ++  W S+I++ A +   +++++LF+++   G KPD  T   I L +A    G   L+
Sbjct: 349 HLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLL 408

Query: 407 DEGYDFLSKKSRVYNIKP----KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           D+G     K+   + IK      +     ++D+  + G +  +      +  P DV+ W+
Sbjct: 409 DQG-----KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA-WT 462

Query: 463 SLLRACRCHQNVKLA---------------EHAFKHLTETD----PLNDG----AHVL-- 497
           S++  C  + N   A               E+ F  L +       L  G    A+V+  
Sbjct: 463 SMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKL 522

Query: 498 -----------LANIYAKAGRLDDMSRI--RMKLRDMGLKKQLGYSLIEQG 535
                      L ++YAK G ++D  R+  +M +R++ L   +   L + G
Sbjct: 523 DCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHG 573



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/263 (19%), Positives = 99/263 (37%), Gaps = 51/263 (19%)

Query: 40  VSLDVIMVERSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQII 96
            S+ +    ++C  +   D+ ++IH+H I      D  +++ + +  +  GD+  A  + 
Sbjct: 391 ASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVF 450

Query: 97  RQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN------------------ 138
                P+   W S+I   + NG   +   IY  +    V+ +                  
Sbjct: 451 NYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALE 510

Query: 139 -----------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
                                        KCG +++  +LF K+  R++  WN M+    
Sbjct: 511 QGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLA 570

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR-DLEMGKNLHLFLEESTMKISG 228
             G   E + L   M + G+ PD V+ + ++SA +      E  + LH    +  ++   
Sbjct: 571 QHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEI 630

Query: 229 SLLNYLVDMYFKCGKIGEAQKLL 251
              + LVD   + G + EA K++
Sbjct: 631 EHYSCLVDALGRAGLVQEADKVI 653



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+       +L +GK  H  +  S       L N L+ MY KCG +  A+++       E
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFD--TTPE 140

Query: 259 VDVVLWTTLVSGY---VKSNERD--EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            D+V W  ++  Y   V SN+ +  E   LF  ++  +L S T M    +        K 
Sbjct: 141 RDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPV-------LKL 192

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           C + G L+    VH Y  K  +  D                +  A  LF  + E++V LW
Sbjct: 193 CLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLW 252

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             ++  Y   G  ++A  LF E   +G +PD+ +   +L+ C   G  D
Sbjct: 253 NMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDD 301


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 208/633 (32%), Positives = 310/633 (48%), Gaps = 102/633 (16%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC----QLFDKLPNRDVI 159
           +K   ++I    +N YP         LV+  +LL+    L +      +LF  + N DV 
Sbjct: 21  VKQIQALIFKTCLNSYP---------LVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVF 71

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKLRDLEMGKNLHLF 218
            +NT+I   +        L L  +M  + V+ PD  +   L+ A    R L  G  LH  
Sbjct: 72  MYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCL 131

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS--------- 269
                +     +   L+ MY +C  +  A+K+    E+ E ++V W  +V+         
Sbjct: 132 AVGYGLDSHLFVGTTLISMYAECACLVFARKVFD--EMIEPNIVAWNAIVAACFRCEGVK 189

Query: 270 ----------------------GYVKSNERDEARRLFDEMVERNLISWTLMISGML---N 304
                                 GY K+ E   AR +F +M  ++ +SW+ MI G     N
Sbjct: 190 DAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGN 249

Query: 305 QDAEFKY--------------------KSCASIGALYHGIWVHVYIKK---------NQI 335
            +  F +                     +CA  GA   G  +H +++K         N  
Sbjct: 250 FNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNA 309

Query: 336 SID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
            ID      N+++A  +F  +  ++   WT++IA  AM G+ ++AI LF EMEE+  KPD
Sbjct: 310 LIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPD 369

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            +TFI++L ACSH GLVD G  + S+    Y I+P ++HYGCMVDL GRAG L+++ +F+
Sbjct: 370 SITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFV 429

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             MPI P+  +W +LL AC  H N+ LA    + L+E DP N G HVLL+NIYA AG+  
Sbjct: 430 CQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWK 489

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           D++ +R  +    LKK  G+S+IE    ++ F +G+  N  + E +  L EI   L+ +G
Sbjct: 490 DVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEG 549

Query: 570 -----------------LQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
                             +++  QH E+LAVAFG+        IR+V NLRIC DCH+ M
Sbjct: 550 GYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVM 609

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K+ S+VY  EIV+RD  RFH F  G CSCRDYW
Sbjct: 610 KLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 188/656 (28%), Positives = 321/656 (48%), Gaps = 83/656 (12%)

Query: 42  LDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           + ++ +  +C S   + + + +H + I      D  +   + +     G +  A ++   
Sbjct: 228 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 287

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR-- 156
            +  ++  WN+++      GY Q                   G  K   +LF  +     
Sbjct: 288 MEFKDVVSWNAMVA-----GYSQS------------------GNFKAAFELFKNMRKENI 324

Query: 157 --DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
             D+++W  +I+ Y+  G   E L +  +M   G  P+ VT++S++SA   L     G  
Sbjct: 325 PLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGME 384

Query: 215 LHLF-LEESTMKISGS---------LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           +H + L+   + +            + N L+DMY KC     A+ +     ++E +VV W
Sbjct: 385 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 444

Query: 265 TTLVSGYVKSNERDEARRLFDEMVER--NLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           T ++ G+ +  + ++A +LF EM+     +      IS +L         +CA + A+  
Sbjct: 445 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCIL--------MACAHLAAIRI 496

Query: 323 GIWVHVYIKKNQ-----------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
           G  +H Y+ ++                      +++ A  +F  +S+K+   WTS++  Y
Sbjct: 497 GKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY 556

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
            M G   +A+D+F +M + G  PD +TF+ +L ACSH G+VD+G  +    S  Y + P+
Sbjct: 557 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 616

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
            +HY   +DLL R G L+++   +  MP+ P   +W +LL ACR H NV+LAEHA   L 
Sbjct: 617 AEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLV 676

Query: 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
           E +  NDG++ L++NIYA AGR  D++RIR  ++  G+KK+ G S ++       F  GD
Sbjct: 677 EMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGD 736

Query: 546 IFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLIS 589
             +P S +IY +L  +   ++  G + ET+               ++H E+LA+A+GL++
Sbjct: 737 RSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLT 796

Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           T     IRI  NLR+CGDCHS     S++ + EIV+RD  RFH F+ G CSC  YW
Sbjct: 797 TFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 177/415 (42%), Gaps = 73/415 (17%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR---DVISWNTMISCYTSMGM 173
           NG+   VF I   LV    + ++CG L+E   +FD++  R   DVISWN+++S +     
Sbjct: 146 NGFESNVF-ICNALVA---MYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 201

Query: 174 YREGLGLLSKMG------AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
               L L SKM             D +++V+++ A   L+ +   K +H     +   + 
Sbjct: 202 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 261

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             + N L+D Y KCG +  A K+    E    DVV W  +V+GY +S     A  LF  M
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFK--DVVSWNAMVAGYSQSGNFKAAFELFKNM 319

Query: 288 VERN----LISWTLMISGMLNQDAEFK-----------------------YKSCASIGAL 320
            + N    +++WT +I+G   +    +                         +CAS+GA 
Sbjct: 320 RKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAF 379

Query: 321 YHGIWVHVYIKKN-QISIDN------------------------IELAYDLFSEIS--EK 353
             G+ +H Y  KN  +++DN                         + A  +F +I   E+
Sbjct: 380 SQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEER 439

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           NV  WT +I  +A  G +  A+ LF+EM  E  G  P+  T   +L AC+H   +  G  
Sbjct: 440 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ 499

Query: 412 FLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             +   R +           C++++  + G ++ + +   SM     +S W+S++
Sbjct: 500 IHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMM 553



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 140/325 (43%), Gaps = 61/325 (18%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG       + +++     + WN +I  +   G     + +  +M   G   D  T+  +
Sbjct: 64  CGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHV 123

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A  +L     G   H  +  +  + +  + N LV MY +CG + EA  +      DE+
Sbjct: 124 LKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF-----DEI 178

Query: 260 ------DVVLWTTLVSGYVKSNERDEARRLFDEMV---------ER-NLISWTLMISGML 303
                 DV+ W ++VS +VKS+    A  LF +M          ER ++IS   ++    
Sbjct: 179 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 238

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIK-------------KNQISI------------- 337
           +  A  + K      A+ +G ++ V++              +N + +             
Sbjct: 239 SLKAVPQTKEVHG-NAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 297

Query: 338 ---------DNIELAYDLFSEISEKNVYL----WTSVIAAYAMAGHAQKAIDLFLEMEET 384
                     N + A++LF  + ++N+ L    WT+VIA Y+  G + +A+++F +M  +
Sbjct: 298 AMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFS 357

Query: 385 GTKPDQVTFIALLSACSHGGLVDEG 409
           G+ P+ VT I++LSAC+  G   +G
Sbjct: 358 GSLPNCVTIISVLSACASLGAFSQG 382



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 114/283 (40%), Gaps = 27/283 (9%)

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           SL   +V  Y  CG    A  +L R  +     V W  L+  ++K    D A  +   M+
Sbjct: 52  SLGTGVVASYLACGATDYALLVLER--VTPSPAVWWNLLIREHIKQGRLDSAINVSCRML 109

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV------HVYIKKNQISI----D 338
                     +  +L    E     C   G+ +HG+        +V+I    +++     
Sbjct: 110 RAGTRLDHFTLPHVLKACGELPSYRC---GSAFHGLICCNGFESNVFICNALVAMYSRCG 166

Query: 339 NIELAYDLFSEISEK---NVYLWTSVIAAYAMAGHAQKAIDLFLEM------EETGTKPD 389
           ++E A  +F EI+++   +V  W S+++A+  + +A  A+DLF +M      + T  + D
Sbjct: 167 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 226

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            ++ + +L AC     V +  +      R             ++D   + G +E +    
Sbjct: 227 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVG-NALIDAYAKCGLMENAVKVF 285

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL-TETDPLN 491
             M    DV  W++++       N K A   FK++  E  PL+
Sbjct: 286 NMMEF-KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLD 327


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 188/656 (28%), Positives = 321/656 (48%), Gaps = 83/656 (12%)

Query: 42  LDVIMVERSCSS---IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           + ++ +  +C S   + + + +H + I      D  +   + +     G +  A ++   
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR-- 156
            +  ++  WN+++      GY Q                   G  K   +LF  +     
Sbjct: 181 MEFKDVVSWNAMVA-----GYSQS------------------GNFKAAFELFKNMRKENI 217

Query: 157 --DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
             D+++W  +I+ Y+  G   E L +  +M   G  P+ VT++S++SA   L     G  
Sbjct: 218 PLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGME 277

Query: 215 LHLF-LEESTMKISGS---------LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           +H + L+   + +            + N L+DMY KC     A+ +     ++E +VV W
Sbjct: 278 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 337

Query: 265 TTLVSGYVKSNERDEARRLFDEMVER--NLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           T ++ G+ +  + ++A +LF EM+     +      IS +L         +CA + A+  
Sbjct: 338 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCIL--------MACAHLAAIRI 389

Query: 323 GIWVHVYIKKNQ-----------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
           G  +H Y+ ++                      +++ A  +F  +S+K+   WTS++  Y
Sbjct: 390 GKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY 449

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
            M G   +A+D+F +M + G  PD +TF+ +L ACSH G+VD+G  +    S  Y + P+
Sbjct: 450 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 509

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
            +HY   +DLL R G L+++   +  MP+ P   +W +LL ACR H NV+LAEHA   L 
Sbjct: 510 AEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLV 569

Query: 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
           E +  NDG++ L++NIYA AGR  D++RIR  ++  G+KK+ G S ++       F  GD
Sbjct: 570 EMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGD 629

Query: 546 IFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLIS 589
             +P S +IY +L  +   ++  G + ET+               ++H E+LA+A+GL++
Sbjct: 630 RSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLT 689

Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           T     IRI  NLR+CGDCHS     S++ + EIV+RD  RFH F+ G CSC  YW
Sbjct: 690 TFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 177/415 (42%), Gaps = 73/415 (17%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR---DVISWNTMISCYTSMGM 173
           NG+   VF I   LV    + ++CG L+E   +FD++  R   DVISWN+++S +     
Sbjct: 39  NGFESNVF-ICNALVA---MYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 94

Query: 174 YREGLGLLSKMG------AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
               L L SKM             D +++V+++ A   L+ +   K +H     +   + 
Sbjct: 95  AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 154

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             + N L+D Y KCG +  A K+    E    DVV W  +V+GY +S     A  LF  M
Sbjct: 155 VFVGNALIDAYAKCGLMENAVKVFNMMEFK--DVVSWNAMVAGYSQSGNFKAAFELFKNM 212

Query: 288 VERN----LISWTLMISGMLNQDAEFK-----------------------YKSCASIGAL 320
            + N    +++WT +I+G   +    +                         +CAS+GA 
Sbjct: 213 RKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAF 272

Query: 321 YHGIWVHVYIKKN-QISIDN------------------------IELAYDLFSEIS--EK 353
             G+ +H Y  KN  +++DN                         + A  +F +I   E+
Sbjct: 273 SQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEER 332

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           NV  WT +I  +A  G +  A+ LF+EM  E  G  P+  T   +L AC+H   +  G  
Sbjct: 333 NVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQ 392

Query: 412 FLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             +   R +           C++++  + G ++ + +   SM     +S W+S++
Sbjct: 393 IHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMM 446



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 123/277 (44%), Gaps = 61/277 (22%)

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G   D  T+  ++ A  +L     G   H  +  +  + +  + N LV MY +CG + EA
Sbjct: 5   GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 64

Query: 248 QKLLGRYEIDEV------DVVLWTTLVSGYVKSNERDEARRLFDEMV---------ER-N 291
             +      DE+      DV+ W ++VS +VKS+    A  LF +M          ER +
Sbjct: 65  SMIF-----DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK-------------KNQISI- 337
           +IS   ++    +  A  + K      A+ +G ++ V++              +N + + 
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHG-NAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 178

Query: 338 ---------------------DNIELAYDLFSEISEKNVYL----WTSVIAAYAMAGHAQ 372
                                 N + A++LF  + ++N+ L    WT+VIA Y+  G + 
Sbjct: 179 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH 238

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           +A+++F +M  +G+ P+ VT I++LSAC+  G   +G
Sbjct: 239 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 275



 Score = 39.3 bits (90), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 12/163 (7%)

Query: 339 NIELAYDLFSEISEK---NVYLWTSVIAAYAMAGHAQKAIDLFLEM------EETGTKPD 389
           ++E A  +F EI+++   +V  W S+++A+  + +A  A+DLF +M      + T  + D
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            ++ + +L AC     V +  +      R             ++D   + G +E +    
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVG-NALIDAYAKCGLMENAVKVF 178

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL-TETDPLN 491
             M    DV  W++++       N K A   FK++  E  PL+
Sbjct: 179 NMMEF-KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLD 220


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 185/538 (34%), Positives = 275/538 (51%), Gaps = 41/538 (7%)

Query: 139  KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
            K GKL     +  +   +DV+SW TMI+ YT      + L    +M   G+  DEV + +
Sbjct: 520  KLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTN 579

Query: 199  LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
             +SA   L+ L+ G+ +H     S         N LV +Y KCG I EA   L   + + 
Sbjct: 580  AVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEA--YLAFEQTEA 637

Query: 259  VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             D + W  LVSG+ +S   +EA R+F  M    + S        +        K+ +   
Sbjct: 638  GDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAV--------KAASETA 689

Query: 319  ALYHGIWVHVYIKK----------NQI-----SIDNIELAYDLFSEISEKNVYLWTSVIA 363
             +  G  VH  I K          N I        +I  A   F E+S KN   W ++I 
Sbjct: 690  NMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMIN 749

Query: 364  AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            AY+  G   +A+D F +M  +  +P+ VT + +LSACSH GLVD+G ++    +  Y + 
Sbjct: 750  AYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLA 809

Query: 424  PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
            PK +HY C+VD+L RAG L  + +FI  MPI PD  +W +LL AC  H+N+++ E A  H
Sbjct: 810  PKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHH 869

Query: 484  LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
            L E +P +   +VLL+N+YA   + D     R K+++ G+KK+ G S IE    +H F  
Sbjct: 870  LLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYV 929

Query: 544  GDIFNPHSEEIYLMLNEIEM----------------TLQQQGLQETSLQHRERLAVAFGL 587
            GD  +P ++EI+    ++                   LQQ+    T   H E+LA++FGL
Sbjct: 930  GDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGL 989

Query: 588  ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +S      I ++ NLR+C DCH ++K  S+V NREI++RD  RFH F+GG CSC+DYW
Sbjct: 990  LSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 164/362 (45%), Gaps = 49/362 (13%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KC  ++     F +    +V+ WN M+  Y  +   R    +  +M  E + P++ T
Sbjct: 416 LYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYT 475

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++    +L DLE+G+ +H  + +++ +++  + + L+DMY K GK+  A  +L R+ 
Sbjct: 476 YPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA 535

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
               DVV WTT+++GY + N  D+A   F +M++R + S  + ++  ++        +CA
Sbjct: 536 GK--DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVS--------ACA 585

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            + AL  G  +H     +  S D               NIE AY  F +    +   W +
Sbjct: 586 GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNA 645

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEG 409
           +++ +  +G+ ++A+ +F  M   G   +  TF + + A S           H  +   G
Sbjct: 646 LVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTG 705

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
           YD    ++ V N          ++ +  + G + ++      + +  +VS W++++ A  
Sbjct: 706 YD---SETEVCN---------AIISMYAKCGSISDAKKQFLELSMKNEVS-WNAMINAYS 752

Query: 470 CH 471
            H
Sbjct: 753 KH 754



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/482 (21%), Positives = 197/482 (40%), Gaps = 79/482 (16%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           ++  S+DE  ++HS ++      +  +S ++ +F +F GDL  A ++  +  E  I  WN
Sbjct: 79  KTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWN 138

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTV---------LLNKC------------------- 140
            +I+         +VF ++  +V   V         +L  C                   
Sbjct: 139 KMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIY 198

Query: 141 ---GKLKEVC-----------------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
              GK   VC                 ++FD L  +D  SW  MIS  +      E + L
Sbjct: 199 QGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRL 258

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
              M   G+ P      S++SA  K+  LE+G+ LH  + +        + N LV +YF 
Sbjct: 259 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 318

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
            G +  A+ +     + + D V + TL++G  +    ++A  LF  M    L   +  ++
Sbjct: 319 LGSLISAEHIFSN--MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLA 376

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYD 345
            ++         +C+S G L+ G  +H Y  K   + +               +IE A +
Sbjct: 377 SLV--------VACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALN 428

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
            F E   +NV LW  ++ AY +    + +  +F +M+     P+Q T+ ++L  C   G 
Sbjct: 429 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 488

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           ++ G       S++     ++  Y C  ++D+  + G L+ + + +       DV  W++
Sbjct: 489 LELGEQI---HSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTT 544

Query: 464 LL 465
           ++
Sbjct: 545 MI 546



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 143/324 (44%), Gaps = 34/324 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     +F  +  RD +++NT+I+  +  G   + + L  +M  +G+ PD  T+ SL+
Sbjct: 320 GSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLV 379

Query: 201 SARTKLRDLEMGKNLHLFLEE----STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            A +    L  G+ LH +  +    S  KI G+LLN    +Y KC  I  A       E+
Sbjct: 380 VACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLN----LYAKCSDIETALNYFLETEV 435

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
           +  +VVLW  ++  Y   ++   + R+F +M    ++        +L        K+C  
Sbjct: 436 E--NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL--------KTCIR 485

Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
           +G L  G  +H  I K    ++                ++ A+D+    + K+V  WT++
Sbjct: 486 LGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 545

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           IA Y       KA+  F +M + G + D+V     +SAC+    + EG   +  ++ V  
Sbjct: 546 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSG 604

Query: 422 IKPKMQHYGCMVDLLGRAGHLEES 445
               +     +V L  + G++EE+
Sbjct: 605 FSSDLPFQNALVTLYSKCGNIEEA 628



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 180/422 (42%), Gaps = 66/422 (15%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L    ++FD++P R + +WN MI    S  +  +   L  +M  E V+P+E T   ++
Sbjct: 117 GDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVL 176

Query: 201 SA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-GRYEIDE 258
            A R      ++ + +H  +    +  S  + N L+D+Y + G +  A+++  G Y  D 
Sbjct: 177 EACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDH 236

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
                W  ++SG  K+    EA RLF +M    ++      S +L+        +C  I 
Sbjct: 237 SS---WVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLS--------ACKKIE 285

Query: 319 ALYHGIWVHVYIKKNQISIDN------IELAYDL---------FSEISEKNVYLWTSVIA 363
           +L  G  +H  + K   S D       + L + L         FS +S+++   + ++I 
Sbjct: 286 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLIN 345

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV-YNI 422
             +  G+ +KA++LF  M+  G +PD  T  +L+ ACS  G +  G    +  +++ +  
Sbjct: 346 GLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFAS 405

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSM------------------------------ 452
             K++  G +++L  +   +E + N+                                  
Sbjct: 406 NDKIE--GALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 463

Query: 453 ----PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGR 507
                I P+   + S+L+ C    +++L E     + +T   LN     +L ++YAK G+
Sbjct: 464 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGK 523

Query: 508 LD 509
           LD
Sbjct: 524 LD 525



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 28/266 (10%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
            L +KCG ++E    F++    D I+WN ++S +   G   E L + ++M  EG+  +  
Sbjct: 617 TLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNF 676

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  S + A ++  +++ GK +H  + ++       + N ++ MY KCG I +A+K     
Sbjct: 677 TFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQF--L 734

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
           E+   + V W  +++ Y K     EA   FD+M+  N+    + + G+L+        +C
Sbjct: 735 ELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLS--------AC 786

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           + IG +  GI             +++   Y L  +        +  V+     AG   +A
Sbjct: 787 SHIGLVDKGIEY----------FESMNTEYGLAPKPEH-----YVCVVDMLTRAGLLSRA 831

Query: 375 IDLFLEMEETGTKPDQVTFIALLSAC 400
            D  LEM     +PD + +  LLSAC
Sbjct: 832 KDFILEMP---IEPDALVWRTLLSAC 854


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 188/543 (34%), Positives = 286/543 (52%), Gaps = 51/543 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +K G+L++   +FD++  RD++SWN++I+ Y         L     M   G+ PD +T
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLT 325

Query: 196 MVSLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           +VSL S  ++L D  + ++ L   +    +     + N LV+MY K G +  A  +    
Sbjct: 326 VVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFD-- 383

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE-RNLI----SWTLMISGMLNQDAEF 309
           ++   D + W TLV+GY ++    EA   ++ M E R+ I    +W  +I          
Sbjct: 384 QLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY------- 436

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKN 354
                + +GAL  G+ +H  + KN + +D                +E A  LF EI    
Sbjct: 437 -----SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDT 491

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              W ++IA+  + G  ++A+ LF +M     K D +TF++LLSACSH GLVDEG     
Sbjct: 492 SVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFD 551

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
              + Y IKP ++HYGCMVDLLGRAG+LE++   + +MPI PD SIW +LL AC+ + N 
Sbjct: 552 IMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNA 611

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           +L   A   L E D  N G +VLL+NIYA   + + + ++R   RD GL+K  G+S +  
Sbjct: 612 ELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVV 671

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHR 578
           G     F +G+  +P   EIY  L  +   ++  G                 ++    H 
Sbjct: 672 GSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHS 731

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           ERLA+AFG+IST  ++ IRI  NLR+CGDCH+  K  S++  REIV+RD+ RFH F+ G 
Sbjct: 732 ERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGI 791

Query: 639 CSC 641
           CSC
Sbjct: 792 CSC 794



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 128/565 (22%), Positives = 258/565 (45%), Gaps = 88/565 (15%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           SC +++  +++H+ L+     ++  +ST++    V  GD+  ++       +  I  WNS
Sbjct: 31  SCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNS 90

Query: 110 IIE---------------NQLIN----GYPQEVFAIYLYLVTRTV--------------- 135
           II                NQL +    G+ +  F  +  ++   V               
Sbjct: 91  IISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKM 150

Query: 136 --------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                         L ++ G L    ++F  +P +DV SWN MIS +   G     LG+L
Sbjct: 151 GFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVL 210

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
           ++M  EGV  D +T+ S++    +  D+  G  +HL + +  +     + N L++MY K 
Sbjct: 211 NRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKF 270

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTL 297
           G++ +AQ +  + E+   D+V W ++++ Y ++N+   A R F  M    +  +L++  +
Sbjct: 271 GRLQDAQMVFDQMEVR--DLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLT-VV 327

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIW-----------VHVYIKKNQISIDNIELAYDL 346
            ++ + +Q ++ +  S + +G +    W           V++Y K     +  +  A+ +
Sbjct: 328 SLTSIFSQLSDQRI-SRSILGFVIRREWLDKDVVIGNALVNMYAK-----LGYMNCAHTV 381

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGL 405
           F ++  K+   W +++  Y   G A +AID +  MEE   T P+Q T+++++ A SH G 
Sbjct: 382 FDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGA 441

Query: 406 VDEGYDFLSK--KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI-WS 462
           + +G    +K  K+ +Y     +    C++DL G+ G LE++ +      IP D S+ W+
Sbjct: 442 LQQGMKIHAKLIKNSLY---LDVFVATCLIDLYGKCGRLEDAMSLFYE--IPRDTSVPWN 496

Query: 463 SLLRACRCHQNVKLAEHAFKH-LTETDPLNDGAHVLLANIYAKAGRLDDMSR-IRMKLRD 520
           +++ +   H   + A   FK  L E    +    V L +  + +G +D+  +   +  ++
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 521 MGLKKQLGY-----SLIEQGGFVHK 540
            G+K  L +      L+ + G++ K
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEK 581



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 77/283 (27%)

Query: 303 LNQDAEFK--YKSCASIGAL--YHGIWVHVYIKKNQISID-----------NIELAYDLF 347
           L++DA+F   + SC ++ A    H + + V+ K   I +            +I L+   F
Sbjct: 19  LHKDADFNALFNSCVNVNATKKLHALLL-VFGKSQNIVLSTKLINLYVTHGDISLSRSTF 77

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAID----LFLEMEETGTKPDQVTFIALLSACSHG 403
             I +KN++ W S+I+AY   G   +A++    LF        +PD  TF  +L AC   
Sbjct: 78  DYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV-- 135

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
            LVD       KK      K   +        +V L  R G L+ +      MP+  DV 
Sbjct: 136 SLVD------GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPV-KDVG 188

Query: 460 IWSSLLRA-CR--------------------------------CHQN------VKLAEHA 480
            W++++   C+                                C Q+      V +  H 
Sbjct: 189 SWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI--RMKLRDM 521
            KH  ++D     A   L N+Y+K GRL D   +  +M++RD+
Sbjct: 249 LKHGLDSDVFVSNA---LINMYSKFGRLQDAQMVFDQMEVRDL 288


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 187/542 (34%), Positives = 295/542 (54%), Gaps = 38/542 (7%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG-AEGVSPDEVTMVS 198
           C ++    ++FD + +R +  WN MI+ Y+     +E L L   M  + G+  +  TM  
Sbjct: 351 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +       + +H F+ +  +     + N L+DMY + GKI  A ++ G+ E  +
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME--D 468

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM--VERNLISWTLMISGMLNQDAEFK-YKSCA 315
            D+V W T+++GYV S   ++A  L  +M  +ER +      +S   N         SCA
Sbjct: 469 RDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCA 528

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           ++ AL  G  +H Y  KN ++ D                ++++  +F +I +KNV  W  
Sbjct: 529 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNV 588

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I AY M G+ Q+AIDL   M   G KP++VTFI++ +ACSH G+VDEG          Y
Sbjct: 589 IIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDY 648

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD-VSIWSSLLRACRCHQNVKLAEH 479
            ++P   HY C+VDLLGRAG ++E+   +  MP   +    WSSLL A R H N+++ E 
Sbjct: 649 GVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEI 708

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A ++L + +P     +VLLANIY+ AG  D  + +R  +++ G++K+ G S IE G  VH
Sbjct: 709 AAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAV 583
           KF +GD  +P SE++   L  +   ++++G + +TS                 H E+LA+
Sbjct: 769 KFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAI 828

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFG+++TS  T IR+  NLR+C DCH   K  S++ +REI++RD  RFHRF+ G CSC D
Sbjct: 829 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD 888

Query: 644 YW 645
           YW
Sbjct: 889 YW 890



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 165/377 (43%), Gaps = 54/377 (14%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           T   +  K GKL     L      RD+++WNT++S         E L  L +M  EGV P
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           DE T+ S++ A + L  L  GK LH + L+  ++  +  + + LVDMY  C ++     L
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV-----L 355

Query: 251 LGRYEID---EVDVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLNQD 306
            GR   D   +  + LW  +++GY ++    EA  LF  M E   L++ +  ++G++   
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV--- 412

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +C   GA      +H ++ K  +  D                I++A  +F ++ 
Sbjct: 413 -----PACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME 467

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-----------ETGTKPDQVTFIALLSAC 400
           ++++  W ++I  Y  + H + A+ L  +M+               KP+ +T + +L +C
Sbjct: 468 DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSC 527

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPP 456
           +    + +G     K+   Y IK  +         +VD+  + G L+ S      +P   
Sbjct: 528 AALSALAKG-----KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QK 581

Query: 457 DVSIWSSLLRACRCHQN 473
           +V  W+ ++ A   H N
Sbjct: 582 NVITWNVIIMAYGMHGN 598



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 188/453 (41%), Gaps = 97/453 (21%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG    V ++FD++  R+ +SWN++IS   S   +   L     M  E V P   T
Sbjct: 142 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201

Query: 196 MVSLISARTKL---RDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           +VS+++A + L     L MGK +H + L +   +++  ++N LV MY K GK+  ++ LL
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG--ELNSFIINTLVAMYGKLGKLASSKVLL 259

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
           G +     D+V W T++S   ++ +  EA     EMV   +      IS +L        
Sbjct: 260 GSF--GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL-------- 309

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNV 355
            +C+ +  L  G  +H Y  KN    +N  +   L                F  + ++ +
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACS-----------HG 403
            LW ++IA Y+   H ++A+ LF+ MEE+ G   +  T   ++ AC            HG
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHG 429

Query: 404 GLVDEGYD--------FLSKKSRVYNIKPKMQHYGCMVD--------------------- 434
            +V  G D         +   SR+  I   M+ +G M D                     
Sbjct: 430 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489

Query: 435 ---LLGRAGHLEESA-----------NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
              LL +  +LE              N IT M I P  +  S+L +    H       +A
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA------YA 543

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
            K+   TD     A   L ++YAK G L  MSR
Sbjct: 544 IKNNLATDVAVGSA---LVDMYAKCGCL-QMSR 572



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 22/257 (8%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           W  ++       + RE +     M   G+ PD     +L+ A   L+D+E+GK +H  + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 221 ESTMKI-SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
           +    + S ++ N LV++Y KCG  G   K+  R  I E + V W +L+S      + + 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEM 182

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY-IKKNQIS-- 336
           A   F  M++ N+   +  +  ++   +            L  G  VH Y ++K +++  
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-----GLMMGKQVHAYGLRKGELNSF 237

Query: 337 -IDNIELAYDLFSEISEKNVYL----------WTSVIAAYAMAGHAQKAIDLFLEMEETG 385
            I+ +   Y    +++   V L          W +V+++        +A++   EM   G
Sbjct: 238 IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 297

Query: 386 TKPDQVTFIALLSACSH 402
            +PD+ T  ++L ACSH
Sbjct: 298 VEPDEFTISSVLPACSH 314



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 6/156 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L+   ++FD++P ++VI+WN +I  Y   G  +E + LL  M  +GV P+EVT +S
Sbjct: 564 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623

Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           + +A +    ++ G +  ++   +  ++ S      +VD+  + G+I EA +L+     D
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
                 W++L+      N  +       E+  +NLI
Sbjct: 684 FNKAGAWSSLLGASRIHNNLE-----IGEIAAQNLI 714


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 199/580 (34%), Positives = 301/580 (51%), Gaps = 78/580 (13%)

Query: 136 LLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           L   C       +LFD++P  ++D + +  +I          E L L  +M    +  D 
Sbjct: 66  LYGSCSLPSHARKLFDEIPQSHKDSVDYTALIRHCPPF----ESLKLFIQMRQFDLPLDG 121

Query: 194 VTMVSLISARTKLR--DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           V MV  ++A  +L   D ++G  +H+ + +        + N L+++Y K G +GEA+K+ 
Sbjct: 122 VVMVCALNACARLGGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMF 181

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG---------- 301
              E+    VV W+  + G VK    +  R LFDEM ERN ++WT+MI G          
Sbjct: 182 EGIEVR--SVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEA 239

Query: 302 -MLNQDAEFK-------------YKSCASIGALYHGIWVHVYIKKNQISID--------- 338
            +L ++  F                +C+  G +  G WVH Y  K ++ +D         
Sbjct: 240 FLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVK-EMGLDFGVMVGTSL 298

Query: 339 --------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                    I  A  +F  + ++NV  W +++   AM G  + A+D+F  M E   KPD 
Sbjct: 299 VDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEE-VKPDG 357

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           VTF+ALLSACSH GLV++G+D+      VY IKP+++HY CMV LLGRAG LEE+   + 
Sbjct: 358 VTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVK 417

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
           +M IPP+  +  SL+ +C  H  ++L E   + L E DPLN   H++L+N+YA +G+++ 
Sbjct: 418 NMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEK 477

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG- 569
            + +R  L+  G+KK  G S I   G +H+F +GD  +  + EIY+ L+E+   L+  G 
Sbjct: 478 ANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGY 537

Query: 570 LQETSLQ------------------------HRERLAVAFGLISTSEKTTIRIVNNLRIC 605
           +  TS Q                        H E+LA+ FGL+ST   + + I  NLRIC
Sbjct: 538 VPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRIC 597

Query: 606 GDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            DCHS +K+ S+VY REIV+RD  RFH F+ G CSC DYW
Sbjct: 598 QDCHSAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDYW 637


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 183/572 (31%), Positives = 301/572 (52%), Gaps = 60/572 (10%)

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           +WN  + N L++ Y                  +K   + +  +LFD++P +D +S+N +I
Sbjct: 242 VWNVFVSNALLDFY------------------SKHDSVIDARKLFDEMPEQDGVSYNVII 283

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           S Y   G ++    L  ++        +    +++S  +   D EMG+ +H     +T  
Sbjct: 284 SGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTAD 343

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
               + N LVDMY KCGK  EA+ +     +     V WT ++S YV+    +E  +LF+
Sbjct: 344 SEILVGNSLVDMYAKCGKFEEAEMIFT--NLTHRSAVPWTAMISAYVQKGFYEEGLQLFN 401

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI---------- 335
           +M + ++I+     + +L        ++ ASI +L  G  +H +I K+            
Sbjct: 402 KMRQASVIADQATFASLL--------RASASIASLSLGKQLHSFIIKSGFMSNVFSGSAL 453

Query: 336 -----SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                   +I+ A   F E+ ++N+  W ++I+AYA  G A+  +  F EM  +G +PD 
Sbjct: 454 LDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDS 513

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           V+F+ +LSACSH GLV+EG    +  +++Y + P+ +HY  +VD+L R+G   E+   + 
Sbjct: 514 VSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMA 573

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA-HVLLANIYAKAGRLD 509
            MPI PD  +WSS+L ACR H+N +LA  A   L   + L D A +V ++NIYA AG+ +
Sbjct: 574 EMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWE 633

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           ++S++   +RD G+KK   YS +E     H F++ D  +P  EEI   ++ +  T+++ G
Sbjct: 634 NVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELG 693

Query: 570 LQ----------------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
            +                E+   H ERLA+AF LIST E + I ++ NLR C DCH+ +K
Sbjct: 694 YKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIK 753

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           V S++  REI +RD+ RFH F+ G CSC D+W
Sbjct: 754 VISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 115/495 (23%), Positives = 197/495 (39%), Gaps = 116/495 (23%)

Query: 72  DPQISTQVFEFLVF--TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLY 129
           DP  S   F    F   G+L  A+Q+  +         N++  N +I+GY          
Sbjct: 44  DPDTSRSNFRVGNFLKNGELSQARQLFEKMPHK-----NTVSTNMMISGYV--------- 89

Query: 130 LVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
                    K G L E  +LFD +  R  ++W  +I  Y+ +  ++E   L  +M   G 
Sbjct: 90  ---------KSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGT 140

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS----LLNYLVDMYFKCGKIG 245
            PD VT V+L+S        EMG  +   ++   +K+       + N LVD Y K  ++ 
Sbjct: 141 EPDYVTFVTLLSG---CNGHEMGNQITQ-VQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 196

Query: 246 EAQKLLGRY-EIDEV-------------DVVL--------------WTTLVSG-----YV 272
            A +L     EID               D+VL              W   VS      Y 
Sbjct: 197 LACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYS 256

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK-------------------- 312
           K +   +AR+LFDEM E++ +S+ ++ISG    D + KY                     
Sbjct: 257 KHDSVIDARKLFDEMPEQDGVSYNVIISGYA-WDGKHKYAFDLFRELQFTAFDRKQFPFA 315

Query: 313 ---SCAS------IGALYHGIWVHVYIKKNQISIDN-----------IELAYDLFSEISE 352
              S AS      +G   H   + V    ++I + N            E A  +F+ ++ 
Sbjct: 316 TMLSIASNTLDWEMGRQIHAQTI-VTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTH 374

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--- 409
           ++   WT++I+AY   G  ++ + LF +M +     DQ TF +LL A +    +  G   
Sbjct: 375 RSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQL 434

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
           + F+ K   + N+         ++D+  + G ++++      MP    VS W++++ A  
Sbjct: 435 HSFIIKSGFMSNVFSG----SALLDVYAKCGSIKDAVQTFQEMPDRNIVS-WNAMISAYA 489

Query: 470 CHQNVKLAEHAFKHL 484
            +   +    +FK +
Sbjct: 490 QNGEAEATLKSFKEM 504



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 34/248 (13%)

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            ++ SL S ++    L +  N+   + ++      S  N+ V  + K G++ +A++L  +
Sbjct: 13  TSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEK 72

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG--MLNQDAE--- 308
             +   + V    ++SGYVKS    EAR+LFD MVER  ++WT++I G   LNQ  E   
Sbjct: 73  --MPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFE 130

Query: 309 --FKYKSCA------SIGALYHGIWVHVYIKK-NQISIDNIELAYDLFSEISEKNVYLWT 359
              + + C       +   L  G   H    +  Q+    I+L YD         + +  
Sbjct: 131 LFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYD-------SRLIVGN 183

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD-----EGYDFLS 414
           +++ +Y  +     A  LF EM E     D  TF A+L  C++ GL D     + + F+ 
Sbjct: 184 TLVDSYCKSNRLDLACQLFKEMPEI----DSFTFAAVL--CANIGLDDIVLGQQIHSFVI 237

Query: 415 KKSRVYNI 422
           K + V+N+
Sbjct: 238 KTNFVWNV 245


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 173/542 (31%), Positives = 294/542 (54%), Gaps = 42/542 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +    G L +  +LF+ + +RDV++WN +I+ Y     + E + L  ++  +GV  +++T
Sbjct: 250 MFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDIT 309

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            V +++  T L  L  GK +H  ++E+       +   L+ +Y +C   G+A K+    +
Sbjct: 310 FVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIF--VD 367

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   DV+ WT +   Y ++  R EA +LF EM        +  +  +L+        +CA
Sbjct: 368 MGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD--------TCA 419

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            + AL  G  +H +I +N+  ++                +  A  +F +++++++ +W S
Sbjct: 420 HLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNS 479

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ AYA  G+  + + LF +M+  G K D V+F+++LSA SH G V +GY +     + +
Sbjct: 480 MLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDF 539

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMP-IPPDVSIWSSLLRACRCHQNVKLAEH 479
           +I P  + YGC+VDLLGRAG ++E+ + +  +    PD  +W +LL ACR H     A+ 
Sbjct: 540 SITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKA 599

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A + + E DP + GA+V+L+N+YA AG  D ++R+R  +R  G+KK+ G S IE    VH
Sbjct: 600 AAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVH 659

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAV 583
           +F  GD  +P    IY  L+ +   ++  G                 ++    H ERLA+
Sbjct: 660 EFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAI 719

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGLIST   T +R++ NLR+C DCH+  K  S++  REI++RD  RFH F+ G+CSC+D
Sbjct: 720 AFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKD 779

Query: 644 YW 645
           YW
Sbjct: 780 YW 781



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 183/399 (45%), Gaps = 62/399 (15%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           QI++QG E ++      +   LIN Y                  NKCG ++     F +L
Sbjct: 130 QILQQGFEGDV-----FVGTALINMY------------------NKCGSVRGAWDSFKRL 166

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
            +RDV+SW  MI+       +     L  +M  +GV P+++T+ ++ +A      L  GK
Sbjct: 167 EHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGK 226

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            ++  +    M+    ++N  V+M+   G +G+A++L    ++ + DVV W  +++ YV+
Sbjct: 227 FVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLF--EDMVDRDVVTWNIVITLYVQ 284

Query: 274 SNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY 329
           +    EA RLF  +    V+ N I++ LM++               S+ +L  G  +H  
Sbjct: 285 NENFGEAVRLFGRLQQDGVKANDITFVLMLN------------VYTSLTSLAKGKVIHEL 332

Query: 330 IKKNQISIDNIEL---------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           +K+     D +                 A+ +F ++  K+V  WT +  AYA  G  ++A
Sbjct: 333 VKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEA 392

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK--KSRVYNIKPKMQHYGCM 432
           + LF EM+  G +P   T +A+L  C+H   + +G    S   ++R    + +M     +
Sbjct: 393 LQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENR---FRMEMVVETAL 449

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           +++ G+ G + E+ +    M    D+ +W+S+L A   H
Sbjct: 450 INMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQH 487



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 138/298 (46%), Gaps = 30/298 (10%)

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
           +N L+ G+  +++A             +CG + E  Q+F+ L  +DV +W  MI  Y   
Sbjct: 37  QNNLVCGHLIQMYA-------------QCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQ 83

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G Y   LG+  +M  E V P +VT V++++A      L+ G  +H  + +   +    + 
Sbjct: 84  GDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVG 143

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
             L++MY KCG +  A     R E    DVV WT +++  V+ ++   AR L+  M    
Sbjct: 144 TALINMYNKCGSVRGAWDSFKRLE--HRDVVSWTAMIAACVQHDQFALARWLYRRMQLDG 201

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL--------- 342
           ++   + +  + N   +  Y    S G   +G+ V   + ++ + + N  +         
Sbjct: 202 VVPNKITLYTVFNAYGDPNY---LSEGKFVYGL-VSSGVMESDVRVMNSAVNMFGNAGLL 257

Query: 343 --AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
             A  LF ++ +++V  W  VI  Y    +  +A+ LF  +++ G K + +TF+ +L+
Sbjct: 258 GDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLN 315



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 150/332 (45%), Gaps = 36/332 (10%)

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD    V+L+   +  ++++ G+ +H  + +   + +  +  +L+ MY +CG + EAQ++
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 251 LGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
              +EI +  DV  WT ++  Y +  + D A  +F +M E +++   +    +LN     
Sbjct: 62  ---FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILN----- 113

Query: 310 KYKSCASIGALYHGIWVH-----------VYIKKNQISIDN----IELAYDLFSEISEKN 354
              +CAS  +L  G+ +H           V++    I++ N    +  A+D F  +  ++
Sbjct: 114 ---ACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRD 170

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YD 411
           V  WT++IAA         A  L+  M+  G  P+++T   + +A      + EG   Y 
Sbjct: 171 VVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYG 230

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            +S       ++  ++     V++ G AG L ++      M +  DV  W+ ++     +
Sbjct: 231 LVSSGV----MESDVRVMNSAVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITLYVQN 285

Query: 472 QNVKLAEHAFKHLTETD-PLNDGAHVLLANIY 502
           +N   A   F  L +     ND   VL+ N+Y
Sbjct: 286 ENFGEAVRLFGRLQQDGVKANDITFVLMLNVY 317


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 187/542 (34%), Positives = 295/542 (54%), Gaps = 38/542 (7%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG-AEGVSPDEVTMVS 198
           C ++    ++FD + +R +  WN MI+ Y+     +E L L   M  + G+  +  TM  
Sbjct: 351 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +       + +H F+ +  +     + N L+DMY + GKI  A ++ G+ E  +
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME--D 468

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM--VERNLISWTLMISGMLNQDAEFK-YKSCA 315
            D+V W T+++GYV S   ++A  L  +M  +ER +      +S   N         SCA
Sbjct: 469 RDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCA 528

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           ++ AL  G  +H Y  KN ++ D                ++++  +F +I +KNV  W  
Sbjct: 529 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNV 588

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I AY M G+ Q+AIDL   M   G KP++VTFI++ +ACSH G+VDEG          Y
Sbjct: 589 IIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDY 648

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD-VSIWSSLLRACRCHQNVKLAEH 479
            ++P   HY C+VDLLGRAG ++E+   +  MP   +    WSSLL A R H N+++ E 
Sbjct: 649 GVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEI 708

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A ++L + +P     +VLLANIY+ AG  D  + +R  +++ G++K+ G S IE G  VH
Sbjct: 709 AAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAV 583
           KF +GD  +P SE++   L  +   ++++G + +TS                 H E+LA+
Sbjct: 769 KFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAI 828

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFG+++TS  T IR+  NLR+C DCH   K  S++ +REI++RD  RFHRF+ G CSC D
Sbjct: 829 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD 888

Query: 644 YW 645
           YW
Sbjct: 889 YW 890



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 165/377 (43%), Gaps = 54/377 (14%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           T   +  K GKL     L      RD+++WNT++S         E L  L +M  EGV P
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           DE T+ S++ A + L  L  GK LH + L+  ++  +  + + LVDMY  C ++     L
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV-----L 355

Query: 251 LGRYEID---EVDVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLNQD 306
            GR   D   +  + LW  +++GY ++    EA  LF  M E   L++ +  ++G++   
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV--- 412

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +C   GA      +H ++ K  +  D                I++A  +F ++ 
Sbjct: 413 -----PACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME 467

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-----------ETGTKPDQVTFIALLSAC 400
           ++++  W ++I  Y  + H + A+ L  +M+               KP+ +T + +L +C
Sbjct: 468 DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSC 527

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPP 456
           +    + +G     K+   Y IK  +         +VD+  + G L+ S      +P   
Sbjct: 528 AALSALAKG-----KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QK 581

Query: 457 DVSIWSSLLRACRCHQN 473
           +V  W+ ++ A   H N
Sbjct: 582 NVITWNVIIMAYGMHGN 598



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 188/453 (41%), Gaps = 97/453 (21%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG    V ++FD++  R+ +SWN++IS   S   +   L     M  E V P   T
Sbjct: 142 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201

Query: 196 MVSLISARTKL---RDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           +VS+++A + L     L MGK +H + L +   +++  ++N LV MY K GK+  ++ LL
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG--ELNSFIINTLVAMYGKLGKLASSKVLL 259

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
           G +     D+V W T++S   ++ +  EA     EMV   +      IS +L        
Sbjct: 260 GSF--GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL-------- 309

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNV 355
            +C+ +  L  G  +H Y  KN    +N  +   L                F  + ++ +
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACS-----------HG 403
            LW ++IA Y+   H ++A+ LF+ MEE+ G   +  T   ++ AC            HG
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHG 429

Query: 404 GLVDEGYD--------FLSKKSRVYNIKPKMQHYGCMVD--------------------- 434
            +V  G D         +   SR+  I   M+ +G M D                     
Sbjct: 430 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489

Query: 435 ---LLGRAGHLEESA-----------NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
              LL +  +LE              N IT M I P  +  S+L +    H       +A
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA------YA 543

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
            K+   TD     A   L ++YAK G L  MSR
Sbjct: 544 IKNNLATDVAVGSA---LVDMYAKCGCL-QMSR 572



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 22/257 (8%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           W  ++       + RE +     M   G+ PD     +L+ A   L+D+E+GK +H  + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 221 ESTMKI-SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
           +    + S ++ N LV++Y KCG  G   K+  R  I E + V W +L+S      + + 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEM 182

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY-IKKNQIS-- 336
           A   F  M++ N+   +  +  ++   +            L  G  VH Y ++K +++  
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-----GLMMGKQVHAYGLRKGELNSF 237

Query: 337 -IDNIELAYDLFSEISEKNVYL----------WTSVIAAYAMAGHAQKAIDLFLEMEETG 385
            I+ +   Y    +++   V L          W +V+++        +A++   EM   G
Sbjct: 238 IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 297

Query: 386 TKPDQVTFIALLSACSH 402
            +PD+ T  ++L ACSH
Sbjct: 298 VEPDEFTISSVLPACSH 314



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 6/156 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L+   ++FD++P ++VI+WN +I  Y   G  +E + LL  M  +GV P+EVT +S
Sbjct: 564 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623

Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           + +A +    ++ G +  ++   +  ++ S      +VD+  + G+I EA +L+     D
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
                 W++L+      N  +       E+  +NLI
Sbjct: 684 FNKAGAWSSLLGASRIHNNLE-----IGEIAAQNLI 714


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 292/567 (51%), Gaps = 68/567 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +     +F+++  +  + WN MIS Y   GM  +   L  +M +E V  DE T  S++
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307

Query: 201 SARTKLRDLEMGKNLHL--------FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           SA         GK++H         F+ E+ + ++    N LV +Y K GKI  A+++  
Sbjct: 308 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN----NALVTLYSKGGKIVIAKRIFD 363

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA- 307
              +   DVV W T++SGY+ S   D+A  +F  M  +N +SW +M+SG     L++DA 
Sbjct: 364 TMNLK--DVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDAL 421

Query: 308 --------------EFKYK----SCASIGALYHGIWVHVYIKKNQISIDN---------- 339
                         ++ Y     +C  +GAL HG  +H ++ +      N          
Sbjct: 422 KLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMY 481

Query: 340 -----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                +  A  +F  +   +   W ++I+A    GH ++A++LF +M   G  PD+++F+
Sbjct: 482 AKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFL 541

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +L+AC+H GLVDEG+ +     R + I P   HY  ++DLLGR+G + E+ + I +MP 
Sbjct: 542 TILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPF 601

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            P  SIW ++L  CR + +++   +A   L    P +DG ++LL+N Y+ AGR  D +R+
Sbjct: 602 EPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARV 661

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS 574
           R  +RD G+KK+ G S IE G  +H F  GD  +P ++E+Y  L  I   +++ G    +
Sbjct: 662 RKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDT 721

Query: 575 ----------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                             H E+LAV FGL+      T+ ++ NLRICGDCH+ M   S+ 
Sbjct: 722 KFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKA 781

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
             REIV+RD  RFH F+ G+CSC +YW
Sbjct: 782 VGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 190/448 (42%), Gaps = 83/448 (18%)

Query: 50  SCSSIDEFERIHSHLITTNLMR---DPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
           S S +     +H+ L+T +L+     P ++ ++      + DL     + R   +P    
Sbjct: 37  SSSFLRALRCLHARLLTADLLHAPSHPHLTLRLIHLYTLSPDLATPAALFRSDPDP---- 92

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP--NRDVISWNTM 164
              +    L+  +                     G+L++    FD +P   RD +  N M
Sbjct: 93  -GPVAATSLVAAH------------------AAAGRLRDAAAFFDAVPPARRDTVLHNAM 133

Query: 165 ISCYTSMGMYREGLGLL-SKMGAEGVSPDEVTMVSLISARTKLRDLEMG--KNLHLFLEE 221
           +S +    +    + +  + +G+  + PD+ +  +LISA  ++ +L       LH  + +
Sbjct: 134 MSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLK 193

Query: 222 STMKISGSLLNYLVDMYFKCGKI---GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           S      S+ N L+ +Y KC       +A+K+L   E+ + D + WTT+V GYV+  + +
Sbjct: 194 SGAAAVLSVSNALIALYMKCDTPEASWDARKVLD--EMPDKDDLTWTTMVVGYVRRGDVN 251

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQ----DA---------------EFKYKS----CA 315
            AR +F+E+  +  + W  MISG +      DA               EF + S    CA
Sbjct: 252 AARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACA 311

Query: 316 SIGALYHGIWVHV--------YIKKNQISIDN-----------IELAYDLFSEISEKNVY 356
           + G   HG  VH         ++ +  + ++N           I +A  +F  ++ K+V 
Sbjct: 312 NAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVV 371

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W ++++ Y  +G   KA+++F  M       + ++++ ++S   HGGL ++     ++ 
Sbjct: 372 SWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMVMVSGYVHGGLSEDALKLFNQM 427

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
            R  ++KP    Y   +   G  G L+ 
Sbjct: 428 -RAEDVKPCDYTYAGAIAACGELGALKH 454



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 36/207 (17%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT------------- 163
           N  P+    +   LVT   L +K GK+    ++FD +  +DV+SWNT             
Sbjct: 332 NFVPEAALPVNNALVT---LYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDK 388

Query: 164 ------------------MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
                             M+S Y   G+  + L L ++M AE V P + T    I+A  +
Sbjct: 389 AVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGE 448

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           L  L+ G+ LH  L +   + S S  N L+ MY KCG + +A+ +     +  +D V W 
Sbjct: 449 LGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVF--LVMPNLDSVSWN 506

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNL 292
            ++S   +     EA  LFD+MV   +
Sbjct: 507 AMISALGQHGHGREALELFDQMVAEGI 533



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +   +F  +PN D +SWN MIS     G  RE L L  +M AEG+ PD ++ ++
Sbjct: 483 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 542

Query: 199 LISARTKLRDLEMGKNLHLFLE-ESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYE 255
           +++A      ++ G   H F   +    IS    +Y  L+D+  + G+IGEA+ L+    
Sbjct: 543 ILTACNHAGLVDEG--FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP 600

Query: 256 IDEVDVVLWTTLVSG 270
            +    + W  ++SG
Sbjct: 601 FEPTPSI-WEAILSG 614


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 305/585 (52%), Gaps = 64/585 (10%)

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDV 158
           P +K+ + +  + +++GY    F +       T LLN     G +    Q+F  +PN D 
Sbjct: 23  PRLKLLHQVHAHVIVSGYGCSRFLL-------TKLLNLACAAGSISYTRQIFLIVPNPDS 75

Query: 159 ISWNTMI---SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
             + ++I   S + +  +Y   L   ++M    V+P   T  S+I +   L  L  G+ +
Sbjct: 76  FLFTSLIRSTSKFHNFSVY--SLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRII 133

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           H  +  +       +   L+  Y KCG +  A+K+  +  + +  VV W +++SGY ++ 
Sbjct: 134 HGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDK--MRDRSVVTWNSMISGYEQNG 191

Query: 276 ERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
              EA RLFD M    VE N  ++  ++S            +CA +GA   G WVH Y  
Sbjct: 192 FAKEAIRLFDRMKEIGVEPNSATFVSVLS------------ACAHLGAFILGCWVHEYAV 239

Query: 332 KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            N + ++               N+  A ++F  + E+NV  WT++I+ Y   G+  +A++
Sbjct: 240 GNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVE 299

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF EM   G  P+ +TF+A+LSAC+H GLV+EG          Y + P+++H+ C+VD+L
Sbjct: 300 LFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDML 359

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG L+E+ NFI  +   P  +IW+++L AC+ H+N  L     +H   ++P N   +V
Sbjct: 360 GRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYV 419

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           +L+NIYA AGR+D +  +R  +    LKKQ+GYS I+     + F+ GD  +  + EIY 
Sbjct: 420 ILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYH 479

Query: 557 MLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTIRIVN 600
            L+++    ++ G    S                  H E+LA+AFGL+ TS  T IRIV 
Sbjct: 480 YLDQLMRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVK 539

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCHS +K  S + NREI++RD  RFH F+ G CSC DYW
Sbjct: 540 NLRMCEDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDYW 584



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 116/289 (40%), Gaps = 54/289 (18%)

Query: 34  FANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
            +NV P +     V +SC+ +        IH H++      D  + T +  F    G L 
Sbjct: 104 LSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLC 163

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY----------------------- 127
            A+++  +  +  +  WNS+I     NG+ +E   ++                       
Sbjct: 164 NARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACA 223

Query: 128 ---------------------LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNT 163
                                L +V  T L+N   +CG + +  ++FD +  R+V++W  
Sbjct: 224 HLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTA 283

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MIS Y + G   + + L  +M   G+ P+ +T V+++SA      +  G+ +   + E  
Sbjct: 284 MISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREE- 342

Query: 224 MKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
            ++   + ++  LVDM  + G + EA   +     +E    +WT ++  
Sbjct: 343 YRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIH-EEPAPAIWTAMLGA 390


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 172/524 (32%), Positives = 288/524 (54%), Gaps = 31/524 (5%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD++  RD +SWNT+I        ++E L ++ +M  +G  PD  T+ +++    +  
Sbjct: 125 KVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECA 184

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D++ G  +H +  ++       + + L+DMY  C ++  + K+   +   + D VLW ++
Sbjct: 185 DIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFS--DCDAVLWNSM 242

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV- 326
           ++GY ++   +EA  +F  M++  +    +  S ++     F   S   +G   H   + 
Sbjct: 243 LAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLI---PAFGNLSLLRLGKQLHAYLIR 299

Query: 327 -----HVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
                +++I  + I +     N+++A  +F+ I   ++  WT++I  YA+ G   +A  L
Sbjct: 300 ARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVL 359

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F  ME    KP+ +TF+A+L+ACSH GLVD G+ + +  S  Y   P ++H   + D LG
Sbjct: 360 FERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLG 419

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAG L+E+ NFI+ M I P  S+WS+LLRACR H+N  LAE   K + E +P + G+HV+
Sbjct: 420 RAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVI 479

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           L+N+Y+ +GR ++ +++R  +R  G+KK+   S IE    +H F + D  +P  + I   
Sbjct: 480 LSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDA 539

Query: 558 LNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNN 601
           LN     + +QG                 +E    H E+LA+ FG+IST   TTIR++ N
Sbjct: 540 LNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKN 599

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LR+C DCH   K  S++  REIV+RD  RFHRF+ G CSC D+W
Sbjct: 600 LRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 188/535 (35%), Positives = 295/535 (55%), Gaps = 48/535 (8%)

Query: 148 QLFDKLPNR-DVISWNTMISCYTSMGMY----REGLGLLSKMGAEGVSPDEVTMVSLISA 202
           Q+FD++P+  DV+ +NT++  Y   G       E   +  +M  EGV+PD  T VSL+ A
Sbjct: 88  QVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKA 147

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
               R  E G+  H    ++       +   L++MY +CG +  A+ +  R  +D   VV
Sbjct: 148 CASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDR--MDGECVV 205

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            +  +++  V+S+   EA  LF EM  + L   ++ +  +L+        +CA +GAL  
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLS--------ACALLGALEL 257

Query: 323 GIWVHVYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G W+H YI+K         N   ID      ++E A  +F ++  ++   W+ ++ AYA 
Sbjct: 258 GRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYAN 317

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G+ ++AI +F EM++ G KPD VTF+ +L ACSH G+V EG  +     R Y I   ++
Sbjct: 318 HGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIK 376

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HYGC+ DLL R+G LE +  FI  +PI P   +W +LL AC  H +V + +  F+ + E 
Sbjct: 377 HYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILEL 436

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           D  + G +V+ +N+ A  GR ++M+ +R  + + G+ K  G S IE    VH+F +GD  
Sbjct: 437 DDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGS 496

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQ-HRERLAVAFGLIST 590
           +PHS+E   M++E+   L+  G                 + TSL+ H E+LA++FGL++T
Sbjct: 497 HPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNT 556

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  TT+RIV NLR+C DCHS  K+ S V+NR I++RD  RFH F+ G CSC DYW
Sbjct: 557 APGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 29/271 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG ++    +FD++    V+S+N MI+      +  E L L  +M A+G+ P  VT++S
Sbjct: 185 ECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLIS 244

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA   L  LE+G+ +H ++ +  +     +   L+DMY KCG + +A  +    +++ 
Sbjct: 245 VLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVF--QDMES 302

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D   W+ ++  Y       EA  +F+EM ++ +    +   G+L         +C+  G
Sbjct: 303 RDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVL--------YACSHSG 354

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            +  G+     +++           Y + S I  K+    T ++A       A K ID  
Sbjct: 355 MVSEGLQYFDSMRE-----------YGIVSGI--KHYGCVTDLLARSGQLERAYKFID-- 399

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
               E   KP  + +  LLSAC+  G VD G
Sbjct: 400 ----ELPIKPTAILWRTLLSACAGHGDVDMG 426


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 183/572 (31%), Positives = 301/572 (52%), Gaps = 60/572 (10%)

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           +WN  + N L++ Y                  +K   + +  +LFD++P +D +S+N +I
Sbjct: 282 VWNVFVSNALLDFY------------------SKHDSVIDARKLFDEMPEQDGVSYNVII 323

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           S Y   G ++    L  ++        +    +++S  +   D EMG+ +H     +T  
Sbjct: 324 SGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTAD 383

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
               + N LVDMY KCGK  EA+ +     +     V WT ++S YV+    +E  +LF+
Sbjct: 384 SEILVGNSLVDMYAKCGKFEEAEMIFTN--LTHRSAVPWTAMISAYVQKGFYEEGLQLFN 441

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI---------- 335
           +M + ++I+     + +L        ++ ASI +L  G  +H +I K+            
Sbjct: 442 KMRQASVIADQATFASLL--------RASASIASLSLGKQLHSFIIKSGFMSNVFSGSAL 493

Query: 336 -----SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                   +I+ A   F E+ ++N+  W ++I+AYA  G A+  +  F EM  +G +PD 
Sbjct: 494 LDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDS 553

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           V+F+ +LSACSH GLV+EG    +  +++Y + P+ +HY  +VD+L R+G   E+   + 
Sbjct: 554 VSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMA 613

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA-HVLLANIYAKAGRLD 509
            MPI PD  +WSS+L ACR H+N +LA  A   L   + L D A +V ++NIYA AG+ +
Sbjct: 614 EMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWE 673

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           ++S++   +RD G+KK   YS +E     H F++ D  +P  EEI   ++ +  T+++ G
Sbjct: 674 NVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELG 733

Query: 570 LQ----------------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
            +                E+   H ERLA+AF LIST E + I ++ NLR C DCH+ +K
Sbjct: 734 YKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIK 793

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           V S++  REI +RD+ RFH F+ G CSC D+W
Sbjct: 794 VISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 167/361 (46%), Gaps = 27/361 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K  +L   CQLF ++P  D +S+N MI+ Y+  G+  + + L  +M   G+ P E T  +
Sbjct: 196 KSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAA 255

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A   L D+ +G+ +H F+ ++    +  + N L+D Y K   + +A+KL    E+ E
Sbjct: 256 VLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD--EMPE 313

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQ-DAEFKYK- 312
            D V +  ++SGY    +   A  LF E+     +R    +  M+S   N  D E   + 
Sbjct: 314 QDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI 373

Query: 313 ------SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                 + A    L     V +Y K  +      E A  +F+ ++ ++   WT++I+AY 
Sbjct: 374 HAQTIVTTADSEILVGNSLVDMYAKCGK-----FEEAEMIFTNLTHRSAVPWTAMISAYV 428

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIK 423
             G  ++ + LF +M +     DQ TF +LL A +    +  G   + F+ K   + N+ 
Sbjct: 429 QKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVF 488

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
                   ++D+  + G ++++      MP    VS W++++ A   +   +    +FK 
Sbjct: 489 SG----SALLDVYAKCGSIKDAVQTFQEMPDRNIVS-WNAMISAYAQNGEAEATLKSFKE 543

Query: 484 L 484
           +
Sbjct: 544 M 544



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 116/496 (23%), Positives = 200/496 (40%), Gaps = 77/496 (15%)

Query: 72  DPQISTQVFEFLVF--TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLY 129
           DP  S   F    F   G+L  A+Q+  +         N++  N +I+GY          
Sbjct: 49  DPDTSRSNFRVGNFLKNGELSQARQLFEKMPHK-----NTVSTNMMISGYV--------- 94

Query: 130 LVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
                    K G L E  +LFD +  R  ++W  +I  Y+ +  ++E   L  +M   G 
Sbjct: 95  ---------KSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGT 145

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS----LLNYLVDMYFKCGKIG 245
            PD VT V+L+S        EMG  +   ++   +K+       + N LVD Y K  ++ 
Sbjct: 146 EPDYVTFVTLLSG---CNGHEMGNQITQ-VQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 201

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
            A +L    E+ E+D V +  +++GY K    ++A  LF EM            SG+   
Sbjct: 202 LACQLFK--EMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQN----------SGLKPT 249

Query: 306 DAEFKYKSCASIG--ALYHGIWVHVYIKKNQI---------------SIDNIELAYDLFS 348
           +  F    CA+IG   +  G  +H ++ K                    D++  A  LF 
Sbjct: 250 EFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD 309

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           E+ E++   +  +I+ YA  G  + A DLF E++ T     Q  F  +LS  S+    + 
Sbjct: 310 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEM 369

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G   +  ++ V     ++     +VD+  + G  EE+    T++     V  W++++ A 
Sbjct: 370 GRQ-IHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP-WTAMISAY 427

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
                 +     F  + +            A++ A       + R    +  + L KQL 
Sbjct: 428 VQKGFYEEGLQLFNKMRQ------------ASVIADQATFASLLRASASIASLSLGKQL- 474

Query: 529 YSLIEQGGFVHKFTSG 544
           +S I + GF+    SG
Sbjct: 475 HSFIIKSGFMSNVFSG 490



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 43/191 (22%)

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           M KN+  FL+ S+++     LN + ++  +  K G            + D       V  
Sbjct: 13  MKKNVSTFLKSSSLQSPKLRLNVVNNIDARIVKTGF-----------DPDTSRSNFRVGN 61

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
           ++K+ E  +AR+LF++M  +N +S  +MISG                           Y+
Sbjct: 62  FLKNGELSQARQLFEKMPHKNTVSTNMMISG---------------------------YV 94

Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           K       N+  A  LF  + E+    WT +I  Y+     ++A +LF++M+  GT+PD 
Sbjct: 95  KSG-----NLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDY 149

Query: 391 VTFIALLSACS 401
           VTF+ LLS C+
Sbjct: 150 VTFVTLLSGCN 160


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 184/544 (33%), Positives = 288/544 (52%), Gaps = 46/544 (8%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            L +K GK+ E   L     + D+ SWN ++  Y      R+ L   S M   G+  DE+T
Sbjct: 1042 LYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEIT 1101

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            + + I A   L +L+ GK +  +  +        + + ++DMY KCG +  A +L G  E
Sbjct: 1102 LATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFG--E 1159

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY--KS 313
            I   D V WTT++SGY+++ + D A  ++  M           +SG+   +  F    K+
Sbjct: 1160 ISRPDEVAWTTMISGYIENGDEDHALSVYHLM----------RVSGVQPDEYTFATLIKA 1209

Query: 314  CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
             + + AL  G  +H  + K   S+D               +++ AY +F ++  + V  W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 359  TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
             +++   A  GH  +A++LF  M+  G +PD+VTFI +LSACSH GL  E Y +     +
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 419  VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
             Y I P+++HY C+VD LGRAG ++E+ N I SMP     S++ +LL ACR   + + A+
Sbjct: 1330 TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAK 1389

Query: 479  HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
                 L   DP +  A+VLL+NIYA + + DD++  R  ++   +KK  G+S I+    V
Sbjct: 1390 RVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKV 1449

Query: 539  HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL-QHRERL 581
            H F   D  +P +  IY  + ++   ++++G                 +E +L  H E+L
Sbjct: 1450 HLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKL 1509

Query: 582  AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
            A+AFGLIST    TIR++ NLR+CGDCHS +K  S++  REIV+RD  RFH F+ G CSC
Sbjct: 1510 AIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSC 1569

Query: 642  RDYW 645
             DYW
Sbjct: 1570 GDYW 1573



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 171/360 (47%), Gaps = 20/360 (5%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            + +K G +    + F   P  D+ISWNTMIS Y    +  E +     +  +G+ PD+ T
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 196  MVSLISARTKLRDLE---MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL- 251
            + S++ A +   + E   +G  +H++  +  +     +   L+D+Y K GK+ EA+ LL 
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057

Query: 252  GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL------ISWTLMISG-MLN 304
            G+Y+    D+  W  ++ GY+KSN+  +A   F  M E  +      ++  +  SG ++N
Sbjct: 1058 GKYDF---DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLIN 1114

Query: 305  QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364
                 + ++ A      + +WV   +    I   ++  A +LF EIS  +   WT++I+ 
Sbjct: 1115 LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISG 1174

Query: 365  YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            Y   G    A+ ++  M  +G +PD+ TF  L+ A S    +++G       + V  +  
Sbjct: 1175 YIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQI---HANVVKLDY 1231

Query: 425  KMQHY--GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
             + H+    +VD+  + G ++++      M +   V  W+++L     H +V  A + F+
Sbjct: 1232 SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVDEALNLFR 1290



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 32/290 (11%)

Query: 129 YLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCY-----TSMGMYREGLGLLS 182
           YL    + + +KCG L    Q+FDK  +RD+++WN++++ Y     +S     EG  L  
Sbjct: 647 YLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFG 706

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
            +   G S   +T+  L+        +++ + +H +  +   ++   +   LV++Y K G
Sbjct: 707 LLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYG 766

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL---ISWTLMI 299
            +G+A+ L  +  + E D VLW  ++  YV+++ +DEA R F            S    +
Sbjct: 767 LVGQARLLFDK--MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCV 824

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359
            G +N D     K         H   V  Y  K             +F      N++ W 
Sbjct: 825 IGGVNSDVSNNRKR--------HAEQVKAYAMK-------------MFPFDQGSNIFAWN 863

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
             +  +  AG    AID F  +  +    D VT + +LSA      +D G
Sbjct: 864 KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG 913



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 153/380 (40%), Gaps = 46/380 (12%)

Query: 58   ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
            E +H + +      D  +S  +       G +G A+ +  +  E +  +WN +++  + N
Sbjct: 737  ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 118  GYPQEVFAIYLYL------------------VTRTVLLNKCGKLKEV----CQLFDKLPN 155
             +  E    +                     V   V  N+    ++V     ++F     
Sbjct: 797  SFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQG 856

Query: 156  RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
             ++ +WN  ++ +   G     +     +    +  D VT+V ++SA     DL++G+ +
Sbjct: 857  SNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQI 916

Query: 216  HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
            H  + +S+      + N L++MY K G +  A+K        E+D++ W T++S Y ++N
Sbjct: 917  HALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--INSPELDLISWNTMISSYAQNN 974

Query: 276  ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH-GIWVHVYIKKNQ 334
               EA   F +++   L      ++ +L      +  S    G  +  G  VHVY  K  
Sbjct: 975  LEMEAICTFRDLLRDGLKPDQFTLASVL------RACSTGDEGEYFTLGSQVHVYAIKCG 1028

Query: 335  ISIDNI--ELAYDLFS---EISEKNVYL----------WTSVIAAYAMAGHAQKAIDLFL 379
            I  D+       DL+S   ++ E    L          W +++  Y  +  ++KA++ F 
Sbjct: 1029 IINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFS 1088

Query: 380  EMEETGTKPDQVTFIALLSA 399
             M E G   D++T    + A
Sbjct: 1089 LMHEMGIPIDEITLATAIKA 1108



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 109/492 (22%), Positives = 193/492 (39%), Gaps = 106/492 (21%)

Query: 58   ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII------ 111
            +R H+ ++T+  + D  ++  +       G L  A+Q+  +  + ++  WNSI+      
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 112  -----ENQL---------------------------------------INGYPQEVFAIY 127
                 EN L                                       ++GY  ++    
Sbjct: 691  ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI-GFE 749

Query: 128  LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
            L L     L+N   K G + +   LFDK+P RD + WN M+  Y       E L   S  
Sbjct: 750  LDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF 809

Query: 185  GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL-FLEESTMKI----SGSLL---NYLVD 236
               G  PD   +  +I       D+   +  H   ++   MK+     GS +   N  + 
Sbjct: 810  HRSGFFPDFSNLHCVIGGVNS--DVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLT 867

Query: 237  MYFKCGKIGEAQ---KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
             +   G+I  A    K L R  I   D V    ++S  V +++ D   ++   +++ +  
Sbjct: 868  EFLHAGQIVAAIDCFKTLLRSTIGH-DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926

Query: 294  SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
                + + ++N               +Y    V VY  +    I++ EL  DL S     
Sbjct: 927  PVVPVSNSLMN---------------MYSKAGV-VYAAEKTF-INSPEL--DLIS----- 962

Query: 354  NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-YDF 412
                W ++I++YA      +AI  F ++   G KPDQ T  ++L ACS G   DEG Y  
Sbjct: 963  ----WNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFT 1015

Query: 413  LSKKSRVYNIKPKMQHYG----CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA- 467
            L  +  VY IK  + +       ++DL  + G ++E A F+       D++ W++++   
Sbjct: 1016 LGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDE-AEFLLHGKYDFDLASWNAIMFGY 1074

Query: 468  CRCHQNVKLAEH 479
             + +++ K  EH
Sbjct: 1075 IKSNKSRKALEH 1086



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 26/202 (12%)

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           + DL++GK  H  +  S       L N L+ MY KCG +  A+++  +    + D+V W 
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSS--DRDLVTWN 681

Query: 266 TLVSGYVKSNERD-----EARRLFDEMVERNLISWTLM---------ISGMLNQDAEFKY 311
           ++++ Y +  +       E  RLF  + E       L          +SG + Q +E  +
Sbjct: 682 SILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV-QVSETVH 740

Query: 312 KSCASIG----ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
                IG        G  V++Y K   +    +     LF ++ E++  LW  ++ AY  
Sbjct: 741 GYAVKIGFELDLFVSGALVNIYCKYGLVGQARL-----LFDKMPERDAVLWNVMLKAYVE 795

Query: 368 AGHAQKAIDLFLEMEETGTKPD 389
                +A+  F     +G  PD
Sbjct: 796 NSFQDEALRFFSAFHRSGFFPD 817


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 202/604 (33%), Positives = 306/604 (50%), Gaps = 101/604 (16%)

Query: 136 LLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
           L+     LK+V    ++FD++P R+VI  N MI  Y + G YREG+ +   M +  V PD
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
             T   ++ A +   ++ +GK +H    +  +  +  + N LV MY KCG + EA+ +L 
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEA-------------------------------- 280
             E+   DVV W +LV+GY ++   D+A                                
Sbjct: 201 --EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE 258

Query: 281 -----RRLFDEMVERNLISWTLMI----------------SGMLNQDAEFKYKS------ 313
                + +F +M +++L+SW +MI                SGM     E    S      
Sbjct: 259 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLP 318

Query: 314 -CASIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSEISEKNVY 356
            C    AL  G  +H YI++ ++ I N+ L                A D+F  +  ++V 
Sbjct: 319 ACGDTSALSLGKKIHGYIERKKL-IPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVV 377

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            WT++I+AY  +G    A+ LF +M+++G  PD + F+  L+ACSH GL++EG       
Sbjct: 378 SWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 437

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           +  Y I P+++H  CMVDLLGRAG ++E+  FI  MP+ P+  +W +LL ACR H N  +
Sbjct: 438 TDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDI 497

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
              A   L +  P   G +VLL+NIYAKAGR ++++ IR  ++  GLKK  G S +E   
Sbjct: 498 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 557

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRER 580
            +H F  GD  +P S EIY  L+ +   +++ G                +ET L  H E+
Sbjct: 558 IIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEK 617

Query: 581 LAVAFGLISTSEKTT---IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
           LA+ F L++T E+ +   IRI  NLRICGDCH   K+ SQ+ +REI+IRD  RFH F+ G
Sbjct: 618 LAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFG 677

Query: 638 QCSC 641
            CSC
Sbjct: 678 VCSC 681



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
           V + +   S+ ++  A  +F EI E+NV +   +I +Y   G  ++ I +F  M     K
Sbjct: 79  VKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVK 138

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD  TF  +L ACS  G +  G       ++V  +   +     +V + G+ G L E+  
Sbjct: 139 PDHYTFPCVLKACSCSGNIVIGKKIHGSATKV-GLSSTLFVGNGLVSMYGKCGFLSEARL 197

Query: 448 FITSMPIPPDVSIWSSL-------------LRACRCHQNVKLAEHA 480
            +  M    DV  W+SL             L  CR  ++VK++  A
Sbjct: 198 VLDEMS-RRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDA 242


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 188/573 (32%), Positives = 303/573 (52%), Gaps = 63/573 (10%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
           T L+N    C  ++E   +FD +P+R+V++WN++ SCY + G  ++GL +  +M   GV 
Sbjct: 382 TALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVK 441

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD VTM+S++ A + L+DL+ GK +H F     M     + N L+ +Y KC  + EAQ +
Sbjct: 442 PDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVV 501

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLN-- 304
                I   +V  W  +++ Y  + E ++   +F +M    V+ + I+W+++I G +   
Sbjct: 502 FDL--IPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNS 559

Query: 305 ------------QDAEFK---------YKSCASIGALYHGIWVHVYIKKNQISID----- 338
                       Q   FK          ++C+    L  G  +H Y+ ++    D     
Sbjct: 560 RIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTN 619

Query: 339 ----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                      + L+ ++F  +  K+V+ W ++I A  M G+ ++A+ LF +M  +  KP
Sbjct: 620 ALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKP 679

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D  TF  +LSACSH  LV+EG    +  SR + ++P+ +HY C+VD+  RAG LEE+  F
Sbjct: 680 DSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGF 739

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I  MP+ P    W + L  CR ++NV+LA+ + K L E DP     +V L NI   A   
Sbjct: 740 IQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLW 799

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
            + S+IR  +++ G+ K  G S    G  VH F +GD  N  S++IY  L+E+   ++  
Sbjct: 800 SEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAA 859

Query: 569 GLQ----------------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G +                E+   H E+LAVAFG+++ + ++TIR+  NLRICGDCH+ +
Sbjct: 860 GYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAI 919

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K  S V    IV+RD+ RFH F+ G CSC+D+W
Sbjct: 920 KYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 145/273 (53%), Gaps = 15/273 (5%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  ++E   +FD +P+RDV++WN++ SCY + G  ++GL +  +M  +GV PD VT+  
Sbjct: 188 KCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSC 247

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA + L+DL+ GK +H F  +  M  +  + N LV++Y  C  + EAQ +     +  
Sbjct: 248 ILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDL--MPH 305

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-YKSCASI 317
            +V+ W +L S YV      +   +F EM    +    + +S +L   ++ K  KS  +I
Sbjct: 306 RNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTI 365

Query: 318 G--ALYHGIWVHVYI-------KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
              A+ HG+   V++         N + +   +  +DL   +  +NV  W S+ + Y   
Sbjct: 366 HGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDL---MPHRNVVTWNSLSSCYVNC 422

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           G  QK +++F EM   G KPD VT +++L ACS
Sbjct: 423 GFPQKGLNVFREMVLNGVKPDLVTMLSILHACS 455



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 127/555 (22%), Positives = 235/555 (42%), Gaps = 100/555 (18%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQ 78
           L +  KM +++  AN  P+++  I+    CS + + +    IH  ++   ++ D  +S+ 
Sbjct: 126 LNVFRKMGLNKVKAN--PLTVSSIL--PGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSA 181

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL-------- 130
              F      +  AQ +       ++  WNS+    +  G+PQ+   ++  +        
Sbjct: 182 FVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPD 241

Query: 131 -VTRTVLLNKCGKL--------------------------------------KEVCQLFD 151
            VT + +L+ C  L                                      +E   +FD
Sbjct: 242 PVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFD 301

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
            +P+R+VI+WN++ SCY + G  ++GL +  +MG  GV PD + M S++ A ++L+DL+ 
Sbjct: 302 LMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKS 361

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           GK +H F  +  M     +   LV++Y  C  + EAQ +     +   +VV W +L S Y
Sbjct: 362 GKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDL--MPHRNVVTWNSLSSCY 419

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-YKSCASIG--ALYHGIWVHV 328
           V      +   +F EMV   +    + +  +L+  ++ +  KS   I   A+ HG+   V
Sbjct: 420 VNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDV 479

Query: 329 YIKKNQIS-------IDNIELAYDLFS--EIS---------------EKNVYL------- 357
           ++    +S       +   ++ +DL    E++               EK +Y+       
Sbjct: 480 FVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRD 539

Query: 358 --------WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
                   W+ VI         ++A+++F +M+  G KPD+ T  ++L ACS    +  G
Sbjct: 540 EVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMG 599

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
            +      R +     +     +VD+  + G L  S N    MPI  DV  W++++ A  
Sbjct: 600 KEIHCYVFRHWK-DWDLARTNALVDMYAKCGGLSLSRNVFDMMPI-KDVFSWNTMIFANG 657

Query: 470 CHQNVKLAEHAFKHL 484
            H N K A   F+ +
Sbjct: 658 MHGNGKEALSLFEKM 672



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 9/271 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  ++   ++FD L  RDV++WN++ +CY + G  ++GL +  KMG   V  + +T+ S
Sbjct: 87  KCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSS 146

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++   + L+DL+ GK +H F+    M     + +  V+ Y KC  + EAQ +     +  
Sbjct: 147 ILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDL--MPH 204

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-YKSCASI 317
            DVV W +L S YV      +   +F EMV   +    + +S +L+  ++ +  KS  +I
Sbjct: 205 RDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAI 264

Query: 318 G--ALYHGIWVHVYIKKNQISIDN----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
              AL HG+  +V++    +++      +  A  +F  +  +NV  W S+ + Y   G  
Sbjct: 265 HGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFP 324

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           QK +++F EM   G KPD +   ++L ACS 
Sbjct: 325 QKGLNVFREMGLNGVKPDPMAMSSILPACSQ 355


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 184/544 (33%), Positives = 288/544 (52%), Gaps = 46/544 (8%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            L +K GK+ E   L     + D+ SWN ++  Y      R+ L   S M   G+  DE+T
Sbjct: 1042 LYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEIT 1101

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            + + I A   L +L+ GK +  +  +        + + ++DMY KCG +  A +L G  E
Sbjct: 1102 LATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFG--E 1159

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY--KS 313
            I   D V WTT++SGY+++ + D A  ++  M           +SG+   +  F    K+
Sbjct: 1160 ISRPDEVAWTTMISGYIENGDEDHALSVYHLM----------RVSGVQPDEYTFATLIKA 1209

Query: 314  CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
             + + AL  G  +H  + K   S+D               +++ AY +F ++  + V  W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 359  TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
             +++   A  GH  +A++LF  M+  G +PD+VTFI +LSACSH GL  E Y +     +
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 419  VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
             Y I P+++HY C+VD LGRAG ++E+ N I SMP     S++ +LL ACR   + + A+
Sbjct: 1330 TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAK 1389

Query: 479  HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
                 L   DP +  A+VLL+NIYA + + DD++  R  ++   +KK  G+S I+    V
Sbjct: 1390 RVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKV 1449

Query: 539  HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL-QHRERL 581
            H F   D  +P +  IY  + ++   ++++G                 +E +L  H E+L
Sbjct: 1450 HLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKL 1509

Query: 582  AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
            A+AFGLIST    TIR++ NLR+CGDCHS +K  S++  REIV+RD  RFH F+ G CSC
Sbjct: 1510 AIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSC 1569

Query: 642  RDYW 645
             DYW
Sbjct: 1570 GDYW 1573



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 171/360 (47%), Gaps = 20/360 (5%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            + +K G +    + F   P  D+ISWNTMIS Y    +  E +     +  +G+ PD+ T
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 196  MVSLISARTKLRDLE---MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL- 251
            + S++ A +   + E   +G  +H++  +  +     +   L+D+Y K GK+ EA+ LL 
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057

Query: 252  GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL------ISWTLMISG-MLN 304
            G+Y+    D+  W  ++ GY+KSN+  +A   F  M E  +      ++  +  SG ++N
Sbjct: 1058 GKYDF---DLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLIN 1114

Query: 305  QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364
                 + ++ A      + +WV   +    I   ++  A +LF EIS  +   WT++I+ 
Sbjct: 1115 LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISG 1174

Query: 365  YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            Y   G    A+ ++  M  +G +PD+ TF  L+ A S    +++G       + V  +  
Sbjct: 1175 YIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQI---HANVVKLDY 1231

Query: 425  KMQHY--GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
             + H+    +VD+  + G ++++      M +   V  W+++L     H +V  A + F+
Sbjct: 1232 SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQHGHVDEALNLFR 1290



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 32/290 (11%)

Query: 129 YLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCY-----TSMGMYREGLGLLS 182
           YL    + + +KCG L    Q+FDK  +RD+++WN++++ Y     +S     EG  L  
Sbjct: 647 YLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFG 706

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
            +   G S   +T+  L+        +++ + +H +  +   ++   +   LV++Y K G
Sbjct: 707 LLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYG 766

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL---ISWTLMI 299
            +G+A+ L  +  + E D VLW  ++  YV+++ +DEA R F            S    +
Sbjct: 767 LVGQARLLFDK--MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCV 824

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359
            G +N D     K         H   V  Y  K             +F      N++ W 
Sbjct: 825 IGGVNSDVSNNRKR--------HAEQVKAYAMK-------------MFPFDQGSNIFAWN 863

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
             +  +  AG    AID F  +  +    D VT + +LSA      +D G
Sbjct: 864 KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG 913



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 153/380 (40%), Gaps = 46/380 (12%)

Query: 58   ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
            E +H + +      D  +S  +       G +G A+ +  +  E +  +WN +++  + N
Sbjct: 737  ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN 796

Query: 118  GYPQEVFAIYLYL------------------VTRTVLLNKCGKLKEV----CQLFDKLPN 155
             +  E    +                     V   V  N+    ++V     ++F     
Sbjct: 797  SFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQG 856

Query: 156  RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
             ++ +WN  ++ +   G     +     +    +  D VT+V ++SA     DL++G+ +
Sbjct: 857  SNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQI 916

Query: 216  HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
            H  + +S+      + N L++MY K G +  A+K        E+D++ W T++S Y ++N
Sbjct: 917  HALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--INSPELDLISWNTMISSYAQNN 974

Query: 276  ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH-GIWVHVYIKKNQ 334
               EA   F +++   L      ++ +L      +  S    G  +  G  VHVY  K  
Sbjct: 975  LEMEAICTFRDLLRDGLKPDQFTLASVL------RACSTGDEGEYFTLGSQVHVYAIKCG 1028

Query: 335  ISIDNI--ELAYDLFS---EISEKNVYL----------WTSVIAAYAMAGHAQKAIDLFL 379
            I  D+       DL+S   ++ E    L          W +++  Y  +  ++KA++ F 
Sbjct: 1029 IINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFS 1088

Query: 380  EMEETGTKPDQVTFIALLSA 399
             M E G   D++T    + A
Sbjct: 1089 LMHEMGIPIDEITLATAIKA 1108



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 109/492 (22%), Positives = 193/492 (39%), Gaps = 106/492 (21%)

Query: 58   ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII------ 111
            +R H+ ++T+  + D  ++  +       G L  A+Q+  +  + ++  WNSI+      
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 112  -----ENQL---------------------------------------INGYPQEVFAIY 127
                 EN L                                       ++GY  ++    
Sbjct: 691  ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI-GFE 749

Query: 128  LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
            L L     L+N   K G + +   LFDK+P RD + WN M+  Y       E L   S  
Sbjct: 750  LDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF 809

Query: 185  GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL-FLEESTMKI----SGSLL---NYLVD 236
               G  PD   +  +I       D+   +  H   ++   MK+     GS +   N  + 
Sbjct: 810  HRSGFXPDFSNLHCVIGGVNS--DVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLT 867

Query: 237  MYFKCGKIGEAQ---KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
             +   G+I  A    K L R  I   D V    ++S  V +++ D   ++   +++ +  
Sbjct: 868  EFLHAGQIVAAIDCFKTLLRSTIGH-DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926

Query: 294  SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
                + + ++N               +Y    V VY  +    I++ EL  DL S     
Sbjct: 927  PVVPVSNSLMN---------------MYSKAGV-VYAAEKTF-INSPEL--DLIS----- 962

Query: 354  NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-YDF 412
                W ++I++YA      +AI  F ++   G KPDQ T  ++L ACS G   DEG Y  
Sbjct: 963  ----WNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFT 1015

Query: 413  LSKKSRVYNIKPKMQHYG----CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA- 467
            L  +  VY IK  + +       ++DL  + G ++E A F+       D++ W++++   
Sbjct: 1016 LGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDE-AEFLLHGKYDFDLASWNAIMFGY 1074

Query: 468  CRCHQNVKLAEH 479
             + +++ K  EH
Sbjct: 1075 IKSNKSRKALEH 1086



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 26/202 (12%)

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           + DL++GK  H  +  S       L N L+ MY KCG +  A+++  +    + D+V W 
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSS--DRDLVTWN 681

Query: 266 TLVSGYVKSNERD-----EARRLFDEMVERNLISWTLM---------ISGMLNQDAEFKY 311
           ++++ Y +  +       E  RLF  + E       L          +SG + Q +E  +
Sbjct: 682 SILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFV-QVSETVH 740

Query: 312 KSCASIG----ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
                IG        G  V++Y K   +    +     LF ++ E++  LW  ++ AY  
Sbjct: 741 GYAVKIGFELDLFVSGALVNIYCKYGLVGQARL-----LFDKMPERDAVLWNVMLKAYVE 795

Query: 368 AGHAQKAIDLFLEMEETGTKPD 389
                +A+  F     +G  PD
Sbjct: 796 NSFQDEALRFFSAFHRSGFXPD 817


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 178/544 (32%), Positives = 290/544 (53%), Gaps = 48/544 (8%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            + + C       Q+F  +  ++V+SW  MI+ YT  G++ +  GLL +M  +G+ PD   
Sbjct: 555  MYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFA 614

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            + S++        L+ GK++H +   + M+    + N L++MY  C  + EA+ +     
Sbjct: 615  VTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFD--H 672

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLISWTLMISGMLNQDAEFKYK 312
            +   D++ W TL+ GY ++N  +E+  LF +M+   + N ++ T ++  +          
Sbjct: 673  VTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQFKPNTVTMTCILPAV---------- 722

Query: 313  SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYL 357
              ASI +L  G  +H Y  +     D+               + +A  LF  +++KN+  
Sbjct: 723  --ASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLIS 780

Query: 358  WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
            WT +IA Y M G  + A+ LF +M  +G +PD  +F A+L AC H GL  EG+ F +   
Sbjct: 781  WTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMR 840

Query: 418  RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
            + Y I+PK++HY C+VDLL   G+L+E+  FI SMPI PD SIW SLL  CR H++VKLA
Sbjct: 841  KEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLA 900

Query: 478  EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
            E     + + +P N G +VLLANIYA+A R + + +++ K+   GL++  G S IE  G 
Sbjct: 901  EKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGK 960

Query: 538  VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQETSLQHRERL 581
            VH F + +  +P    I   L+ +   ++++G                  E    H  +L
Sbjct: 961  VHVFIADNRNHPEWNRIAEFLDHVARRMREEGHDPKKKYSLMGANDAVHDEALCGHSSKL 1020

Query: 582  AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
            AV FG++   E   IR+  N ++C  CH   K  S++ NREI++RD+ RFH F+GG+CSC
Sbjct: 1021 AVTFGVLHLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHHFEGGRCSC 1080

Query: 642  RDYW 645
            R ++
Sbjct: 1081 RGHF 1084



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 177/395 (44%), Gaps = 60/395 (15%)

Query: 72  DPQISTQVFEFLVFTGDLGYAQQIIRQ----GDEPE----------IKIWNSIIENQLIN 117
           D ++ T +       GD      + RQ    G  P+          I    SI E ++I+
Sbjct: 162 DVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIH 221

Query: 118 GYPQ-----EVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG 172
           G  +     E  A+   L+    L ++CG +++  Q+FD +  RD ISWN+ IS Y S G
Sbjct: 222 GLLEKLGLGEACAVANALIA---LYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNG 278

Query: 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF---------LEEST 223
            +   + L SKM +EG     VT++S++ A  +L    +GK +H +         LE   
Sbjct: 279 WHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQ 338

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
             I  +L + LV MY KCG +G A+++       + +V +W  ++ GY K+ E +E+  L
Sbjct: 339 SGIDEALGSKLVFMYVKCGDMGSARRVFDAMP-SKGNVHVWNLIMGGYAKAAEFEESLLL 397

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV--------------- 328
           F++M E  +      +S +L         SCA  G + HG  V +               
Sbjct: 398 FEQMHELGITPDEHALSCLLKC---ITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISF 454

Query: 329 YIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
           Y K N   IDN  L +D    +  ++   W SVI+     G   +AI+LF+ M   G + 
Sbjct: 455 YAKSNM--IDNAVLVFD---RMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHEL 509

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           D  T +++L AC+        Y F+ +    Y++K
Sbjct: 510 DSTTLLSVLPACAR-----SHYWFVGRVVHGYSVK 539



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 139/304 (45%), Gaps = 42/304 (13%)

Query: 139 KCGKLKEVCQLFDKLPNR--DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           KCG L     +FD++P R  DV  W +++S Y   G ++EG+ L  +M   GVSPD   +
Sbjct: 142 KCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAV 201

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
             ++     L  +  G+ +H  LE+  +  + ++ N L+ +Y +CG + +A ++     +
Sbjct: 202 SCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFD--SM 259

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
              D + W + +SGY  +   D A  LF +M        ++ +  +L   AE  ++    
Sbjct: 260 HARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFE---L 316

Query: 317 IGALYHG-------IW-----------------VHVYIKKNQISIDNIELAYDLFSEISE 352
           +G + HG       +W                 V +Y+K       ++  A  +F  +  
Sbjct: 317 VGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVK-----CGDMGSARRVFDAMPS 371

Query: 353 K-NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS-----ACSHGGLV 406
           K NV++W  ++  YA A   ++++ LF +M E G  PD+     LL      +C+  GLV
Sbjct: 372 KGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLV 431

Query: 407 DEGY 410
             GY
Sbjct: 432 AHGY 435



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 126/266 (47%), Gaps = 26/266 (9%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD++P++D ISWN++IS  TS G+  E + L  +M  +G   D  T++S++ A  +   
Sbjct: 467 VFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHY 526

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
             +G+ +H +  ++ +    SL N L+DMY  C       ++     + + +VV WT ++
Sbjct: 527 WFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIF--RNMAQKNVVSWTAMI 584

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           + Y ++   D+   L  EMV   +      ++ +L+  A  +        +L  G  VH 
Sbjct: 585 TSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDE--------SLKQGKSVHG 636

Query: 329 YIKKNQ---------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           Y  +N                ++  N+E A  +F  ++ K++  W ++I  Y+    A +
Sbjct: 637 YAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANE 696

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSA 399
           +  LF +M     KP+ VT   +L A
Sbjct: 697 SFSLFSDM-LLQFKPNTVTMTCILPA 721



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 126/288 (43%), Gaps = 42/288 (14%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLN-YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           R LE  +  H  +   T  I GS+L   LV  Y KCG +G A+ +         DV +WT
Sbjct: 108 RSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWT 167

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
           +L+S Y K+ +  E   LF +M    +      +S +L        K  AS+G++  G  
Sbjct: 168 SLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVL--------KCIASLGSITEGEV 219

Query: 326 VHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           +H  ++K       ++ N           +E A  +F  +  ++   W S I+ Y   G 
Sbjct: 220 IHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGW 279

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM---- 426
             +A+DLF +M   GT+   VT +++L AC+     + G++ + K    Y++K  +    
Sbjct: 280 HDRAVDLFSKMWSEGTEISSVTVLSVLPACA-----ELGFELVGKVVHGYSMKSGLLWDL 334

Query: 427 --------QHYGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
                   +  G  +V +  + G +  +     +MP   +V +W+ ++
Sbjct: 335 ESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIM 382


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 186/573 (32%), Positives = 302/573 (52%), Gaps = 62/573 (10%)

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           +WN  + N L++ Y                  +K  ++ E  +LF ++P  D IS+N +I
Sbjct: 272 VWNVFVANALLDFY------------------SKHDRIVEARKLFYEMPEVDGISYNVLI 313

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           +C    G   E L L  ++        +    +L+S      +LEMG+ +H      T  
Sbjct: 314 TCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHS-QAIVTDA 372

Query: 226 ISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
           IS  L+ N LVDMY KC K GEA ++    ++     V WT L+SGYV+    ++  +LF
Sbjct: 373 ISEVLVGNSLVDMYAKCDKFGEANRIFA--DLAHQSSVPWTALISGYVQKGLHEDGLKLF 430

Query: 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI--------- 335
            EM    + + +   + +L        ++CA++ +L  G  +H  I ++           
Sbjct: 431 VEMHRAKIGADSATYASIL--------RACANLASLTLGKQLHSRIIRSGCLSNVFSGSA 482

Query: 336 ------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                    +I+ A  +F E+  +N   W ++I+AYA  G    A+  F +M  +G +P+
Sbjct: 483 LVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPN 542

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            V+F+++L ACSH GLV+EG  + +  ++VY ++P+ +HY  MVD+L R+G  +E+   +
Sbjct: 543 SVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLM 602

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA-HVLLANIYAKAGRL 508
             MP  PD  +WSS+L +CR H+N +LA  A   L     L D A +V ++NIYA AG  
Sbjct: 603 ARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEW 662

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
           D + +++  LR+ G++K   YS +E     H F++ D  +P ++EI   L+E+E  +++Q
Sbjct: 663 DSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQ 722

Query: 569 GLQ----------------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G +                E+   H ER+A+AF LIST + + I ++ NLR C DCH+ +
Sbjct: 723 GYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAI 782

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           KV S++ NREI +RD+ RFH F  G CSC+DYW
Sbjct: 783 KVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 172/370 (46%), Gaps = 13/370 (3%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCG--KLKEVCQLFDKLPNRDVISWNTM 164
           + S+ E   ++G+  +V      +V  ++L + C    L   C LF  +  +D +++N +
Sbjct: 152 FESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNAL 211

Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
           ++ Y+  G   + + L  KM   G  P E T  ++++A  ++ D+E G+ +H F+ +   
Sbjct: 212 LTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNF 271

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
             +  + N L+D Y K  +I EA+KL   YE+ EVD + +  L++    +   +E+  LF
Sbjct: 272 VWNVFVANALLDFYSKHDRIVEARKLF--YEMPEVDGISYNVLITCCAWNGRVEESLELF 329

Query: 285 DEM----VERNLISWTLMIS---GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337
            E+     +R    +  ++S     LN +   +  S A +      + V   +       
Sbjct: 330 RELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKC 389

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
           D    A  +F++++ ++   WT++I+ Y   G  +  + LF+EM       D  T+ ++L
Sbjct: 390 DKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASIL 449

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
            AC++   +  G    S+  R   +         +VD+  + G ++E+      MP+   
Sbjct: 450 RACANLASLTLGKQLHSRIIRSGCLSNVFSG-SALVDMYAKCGSIKEALQMFQEMPVRNS 508

Query: 458 VSIWSSLLRA 467
           VS W++L+ A
Sbjct: 509 VS-WNALISA 517



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 120/523 (22%), Positives = 206/523 (39%), Gaps = 63/523 (12%)

Query: 57  FERIHSHLITTNLMRDPQISTQVFEFLVFT----GDLGYAQQIIRQGDEPEIKIWNSIIE 112
           F+ + + +I T    DP  +T  F F V T    GDLG A+++    DE   K  N I  
Sbjct: 26  FQHVDASMIKTGF--DP--NTCRFNFQVQTHLQRGDLGAARKLF---DEMPHK--NVIST 76

Query: 113 NQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG 172
           N +I GY                   K G L     LFD +  R V++W  +I  Y    
Sbjct: 77  NTMIMGYL------------------KSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHN 118

Query: 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
            + E   L + M   G+ PD +T+ +L+S  T+   +     +H  + +     +  + N
Sbjct: 119 RFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCN 178

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE--- 289
            L+D Y K   +G A  L     + E D V +  L++GY K     +A  LF +M +   
Sbjct: 179 SLLDSYCKTRSLGLACHLFK--HMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGF 236

Query: 290 --RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELA 343
                    ++ +G+   D EF  +   S     + +W +V++    +      D I  A
Sbjct: 237 RPSEFTFAAVLTAGIQMDDIEFG-QQVHSFVVKCNFVW-NVFVANALLDFYSKHDRIVEA 294

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             LF E+ E +   +  +I   A  G  +++++LF E++ T     Q  F  LLS  ++ 
Sbjct: 295 RKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANS 354

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
             ++ G    S ++ V +   ++     +VD+  +     E+      +     V  W++
Sbjct: 355 LNLEMGRQIHS-QAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVP-WTA 412

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           L+     +    L E   K   E            A I A +     + R    L  + L
Sbjct: 413 LISG---YVQKGLHEDGLKLFVEMHR---------AKIGADSATYASILRACANLASLTL 460

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
            KQL   +I  G   + F+   +      ++Y     I+  LQ
Sbjct: 461 GKQLHSRIIRSGCLSNVFSGSALV-----DMYAKCGSIKEALQ 498


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 186/555 (33%), Positives = 300/555 (54%), Gaps = 51/555 (9%)

Query: 128 LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
           L L    +LLN   K   L +  +LFD++P R+ IS+ T+I  Y     + E + L  ++
Sbjct: 71  LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
             E V P++ T  S++ A   +  L +G  +H  + +  +     + N L+D+Y KCG++
Sbjct: 131 HRE-VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRM 189

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
             + +L    E    + V W T++ G+V+  + ++A RLF  M+E  + +  +  S  L 
Sbjct: 190 ENSMELFA--ESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSAL- 246

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQI------------------SIDNIELAYDL 346
                  ++CAS+ AL  G+ +H    K                     SI +  L +DL
Sbjct: 247 -------RACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDL 299

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
            ++  E +   W ++I+ Y+M G  ++A+ +F +M+ET  KPD++TF+ +LSAC++ GL+
Sbjct: 300 MNKQDEVS---WNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLL 356

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           D+G  + +   + + I+P ++HY CMV LLGR GHL+++   I  +P  P V +W +LL 
Sbjct: 357 DQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLG 416

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           AC  H +++L   + + + E +P +   HVLL+N+YA A R D+++ +R  ++  G+KK+
Sbjct: 417 ACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKE 476

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------- 570
            G S IE  G VH FT GD  +P    I  ML  + M  ++ G                 
Sbjct: 477 PGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEK 536

Query: 571 QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           +     H ERLA++FG+I T   + IRI+ NLRIC DCH+ +K  S+V  REIV+RD  R
Sbjct: 537 ERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINR 596

Query: 631 FHRFQGGQCSCRDYW 645
           FH FQ G CSC DYW
Sbjct: 597 FHHFQEGLCSCGDYW 611



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 118/300 (39%), Gaps = 60/300 (20%)

Query: 37  VCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           V P       V ++C++++      +IH H+I   L  D  +S  + +     G +  + 
Sbjct: 134 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSM 193

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV------------------ 135
           ++  +        WN++I   +  G  ++   ++L ++   V                  
Sbjct: 194 ELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLA 253

Query: 136 -----------------------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMIS 166
                                        +  KCG +K+   +FD +  +D +SWN MIS
Sbjct: 254 ALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMIS 313

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL-FLEESTMK 225
            Y+  G+ RE L +  KM    V PD++T V ++SA      L+ G+      +++  ++
Sbjct: 314 GYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIE 373

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV----DVVLWTTLVSGYVKSNERDEAR 281
                   +V +  + G + +A KL     IDE+     V++W  L+   V  N+ +  R
Sbjct: 374 PCIEHYTCMVWLLGRGGHLDKAVKL-----IDEIPFQPSVMVWRALLGACVIHNDIELGR 428


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 292/534 (54%), Gaps = 38/534 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG-AEGVSPDEVTMVSLISARTKL 206
           ++FD + +R +  WN MI+ Y+     +E L L   M  + G+  +  TM  ++ A  + 
Sbjct: 272 RVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRS 331

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
                 + +H F+ +  +     + N L+DMY + GKI  A ++ G+ E  + D+V W T
Sbjct: 332 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME--DRDLVTWNT 389

Query: 267 LVSGYVKSNERDEARRLFDEM--VERNLISWTLMISGMLNQDAEFK-YKSCASIGALYHG 323
           +++GYV S   ++A  L  +M  +ER +      +S   N         SCA++ AL  G
Sbjct: 390 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 449

Query: 324 IWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
             +H Y  KN ++ D                ++++  +F +I +KNV  W  +I AY M 
Sbjct: 450 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMH 509

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G+ Q+AIDL   M   G KP++VTFI++ +ACSH G+VDEG          Y ++P   H
Sbjct: 510 GNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDH 569

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           Y C+VDLLGRAG ++E+   +  MP   +    WSSLL A R H N+++ E A ++L + 
Sbjct: 570 YACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQL 629

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P     +VLLANIY+ AG  D  + +R  +++ G++K+ G S IE G  VHKF +GD  
Sbjct: 630 EPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSS 689

Query: 548 NPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLISTS 591
           +P SE++   L  +   ++++G + +TS                 H E+LA+AFG+++TS
Sbjct: 690 HPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTS 749

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             T IR+  NLR+C DCH   K  S++ +REI++RD  RFHRF+ G CSC DYW
Sbjct: 750 PGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 164/377 (43%), Gaps = 54/377 (14%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           T   +  K GKL     L      RD+++WNT++S         E L  L +M  EGV P
Sbjct: 154 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 213

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           DE T+ S++ A + L  L  GK LH + L+  ++  +  + + LVDMY  C      Q L
Sbjct: 214 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC-----KQVL 268

Query: 251 LGRYEID---EVDVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLNQD 306
            GR   D   +  + LW  +++GY ++    EA  LF  M E   L++ +  ++G++   
Sbjct: 269 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV--- 325

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +C   GA      +H ++ K  +  D                I++A  +F ++ 
Sbjct: 326 -----PACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME 380

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-----------ETGTKPDQVTFIALLSAC 400
           ++++  W ++I  Y  + H + A+ L  +M+               KP+ +T + +L +C
Sbjct: 381 DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSC 440

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPP 456
           +    + +G     K+   Y IK  +         +VD+  + G L+ S      +P   
Sbjct: 441 AALSALAKG-----KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QK 494

Query: 457 DVSIWSSLLRACRCHQN 473
           +V  W+ ++ A   H N
Sbjct: 495 NVITWNVIIMAYGMHGN 511



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 186/452 (41%), Gaps = 95/452 (21%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG    V ++FD++  R+ +SWN++IS   S   +   L     M  E V P   T
Sbjct: 55  LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 114

Query: 196 MVSLISARTKL---RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           +VS+++A + L     L MGK +H +      +++  ++N LV MY K GK+  ++ LLG
Sbjct: 115 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLG 173

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
            +     D+V W T++S   ++ +  EA     EMV   +      IS +L         
Sbjct: 174 SF--GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL--------P 223

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNVY 356
           +C+ +  L  G  +H Y  KN    +N  +   L                F  + ++ + 
Sbjct: 224 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIG 283

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACS-----------HGG 404
           LW ++IA Y+   H ++A+ LF+ MEE+ G   +  T   ++ AC            HG 
Sbjct: 284 LWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 343

Query: 405 LVDEGYD--------FLSKKSRVYNIKPKMQHYGCMVD---------------------- 434
           +V  G D         +   SR+  I   M+ +G M D                      
Sbjct: 344 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 403

Query: 435 --LLGRAGHLEESA-----------NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
             LL +  +LE              N IT M I P  +  S+L +    H       +A 
Sbjct: 404 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA------YAI 457

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           K+   TD     A   L ++YAK G L  MSR
Sbjct: 458 KNNLATDVAVGSA---LVDMYAKCGCL-QMSR 485



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 28/233 (12%)

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI-SGSLLNYLVDMYFKCGKIGE 246
           G+ PD     +L+ A   L+D+E+GK +H  + +    + S ++ N LV++Y KCG  G 
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 64

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
             K+  R  I E + V W +L+S      + + A   F  M++ N+   +  +  ++   
Sbjct: 65  VYKVFDR--ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT-- 120

Query: 307 AEFKYKSCASIG---ALYHGIWVHVY-IKKNQIS---IDNIELAYDLFSEISEKNVYL-- 357
                 +C+++     L  G  VH Y ++K +++   I+ +   Y    +++   V L  
Sbjct: 121 ------ACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGS 174

Query: 358 --------WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
                   W +V+++        +A++   EM   G +PD+ T  ++L ACSH
Sbjct: 175 FGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSH 227



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L+   ++FD++P ++VI+WN +I  Y   G  +E + LL  M  +GV P+EVT +S
Sbjct: 477 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 536

Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           + +A +    ++ G +  ++   +  ++ S      +VD+  + G+I EA +L+     D
Sbjct: 537 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 596

Query: 258 EVDVVLWTTLVSG 270
                 W++L+  
Sbjct: 597 FNKAGAWSSLLGA 609


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 201/644 (31%), Positives = 323/644 (50%), Gaps = 95/644 (14%)

Query: 64  LITTNLMRDPQISTQVFEF------LVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           L+ ++ +  P    Q+F         V +GD+  A ++        ++  N+I  N L+ 
Sbjct: 46  LVRSDYLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHG-----MRAKNTITWNSLLI 100

Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
           G  ++                   ++ E  QLFD++P  D  S+N M+SCY     + + 
Sbjct: 101 GISKDP-----------------SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKA 143

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
                +M  +    D  +  ++I+   +  ++E  + L      S M+ +    N ++  
Sbjct: 144 QSFFDRMPFK----DAASWNTMITGYARRGEMEKARELFY----SMMEKNEVSWNAMISG 195

Query: 238 YFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISW 295
           Y +CG + +A      +++  V  VV WT +++GY+K+ + + A  +F +M V +NL++W
Sbjct: 196 YIECGDLEKASHF---FKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTW 252

Query: 296 TLMISGML-NQDAEFKYK----------------------SCASIGALYHGIWVHVYIKK 332
             MISG + N   E   K                       C+ + AL  G  +H  + K
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSK 312

Query: 333 NQISIDNIEL---------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           + +  D   L               A+ LF  + +K+V  W ++I+ YA  G+A KA+ L
Sbjct: 313 STLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCL 372

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F EM +   +PD +TF+A+L AC+H GLV+ G  +     R Y ++P+  HY CMVDLLG
Sbjct: 373 FREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLG 432

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAG LEE+   I SMP  P  +++ +LL ACR H+NV+LAE A + L + +  N   +V 
Sbjct: 433 RAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQ 492

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           LANIYA   R +D++R+R ++++  + K  GYS IE    VH F S D  +P  + I+  
Sbjct: 493 LANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKK 552

Query: 558 LN-------------EIEMTL---QQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNN 601
           L              E+E  L   +++  ++  L H E+LAVAFG I   + + I++  N
Sbjct: 553 LKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKN 612

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LRICGDCH  +K  S++  REI++RD  RFH F+ G CSC DYW
Sbjct: 613 LRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 184/549 (33%), Positives = 288/549 (52%), Gaps = 52/549 (9%)

Query: 135  VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT-SMGMYREGLGLLSKMGAEGVSPDE 193
             L  +CG +KE  + F  + + D +SWN++I     S     E +     M   G  P+ 
Sbjct: 533  ALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNR 592

Query: 194  VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            VT +++++A + L   E+GK +H  + +  +    ++ N L+  Y KCG +G  + +  R
Sbjct: 593  VTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSR 652

Query: 254  YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFK-- 310
               D  D V W +++SGY+            +E++ + + + W +M  G       F   
Sbjct: 653  MS-DRQDEVSWNSMISGYIH-----------NELLPKAMDMVWFMMQKGQRLDGFTFATV 700

Query: 311  YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNV 355
              +CA++  L  G+ VH    +  +  D                I+ A   F  +  +N+
Sbjct: 701  LSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNL 760

Query: 356  YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
            Y W S+I+ YA  GH  K++DLF +M+  G  PD VTF+ +LSACSH GLV+EG+     
Sbjct: 761  YSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDS 820

Query: 416  KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH---Q 472
             S +Y + P+M+H+ CMVDLLGR G L +  +F+  MP+ P+V IW ++L AC C    +
Sbjct: 821  MSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGAC-CRANGR 879

Query: 473  NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
            N  L   A + L E +P N   ++LL+N+YA  G+ DD+++ R+ +R   +KK+ G S +
Sbjct: 880  NTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWV 939

Query: 533  EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ--------------- 576
                 VH F +GD  +P  + IY  L E+   ++  G + ET                  
Sbjct: 940  TMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSY 999

Query: 577  HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
            H E++AVAF L   S K  IRI+ NLR+CGDCHS  K  SQ+  R+IV+RD+ RFH F+ 
Sbjct: 1000 HSEKIAVAFVLTRPS-KMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFEN 1058

Query: 637  GQCSCRDYW 645
            G+CSC D+W
Sbjct: 1059 GKCSCGDFW 1067



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 166/381 (43%), Gaps = 33/381 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + + C +F  + N+D ++WN+MI+       + E +    +M    + P   TM+S
Sbjct: 436 KCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMIS 495

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            +S+   L  + +G+ LH    +  + +  S+ N L+ +Y +CG + E QK      + +
Sbjct: 496 ALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSL--MLD 553

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF--KYKSCAS 316
            D V W +L+     S    E   L  E VE  L+   +M +G       F     + +S
Sbjct: 554 YDHVSWNSLIGALADS----EPSML--EAVESFLV---MMRAGWDPNRVTFITILAAVSS 604

Query: 317 IGALYHGIWVHVYIKKNQISIDNI-------------ELAY--DLFSEISEKNVYL-WTS 360
           +     G  +H  + K  ++ D               ++ Y  ++FS +S++   + W S
Sbjct: 605 LSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNS 664

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+ Y       KA+D+   M + G + D  TF  +LSAC+    ++ G +      R  
Sbjct: 665 MISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRAC 724

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            ++  +     +VD+  + G ++ ++ F   MP   ++  W+S++     H +   +   
Sbjct: 725 -LESDIVIGSALVDMYAKCGRIDYASRFFEMMP-ARNLYSWNSMISGYARHGHGTKSLDL 782

Query: 481 FKHLTETDPLNDGAHVLLANI 501
           F  +    PL D  HV    +
Sbjct: 783 FAQMKLQGPLPD--HVTFVGV 801



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 110/489 (22%), Positives = 185/489 (37%), Gaps = 80/489 (16%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           SC S D  E +H  L     + D  +   +       GDLG  +++  +     +  W+ 
Sbjct: 86  SCGSKDA-EELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSC 144

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLN--KCGKLKEVCQ------------------- 148
           +I     N  P E   ++  +V+   + N    G +   CQ                   
Sbjct: 145 LISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSK 204

Query: 149 -----------------------------LFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                                         FD +  R+++S N+MIS Y   G       
Sbjct: 205 TQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFD 264

Query: 180 LLSKMGAE----GVSPDEVTMVSLISARTKLRD--LEMGKNLHLFLEESTMKISGSLLNY 233
           + S M  E    G+ P+E T  SLISA   L +  L + + L   +E+S       + + 
Sbjct: 265 IFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSA 324

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM---VER 290
           LV  + K G IG A+ +  +  +   +VV    L+ G V+    +EA  LF EM   VE 
Sbjct: 325 LVSGFAKAGSIGYAKNIFQK--MSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVEL 382

Query: 291 NLISWTLMISGMLNQDAEFK-YKSCASIGALYHGIWVHVYIKKNQISIDN---------- 339
           N  S+ ++++       EF   ++    G+  H   +   +   QI+I N          
Sbjct: 383 NPNSYMIILTAF----PEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCG 438

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            I  A  +F  +  K+   W S+I          +A+  F EM  T   P   T I+ LS
Sbjct: 439 AINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALS 498

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           +C+  G +  G     +  ++  +   +     ++ L G  G+++E     + M     V
Sbjct: 499 SCASLGWISVGEQLHCEGLKL-GLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHV 557

Query: 459 SIWSSLLRA 467
           S W+SL+ A
Sbjct: 558 S-WNSLIGA 565



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 165/382 (43%), Gaps = 42/382 (10%)

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVL-LNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
           ++  QL+    +  F   LY+ +  V    K G +     +F K+  R+V+S N +I   
Sbjct: 301 VLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGL 360

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN----LHLFLEESTM 224
                  E + L  +M  + V  +  + + +++A  +   LE GK     +H FL  S +
Sbjct: 361 VRQKRGEEAVELFMEM-KDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGL 419

Query: 225 -KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                ++ N L++MY KCG I +A  +     +D  D V W ++++G  ++ +  EA + 
Sbjct: 420 LNAQIAIGNGLINMYAKCGAINDACVVFRL--MDNKDSVTWNSMITGLDQNKQFLEAVKT 477

Query: 284 FDEMVERNLISWTL-MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----NQISID 338
           F EM    L      MIS +          SCAS+G +  G  +H    K      +S+ 
Sbjct: 478 FQEMRRTELYPSNFTMISAL---------SSCASLGWISVGEQLHCEGLKLGLDLDVSVS 528

Query: 339 NIELAY-----------DLFSEISEKNVYLWTSVIAAYAMAGHAQ-KAIDLFLEMEETGT 386
           N  LA              FS + + +   W S+I A A +  +  +A++ FL M   G 
Sbjct: 529 NALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGW 588

Query: 387 KPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            P++VTFI +L+A S   L + G   +  + K+    N+         ++   G+ G + 
Sbjct: 589 DPNRVTFITILAAVSSLSLHELGKQIHALVLKR----NVAADTAIENALLACYGKCGDMG 644

Query: 444 ESANFITSMPIPPDVSIWSSLL 465
              N  + M    D   W+S++
Sbjct: 645 YCENIFSRMSDRQDEVSWNSMI 666


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 192/562 (34%), Positives = 306/562 (54%), Gaps = 64/562 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           GK++    LF +  + D+  +   I+  +  G+  +   L  ++ +  ++P+E T  S++
Sbjct: 76  GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSIL 135

Query: 201 -SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            S  TK      GK +H  + +  + +   +   LVD+Y K G +  AQK+  R  + E 
Sbjct: 136 KSCSTK-----SGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDR--MPER 188

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-----------MLNQD-- 306
            +V  T +++ Y K    + AR LFD M ER+++SW +MI G           ML Q   
Sbjct: 189 SLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLL 248

Query: 307 AEFKYK-----------SCASIGALYHGIWVHVYIKKNQISID---------------NI 340
           A+ K K           +C+ IGAL  G W+HV++  ++I ++               ++
Sbjct: 249 ADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSL 308

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE-TGTKPDQVTFIALLSA 399
           E A  +F++   K++  W ++I  YAM G++Q A+ LF EM+  TG +P  +TFI  L A
Sbjct: 309 EEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQA 368

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           C+H GLV+EG        + Y IKPK++HYGC+V LLGRAG L+ +   I +M +  D  
Sbjct: 369 CAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSV 428

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           +WSS+L +C+ H    L +   ++L   +  N G +VLL+NIYA  G  + ++++R  ++
Sbjct: 429 LWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMK 488

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------- 569
           + G+ K+ G S IE    VH+F +GD  +  S+EIY ML ++   ++  G          
Sbjct: 489 EKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLH 548

Query: 570 -LQET----SLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
            L+ET    SLQ H ERLA+A+GLIST   + ++I  NLR+C DCH+  K+ S++  R+I
Sbjct: 549 DLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKI 608

Query: 624 VIRDNGRFHRFQGGQCSCRDYW 645
           V+RD  RFH F  G CSC D+W
Sbjct: 609 VMRDRNRFHHFSDGSCSCDDFW 630



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 164/341 (48%), Gaps = 55/341 (16%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           +SCS+    + IH+H++   L  DP ++T + +     GD+  AQ++  +   PE  + +
Sbjct: 136 KSCST-KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDR--MPERSLVS 192

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
           S     +I  Y ++                  G ++    LFD++  RD++SWN MI  Y
Sbjct: 193 S---TAMITCYAKQ------------------GNVEAARALFDRMCERDIVSWNVMIDGY 231

Query: 169 TSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
           +  G   + L L  K+ A+G   PDE+T+V+ +SA +++  LE G+ +H+F+  S ++++
Sbjct: 232 SQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLN 291

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             +   L+DMY KCG + EA  +L   +    D+V W  +++GY       +A RLFDEM
Sbjct: 292 VKVCTALIDMYSKCGSLEEA--VLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEM 349

Query: 288 VERNLISWTLMISGMLNQDAEF--KYKSCASIGALYHGIWV-----HVYIKKNQIS---- 336
                      I+G+   D  F    ++CA  G +  GI +       Y  K +I     
Sbjct: 350 QG---------ITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGC 400

Query: 337 -------IDNIELAYDLFSEIS-EKNVYLWTSVIAAYAMAG 369
                     ++ AY++   ++ E +  LW+SV+ +  + G
Sbjct: 401 LVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHG 441


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 206/640 (32%), Positives = 317/640 (49%), Gaps = 80/640 (12%)

Query: 70  MRDPQIST---------QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII--------- 111
           + +P IS+         Q+ + L   G L  A +++ Q   P  + +  +I         
Sbjct: 34  LNNPSISSGAGAKISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSL 93

Query: 112 -------ENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNT 163
                   + L NG  Q+ F     L T+ + + +  G +    ++FDK   R +  WN 
Sbjct: 94  SDALRVHRHILDNGSDQDPF-----LATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNA 148

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVT----MVSLISARTKLRDLEMGKNLHLFL 219
           +    T  G   E LGL  KM   GV  D  T    + + +++   +  L  GK +H  L
Sbjct: 149 LFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHL 208

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
                     ++  LVDMY + G +  A  + G   +   +VV W+ +++ Y K+ +  E
Sbjct: 209 TRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR--NVVSWSAMIACYAKNGKAFE 266

Query: 280 ARRLFDEMVERNLISW---TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
           A R F EM+     S      M+S +         ++CAS+ AL  G  +H YI +  + 
Sbjct: 267 ALRTFREMMRETKDSSPNSVTMVSVL---------QACASLAALEQGKLIHGYILRRGLD 317

Query: 337 ---------------IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
                             +E+   +F  + +++V  W S+I++Y + G+ +KAI +F EM
Sbjct: 318 SILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEM 377

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
              G  P  VTF+++L ACSH GLV+EG        R + IKP+++HY CMVDLLGRA  
Sbjct: 378 LANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANR 437

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           L+E+A  +  M   P   +W SLL +CR H NV+LAE A + L   +P N G +VLLA+I
Sbjct: 438 LDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADI 497

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           YA+A   D++ R++  L   GL+K  G   +E    ++ F S D FNP  E+I+  L ++
Sbjct: 498 YAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKL 557

Query: 562 EMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRIC 605
              ++++G                 +   L H E+LA+AFGLI+TS+   IRI  NLR+C
Sbjct: 558 AEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLC 617

Query: 606 GDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            DCH F K  S+   +EI++RD  RFHRF+ G CSC DYW
Sbjct: 618 EDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 189/571 (33%), Positives = 297/571 (52%), Gaps = 71/571 (12%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            KCG LK+  +LFD LP +D ++W T++S      +  +   +   +  EG+ PD     
Sbjct: 54  GKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFS 113

Query: 198 SLISARTKLRDL--EMGKNLHL------FLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
           SLI A   L  +  ++GK LH       F E+  +K S      LVDMY K       + 
Sbjct: 114 SLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSS------LVDMYAKFELPDYGRA 167

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----Q 305
           +     I E+  + WT ++SGY +S  + EA  LF E   +NL +WT +ISG++      
Sbjct: 168 VFD--SIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNAN 225

Query: 306 DAEFKY--------------------KSCASIGALYHGIWVH-----------VYIKKNQ 334
           DA + +                     +CA+      G  VH           ++I    
Sbjct: 226 DALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNAL 285

Query: 335 ISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           + +     ++  A  +F E+  K+V  WTS+I   A  G A++A+ L+ +M   G KP++
Sbjct: 286 VDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNE 345

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           VTF+ L+ ACSH GLV +G          + I+P +QHY C++DL  R+GHL+E+ N I 
Sbjct: 346 VTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIR 405

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
           +MP+ PD   W++LL AC+ H N K+A     HL +  P +  +++LL+NIYA AG  ++
Sbjct: 406 TMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWEN 465

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL 570
           +S +R  +    +KK  GYS ++ G     F +G+   P  +EI  ++ +++  ++++G 
Sbjct: 466 VSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGY 525

Query: 571 -------------QETSLQ---HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                        QE   Q   H ERLA+A+GL+     TTIRIV NLR+CGDCH+ +K+
Sbjct: 526 VPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKL 585

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S + +REI +RD  R+H F+ G+CSC D+W
Sbjct: 586 ISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 99/248 (39%), Gaps = 59/248 (23%)

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           + K LH  + +S +         L+D Y KCG + +A KL     + + D V W T++S 
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFD--ALPQQDHVAWATVLSA 83

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY--HGIWVHV 328
              SN   +A  +   ++   L     + S ++        K+CA++G+++   G  +H 
Sbjct: 84  CNLSNLPHKAFSISLPILHEGLQPDHFVFSSLI--------KACANLGSVHVKLGKQLHA 135

Query: 329 -----------YIKKNQISI-------DNIELAYDLFSEISE------------------ 352
                       +K + + +       D     +D   E+S                   
Sbjct: 136 RFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLE 195

Query: 353 ----------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-PDQVTFIALLSACS 401
                     KN+Y WT++I+    +G+A  A+ LF+EM   G    D +   +++ AC+
Sbjct: 196 ALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACA 255

Query: 402 HGGLVDEG 409
           +  + + G
Sbjct: 256 NSAVRELG 263


>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
          Length = 1056

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 290/553 (52%), Gaps = 56/553 (10%)

Query: 138  NKCGKLKEVCQLFDKLPNRDV------ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
            ++ G L+   QL D+ P           ++N++IS      +      L  +M A  V  
Sbjct: 515  SRLGCLRLAHQLLDETPIESTSHTTLRTAFNSLISGCARHSLPVACFALFRRMRAIAVRF 574

Query: 192  DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
            D VT+++L+ A      L +   +H    +  +    S+ N L+  Y + G  G A   L
Sbjct: 575  DAVTLLALVPAAP----LSVVPQVHALAAQVGLATETSVANCLMSTYARGGAFGAA---L 627

Query: 252  GRYEIDEV-----DVVLWTTLVSGYVKSNERDEARRLFDEM-------VERNLISWTLMI 299
             R   DE+     D+V W  ++S + ++    +A  L+  M       VE + ++    I
Sbjct: 628  ARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVT----I 683

Query: 300  SGMLNQDAEFKYKSCASIGALY-----HGIWVHVYIKKNQISI----DNIELAYDLFSEI 350
             G+L+  A    +        Y      G   +V +    I+      ++  A  LF E+
Sbjct: 684  VGVLSSAAHLGARGVGFDAEHYVVQRLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEM 743

Query: 351  SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
              K++  WT++I  + M G+   A+ LF  M   G  PD V  + +LSACSH GL DEG 
Sbjct: 744  PAKSIVSWTALITGHGMHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGR 803

Query: 411  DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
             + S    VY ++P ++HY C+VDLLGRAG LEE+   I+SMP+P D ++W +LL AC+ 
Sbjct: 804  MYFSTMESVYKLRPTLEHYTCIVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKI 863

Query: 471  HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
            H+NV++ E AF  + E +P N G +VL++NIY   G+LD ++R+R  +R  GLKK+ G S
Sbjct: 864  HKNVEIGEEAFARVVELEPRNVGYYVLMSNIYTDTGQLDCVARVRAVMRKRGLKKEPGCS 923

Query: 531  LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ-GLQETSLQ------------- 576
             +E  G VH F + D  +P +  IY ++  +E+ ++++ G++E+ +              
Sbjct: 924  YVEHNGRVHLFMADDHSHPQARRIYELVTRLELMVKEKSGVRESVVAVPKGRMEKEAAQP 983

Query: 577  ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
                H E+LAVAFGL++T   + I ++ NLR+CGDCHSF+K  S   NR  ++RD  RFH
Sbjct: 984  LVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKAVSATTNRSFLVRDASRFH 1043

Query: 633  RFQGGQCSCRDYW 645
            RF GG CSC+DYW
Sbjct: 1044 RFDGGVCSCKDYW 1056


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 204/678 (30%), Positives = 334/678 (49%), Gaps = 109/678 (16%)

Query: 73  PQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVT 132
           P  S ++ +  + +GDL  A  +  +  EP+++ W  +I     +G+P++   IY  L++
Sbjct: 11  PCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLS 70

Query: 133 RTV-----------------------------------------------LLNKCGKLKE 145
           R V                                               +  KC  +  
Sbjct: 71  RNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNG 130

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
              +FD +  +DV+SW +M  CY + GM R+G+ L  +MG  G+  + +T+ S++ A   
Sbjct: 131 ARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD 190

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
              +++G+ +H F+  + M+ +  + + LV+MY     +G  Q  L    +   D+V W 
Sbjct: 191 Y--IKLGREVHGFILRNEMEGNVYVSSALVNMY--ASSLGLKQARLVFDSMYHRDIVSWN 246

Query: 266 TLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLN--------------QDA 307
            +++ Y  + E +    LF +M    ++ N  SW   ISG +               QD+
Sbjct: 247 VMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDS 306

Query: 308 EFK---------YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELA 343
             K            C ++ +L  G  +H Y+ ++    D               ++EL+
Sbjct: 307 GIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELS 366

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             +F+ +  K+V  W ++I A +M G   +++ LF +M ++G +P+ VTFI +LS CSH 
Sbjct: 367 RHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHS 426

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
            L DEG    +  S  ++I P   HY CMVD+L RAG LEE+ +FI  MPI P  + W +
Sbjct: 427 QLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGA 486

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL ACR ++NV+L   A   L E +P N G +VLL+NI   A +  + S IR  +RD GL
Sbjct: 487 LLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGL 546

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ------------ 571
            K  G S ++    V+ F +GD  N   + IY  L+EI+  ++  G Q            
Sbjct: 547 AKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQ 606

Query: 572 ----ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
               ET   H ERLAVAFG++++S KTT+R+  NLRICGDCH+ +K+ +++   +I++RD
Sbjct: 607 EQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRD 666

Query: 628 NGRFHRFQGGQCSCRDYW 645
           + RFH F+ G C+C D+W
Sbjct: 667 SLRFHHFRDGYCTCNDFW 684


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 293/541 (54%), Gaps = 41/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G++ +  +LF+++P  D+I W+ MI+ Y      +E L L  +M    V P+  T
Sbjct: 281 LYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFT 340

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++ A      L++GK +H  + +  +  +  + N ++D+Y KCG+I  + KL    E
Sbjct: 341 FASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFE--E 398

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + + + V W T++ GYV+  + + A  LF  M+E ++    +  S +L        ++ A
Sbjct: 399 LPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVL--------RASA 450

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
           S+ AL  G+ +H    K   + D                I  A   F ++++++   W +
Sbjct: 451 SLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNA 510

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I  Y+M G + +A++LF  M+ T  KP+++TF+ +LSACS+ GL+ +G       S+ Y
Sbjct: 511 MICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDY 570

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           +IKP ++HY CMV LLGR G  +E+   I  +   P V +W +LL AC  H+ V L    
Sbjct: 571 DIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVC 630

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            +H+ E +P +D  HVLL+N+YA AGR D+++ +R  ++   ++K+ G S +E  G VH 
Sbjct: 631 AQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHY 690

Query: 541 FTSGDIFNPHSEEIYLML----------------NEIEMTLQQQGLQETSLQHRERLAVA 584
           F+ GD  +P  + I  ML                N + + +Q    +     H ERLA+A
Sbjct: 691 FSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALA 750

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           +GLI T    +IRI+ NLRIC DCH+ MK+ S+V  REIVIRD  RFH F+ G CSC DY
Sbjct: 751 YGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDY 810

Query: 645 W 645
           W
Sbjct: 811 W 811



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 182/410 (44%), Gaps = 31/410 (7%)

Query: 93  QQIIRQGDEPEIKIWNSIIENQLIN-GYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQ 148
           QQIIR G +P   I    +   ++  G   ++FA       + +LLN   +   L++  +
Sbjct: 42  QQIIRNGADP---IAGKHLHCHILKRGTSLDLFA-------QNILLNFYVQSNSLQDASK 91

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           LFD++P  + IS+ T+   Y+    + + L  + ++  EG   +     +L+     +  
Sbjct: 92  LFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDL 151

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV---DVVLWT 265
             +   LH  + +        +   L+D Y   G +  A     R+  D++   D+V WT
Sbjct: 152 AHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVA-----RHVFDDICCKDMVSWT 206

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ-------DAEFKYKSCASIG 318
            +V+ Y ++   +E+ +LF++M           ISG L         +       CA  G
Sbjct: 207 GMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKG 266

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
              H ++V + + +       I  A  LF E+ + ++  W+ +IA YA +  +++A+DLF
Sbjct: 267 CYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLF 326

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
           L M +T   P+  TF ++L AC+    +D G    S   + + +   +     ++D+  +
Sbjct: 327 LRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAK 385

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
            G +E S      +P   DV+ W++++       + + A + F H+ E D
Sbjct: 386 CGEIENSMKLFEELPDRNDVT-WNTIIVGYVQLGDGERAMNLFTHMLEHD 434


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/468 (36%), Positives = 264/468 (56%), Gaps = 44/468 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG--VSPDEVTMVS 198
           G +    +LFD+ P RDV+SWNT+I  Y   G+ RE L L  ++  +G  V PDEVT++ 
Sbjct: 170 GPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIG 229

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            +S   ++ DLE+GK LH F++   ++ +  L+N ++DMY KCG +  A  +  R  I  
Sbjct: 230 AVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFER--ISN 287

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-------- 310
              V WTT++ G+ +    ++AR LFDEM ER++  W  +++G + Q+ + K        
Sbjct: 288 RTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYV-QNKQGKEAIALFHE 346

Query: 311 ----------------YKSCASIGALYHGIWVHVYIKKNQISID---------------N 339
                             +C+ +GAL  G+WVH YI ++++ +                N
Sbjct: 347 MQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGN 406

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           I+ A  +F+EI  +N   WTS+I   A  GHA +AI+ F  M + G +PD++TFI +LSA
Sbjct: 407 IKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSA 466

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           C H GLV+ G  F S     Y+++ KM+HY CM+DLLGRAGHL+E+   + +MP+ PD  
Sbjct: 467 CCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAV 526

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           +W +L  ACR H N+ L E A   L E DP + G +VLLAN+YA+A       ++R+ +R
Sbjct: 527 VWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMR 586

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567
            +G++K  G S IE  G VH+F   D  +  +  IY  L+EI + ++ 
Sbjct: 587 HLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNAIYDCLHEITLQMRH 634



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 157/384 (40%), Gaps = 54/384 (14%)

Query: 29  RISRKFANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVF 85
           R++     V P  + VI     C+ + + E   R+H  +    +    ++   V +  V 
Sbjct: 212 RLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVK 271

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145
            G L  A  +  +        W ++I                           + G +++
Sbjct: 272 CGSLELANSVFERISNRTAVSWTTMIVGH-----------------------ARLGMMED 308

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
              LFD++P RDV  WN +++ Y      +E + L  +M    V P+E+TMV+L+SA ++
Sbjct: 309 ARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQ 368

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           L  LEMG  +H +++   + +S +L   LVDMY KCG I +A  +    EI   + + WT
Sbjct: 369 LGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFN--EIPVQNALTWT 426

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
           +++ G       DEA   F  M++  L    +   G+L+        +C   G       
Sbjct: 427 SMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLS--------ACCHAG------- 471

Query: 326 VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
               ++  +     +   Y L     E+ +  ++ +I     AGH  +A  L   M    
Sbjct: 472 ---LVEAGRQFFSLMHAKYHL-----ERKMKHYSCMIDLLGRAGHLDEAEQLVNAMP--- 520

Query: 386 TKPDQVTFIALLSACSHGGLVDEG 409
             PD V + AL  AC   G +  G
Sbjct: 521 MDPDAVVWGALFFACRMHGNITLG 544


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/547 (33%), Positives = 295/547 (53%), Gaps = 50/547 (9%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDE 193
            L++    +    Q+F+++   ++ +WNTMI  +         + L S+M  A  + PD 
Sbjct: 77  ALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDT 136

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T   L  A  KL D+ +G+ +H  +  +       + N LV MY   G +  A      
Sbjct: 137 HTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSA------ 190

Query: 254 YEIDEV----DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           Y++ E+    D V W ++++G+  +   +EA  L+ EM    +      +  +L+     
Sbjct: 191 YQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLS----- 245

Query: 310 KYKSCASIGALYHGIWVHVYIKK-----NQISID----------NIELAYDLFSEISEKN 354
              +C  +GAL  G  VH+Y+ K     NQ + +          N   A  +F E+ E++
Sbjct: 246 ---ACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERS 302

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           V  WTS+I   A+ G   +A+ LF E+E  G KP ++TF+ +L ACSH G++DEG+++  
Sbjct: 303 VVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFR 362

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
           +    Y I P+++H+GCMVDLL RAG + ++ ++I +MP+PP+  IW +LL AC  H ++
Sbjct: 363 RMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHL 422

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           +L E A   +   +  + G  VLL+N+YA   R  D+  +R  +   G+KK  GYSL+E 
Sbjct: 423 ELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVEL 482

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQHR- 578
              V++F  GD  +P SEE Y ML +I   L+ +G                +ET+L H  
Sbjct: 483 KNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHT 542

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E++A+AF L++T   T IRI+ NLR+C DCH  +K+ S+V+ REI++RD  RFH F+ G 
Sbjct: 543 EKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGS 602

Query: 639 CSCRDYW 645
           CSC+DYW
Sbjct: 603 CSCKDYW 609


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/365 (44%), Positives = 222/365 (60%), Gaps = 31/365 (8%)

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVY 356
           ++CAS+ AL  G  VH  I K    +D                IE A ++FS++ E +V 
Sbjct: 6   RACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVA 65

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W ++I+  A  G  ++A+ LF +M +TG KP+Q+TF+ +LS CSH GLVDEG ++    
Sbjct: 66  SWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSM 125

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           +R + I PK +HY CMVDL GRAG L+E+ NFI  MP+ P+ S+W SLL ACR H N++L
Sbjct: 126 TRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIEL 185

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
           AE A + L E  P N G +VLL+NIYA AGR DD  ++R  ++D  +KK+ G S IE   
Sbjct: 186 AERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQN 245

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRER 580
            VH F  GD  +P  EEIY  L  + + ++  G +  T+                 H E+
Sbjct: 246 KVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEK 305

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFG+IST   TTIR+V NLR+CGDCH+  K  S++ +REIV+RD  RFH F+ GQCS
Sbjct: 306 LAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCS 365

Query: 641 CRDYW 645
           C DYW
Sbjct: 366 CGDYW 370



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG++++  ++F KL   DV SWN MIS     G  +E + L  +M   GV P+++T
Sbjct: 42  MYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQIT 101

Query: 196 MVSLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V ++S  +    ++ G+N       +  +       + +VD++ + G + EA   + + 
Sbjct: 102 FVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQM 161

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
            + E +  +W +L+         + A R  ++++E
Sbjct: 162 PV-EPNASVWGSLLGACRVHGNIELAERAVEQLIE 195



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 40/217 (18%)

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           M  ++ A   +  LE GK +H  + +   ++  S+ N LVDMY KCG+I +AQ++  +  
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSK-- 58

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKY 311
           + E DV  W  ++SG  +     EA  LF++M    V+ N I++ +++SG          
Sbjct: 59  LLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSG---------- 108

Query: 312 KSCASIGALYHGI-WVHVYIKKNQIS--IDNIELAYDLFSEIS--------------EKN 354
             C+  G +  G  +     + + IS   ++     DLF                  E N
Sbjct: 109 --CSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPN 166

Query: 355 VYLWTSVIAAYAMAGH---AQKAIDLFLEM--EETGT 386
             +W S++ A  + G+   A++A++  +E+  E  GT
Sbjct: 167 ASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGT 203



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 24/222 (10%)

Query: 49  RSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           R+C+S+   E+   +H+ +I      D  +S  + +     G +  AQ++  +  EP++ 
Sbjct: 6   RACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVA 65

Query: 106 IWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKLKEVCQLFDKL 153
            WN++I     +G  +E   ++  +         +T  V+L+ C   G + E    FD +
Sbjct: 66  SWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSM 125

Query: 154 PNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
                IS     ++ M+  +   G   E L  +++M  E   P+     SL+ A     +
Sbjct: 126 TRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVE---PNASVWGSLLGACRVHGN 182

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           +E+ +     L E T +  G+ +  L ++Y   G+  +A K+
Sbjct: 183 IELAERAVEQLIELTPENPGTYV-LLSNIYAAAGRWDDAGKV 223


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 293/559 (52%), Gaps = 62/559 (11%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTM 196
            KCG      Q+FD++P+RD I+W ++++      +  + L + S +G+   + PD+   
Sbjct: 117 GKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVF 176

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            +L+ A   L  ++ G+ +H     S       + + LVDMY KCG +  A+ +     +
Sbjct: 177 SALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRV 236

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS--- 313
              + + WT +VSGY KS  ++EA  LF  +  +NL SWT +ISG +      +  S   
Sbjct: 237 K--NTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFT 294

Query: 314 ---------------------CASIGALYHGIWVH------VYIKKNQISIDNIELAYDL 346
                                CA++ A   G  VH      +Y K       ++  A D+
Sbjct: 295 EMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAK-----CSDVIAAKDI 349

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           FS +  ++V  WTS+I   A  G A+KA+ L+ +M   G KP++VTF+ L+ ACSH G V
Sbjct: 350 FSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFV 409

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           ++G +     ++ Y I+P +QHY C++DLLGR+G L+E+ N I +MP PPD   W++LL 
Sbjct: 410 EKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLS 469

Query: 467 AC----RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           AC    R    +++A+H        DP     ++LL+NIYA A     +S  R KL +M 
Sbjct: 470 ACKRQGRGQMGIRIADHLVSSFKLKDP---STYILLSNIYASASLWGKVSEARRKLGEME 526

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI--EMTLQQQGLQETS------ 574
           ++K  G+S +E       F +G+  +P  E+I+ +L ++  EM ++   + +TS      
Sbjct: 527 VRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDM 586

Query: 575 ---------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
                      H ER AVA+GL+     T IRIV NLR+CGDCH  +K  S++  REI++
Sbjct: 587 DEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIV 646

Query: 626 RDNGRFHRFQGGQCSCRDY 644
           RD  R+H F+GG+CSC D+
Sbjct: 647 RDATRYHHFKGGKCSCNDF 665



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 32/191 (16%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           R L   K LH  + +  +     L N LV++Y KCG    A ++    E+   D + W +
Sbjct: 85  RTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFD--EMPHRDHIAWAS 142

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYH 322
           +++   ++N           +  + L  ++ + S    +  +F +    K+CA++G++ H
Sbjct: 143 VLTALNQAN-----------LSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 191

Query: 323 GIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  VH +   ++ + D +                 A  +F  I  KN   WT++++ YA 
Sbjct: 192 GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 251

Query: 368 AGHAQKAIDLF 378
           +G  ++A++LF
Sbjct: 252 SGRKEEALELF 262


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/579 (33%), Positives = 296/579 (51%), Gaps = 65/579 (11%)

Query: 130 LVTRTVLLNKC---GKLKEVCQLF----DKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
           +VT + L+++    G++KE  +LF    D     +++SWN MIS +   G Y + + +  
Sbjct: 140 VVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQ 199

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
            M  EG+ PD  ++ S++ A   L    MG  +H ++ +  +     +++ L+DMY KC 
Sbjct: 200 NMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCA 259

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM--VERNLISWTLMIS 300
              E   +    E+DEVDV     LV+G  ++   D A  +F +   ++ N++SWT MI+
Sbjct: 260 CASEMSGVFN--EMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIA 317

Query: 301 GMLNQDAEFK-----------------------YKSCASIGALYHGIWVHVYIKKNQISI 337
                  + +                         +C +I AL HG   H +  +N I  
Sbjct: 318 SCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFN 377

Query: 338 D--------------NIELAYDL-FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
           D                 LA  L F  +  +N+  W S++A YAM G   +AI++F  M+
Sbjct: 378 DVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQ 437

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
             G KPD V+F  +LSAC+ GGL +EG+ +    SR + ++ +M+HY CMV LLGR+G L
Sbjct: 438 RCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRL 497

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           EE+   I  MP  PD  +W +LL +CR H  V L E A K + E +P N G ++LL+NIY
Sbjct: 498 EEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIY 557

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE 562
           A      ++  +R  +R  GLKK  GYS IE    VH   +GD  +P   +I   L ++ 
Sbjct: 558 ASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLT 617

Query: 563 MTLQQQG--------LQETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRICG 606
           + +++ G        LQ+   Q        H E+LAV  GL++T     ++++ NLRIC 
Sbjct: 618 VEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICR 677

Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           DCH+ +K  S    REI +RD  RFH+F+GG CSC DYW
Sbjct: 678 DCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 152/390 (38%), Gaps = 83/390 (21%)

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           IS    I  ++ +  +   + + S M  +G+ PD   + ++I     L  L+ GK +H F
Sbjct: 40  ISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCF 99

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
              S + +   +L+ L+ MY +   + +A+ +  +  + +  VV  + L+S + +     
Sbjct: 100 ALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDK--LPQPGVVTSSALISRFARKGRVK 157

Query: 279 EARRLF----DEMVERNLISWTLMISGM--------------------LNQDAEFKYKSC 314
           E + LF    D  VE NL+SW  MISG                     L  D        
Sbjct: 158 ETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVL 217

Query: 315 ASIGAL---YHGIWVHVYIKKNQISIDNIELAY---------------DLFSEISEK--- 353
            ++G L     GI +H Y+ K  +  D   ++                 +F+E+ E    
Sbjct: 218 PAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVG 277

Query: 354 ------------------------------NVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                                         NV  WTS+IA+ +  G   +A++LF EM+ 
Sbjct: 278 ACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQI 337

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEG--YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
            G KP+ VT   LL AC +   +  G      S ++ ++N    +     ++D+  + G 
Sbjct: 338 EGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFN---DVYVGSALIDMYAKCGR 394

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCH 471
           +  S      MP    VS W+SL+     H
Sbjct: 395 MLASRLCFDMMPNRNLVS-WNSLMAGYAMH 423


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 282/532 (53%), Gaps = 30/532 (5%)

Query: 138  NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
             +C +L++   +FD++ + DV+SW  M+S       ++E   L  +M  EGV PD+ T+ 
Sbjct: 583  GRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLA 642

Query: 198  SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-I 256
            + +        L +GK +H  + E  ++   ++ N L++MY  CG   EA   L  +E +
Sbjct: 643  TTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREA---LSFFETM 699

Query: 257  DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
               D+V W  + + Y ++    EA  LF  M    +    L  S  LN        +  S
Sbjct: 700  KARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGG---SALVS 756

Query: 317  IGALYHG----------IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
             G L+HG          + V   + K       ++ A  LF    +  V L  ++I A A
Sbjct: 757  DGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALA 816

Query: 367  MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
              G +++A+ +F +M++ G +PD  T ++++SAC H G+V+EG          + I P +
Sbjct: 817  QHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTL 876

Query: 427  QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
            +HY C VDLLGRAG LE +   I  MP   +  +W+SLL  C+   + +L E   + + E
Sbjct: 877  EHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILE 936

Query: 487  TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
             DP N  AHV+L+NIY   G+  D    R KL D  +K   G S +E G  VH+F +GD 
Sbjct: 937  LDPHNSAAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDR 996

Query: 547  FNPHSEEIYLMLNEIEMTLQQQG------------LQETSLQ-HRERLAVAFGLISTSEK 593
             +P ++EIY++L+++E+ +++ G            L+E +L  H ER+A+AFGLI+T   
Sbjct: 997  SHPQTDEIYVVLDKLELLMRRAGYEADKGLDAEDELKEKALGYHSERIAIAFGLIATPPD 1056

Query: 594  TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            TT++IV NLR+CGDCH+  K  S +  REI++RD+ RFH F  G CSC+D W
Sbjct: 1057 TTLKIVKNLRVCGDCHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 173/407 (42%), Gaps = 60/407 (14%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMV 197
           +CG L+E   +F K+  R+V+SW  +IS     G +     L   M  E   +P+  T+V
Sbjct: 72  RCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLV 131

Query: 198 SLISARTKLRDLEMGKNLHLFL-------EESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           ++++A    RDL +G+++H  +       E +T  + G   N +++MY KCG   +A  +
Sbjct: 132 AMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVG---NAMINMYAKCGSPEDAIAV 188

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNE-RDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
                I E DVV WT +   Y +      +A R+F EM+ + L    +     L      
Sbjct: 189 F--LTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALG----- 241

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEIS--- 351
              +C S   L  G W+H  + +  +  D +               E AY +F  ++   
Sbjct: 242 ---ACTS---LRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQ 295

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           E ++  W ++I+A   AG    A+ +F  +   G +P+ VT I +L+A     L   G D
Sbjct: 296 ELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNA-----LAASGVD 350

Query: 412 FLSKKSRVYNIKPKMQHY-------GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           F    +R ++ +     Y         ++ +  + G    +      +    DV  W+++
Sbjct: 351 F--GAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTM 408

Query: 465 LRACRCHQNVKLAEHAFKH--LTETDPLNDGAHVLLANIYAKAGRLD 509
           L A    ++     + F H  L   DP N  + + + N  + +  LD
Sbjct: 409 LGASEDRKSFGKVVNTFHHMLLAGIDP-NKVSFIAILNACSNSEALD 454



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 167/433 (38%), Gaps = 62/433 (14%)

Query: 28  MRISRK--FANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF 85
           +RI R+     + P  +  I    +C+S+ +   +HS L    L  DP     +      
Sbjct: 218 LRIFREMLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGK 277

Query: 86  TGDLGYAQQIIR---QGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTR 133
            GD   A  + +      E ++  WN++I   +  G   +  AI+  L         VT 
Sbjct: 278 CGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTL 337

Query: 134 TVLLN---------------------------------------KCGKLKEVCQLFDKLP 154
             +LN                                       KCG       +F ++ 
Sbjct: 338 ITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIR 397

Query: 155 NR-DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
            + DVISWNTM+        + + +     M   G+ P++V+ +++++A +    L+ G+
Sbjct: 398 WKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGR 457

Query: 214 NLH-LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
            +H L L      +  S+   LV MY KCG I EA+ +     +    +V W  ++  Y 
Sbjct: 458 KIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYA 517

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGML-----NQDAEFKYKSCASIGALYHGIWVH 327
           +++   EA     EM++  ++   L  + +L     +Q+A+         G  Y    + 
Sbjct: 518 QNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESG--YRSACLE 575

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
             +         +E A  +F E+   +V  WT++++A A     ++   LF  M+  G  
Sbjct: 576 TALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVI 635

Query: 388 PDQVTFIALLSAC 400
           PD+ T    L  C
Sbjct: 636 PDKFTLATTLDTC 648



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 163/369 (44%), Gaps = 33/369 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNR---DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
           +  KCG  +    +F  + +R   D++SWN MIS     G + + + +  ++  EG+ P+
Sbjct: 274 MYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPN 333

Query: 193 EVTMVSLISA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
            VT++++++A      D    +  H  + ES       + N ++ MY KCG    A  + 
Sbjct: 334 SVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVF 393

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA 307
            R    + DV+ W T++          +    F  M    ++ N +S+  +++   N +A
Sbjct: 394 RRIRW-KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEA 452

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSE--ISEKNVYLWTSV 361
               +   S+       +V   +    +S+     +I  A  +F E  +  +++  W  +
Sbjct: 453 LDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVM 512

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           + AYA    +++A    +EM + G  PD ++F ++LS+C           + S++++V  
Sbjct: 513 LGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC-----------YCSQEAQVLR 561

Query: 422 IKPKMQHY--GC----MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
           +      Y   C    ++ + GR   LE++ +    M    DV  W++++ A   +++ K
Sbjct: 562 MCILESGYRSACLETALISMHGRCRELEQARSVFDEMD-HGDVVSWTAMVSATAENRDFK 620

Query: 476 LAEHAFKHL 484
              H F+ +
Sbjct: 621 EVHHLFRRM 629



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 25/223 (11%)

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            +L+ +     DL  GK  H  +  + ++    L N L++MY +CG + EA  +  + E 
Sbjct: 29  TALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME- 87

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDA-------- 307
            E +VV WT L+S   +S     A  LF  M +E +    +  +  MLN  A        
Sbjct: 88  -ERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG 146

Query: 308 --------EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359
                   E   +  ++   L     +++Y K       + E A  +F  I EK+V  WT
Sbjct: 147 RSIHAMIWELGLERESTTATLVGNAMINMYAK-----CGSPEDAIAVFLTIPEKDVVSWT 201

Query: 360 SVIAAYAMAGH-AQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           ++  AYA        A+ +F EM      P+ +TFI  L AC+
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 187/555 (33%), Positives = 298/555 (53%), Gaps = 54/555 (9%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVS 198
           CG+++    +FD + +R +  WN MI+ Y       + L L  +M  A G+  +  TM S
Sbjct: 265 CGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSS 324

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +   +   + +H ++ +  ++ +  L N L+DMY + G I  ++++    E  +
Sbjct: 325 IVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSME--D 382

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK------ 312
            D+V W T+++ YV      +A  L  EM     I       G  N + +  +K      
Sbjct: 383 RDIVSWNTIITSYVICGRSSDALLLLHEM---QRIEEKSTYDGDYNDEKQVPFKPNSITL 439

Query: 313 -----SCASIGALYHGIWVHVYIKKN----QISIDN-----------IELAYDLFSEISE 352
                 CAS+ AL  G  +H Y  +N    Q+++ +           + LA  +F ++  
Sbjct: 440 MTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPI 499

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-----PDQVTFIALLSACSHGGLVD 407
           +NV  W  +I AY M G  +++++LF +M   G K     P +VTFIAL ++CSH G+VD
Sbjct: 500 RNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVD 559

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD-VSIWSSLLR 466
           EG     K    + I+P   HY C+VDL+GRAG +EE+   + +MP   D V  WSSLL 
Sbjct: 560 EGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLG 619

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           ACR + N+++ E A ++L +  P     +VLL+NIY+ AG  D    +R +++ MG+KK+
Sbjct: 620 ACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKE 679

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------Q 571
            G S IE G  VHKF +GD+ +P SE+++  L  +   L+++G                +
Sbjct: 680 PGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEK 739

Query: 572 ETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           ET L  H E+LA+AFG+++T   TTIR+  NLR+C DCH+  K  S++ +REI++RD  R
Sbjct: 740 ETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARR 799

Query: 631 FHRFQGGQCSCRDYW 645
           FH F+ G CSC DYW
Sbjct: 800 FHHFKDGTCSCGDYW 814



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 172/381 (45%), Gaps = 47/381 (12%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G+L +   L     +RD+++WN+MIS ++    + E L  L  M  EGV PD VT  S
Sbjct: 162 KLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFAS 221

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++ A + L  L  GK +H +   +   I  S + + LVDMY  CG++ E+ +L+    +D
Sbjct: 222 VLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQV-ESGRLVFDSVLD 280

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCAS 316
              + LW  +++GY +S   ++A  LF EM     L S    +S ++       Y  C  
Sbjct: 281 R-KIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPA-----YVRCEG 334

Query: 317 IG--------ALYHGIWVHVYIKKNQIS----IDNIELAYDLFSEISEKNVYLWTSVIAA 364
           I          +  G+  + Y++   I     + +I+ +  +F  + ++++  W ++I +
Sbjct: 335 ISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITS 394

Query: 365 YAMAGHAQKAIDLFLEM---EETGT-------------KPDQVTFIALLSACSHGGLVDE 408
           Y + G +  A+ L  EM   EE  T             KP+ +T + +L  C+    + +
Sbjct: 395 YVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAK 454

Query: 409 GYDFLSKKSRVYNIK----PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           G     K+   Y I+     ++     +VD+  + G L  +      MPI  +V  W+ +
Sbjct: 455 G-----KEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPI-RNVITWNVI 508

Query: 465 LRACRCHQNVKLAEHAFKHLT 485
           + A   H   K +   F+ + 
Sbjct: 509 IMAYGMHGKGKESLELFEDMV 529



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 162/361 (44%), Gaps = 55/361 (15%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG L +  ++FD++  RD +SWN++IS       +   +     M  EG  P   T
Sbjct: 56  MYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFT 115

Query: 196 MVSLISARTKLRD---LEMGKNLH--LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           +VS+  A + LR    L +GK +H   F +      S    N L+ MY K G++ +A+ L
Sbjct: 116 LVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSN---NALMAMYAKLGRLDDAKSL 172

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
           L  +E  + D+V W +++S + ++    EA      MV   +    +  + +L       
Sbjct: 173 LVLFE--DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVL------- 223

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDN----------------IELAYDLFSEISEKN 354
             +C+ +  L  G  +H Y  +    I+N                +E    +F  + ++ 
Sbjct: 224 -PACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRK 282

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSA---CSHGGLVDEGY 410
           + LW ++IA YA + H +KA+ LF+EME   G   +  T  +++ A   C       EG 
Sbjct: 283 IGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRC-------EG- 334

Query: 411 DFLSKKSRV--YNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
             +S+K  +  Y IK  ++        ++D+  R G ++ S     SM    D+  W+++
Sbjct: 335 --ISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSME-DRDIVSWNTI 391

Query: 465 L 465
           +
Sbjct: 392 I 392



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 14/293 (4%)

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH--LFLEESTMKISGSLLNYLVDMYFKC 241
           M   G SPD     +++ A   +++L +GK +H  +F        S ++ N LV+MY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           G +G+A K+  R  I E D V W +++S   +  E + A + F  M+       +  +  
Sbjct: 61  GGLGDAYKVFDR--ITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVS 118

Query: 302 MLNQDAEFKYKSCASIGALYHGIWV---HVYIKKNQ------ISIDNIELAYDLFSEISE 352
           M    +  + +    +G   HG      H     N         +  ++ A  L     +
Sbjct: 119 MALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFED 178

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           +++  W S+I++++      +A+     M   G KPD VTF ++L ACSH  L+  G + 
Sbjct: 179 RDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEI 238

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            +   R  ++         +VD+    G + ES   +    +   + +W++++
Sbjct: 239 HAYALRTDDVIENSFVGSALVDMYCNCGQV-ESGRLVFDSVLDRKIGLWNAMI 290



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 6/138 (4%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-----VSPDE 193
           KCG L    ++FD++P R+VI+WN +I  Y   G  +E L L   M AEG     V P E
Sbjct: 483 KCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTE 542

Query: 194 VTMVSLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           VT ++L ++ +    ++ G +L H    E  ++ +      +VD+  + GK+ EA  L+ 
Sbjct: 543 VTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVN 602

Query: 253 RYEIDEVDVVLWTTLVSG 270
                   V  W++L+  
Sbjct: 603 TMPSGFDKVGAWSSLLGA 620


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 207/703 (29%), Positives = 343/703 (48%), Gaps = 106/703 (15%)

Query: 36  NVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
            V P ++  I    SC    S+ +  RIH  ++ + L  DP++S  +       G L +A
Sbjct: 140 GVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHA 199

Query: 93  QQIIRQGDEPEIKI-WNSIIENQLINGYPQEVFAIYLYLV------TRTVLLN------- 138
           +++  + +     I W+ +     ++G   E    + +++      T++ ++        
Sbjct: 200 KRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSS 259

Query: 139 ----------------------------------KCGKLKEVCQLFDKLPN--RDVISWN 162
                                             +CG ++E  ++FD +    RDV+SWN
Sbjct: 260 PALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWN 319

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
            M+S Y      ++ + L  +M    +  D+VT VSL+SA +   D+ +G+ LH  +   
Sbjct: 320 IMLSAYVHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLHKQIVND 376

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            ++ +  + N LV MY KCG   EA+ +  + E  +  ++ WTT++S YV+     EA  
Sbjct: 377 ELEKNVIVGNALVSMYAKCGSHTEARAVFDKME--QRSIISWTTIISAYVRRRLVAEACH 434

Query: 283 LFDEMVE-------RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
           LF +M+E       + +    L    +LN        +CA + AL  G  V        +
Sbjct: 435 LFQQMLELEKNGSSQRVKPDALAFVTILN--------ACADVSALEQGKMVSEQAASCGL 486

Query: 336 SIDN---------------IELAYDLFSEI-SEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           S D                IE    +F  + S  +V LW ++IA YA  G + +A+ LF 
Sbjct: 487 SSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFW 546

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY-NIKPKMQHYGCMVDLLGR 438
            ME  G +PD  +F+++L ACSH GL D+G  + +  +  Y N+   +QH+GC+ DLLGR
Sbjct: 547 RMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGR 606

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
            G L+E+  F+  +P+ PD   W+SLL ACR H+++K A+     L   +P     +V L
Sbjct: 607 GGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVAL 666

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
           +NIYA+  +   ++++R  + + G+KK+ G S IE G ++H F +GD  +P + EI   L
Sbjct: 667 SNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREEL 726

Query: 559 NEIEMTLQQQGL-------------QETS---LQHRERLAVAFGLISTSEKTTIRIVNNL 602
            ++   +++ G              QE       H ERLA+A GLIST   T +R+  NL
Sbjct: 727 AKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNL 786

Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           R+C DCH+  K+ S++  R+IV+RD  RFH F+ G+CSC+DYW
Sbjct: 787 RVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 157/349 (44%), Gaps = 17/349 (4%)

Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
           FD L  R++ SW  +++ +   G  +E L  L +M  +GV PD VT ++ + +      L
Sbjct: 102 FDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESL 161

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
             G  +H  + +S ++I   + N L++MY KCG +  A+++  + E    +V+ W+ +  
Sbjct: 162 RDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTR-NVISWSIMAG 220

Query: 270 GYVKSNERDEARRLFDEMVERNL-ISWTLMI-------SGMLNQDAEFKYKSCASIGALY 321
            +       EA R F  M+   +  + + M+       S  L QD    + SC ++    
Sbjct: 221 AHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIH-SCIALSGFE 279

Query: 322 HGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFL 379
             + V   +         +E A  +F  + E  ++V  W  +++AY      + AI L+ 
Sbjct: 280 SELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQ 339

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
            M+    + D+VT+++LLSACS    V  G   L K+     ++  +     +V +  + 
Sbjct: 340 RMQ---LRADKVTYVSLLSACSSAEDVGLGR-VLHKQIVNDELEKNVIVGNALVSMYAKC 395

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           G   E+      M     +S W++++ A    + V  A H F+ + E +
Sbjct: 396 GSHTEARAVFDKMEQRSIIS-WTTIISAYVRRRLVAEACHLFQQMLELE 443



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 123/294 (41%), Gaps = 44/294 (14%)

Query: 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK---LLGRYEIDEVDVVLWTTLVSGYVK 273
           L LE+  ++   +    L+    +   + E +K   L  ++ +   +++L   +VS Y  
Sbjct: 32  LDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAH 91

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGM---------------LNQDAE--------FK 310
            +   +A+  FD + +RNL SWT +++                 + QD            
Sbjct: 92  CDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITA 151

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISE-KN 354
             SC    +L  GI +H  +  +++ ID               ++  A  +F+++   +N
Sbjct: 152 LGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRN 211

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           V  W+ +  A+A+ G+  +A+  F  M   G K  +   + +LSACS   LV +G   + 
Sbjct: 212 VISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR-LIH 270

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP-PDVSIWSSLLRA 467
               +   + ++     ++ + GR G +EE+     +M     DV  W+ +L A
Sbjct: 271 SCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSA 324


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 186/553 (33%), Positives = 293/553 (52%), Gaps = 70/553 (12%)

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           R+   W  +I  YT  G + E + +   M  E ++P   T  +L+ A   + DL +G+  
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF 172

Query: 216 HLFLEESTMKISGSLL----NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           H      T ++ G       N ++DMY KCG I  A+K+    E+ E DV+ WT L++ Y
Sbjct: 173 H----AQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFD--EMPERDVISWTELIAAY 226

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE----FKY---------------- 311
            +    + A  LF+ +  +++++WT M++G   Q+A+     +Y                
Sbjct: 227 ARVGNMESAADLFESLPTKDMVAWTAMVTG-FAQNAKPQEALEYFDRMEKSGIRADEVTV 285

Query: 312 ----KSCASIGALYHGIWV-------------HVYIKKNQISI----DNIELAYDLFSEI 350
                +CA +GA  +                 HV I    I +     N+E A ++F  +
Sbjct: 286 AGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSM 345

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEG 409
           + KNV+ ++S+I   A  G AQ+A+DLF  M  +T  KP+ VTF+  L+ACSH GLVD+G
Sbjct: 346 NNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQG 405

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
               +   + + ++P   HY CMVDLLGRAG L+E+   I +M + P   +W +LL ACR
Sbjct: 406 RQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACR 465

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            H N  +AE A +HL E +P   G ++LL+N+Y+ AG    +  +R  +++ GLKK    
Sbjct: 466 IHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAV 525

Query: 530 S-LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE---------------- 572
           S ++++ G +HKF  G++ +P S++I   L E+   L   G Q                 
Sbjct: 526 SWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRL 585

Query: 573 TSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
             +QH E+LA+AF L++T+   TI+I+ NLR+C DCH FM++ S+V  R I++RDN RFH
Sbjct: 586 ILIQHTEKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFH 645

Query: 633 RFQGGQCSCRDYW 645
            F+ G CSC D+W
Sbjct: 646 HFRSGACSCGDFW 658



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 144/370 (38%), Gaps = 57/370 (15%)

Query: 37  VCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           + PVS     + ++C S+ +     + H+            +   + +  V  G +  A+
Sbjct: 146 ITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCAR 205

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           ++  +  E ++  W      +LI  Y                   + G ++    LF+ L
Sbjct: 206 KVFDEMPERDVISWT-----ELIAAYA------------------RVGNMESAADLFESL 242

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P +D+++W  M++ +      +E L    +M   G+  DEVT+   ISA  +L   +   
Sbjct: 243 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 302

Query: 214 NLHLFLEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
                 ++S    S  ++  + L+DMY KCG + EA  +     ++  +V  +++++ G 
Sbjct: 303 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF--VSMNNKNVFSYSSMILGL 360

Query: 272 VKSNERDEARRLFDEMVERNLISW-TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
                  EA  LF  MV +  I   T+   G L         +C+  G +  G  V   +
Sbjct: 361 ATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALT--------ACSHSGLVDQGRQVFASM 412

Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                        Y  F     ++ Y  T ++     AG  Q+A++L   M     +P  
Sbjct: 413 -------------YQTFGVEPTRDHY--TCMVDLLGRAGRLQEALELIKTMS---VEPHG 454

Query: 391 VTFIALLSAC 400
             + ALL AC
Sbjct: 455 GVWGALLGAC 464


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 185/544 (34%), Positives = 277/544 (50%), Gaps = 53/544 (9%)

Query: 139  KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
            K GKL     +  +   +DV+SW TMI+ YT      + L    +M   G+  DEV + +
Sbjct: 497  KLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTN 556

Query: 199  LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
             +SA   L+ L+ G+ +H     S         N LV +Y +CGKI E+   L   + + 
Sbjct: 557  AVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES--YLAFEQTEA 614

Query: 259  VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF--KYKSCAS 316
             D + W  LVSG+ +S   +EA R+F  M             G+ N +  F    K+ + 
Sbjct: 615  GDNIAWNALVSGFQQSGNNEEALRVFVRMNRE----------GIDNNNFTFGSAVKAASE 664

Query: 317  IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
               +  G  VH  I K     +               +I  A   F E+S KN   W ++
Sbjct: 665  TANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAI 724

Query: 362  IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
            I AY+  G   +A+D F +M  +  +P+ VT + +LSACSH GLVD+G  +    +  Y 
Sbjct: 725  INAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYG 784

Query: 422  IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            + PK +HY C+VD+L RAG L  +  FI  MPI PD  +W +LL AC  H+N+++ E A 
Sbjct: 785  LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAA 844

Query: 482  KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
             HL E +P +   +VLL+N+YA + + D     R K+++ G+KK+ G S IE    +H F
Sbjct: 845  HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 904

Query: 542  TSGDIFNPHSEEI--------------------YLMLNEIEMTLQQQGLQETSLQHRERL 581
              GD  +P ++EI                    + +LNE    LQ +        H E+L
Sbjct: 905  YVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNE----LQHEQKDPIIFIHSEKL 960

Query: 582  AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
            A++FGL+S      I ++ NLR+C DCH+++K  S+V NREI++RD  RFH F+GG CSC
Sbjct: 961  AISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSC 1020

Query: 642  RDYW 645
            +DYW
Sbjct: 1021 KDYW 1024



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/482 (22%), Positives = 201/482 (41%), Gaps = 79/482 (16%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           ++  S+DE  ++HS ++   L  +  +S ++F+F +F GDL  A ++  +  E  I  WN
Sbjct: 56  KTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWN 115

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNK---CGKLKE-------------------- 145
            +I+         EVF +++ +V+  V  N+    G L+                     
Sbjct: 116 KMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 175

Query: 146 --------VC-----------------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
                   VC                 ++FD L  +D  SW  MIS  +      E + L
Sbjct: 176 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 235

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
              M   G+ P      S++SA  K+  LE+G+ LH  + +        + N LV +YF 
Sbjct: 236 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 295

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
            G +  A+ +     + + D V + TL++G  +    ++A  LF  M    L   +  ++
Sbjct: 296 LGNLISAEHIFSN--MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLA 353

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYD 345
            ++         +C++ G L+ G  +H Y  K   + +N               IE A D
Sbjct: 354 SLV--------VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALD 405

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
            F E   +NV LW  ++ AY +    + +  +F +M+     P+Q T+ ++L  C   G 
Sbjct: 406 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 465

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           ++ G       S++     ++  Y C  ++D+  + G L+ + + +       DV  W++
Sbjct: 466 LELGEQI---HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTT 521

Query: 464 LL 465
           ++
Sbjct: 522 MI 523



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 162/362 (44%), Gaps = 49/362 (13%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KC  ++     F +    +V+ WN M+  Y  +   R    +  +M  E + P++ T
Sbjct: 393 LYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYT 452

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++    +L DLE+G+ +H  + ++  +++  + + L+DMY K GK+  A  +L R+ 
Sbjct: 453 YPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA 512

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
               DVV WTT+++GY + N  D+A   F +M++R + S  + ++  ++        +CA
Sbjct: 513 GK--DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVS--------ACA 562

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            + AL  G  +H     +  S D                IE +Y  F +    +   W +
Sbjct: 563 GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 622

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEG 409
           +++ +  +G+ ++A+ +F+ M   G   +  TF + + A S           H  +   G
Sbjct: 623 LVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTG 682

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
           YD    ++ V N          ++ +  + G + ++      +    +VS W++++ A  
Sbjct: 683 YD---SETEVCN---------ALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYS 729

Query: 470 CH 471
            H
Sbjct: 730 KH 731



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 34/324 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     +F  +  RD +++NT+I+  +  G   + + L  +M  +G+ PD  T+ SL+
Sbjct: 297 GNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLV 356

Query: 201 SARTKLRDLEMGKNLHLFLEE----STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            A +    L  G+ LH +  +    S  KI G+LLN    +Y KC  I  A       E+
Sbjct: 357 VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLN----LYAKCADIETALDYFLETEV 412

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
           +  +VVLW  ++  Y   ++   + R+F +M    ++        +L        K+C  
Sbjct: 413 E--NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL--------KTCIR 462

Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
           +G L  G  +H  I K    ++                ++ A+D+    + K+V  WT++
Sbjct: 463 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 522

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           IA Y       KA+  F +M + G + D+V     +SAC+    + EG   +  ++ V  
Sbjct: 523 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSG 581

Query: 422 IKPKMQHYGCMVDLLGRAGHLEES 445
               +     +V L  R G +EES
Sbjct: 582 FSSDLPFQNALVTLYSRCGKIEES 605



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 182/421 (43%), Gaps = 64/421 (15%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L    ++FD++P R + +WN MI    S  +  E  GL  +M +E V+P+E T   ++
Sbjct: 94  GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 153

Query: 201 SA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            A R      ++ + +H  +    ++ S  + N L+D+Y + G +  A+++     +   
Sbjct: 154 EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-- 211

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           D   W  ++SG  K+    EA RLF +M    ++      S +L+        +C  I +
Sbjct: 212 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLS--------ACKKIES 263

Query: 320 LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H  + K   S D               N+  A  +FS +S+++   + ++I  
Sbjct: 264 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 323

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV-YNIK 423
            +  G+ +KA++LF  M   G +PD  T  +L+ ACS  G +  G    +  +++ +   
Sbjct: 324 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 383

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSM------------------------------- 452
            K++  G +++L  +   +E + ++                                   
Sbjct: 384 NKIE--GALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 441

Query: 453 ---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRL 508
               I P+   + S+L+ C    +++L E     + +T+  LN     +L ++YAK G+L
Sbjct: 442 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKL 501

Query: 509 D 509
           D
Sbjct: 502 D 502



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 28/266 (10%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
            L ++CGK++E    F++    D I+WN ++S +   G   E L +  +M  EG+  +  
Sbjct: 594 TLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNF 653

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  S + A ++  +++ GK +H  + ++       + N L+ MY KCG I +A+K     
Sbjct: 654 TFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF--L 711

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
           E+   + V W  +++ Y K     EA   FD+M+  N+    + + G+L+        +C
Sbjct: 712 EVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLS--------AC 763

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           + IG +  GI             +++   Y L  +        +  V+     AG   +A
Sbjct: 764 SHIGLVDKGI----------AYFESMNSEYGLSPKPEH-----YVCVVDMLTRAGLLSRA 808

Query: 375 IDLFLEMEETGTKPDQVTFIALLSAC 400
            +   EM     KPD + +  LLSAC
Sbjct: 809 KEFIQEMP---IKPDALVWRTLLSAC 831


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/469 (37%), Positives = 257/469 (54%), Gaps = 63/469 (13%)

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           ++ MY   G +  ++      EI   DVV  T +V+      + D AR LFD M +R+ +
Sbjct: 155 VLSMYAALGDVASSRAAFA--EIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHV 212

Query: 294 SWTLMISGMLN----QDAEFKY-------------------KSCASIGALYHGIWVHVYI 330
           +W+ MI+G ++    ++A   +                    +CA IG L  G WVH Y+
Sbjct: 213 AWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYV 272

Query: 331 KKN--QISID-------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           +    Q+SI               +  A ++F  ++E+NVY WTS ++  AM G   + +
Sbjct: 273 RSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECL 332

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCM 432
            LF  ME  G +P+ V+F+A+L  CS  GLVDEG   +D + K    Y + P  +HYGCM
Sbjct: 333 QLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK----YGVDPWPEHYGCM 388

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDL GRAG L+++ +FI  MP+ P   +W +LL A R H +V L ++A   L   +  ND
Sbjct: 389 VDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESEND 448

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
            AHV L+NIYA++     +SR+R  ++  G+KK  G+S IE  G VH+F  G   +P   
Sbjct: 449 AAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYN 508

Query: 553 EIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTI 596
           EI LML E++  L+ QG    + +                H E+LA+AFGLI   E   I
Sbjct: 509 EIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEI 568

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           RIV NLR+C DCH ++K+ S+V+NREIV+RD  RFH F+GG+CSCRDYW
Sbjct: 569 RIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG +    ++F+ +  R+V +W + +S     GM  E L L  +M   G+ P+ V+
Sbjct: 290 MYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVS 349

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            V+++   +    ++ G+     +++  +         +VD+Y + G++ +A   +    
Sbjct: 350 FVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMP 409

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           ++  + V W  L++     N  D  +   D+++
Sbjct: 410 MEPHEGV-WGALLNASRIHNSVDLGKYALDKLL 441


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/537 (34%), Positives = 293/537 (54%), Gaps = 80/537 (14%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMG-MYREGLGLLSKMGAEGVSPDEVTMVSL 199
           G + +  ++F+++P  +V+SW  +I+ Y   G   +E + L  KM               
Sbjct: 9   GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM--------------- 53

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           ISA                           + N L+ MY + G++ +A+K      + E 
Sbjct: 54  ISASVNC-----------------------VGNSLISMYARSGRMEDARKAFDI--LFEK 88

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           ++V +  +V GY K+ + +EA  LF+E+ +  +       + +L+          ASIGA
Sbjct: 89  NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS--------GAASIGA 140

Query: 320 LYHGIWVHVYI-----KKNQ------ISI----DNIELAYDLFSEISEKNVYLWTSVIAA 364
           +  G  +H  +     K NQ      IS+     NIE A+ +F+E+ ++NV  WTS+I  
Sbjct: 141 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 200

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           +A  G A +A+++F +M ETGTKP+++T++A+LSACSH G++ EG    +   + + I P
Sbjct: 201 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 260

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +M+HY CMVDLLGR+G L E+  FI SMP+  D  +W +LL ACR H N +L  HA + +
Sbjct: 261 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 320

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P +  A++LL+N++A AG+  D+ +IR  +++  L K+ G S IE    VH+F  G
Sbjct: 321 LEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVG 380

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLI 588
           +  +P + +IY  L+++   +++ G                 ++   QH E++AVAFGLI
Sbjct: 381 ETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLI 440

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           STS+   IRI  NLR+CGDCH+ +K  S    REIV+RD+ RFH  + G CSC DYW
Sbjct: 441 STSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 111/229 (48%), Gaps = 16/229 (6%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLING-YPQEVFAIYLYLVTRTV---------L 136
           G +  ++++  Q  E  +  W +II   + +G   +E   ++  +++ +V         +
Sbjct: 9   GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISM 68

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
             + G++++  + FD L  ++++S+N ++  Y       E   L +++   G+     T 
Sbjct: 69  YARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 128

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            SL+S    +  +  G+ +H  L +   K +  + N L+ MY +CG I  A ++    E+
Sbjct: 129 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN--EM 186

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMISG 301
           ++ +V+ WT++++G+ K      A  +F +M+E     N I++  ++S 
Sbjct: 187 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 235



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG ++   Q+F+++ +R+VISW +MI+ +   G     L +  KM   G  P+E+T
Sbjct: 169 MYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEIT 228

Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V+++SA + +  +  G K+ +   +E  +         +VD+  + G + EA + +   
Sbjct: 229 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 288

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            +   D ++W TL+ G  + +   E  R   EM+
Sbjct: 289 PL-MADALVWRTLL-GACRVHGNTELGRHAAEMI 320


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 185/544 (34%), Positives = 277/544 (50%), Gaps = 53/544 (9%)

Query: 139  KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
            K GKL     +  +   +DV+SW TMI+ YT      + L    +M   G+  DEV + +
Sbjct: 537  KLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTN 596

Query: 199  LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
             +SA   L+ L+ G+ +H     S         N LV +Y +CGKI E+   L   + + 
Sbjct: 597  AVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES--YLAFEQTEA 654

Query: 259  VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF--KYKSCAS 316
             D + W  LVSG+ +S   +EA R+F  M             G+ N +  F    K+ + 
Sbjct: 655  GDNIAWNALVSGFQQSGNNEEALRVFVRMNRE----------GIDNNNFTFGSAVKAASE 704

Query: 317  IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
               +  G  VH  I K     +               +I  A   F E+S KN   W ++
Sbjct: 705  TANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAI 764

Query: 362  IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
            I AY+  G   +A+D F +M  +  +P+ VT + +LSACSH GLVD+G  +    +  Y 
Sbjct: 765  INAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYG 824

Query: 422  IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            + PK +HY C+VD+L RAG L  +  FI  MPI PD  +W +LL AC  H+N+++ E A 
Sbjct: 825  LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAA 884

Query: 482  KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
             HL E +P +   +VLL+N+YA + + D     R K+++ G+KK+ G S IE    +H F
Sbjct: 885  HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 944

Query: 542  TSGDIFNPHSEEI--------------------YLMLNEIEMTLQQQGLQETSLQHRERL 581
              GD  +P ++EI                    + +LNE    LQ +        H E+L
Sbjct: 945  YVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNE----LQHEQKDPIIFIHSEKL 1000

Query: 582  AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
            A++FGL+S      I ++ NLR+C DCH+++K  S+V NREI++RD  RFH F+GG CSC
Sbjct: 1001 AISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSC 1060

Query: 642  RDYW 645
            +DYW
Sbjct: 1061 KDYW 1064



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 107/482 (22%), Positives = 201/482 (41%), Gaps = 79/482 (16%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           ++  S+DE  ++HS ++   L  +  +S ++F+F +F GDL  A ++  +  E  I  WN
Sbjct: 96  KTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWN 155

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNK---CGKLKE-------------------- 145
            +I+         EVF +++ +V+  V  N+    G L+                     
Sbjct: 156 KMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 215

Query: 146 --------VC-----------------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
                   VC                 ++FD L  +D  SW  MIS  +      E + L
Sbjct: 216 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 275

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
              M   G+ P      S++SA  K+  LE+G+ LH  + +        + N LV +YF 
Sbjct: 276 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 335

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
            G +  A+ +     + + D V + TL++G  +    ++A  LF  M    L   +  ++
Sbjct: 336 LGNLISAEHIFSN--MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLA 393

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYD 345
            ++         +C++ G L+ G  +H Y  K   + +N               IE A D
Sbjct: 394 SLV--------VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALD 445

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
            F E   +NV LW  ++ AY +    + +  +F +M+     P+Q T+ ++L  C   G 
Sbjct: 446 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 505

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           ++ G       S++     ++  Y C  ++D+  + G L+ + + +       DV  W++
Sbjct: 506 LELGEQI---HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTT 561

Query: 464 LL 465
           ++
Sbjct: 562 MI 563



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 162/362 (44%), Gaps = 49/362 (13%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KC  ++     F +    +V+ WN M+  Y  +   R    +  +M  E + P++ T
Sbjct: 433 LYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYT 492

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++    +L DLE+G+ +H  + ++  +++  + + L+DMY K GK+  A  +L R+ 
Sbjct: 493 YPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA 552

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
               DVV WTT+++GY + N  D+A   F +M++R + S  + ++  ++        +CA
Sbjct: 553 GK--DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVS--------ACA 602

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            + AL  G  +H     +  S D                IE +Y  F +    +   W +
Sbjct: 603 GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 662

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEG 409
           +++ +  +G+ ++A+ +F+ M   G   +  TF + + A S           H  +   G
Sbjct: 663 LVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTG 722

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
           YD    ++ V N          ++ +  + G + ++      +    +VS W++++ A  
Sbjct: 723 YD---SETEVCN---------ALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYS 769

Query: 470 CH 471
            H
Sbjct: 770 KH 771



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 34/324 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     +F  +  RD +++NT+I+  +  G   + + L  +M  +G+ PD  T+ SL+
Sbjct: 337 GNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLV 396

Query: 201 SARTKLRDLEMGKNLHLFLEE----STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            A +    L  G+ LH +  +    S  KI G+LLN    +Y KC  I  A       E+
Sbjct: 397 VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLN----LYAKCADIETALDYFLETEV 452

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
           +  +VVLW  ++  Y   ++   + R+F +M    ++        +L        K+C  
Sbjct: 453 E--NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL--------KTCIR 502

Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
           +G L  G  +H  I K    ++                ++ A+D+    + K+V  WT++
Sbjct: 503 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 562

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           IA Y       KA+  F +M + G + D+V     +SAC+    + EG   +  ++ V  
Sbjct: 563 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSG 621

Query: 422 IKPKMQHYGCMVDLLGRAGHLEES 445
               +     +V L  R G +EES
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEES 645



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 182/421 (43%), Gaps = 64/421 (15%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L    ++FD++P R + +WN MI    S  +  E  GL  +M +E V+P+E T   ++
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 193

Query: 201 SA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            A R      ++ + +H  +    ++ S  + N L+D+Y + G +  A+++     +   
Sbjct: 194 EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-- 251

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           D   W  ++SG  K+    EA RLF +M    ++      S +L+        +C  I +
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLS--------ACKKIES 303

Query: 320 LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H  + K   S D               N+  A  +FS +S+++   + ++I  
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV-YNIK 423
            +  G+ +KA++LF  M   G +PD  T  +L+ ACS  G +  G    +  +++ +   
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSM------------------------------- 452
            K++  G +++L  +   +E + ++                                   
Sbjct: 424 NKIE--GALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 481

Query: 453 ---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRL 508
               I P+   + S+L+ C    +++L E     + +T+  LN     +L ++YAK G+L
Sbjct: 482 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKL 541

Query: 509 D 509
           D
Sbjct: 542 D 542



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 28/266 (10%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
            L ++CGK++E    F++    D I+WN ++S +   G   E L +  +M  EG+  +  
Sbjct: 634 TLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNF 693

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  S + A ++  +++ GK +H  + ++       + N L+ MY KCG I +A+K     
Sbjct: 694 TFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF--L 751

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
           E+   + V W  +++ Y K     EA   FD+M+  N+    + + G+L+        +C
Sbjct: 752 EVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLS--------AC 803

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           + IG +  GI             +++   Y L  +        +  V+     AG   +A
Sbjct: 804 SHIGLVDKGI----------AYFESMNSEYGLSPKPEH-----YVCVVDMLTRAGLLSRA 848

Query: 375 IDLFLEMEETGTKPDQVTFIALLSAC 400
            +   EM     KPD + +  LLSAC
Sbjct: 849 KEFIQEMP---IKPDALVWRTLLSAC 871


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 186/558 (33%), Positives = 299/558 (53%), Gaps = 60/558 (10%)

Query: 136 LLNKCGKLKEVCQLFDKL------PNRDVISWNTMISCYTSMGMYREGLGLLSKM----G 185
           LLN+   +  V Q+  ++      PN    +WN +I  Y+   ++++   LL K      
Sbjct: 20  LLNQSNSISHVKQIHAQILRTIHTPNS--FTWNILIQSYSKSTLHKQKAILLYKAIITEQ 77

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
              + PD+ T   ++ A   L  L  GK +H  + +   ++   + N L+  Y  CG + 
Sbjct: 78  ENELFPDKHTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLE 137

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
            A+K+  R   +  +VV W  ++  Y K  + D    +F EM++        M S +   
Sbjct: 138 TARKVFDRM-CEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKVYEPDCYTMQSVI--- 193

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKK------------NQISID------NIELAYDLF 347
                 ++C  +G+L  G+WVH ++ K            N   +D      ++E+A  +F
Sbjct: 194 ------RACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVF 247

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLV 406
             +S ++V  W S+I  +A+ G A+ A+D F+ M +     P+ +TF+ +LSAC+H G+V
Sbjct: 248 EGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMV 307

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           DEG  +    ++ YN++P + HYGC+VDL  RAGH++E+ N ++ MPI PD  IW SLL 
Sbjct: 308 DEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLD 367

Query: 467 AC-RCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           AC + H +V+L+E   K + E++  +  GA+VLL+ +YA A R +D+  +R  + D G+ 
Sbjct: 368 ACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVS 427

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ-----------------Q 567
           K+ G SLIE  G  H+F +GD  +P S++IY  +NEI+  L+                  
Sbjct: 428 KKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEIN 487

Query: 568 QGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
           +G Q T   H ERLA+AFGL+++     IR+  NLR+C DCH   K+ S++YN EI++RD
Sbjct: 488 EGKQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRD 547

Query: 628 NGRFHRFQGGQCSCRDYW 645
             RFH F+ G CSC DYW
Sbjct: 548 RVRFHHFKDGSCSCMDYW 565


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/526 (34%), Positives = 287/526 (54%), Gaps = 44/526 (8%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSK-MGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           P+ D   +NT+I  Y+     +    L  + M   GV+P++ T   ++     +  L +G
Sbjct: 85  PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLG 144

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE--AQKLLGRYEIDEVDVVLWTTLVSG 270
           K +H  + +   +    +LN L+ MY   G+ G   A+K+    +  ++D V W+ +++G
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFD--DSPKMDTVTWSAMIAG 202

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
           +V+      A  LF EM    +    + +  +L+        +CA +GAL  G WV  Y+
Sbjct: 203 FVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLS--------ACADLGALELGKWVESYV 254

Query: 331 KKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           +K  I          ID      N++ A  LF ++  + +  WTSVIA  AM G    A+
Sbjct: 255 EKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAV 314

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
            LF EM E G  PD V FI +LSACSH GLVD+G  +     R ++I PK++HYGCMVDL
Sbjct: 315 SLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDL 374

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           L R G ++E+  F+  MP  P+  IW +++ AC     +KL E   K L +++P+++  +
Sbjct: 375 LCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNY 434

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           VLL+NIYAK  + +  +++R  +   G+KK  G ++IE    +++F +GD  +   +EIY
Sbjct: 435 VLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIY 494

Query: 556 LMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTIRIV 599
            M++E+   +++ G   T+ Q                H E+LA+AF L++T   T+IRIV
Sbjct: 495 EMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIV 554

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C DCHS  K  S+VYNREIV+RD  RFH F+ G CSCRD+W
Sbjct: 555 KNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 125/257 (48%), Gaps = 28/257 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD  P  D ++W+ MI+ +  +G     + L  +M   GV PDE+TMVS++SA   L 
Sbjct: 183 KVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLG 242

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            LE+GK +  ++E+  +  S  L N L+DM+ KCG + +A KL    ++D   +V WT++
Sbjct: 243 ALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLF--RQMDSRTIVSWTSV 300

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++G        +A  LFDEMVE  +    +   G+L+        +C+  G +  G +  
Sbjct: 301 IAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLS--------ACSHSGLVDKGRYYF 352

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
             +++N   +  +E                +  ++      G  ++A +   +M     +
Sbjct: 353 GSMERNFSIVPKVE---------------HYGCMVDLLCRGGFVKEAFEFVQKMP---FE 394

Query: 388 PDQVTFIALLSACSHGG 404
           P+Q+ +  +++AC   G
Sbjct: 395 PNQIIWRTIITACHATG 411



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 78/156 (50%), Gaps = 4/156 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG + +  +LF ++ +R ++SW ++I+     G   + + L  +M   G++PD+V 
Sbjct: 272 MFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVA 331

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            + ++SA +    ++ G+  +    E    I   + +Y  +VD+  + G + EA + + +
Sbjct: 332 FIGVLSACSHSGLVDKGR-YYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQK 390

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
               E + ++W T+++    + E      +  E+++
Sbjct: 391 MPF-EPNQIIWRTIITACHATGELKLGESISKELIK 425


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 194/695 (27%), Positives = 330/695 (47%), Gaps = 93/695 (13%)

Query: 34  FANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           ++ V P       V  +C+   + E   ++H+ ++ T   +D   +  + +     GD+ 
Sbjct: 195 WSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIH 254

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN------------ 138
            A  +  +  + ++  WN+ I   +++G+ Q    + L + +  ++ N            
Sbjct: 255 MAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACA 314

Query: 139 -------------------------------------KCGKLKEVCQLFDKLPNRDVISW 161
                                                K G L +  ++F+ +P +D++ W
Sbjct: 315 GAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLW 374

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N +IS  +  G + E L L  +M  EG   +  T+ +++ +   L  +     +H   E+
Sbjct: 375 NALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEK 434

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
                   ++N L+D Y+KC  +  A K+   +  D  +++ +T++++   + +  ++A 
Sbjct: 435 IGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSD--NIIAFTSMITALSQCDHGEDAI 492

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--- 338
           +LF EM+ + L     ++S +LN        +CAS+ A   G  VH ++ K +   D   
Sbjct: 493 KLFMEMLRKGLEPDPFVLSSLLN--------ACASLSAYEQGKQVHAHLIKRKFMTDVFA 544

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                       +IE A   FS + +K V  W+++I   A  GH ++A+D+F  M +   
Sbjct: 545 GNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERI 604

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
            P+ +T  ++L AC+H GLVDE   + S    ++ I    +HY CM+DLLGRAG L+++ 
Sbjct: 605 APNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 664

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             + SMP   + ++W +LL A R H++ +L + A + L   +P   G HVLLAN YA AG
Sbjct: 665 ELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAG 724

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE------ 560
             D+++++R  ++D  +KK+   S +E    VH F  GD  +P + +IY  L E      
Sbjct: 725 MWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMS 784

Query: 561 -------IEMTLQQQGLQETSL---QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
                  +E+ L      E  L    H ERLAVAF LIST     IR+  NLRIC DCH 
Sbjct: 785 KAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHV 844

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             K  S++ +REI+IRD  RFH F  G CSC DYW
Sbjct: 845 AFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 143/639 (22%), Positives = 237/639 (37%), Gaps = 113/639 (17%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           IH+HL+ + L+        +  F       G A+++  +  +P    W+S++     N  
Sbjct: 26  IHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNAL 83

Query: 120 PQEVFAIYLYLVTRTVLLN--------KC------------------------------- 140
           P+E  A +  +  R V  N        KC                               
Sbjct: 84  PREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVA 143

Query: 141 -----GKLKEVCQLFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
                G + E  ++FD+   +R+ +SWN M+S +       + + L  +M   GV P+E 
Sbjct: 144 MYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEF 203

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
               +++A T  RDLE G+ +H  +  +         N LVDMY K G I  A  + G+ 
Sbjct: 204 GFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGK- 262

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN---------- 304
            + + DVV W   +SG V       A  L  +M    L+     +S +L           
Sbjct: 263 -VPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAF 321

Query: 305 ----QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTS 360
               Q   F  K+CA          V +Y K        ++ A  +F  I  K++ LW +
Sbjct: 322 ALGRQIHGFMIKACADSDDYIGVALVDMYAKYGL-----LDDARKVFEWIPRKDLLLWNA 376

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL-SACSHGGLVD--------EGYD 411
           +I+  +  G   +++ LF  M + G+  ++ T  A+L S  S   + D        E   
Sbjct: 377 LISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIG 436

Query: 412 FLSKKSRV--------------YNIKPKMQH-------YGCMVDLLGRAGHLEESANFIT 450
           FLS    V              Y  K   +H       +  M+  L +  H E++     
Sbjct: 437 FLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFM 496

Query: 451 SM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHVLLANIYAKAG 506
            M    + PD  + SSLL AC      +  +    HL +   + D  A   L   YAK G
Sbjct: 497 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCG 556

Query: 507 RLDDMSRIRMKLRDMGL---KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEI----YLMLN 559
            ++D       L D G+      +G  L + G   H   + D+F    +E     ++ L 
Sbjct: 557 SIEDADLAFSGLPDKGVVSWSAMIG-GLAQHG---HGKRALDVFRRMVDERIAPNHITLT 612

Query: 560 EIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRI 598
            +       GL + +  +   +   FG+  T E  +  I
Sbjct: 613 SVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMI 651


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 297/545 (54%), Gaps = 49/545 (8%)

Query: 129 YLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           +LV + +++N   KCG L +  ++FD++P +D+++W  +I+ ++     R+ L L  +M 
Sbjct: 122 HLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQML 181

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
             G  P+  T+ SL+ A      L+ G  LH F  +   + S  + + LVDMY +CG + 
Sbjct: 182 RLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMD 241

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
            AQ  L    +     V W  L+SG+ +  E + A  L  +M  +N        S +L+ 
Sbjct: 242 AAQ--LAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLS- 298

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLFSEI 350
                  +CASIGAL  G WVH ++ K+ + +                +I+ A  +F  +
Sbjct: 299 -------ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL 351

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG- 409
            + +V  W +++   A  G  ++ +D F +M   G +P++++F+ +L+ACSH GL+DEG 
Sbjct: 352 VKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGL 411

Query: 410 -YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
            Y  L KK   Y ++P + HY   VDLLGR G L+ +  FI  MPI P  ++W +LL AC
Sbjct: 412 YYFELMKK---YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGAC 468

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H+N++L  +A +   E DP + G  +LL+NIYA AGR  D++++R  +++ G+KKQ  
Sbjct: 469 RMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPA 528

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QET 573
            S +E    VH F + D  +P  +EI     EI   +++ G                +E 
Sbjct: 529 CSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREE 588

Query: 574 SLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
            LQ H E+LA+AF L++T   + IRI  N+R+CGDCH+ +K  S+V +REI++RD  RFH
Sbjct: 589 KLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFH 648

Query: 633 RFQGG 637
           RF+ G
Sbjct: 649 RFRDG 653



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 146/310 (47%), Gaps = 26/310 (8%)

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLV 235
           GL  L  +    + PD      L+   T+L  +E G+ +H  L +S    +  +L N +V
Sbjct: 71  GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           +MY KCG + +A+++    E+   D+V WT L++G+ ++N   +A  LF +M+       
Sbjct: 131 NMYAKCGCLDDARRMFD--EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPN 188

Query: 296 TLMISGMLNQD-AEFKYKSCASIGA--LYHGIWVHVYIKKNQIS-------IDNIELAYD 345
              +S +L    +E        + A  L +G    VY+    +        +D  +LA+D
Sbjct: 189 HFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFD 248

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
                SE +   W ++I+ +A  G  + A+ L  +M+    +P   T+ ++LSAC+  G 
Sbjct: 249 GMPTKSEVS---WNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGA 305

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYG----CMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           +++G     K    + IK  ++        ++D+  +AG ++++      + + PDV  W
Sbjct: 306 LEQG-----KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSW 359

Query: 462 SSLLRACRCH 471
           +++L  C  H
Sbjct: 360 NTMLTGCAQH 369


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 208/689 (30%), Positives = 331/689 (48%), Gaps = 90/689 (13%)

Query: 34  FANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           +A + P       V RSC+   +  R   +H+H++  +   D  +   +    V  GD+ 
Sbjct: 128 WAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVV 187

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLY---------LVTRTVLLNKC- 140
            A+ +  +    +   WN++I     N    E   ++           L+T T +++ C 
Sbjct: 188 SARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACE 247

Query: 141 -------------------------------------GKLKEVCQLFDKLPNRDVISWNT 163
                                                G  KE   +F  +  RDV+SW T
Sbjct: 248 LLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTT 307

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           +IS      +  + L     M   G  PDEVT+ S++SA   L  L+MG  LH   E + 
Sbjct: 308 IISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTG 367

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
             +   + N L+DMY KC +I +A ++   ++I + DV+ WT++++G   +N   EA   
Sbjct: 368 HILYVVVANSLIDMYSKCKRIEKALEIF--HQIPDKDVISWTSVINGLRINNRCFEALIF 425

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI--E 341
           F +M+ ++  +   +IS +          +CA +GAL  G  +H +  K  +  D     
Sbjct: 426 FRKMILKSKPNSVTLISAL---------SACARVGALMCGKEIHAHALKAGMGFDGFLPN 476

Query: 342 LAYDLFSE------------ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
              DL+              ++EK+V  W  ++  YA  G     ++LF  M E+   PD
Sbjct: 477 AILDLYVRCGRMRTALNQFNLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPD 536

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            VTFI+LL ACS  G+V EG ++  +    Y+I P ++HY C+VDLLGRAG L E+  FI
Sbjct: 537 DVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFI 596

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             MPI PD +IW +LL ACR H++V L E A +H+ + D  + G ++LL N+YA +G+ D
Sbjct: 597 ERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWD 656

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           +++++R  +++ GL    G S +E  G VH F SGD F+P  +EI ++L      ++  G
Sbjct: 657 EVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSG 716

Query: 570 L--QETS-------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
              QE S               H ER A+A+ LI+++    I +  NL +C  CHS +K 
Sbjct: 717 FNGQECSSMDGIQTSKADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKF 776

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
            S++  REI +RD  +FH F+ G CSC D
Sbjct: 777 ISKIVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 160/348 (45%), Gaps = 35/348 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +     +F ++  RD+ SWN ++  YT  G + E L L  ++   G+ PD  T  S++
Sbjct: 83  GDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVL 142

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            +     DL  G+ +H  +      +   ++N L+ MY KCG +  A+ L  +  +   D
Sbjct: 143 RSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDK--MPTRD 200

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + W  ++SGY +++E  E   LF  M    ++ +L++ T +IS            +C  
Sbjct: 201 RISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVIS------------ACEL 248

Query: 317 IGALYHGIWVHVYIKKNQ---------------ISIDNIELAYDLFSEISEKNVYLWTSV 361
           +G    G  +H Y+ +                 +S+ + + A  +FS +  ++V  WT++
Sbjct: 249 LGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTI 308

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I+         KA++ +  ME TGT PD+VT  ++LSAC+  G +D G        R  +
Sbjct: 309 ISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGH 368

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
           I   +     ++D+  +   +E++      +P   DV  W+S++   R
Sbjct: 369 ILYVVVA-NSLIDMYSKCKRIEKALEIFHQIP-DKDVISWTSVINGLR 414


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/535 (34%), Positives = 299/535 (55%), Gaps = 48/535 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP--DEVTMVSLISARTK 205
           + FD++P+ + +    M S Y    +    L L   M A   +   DE   +   SA  +
Sbjct: 5   RAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASAR 64

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK--IGEAQKLLGRYEIDEVDVVL 263
           + D  +  +LH  + +   + +  ++N ++D Y K G   +  A+K+   ++  E DVV 
Sbjct: 65  VPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKV---FDTMERDVVS 121

Query: 264 WTTLVSGYVKSNERDEARRLFDEM--VERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
           W ++++ Y ++    EA  L+ +M  V   +    + +S +L         +CA  GA+ 
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVL--------LACAHAGAIQ 173

Query: 322 HGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYA 366
            G  +H           VY+  + + +      +E+A   F +I EKN+  W+++I  Y 
Sbjct: 174 TGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYG 233

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
           M G  Q+A+++F EM+ +G +P+ +TFI++L+ACSH GL+DEG  + +   + + I+  +
Sbjct: 234 MHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGV 293

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HYGCMVDLLGRAG L+E+ + I  M + PD +IW +LL ACR H+NV+LAE + K L E
Sbjct: 294 EHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFE 353

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            D  N G +VLL+NIYA+AG   D+ RIR+ ++   ++K  GYS  E  G ++ F  GD 
Sbjct: 354 LDASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDK 413

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLIST 590
            +P   EIY  L ++   +Q+ G                +E++L+ H E+LAVAF L+++
Sbjct: 414 SHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNS 473

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             ++ I I+ NLR+C DCH+ MK  +++  REI+IRD  RFH F+ G CSCRDYW
Sbjct: 474 VPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 88/180 (48%), Gaps = 27/180 (15%)

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152
            Q++R G E  + +  SI++                       + +KCG+++   + F K
Sbjct: 180 NQVVRMGLEENVYVGTSIVD-----------------------MYSKCGRVEMASRAFRK 216

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +  ++++SW+ MI+ Y   G  +E L + ++M   G+ P+ +T +S+++A +    L+ G
Sbjct: 217 IKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEG 276

Query: 213 KNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +  +  +++    I   + +Y  +VD+  + G + EA  L+   ++ + D  +W  L+S 
Sbjct: 277 RYWYNAMKQE-FGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV-KPDAAIWGALLSA 334


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/536 (32%), Positives = 281/536 (52%), Gaps = 41/536 (7%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L++  +LFD +  R   SW+ ++  Y  +G +     +  ++   G   D+ +   +I
Sbjct: 99  GALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVI 158

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A   L+DL+ G+ +H    +  +     +   LVDMY +C  + +A ++    ++ + D
Sbjct: 159 RACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIF--VKMWKRD 216

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           +  WT ++    +S    E+   FD M  + ++   + +  ++         +CA +GA+
Sbjct: 217 LATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVY--------ACAKLGAM 268

Query: 321 YHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAY 365
                +H YI     S+D               ++E A  +F  +  +NV  W+++IAAY
Sbjct: 269 NKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAY 328

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
              G  +KA++LF  M  +G  P+++TF++LL ACSH GL++EG  F S     Y + P 
Sbjct: 329 GYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPD 388

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
           ++HY CMVDLLGRAG L+E+   I  MP+  D  +W +LL ACR H+++ LAE   + L 
Sbjct: 389 VKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLL 448

Query: 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
           +      G +VLL+NIYA AG+ +DM++ R  +   GL+K  G + IE G  +++F  GD
Sbjct: 449 KLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGD 508

Query: 546 IFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQHRERLAVAFGLIS 589
             +P S EIY ML  +   L+  G    +                  H E+LA+AFGL+ 
Sbjct: 509 KTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLV 568

Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             +   IRI  NLR+CGDCH+F K  S +  + I++RD  RFH F+ G CSCRDYW
Sbjct: 569 LPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/469 (37%), Positives = 257/469 (54%), Gaps = 63/469 (13%)

Query: 234  LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
            ++ MY   G +  ++      EI   DVV  T +V+      + D AR LFD M +R+ +
Sbjct: 1360 VLSMYAALGDVASSRAAFA--EIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHV 1417

Query: 294  SWTLMISGMLN----QDAEFKYK-------------------SCASIGALYHGIWVHVYI 330
            +W+ MI+G ++    ++A   +                    +CA IG L  G WVH Y+
Sbjct: 1418 AWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYV 1477

Query: 331  KKN--QISID-------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            +    Q+SI               +  A ++F  ++E+NVY WTS ++  AM G   + +
Sbjct: 1478 RSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECL 1537

Query: 376  DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCM 432
             LF  ME  G +P+ V+F+A+L  CS  GLVDEG   +D + K    Y + P  +HYGCM
Sbjct: 1538 QLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK----YGVDPWPEHYGCM 1593

Query: 433  VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
            VDL GRAG L+++ +FI  MP+ P   +W +LL A R H +V L ++A   L   +  ND
Sbjct: 1594 VDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESEND 1653

Query: 493  GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
             AHV L+NIYA++     +SR+R  ++  G+KK  G+S IE  G VH+F  G   +P   
Sbjct: 1654 AAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYN 1713

Query: 553  EIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTI 596
            EI LML E++  L+ QG    + +                H E+LA+AFGLI   E   I
Sbjct: 1714 EIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEI 1773

Query: 597  RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            RIV NLR+C DCH ++K+ S+V+NREIV+RD  RFH F+GG+CSCRDYW
Sbjct: 1774 RIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/153 (19%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            + +KCG +    ++F+ +  R+V +W + +S     GM  E L L  +M   G+ P+ V+
Sbjct: 1495 MYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVS 1554

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             V+++   +    ++ G+     +++  +         +VD+Y + G++ +A   +    
Sbjct: 1555 FVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMP 1614

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            ++  + V W  L++     N  D  +   D+++
Sbjct: 1615 MEPHEGV-WGALLNASRIHNSVDLGKYALDKLL 1646


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 183/539 (33%), Positives = 292/539 (54%), Gaps = 43/539 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L    ++F  + ++ + SWN +I  Y      R  L    +M   G+ PD  T+ S
Sbjct: 426 KCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCS 485

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+SA +KL+ L +GK +H F+  + ++    +   ++ +Y  CG++   Q L    E  +
Sbjct: 486 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAME--D 543

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             +V W T+++G++++   + A  LF +MV   +    + +  +        + +C+ + 
Sbjct: 544 NSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTV--------FGACSLLP 595

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNVYLWTSVI 362
           +L  G   H Y  K+ +  DN  +A  +                F+ + EK+   W ++I
Sbjct: 596 SLRLGREAHAYALKHLLE-DNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMI 654

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             Y M G A++AI LF EM+ TG  PD +TF+ +L+AC+H GL+ EG  +L +    + +
Sbjct: 655 MGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGL 714

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           KP ++HY C++D+LGRAG L+ +      M   PDV IW+SLL  CR HQN+++ E    
Sbjct: 715 KPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAA 774

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L   +P     +VLL+N+YA  G+ DD+ ++R ++++M L+K  G S IE  G V  F 
Sbjct: 775 KLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFV 834

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGLQE--TSLQ--------------HRERLAVAFG 586
            G+ F    EEI  + + +EM + + G +   +S+Q              H E+LA+ +G
Sbjct: 835 VGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYG 894

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LI TSE TT+R+  NLRIC DCH+  K+ S+V  REIV+RDN RFH F  G CSC DYW
Sbjct: 895 LIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 102/508 (20%), Positives = 200/508 (39%), Gaps = 75/508 (14%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P +     V ++C+ I +      +H  ++ T L+ D  +   +  F    G +  A ++
Sbjct: 185 PDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKL 244

Query: 96  IRQGDEPEIKIWNSII----------------------------ENQLINGYPQEVFAIY 127
                E  +  WNS+I                            E ++  G     +A+ 
Sbjct: 245 FDIMPERNLVSWNSMIRVFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVK 304

Query: 128 LYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           L L    V+ N       K G + +   +F    N++V+SWNTM+  +++ G       L
Sbjct: 305 LSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDL 364

Query: 181 LSKM--GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
           L +M  G+E V  DEVT+++ +        L   K LH +  +        L N  V  Y
Sbjct: 365 LRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASY 424

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KCG +  AQ++   + I    +  W  L+ GY +S++   +     +M    L+     
Sbjct: 425 AKCGSLSYAQRVF--HGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFT 482

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELA 343
           +  +L+        +C+ + +L  G  VH +I +N +  D                +   
Sbjct: 483 VCSLLS--------ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 534

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             LF  + + ++  W +VI  +   G  ++A+ LF +M   G +P  ++ + +  ACS  
Sbjct: 535 QVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLL 594

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYG----CMVDLLGRAGHLEESANFITSMPIPPDVS 459
             +      L +++  Y +K  ++        ++D+  + G + +S+     +      S
Sbjct: 595 PSLR-----LGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS 649

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTET 487
            W++++     H   K A   F+ +  T
Sbjct: 650 -WNAMIMGYGMHGRAKEAIKLFEEMQRT 676



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 56/301 (18%)

Query: 21  RLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQIST 77
           RL L   +++  K + + P +  V  +  +CS +      + +H  +I   L RD  +  
Sbjct: 462 RLSLDAHLQM--KNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYL 519

Query: 78  QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV-- 135
            V    +  G+L   Q +    ++  +  WN++I   L NG+P+    ++  +V   +  
Sbjct: 520 SVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQP 579

Query: 136 ---------------------------------------------LLNKCGKLKEVCQLF 150
                                                        +  K G + +  ++F
Sbjct: 580 CGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVF 639

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           + L  +   SWN MI  Y   G  +E + L  +M   G +PD++T + +++A      L 
Sbjct: 640 NGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLH 699

Query: 211 MGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            G   +L   +S+  +  +L +Y  ++DM  + G++  A ++      +E DV +W +L+
Sbjct: 700 EGLR-YLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMS-EEPDVGIWNSLL 757

Query: 269 S 269
           S
Sbjct: 758 S 758



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 114/301 (37%), Gaps = 63/301 (20%)

Query: 130 LVTRTVLLNK-CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           L TR + +   CG   +    FD L ++++  WN +IS Y+   +Y E L +  KM ++ 
Sbjct: 122 LCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKT 181

Query: 189 -VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
            + PD  T   +I A   + D+ +G  +H                    +  K G +   
Sbjct: 182 HLLPDNFTFPCVIKACAGISDVGIGLAVH-------------------GLVVKTGLVE-- 220

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
                       D+ +   LVS Y       +A +LFD M ERNL+SW  MI    +   
Sbjct: 221 ------------DLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGD 268

Query: 308 EFKYKS-----------CA-----SIGALYHGIWVHVYIKKNQISIDNIELAYD------ 345
           +  +             CA      +G   HG  V + + K  +  + +   Y       
Sbjct: 269 DGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCII 328

Query: 346 ----LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM--EETGTKPDQVTFIALLSA 399
               +F   + KNV  W +++  ++  G      DL  +M       K D+VT +  +  
Sbjct: 329 DSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPV 388

Query: 400 C 400
           C
Sbjct: 389 C 389



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 56/266 (21%)

Query: 199 LISARTKLRDLEMGKNLHLFLEEST-MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           L+ A  K +D+EMG+ +H  +  ST ++    L   ++ MY  CG   +++       + 
Sbjct: 90  LLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFD--ALR 147

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCA 315
             ++  W  ++S Y ++    E   +F +M+ +         + +L  +  F    K+CA
Sbjct: 148 SKNLFQWNAVISSYSRNELYHEVLEMFIKMISK---------THLLPDNFTFPCVIKACA 198

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            I  +  G+ VH  + K  +  D                +  A  LF  + E+N+  W S
Sbjct: 199 GISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNS 258

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEG 409
           +I  ++  G            ++    PD  T + +L  C+           HG  V   
Sbjct: 259 MIRVFSDNG------------DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLS 306

Query: 410 YDFLSKKSRVYNIKPKM-QHYGCMVD 434
            D   K+  V N    M   +GC++D
Sbjct: 307 LD---KELVVNNALMDMYSKWGCIID 329


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 198/636 (31%), Positives = 315/636 (49%), Gaps = 76/636 (11%)

Query: 49  RSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           +SC+   S+   +++H  L+ +    D  I   +       GD   A  +  +     ++
Sbjct: 52  QSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGR-----MR 106

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
             N +  N LINGY                   + G L    ++FD++P+R + +WN MI
Sbjct: 107 KKNYMSSNILINGYV------------------RAGDLVNARKVFDEMPDRKLTTWNAMI 148

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           +         EGL L  +M   G SPDE T+ S+ S    LR + +G+ +H +  +  ++
Sbjct: 149 AGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLE 208

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           +   + + L  MY + GK+ + + ++    +   ++V W TL+ G  ++   +    L+ 
Sbjct: 209 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR--NLVAWNTLIMGNAQNGCPETVLYLYK 266

Query: 286 EM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH---VYIKKNQISID 338
            M       N I++  ++S            SC+ +     G  +H   + I  + +   
Sbjct: 267 MMKISGCRPNKITFVTVLS------------SCSDLAIRGQGQQIHAEAIKIGASSVVAV 314

Query: 339 NIEL------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETG 385
              L            A   FSE  +++  +W+S+I+AY   G   +AI+LF  M E+T 
Sbjct: 315 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTN 374

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
            + ++V F+ LL ACSH GL D+G +        Y  KP ++HY C+VDLLGRAG L+++
Sbjct: 375 MEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQA 434

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
              I SMPI  D+ IW +LL AC  H+N ++A+  FK + + DP +   +VLLAN++A A
Sbjct: 435 EAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASA 494

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
            R  D+S +R  +RD  +KK+ G S  E  G VH+F  GD     S+EIY  L E+ + +
Sbjct: 495 KRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEM 554

Query: 566 QQQGLQETS----------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
           + +G +  +                +QH E+LAVAF L+   E   IRI+ NLR+C DCH
Sbjct: 555 KLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCH 614

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              K  S + NREI +RD  RFH F  G+CSC DYW
Sbjct: 615 VAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 162/377 (42%), Gaps = 53/377 (14%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            I + T  + L  GK LH  L  S       + N+L+ MY K G    A  + GR  + +
Sbjct: 50  FIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGR--MRK 107

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML----NQDA------- 307
            + +    L++GYV++ +   AR++FDEM +R L +W  MI+G++    N++        
Sbjct: 108 KNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM 167

Query: 308 --------EFK----YKSCASIGALYHGIWVHVYIKKNQISID---NIELAY-------- 344
                   E+     +   A + ++  G  +H Y  K  + +D   N  LA+        
Sbjct: 168 HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKL 227

Query: 345 ----DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
                +   +  +N+  W ++I   A  G  +  + L+  M+ +G +P+++TF+ +LS+C
Sbjct: 228 QDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSC 287

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           S   +  +G    ++  ++      +     ++ +  + G L ++A   +      +V +
Sbjct: 288 SDLAIRGQGQQIHAEAIKI-GASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEV-M 345

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           WSS++ A   H     A   F  + E   +       L  +YA +            L+D
Sbjct: 346 WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACS---------HSGLKD 396

Query: 521 MGLKKQLGYSLIEQGGF 537
            GL  +L   ++E+ GF
Sbjct: 397 KGL--ELFDMMVEKYGF 411


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 197/580 (33%), Positives = 303/580 (52%), Gaps = 52/580 (8%)

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
           +R G+E     W   ++     GY  +VF     L     L  KCGK+ E  ++FDK+  
Sbjct: 121 LRSGEET----WRQAVDQ----GYGDDVFVGAAVLN----LYAKCGKMDEAMRVFDKMGR 168

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RD++ W TMI+     G  RE + +  +M  + V  D V M+ LI A T L   +MG ++
Sbjct: 169 RDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSI 228

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           H ++    + +   +   LVDMY K G +  A  +  R      +V+ W+ L+SG+ ++ 
Sbjct: 229 HGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYK--NVISWSALISGFAQNG 286

Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK--- 332
               A +L  +M        ++ +  +L         +C+ +G L  G  VH YI +   
Sbjct: 287 FAGNALQLVVDMQSFGYKPDSVSLVSVL--------LACSQVGFLKLGKSVHGYIVRRLH 338

Query: 333 -----NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
                +   ID      ++  A  +F +IS ++   W ++IA+Y + G  ++A+ LFL+M
Sbjct: 339 FDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQM 398

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
            ET  KPD  TF +LLSA SH GLV++G  + S     Y I+P  +HY CMVDLL RAG 
Sbjct: 399 RETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGR 458

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           +EE+   I SM   P ++IW +LL  C  H    + E A K + E +P + G + L++N 
Sbjct: 459 VEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNF 518

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           +A A R D+++ +R  ++  G+KK  GYS++E  G +H F   D  +   EEI  +L ++
Sbjct: 519 FATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKL 578

Query: 562 EMTLQQQG---------------LQETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRIC 605
           +  ++  G               ++E  L  H ERLA+AFGL++T   T + I  NLR+C
Sbjct: 579 DYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVC 638

Query: 606 GDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GDCH   K  S++ NREIV+RD  RFH F+ G CSC DYW
Sbjct: 639 GDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 175/530 (33%), Positives = 275/530 (51%), Gaps = 25/530 (4%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG L+    +FD +  ++ ++W  ++  YT        L L ++M  EGV  DE     
Sbjct: 235 RCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSI 294

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++     L D +MG+ +H  + +   +   S+   LVD Y KCG I  A +  GR  I E
Sbjct: 295 VLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGR--ISE 352

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ---DAEFKYKSCA 315
            + V W+ L+SG+ +S   ++  ++F  +    ++  + + + +       A     S A
Sbjct: 353 PNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQA 412

Query: 316 SIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
              A+  G+  ++Y +   +++      ++ A   F  I E +   WT++I+ YA  G+A
Sbjct: 413 HGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNA 472

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
            +A+  F  M+  G +P+ VTFIA+L+ACSH GLV E   +L   SR Y +KP + HY C
Sbjct: 473 AEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDC 532

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           M+D   RAG L+E+   I  MP  PD   W SLL  C  H ++KL + A ++L   DP +
Sbjct: 533 MIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGD 592

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
              ++LL N+Y+  G+ ++   +R  + +  LKK++  S I   G VH+F  GD  +P +
Sbjct: 593 TAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQT 652

Query: 552 EEIYLMLNEI----------------EMTLQQQGLQETSLQHRERLAVAFGLISTSEKTT 595
           E IY  L E                 +++      +E  L H E+LA+AFGLIST +   
Sbjct: 653 EAIYSKLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDNAP 712

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I +  NLR C DCH F K  S V  R+IV+RD+ RFH F+ G+CSC DYW
Sbjct: 713 ILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 163/364 (44%), Gaps = 35/364 (9%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG   +V ++FD++  ++++SW  +IS Y   G   + + L S M A G+ P+    +SL
Sbjct: 135 CGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSL 194

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + +      LE+GK +H  +  + +  + ++   + +MY +CG + E  KL+    +D  
Sbjct: 195 LQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWL-EGAKLVFD-GMDAQ 252

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           + V WT L+ GY ++ + + A  LF  M    +     + S +L        K C  +  
Sbjct: 253 NAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVL--------KVCCGLED 304

Query: 320 LYHGIWVHVYIKK----NQISI-----------DNIELAYDLFSEISEKNVYLWTSVIAA 364
              G  +H +I K    +++S+            +IE AY  F  ISE N   W+++I+ 
Sbjct: 305 WDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISG 364

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           ++ +G  +  I +F  +   G   +   + ++  AC+    ++ G      ++    IK 
Sbjct: 365 FSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMG-----SQAHGDAIKR 419

Query: 425 KMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            +  Y      MV +  + G L+ +     S+   PD   W++++     H N   A   
Sbjct: 420 GLVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGNAAEALGF 478

Query: 481 FKHL 484
           F+ +
Sbjct: 479 FRRM 482



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 157/399 (39%), Gaps = 69/399 (17%)

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           +  G  +E    L +M    VS    +   L  A  KLR L  G+ +H  L  +    SG
Sbjct: 63  SKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSG 122

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           S+ N L+ MY  CG   + QK+    E+   ++V W  ++S Y K+ E ++A RLF +M 
Sbjct: 123 SIENCLLRMYCDCGSCIDVQKVFD--EMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQ 180

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI--------SIDN- 339
              +   + +   +L        +SC     L  G  +H ++ + Q+        +I N 
Sbjct: 181 ASGIRPNSAVYMSLL--------QSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNM 232

Query: 340 ------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                 +E A  +F  +  +N   WT ++  Y  A   + A++LF  M   G + D+  F
Sbjct: 233 YVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVF 292

Query: 394 IALLSACS-----------HGGLVDEG-----------YDFLSKKSRVYNI--------K 423
             +L  C            H  +V  G            DF  K   + +         +
Sbjct: 293 SIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISE 352

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           P    +  ++    ++G LE+     TS+    +  +  I++S+ +AC    N+ +   A
Sbjct: 353 PNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQA 412

Query: 481 FKHLTETDPLNDG------AHVLLANIYAKAGRLDDMSR 513
                  D +  G          +  +Y+K GRLD   R
Sbjct: 413 -----HGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARR 446



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 114/276 (41%), Gaps = 52/276 (18%)

Query: 46  MVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP 102
           +V + C  +++++   +IHSH++      +  + T + +F V  GD+  A +   +  EP
Sbjct: 294 IVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEP 353

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN------------------------ 138
               W+++I     +G  ++   I+  L +  V+LN                        
Sbjct: 354 NDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAH 413

Query: 139 -----------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
                                  KCG+L    + F+ +   D ++W  +IS Y   G   
Sbjct: 414 GDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAA 473

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYL 234
           E LG   +M + GV P+ VT +++++A +    +   K  L     +  +K +    + +
Sbjct: 474 EALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCM 533

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +D Y + G + EA +L+ R    E D + W +L+ G
Sbjct: 534 IDTYSRAGLLQEALELINRMPF-EPDAMSWKSLLGG 568



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLL 137
           G L YA++     DEP+   W +II     +G   E    +  +         VT   +L
Sbjct: 439 GRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVL 498

Query: 138 NKC---GKLKEVCQLFDKLPNRD------VISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
             C   G + E  Q    + +RD      +  ++ MI  Y+  G+ +E L L+++M  E 
Sbjct: 499 TACSHSGLVAEAKQYLGSM-SRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFE- 556

Query: 189 VSPDEVTMVSLISARTKLRDLEMGK--NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
             PD ++  SL+       DL++GK    +LF  +        LL  L   + K  + G 
Sbjct: 557 --PDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGH 614

Query: 247 AQKLLGRYEIDEVDVVLWTTL 267
            +KL+   E+ +     W ++
Sbjct: 615 VRKLMAERELKKEVSCSWISV 635


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 182/528 (34%), Positives = 283/528 (53%), Gaps = 41/528 (7%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +F    + ++  WNT+I  Y+        + L   M   G+SP+  T   +++A  KL  
Sbjct: 23  IFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLR 82

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           L  G+ LH  + ++ +     LLN L+ +Y  CG +  A  +    E+ E D   W+T+V
Sbjct: 83  LCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFD--EMPEPDSASWSTMV 140

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           SGY ++ +  E  +L  EM   N+ S    ++ ++          C  +G L  G WVH 
Sbjct: 141 SGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVG--------VCGDLGVLDLGKWVHS 192

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           YI K  + ID               +++ A  +F  ++E++V  W+ +IA YA+ GH +K
Sbjct: 193 YIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEK 252

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A+ LF  M+ +   P+ VTF ++LSA SH GLV++G+         Y I P+++HYGCMV
Sbjct: 253 ALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMV 312

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DL  RAG +  +  FI +MPI P+V +W +LL AC+ H    L EH  + + + DP +  
Sbjct: 313 DLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPE 372

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            +V ++N+YA  GR   + ++R  +++   KKQ G+S IE    VHKF  G+  +P  E+
Sbjct: 373 NYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREK 432

Query: 554 IYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTIR 597
           IY ML+++   L+Q G   +++                 H ERLA+A+GL+ T   + IR
Sbjct: 433 IYGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIR 492

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IV NLR C DCH  +K+ S+VYNREI++RD   FH F+   CSC DYW
Sbjct: 493 IVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 8/139 (5%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG L    ++F  +  RDV +W+ MI+ Y   G   + L L   M    + P+ VT
Sbjct: 212 MYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVT 271

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEE--STMKISGSLLNY--LVDMYFKCGKIGEAQKLL 251
             S++SA +    +E G   H   E   +  KI+  + +Y  +VD++ + G +G A K +
Sbjct: 272 FTSVLSAYSHSGLVEKG---HQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFI 328

Query: 252 GRYEIDEVDVVLWTTLVSG 270
               I E +VVLW TL+  
Sbjct: 329 QTMPI-EPNVVLWRTLLGA 346



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 24/138 (17%)

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           ++  A+ +FS     N+++W ++I  Y+++     AI L+ +M   G  P+  TF  +L+
Sbjct: 16  HVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLN 75

Query: 399 ACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           AC            H  +V  G DF +         P +     ++ L    G ++ +  
Sbjct: 76  ACCKLLRLCEGQELHSQIVKAGLDFET---------PLLNG---LIKLYAACGCMDYACV 123

Query: 448 FITSMPIPPDVSIWSSLL 465
               MP  PD + WS+++
Sbjct: 124 MFDEMP-EPDSASWSTMV 140


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 179/527 (33%), Positives = 280/527 (53%), Gaps = 43/527 (8%)

Query: 154 PNRDVISWNTMISCYTSMGMYR-EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           P+ D   +NT+I  +      +   L   + M    VSP++ T   ++ A   +  LE+G
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV---DVVLWTTLVS 269
             +H  + +   +    + N LV MY  C + G +  +  +   DE    D V W+ ++ 
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIG 306

Query: 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY 329
           GY ++     A  LF EM    +    + +  +L+        +CA +GAL  G W+  Y
Sbjct: 307 GYARAGNSARAVTLFREMQVTGVCPDEITMVSVLS--------ACADLGALELGKWLESY 358

Query: 330 IKKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           I++  I          ID      +++ A  +F E+  + +  WTS+I   AM G   +A
Sbjct: 359 IERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEA 418

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434
           + +F EM E G  PD V FI +LSACSH GLVD+G+ + +    +++I PK++HYGCMVD
Sbjct: 419 VLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVD 478

Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
           +L RAG + E+  F+ +MP+ P+  IW S++ AC     +KL E   K L   +P ++  
Sbjct: 479 MLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESN 538

Query: 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEI 554
           +VLL+NIYAK  R +  +++R  +   G++K  G ++IE    +++F +GD  +   +EI
Sbjct: 539 YVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEI 598

Query: 555 YLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTIRI 598
           Y M+ E+   +++ G   T+ Q                H E+LA+AF L+ST   T IRI
Sbjct: 599 YEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRI 658

Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           V NLR+C DCHS  K  S+VYNREIV+RD  RFH F+ G CSC D+W
Sbjct: 659 VKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 125/257 (48%), Gaps = 28/257 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD+ P +D ++W+ MI  Y   G     + L  +M   GV PDE+TMVS++SA   L 
Sbjct: 288 KVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLG 347

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            LE+GK L  ++E   +  S  L N L+DM+ KCG +  A K+    E+    +V WT++
Sbjct: 348 ALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVF--REMKVRTIVSWTSM 405

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           + G        EA  +FDEM+E+ +    +   G+L+        +C+  G +  G   H
Sbjct: 406 IVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLS--------ACSHSGLVDKG---H 454

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
            Y        + +E  + +  +I       +  ++   + AG   +A++    M     +
Sbjct: 455 YY-------FNTMENMFSIVPKIEH-----YGCMVDMLSRAGRVNEALEFVRAMP---VE 499

Query: 388 PDQVTFIALLSACSHGG 404
           P+QV + ++++AC   G
Sbjct: 500 PNQVIWRSIVTACHARG 516



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG +    ++F ++  R ++SW +MI      G   E + +  +M  +GV PD+V 
Sbjct: 377 MFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVA 436

Query: 196 MVSLISARTKLRDLEMGKNLHLFLE--ESTMKISGSLLNY--LVDMYFKCGKIGEAQKLL 251
            + ++SA +    ++ G   H +    E+   I   + +Y  +VDM  + G++ EA + +
Sbjct: 437 FIGVLSACSHSGLVDKG---HYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFV 493

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
               + E + V+W ++V+      E      +  E++ R
Sbjct: 494 RAMPV-EPNQVIWRSIVTACHARGELKLGESVAKELIRR 531


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 208/693 (30%), Positives = 333/693 (48%), Gaps = 92/693 (13%)

Query: 34  FANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           +A + P       V ++C+ + +  R   IH+H+I      D  +   +    V  GD+ 
Sbjct: 191 WAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDIS 250

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLY---------LVTRTVLLNKC- 140
            A+ +  +  + +   WN++I     NG   E   ++           L+T T + + C 
Sbjct: 251 NARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE 310

Query: 141 -------------------------------------GKLKEVCQLFDKLPNRDVISWNT 163
                                                G+L+E   +F ++ ++DV+SW  
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MI+   S  +  + +     M  EG+ PDE+T+VS++SA   +  L++G  LH    ++ 
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           +     + N L+DMY KC  +  A ++     I   +VV WT+L+ G   +N   EA   
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVF--RNISGKNVVSWTSLILGLRINNRSFEALLF 488

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI--E 341
           F +M E    +   +IS +          +CA IGAL  G  +H +  +  +  D     
Sbjct: 489 FRQMKESMKPNSVTLISVL---------SACARIGALMRGKEIHAHALRTGVGFDGFLPN 539

Query: 342 LAYDLFSEIS------------EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
              D++                +K+V  W  ++  YA  G A+ A++LF +M E    PD
Sbjct: 540 AILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPD 599

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
           ++TFI+LL ACS  G+V EG ++ +     YN+ P ++HY C+VD+LGRAG L+++ +FI
Sbjct: 600 EITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFI 659

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             MPI PD +IW +LL ACR H+NV+L E A K + E D  + G ++LL N+YA  G  D
Sbjct: 660 QDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWD 719

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
            +S++R  +R+ GL    G S +E  G VH F SGD  +  S+EI  +L+     +++ G
Sbjct: 720 KVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENG 779

Query: 570 LQ----------ETS-----LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                       E+S       H ER A+AFGLI+T+    I +  NL +C  CH+ +K 
Sbjct: 780 FGNLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKF 839

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRD--YW 645
            S +  REI +RD   +H F+ G CSC D  YW
Sbjct: 840 ISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 136/288 (47%), Gaps = 33/288 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L +   +F K+  RDV SWN ++  Y   G + E L L  +M    + P+  T  S++
Sbjct: 146 GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
                + D+  GK +H  +     +    + N L+ MY KCG I  A+ L  +  + + D
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDK--MPKRD 263

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + W  ++SGY ++    E   LF  M    V+ +LI+ T + S            +C  
Sbjct: 264 RISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVAS------------ACEL 311

Query: 317 IGALYHGIWVHVYIKKNQ----ISIDN-----------IELAYDLFSEISEKNVYLWTSV 361
           +     G  VH Y+ K++    IS++N           +E A  +FS +  K+V  WT++
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           IA+        KA++ +  ME  G  PD++T +++LSAC+  G +D G
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 97/223 (43%), Gaps = 36/223 (16%)

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           +   N+  A+ +F ++SE++V+ W  ++  YA AG   +A++L+  M     +P+  TF 
Sbjct: 143 VRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFP 202

Query: 395 ALLSACS-----------HGGLVDEGYDF-----------------LSKKSRVYNIKPKM 426
           ++L  C+           H  ++  G++                  +S    +++  PK 
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKR 262

Query: 427 QH--YGCMVD-LLGRAGHLE--ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
               +  M+       G LE  E  + +  + + PD+   +++  AC    N +L     
Sbjct: 263 DRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVH 322

Query: 482 KHLTETDPLND-GAHVLLANIYAKAGRLDDMSRI--RMKLRDM 521
            ++ +++   D   +  L  +Y+  GRL++   +  RM+ +D+
Sbjct: 323 GYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 325/636 (51%), Gaps = 55/636 (8%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSI 110
           C S+++ +++   +   N +    + +   E  +    +G   +++  GD+P   ++ ++
Sbjct: 129 CGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTL 188

Query: 111 IENQLINGYPQEV-FAIYLYLVTRTVLLN------------KCGKLKEVCQLFDKLPNRD 157
           +++ L+N    ++   I+ +++   +  N            KCG L    ++FD++  + 
Sbjct: 189 LKS-LVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKK 247

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
            ++W  ++  YT  G  R+ L L   +  EGV  D      ++ A   L +L  GK +H 
Sbjct: 248 PVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHA 307

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
            + +  ++   S+   LVD Y KC     A +     EI E + V W+ ++SGY + ++ 
Sbjct: 308 CVAKLGLECEVSVGTPLVDFYIKCSSFESACRAF--QEIREPNDVSWSAIISGYCQMSQF 365

Query: 278 DEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS----CASIGALYHGIWVHV-YIKK 332
           +EA + F  +  +N +        +LN    F Y S    C+ +     G  VH   IK+
Sbjct: 366 EEAVKTFKSLRSKNAV--------VLNS---FTYTSIFQACSVLADCNIGGQVHADAIKR 414

Query: 333 NQIS--------------IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           + I                  ++ A+++F  +   ++  WT+ I+ +A  G+A +A+ LF
Sbjct: 415 SLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLF 474

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
            +M   G KP+ VTFIA+L+ACSH GLV++G  +L    R YN+ P + HY CM+D+  R
Sbjct: 475 EKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYAR 534

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
           +G L+E+  F+ +MP  PD   W   L  C  H+N++L + A + L + DP +   +VL 
Sbjct: 535 SGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYVLP 594

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
            N+Y  AG+ ++ + +   + +  LKK+L  S I++ G +H+F  GD  +P S+EIY  L
Sbjct: 595 FNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQEIYEKL 654

Query: 559 NEIEMTLQQQGLQ-------ETSLQHRERLAVAFGLIST--SEKTTIRIVNNLRICGDCH 609
            E +  ++    Q       E  L H ERLA+AFGLIS   + +  I++  NLR C DCH
Sbjct: 655 KEFDGFMEGDMFQCSMTERREQLLDHSERLAIAFGLISVNGNARAPIKVFKNLRACPDCH 714

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            F K  S V   EIVIRD+ RFH F+ G+CSC DYW
Sbjct: 715 EFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 750



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 27/309 (8%)

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G   E      +M   GVS    +   L  A  +LR L  G+ LH  +       S  L 
Sbjct: 60  GKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSVLLQ 119

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N ++ MY +CG + +A KL    E+ +++ V  TT++S Y +    D+A  LF  M+E  
Sbjct: 120 NCVLQMYCECGSLEDADKLFD--EMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESG 177

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY-IKKNQISIDNIEL-------- 342
               + M + +L        KS  +  AL  G  +H + I+    S  +IE         
Sbjct: 178 DKPPSSMYTTLL--------KSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVK 229

Query: 343 ------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
                 A  +F +++ K    WT ++  Y  AG A+ A+ LF+++   G + D   F  +
Sbjct: 230 CGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVV 289

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L AC+    +  G    +  +++  ++ ++     +VD   +    E +      +  P 
Sbjct: 290 LKACASLEELRFGKQIHACVAKL-GLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPN 348

Query: 457 DVSIWSSLL 465
           DVS WS+++
Sbjct: 349 DVS-WSAII 356


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 293/542 (54%), Gaps = 38/542 (7%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG-AEGVSPDEVTMVS 198
           C ++   C++FD + +R +  WN MI+ Y       E L L  +M  + G+  +  TM  
Sbjct: 347 CKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAG 406

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +       + +H F+ +  +     + N L+DMY + GKI  A+++ G+ E  +
Sbjct: 407 VVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKME--D 464

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM--VERNLISWTLMISGMLNQDAEFK-YKSCA 315
            D+V W T+++GYV S   ++A  +  +M  +ER        +S   N         SCA
Sbjct: 465 RDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCA 524

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           ++ AL  G  +H Y  KN ++ D                ++++  +F +I  +NV  W  
Sbjct: 525 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNV 584

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ AY M G++Q AID+   M   G KP++VTFI++ +ACSH G+V+EG        + Y
Sbjct: 585 IVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDY 644

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD-VSIWSSLLRACRCHQNVKLAEH 479
            ++P   HY C+VDLLGRAG ++E+   I  +P   D    WSSLL ACR H N+++ E 
Sbjct: 645 GVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEI 704

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A ++L + +P     +VLLANIY+ AG     + +R  ++  G++K+ G S IE G  VH
Sbjct: 705 AAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVH 764

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAV 583
           KF +GD  +P SE++   L  +   ++++G + +TS                 H E+LA+
Sbjct: 765 KFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAI 824

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFG+++TS  T IR+  NLR+C DCH   K  S+V +REI++RD  RFH F+ G CSC D
Sbjct: 825 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGD 884

Query: 644 YW 645
           YW
Sbjct: 885 YW 886



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 167/375 (44%), Gaps = 50/375 (13%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           T   +  K GKL     L      RD+++WNT++S       + E L  L +M  EGV P
Sbjct: 237 TLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEP 296

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           D  T+ S++ A + L  L  GK LH + L+  ++  +  + + LVDMY  C ++    ++
Sbjct: 297 DGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRV 356

Query: 251 L-GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLNQDAE 308
             G +   +  + LW  +++GY ++   +EA  LF EM E   L++ +  ++G++     
Sbjct: 357 FDGMF---DRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVV----- 408

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
               +C   GA      +H ++ K  +  D                I++A  +F ++ ++
Sbjct: 409 ---PACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR 465

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEME-----------ETGTKPDQVTFIALLSACSH 402
           ++  W ++I  Y  +   + A+ +  +M+               KP+ +T + +L +C+ 
Sbjct: 466 DLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAA 525

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDV 458
              + +G     K+   Y IK  +         +VD+  + G L+ S      +PI  +V
Sbjct: 526 LSALAKG-----KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPI-RNV 579

Query: 459 SIWSSLLRACRCHQN 473
             W+ ++ A   H N
Sbjct: 580 ITWNVIVMAYGMHGN 594



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 184/453 (40%), Gaps = 97/453 (21%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG    V ++FD++  R+ +SWN++IS   S   +   L     M  E V P   T
Sbjct: 138 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFT 197

Query: 196 MVSLISARTKL---RDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           +VS+  A +       L MGK +H + L +   +++  ++N LV MY K GK+  ++ LL
Sbjct: 198 LVSVALACSNFPMPEGLLMGKQVHAYGLRKG--ELNSFIINTLVAMYGKMGKLASSKVLL 255

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
           G +E    D+V W T++S   ++ +  EA     EMV   +      IS +L        
Sbjct: 256 GSFE--GRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVL-------- 305

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNV 355
            +C+ +  L  G  +H Y  KN    +N  +   L                F  + ++ +
Sbjct: 306 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKI 365

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACS-----------HG 403
            LW ++I  YA   + ++A+ LF+EMEE+ G   +  T   ++ AC            HG
Sbjct: 366 GLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHG 425

Query: 404 GLVDEGYD--------FLSKKSRVYNIKPKMQHYGCMVD---------LLG--------- 437
            +V  G D         +   SR+  I    + +G M D         + G         
Sbjct: 426 FVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHED 485

Query: 438 -----------------RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
                            RA  +    N IT M I P  +  S+L +    H       +A
Sbjct: 486 ALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHA------YA 539

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
            K+   TD     A   L ++YAK G L  MSR
Sbjct: 540 IKNNLATDVAVGSA---LVDMYAKCGCL-QMSR 568



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 112/257 (43%), Gaps = 22/257 (8%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           W  ++       + RE +     M   G+ PD     +L+ A   L+D+++GK +H  + 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 221 ESTMKI-SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
           +    + S ++ N LV++Y KCG  G   K+  R  I E + V W +L+S      + + 
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEM 178

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY-IKKNQIS-- 336
           A   F  M++ ++   +  +  +    + F          L  G  VH Y ++K +++  
Sbjct: 179 ALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPE-----GLLMGKQVHAYGLRKGELNSF 233

Query: 337 -IDNIELAYDLFSEISEKNVYL----------WTSVIAAYAMAGHAQKAIDLFLEMEETG 385
            I+ +   Y    +++   V L          W +V+++        +A++   EM   G
Sbjct: 234 IINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEG 293

Query: 386 TKPDQVTFIALLSACSH 402
            +PD  T  ++L ACSH
Sbjct: 294 VEPDGFTISSVLPACSH 310



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L+   ++FD++P R+VI+WN ++  Y   G  ++ + +L  M  +GV P+EVT +S
Sbjct: 560 KCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFIS 619

Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           + +A +    +  G K  +   ++  ++ S      +VD+  + G++ EA +L+     +
Sbjct: 620 VFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRN 679

Query: 258 EVDVVLWTTLVSG 270
                 W++L+  
Sbjct: 680 FDKAGAWSSLLGA 692


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 189/567 (33%), Positives = 301/567 (53%), Gaps = 49/567 (8%)

Query: 118 GYPQEVFAIYLYLVTRTV-----LLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           G  QE  A +  +  R +     L+N   + G L    ++FD++  R+V +WN M+S   
Sbjct: 6   GEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLI 65

Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
                  GL L  +M   G  PDE T+ S++     LR    GK +H ++ +   + +  
Sbjct: 66  QFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLV 125

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           + + L  MY K G +GE +K++    I   +VV W TL++G  ++   +    L++ M  
Sbjct: 126 VGSSLAHMYMKSGSLGEGEKVIKAMRIR--NVVAWNTLIAGNAQNGHFEGVLDLYNMMKM 183

Query: 290 RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH-----------VYIKKNQISID 338
             L    + +  +++  AE        +  L+ G  +H           V +  + IS+ 
Sbjct: 184 SGLRPDKITLVSVISSSAE--------LATLFQGQQIHAEAIKAGANSAVAVLSSLISMY 235

Query: 339 N----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           +    +E +     +    +  LW+S+IAAY   G  ++A+ LF +ME+ G   + VTF+
Sbjct: 236 SKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFL 295

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
           +LL ACSH GL ++G  F       Y +KP+++HY C+VDLLGR+G L+E+   I SMP+
Sbjct: 296 SLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPL 355

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
             DV IW +LL ACR H+N  +A    + +   +P +   +VLL+NI+A A R  D+S++
Sbjct: 356 EADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKV 415

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---- 570
           R  +RD  +KK+ G S +E    V +F+ GD  +P SEEI L L E+   ++ +G     
Sbjct: 416 RTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDT 475

Query: 571 -----------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                      +E SL  H E+LA+AFGL++    + IR++ NLRIC DCH  +K+ S +
Sbjct: 476 ATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDI 535

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NREI++RD  RFH F+ G+CSC DYW
Sbjct: 536 NNREIIVRDTSRFHHFKHGKCSCGDYW 562


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 206/686 (30%), Positives = 336/686 (48%), Gaps = 82/686 (11%)

Query: 11   TETIFEPKLVRLG---LVPKMRISRKFANVCPVSLDVIMVERSCS---SIDEFERIHSHL 64
            T TI      R G   +V K+    +    CP    +  + + CS   ++   + +H+ +
Sbjct: 357  TWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWM 416

Query: 65   ITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVF 124
            +   +  D  +   + +  +      YA+++    +E ++  WN +I   L         
Sbjct: 417  LRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYL--------- 467

Query: 125  AIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
                          + G +++   +F +LP +DV+SWNT++      G  R+ L  L  M
Sbjct: 468  --------------RAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCM 513

Query: 185  GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
               G     VT    +   + L  +E+G+ LH  + +      G + + LV+MY KCG++
Sbjct: 514  VECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRM 573

Query: 245  GEAQKLLGRYEID--------------EVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
              A  +L    +D              +  +V W  +VSGYV + + ++  + F  MV  
Sbjct: 574  DNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRE 633

Query: 291  NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID------------ 338
             ++     ++ +++        +CA+ G L  G  VH Y  K    ID            
Sbjct: 634  LVVVDIRTVTTIIS--------ACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYS 685

Query: 339  ---NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
               +++ A+ +F + +E N+  WTS+I+  A+ G  ++AI LF EM   G  P++VTF+ 
Sbjct: 686  KSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLG 745

Query: 396  LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
            +L+AC H GL++EG  +       Y I P ++H   MVDL GRAGHL E+ NFI    I 
Sbjct: 746  VLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGIS 805

Query: 456  PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
               S+W S L +CR H+NV++ +   + L +  P + GA+VLL+N+ A   R D+ +R+R
Sbjct: 806  HLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVR 865

Query: 516  MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN-----------EIEMT 564
              +   G+KKQ G S I+    +H F  GD  +P  EEIY  L+             ++ 
Sbjct: 866  SLMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVK 925

Query: 565  LQQQGLQETSLQ-----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVY 619
            L  Q ++E   +     H E+LAV FG+I+T+ +T IRI+ NLRIC DCH+F+K  SQ+ 
Sbjct: 926  LVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLL 985

Query: 620  NREIVIRDNGRFHRFQGGQCSCRDYW 645
            +REI++RD  RFH F+ G CSC DYW
Sbjct: 986  DREIILRDIHRFHHFKHGGCSCGDYW 1011



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 101/185 (54%), Gaps = 11/185 (5%)

Query: 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           YL+T  V   K   +    +LFD++P R+  +W  +IS ++  G       L  +M A+G
Sbjct: 329 YLLTLYV---KSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKG 385

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
             P++ T+ SL    +   +L++GK +H ++  + +     L N ++D+Y KC     A+
Sbjct: 386 ACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAE 445

Query: 249 KLLGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           ++   +E+ +E DVV W  ++S Y+++ + +++  +F  +  ++++SW  ++ G++    
Sbjct: 446 RV---FELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLM---- 498

Query: 308 EFKYK 312
           +F Y+
Sbjct: 499 QFGYE 503



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 25/162 (15%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           NYL+ +Y K   +  A+KL    EI + +   WT L+SG+ ++   +   +LF EM  + 
Sbjct: 328 NYLLTLYVKSSNMDHARKLFD--EIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKG 385

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI----------- 340
                  +S +        +K C+    L  G  VH ++ +N I  D +           
Sbjct: 386 ACPNQYTLSSL--------FKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLK 437

Query: 341 ----ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
               E A  +F  ++E +V  W  +I+AY  AG  +K++D+F
Sbjct: 438 CKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMF 479



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 31/167 (18%)

Query: 329 YIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
           Y+    +   N++ A  LF EI ++N   WT +I+ ++ AG ++    LF EM   G  P
Sbjct: 329 YLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACP 388

Query: 389 DQVTFIALLSACS-----------HGGLVDEGYDF----------LSKKSRVYNIKPK-- 425
           +Q T  +L   CS           H  ++  G D           L  K +V+    +  
Sbjct: 389 NQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVF 448

Query: 426 -------MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
                  +  +  M+    RAG +E+S +    +P   DV  W++++
Sbjct: 449 ELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPY-KDVVSWNTIV 494


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 184/547 (33%), Positives = 303/547 (55%), Gaps = 48/547 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP--DE 193
           + + C +  +  + FD++P+ + +    M S Y    +    L L   M A   +   DE
Sbjct: 138 MYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDE 197

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK--IGEAQKLL 251
              +   SA  ++ D  +  +LH  + +   + +  ++N ++D Y K G   +  A+K+ 
Sbjct: 198 AAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKV- 256

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM--VERNLISWTLMISGMLNQDAEF 309
             ++  E DVV W ++++ Y ++    EA  L+ +M  V   +    + +S +L      
Sbjct: 257 --FDTMERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVL------ 308

Query: 310 KYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKN 354
              +CA  GA+  G  +H           VY+  + + +      +E+A   F +I EKN
Sbjct: 309 --LACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 366

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           +  W+++I  Y M G  Q+A+++F EM+ +G +P+ +TFI++L+ACSH GL+DEG  + +
Sbjct: 367 ILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYN 426

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
              + + I+  ++HYGCMVDLLGRAG L+E+ + I  M + PD +IW +LL ACR H+NV
Sbjct: 427 AMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNV 486

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           +LAE + K L E D  N G +VLL+NIYA+A    D+ RIR+ ++   ++K  GYS  E 
Sbjct: 487 ELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFEL 546

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HR 578
            G ++ F  GD  +P   EIY  L ++   +Q+ G                +E++L+ H 
Sbjct: 547 KGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHS 606

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LAVAF L+++  ++ I I+ NLR+C DCH+ MK  +++  REI+IRD  RFH F+ G 
Sbjct: 607 EKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGL 666

Query: 639 CSCRDYW 645
           CSCRDYW
Sbjct: 667 CSCRDYW 673



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 88/180 (48%), Gaps = 27/180 (15%)

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152
            Q++R G E  + +  SI++                       + +KCG+++   + F K
Sbjct: 325 NQVVRMGLEENVYVGTSIVD-----------------------MYSKCGRVEMASRAFRK 361

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +  ++++SW+ MI+ Y   G  +E L + ++M   G+ P+ +T +S+++A +    L+ G
Sbjct: 362 IKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEG 421

Query: 213 KNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +  +  +++    I   + +Y  +VD+  + G + EA  L+   ++ + D  +W  L+S 
Sbjct: 422 RYWYNAMKQE-FGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV-KPDAAIWGALLSA 479


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 177/465 (38%), Positives = 251/465 (53%), Gaps = 56/465 (12%)

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           V MY   G +G A+      EI   DVV  T +V       E D AR LFD M +R+ ++
Sbjct: 244 VSMYAAAGDVGAARAAF--AEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVA 301

Query: 295 WTLMISGMLNQDA---------EFKYK--------------SCASIGALYHGIWVH--VY 329
           W  MI+G ++            E ++               +CA +GAL  G WVH   +
Sbjct: 302 WNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAH 361

Query: 330 IKKNQISI-------------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            +  ++S+               +  A ++F  + E+NVY WTS ++  AM G  +  + 
Sbjct: 362 SRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLA 421

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF  ME TG +P+ VTF+ +L  CS  GLVDEG          + I P ++HYGCMVDL 
Sbjct: 422 LFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLY 481

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG L+++ NFI  MP+ P   +W +LL A R H+NV+L ++A   L   +  ND AHV
Sbjct: 482 GRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHV 541

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+NIYA +     +S +R  ++  G+KK  G S IE GG VH+F  G   +P  +EI +
Sbjct: 542 LLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEM 601

Query: 557 MLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVN 600
           ML E+   L+ QG                +E ++  H E+LA+AFGL++  E   IRIV 
Sbjct: 602 MLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVK 661

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCH + K+ S+V+NREIV+RD  RFH F+ G CSC+DYW
Sbjct: 662 NLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 31/276 (11%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+  +      DP + +         GD+G A+    +   P++    +++   L  G 
Sbjct: 224 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMV-GALATG- 281

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                                G+     +LFD +P RD ++WN MI+ Y   G  RE L 
Sbjct: 282 ---------------------GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALR 320

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  +M   G +  EVT+VS ++A  +L  LE GK +H       M++S +L   L+DMY 
Sbjct: 321 LFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYS 380

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISW 295
           KCG +  A ++     + E +V  WT+ VSG   +    +   LF  M    VE N +++
Sbjct: 381 KCGAVAAAMEVFD--SMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTF 438

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGI--WVHVY 329
            +++ G        + ++C       HGI  W+  Y
Sbjct: 439 VVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHY 474


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 289/534 (54%), Gaps = 49/534 (9%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           +K     F+K+P +D+ SWNT+IS +   G  ++   L S M  +    + V+  ++IS 
Sbjct: 152 VKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMISG 207

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
             +  DLE  + L+  +   ++ +  ++L      Y K GK+  A+++  R  +   ++V
Sbjct: 208 YVEHGDLEAAEELYKNVGMKSVVVETAMLT----GYMKFGKVELAERIFQRMAVK--NLV 261

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            W ++++GYV++   ++  ++F  M+E  +    L +S +L          C+++ AL  
Sbjct: 262 TWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL--------LGCSNLSALPL 313

Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H  + K+ +S D               +++ A+ LF E+  K+V  W ++I+ YA 
Sbjct: 314 GRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQ 373

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G  +KA+ LF +M     KPD +TF+A++ AC+H G VD G  +     + + I+ K  
Sbjct: 374 HGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPV 433

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HY C++DLLGRAG L+E+ + I  MP  P  +I+ +LL ACR H+N+ LAE A ++L   
Sbjct: 434 HYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNL 493

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           DP +   +V LANIYA   + D ++++R  +++  + K  GYS IE     H+F S D  
Sbjct: 494 DPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRL 553

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTS 591
           +P    I+  LNE++  ++  G                 ++  L H E+LA+AFGL+ T+
Sbjct: 554 HPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTA 613

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             T IR+  NLR+CGDCH  +K  S +  REI++RD  RFH F+ G CSC DYW
Sbjct: 614 PGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 108/244 (44%), Gaps = 30/244 (12%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-----YKSC 314
           DVV     ++ +V++ + + AR +F++M  R  ++W  M+SG      + K     +   
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
               ++ + I +  Y++        ++ A   F+++  K++  W ++I+ +A  G  QKA
Sbjct: 132 PEPDSVSYNIMLVCYLRSY-----GVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKA 186

Query: 375 IDLFLEMEETGTKPDQVTFIALLSA-CSHGGL--VDEGYDFLSKKSRVYNIKPKMQHYGC 431
            DLF  M E     + V++ A++S    HG L   +E Y  +  KS V            
Sbjct: 187 FDLFSVMPEK----NGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVET--------A 234

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA----CRCHQNVKLAEHAFKHLTET 487
           M+    + G +E +      M +  ++  W+S++      CR    +K+ +   +     
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAV-KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRP 293

Query: 488 DPLN 491
           +PL+
Sbjct: 294 NPLS 297


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 177/465 (38%), Positives = 251/465 (53%), Gaps = 56/465 (12%)

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           V MY   G +G A+      EI   DVV  T +V       E D AR LFD M +R+ ++
Sbjct: 237 VSMYAAAGDVGAARAAF--AEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVA 294

Query: 295 WTLMISGMLNQDA---------EFKYK--------------SCASIGALYHGIWVH--VY 329
           W  MI+G ++            E ++               +CA +GAL  G WVH   +
Sbjct: 295 WNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAH 354

Query: 330 IKKNQISI-------------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            +  ++S+               +  A ++F  + E+NVY WTS ++  AM G  +  + 
Sbjct: 355 SRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLA 414

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF  ME TG +P+ VTF+ +L  CS  GLVDEG          + I P ++HYGCMVDL 
Sbjct: 415 LFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLY 474

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG L+++ NFI  MP+ P   +W +LL A R H+NV+L ++A   L   +  ND AHV
Sbjct: 475 GRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHV 534

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+NIYA +     +S +R  ++  G+KK  G S IE GG VH+F  G   +P  +EI +
Sbjct: 535 LLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEM 594

Query: 557 MLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVN 600
           ML E+   L+ QG                +E ++  H E+LA+AFGL++  E   IRIV 
Sbjct: 595 MLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVK 654

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCH + K+ S+V+NREIV+RD  RFH F+ G CSC+DYW
Sbjct: 655 NLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 31/276 (11%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+  +      DP + +         GD+G A+    +   P++    +++   L  G 
Sbjct: 217 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMV-GALATG- 274

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                                G+     +LFD +P RD ++WN MI+ Y   G  RE L 
Sbjct: 275 ---------------------GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALR 313

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  +M   G +  EVT+VS ++A  +L  LE GK +H       M++S +L   L+DMY 
Sbjct: 314 LFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYS 373

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISW 295
           KCG +  A ++     + E +V  WT+ VSG   +    +   LF  M    VE N +++
Sbjct: 374 KCGAVAAAMEVFD--SMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTF 431

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGI--WVHVY 329
            +++ G        + ++C       HGI  W+  Y
Sbjct: 432 VVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHY 467


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 208/693 (30%), Positives = 333/693 (48%), Gaps = 92/693 (13%)

Query: 34  FANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           +A + P       V ++C+ + +  R   IH+H+I      D  +   +    V  GD+ 
Sbjct: 191 WAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDIS 250

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLY---------LVTRTVLLNKC- 140
            A+ +  +  + +   WN++I     NG   E   ++           L+T T + + C 
Sbjct: 251 NARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE 310

Query: 141 -------------------------------------GKLKEVCQLFDKLPNRDVISWNT 163
                                                G+L+E   +F ++ ++DV+SW  
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MI+   S  +  + +     M  EG+ PDE+T+VS++SA   +  L++G  LH    ++ 
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
           +     + N L+DMY KC  +  A ++     I   +VV WT+L+ G   +N   EA   
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVF--RNISGKNVVSWTSLILGLRINNRSFEALLF 488

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI--E 341
           F +M E    +   +IS +          +CA IGAL  G  +H +  +  +  D     
Sbjct: 489 FRQMKESMKPNSVTLISVL---------SACARIGALMRGKEIHAHALRTGVGFDGFLPN 539

Query: 342 LAYDLFSEIS------------EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
              D++                +K+V  W  ++  YA  G A+ A++LF +M E    PD
Sbjct: 540 AILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPD 599

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
           ++TFI+LL ACS  G+V EG ++ +     YN+ P ++HY C+VD+LGRAG L+++ +FI
Sbjct: 600 EITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFI 659

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             MPI PD +IW +LL ACR H+NV+L E A K + E D  + G ++LL N+YA  G  D
Sbjct: 660 QDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWD 719

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
            +S++R  +R+ GL    G S +E  G VH F SGD  +  S+EI  +L+     +++ G
Sbjct: 720 KVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENG 779

Query: 570 LQ----------ETS-----LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                       E+S       H ER A+AFGLI+T+    I +  NL +C  CH+ +K 
Sbjct: 780 FGNLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKF 839

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRD--YW 645
            S +  REI +RD   +H F+ G CSC D  YW
Sbjct: 840 ISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 136/288 (47%), Gaps = 33/288 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L +   +F K+  RDV SWN ++  Y   G + E L L  +M    + P+  T  S++
Sbjct: 146 GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVL 205

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
                + D+  GK +H  +     +    + N L+ MY KCG I  A+ L  +  + + D
Sbjct: 206 KTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDK--MPKRD 263

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + W  ++SGY ++    E   LF  M    V+ +LI+ T + S            +C  
Sbjct: 264 RISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVAS------------ACEL 311

Query: 317 IGALYHGIWVHVYIKKNQ----ISIDN-----------IELAYDLFSEISEKNVYLWTSV 361
           +     G  VH Y+ K++    IS++N           +E A  +FS +  K+V  WT++
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           IA+        KA++ +  ME  G  PD++T +++LSAC+  G +D G
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 97/223 (43%), Gaps = 36/223 (16%)

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           +   N+  A+ +F ++SE++V+ W  ++  YA AG   +A++L+  M     +P+  TF 
Sbjct: 143 VRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFP 202

Query: 395 ALLSACS-----------HGGLVDEGYDF-----------------LSKKSRVYNIKPKM 426
           ++L  C+           H  ++  G++                  +S    +++  PK 
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKR 262

Query: 427 QH--YGCMVD-LLGRAGHLE--ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
               +  M+       G LE  E  + +  + + PD+   +++  AC    N +L     
Sbjct: 263 DRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVH 322

Query: 482 KHLTETDPLND-GAHVLLANIYAKAGRLDDMSRI--RMKLRDM 521
            ++ +++   D   +  L  +Y+  GRL++   +  RM+ +D+
Sbjct: 323 GYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 284/546 (52%), Gaps = 81/546 (14%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T +  KCG L +   LFD++ N++V+SWN+MIS Y   G       L  +M + G+ PD+
Sbjct: 197 TNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQ 256

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           VT+ +++SA                                   YF+CG I EA K    
Sbjct: 257 VTISNILSA-----------------------------------YFQCGYIDEACKTF-- 279

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            EI E D V WTT++ G  ++ + ++A  LF EM+  N+      IS +++        S
Sbjct: 280 REIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVS--------S 331

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIEL-----------------AYDLFSEISEKNVY 356
           CA + +L  G  VH   K     +D+  L                 A+ +F  +  +NV 
Sbjct: 332 CARLASLCQGQAVHG--KAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVI 389

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W S+I  YA  G   +A+ L+ EM     KPD +TF+ +LSAC H GLV+ G  +    
Sbjct: 390 SWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSI 449

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           S+++ + P   HY CM++LLGRAG+++++ + I SM   P+  IWS+LL  CR + +V  
Sbjct: 450 SKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNN 509

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
            E A +HL E DP N G +++L+NIYA  GR  D++ +R  +++  +KK   YS IE   
Sbjct: 510 GEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDN 569

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSL---------------QHRER 580
            VHKF + D  +  +E+IY  LN +   LQ+ G   +T+L                H E+
Sbjct: 570 QVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEK 629

Query: 581 LAVAFGLISTSE-KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           LA+AF LI     +T IRI+ N+R+CGDCH FMK  S++  R I++RD  RFH F  G+C
Sbjct: 630 LALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRC 689

Query: 640 SCRDYW 645
           SC+D W
Sbjct: 690 SCKDSW 695



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 14/239 (5%)

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMI 165
           S+ + Q ++G    +F +   L+  + L++   KCG+  +   +F ++  R+VISWN+MI
Sbjct: 337 SLCQGQAVHG-KAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMI 395

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE-STM 224
             Y   G   E L L  +M  E + PD +T V ++SA      +E G+     + +   M
Sbjct: 396 LGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGM 455

Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS----GYVKSNERDEA 280
             +    + ++++  + G + +A  L+      E + ++W+TL+S        +N    A
Sbjct: 456 NPTFDHYSCMINLLGRAGYMDKAVDLIKSMTF-EPNCLIWSTLLSVCRINCDVNNGEMAA 514

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339
           R LF E+   N   + +M+S +    A  ++K  A++ +L     +  +   + I IDN
Sbjct: 515 RHLF-ELDPHNAGPY-IMLSNIYA--ACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDN 569


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 185/510 (36%), Positives = 286/510 (56%), Gaps = 49/510 (9%)

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNL 215
           +V  WNT+I  Y  +G       L  +M   G V PD  T   LI A T + D+ +G+ +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 216 HLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           H  +  S     GSL+   N L+ +Y  CG +  A K+  +  + E D+V W ++++G+ 
Sbjct: 144 HSVVIRSGF---GSLIYVQNSLLHLYANCGDVASAYKVFDK--MPEKDLVAWNSVINGFA 198

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
           ++ + +EA  L+ EM  + +      I  +L+        +CA IGAL  G  VHVY+ K
Sbjct: 199 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLS--------ACAKIGALTLGKRVHVYMIK 250

Query: 333 ---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
                    + + +D       +E A  LF E+ +KN   WTS+I   A+ G  ++AI+L
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310

Query: 378 FLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           F  ME T G  P ++TF+ +L ACSH G+V EG+++  +    Y I+P+++H+GCMVDLL
Sbjct: 311 FKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLL 370

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
            RAG ++++  +I SMP+ P+V IW +LL AC  H +  LAE A   + + +P + G +V
Sbjct: 371 ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYV 430

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+N+YA   R  D+ +IR ++   G+KK  G+SL+E G  VH+F  GD  +P S+ IY 
Sbjct: 431 LLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYA 490

Query: 557 MLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVN 600
            L E+   L+ +G                 +   + H E++A+AF LIST E++ I +V 
Sbjct: 491 KLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVK 550

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
           NLR+C DCH  +K+ S+VYNREIV+RD  R
Sbjct: 551 NLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 140/309 (45%), Gaps = 33/309 (10%)

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGS-----LLNYLVDMYFKCGKIGEAQKLLGRY 254
           +S+ TKLR       +H F     + IS +     L+ YLV +      +  A K+  + 
Sbjct: 27  VSSITKLR------QIHAFSIRHGVSISDAELGKHLIFYLVSLPSP-PPMSYAHKVFSKI 79

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-----VERNLISWTLMISGMLNQDAEF 309
           E   ++V +W TL+ GY +      A  L+ EM     VE +  ++  +I  +    A+ 
Sbjct: 80  E-KPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTM-ADV 137

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAY 365
           +         +  G    +Y++ + + +     ++  AY +F ++ EK++  W SVI  +
Sbjct: 138 RLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGF 197

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK-- 423
           A  G  ++A+ L+ EM   G KPD  T ++LLSAC+  G +      L K+  VY IK  
Sbjct: 198 AENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALT-----LGKRVHVYMIKVG 252

Query: 424 --PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
               +     ++DL  R G +EE+      M     VS W+SL+     +   K A   F
Sbjct: 253 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS-WTSLIVGLAVNGFGKEAIELF 311

Query: 482 KHLTETDPL 490
           K++  T+ L
Sbjct: 312 KYMESTEGL 320



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 50/272 (18%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           E IHS +I +       +   +       GD+  A ++  +  E ++  WNS+I     N
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200

Query: 118 GYPQEVFAIY-----------------------------------LYLV---------TR 133
           G P+E  A+Y                                   +Y++         + 
Sbjct: 201 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 260

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGV 189
            VLL+   +CG+++E   LFD++ +++ +SW ++I      G  +E + L   M   EG+
Sbjct: 261 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 320

Query: 190 SPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
            P E+T V ++ A +    ++ G +      EE  ++        +VD+  + G++ +A 
Sbjct: 321 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 380

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           + +    + + +VV+W TL+       + D A
Sbjct: 381 EYIKSMPM-QPNVVIWRTLLGACTVHGDSDLA 411


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 177/465 (38%), Positives = 251/465 (53%), Gaps = 56/465 (12%)

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           V MY   G +G A+      EI   DVV  T +V       E D AR LFD M +R+ ++
Sbjct: 244 VSMYAAAGDVGAARAAF--AEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVA 301

Query: 295 WTLMISGMLNQDA---------EFKYK--------------SCASIGALYHGIWVH--VY 329
           W  MI+G ++            E ++               +CA +GAL  G WVH   +
Sbjct: 302 WNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAH 361

Query: 330 IKKNQISI-------------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            +  ++S+               +  A ++F  + E+NVY WTS ++  AM G  +  + 
Sbjct: 362 SRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLA 421

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF  ME TG +P+ VTF+ +L  CS  GLVDEG          + I P ++HYGCMVDL 
Sbjct: 422 LFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLY 481

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG L+++ NFI  MP+ P   +W +LL A R H+NV+L ++A   L   +  ND AHV
Sbjct: 482 GRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHV 541

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+NIYA +     +S +R  ++  G+KK  G S IE GG VH+F  G   +P  +EI +
Sbjct: 542 LLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEM 601

Query: 557 MLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVN 600
           ML E+   L+ QG                +E ++  H E+LA+AFGL++  E   IRIV 
Sbjct: 602 MLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVK 661

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCH + K+ S+V+NREIV+RD  RFH F+ G CSC+DYW
Sbjct: 662 NLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 31/276 (11%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+  +      DP + +         GD+G A+    +   P++    +++   L  G 
Sbjct: 224 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMV-GALATG- 281

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                                G+     +LFD +P RD ++WN MI+ Y   G  RE L 
Sbjct: 282 ---------------------GEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALR 320

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  +M   G +  EVT+VS ++A  +L  LE GK +H       M++S +L   L+DMY 
Sbjct: 321 LFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYS 380

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISW 295
           KCG +  A ++     + E +V  WT+ VSG   +    +   LF  M    VE N +++
Sbjct: 381 KCGAVAAAMEVFD--SMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTF 438

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGI--WVHVY 329
            +++ G        + ++C       HGI  W+  Y
Sbjct: 439 VVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHY 474


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 198/610 (32%), Positives = 306/610 (50%), Gaps = 103/610 (16%)

Query: 136 LLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
           L+     LK+V    ++FD++P R+VI  N MI  Y + G Y EG+ +   M    V PD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
             T   ++ A +    + +G+ +H    +  +  +  + N LV MY KCG + EA+ +L 
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEA-------------------------------- 280
             E+   DVV W +LV GY ++   D+A                                
Sbjct: 200 --EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE 257

Query: 281 -----RRLFDEMVERNLISWTLMI-----SGMLNQDAEFKYK------------------ 312
                + +F +M +++L+SW +MI     + M  +  E   +                  
Sbjct: 258 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLP 317

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNI----------------ELAYDLFSEISEKNVY 356
           +C    AL  G  +H YI++ ++ I N+                E A D+F  +  ++V 
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKL-IPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            WT++I+AY  +G    A+ LF +++++G  PD + F+  L+ACSH GL++EG       
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           +  Y I P+++H  CMVDLLGRAG ++E+  FI  M + P+  +W +LL ACR H +  +
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
              A   L +  P   G +VLL+NIYAKAGR ++++ IR  ++  GLKK  G S +E   
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 556

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRER 580
            +H F  GD  +P S+EIY  L+ +   +++ G                +ET L  H E+
Sbjct: 557 IIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEK 616

Query: 581 LAVAFGLISTSEK-----TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
           LA+ F L++T E+      TIRI  NLRICGDCH   K+ SQ+ +REI+IRD  RFH F+
Sbjct: 617 LAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676

Query: 636 GGQCSCRDYW 645
            G CSC DYW
Sbjct: 677 FGVCSCGDYW 686



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
           V + +   S+ ++  A  +F EI E+NV +   +I +Y   G   + + +F  M     +
Sbjct: 78  VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVR 137

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD  TF  +L ACS  G +  G       ++V  +   +     +V + G+ G L E+  
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKV-GLSSTLFVGNGLVSMYGKCGFLSEARL 196

Query: 448 FITSMPIPPDVSIWSSL-------------LRACRCHQNVKLAEHA 480
            +  M    DV  W+SL             L  CR  ++VK++  A
Sbjct: 197 VLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDA 241


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 217/692 (31%), Positives = 336/692 (48%), Gaps = 127/692 (18%)

Query: 51  CSSIDEF---ERIHSHLITTNLM--RDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           C+  ++F   +R+ SH+   NL   +D  I  Q+       G L  AQ +     + ++ 
Sbjct: 32  CARANDFIQAKRLQSHM-ELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVY 90

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
            WN+     L++ Y                   K G ++ +  +FD++P RD +S+NT+I
Sbjct: 91  SWNT-----LLSAYA------------------KMGMVENLHVVFDQMPYRDSVSYNTLI 127

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           +C+ S G   + L +L +M  +G  P + + V+ + A ++L DL  GK +H  +  + + 
Sbjct: 128 ACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLG 187

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK---SNE------ 276
            +  + N + DMY KCG I +A +LL    ID+ +VV W  ++SGYVK    NE      
Sbjct: 188 ENTFVRNAMTDMYAKCGDIDKA-RLLFDGMIDK-NVVSWNLMISGYVKMGNPNECIHLFN 245

Query: 277 --------------------------RDEARRLFDEMVERNLISWTLMISGMLN----QD 306
                                      D+AR LF ++ +++ I WT MI G       +D
Sbjct: 246 EMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREED 305

Query: 307 AEFKY-------------------KSCASIGALYHGIWVHVYIKKNQISIDNIEL----- 342
           A   +                    SCA + +LYHG  VH   K   + IDN  L     
Sbjct: 306 AWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHG--KVVVMGIDNSMLVSSAL 363

Query: 343 ------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                       A  +F  +  +NV  W ++I  YA  G   +A+ L+  M++   KPD 
Sbjct: 364 VDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDN 423

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           +TF+ +LSAC +  +V EG  +    S  + I P + HY CM+ LLGR+G ++++ + I 
Sbjct: 424 ITFVGVLSACINADMVKEGQKYFDSISE-HGIAPTLDHYACMITLLGRSGSVDKAVDLIQ 482

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            MP  P+  IWS+LL  C    ++K AE A  HL E DP N G +++L+N+YA  GR  D
Sbjct: 483 GMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKD 541

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL 570
           ++ +R  +++   KK   YS +E G  VH+F S D ++P   +IY  LN +   LQQ G 
Sbjct: 542 VAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGY 601

Query: 571 Q-ETSL---------------QHRERLAVAFGLISTSEKTT-IRIVNNLRICGDCHSFMK 613
             +T++                H E+LA+AF LI        IRI+ N+R+C DCH FMK
Sbjct: 602 NPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCHVFMK 661

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             S   +R I++RD+ RFH F GG+CSC D W
Sbjct: 662 FASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 189/595 (31%), Positives = 298/595 (50%), Gaps = 68/595 (11%)

Query: 86  TGDLGYAQQI----IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCG 141
           TG+L Y Q I     + G E ++ + N+++   + NG                       
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGC---------------------- 465

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            + +  +L++ + +RD+ISWN  +S     GMY   L +   M  EG  P+  T +S++ 
Sbjct: 466 -VHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
           + + L D+  G+ +H  + ++ +  +  +   L+DMY KC  + +A     R  +   D+
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR--DL 582

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
             WT +++ Y ++N+ ++A   F +M +  +      ++G L+         C+S+ +L 
Sbjct: 583 FTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLS--------GCSSLASLE 634

Query: 322 HGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
            G  +H  + K+    D                +E A  LF  +  ++   W ++I  YA
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G   KA+  F  M + G  PD VTF  +LSACSH GLV+EG +  +   R + I P +
Sbjct: 695 QNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTV 754

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
            H  CMVD+LGR G  +E  +FI  M +  +  IW ++L A + H N+ L E A   L E
Sbjct: 755 DHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE 814

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
             P  + +++LL+NI+A  GR DD+ R+R  +   G+KK+ G S +E  G VH F S D 
Sbjct: 815 LQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDY 874

Query: 547 FNPHSEEIYLMLNEIEMTLQQ-----------QGLQETSLQ-----HRERLAVAFGLIST 590
            +P  +EI+L L+E++  L               + ET  +     H ERLA+ F LIST
Sbjct: 875 SHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIST 934

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S +  IRI  NLRIC DCH  MK  S + N+EIV+RD  RFH F+ G CSC D+W
Sbjct: 935 SSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 163/354 (46%), Gaps = 31/354 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG   +   +F  +   D++ W+ +I+C    G   E + L   M      P++ T
Sbjct: 358 MYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYT 417

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + SL+SA T   +L+ G+++H  + +   +   ++ N LV MY K G + +  KL   YE
Sbjct: 418 ICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL---YE 474

Query: 256 -IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + + D++ W   +SG       D    +F  M+E   I        +L         SC
Sbjct: 475 SMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG--------SC 526

Query: 315 ASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWT 359
           + +  +++G  VH +I KNQ+  +N               +E A   F+ +S ++++ WT
Sbjct: 527 SCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWT 586

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
            +I  YA     +KA++ F +M++ G KP++ T    LS CS    ++ G    S   + 
Sbjct: 587 VIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKS 646

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
            ++   M     +VD+  + G +EE+     ++ I  D   W++++  C   QN
Sbjct: 647 GHVS-DMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTII--CGYAQN 696



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 107/484 (22%), Positives = 202/484 (41%), Gaps = 96/484 (19%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           I++    P+  +W S     L+N Y +  ++ Y  LV                    K+P
Sbjct: 138 IVKDVINPDSHLWVS-----LVNVYAKCRYSAYARLV------------------LAKMP 174

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
           +RDV+SW  +I    + G   + + L  +M  EG+ P+E T+ + + A +    L++GK 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +H    +  + +   + + LVD+Y KCG+I  A K+     + E + V W  L++GY + 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF--IGMPEQNDVTWNVLLNGYAQR 292

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI---- 330
            +     +LF  M+E ++      ++ +L        K CA+   L  G  +H  I    
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVL--------KGCANSKNLKQGQVIHSLIIKCG 344

Query: 331 ---------------KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
                           K  ++ID    A  +F  I + ++ +W+++I      G ++++I
Sbjct: 345 YEGNEFIGCGLVDMYSKCGLAID----AIGVFKTIKKPDIVVWSALITCLDQQGQSEESI 400

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
            LF  M    T P+Q T  +LLSA ++ G +  G    +   + Y  +  +     +V +
Sbjct: 401 KLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTM 459

Query: 436 LGRAGHLEESANFITSM-----------------------PIP-----------PDVSIW 461
             + G + +      SM                       P+            P++  +
Sbjct: 460 YMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTF 519

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA--NIYAKAGRLD--DMSRIRMK 517
            S+L +C C  +V        H+ + + L+D   V  A  ++YAK   L+  D++  R+ 
Sbjct: 520 ISILGSCSCLFDVHYGRQVHAHIIK-NQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLS 578

Query: 518 LRDM 521
           +RD+
Sbjct: 579 VRDL 582


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 180/529 (34%), Positives = 275/529 (51%), Gaps = 40/529 (7%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM----GAEGVSPDEVTMVSLISART 204
           LFD++P RD  SW+ ++S +   G  R  L +  +M    G+ GV  +E T  S ++A T
Sbjct: 115 LFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVD-NEFTASSALAAAT 173

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
             R    G+ LH  +    +     + + L DMY KCG++ +A+ +  R  +   DVV W
Sbjct: 174 AARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVR--DVVSW 231

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------------YK 312
           T +V  Y  +    E  RLF  M+   +       +G+L   AEF              K
Sbjct: 232 TAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTK 291

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
           S A          VH+Y K   +       A  +F  + + ++  WT++I+ YA  G   
Sbjct: 292 SRAGDSCFAESALVHMYSKYGDMGT-----AVRVFRGMPKLDLVSWTAMISGYAQNGQPD 346

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           +A+  F  +  +G +PD VTF+ +LSAC+H GLVD+G          Y I+    HY C+
Sbjct: 347 EALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACV 406

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           +DLL R+G  E +   I +M + P+  +W+SLL  CR H+NV+LA  A + L E +P N 
Sbjct: 407 IDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENP 466

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
             +V LANIYA  G  D++   R  +   G+ K    S IE G  +H F  GD  +P +E
Sbjct: 467 ATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAE 526

Query: 553 EIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTI 596
           ++Y +L ++ + ++++G                 Q+    H ERLAVAFG+I+T +   I
Sbjct: 527 QVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPI 586

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++  NLRICGDCH+ +K+ S++  REI++RD+ RFH F+ G CSCRDYW
Sbjct: 587 KVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +K G +    ++F  +P  D++SW  MIS Y   G   E L     +   G  PD VT
Sbjct: 307 MYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVT 366

Query: 196 MVSLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V ++SA      ++ G ++ H   +E  ++ +      ++D+  + G    A++++   
Sbjct: 367 FVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTM 426

Query: 255 EIDEVDVVLWTTLVSG 270
            + + +  LW +L+ G
Sbjct: 427 SV-KPNKFLWASLLGG 441


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 188/554 (33%), Positives = 289/554 (52%), Gaps = 50/554 (9%)

Query: 128 LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +Y++T  + L +KCGK  +   LFD++   D+IS+N MIS YT        + L  ++ A
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLA 308

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G   +  T+V LI        L++ + +     +  + +  S+   L  +Y +  ++  
Sbjct: 309 SGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER---NLISWTLMISGML 303
           A++L    E  E  +  W  ++SGY ++   D A  LF EM+ +   N ++ T ++S   
Sbjct: 369 ARQLFD--ESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILS--- 423

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                    +CA +GAL  G WVH  IK  ++  +               +I  A  LF 
Sbjct: 424 ---------ACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD 474

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            + +KNV  W ++I  Y + GH ++A+ LF EM ++G  P  VTF+++L ACSH GLV E
Sbjct: 475 LMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSE 534

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G +     +  Y  +P  +HY CMVD+LGRAG L  +  FI  MP+ P  ++W +LL AC
Sbjct: 535 GNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGAC 594

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
             H+N ++A  A K L + DP N G +VLL+NIY+        + +R  ++   L K  G
Sbjct: 595 MIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPG 654

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ------------ 576
            +LIE     + FTSGD  +P +  I+ ML ++   +++ G Q  ++             
Sbjct: 655 CTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKE 714

Query: 577 -----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
                H E+LA+AFGLIST   T IRI+ NLR+C DCH+  K  S++  R IV+RD  RF
Sbjct: 715 LMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRF 774

Query: 632 HRFQGGQCSCRDYW 645
           H F+ G CSC DYW
Sbjct: 775 HHFKNGICSCGDYW 788



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 106/511 (20%), Positives = 220/511 (43%), Gaps = 65/511 (12%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           + +++ +  +I + LI   +  D    T++       G + + +Q+  +  +P++ ++N 
Sbjct: 23  NATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNV 82

Query: 110 IIENQLINGYPQEVFAIYLYLVTRT-------------------------VLLN------ 138
           +I     NG P+    +Y +L  +T                         VLL+      
Sbjct: 83  LIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVD 142

Query: 139 -----------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                            K  + +   ++FD +P RD + WNTMIS ++    + + + + 
Sbjct: 143 GVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVF 202

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
             M   G+S D  T+ ++++A  +L++  +G  +     +  +     +L  L+ +Y KC
Sbjct: 203 VDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKC 262

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           GK  + + L    +ID+ D++ +  ++SGY  ++E + A  LF E++       +  + G
Sbjct: 263 GKSCKGRILFD--QIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVG 320

Query: 302 MLNQDAEFKYKSCASI---GALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKN 354
           ++     F +   + +    +L  GI +   +     ++    + ++ A  LF E  EK+
Sbjct: 321 LIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKS 380

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--YDF 412
           +  W ++I+ Y   G   +AI LF EM      P+ VT  ++LSAC+  G +  G     
Sbjct: 381 LASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHG 439

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
           L K  R   ++  +     +VD+  + G + E+      M +  +V  W++++     H 
Sbjct: 440 LIKSER---LESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHG 495

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           + K A   F  + ++     G    L+ +YA
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGV-TFLSILYA 525


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 182/538 (33%), Positives = 280/538 (52%), Gaps = 46/538 (8%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM----GAEGVSPDEVTMVS 198
           L     LFD++P RD  SW+ ++S +   G  R  L +  +M    G  G   +E T  S
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGAD-NEFTASS 167

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            ++A T  R    G+ LH  +    +     + + L DMY K G++ +A+ +  R  +  
Sbjct: 168 ALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVR- 226

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            DVV WT ++  Y  +    E  RLF  M+   ++      +G+L   AEF   +   +G
Sbjct: 227 -DVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEF---TSEKLG 282

Query: 319 ALYHG---------------IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA 363
              HG                 VH+Y K   +       A  +F  + + ++  WT++I+
Sbjct: 283 KQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGT-----AMRVFRGMPKPDLVSWTAMIS 337

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            YA  G   +A+  F  +  +G +PD VTF+ +LSAC+H GLVD+G          Y I+
Sbjct: 338 GYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIE 397

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
               HY C++DLL R+G  E + + I +MP+ P+  +W+SLL  CR H+NV+LA  A + 
Sbjct: 398 HTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEA 457

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L E +P N   +V LANIYA  G  D++  +R  +   G+ K    S IE G  VH F  
Sbjct: 458 LFEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLV 517

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGL 587
           GD  +P +EEIY +L ++ + ++++G                 Q+    H ERLAVAFG+
Sbjct: 518 GDKSHPQAEEIYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGI 577

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I+T + + I++  NLRICGDCH+ +K+ S++  REI++RD+ RFH F+ G CSCRDYW
Sbjct: 578 IATPKGSPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +K G +    ++F  +P  D++SW  MIS Y   G   E L     + + G  PD VT
Sbjct: 307 MYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVT 366

Query: 196 MVSLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V ++SA      ++ G  + H   ++  ++ +      ++D+  + G    A+ ++   
Sbjct: 367 FVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTM 426

Query: 255 EIDEVDVVLWTTLVSG 270
            + + +  LW +L+ G
Sbjct: 427 PV-KPNKFLWASLLGG 441


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 188/554 (33%), Positives = 289/554 (52%), Gaps = 50/554 (9%)

Query: 128 LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +Y++T  + L +KCGK  +   LFD++   D+IS+N MIS YT        + L  ++ A
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLA 308

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G   +  T+V LI        L++ + +     +  + +  S+   L  +Y +  ++  
Sbjct: 309 SGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER---NLISWTLMISGML 303
           A++L    E  E  +  W  ++SGY ++   D A  LF EM+ +   N ++ T ++S   
Sbjct: 369 ARQLFD--ESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILS--- 423

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                    +CA +GAL  G WVH  IK  ++  +               +I  A  LF 
Sbjct: 424 ---------ACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD 474

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            + +KNV  W ++I  Y + GH ++A+ LF EM ++G  P  VTF+++L ACSH GLV E
Sbjct: 475 LMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSE 534

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G +     +  Y  +P  +HY CMVD+LGRAG L  +  FI  MP+ P  ++W +LL AC
Sbjct: 535 GNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGAC 594

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
             H+N ++A  A K L + DP N G +VLL+NIY+        + +R  ++   L K  G
Sbjct: 595 MIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPG 654

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ------------ 576
            +LIE     + FTSGD  +P +  I+ ML ++   +++ G Q  ++             
Sbjct: 655 CTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKE 714

Query: 577 -----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
                H E+LA+AFGLIST   T IRI+ NLR+C DCH+  K  S++  R IV+RD  RF
Sbjct: 715 LMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRF 774

Query: 632 HRFQGGQCSCRDYW 645
           H F+ G CSC DYW
Sbjct: 775 HHFKNGICSCGDYW 788



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/511 (20%), Positives = 219/511 (42%), Gaps = 65/511 (12%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           + +++ +  +I + LI   +  D    T++       G + + +Q+  +  +P++ ++N 
Sbjct: 23  NATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNV 82

Query: 110 IIENQLINGYPQEVFAIYLYLVTRT-------------------------VLLN------ 138
           +I     NG P+    +Y +L   T                         VLL+      
Sbjct: 83  LIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVD 142

Query: 139 -----------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                            K  + +   ++FD +P RD + WNTMIS ++    + + + + 
Sbjct: 143 GVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVF 202

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
             M   G+S D  T+ ++++A  +L++  +G  +     +  +     +L  L+ +Y KC
Sbjct: 203 VDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKC 262

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           GK  + + L    +ID+ D++ +  ++SGY  ++E + A  LF E++       +  + G
Sbjct: 263 GKSCKGRILFD--QIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVG 320

Query: 302 MLNQDAEFKYKSCASI---GALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKN 354
           ++     F +   + +    +L  GI +   +     ++    + ++ A  LF E  EK+
Sbjct: 321 LIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKS 380

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--YDF 412
           +  W ++I+ Y   G   +AI LF EM      P+ VT  ++LSAC+  G +  G     
Sbjct: 381 LASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHG 439

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
           L K  R   ++  +     +VD+  + G + E+      M +  +V  W++++     H 
Sbjct: 440 LIKSER---LESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHG 495

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           + K A   F  + ++     G    L+ +YA
Sbjct: 496 HGKEALKLFYEMLQSGIPPTGV-TFLSILYA 525


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 184/549 (33%), Positives = 292/549 (53%), Gaps = 46/549 (8%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM-YREGLGLLSKMGAEGVS 190
           T   L  +  +L E  ++F  +  RD +SWNT+I      G    E + +  +M   G S
Sbjct: 244 TLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWS 303

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           P+ VT ++L++  + L   ++   +H  + +  +K   ++ N L+  Y K G++   +++
Sbjct: 304 PNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEI 363

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
             R   +  D V W +++SGY+ +    +A  L   M++R         + +L+      
Sbjct: 364 FSRMS-ERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLS------ 416

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNV 355
             +CA++  L  G+ VH    +  +  D                I+ A   F+ +  +N+
Sbjct: 417 --ACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNL 474

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
           Y W S+I+ YA  GH   A+ LF  M+ +G  PD +TF+ +LSACSH GLVDEG+++   
Sbjct: 475 YSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKS 534

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN-- 473
            + VY + P+++HY CMVDLLGRAG L++  NFI  MPI P++ IW ++L AC C  N  
Sbjct: 535 MTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGAC-CRGNGR 593

Query: 474 -VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
             +L   A + L   DP N   +VLL+N+YA  G+ +DM+R R  +R+  +KK+ G S +
Sbjct: 594 KTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWV 653

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQ 576
                VH F +GD  +P    IY  L E++  ++  G                 +E    
Sbjct: 654 TMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSY 713

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H E+LAVAF +++ +    IRI+ NLR+CGDCHS  K  S+V +R IV+RD+ RFH F+ 
Sbjct: 714 HSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFED 772

Query: 637 GQCSCRDYW 645
           G+CSCRDYW
Sbjct: 773 GKCSCRDYW 781



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 178/379 (46%), Gaps = 49/379 (12%)

Query: 113 NQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG 172
           N L +G+  ++F +   L+   V +  C   +   +LFD++P+R+ ++W  +IS YT  G
Sbjct: 25  NVLKHGFDSDLF-LCNTLINVYVRIGDCVSAR---KLFDEMPDRNGVTWACLISGYTQNG 80

Query: 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISA-------RTKLRDLEMGKNLHLFLEESTMK 225
           M  +  G+L +M  EG  P+     S I A       R K R +  G  +   L ++ + 
Sbjct: 81  MPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVH-GYAIRTGLNDAKVA 139

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           +     N L++MY KCG I  A+ + G   +D+ D V W ++++G  ++   ++A + ++
Sbjct: 140 VG----NGLINMYAKCGDIDHARSVFG-LMVDK-DSVSWNSMITGLDQNKCFEDAVKSYN 193

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK----NQISIDNIE 341
            M +  L+     +   L+        SCAS+G +  G   H    K      +S+ N  
Sbjct: 194 SMRKTGLMPSNFALISALS--------SCASLGCILLGQQTHGEGIKLGLDMDVSVSNTL 245

Query: 342 LAY-----------DLFSEISEKNVYLWTSVIAAYAMAGHA-QKAIDLFLEMEETGTKPD 389
           LA             +FS + E++   W +VI A A +G +  +AI++FLEM   G  P+
Sbjct: 246 LALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPN 305

Query: 390 QVTFIALL---SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           +VTFI LL   S+ S   L  + +  + K    YN+K        ++   G++G +E   
Sbjct: 306 RVTFINLLATVSSLSTSKLSHQIHALILK----YNVKDDNAIENALLACYGKSGEMENCE 361

Query: 447 NFITSMPIPPDVSIWSSLL 465
              + M    D   W+S++
Sbjct: 362 EIFSRMSERRDEVSWNSMI 380


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 184/537 (34%), Positives = 280/537 (52%), Gaps = 40/537 (7%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM----GAEGVSPDEVTMVS 198
           L    +LFD++P RD  +W+ ++S YT  G     L L  +M    G +G   +E T  S
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGAD-NEFTASS 169

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGS---LLNYLVDMYFKCGKIGEAQKLLGRYE 255
            ++A    R    G+ LH  +    +  +G    L + L DMY KCG++ +A+++  R  
Sbjct: 170 ALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMP 229

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE-RNLISWTLMISGMLNQDAEFKYKSC 314
           +   D V WT +V  Y       E  RLF  M+  R +       +G+L   A+F  +S 
Sbjct: 230 VR--DAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVES- 286

Query: 315 ASIGALYHG----------IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364
              G   HG           +    + +      ++  A  +F  +++ ++  WT+VI+ 
Sbjct: 287 --FGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISG 344

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           YA  G  ++A+  F     +G KPD VTF+ +LSAC+H GLVD+G +        Y I+ 
Sbjct: 345 YAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEH 404

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
              HY C++DLL R+G  E +   I +M + P+  +W+SLL  CR H+NV LA  A + L
Sbjct: 405 TADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEAL 464

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            E +P N   +V LANIYA  G  D++  +R  +   G+ K    S IE G  VH F  G
Sbjct: 465 FEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVG 524

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL------------QETSLQ----HRERLAVAFGLI 588
           D  +P ++EIY +L ++ + + ++G              E   Q    H ERLAVAFG+I
Sbjct: 525 DKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGII 584

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +T E + I++  NLRICGDCH+ +K+ SQ+  R+I++RD+ RFH F+ G CSCRDYW
Sbjct: 585 ATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 2/155 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG +    ++F+ +   D++SW  +IS Y   G   E L         G+ PD VT
Sbjct: 313 MYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVT 372

Query: 196 MVSLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            V ++SA      ++ G  + H   E+  ++ +      ++D+  + G+   A+K++G  
Sbjct: 373 FVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNM 432

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
            + + +  LW +L+ G         ARR  + + E
Sbjct: 433 AV-KPNKFLWASLLGGCRIHKNVGLARRAAEALFE 466


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 184/539 (34%), Positives = 289/539 (53%), Gaps = 41/539 (7%)

Query: 138  NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            +K GK++E   LF    + D+  WN M+  Y      ++ L L S +   G   D++T+ 
Sbjct: 1052 SKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLA 1111

Query: 198  SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            +   A   L  L+ GK +H    ++       + + ++DMY KCG +  A  +     I 
Sbjct: 1112 TAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNY--IS 1169

Query: 258  EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
              D V WT+++SG V +   D+A R++  M +  ++      + ++      K  SC  +
Sbjct: 1170 APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLI------KASSC--V 1221

Query: 318  GALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVI 362
             AL  G  +H  + K     D               NIE AY LF +++ +N+ LW +++
Sbjct: 1222 TALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAML 1281

Query: 363  AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
               A  G+A++A++LF  M+  G +PD+V+FI +LSACSH GL  E Y++L      Y I
Sbjct: 1282 VGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGI 1341

Query: 423  KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
            +P+++HY C+VD LGRAG ++E+   I +MP     SI  +LL ACR   +V+  +    
Sbjct: 1342 EPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAA 1401

Query: 483  HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
             L   +P +  A+VLL+NIYA A R DD++  R  ++   +KK  G+S I+    +H F 
Sbjct: 1402 RLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFV 1461

Query: 543  SGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFG 586
              D  +P ++ IY  + E+  T+++ G                +E SL  H E+LA+A+G
Sbjct: 1462 VDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYG 1521

Query: 587  LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            LIST   TTIR++ NLR+CGDCH+ +K  S+V+ REIV+RD  RFH F+ G CSC DYW
Sbjct: 1522 LISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 163/353 (46%), Gaps = 28/353 (7%)

Query: 148  QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            ++F+ + + D+ISWN+MIS      +  E + L   +  EG+ PD  T+ S++ A + L 
Sbjct: 960  EVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLI 1019

Query: 208  D-LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            D L + + +H+   ++       +   L+D+Y K GK+ EA+ L      D++D+  W  
Sbjct: 1020 DGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLF--QNKDDLDLACWNA 1077

Query: 267  LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
            ++ GY+  N+  +A  LF  + +    S  + ++           K+C  +  L  G  +
Sbjct: 1078 MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAA--------KACGCLVLLDQGKQI 1129

Query: 327  HVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
            H +  K     D               ++  A  +F+ IS  +   WTS+I+     G+ 
Sbjct: 1130 HAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNE 1189

Query: 372  QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
             +A+ ++  M ++   PD+ TF  L+ A S    +++G    +   ++  +         
Sbjct: 1190 DQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGT-S 1248

Query: 432  MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            +VD+  + G++E++      M +  ++++W+++L     H N + A + FK +
Sbjct: 1249 LVDMYAKCGNIEDAYRLFKKMNV-RNIALWNAMLVGLAQHGNAEEAVNLFKSM 1300



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 177/433 (40%), Gaps = 68/433 (15%)

Query: 135  VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM-----GMYREGLGLLSKMGAEGV 189
             + +KCG L    Q+FD  P RD+++WN ++  Y +      G  +EGL L   + A   
Sbjct: 664  TMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLG 723

Query: 190  SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            S   +T+  ++        L   + +H +  +  ++    +   LV++Y KCG++ +A+ 
Sbjct: 724  STTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARL 783

Query: 250  LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
            L     + E DVVLW  ++ GYV+     EA +LF E     L      +  +LN  +E 
Sbjct: 784  LFDW--MRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV 841

Query: 310  KYKSCASIGALYHGIW----VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
             +           G W    V  Y  K  +S DN              +V+ W   ++  
Sbjct: 842  NWD---------EGKWLADQVQAYAAKLSLSDDN-------------PDVFCWNKKLSEC 879

Query: 366  AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDF-L 413
              AG    AI+ F+ M       D VT + +L+A +           HG  V  G D  +
Sbjct: 880  LWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDV 939

Query: 414  SKKSRVYNIKPK-------------MQH-----YGCMVDLLGRAGHLEESANFITSM--- 452
            S  + + N+  K             M+H     +  M+    ++   EES N    +   
Sbjct: 940  SVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHE 999

Query: 453  PIPPDVSIWSSLLRACRCH-QNVKLAEHAFKHLTETDPLNDG-AHVLLANIYAKAGRLDD 510
             + PD    +S+LRAC      + ++     H  +T  + D      L ++Y+K+G++++
Sbjct: 1000 GLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEE 1059

Query: 511  MSRIRMKLRDMGL 523
               +     D+ L
Sbjct: 1060 AEFLFQNKDDLDL 1072



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 162/349 (46%), Gaps = 59/349 (16%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            + +KCG++++   LFD +  RDV+ WN M+  Y  +G+ +E   L S+    G+ PDE +
Sbjct: 771  IYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFS 830

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            +  +++  +++ + + GK L   ++    K+S      L D                   
Sbjct: 831  VQLILNGVSEV-NWDEGKWLADQVQAYAAKLS------LSD------------------- 864

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKY 311
             D  DV  W   +S  + + +   A   F  M    ++ + ++  ++++ +   D     
Sbjct: 865  -DNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDD---- 919

Query: 312  KSCASIGALYHGIWVHVYIKKNQISIDN-----------IELAYDLFSEISEKNVYLWTS 360
                 +G   HGI V   +  + +S+ N              A ++F+++   ++  W S
Sbjct: 920  ---LELGKQVHGIAVKSGLDSD-VSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNS 975

Query: 361  VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
            +I++ A +   +++++LF+++   G KPD  T  ++L ACS   L+D G + +S++  V+
Sbjct: 976  MISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS--SLID-GLN-ISRQIHVH 1031

Query: 421  NIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             +K            ++D+  ++G +EE A F+       D++ W++++
Sbjct: 1032 ALKTGNIADSFVATTLIDVYSKSGKMEE-AEFLFQNKDDLDLACWNAMM 1079



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 102/245 (41%), Gaps = 32/245 (13%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+       +L +GK  H  +  S       L N L+ MY KCG +  A+++       E
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFD--TTPE 684

Query: 259 VDVVLWTTLVSGY---VKSNERD--EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            D+V W  ++  Y   V SN+ +  E   LF  ++  +L S T M    +        K 
Sbjct: 685 RDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPV-------LKL 736

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           C + G L+    VH Y  K  +  D                +  A  LF  + E++V LW
Sbjct: 737 CLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLW 796

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
             ++  Y   G  ++A  LF E   +G +PD+ +   +L+  S     DEG  +L+ + +
Sbjct: 797 NMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNW-DEG-KWLADQVQ 854

Query: 419 VYNIK 423
            Y  K
Sbjct: 855 AYAAK 859


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 173/473 (36%), Positives = 260/473 (54%), Gaps = 62/473 (13%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDE-VDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
           N L+ +Y   G +  A+++L  Y     +DVV W T+VSGY K  +   AR +F  M ER
Sbjct: 117 NSLLKLYCSLGLLDRARRVL--YSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPER 174

Query: 291 NLISWTLMISGMLNQDA--------------EFK---------YKSCASIGALYHGIWVH 327
           NL+SW+ M+   +                  EF+          K+CA +GA+  G WVH
Sbjct: 175 NLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVH 234

Query: 328 VYI-------KKNQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
            Y+       ++  + ++            +E A+ +F  +  ++V LW ++I   AM G
Sbjct: 235 RYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNG 294

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
           + ++A++LF  M + G  P++ TFIA+L AC+H G VDEG     K  + Y IKP+ +HY
Sbjct: 295 YGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVF-KSMQDYGIKPQREHY 353

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GC+ DLLGRAG++EE+   +  MP+ P  S W +L+ +C+ H ++ + E   K L E +P
Sbjct: 354 GCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEP 413

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            + G +V+L N+YA  GR ++   IR  + D G KK+ G S IE  G VH+F SGD  +P
Sbjct: 414 YDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHP 473

Query: 550 HSEEIYLMLNEIEMTLQQQGLQETSLQ-----------------HRERLAVAFGLISTSE 592
            + +IY +L +IE  LQ  G  + + Q                 H ERLA+AFG+++  +
Sbjct: 474 LTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQ 533

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              IRIV NLR+C DCH   K+ S++Y REI++RD  RFH F+ G CSC DYW
Sbjct: 534 GVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           L+  T L++   KCG +++  Q+FD +  RDV+ WN MI      G     L L  +M  
Sbjct: 249 LMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQ 308

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           +G  P+E T ++++ A T    ++ GK +   +++  +K        L D+  + G + E
Sbjct: 309 KGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEE 368

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           A+ LL    + E     W  L+S     N+ +   R+   ++E
Sbjct: 369 AEALLLDMPM-EPHASQWGALMSSCQMHNDINVGERVGKRLIE 410


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 187/555 (33%), Positives = 299/555 (53%), Gaps = 42/555 (7%)

Query: 122 EVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
           E   + +Y    T LL +C  +++   LF  + +RD I+W TM++  T  G+  E L + 
Sbjct: 208 EAKTVVMYNTLITGLL-RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVF 266

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            +M AEGV  D+ T  S+++A   L  LE GK +H ++  +  + +  + + LVDMY KC
Sbjct: 267 RRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC 326

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
             I  A+ +  R      +++ WT ++ GY ++   +EA R F EM    +      +  
Sbjct: 327 RSIRLAEAVFRRMTCR--NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGS 384

Query: 302 MLNQDAEFKYKSCASIGALYHGIWVHV---------YIKKNQISI------DNIELAYDL 346
           +++        SCA++ +L  G   H          YI  +   +       +IE A+ L
Sbjct: 385 VIS--------SCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F E+S  +   WT+++  YA  G A++ IDLF +M   G KPD VTFI +LSACS  GLV
Sbjct: 437 FDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLV 496

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           ++G D+     + + I P   HY CM+DL  R+G  +E+  FI  MP  PD   W++LL 
Sbjct: 497 EKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           +CR   N+++ + A ++L ETDP N  ++VLL +++A  G+  +++ +R  +RD  +KK+
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKE 616

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE--TSL--------- 575
            G S I+    VH F++ D  +P S  IY  L  +   + ++G +   +S+         
Sbjct: 617 PGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADK 676

Query: 576 -----QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
                 H E+LA+AFGLI   ++  IRIV NLR+C DCH+  K  S++  R+I++RD  R
Sbjct: 677 VHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVR 736

Query: 631 FHRFQGGQCSCRDYW 645
           FH+F  G CSC D+W
Sbjct: 737 FHKFSDGTCSCGDFW 751



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 178/379 (46%), Gaps = 48/379 (12%)

Query: 130 LVTRTVLLNKCGK---LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-G 185
           L TR  LL+       + ++ +LF  +P RD +S+N +I+ ++S G     + L   +  
Sbjct: 79  LFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLR 138

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            E V P  +T+ ++I   + L D  +G ++H  +          + + LVDMY K G I 
Sbjct: 139 EESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIR 198

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
           +A+++    E++   VV++ TL++G ++    ++A+ LF  MV+R+ I+WT M++G+   
Sbjct: 199 DARRVF--QEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQN 256

Query: 306 DAEFK-----------------------YKSCASIGALYHGIWVHVYIKKNQISIDN--- 339
             + +                         +C ++ AL  G  +H YI +     DN   
Sbjct: 257 GLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYE-DNVFV 315

Query: 340 -------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        I LA  +F  ++ +N+  WT++I  Y     +++A+  F EM+  G 
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           KPD  T  +++S+C++   ++EG  F    + V  +   +     +V L G+ G +E++ 
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHC-LALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 447 NFITSMPIPPDVSIWSSLL 465
                M     VS W++L+
Sbjct: 435 RLFDEMSFHDQVS-WTALV 452


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 296/545 (54%), Gaps = 45/545 (8%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY-TSMGMYREGLGLLSKMGAEGVSPDEV 194
            +  +CG++ E  ++F+ +   DV+SWN+++    +S     E + + S M   G+ P++V
Sbjct: 528  MYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKV 587

Query: 195  TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            T V+ ++A T L  LE+GK +H  + +  +    ++ N L+  Y K G +   ++L  R 
Sbjct: 588  TFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRM 647

Query: 255  EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
                 D + W +++SGY+ +    EA      M+    +      S +LN        +C
Sbjct: 648  S-GRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLN--------AC 698

Query: 315  ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
            AS+ AL  G+ +H +  ++ +  D                I+ A  +F  +S+KN + W 
Sbjct: 699  ASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWN 758

Query: 360  SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
            S+I+ YA  G  +KA+++F EM+E+G  PD VTF+++LSACSH GLV+ G D+       
Sbjct: 759  SMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMED- 817

Query: 420  YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN---VKL 476
            Y I P+++HY C++DLLGRAG L++   ++  MP+ P+  IW ++L AC+  ++   + L
Sbjct: 818  YGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDL 877

Query: 477  AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
               A + L E +P N   +VL +  +A  GR +D ++ R  ++   +KK+ G S +    
Sbjct: 878  GTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTD 937

Query: 537  FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---LQETSLQ-------------HRER 580
             VH F +GD  +P+++EIY  LN +   ++  G   L E  L              H E+
Sbjct: 938  GVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEK 997

Query: 581  LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
            LAVAF L  +S    IRI+ NLR+CGDCH+  +  SQ+  R+I++RD+ RFH F+ G+CS
Sbjct: 998  LAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCS 1057

Query: 641  CRDYW 645
            C DYW
Sbjct: 1058 CGDYW 1062



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/356 (20%), Positives = 146/356 (41%), Gaps = 36/356 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE--GVSPDEVTM 196
           K  +L    ++FD +P R+ +SW  +IS +   G+  +   L   M  E  G  P   T 
Sbjct: 112 KGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTF 171

Query: 197 VSLISA--RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC--GKIGEAQKLLG 252
            S++ A   +    L     +H  + ++    + ++ N L+ MY  C  G    AQ++  
Sbjct: 172 GSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFD 231

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLF------DEMVE--------RNLISWTLM 298
              +   D++ W  L+S Y K  +      LF      D  +E         +LI+ T +
Sbjct: 232 TTPVR--DLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYL 289

Query: 299 IS---GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNV 355
            S   G+L+Q      KS  S         V  + +        ++ A D++  + E+N 
Sbjct: 290 SSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGM-----LDEAKDIYLGLKERNA 344

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY----D 411
                +IA      H + A ++F+   ++    +  T++ LLSA +     ++G     +
Sbjct: 345 VTLNGLIAGLVKQQHGEAAAEIFMGARDSAA-VNVDTYVVLLSAIAEFSTAEQGLRKGRE 403

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
             +   R  +I  K+     +V++  + G ++++      M     +S W++++ A
Sbjct: 404 VHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRIS-WNTIITA 458



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 54/202 (26%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA-------- 307
           D+ L   LV+ Y K    D ARR+FD M  RN +SWT +ISG     L +DA        
Sbjct: 99  DLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAML 158

Query: 308 ---------EFKY----KSCASIGA--LYHGIWVHVYIKKNQI----------------- 335
                     F +    ++C   G   L   + VH  + K +                  
Sbjct: 159 REGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSC 218

Query: 336 SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME--ETGT--KPDQV 391
           S+    LA  +F     +++  W ++++ YA  G A     LF  M+  ++G   +P + 
Sbjct: 219 SVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEH 278

Query: 392 TFIAL-----LSACSHGGLVDE 408
           TF +L     LS+CS  GL+D+
Sbjct: 279 TFGSLITATYLSSCSL-GLLDQ 299


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 179/541 (33%), Positives = 284/541 (52%), Gaps = 40/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG + + C++F+++P +D +SW  MI  Y+ +G + E L    KM  E V+ D+  
Sbjct: 150 MYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHV 209

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S + A   L+  + G+++H  + +   +    + N L DMY K G +  A  + G  +
Sbjct: 210 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFG-ID 268

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
            +  +VV +T L+ GYV++ + ++   +F E+  + +       S ++        K+CA
Sbjct: 269 SECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLI--------KACA 320

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
           +  AL  G  +H  + K     D                +E A   F EI +     W S
Sbjct: 321 NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNS 380

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +++ +   G  + AI  F  M + G KP+ +TFI+LL+ CSH GLV+EG D+     + Y
Sbjct: 381 LVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTY 440

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            + P  +HY C++DLLGRAG L+E+  FI  MP  P+   W S L ACR H + ++ + A
Sbjct: 441 GVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLA 500

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L + +P N GA VLL+NIYA   + +D+  +RM++RD  +KK  GYS ++ G   H 
Sbjct: 501 AEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHV 560

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------------LQETSL-QHRERLAVA 584
           F + D  +     IY  L+ +   ++  G               ++E  L +H ER+AVA
Sbjct: 561 FGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVA 620

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           F LIS      I +  NLR+C DCHS +K  S+V  R+I++RDN RFH F  G CSC DY
Sbjct: 621 FALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDY 680

Query: 645 W 645
           W
Sbjct: 681 W 681



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 163/347 (46%), Gaps = 30/347 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG+L    +LFD +P R+++SW  MIS  +    + E +     M   G  P +  
Sbjct: 49  MYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFA 108

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S I A   L  +EMGK +H    +  +     + + L DMY KCG + +A K+    E
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVF--EE 166

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D V WT ++ GY K  E +EA   F +M++  +     ++   L         +C 
Sbjct: 167 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG--------ACG 218

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISE-KNVYLWT 359
           ++ A   G  VH  + K     D               ++E A ++F   SE +NV  +T
Sbjct: 219 ALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYT 278

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
            +I  Y      +K + +F+E+   G +P++ TF +L+ AC++   +++G    ++  ++
Sbjct: 279 CLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 338

Query: 420 -YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++  P +     +VD+ G+ G LE +      +  P +++ W+SL+
Sbjct: 339 NFDEDPFVSSI--LVDMYGKCGLLEHAIQAFDEIGDPTEIA-WNSLV 382



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 151/371 (40%), Gaps = 66/371 (17%)

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D   +  +I    K + L  GK LH  L  +       L N+LV+MY KCG++  A KL 
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
               + + ++V WT ++SG  ++++  EA R F  M     +      S  +        
Sbjct: 64  D--TMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAI-------- 113

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID-----NIELAYD----------LFSEISEKNVY 356
           ++CAS+G++  G  +H    K  I  +     N+E  Y           +F E+  K+  
Sbjct: 114 RACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEV 173

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGL 405
            WT++I  Y+  G  ++A+  F +M +     DQ    + L AC            H  +
Sbjct: 174 SWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV 233

Query: 406 VDEGY-----------DFLSK------KSRVYNIKPKMQH---YGCMVDLLGRAGHLEES 445
           V  G+           D  SK       S V+ I  + ++   Y C++D       +E+ 
Sbjct: 234 VKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKG 293

Query: 446 ANFITSM---PIPPDVSIWSSLLRAC----RCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
            +    +    I P+   +SSL++AC       Q  +L     K   + DP       +L
Sbjct: 294 LSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF---VSSIL 350

Query: 499 ANIYAKAGRLD 509
            ++Y K G L+
Sbjct: 351 VDMYGKCGLLE 361


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 181/520 (34%), Positives = 290/520 (55%), Gaps = 52/520 (10%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L++V   F+ +P RD++SWNT+IS     GM+ + L ++ +MG   + PD  T+ S++
Sbjct: 147 GSLRKV---FEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 203

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
               +  +L  GK +H +   +       + + L+DMY KC ++ ++ ++   Y + + D
Sbjct: 204 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF--YMLPQHD 261

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + W ++++G V++   DE  + F +M    ++ N +S++ ++             +CA 
Sbjct: 262 GISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMP------------ACAH 309

Query: 317 IGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSV 361
           +  L+ G  +H YI +++           +D      NI  A  +F ++   ++  WT++
Sbjct: 310 LTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAM 369

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I  YA+ GHA  AI LF  ME  G KP+ V F+A+L+ACSH GLVDE + + +  ++ Y 
Sbjct: 370 IMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYR 429

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I P ++HY  + DLLGR G LEE+  FI+ M I P  S+WS+LL ACR H+N++LAE   
Sbjct: 430 IIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVS 489

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           K L   DP N GA+VLL+NIY+ AGR  D  ++R+ +RD G+KK+   S IE    VH F
Sbjct: 490 KKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAF 549

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQG--LQETSL--------------QHRERLAVAF 585
            +GD  +P+ + I   L  +   ++++G  L  T +               H ERLA+ F
Sbjct: 550 VAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITF 609

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
           G+IST   TTIR+  NLR+C DCH+  K  S++  REIV 
Sbjct: 610 GIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVF 649



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 127/257 (49%), Gaps = 15/257 (5%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           NGY  +VF I   L+    +  KC ++ + C++F  LP  D ISWN++I+     GM+ E
Sbjct: 225 NGYDADVF-IGSSLID---MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDE 280

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
           GL    +M    + P+ V+  S++ A   L  L +GK LH ++  S    +  + + LVD
Sbjct: 281 GLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVD 340

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNL 292
           MY KCG I  A+ +  + E+   D+V WT ++ GY       +A  LF  M    V+ N 
Sbjct: 341 MYAKCGNIRTARWIFDKMEL--YDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNY 398

Query: 293 ISWTLMISGMLNQ---DAEFKY-KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFS 348
           +++  +++   +    D  +KY  S      +  G+  +  +      +  +E AY+  S
Sbjct: 399 VAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFIS 458

Query: 349 EIS-EKNVYLWTSVIAA 364
           ++  E    +W++++AA
Sbjct: 459 DMHIEPTGSVWSTLLAA 475



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 76/395 (19%), Positives = 141/395 (35%), Gaps = 100/395 (25%)

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M A G  PD     S++ + T ++DL  G+++H  +    M       N L++MY K   
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 244 IGEA-------QKLLGR----------------------------------------YEI 256
           + E         K+LG                                         Y++
Sbjct: 61  LEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQV 120

Query: 257 DEVDVVLWTTLVSGYVKSNERD-----EARRLFDEMVERNLISWTLMISGM----LNQDA 307
           +    V      S      E++       R++F+ M +R+++SW  +ISG     +++DA
Sbjct: 121 NTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDA 180

Query: 308 ---------------EFKYKSCASIGALY----HGIWVHVYIKKNQISID---------- 338
                           F   S   I A Y     G  +H Y  +N    D          
Sbjct: 181 LMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDM 240

Query: 339 -----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                 ++ +  +F  + + +   W S+IA     G   + +  F +M     KP+ V+F
Sbjct: 241 YAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSF 300

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFI 449
            +++ AC+H   +      L K+   Y I+ +          +VD+  + G++  +    
Sbjct: 301 SSIMPACAHLTTLH-----LGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIF 355

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
             M +   VS W++++     H +   A   FK +
Sbjct: 356 DKMELYDMVS-WTAMIMGYALHGHAYDAISLFKRM 389


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 186/573 (32%), Positives = 307/573 (53%), Gaps = 81/573 (14%)

Query: 88  DLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC 147
           +LG A  + R  DE  +K  +++    +I+G                  L K G L +  
Sbjct: 93  ELGLAGDVRRAFDEIPVK--DAVSWTMVISG------------------LAKMGMLSDAR 132

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            L  + P RDVISW ++I+ Y+     +E +     M +EG++PD+VT++ ++SA ++L+
Sbjct: 133 LLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLK 192

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL---LGRYEIDEVDVVLW 264
           DLE+G +LHL ++E  M +S +L+  L+DMY KCG  G A+++   +GR    +     W
Sbjct: 193 DLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQS----W 248

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKY--------- 311
             ++ GY K    D AR LFD+M  R++I++  MI+G ++    ++A   +         
Sbjct: 249 NAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLR 308

Query: 312 ----------KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
                      +CAS+GAL  G  +H  I+   +  D                +  A  +
Sbjct: 309 VDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIV 368

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  + +++V+ WT++IA  A  G  +  ++ F +M   G +P+ V++IA+L+ACSH  L+
Sbjct: 369 FQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLL 428

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           +EG  +  +   +YNI P+++HYGCM+DLLGR+G L+E+ + + +MP+ P+  IW+S+L 
Sbjct: 429 NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILS 488

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           ACR H+ + LA+ A +HL + +P  D  +V L NI   + + +D S+IRM + +  +KK 
Sbjct: 489 ACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKT 548

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------- 570
            GYS +   G VHKF   D  +P   EI  ML EI   L+  G                 
Sbjct: 549 AGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPITSQVTVDVDEEEK 608

Query: 571 QETSLQHRERLAVAFGLISTSEKTTIRIVNNLR 603
           ++T L H E+LA+AFGL+S +    + I+ NLR
Sbjct: 609 EQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLR 641



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 185/409 (45%), Gaps = 15/409 (3%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            L +  G   +  +  + + + DVISWN+++S Y   G  +E +  L +M   G  P   +
Sbjct: 878  LYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRS 937

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISG-SLLNYLVDMYFKCGKIGEAQKLLGRY 254
             VSL++   K  D ++G  +H  + +     S   +   L+DMY KC     +  +    
Sbjct: 938  FVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFN-- 995

Query: 255  EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            EI  + +    +L++  +  N  D A  +   M+   +    +  S  +   +     S 
Sbjct: 996  EIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSL 1055

Query: 315  ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS----------EKNVYLWTSVIAA 364
             S   L H   V +  + +     ++  AY    ++S          + NV  +T++I+A
Sbjct: 1056 TSCQML-HSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISA 1114

Query: 365  YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
             A  G   +A++LF +M  +G KPD VTF+  ++ C   G+ +EG   +        + P
Sbjct: 1115 CARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDP 1174

Query: 425  KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
              +H+ CMV+LL R G ++E+   +   P+      WSSLL++C+ H    L + A   L
Sbjct: 1175 DERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANML 1234

Query: 485  TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
             +    +    + ++N +   G  +   RI+ ++ ++   K+ G+SLIE
Sbjct: 1235 IDVGRKDPATTLQVSNFFNDIGDRETALRIK-EMTNVKEVKKSGHSLIE 1282



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 118/303 (38%), Gaps = 76/303 (25%)

Query: 180 LLSKMGAEGVSPDEVTMVSLI--SARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVD 236
           L  +M    V PD  T   L   S+ ++ R L +   LH     + +  +   + N L+ 
Sbjct: 31  LFRRMRRAAVRPDGFTFHFLFKCSSSSRPRAL-LCTMLHAACLRTMLPSAAPFVANSLIH 89

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           MY + G  G+ ++     EI   D V WT ++SG  K     +AR L  +   R++ISWT
Sbjct: 90  MYTELGLAGDVRRAFD--EIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWT 147

Query: 297 LMISGMLNQDAE------FK-----------------YKSCASIGALYHGIWVHVYIKKN 333
            +I+     D        FK                   +C+ +  L  G  +H+ +K+ 
Sbjct: 148 SLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEK 207

Query: 334 QISID-----------------------------------------------NIELAYDL 346
            +S+                                                ++++A  L
Sbjct: 208 GMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSL 267

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F ++  +++  + S+I  Y  +G  ++A+ LF+ M     + D  T ++LLSAC+  G +
Sbjct: 268 FDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGAL 327

Query: 407 DEG 409
            +G
Sbjct: 328 PQG 330


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 198/687 (28%), Positives = 338/687 (49%), Gaps = 101/687 (14%)

Query: 23  GLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF 82
           GL+P   +      VC             S+    ++IH     + L  D  +   +F  
Sbjct: 111 GLIPDTHVLPNLFKVCA----------ELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHM 160

Query: 83  LVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGK 142
            +  G +G A+++  +  E ++     +  + L+ GY ++                  G 
Sbjct: 161 YMRCGRMGDARKVFDRMSEKDV-----VTCSALLCGYARK------------------GC 197

Query: 143 LKEVCQLFDKL------PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L+EV ++  ++      PN  ++SWN ++S +   G ++E + +  KM   G  PD+VT+
Sbjct: 198 LEEVVRILSEMEKSGIEPN--IVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTV 255

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            S++ +     +L MG+ +H ++ +  +     +++ ++DMY K G +    KL   +E+
Sbjct: 256 SSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEM 315

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLF----DEMVERNLISWTLMISGMLNQDAEFK-- 310
            E  V      ++G  ++   D+A  +F    ++ +E N++SWT +I+G      + +  
Sbjct: 316 METGVC--NAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEAL 373

Query: 311 ---------------------YKSCASIGALYHGIWVHVYIKKNQISID----------- 338
                                  +C +I AL HG   H +  +  +  D           
Sbjct: 374 ELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMY 433

Query: 339 ----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                I+++  +F+ +  KN+  W S++  Y+M G A++ + +F  +  T  KPD ++F 
Sbjct: 434 AKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFT 493

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
           +LLSAC   GL DEG+ + +  S  Y IKP+++HY CMV+LLGRAG L+E+ + I  +P 
Sbjct: 494 SLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPF 553

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            PD  +W +LL +CR   NV LAE A + L   +P N G +VL++NIYA  G   ++  I
Sbjct: 554 EPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSI 613

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----- 569
           R K+  +GLKK  G S I+    V+   + D  +P  ++I   ++EI   +++ G     
Sbjct: 614 RNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNL 673

Query: 570 ---LQETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
              LQ+   Q        H E+LAV FGL++T + T ++++ NLRICGDCH+ +K  S  
Sbjct: 674 DFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSY 733

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
             REI IRD  RFH F+ G CSC D+W
Sbjct: 734 AGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 164/417 (39%), Gaps = 83/417 (19%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +   +P+  V S++++I   T   ++ + +G+ S+M + G+ PD   + +L     +L  
Sbjct: 72  ILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSA 131

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            + GK +H     S + +   +   L  MY +CG++G+A+K+  R  + E DVV  + L+
Sbjct: 132 FKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDR--MSEKDVVTCSALL 189

Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGM----LNQDAEFKYKSCASIG-- 318
            GY +    +E  R+  EM    +E N++SW  ++SG      +++A   ++    +G  
Sbjct: 190 CGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFC 249

Query: 319 -----------------ALYHGIWVHVYIKKNQISIDNIELA---------------YDL 346
                             L  G  +H Y+ K  +  D   ++                 L
Sbjct: 250 PDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKL 309

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF---------------------------- 378
           F E       +  + I   +  G   KA+++F                            
Sbjct: 310 FDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKD 369

Query: 379 -------LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG- 430
                   EM+  G KP++VT  ++L AC +   +  G        RV+ +     H G 
Sbjct: 370 IEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDD--VHVGS 427

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
            ++D+  + G ++ S      MP   ++  W+SL+     H   K     F+ L  T
Sbjct: 428 ALIDMYAKCGRIKMSQIVFNMMPT-KNLVCWNSLMNGYSMHGKAKEVMSIFESLMRT 483


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 289/555 (52%), Gaps = 53/555 (9%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
            ++  +L+N   + G L    ++FD++P+R + +WN MI+         EGL L  +M  
Sbjct: 25  FMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHG 84

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G SPDE T+ S+ S    LR + +G+ +H +  +  +++   + + L  MY + GK+ +
Sbjct: 85  LGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQD 144

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGM 302
            + ++    +   ++V W TL+ G  ++   +    L+  M       N I++  ++S  
Sbjct: 145 GEIVIRSMPVR--NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLS-- 200

Query: 303 LNQDAEFKYKSCASIGALYHGIWVH---VYIKKNQISIDNIEL------------AYDLF 347
                     SC+ +     G  +H   + I  + +      L            A   F
Sbjct: 201 ----------SCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF 250

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLV 406
           SE  +++  +W+S+I+AY   G   +AI LF  M E+T  + ++V F+ LL ACSH GL 
Sbjct: 251 SEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLK 310

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           D+G +        Y  KP ++HY C+VDLLGRAG L+++   I SMPI PD  IW +LL 
Sbjct: 311 DKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLS 370

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           AC  H+N ++A+  FK + E DP +   +VLLAN++A A R  D+S +R  +RD  +KK+
Sbjct: 371 ACNIHKNAEMAQKVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKE 430

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS------------ 574
            G S  E  G VH+F  GD     S+EIY  L E+ + ++ +G +  +            
Sbjct: 431 AGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEK 490

Query: 575 ----LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
               +QH E+LAVAF L+   E   IRI+ NLR+C DCH   K  S + NREI +RD  R
Sbjct: 491 ESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSR 550

Query: 631 FHRFQGGQCSCRDYW 645
           FH F  G+CSC DYW
Sbjct: 551 FHHFINGKCSCGDYW 565



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 118/287 (41%), Gaps = 62/287 (21%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           ++IH + I   L  D  +++ +    +  G L   + +IR      +  WN++I     N
Sbjct: 111 QQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQN 170

Query: 118 GYPQEVFAIYLYLVTR------------TVL----------------------------- 136
           G P+ V  +YLY + +            TVL                             
Sbjct: 171 GCPETV--LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVA 228

Query: 137 --------LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
                    +KCG L +  + F +  + D + W++MIS Y   G   E + L + M  + 
Sbjct: 229 VVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQT 288

Query: 189 -VSPDEVTMVSLISA--RTKLRDLEMGKNLHLF---LEESTMKISGSLLNYLVDMYFKCG 242
            +  +EV  ++L+ A   + L+D    K L LF   +E+   K        +VD+  + G
Sbjct: 289 EMEVNEVAFLNLLYACSHSGLKD----KGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAG 344

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
            + +A+ ++    I + D V+W TL+S        + A+++F E++E
Sbjct: 345 CLDQAEAIIKSMPI-KPDPVIWKTLLSACNIHKNAEMAQKVFKEILE 390


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/538 (34%), Positives = 293/538 (54%), Gaps = 42/538 (7%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           NK G  ++  +LFD +P++D++SWN++IS + S  ++       +      V P+EVT++
Sbjct: 85  NKLGYAEDALKLFDDMPHKDLVSWNSLISGF-SRCLHMSLTAFYTMKFEMSVKPNEVTIL 143

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSL----LNYLVDMYFKCGKIGEAQKLLGR 253
           S+ISA +    L+ GK +H F     +K+ G+L     N L++MY K G +  A +L   
Sbjct: 144 SMISACSGA--LDAGKYIHGF----GIKVGGTLEVKVANSLINMYGKSGDLTSACRLF-- 195

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEF 309
             I + + V W ++++  V +    E    F++M    +E++  +   ++   L+     
Sbjct: 196 EAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGK 255

Query: 310 KYKS------CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA 363
             +S      C   GA    I +   +      +  +  +Y +F+E+   +   WT+++A
Sbjct: 256 LAESIHGLMFCTGFGA---KITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLA 312

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            YA  G  ++AI LF  M   G +PD VTF  LLSACSH GLV+EG  + +  S VY I+
Sbjct: 313 GYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIE 372

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P++ HY CMVDLLGR G L ++   I +MP+ P+  +W +LL ACR H N++L +   +H
Sbjct: 373 PRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEH 432

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L   +PL+   +++L+N+Y+ +    D +++R  L++ GLK+  GYS IE G   H F  
Sbjct: 433 LINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFV 492

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGLQ---ETSLQ-------------HRERLAVAFGL 587
           GD  +P +E+IY  L E+   +++ G     E  LQ             H E+LA+AFGL
Sbjct: 493 GDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGL 552

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + + E   + I  NLRICGDCHS  K+ S +  R I+IRD  RFH F  G CSC DYW
Sbjct: 553 LVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 120/286 (41%), Gaps = 47/286 (16%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM-----LNQDAEFKYKSC 314
           D  +   LV+ Y K    ++A +LFD+M  ++L+SW  +ISG      ++  A +  K  
Sbjct: 73  DGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFE 132

Query: 315 ASI---------------GALYHGIWVH-----------VYIKKNQISI----DNIELAY 344
            S+               GAL  G ++H           V +  + I++     ++  A 
Sbjct: 133 MSVKPNEVTILSMISACSGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSAC 192

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF  I + N   W S+IAA    G A++ ID F +M   G + D+ T +ALL AC H G
Sbjct: 193 RLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLG 252

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
            V +  + +           K+     ++D   + G L  S    T +     V+ W+++
Sbjct: 253 -VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVA-WTAM 310

Query: 465 LRACRCH----QNVKLAEHAFK------HLTETDPLNDGAHVLLAN 500
           L     H    + +KL E          H+T T  L+  +H  L N
Sbjct: 311 LAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVN 356


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/530 (33%), Positives = 287/530 (54%), Gaps = 26/530 (4%)

Query: 138  NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
             +C +L++   +F+++ + DV+SW  M+S       ++E   L  +M  EGV PD+ T+ 
Sbjct: 583  GRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLA 642

Query: 198  SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-I 256
            + +        L +GK +H  + E  ++   ++ N L++MY  CG   EA   L  +E +
Sbjct: 643  TTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREA---LSFFETM 699

Query: 257  DEVDVVLWTTLVSGYVKSNERDEARRLFDEM------VERNLISWTLMISG--MLNQDAE 308
               D+V W  + + Y ++    EA  LF +M       ++   S TL +SG   L  D +
Sbjct: 700  KARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGK 759

Query: 309  FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
              + + A+   L   + V   + K       ++ A  LF    +  V L  ++I A A  
Sbjct: 760  L-FHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQH 818

Query: 369  GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
            G +++A+ +F +M++ G +PD  T ++++SAC H G+V+EG          + I P ++H
Sbjct: 819  GFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEH 878

Query: 429  YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
            Y C VDLLGRAG LE +   I  MP   +  +W+SLL  C+   + +L E   + + E D
Sbjct: 879  YACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELD 938

Query: 489  PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
            P N  AHV+L+NIY   G+  D    R K+ D  +K   G S  E G  VH+F +GD  +
Sbjct: 939  PHNSAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSH 998

Query: 549  PHSEEIYLMLNEIEMTLQQQG------------LQETSLQ-HRERLAVAFGLISTSEKTT 595
            P ++EIY++L+++E+ +++ G            L+E +L  H ER+A+AFGLI+T  +TT
Sbjct: 999  PKTDEIYVVLDKLELLMRRAGYEADKGLDVEDELKEKALGYHSERIAIAFGLIATPPETT 1058

Query: 596  IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            ++IV NLR+CGDCH+  K  S V  REI++RD+ RFH F  G CSC+D W
Sbjct: 1059 LKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 174/404 (43%), Gaps = 54/404 (13%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMV 197
           +CG L+E   +F K+  R+V+SW  +IS     G +     L   M  E   +P+  T+V
Sbjct: 72  RCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLV 131

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLL----NYLVDMYFKCGKIGEAQKLLGR 253
           ++++A    RDL +G+++H  + E  ++ + +      N +++MY KCG + +A  +   
Sbjct: 132 AMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVF-- 189

Query: 254 YEIDEVDVVLWTTLVSGYVKSNE-RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
             I E DVV WT +   Y +      +A R+F EM+ + L    +     L         
Sbjct: 190 LAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALG-------- 241

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEIS---EKN 354
           +C S   L  G W+H  + +  +  D +               E AY +F  ++   E +
Sbjct: 242 ACTS---LRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELD 298

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           +  W ++I+A   AG    A+ +F  +   G +P+ VT I +L+A     L   G DF  
Sbjct: 299 LVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNA-----LAASGVDF-- 351

Query: 415 KKSRVYNIKPKMQHY-------GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
             +R ++ +     Y         ++ +  + G    +      +    DV  W+++L A
Sbjct: 352 GAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGA 411

Query: 468 CRCHQNVKLAEHAFKH--LTETDPLNDGAHVLLANIYAKAGRLD 509
               ++     + F H  L   DP N  + + + N  + +  LD
Sbjct: 412 SEDRKSFGKVVNTFHHMLLAGIDP-NKVSFIAILNACSNSEALD 454



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 171/433 (39%), Gaps = 62/433 (14%)

Query: 28  MRISRK--FANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF 85
           +RI R+     + P  +  I    +C+S+ +   +HS L   +L  DP  S  +      
Sbjct: 218 LRIFREMLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEASLGFDPLASNALINMYGK 277

Query: 86  TGDLGYAQQIIR---QGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTR 133
            GD   A  + +      E ++  WN++I   +  G   +  AI+  L         VT 
Sbjct: 278 CGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTL 337

Query: 134 TVLLN---------------------------------------KCGKLKEVCQLFDKLP 154
             +LN                                       KCG       +F ++ 
Sbjct: 338 ITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIR 397

Query: 155 NR-DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
            + DVISWNTM+        + + +     M   G+ P++V+ +++++A +    L+ G+
Sbjct: 398 WKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGR 457

Query: 214 NLH-LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
            +H L L      +  S+   LV MY KCG I EA+ +     +    +V W  ++  Y 
Sbjct: 458 KIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYA 517

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGML-----NQDAEFKYKSCASIGALYHGIWVH 327
           +++   EA     EM++  ++   L  + +L     +Q+A+         G  Y    + 
Sbjct: 518 QNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESG--YRSACLE 575

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
             +         +E A  +F+E+   +V  WT++++A A     ++  +LF  M+  G  
Sbjct: 576 TALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVI 635

Query: 388 PDQVTFIALLSAC 400
           PD+ T    L  C
Sbjct: 636 PDKFTLATTLDTC 648



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 163/369 (44%), Gaps = 33/369 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNR---DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
           +  KCG  +    +F  + +R   D++SWN MIS     G + + + +  ++  EG+ P+
Sbjct: 274 MYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPN 333

Query: 193 EVTMVSLISA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
            VT++++++A      D    +  H  + ES       + N ++ MY KCG    A  + 
Sbjct: 334 SVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVF 393

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDA 307
            R    + DV+ W T++          +    F  M    ++ N +S+  +++   N +A
Sbjct: 394 RRIRW-KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEA 452

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSE--ISEKNVYLWTSV 361
               +   S+       +V   +    +S+     +I  A  +F E  +  +++  W  +
Sbjct: 453 LDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVM 512

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           + AYA    +++A    +EM + G  PD ++F ++LS+C           + S++++V  
Sbjct: 513 LGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC-----------YCSQEAQVLR 561

Query: 422 IKPKMQHY--GC----MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
           +      Y   C    ++ + GR   LE++ +    M    DV  W++++ A   +++ K
Sbjct: 562 MCILESGYRSACLETALISMHGRCRELEQARSVFNEMD-HGDVVSWTAMVSATAENRDFK 620

Query: 476 LAEHAFKHL 484
              + F+ +
Sbjct: 621 EVHNLFRRM 629



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 5/161 (3%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +     LLN    CG  +E    F+ +  RD++SWN M + Y   G+ +E + L  +M  
Sbjct: 673 IAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQL 732

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           EGV PD++T  + ++       +  GK  H    ES +    S+   LV +Y KCGK+ E
Sbjct: 733 EGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDE 792

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           A  L  R   D   VVL   ++    +    +EA ++F +M
Sbjct: 793 AMSLF-RGACDWT-VVLLNAIIGALAQHGFSEEAVKMFWKM 831



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 25/223 (11%)

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            +L+ +     DL  GK+ H  +  + ++    L N L++MY +CG + EA  +  + E 
Sbjct: 29  TALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME- 87

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDA-------- 307
            E +VV WT L+S   +      A  LF  M +E +    +  +  MLN  A        
Sbjct: 88  -ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG 146

Query: 308 --------EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359
                   E   +  ++   L     +++Y K       ++E A  +F  I EK+V  WT
Sbjct: 147 RSIHAMIWELGLERASTTATLVGNAMINMYAK-----CGSLEDAIAVFLAIPEKDVVSWT 201

Query: 360 SVIAAYAMAGH-AQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           ++  AYA        A+ +F EM      P+ +TFI  L AC+
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/544 (33%), Positives = 293/544 (53%), Gaps = 44/544 (8%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDE 193
            L++    +    Q+F+++   ++ +WNTMI  +         + L S+M  A  + PD 
Sbjct: 77  ALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDT 136

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T   L  A  KL D+ +G+ +H  +  +       + N LV MY      G A+     
Sbjct: 137 HTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMY---SVFGFAESAYQV 193

Query: 254 YEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
           +EI    D V W ++++G+  +   +EA  L+ EM    +      +  +L+        
Sbjct: 194 FEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLS-------- 245

Query: 313 SCASIGALYHGIWVHVYIKK-----NQISID----------NIELAYDLFSEISEKNVYL 357
           +C  +GAL  G  VH+Y+ K     NQ + +          N   A  +F E+ E++V  
Sbjct: 246 ACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVS 305

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           WTS+I   A+ G   +A+ LF E+E  G KP ++TF+ +L ACSH G++DEG+++  +  
Sbjct: 306 WTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMK 365

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             Y I P+++H+GCMVDLL RAG + ++ ++I +MP+PP+  IW +LL AC  H +++L 
Sbjct: 366 EEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELG 425

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E A   +   +  + G  VLL+N+YA   R  D+  +R  +   G+KK  GYSL+E    
Sbjct: 426 EVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNR 485

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQHR-ERL 581
           V++F  GD  +P SEE Y ML +I   L+ +G                +ET+L H  E++
Sbjct: 486 VYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKV 545

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AF L++T   T IRI+ NLR+C DCH  +K+ S+V+ REI++RD  RFH F+ G CSC
Sbjct: 546 AIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSC 605

Query: 642 RDYW 645
           +DYW
Sbjct: 606 KDYW 609


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 208/684 (30%), Positives = 329/684 (48%), Gaps = 100/684 (14%)

Query: 47  VERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V R+C  + +  R   +H H+I      D  +   +    V  GD+  A+ +  +    +
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLY---------LVTRTVLLNKC-------------- 140
              WN++I     N    E   ++           L+T T +++ C              
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 141 ------------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
                                   G   E   +F K+  +D++SW  MIS Y   G+  +
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK 380

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            +   + M  EGV PDE+T+ S++SA   L  L+ G  LH F + + +     + N L+D
Sbjct: 381 AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLID 440

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLI 293
           MY KC  I +A ++  R  I   +V+ WT+++ G   +    EA   F +M+   + N +
Sbjct: 441 MYSKCRCIDKALEVFHR--IPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSV 498

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-------------- 339
           +   ++S            +CA IGAL  G  +H +  +  +  D               
Sbjct: 499 TLVSVLS------------ACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCG 546

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +E A++ F+   EK+V  W  ++  YA  G    A++LF +M E+   PD++TF +LL 
Sbjct: 547 RMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACS  G+V +G ++       ++I P ++HY  +VDLLGRAG LE++  FI  MPI PD 
Sbjct: 606 ACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDP 665

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
           +IW +LL ACR +QNV+L E A +H+ E D  + G ++LL N+YA +G+ D+++R+R  +
Sbjct: 666 AIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIM 725

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ------- 571
           R+  L    G S +E  G VH F +GD F+P  +EI  +L      ++  GL        
Sbjct: 726 RENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRR 785

Query: 572 --------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
                   E    H ERLA+AFGLI+T   T I +  NL +C +CH+ +K  S+V  R I
Sbjct: 786 DDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGI 845

Query: 624 VIRDNGRFHRFQGGQCSCRD--YW 645
            +RD  +FH F+ G CSC D  YW
Sbjct: 846 SVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 33/288 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L E   +F K+  RD+ SWN ++  Y   G + E L L  +M   G+ PD  T   ++
Sbjct: 143 GDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVL 202

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
                L DL  G+ +HL +     +    ++N L+ MY KCG I  A+ +  R  +   D
Sbjct: 203 RTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDR--MPRRD 260

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + W  ++SGY +++   E  RLF  M    V+ +L++ T +IS            +C +
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVIS------------ACEA 308

Query: 317 IGALYHGIWVHVYIKKN----QISIDN--IEL---------AYDLFSEISEKNVYLWTSV 361
           +G    G  VH Y+ K     ++S++N  I++         A  +FS++  K++  WT++
Sbjct: 309 LGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAM 368

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           I+ Y   G  +KA++ +  ME  G  PD++T  ++LSAC+  GL+D+G
Sbjct: 369 ISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG 416


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/565 (32%), Positives = 299/565 (52%), Gaps = 60/565 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  ++   ++FD L  RDV+SW ++ SCY   G  R+G+ +  +MG  GV P+ +T+ S
Sbjct: 211 KCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSS 270

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +L+DL+ GK +H F     M ++  + + LV +Y KC  + EA+ +     +  
Sbjct: 271 ILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDL--MPH 328

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLN---------- 304
            DVV W  +++ Y K+ E ++   LF +M    V  +  +W  +I G +           
Sbjct: 329 RDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEM 388

Query: 305 ----QDAEFK---------YKSCASIGALYHGIWVHVYIKKNQISID------------- 338
               Q   FK           +C+    L  G  +H Y+ ++    D             
Sbjct: 389 FRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAK 448

Query: 339 --NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
             ++ L+ ++F  +  K+V  W ++I A AM G+ ++A+ LF +M  +  +P+ VTF  +
Sbjct: 449 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 508

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           LS CSH  LV+EG    +   R + ++P   HY C+VD+  RAG L E+  FI  MP+ P
Sbjct: 509 LSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEP 568

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
             S W +LL ACR ++NV+LA+ + K L E +P N G +V L NI   A    + S++R+
Sbjct: 569 TASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRI 628

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----- 571
            +++ G+ K  G S ++ G  VH F  GD  N  S++IY  L+E+   ++  G +     
Sbjct: 629 LMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDY 688

Query: 572 -----------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                      E+   H E+LAVAFG+++ + ++TIR+  NLRICGDCH+ +K  S+V  
Sbjct: 689 VLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVG 748

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
             IV+RD+ RFH F+ G CSC+D W
Sbjct: 749 VIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 160/380 (42%), Gaps = 49/380 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G      QLFD +P  D  + +T+IS  T+ G+  E + + S +   G+ PD    ++  
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A     D    K +H       +     + N L+  Y KC  +  A+++     +   D
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVR--D 229

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-YKSCASIG- 318
           VV WT+L S YVK     +   +F EM    +    + +S +L   AE K  KS   I  
Sbjct: 230 VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHG 289

Query: 319 -ALYHGIWVHVYIKKNQISID----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            A+ HG+ V++++    +S+     ++  A  +F  +  ++V  W  V+ AY      +K
Sbjct: 290 FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEK 349

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
              LFL+M   G + D+ T+ A++  C   G  +E  +             KMQ  G   
Sbjct: 350 GFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFR----------KMQKMGFK- 398

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE----HAFKHLTETDP 489
                                P +++I SS+L AC   +N+++ +    + F+H    D 
Sbjct: 399 ---------------------PNEITI-SSILPACSFSENLRMGKEIHCYVFRHWKVGDL 436

Query: 490 LNDGAHVLLANIYAKAGRLD 509
            +  A   L  +YAK G L+
Sbjct: 437 TSTTA---LLYMYAKCGDLN 453



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 123/304 (40%), Gaps = 71/304 (23%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV------ 189
           L  KC  ++E   +FD +P+RDV+SWN +++ Y     Y +G  L  KM  +GV      
Sbjct: 309 LYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEAT 368

Query: 190 -----------------------------SPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
                                         P+E+T+ S++ A +   +L MGK +H ++ 
Sbjct: 369 WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVF 428

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
                   +    L+ MY KCG +  ++ +     +   DVV W T++          EA
Sbjct: 429 RHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDM--MRRKDVVAWNTMIIANAMHGNGKEA 486

Query: 281 RRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
             LFD+M    V+ N +++T ++SG            C+    +  G+ +      N + 
Sbjct: 487 LFLFDKMLLSRVQPNSVTFTGVLSG------------CSHSRLVEEGVQIF-----NSMG 529

Query: 337 IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
            D+          + E +   ++ V+  Y+ AG   +A      M     +P    + AL
Sbjct: 530 RDH----------LVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMP---MEPTASAWGAL 576

Query: 397 LSAC 400
           L+AC
Sbjct: 577 LAAC 580



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           +++ +   A  LF  I + +    +++I+A    G + +AI ++  ++E G KPD   F+
Sbjct: 109 LNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFL 168

Query: 395 ALLSACSHGG 404
           A   AC+  G
Sbjct: 169 AAAKACAVSG 178


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 197/628 (31%), Positives = 313/628 (49%), Gaps = 82/628 (13%)

Query: 71  RDPQIS----TQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAI 126
           RDP  S    T +   L   G +  A+ +  Q  EP +  WN+     +I GY Q     
Sbjct: 315 RDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNA-----MITGYMQNEM-- 367

Query: 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                           + E   LF+++P R+ ISW  MI+ Y   G   + L  L  +  
Sbjct: 368 ----------------VDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHR 411

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           +G+ P   ++ S   A + +  LE GK +H    ++  + +  + N L+ +Y K   IG 
Sbjct: 412 KGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGS 471

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
            +++  R  +   D V + + +S  V++N  DEAR +F+ M   +++SWT +IS     D
Sbjct: 472 VRQIFDRMTVK--DTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQAD 529

Query: 307 ----AEFKYKS------------------------CASIGALYHGIWVHVYIKKNQISID 338
               A   ++S                           +G   H I + + +    +  +
Sbjct: 530 QGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVAN 589

Query: 339 NIELAY---------DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
            +   Y          +F  + E++++ W ++I  YA  G  ++AI ++  M   G  P+
Sbjct: 590 ALVSMYFKCSSADSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPN 649

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
           +VTF+ LL ACSH GLVDEG+ F    S  Y + P ++HY CMVDLLGRAG ++ + +FI
Sbjct: 650 EVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFI 709

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
             MPI PD  IWS+LL AC+ H+NV++   A + L   +P N G +V+L+NIY+  G  D
Sbjct: 710 YDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWD 769

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           +++++R  +++ G+ K  G S ++    +H F +GD  +   + IY  L E+   L+  G
Sbjct: 770 EVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATG 829

Query: 570 L---------------QETS-LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
                           +E+S L H E+LAVA+GL+ T +   I+I+ NLRICGDCH+F+K
Sbjct: 830 YVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIK 889

Query: 614 VTSQVYNREIVIRDNGRFHRFQGGQCSC 641
             S V  REI +RD  RFH F+ G CSC
Sbjct: 890 FVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 164/369 (44%), Gaps = 61/369 (16%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L + G+L E  ++FD +P RD+I+WN+MI  Y + GM   G  L   +    +    + +
Sbjct: 43  LGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTI-L 101

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYE 255
           +S  +   ++RD        +F     M +  ++  N +V  Y + G I  A+KL     
Sbjct: 102 LSGYARAGRVRDAR-----RVF---DGMGVRNTVAWNAMVTCYVQNGDITLARKLFD--A 151

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG--MLNQDAE----F 309
           +   DV  W T+++GY  S   +EAR LF+ M ERN +SWT+MISG  ++ Q       F
Sbjct: 152 MPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMF 211

Query: 310 KYKSC-----------ASIGALYH----GIW--VHVYIKKNQI----------------S 336
           +   C           + + A+ H    GI   +HV + K                    
Sbjct: 212 RTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKD 271

Query: 337 IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
           ++ ++ A   F  ++ +N Y W+++IAA + AG    A  ++ + +   + P + +   +
Sbjct: 272 VNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVY-QRDPLKSVPSRTS---M 327

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L+  +  G +D+      +       +P +  +  M+    +   ++E+ +    MP   
Sbjct: 328 LTGLARYGRIDDAKILFDQIH-----EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRN 382

Query: 457 DVSIWSSLL 465
            +S W+ ++
Sbjct: 383 TIS-WAGMI 390



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 121/592 (20%), Positives = 234/592 (39%), Gaps = 119/592 (20%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTR------TVLLNKCGK--LKEVCQLFDKLPNRDV 158
           WN+++   + NG       ++  + +R      T+L   C    ++E   LF+++P R+ 
Sbjct: 129 WNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNG 188

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           +SW  MIS Y  +  +     +   M  EG++P++  +VS++SA   L    + +++H+ 
Sbjct: 189 VSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVL 248

Query: 219 LEESTMK----ISGSLLN-YLVDM--------YF-------------------KCGKIGE 246
           + ++  +    +  ++LN Y  D+        +F                   + G+I +
Sbjct: 249 VHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDD 308

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A  +  R  +  V     T++++G  +    D+A+ LFD++ E N++SW  MI+G +  +
Sbjct: 309 AFAVYQRDPLKSVPSR--TSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNE 366

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
                                            ++ A DLF+ +  +N   W  +IA YA
Sbjct: 367 M--------------------------------VDEAEDLFNRMPFRNTISWAGMIAGYA 394

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDF--- 412
             G +++A+     +   G  P   +  +   ACS           H   V  G  F   
Sbjct: 395 RNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSY 454

Query: 413 -------LSKKSR----VYNIKPKMQ-----HYGCMVDLLGRAGHLEESANFITSMPIPP 456
                  L  K R    V  I  +M       Y   +  L +    +E+ +   +MP  P
Sbjct: 455 VCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP-SP 513

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
           DV  W++++ AC        A   F+ +     L +    +L  +   +G L    ++  
Sbjct: 514 DVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPP--ILTILLGLSGNL-GAPQLGQ 570

Query: 517 KLRDMGLKKQLGYSLIEQGGFVH---KFTSGD---IFNPHSEEIYLMLNEIEMTLQQQGL 570
           ++  + +K  +   L+     V    K +S D   +F+   E      N I     Q GL
Sbjct: 571 QIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLKVFDSMEERDIFTWNTIITGYAQHGL 630

Query: 571 QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICG---DCHSFMKVTSQVY 619
              +++  + L V+ G++  +E T + +++     G   + H F K  S  Y
Sbjct: 631 GREAIRMYQ-LMVSAGVLP-NEVTFVGLLHACSHSGLVDEGHQFFKSMSSDY 680


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 206/680 (30%), Positives = 330/680 (48%), Gaps = 98/680 (14%)

Query: 47  VERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V R+C  +    R   IH H+I      D  +   +    V  GD+  A+ +  +    +
Sbjct: 213 VLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRD 272

Query: 104 IKIWNSIIENQLINGYPQE---VFAIYLY------LVTRTVLLNKC-------------- 140
              WN++I     NG   E   +F + +       L+T T ++  C              
Sbjct: 273 RISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHG 332

Query: 141 ------------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
                                   G ++E   +F +   RD++SW  MIS Y +  M ++
Sbjct: 333 YVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQK 392

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L     M AEG+ PDE+T+  ++SA + L +L+MG NLH   ++  +     + N L+D
Sbjct: 393 ALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLID 452

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER---NLI 293
           MY KC  I +A ++   +   E ++V WT+++ G   +N   EA   F EM+ R   N +
Sbjct: 453 MYAKCKCIDKALEIF--HSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKPNSV 510

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-------------- 339
           +   ++S            +CA IGAL  G  +H +  +  +S D               
Sbjct: 511 TLVCVLS------------ACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCG 558

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +E A+  F  + +  V  W  ++  YA  G    A +LF  M E+   P++VTFI++L 
Sbjct: 559 RMEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILC 617

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACS  G+V EG ++ +     Y+I P ++HY C+VDLLGR+G LEE+  FI  MP+ PD 
Sbjct: 618 ACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDP 677

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
           ++W +LL +CR H +V+L E A +++ + D  + G ++LL+N+YA  G+ D ++ +R  +
Sbjct: 678 AVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMM 737

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ--ETS-- 574
           R  GL    G S +E  G VH F S D F+P  +EI  +L      +++ G++  E+S  
Sbjct: 738 RQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESSHM 797

Query: 575 -----------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
                        H ERLA+ FGLI++     I +  NL +C  CH+ +K  S+   REI
Sbjct: 798 DIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREI 857

Query: 624 VIRDNGRFHRFQGGQCSCRD 643
            +RD  +FH F+GG CSC D
Sbjct: 858 SVRDAEQFHHFKGGICSCTD 877



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 33/280 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L +   +F ++  R++ SWN ++  Y   G++ E L L  +M   GV PD  T   ++
Sbjct: 155 GNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVL 214

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
                + +L  G+ +H+ +     +    ++N L+ MY KCG +  A+ +  +  +   D
Sbjct: 215 RTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDK--MPNRD 272

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + W  ++SGY ++    E  RLF  M    V+ +L++ T +I+            +C  
Sbjct: 273 RISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVIT------------ACEL 320

Query: 317 IGALYHGIWVHVYIKKNQI----SIDN-----------IELAYDLFSEISEKNVYLWTSV 361
           +G    G  +H Y+ + +     SI N           IE A  +FS    +++  WT++
Sbjct: 321 LGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAM 380

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           I+ Y      QKA++ +  ME  G  PD++T   +LSACS
Sbjct: 381 ISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACS 420



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           +   N+  A+ +F  + ++N++ W  ++  YA AG   +A+DL+  M   G KPD  TF 
Sbjct: 152 VRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFP 211

Query: 395 ALLSACSHGGL 405
            +L  C  GG+
Sbjct: 212 CVLRTC--GGM 220



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 73/176 (41%), Gaps = 38/176 (21%)

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-----SGMLNQDAEFKY------ 311
           L   L+S +V+     +A  +F  M +RNL SW +++     +G+ ++  +  +      
Sbjct: 143 LGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG 202

Query: 312 ------------KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAY 344
                       ++C  +  L  G  +HV++ +     D               ++  A 
Sbjct: 203 VKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTAR 262

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
            +F ++  ++   W ++I+ Y   G   + + LF  M +    PD +T  ++++AC
Sbjct: 263 LVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITAC 318


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 179/539 (33%), Positives = 292/539 (54%), Gaps = 42/539 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L    ++F  + ++ V SWN +I  +      R  L    +M   G+ PD  T+ S
Sbjct: 442 KCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCS 501

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+SA +KL+ L +GK +H F+  + ++    +   ++ +Y  CG++   Q L    E  +
Sbjct: 502 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME--D 559

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             +V W T+++GY+++   D A  +F     R ++ + + + G+        + +C+ + 
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVF-----RQMVLYGIQLCGISMMPV---FGACSLLP 611

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           +L  G   H Y  K+ +  D               +I  +  +F+ + EK+   W ++I 
Sbjct: 612 SLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIM 671

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y + G A++AI LF EM+ TG  PD +TF+ +L+AC+H GL+ EG  +L +    + +K
Sbjct: 672 GYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLK 731

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFIT-SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           P ++HY C++D+LGRAG L+++   +   M    DV IW SLL +CR HQN+++ E    
Sbjct: 732 PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAA 791

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L E +P     +VLL+N+YA  G+ +D+ ++R ++ +M L+K  G S IE    V  F 
Sbjct: 792 KLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFV 851

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFG 586
            G+ F    EEI  + + +EM + + G +  ++                 H E+LA+ +G
Sbjct: 852 VGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYG 911

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LI TSE TTIR+  NLRIC DCH+  K+ S+V  REIV+RDN RFH F+ G CSC DYW
Sbjct: 912 LIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/500 (20%), Positives = 193/500 (38%), Gaps = 88/500 (17%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H  ++ T L+ D  +   +  F    G +  A Q+     E  +  WNS+I     NG+
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268

Query: 120 PQEVF--------------------------------------------AIYLYLVTRTV 135
            +E F                                            A+ L L    V
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELV 328

Query: 136 LLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GA 186
           L N       KCG +     +F    N++V+SWNTM+  +++ G       +L +M  G 
Sbjct: 329 LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGG 388

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           E V  DEVT+++ +        L   K LH +  +     +  + N  V  Y KCG +  
Sbjct: 389 EDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSY 448

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           AQ++   + I    V  W  L+ G+ +SN+   +     +M    L+  +  +  +L+  
Sbjct: 449 AQRVF--HGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS-- 504

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                 +C+ + +L  G  VH +I +N +  D                +     LF  + 
Sbjct: 505 ------ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME 558

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +K++  W +VI  Y   G   +A+ +F +M   G +   ++ + +  ACS    +     
Sbjct: 559 DKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLR---- 614

Query: 412 FLSKKSRVYNIKPKMQ---HYGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
            L +++  Y +K  ++      C ++D+  + G + +S+     +      S W++++  
Sbjct: 615 -LGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMG 672

Query: 468 CRCHQNVKLAEHAFKHLTET 487
              H   K A   F+ +  T
Sbjct: 673 YGIHGLAKEAIKLFEEMQRT 692



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/289 (20%), Positives = 117/289 (40%), Gaps = 53/289 (18%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
           K + + P S  V  +  +CS +      + +H  +I   L RD  +   V    +  G+L
Sbjct: 488 KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGEL 547

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLL------------ 137
              Q +    ++  +  WN++I   L NG+P     ++  +V   + L            
Sbjct: 548 CTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 607

Query: 138 -----------------------------------NKCGKLKEVCQLFDKLPNRDVISWN 162
                                               K G + +  ++F+ L  +   SWN
Sbjct: 608 SLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWN 667

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
            MI  Y   G+ +E + L  +M   G +PD++T + +++A      +  G   +L   +S
Sbjct: 668 AMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLR-YLDQMKS 726

Query: 223 TMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
           +  +  +L +Y  ++DM  + G++ +A +++     +E DV +W +L+S
Sbjct: 727 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 775



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 137/317 (43%), Gaps = 34/317 (10%)

Query: 130 LVTRTVLLNK-CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAE 187
           L TR + +   CG   +   +FD L ++++  WN +IS Y+   +Y E L    +M    
Sbjct: 122 LCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTT 181

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
            + PD  T   +I A   + D+ +G  +H  + ++ +     + N LV  Y   G + +A
Sbjct: 182 DLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDA 241

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-------ISWTLMIS 300
            +L     + E ++V W +++  +  +   +E+  L  EM+E N        ++  + + 
Sbjct: 242 LQLFDI--MPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 299

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------IELAYDLFSE 349
            +  ++ E        +G   HG  V + + K ++ ++N           I  A  +F  
Sbjct: 300 PVCAREREI------GLGKGVHGWAVKLRLDK-ELVLNNALMDMYSKCGCITNAQMIFKM 352

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG--TKPDQVTFIALLSACSHGGL-- 405
            + KNV  W +++  ++  G      D+  +M   G   K D+VT +  +  C H     
Sbjct: 353 NNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLP 412

Query: 406 -VDEGYDFLSKKSRVYN 421
            + E + +  K+  VYN
Sbjct: 413 SLKELHCYSLKQEFVYN 429



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 43/230 (18%)

Query: 199 LISARTKLRDLEMGKNLHLFLEEST-MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           L+ A  K +D+EMG+ +H  +  ST ++    L   ++ MY  CG   ++     R+  D
Sbjct: 90  LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDS-----RFVFD 144

Query: 258 EV---DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY--- 311
            +   ++  W  ++S Y ++   DE    F EM     IS T ++         F Y   
Sbjct: 145 ALRSKNLFQWNAVISSYSRNELYDEVLETFIEM-----ISTTDLLPD------HFTYPCV 193

Query: 312 -KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNV 355
            K+CA +  +  G+ VH  + K  +  D                +  A  LF  + E+N+
Sbjct: 194 IKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNL 253

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLE-MEETGTK---PDQVTFIALLSACS 401
             W S+I  ++  G ++++  L  E MEE G     PD  T + +L  C+
Sbjct: 254 VSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/594 (32%), Positives = 292/594 (49%), Gaps = 90/594 (15%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKIW 107
           +C+S+ + + IH+ +I+T L+ D    +++  F   +   +L Y  +I+       +  W
Sbjct: 63  ACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNVFSW 122

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTV-------------------------------- 135
           N  I   + +  P     +Y  ++ +                                  
Sbjct: 123 NMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVI 182

Query: 136 ----------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                           +L  CG+L    +LFD+   RD++SWN++I+ Y   G+  E   
Sbjct: 183 QLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFD 242

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  KMG   V PDEVTM+ ++SA  +L +L +G+ LH  +EE  + ++  L N L+DMY 
Sbjct: 243 LYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYI 302

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
           KC  I EA K+L    + +  VV WTT+V GY K    + A RLF+EM E++++ W  +I
Sbjct: 303 KCKNI-EAAKILFE-NMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALI 360

Query: 300 SGMLNQD------AEFK-----------------YKSCASIGALYHGIWVHVYIKKNQIS 336
            G +         A F                    +C+ +GAL  GIW+H Y+ K+ ++
Sbjct: 361 GGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLT 420

Query: 337 ID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
           ++               NI+ A  +F E+  +N   WT++I   A+ G    AI  F EM
Sbjct: 421 MNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEM 480

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
              G  PD++TFI +LSAC HGGLVD+G D+  + +  Y I PK++HY C+VDLLGRAG 
Sbjct: 481 ISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGF 540

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           LEE+   I SMP  PD  +W +L    R H NV + E A   L E DP + G +VLLAN+
Sbjct: 541 LEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANM 600

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           Y  A   +   ++R  + + G++K  G S IE  G V+ F   D  +P SE+IY
Sbjct: 601 YGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIY 654


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 173/528 (32%), Positives = 287/528 (54%), Gaps = 49/528 (9%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
            F+K+P +D+ SWNT+IS +   G  ++   L S M  +    + V+  ++IS   +  D
Sbjct: 158 FFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMISGYVEHGD 213

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           LE  + L+  +   ++ +  ++L      Y K GK+  A+++  R  +   ++V W +++
Sbjct: 214 LEAAEELYKNVGMKSVVVETAMLT----GYMKFGKVELAERIFQRMAVK--NLVTWNSMI 267

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           +GYV++   ++  ++F  M+E  +    L +S +L          C+++ AL  G  +H 
Sbjct: 268 AGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL--------LGCSNLSALPLGRQMHQ 319

Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            + K+ +S D               +++ A+ LF E+  K+V  W ++I+ YA  G  +K
Sbjct: 320 LVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRK 379

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A+ LF +M     KPD +TF+A++ AC+H G VD G  +     + + I+ K  HY C++
Sbjct: 380 ALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVI 439

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLLGRAG L+E+ + I  MP  P  +I+ +LL ACR H+N+ LAE A ++L   DP +  
Sbjct: 440 DLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSAT 499

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            +V LANIYA   + D ++++R  +++  + K  GYS IE     H+F S D  +P    
Sbjct: 500 GYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTS 559

Query: 554 IYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIR 597
           I+  LNE++  ++  G                 ++  L H E+LA+AFGL+ T+  T IR
Sbjct: 560 IHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIR 619

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  NLR+CGDCH  +K  S +  REI++RD  RFH F+ G CSC DYW
Sbjct: 620 VFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 30/244 (12%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-----YKSC 314
           DVV     ++ +V++ + + AR +F++M  R  ++W  M+SG      + K     +   
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
               ++ + I +  Y++        +E A   F+++  K++  W ++I+ +A  G  QKA
Sbjct: 132 PEPDSVSYNIMLVCYLRSY-----GVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKA 186

Query: 375 IDLFLEMEETGTKPDQVTFIALLSA-CSHGGL--VDEGYDFLSKKSRVYNIKPKMQHYGC 431
            DLF  M E     + V++ A++S    HG L   +E Y  +  KS V            
Sbjct: 187 FDLFSVMPEK----NGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVET--------A 234

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA----CRCHQNVKLAEHAFKHLTET 487
           M+    + G +E +      M +  ++  W+S++      CR    +K+ +   +     
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAV-KNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRP 293

Query: 488 DPLN 491
           +PL+
Sbjct: 294 NPLS 297


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 190/652 (29%), Positives = 325/652 (49%), Gaps = 71/652 (10%)

Query: 44   VIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD 100
            ++ V ++C    +++  ++IH ++    L  D  +   +       G L  A+++    +
Sbjct: 778  IVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSME 837

Query: 101  EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVIS 160
                  WNS+I +    G+  + ++++  L +                  D  P  D+++
Sbjct: 838  NRNTSSWNSMISSYAALGFLNDAWSLFYELESS-----------------DMKP--DIVT 878

Query: 161  WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
            WN ++S +   G   E L +L +M  EG  P+  +M S++ A ++L  L MGK  H ++ 
Sbjct: 879  WNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVL 938

Query: 221  ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
             +       +   L+DMY K   +  AQ +     +   ++  W +LVSGY      ++A
Sbjct: 939  RNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFD--NMKNRNIFAWNSLVSGYSFKGMFEDA 996

Query: 281  RRLFDEM----VERNLISWTLMISGMLNQDAEFK------------YKSCASIGALYHGI 324
             RL ++M    ++ +L++W  MISG        K             ++CAS+  L  G 
Sbjct: 997  LRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGK 1056

Query: 325  WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
             +H    +N    D               +++ A+ +F  I  K +  W  +I  +A+ G
Sbjct: 1057 EIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFG 1116

Query: 370  HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
              ++AI +F EM++ G  PD +TF ALLSAC + GL+ EG+ +       Y I P+++HY
Sbjct: 1117 LGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHY 1176

Query: 430  GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
             CMVDLLGRAG+L+E+ + I +MP+ PD +IW +LL +CR H+N+  AE A K+L + +P
Sbjct: 1177 CCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEP 1236

Query: 490  LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
             N   ++L+ N+Y+   R +DM  +R  +   G++ +  +S I+    VH F+S +  +P
Sbjct: 1237 NNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHP 1296

Query: 550  HSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEK 593
             + +IY  L ++   +++ G                 Q+  L H E+LA+ +GLI     
Sbjct: 1297 DAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAG 1356

Query: 594  TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              IR++ N RIC DCHS  K  S V  RE+ +RD  RFH F+ G+CSC D+W
Sbjct: 1357 EPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 49/332 (14%)

Query: 124  FAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
            F + +YL  R  L+N   +C  L++  Q+F ++PN + + WN  I         ++G+ L
Sbjct: 705  FDLDVYL--RCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVEL 762

Query: 181  LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
              KM    +  +  T+V ++ A  K+  L   K +H ++    +    SL N L+ MY K
Sbjct: 763  FRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSK 822

Query: 241  CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWT 296
             GK+  A+++    E    +   W +++S Y      ++A  LF E+    ++ ++++W 
Sbjct: 823  NGKLELARRVFDSME--NRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 880

Query: 297  LMISG---------MLN-----QDAEFKYKSC---------ASIGALYHGIWVHVYIKKN 333
             ++SG         +LN     Q   FK  S          + +G L  G   H Y+ +N
Sbjct: 881  CLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRN 940

Query: 334  QISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
                D               ++  A  +F  +  +N++ W S+++ Y+  G  + A+ L 
Sbjct: 941  GFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLL 1000

Query: 379  LEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
             +ME+ G KPD VT+  ++S  +  G   + +
Sbjct: 1001 NQMEKEGIKPDLVTWNGMISGYAMWGCARKAF 1032


>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Brachypodium distachyon]
          Length = 648

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 299/557 (53%), Gaps = 67/557 (12%)

Query: 138 NKCGKLKEVCQLFDKLPNRDV------ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           ++ G L    QL D++P           ++N++IS      +      L  +M   GV  
Sbjct: 110 SRLGLLPCAHQLLDEMPLASTPPATLCTAFNSLISGCALHALPAACFALFRRMRVAGVRF 169

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D VT+++L+ A        +   LH     + +    S+ N L+ +Y + G    A+++ 
Sbjct: 170 DAVTLLTLVPAAPP----SVVPQLHALAARAGLAAETSVANCLISVYARRGA-ALARQVF 224

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-------VERNLISWTLMISGMLN 304
                   D+V W  ++S + ++    +A  L+  M       VE + ++   ++S    
Sbjct: 225 DEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLS---- 280

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIK------KNQISIDN-----------IELAYDLF 347
                   SCA +GA   G+ V  Y++      +  + + N           +  A  LF
Sbjct: 281 --------SCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARCGCLPQAQQLF 332

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
           +E+  K++  WT++I  Y M GH + AI+LF  M   G +PD V  + LLSACSH G+ D
Sbjct: 333 NEMPRKSIVSWTALITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMVGLLSACSHAGMYD 392

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG  + S     Y ++P ++HY CMVDLLGRAG L+E+   I+SMP+P D ++W +LL A
Sbjct: 393 EGRKYFSAMESAYQLRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPADGAVWGALLGA 452

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           C+ H+NV++ E AF+H+ E +P N G +VL+ANIY   G+LD + R+R  +R+ GLKK+ 
Sbjct: 453 CKIHKNVEIGEEAFEHVIEVEPTNVGYYVLMANIYTDTGQLDCVVRVRAMMRERGLKKEP 512

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ-----GLQ----------E 572
           G S +E  G VH F + D  +P ++ IY ++ ++E  ++++     G+Q          +
Sbjct: 513 GCSYVEHKGRVHLFMADDHSHPQAKRIYELVLKLEQMVKEKTDGTVGIQGGRMIEGHSEK 572

Query: 573 TSLQ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDN 628
           T++     H E+LAVAFG+++T   + I ++ NLR+CG+CHSF+K  S + NR  ++RD 
Sbjct: 573 TAVPLIGFHSEKLAVAFGMLNTV-GSEIAVIKNLRVCGNCHSFLKTVSAIANRVFLVRDA 631

Query: 629 GRFHRFQGGQCSCRDYW 645
            RFHRF+ G CSC+DYW
Sbjct: 632 SRFHRFEDGACSCKDYW 648


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 186/538 (34%), Positives = 292/538 (54%), Gaps = 42/538 (7%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           NK G  ++  +LFD +P++D++SWN++IS + S  ++       +      V P+EVT++
Sbjct: 85  NKLGYAEDALKLFDDMPHKDLVSWNSLISGF-SRCLHMSLTAFYTMKFEMSVKPNEVTIL 143

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSL----LNYLVDMYFKCGKIGEAQKLLGR 253
           S+ISA      L+ GK +H F     +K+ G+L     N L++MY K G +  A +L   
Sbjct: 144 SMISACNGA--LDAGKYIHGF----GIKVGGTLEVKVANSLINMYGKSGDLTSACRLF-- 195

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEF 309
             I + + V W ++++  V +    E    F++M    +E++  +   ++   L+     
Sbjct: 196 EAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGK 255

Query: 310 KYKS------CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA 363
             +S      C   GA    I +   +      +  +  +Y +F+E+   +   WT+++A
Sbjct: 256 LAESIHGLMFCTGFGA---KITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLA 312

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            YA  G  ++AI LF  M   G +PD VTF  LLSACSH GLV+EG  + +  S VY I+
Sbjct: 313 GYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIE 372

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P++ HY CMVDLLGR G L ++   I +MP+ P+  +W +LL ACR H N++L +   +H
Sbjct: 373 PRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEH 432

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L   +PL+   +++L+N+Y+ +    D +++R  L++ GLK+  GYS IE G   H F  
Sbjct: 433 LINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFV 492

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGLQ---ETSLQ-------------HRERLAVAFGL 587
           GD  +P +E+IY  L E+   +++ G     E  LQ             H E+LA+AFGL
Sbjct: 493 GDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGL 552

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + + E   + I  NLRICGDCHS  K+ S +  R I+IRD  RFH F  G CSC DYW
Sbjct: 553 LVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 120/286 (41%), Gaps = 47/286 (16%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM-----LNQDAEFKYKSC 314
           D  +   LV+ Y K    ++A +LFD+M  ++L+SW  +ISG      ++  A +  K  
Sbjct: 73  DGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFE 132

Query: 315 ASI---------------GALYHGIWVH-----------VYIKKNQISI----DNIELAY 344
            S+               GAL  G ++H           V +  + I++     ++  A 
Sbjct: 133 MSVKPNEVTILSMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSAC 192

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            LF  I + N   W S+IAA    G A++ ID F +M   G + D+ T +ALL AC H G
Sbjct: 193 RLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLG 252

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
            V +  + +           K+     ++D   + G L  S    T +     V+ W+++
Sbjct: 253 -VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVA-WTAM 310

Query: 465 LRACRCH----QNVKLAEHAFK------HLTETDPLNDGAHVLLAN 500
           L     H    + +KL E          H+T T  L+  +H  L N
Sbjct: 311 LAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVN 356


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 185/589 (31%), Positives = 305/589 (51%), Gaps = 94/589 (15%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            +FD +P R+VI +N MI  Y +  +Y + L +   M + G SPD  T   ++ A +   
Sbjct: 88  NVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSD 147

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           +L +G  LH  + +  + ++  + N L+ +Y KCG + EA+ +L   E+   DVV W ++
Sbjct: 148 NLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD--EMQSKDVVSWNSM 205

Query: 268 VSGYVKSNERDEA-------------------------------------RRLFDEMVER 290
           V+GY ++ + D+A                                       +F  + ++
Sbjct: 206 VAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKK 265

Query: 291 NLISWTLMISGMLNQDAEFK-----------------------YKSCASIGALYHGIWVH 327
           +L+SW +MIS  +      K                        ++C  + AL  G  +H
Sbjct: 266 SLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIH 325

Query: 328 VYIKKNQIS----IDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            Y+++ ++     ++N           +E A  +F  +  ++V  WTS+I+AY M G   
Sbjct: 326 EYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGY 385

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
            A+ LF EM+ +G  PD + F+A+LSACSH GL++EG  +  + +  Y I P ++H+ C+
Sbjct: 386 NAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACL 445

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGR+G ++E+ N I  MP+ P+  +W +LL +CR + N+ +   A   L +  P   
Sbjct: 446 VDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEES 505

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G +VLL+NIYAKAGR  +++ IR  ++   ++K  G S +E    VH F +GD ++P S+
Sbjct: 506 GYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSK 565

Query: 553 EIYLMLNEIEMTLQQQGL---QETSLQ-------------HRERLAVAFGLISTSEKTTI 596
           EIY  L+ +   +++ G     +++L              H E+LA+ F +++T E + I
Sbjct: 566 EIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE-SPI 624

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           RI  NLR+CGDCH   K+ S++  REIVIRD  RFH F+ G CSC DYW
Sbjct: 625 RITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 159/391 (40%), Gaps = 56/391 (14%)

Query: 179 GLLSKMGAEGVSPDEVTMVSLISART--KLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L+S +    VSP    +V  +  +   +  D++  KN+H  +   +   + SL   L+ 
Sbjct: 16  ALVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMR 75

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
            Y   G+ G A+ +     I E +V+ +  ++  Y+ ++  D+A  +F +MV        
Sbjct: 76  AYAARGEPGLARNVFD--VIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMV-------- 125

Query: 297 LMISGMLNQD-----AEFKYKSCAS---IGALYHGIWVHVYIKKNQISIDNIELAYD--- 345
              SG  + D        K  SC+    IG   HG    V +  N    + +   Y    
Sbjct: 126 ---SGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCG 182

Query: 346 -------LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
                  +  E+  K+V  W S++A YA       A+D+  EM+    KPD  T  +LL 
Sbjct: 183 CLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLP 242

Query: 399 ACSHGG-----LVDEGYDFLSKKSRV-----YNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           A ++        V+E +  L KKS V      ++  K    G  VDL  + G  E   + 
Sbjct: 243 AVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDA 302

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           IT   +       S+LL   R H+ V+  +     L E           L ++YA+ G L
Sbjct: 303 ITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENS---------LIDMYARCGCL 353

Query: 509 DDMSRI--RMKLRDMGLKKQL--GYSLIEQG 535
           +D  R+  RMK RD+     L   Y +  QG
Sbjct: 354 EDAKRVFDRMKFRDVASWTSLISAYGMTGQG 384


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/696 (27%), Positives = 331/696 (47%), Gaps = 97/696 (13%)

Query: 34  FANVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           ++ + P       V  +C+   +ID   ++H+ ++     +D   +  + +  V  G + 
Sbjct: 195 WSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVD 254

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR---------TVLLNKCG 141
            A  I  +  + ++  WN++I   ++NG+      + L + +          + +L  C 
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 314

Query: 142 K--------------------------------------LKEVCQLFDKLPNRDVISWNT 163
                                                  L +  ++FD + +RD+I WN 
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNA 374

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           +IS  +  G + E   +   +  EG+  +  T+ +++ +   L      + +H   E+  
Sbjct: 375 LISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIG 434

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                 ++N L+D Y+KC  + +A ++    E    D++  T++++   + +  + A +L
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDAIRVF--EECSSGDIIAVTSMITALSQCDHGEGAIKL 492

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI-------- 335
           F EM+ + L     ++S +LN        +CAS+ A   G  VH ++ K Q         
Sbjct: 493 FMEMLRKGLEPDPFVLSSLLN--------ACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 544

Query: 336 ----------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
                     SI++ ELA   FS + E+ V  W+++I   A  GH ++A++LF  M + G
Sbjct: 545 ALVYTYAKCGSIEDAELA---FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEG 601

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
             P+ +T  ++L AC+H GLVDE   + +    ++ I    +HY CM+DLLGRAG L+++
Sbjct: 602 INPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDA 661

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
              + SMP   + S+W +LL A R H++ +L + A + L   +P   G HVLLAN YA +
Sbjct: 662 MELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASS 721

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
           G  ++++++R  ++D  +KK+   S +E    VH F  GD  +P ++EIY  L+E+   +
Sbjct: 722 GMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLM 781

Query: 566 QQQGL-------------QETSL---QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
            + G               E  L    H ERLAVAF L+ST     IR+  NLRIC DCH
Sbjct: 782 SKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCH 841

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              K  S + +REI+IRD  RFH F+ G CSC DYW
Sbjct: 842 MAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 167/362 (46%), Gaps = 48/362 (13%)

Query: 133 RTVLLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           R  L++   K +  C   ++FD++P+   +SW+++++ Y++ G+ R  +     M AEGV
Sbjct: 40  RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV 99

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
             +E  +  ++     + D ++G  +H     +       + N LV MY   G + +A++
Sbjct: 100 CCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARR 156

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           +       E + V W  L+S YVK+++  +A ++F EMV      W    SG+  Q  EF
Sbjct: 157 VFDEAG-SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMV------W----SGI--QPTEF 203

Query: 310 KY----KSCASIGALYHGIWVHVYIKKNQ---------------ISIDNIELAYDLFSEI 350
            +     +C     +  G  VH  + +                 + +  +++A  +F ++
Sbjct: 204 GFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKM 263

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            + +V  W ++I+   + GH  +AI+L L+M+ +G  P+     ++L AC+  G  D   
Sbjct: 264 PDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFD--- 320

Query: 411 DFLSKKSRVYNIKPKM---QHYGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
             L ++   + IK       + G  +VD+  +   L+++      M    D+ +W++L+ 
Sbjct: 321 --LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALIS 377

Query: 467 AC 468
            C
Sbjct: 378 GC 379


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/530 (33%), Positives = 285/530 (53%), Gaps = 26/530 (4%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L+    +F+K+  ++ ++W  ++  YT      + L L +KM  EGV  DE     
Sbjct: 158 KCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSI 217

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A   L +L  G+ +H  + +  ++   S+   LVD Y KC  +  A K      I E
Sbjct: 218 VLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEW--ISE 275

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSC 314
            + V W+ L++GY +  E +EA + F+ +    V+ N  ++T +     +  A+F   + 
Sbjct: 276 PNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQA-CSALADFNSGAQ 334

Query: 315 ASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           A   A+   +  + + +   I++      ++ A  +F  I + +   WT++IA YA  G+
Sbjct: 335 AHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGN 394

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
           A +A+ LF  M++ G +P+ VTFIA+L+ACSH GLV EG  +L   S  Y +   + HY 
Sbjct: 395 APEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYD 454

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           CMVD+  RAG L+E+   I SMP  PD   W  LL  C  ++N+++ E A ++L + DP 
Sbjct: 455 CMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPE 514

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
           +   ++L+ N+YA  G+  + + +R  + +  L+K+L  S I   G VH+F  GD  +P 
Sbjct: 515 DTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQ 574

Query: 551 SEEIYLMLNEIEMTL--QQQGL-------------QETSLQHRERLAVAFGLISTSEKTT 595
           +EEIY  L  +  ++  ++ GL             +E  L H ERLA+AFGLIST     
Sbjct: 575 TEEIYSKLEALNDSVIKEETGLLTEEDVSNSLPERKEQLLVHSERLALAFGLISTPSSAP 634

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + +  NLR C DCH F K  S +  REIV+RD+ RFH F+ G+CSC DYW
Sbjct: 635 VVVFKNLRACKDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 164/367 (44%), Gaps = 35/367 (9%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L +  ++FD++  R+++SWNT+IS Y   G++ +G  + S M      P+  T + 
Sbjct: 57  KCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIG 116

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + +      LE+GK +H     S +  + S+   + +MY KCG +  A+ +  +  + E
Sbjct: 117 FLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEK--MSE 174

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            + V WT ++ GY ++  + +A  LF +MV   +     + S +L        K+CA + 
Sbjct: 175 KNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVL--------KACAGLE 226

Query: 319 ALYHGIWVHVYIKK----NQISI-----------DNIELAYDLFSEISEKNVYLWTSVIA 363
            L  G  +H +I K    +++S+            N+E A   F  ISE N   W+++I 
Sbjct: 227 ELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALIT 286

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y   G  ++A+  F  +       +  T+ ++  ACS     + G      ++    IK
Sbjct: 287 GYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSG-----AQAHADAIK 341

Query: 424 PKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
             +  Y      M+ +  R G L+ +     S+   PD   W++++       N   A  
Sbjct: 342 SSLVAYQHGESAMITMYSRCGRLDYATRVFESID-DPDAVAWTAIIAGYAYQGNAPEALK 400

Query: 480 AFKHLTE 486
            F+ + +
Sbjct: 401 LFRRMQD 407



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 33/300 (11%)

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M   G+S    +   L  A  K++ L  G+  H  ++ +       L N ++ MY KCG 
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE----RNLISWTLMI 299
           + +A+K+    E+ E ++V W T++S Y ++   D+   +F  M+E     N  ++   +
Sbjct: 61  LADARKVFD--EMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFL 118

Query: 300 SGMLNQDA---EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVY 356
             +LN        +  S A    L     V+  I    +    +E A  +F ++SEKN  
Sbjct: 119 RSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAV 178

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGL 405
            WT ++  Y  A     A+ LF +M   G + D+  F  +L AC+           HG +
Sbjct: 179 AWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHI 238

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           V  G +     S V    P       +VD   +  +LE +      +  P DVS WS+L+
Sbjct: 239 VKLGLE-----SEVSVGTP-------LVDFYVKCSNLESATKAFEWISEPNDVS-WSALI 285



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 115/277 (41%), Gaps = 54/277 (19%)

Query: 46  MVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP 102
           +V ++C+ ++E     +IH H++   L  +  + T + +F V   +L  A +      EP
Sbjct: 217 IVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEP 276

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN------------------------ 138
               W+++I      G  +E    +  L TR+V +N                        
Sbjct: 277 NDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAH 336

Query: 139 -----------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
                                  +CG+L    ++F+ + + D ++W  +I+ Y   G   
Sbjct: 337 ADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAP 396

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-- 233
           E L L  +M   GV P+ VT +++++A +    +  G+  +L    S   ++ ++ +Y  
Sbjct: 397 EALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQ-YLESMSSNYGVATTIDHYDC 455

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +VD+Y + G + EA +L+ R      D + W  L+ G
Sbjct: 456 MVDIYSRAGFLQEALELI-RSMPFSPDAMSWKCLLGG 491



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 32/226 (14%)

Query: 49  RSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           ++CS++ +F    + H+  I ++L+      + +       G L YA ++    D+P+  
Sbjct: 321 QACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAV 380

Query: 106 IWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKLKEVCQLFDKL 153
            W +II      G   E   ++  +         VT   +L  C   G + E  Q  + +
Sbjct: 381 AWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESM 440

Query: 154 PNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
            +   ++     ++ M+  Y+  G  +E L L+  M     SPD ++   L+      R+
Sbjct: 441 SSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSM---PFSPDAMSWKCLLGGCWTYRN 497

Query: 209 LEMG----KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           LE+G    +NL     E T   +G +L  + ++Y   GK  EA  +
Sbjct: 498 LEIGELAAENLFQLDPEDT---AGYIL--MFNLYASFGKWKEAANV 538


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/567 (33%), Positives = 296/567 (52%), Gaps = 55/567 (9%)

Query: 118 GYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           G+ Q+ F     L T+ + + ++   +    ++FDK   R +  WN +       G   +
Sbjct: 99  GFDQDPF-----LATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGND 153

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISA----RTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
            L L  +M   GVS D  T   L+ A       +  L+ GK +H  +          ++ 
Sbjct: 154 VLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMT 213

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---E 289
            L+DMY + G +  A  +    E+   +VV W+ +++ Y K+ +  EA  LF EM+    
Sbjct: 214 TLMDMYARFGCVSYASAVFD--EMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTH 271

Query: 290 RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS------------- 336
            ++ +   M+S +         ++CA+  AL  G  +H YI +  +              
Sbjct: 272 DSVPNSVTMVSVL---------QACAAFAALEQGKLIHAYILRRGLDSILPVISALITMY 322

Query: 337 --IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                +E    +F  + +K+V LW S+I++Y + G+ +KAI +F EM + G  P  ++FI
Sbjct: 323 ARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFI 382

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
           ++L ACSH GLV+EG        + + I+P ++HY CMVDLLGRA  L+E+A  I  + I
Sbjct: 383 SVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRI 442

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            P   +W SLL ACR H +V+LAE A K L + +P N G +VLLA+IYA+A   D++ R+
Sbjct: 443 EPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRV 502

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS 574
           +  L    L+K  G S IE    ++ FTS D FNP  E+++ +L  +   ++Q+G    +
Sbjct: 503 KKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQT 562

Query: 575 ----------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                           L H E+LAVAFGLI+TS+  TIRI  NLR+C DCHS  K  S+ 
Sbjct: 563 KLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKF 622

Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
            +REI++RD  RFH F+ G CSC DYW
Sbjct: 623 ADREIMVRDLNRFHHFKDGVCSCGDYW 649


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 197/633 (31%), Positives = 325/633 (51%), Gaps = 64/633 (10%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V+MV  +        ++H  ++           + + +     G +G A+++    DE E
Sbjct: 151 VVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVF---DEME 207

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
            K  N ++ N +I G                  L +C  + E   LF+ +  RD I+W T
Sbjct: 208 GK--NVVMCNTMITG------------------LLRCKMVAEARALFEAIEERDSITWTT 247

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           M++  T  G+  E L +  +M AEGV  D+ T  S+++A   L  LE GK +H ++  + 
Sbjct: 248 MVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTC 307

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
            + +  + + LVDMY KC  +  A+ +  R      +++ WT ++ GY ++   +EA R+
Sbjct: 308 YEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWK--NIISWTAMIVGYGQNGCGEEAVRV 365

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH----VYIKKNQISIDN 339
           F EM    +      +  +++        SCA++ +L  G   H    V   +  +++ N
Sbjct: 366 FSEMQRDGIKPDDFTLGSVIS--------SCANLASLEEGAQFHCLALVSGLRPYVTVSN 417

Query: 340 -----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                      IE A+ LF E+S  +   WT+++  YA  G A++ IDLF +M   G KP
Sbjct: 418 ALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKP 477

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D VTFI +LSACS  GLVD+G  +     + ++I P   HY CM+DL  R+G L+++  F
Sbjct: 478 DGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEF 537

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I  MP  PD   W++LL ACR   ++++ + A ++L + DP N  ++VLL +++A  G  
Sbjct: 538 IKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEW 597

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
           +D++++R  +RD  +KK+ G S I+    VH F++ D  +P S  IY  L  +   + ++
Sbjct: 598 NDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEE 657

Query: 569 GLQE--TSL--------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G +   +S+               H E+LA+AFGLI    +  IRIV NLR+C DCH+  
Sbjct: 658 GYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNAT 717

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K  S++  R+I++RD  RFH+F  G CSC D+W
Sbjct: 718 KFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 184/382 (48%), Gaps = 53/382 (13%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-- 184
           LVT   LL+   + G ++++ +LF  LP RD +S+N +++ ++  G +    G    +  
Sbjct: 77  LVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLR 136

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLH---LFLEESTMKISGSLLNYLVDMYFKC 241
              GV P  +TM  ++   + L D  +G+ +H   L L       +GS    LVDMY K 
Sbjct: 137 DEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGS---PLVDMYAKV 193

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           G IG+A+++    E++  +VV+  T+++G ++     EAR LF+ + ER+ I+WT M++G
Sbjct: 194 GPIGDARRVFD--EMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTG 251

Query: 302 MLNQDAEFK-----------------------YKSCASIGALYHGIWVHVYIKKN----- 333
           +     E +                         +C ++ AL  G  +H YI +      
Sbjct: 252 LTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDN 311

Query: 334 ----QISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                  +D      ++ LA  +F  +  KN+  WT++I  Y   G  ++A+ +F EM+ 
Sbjct: 312 VFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQR 371

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            G KPD  T  +++S+C++   ++EG  F    + V  ++P +     +V L G+ G +E
Sbjct: 372 DGIKPDDFTLGSVISSCANLASLEEGAQFHC-LALVSGLRPYVTVSNALVTLYGKCGSIE 430

Query: 444 ESANFITSMPIPPDVSIWSSLL 465
           ++      M     VS W++L+
Sbjct: 431 DAHRLFDEMSFHDQVS-WTALV 451


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 189/546 (34%), Positives = 307/546 (56%), Gaps = 32/546 (5%)

Query: 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           + +Y    T LL +C  ++E  +LF+ + +RD I+W TM++ +T  G+  E L +  +M 
Sbjct: 206 VVMYNTMITGLL-RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMR 264

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            +G++ D+ T  S+++A   L  LE GK +H ++  +    +  + + LVDMY KC  I 
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIK 324

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS---WTL--MIS 300
            A+ +  R      +++ WT L+ GY ++   +EA R+F EM +R+ I    +TL  +IS
Sbjct: 325 LAETVFRRMTCK--NIISWTALIVGYGQNGCSEEAVRVFSEM-QRDGIDPDDYTLGSVIS 381

Query: 301 GMLN-----QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNV 355
              N     + A+F     A +  L H I V   +        +IE A+ LF E+S  + 
Sbjct: 382 SCANLASLEEGAQFH--CLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             WT++++ YA  G A++ IDLF +M   G KPD VTFI +LSACS  G V++G  +   
Sbjct: 440 VSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHS 499

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
             + + I P   HY CM+DL  R+G L+E+  FI  MP+ PD   W +LL ACR   +++
Sbjct: 500 MQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           + + A ++L E DP N  ++VLL +++A  G+ ++++++R  +RD  +KK+ G S I+  
Sbjct: 560 IGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYK 619

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE--TSL--------------QHRE 579
             VH F++ D  +P S+ IY  L  +   + ++G +   +S+               H E
Sbjct: 620 NKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSE 679

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           +LA+AFGLI   ++  IRIV NLR+C DCH+  K  S++  R+I++RD  RFH+F  G C
Sbjct: 680 KLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVC 739

Query: 640 SCRDYW 645
           SC D+W
Sbjct: 740 SCGDFW 745



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 179/368 (48%), Gaps = 54/368 (14%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL-LSKMGAEG-VSPDEVTMVSLI 200
           L ++  LF  +  RD++S+N +I+ ++  G + + + + L+ + A+  V P  +TM +++
Sbjct: 88  LSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMV 147

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A + L D  +GK  H  +       +  + + LVDMY K   +G+A++     E+D  +
Sbjct: 148 MAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFD--EVDSKN 205

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK---------- 310
           VV++ T+++G ++    +EARRLF+ M +R+ I+WT M++G      E +          
Sbjct: 206 VVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRF 265

Query: 311 -------------YKSCASIGALYHGIWVHVYIKKNQISIDN----------------IE 341
                          +C ++ AL  G  +H YI + +   DN                I+
Sbjct: 266 QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYD-DNVFVGSALVDMYSKCRSIK 324

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           LA  +F  ++ KN+  WT++I  Y   G +++A+ +F EM+  G  PD  T  +++S+C+
Sbjct: 325 LAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCA 384

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPD 457
           +   ++EG  F         +   + HY      +V L G+ G +E++      M     
Sbjct: 385 NLASLEEGAQF-----HCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439

Query: 458 VSIWSSLL 465
           VS W++L+
Sbjct: 440 VS-WTALV 446


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/539 (33%), Positives = 292/539 (54%), Gaps = 42/539 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L    ++F  + ++ V SWN +I  +      R  L    +M   G+ PD  T+ S
Sbjct: 192 KCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCS 251

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+SA +KL+ L +GK +H F+  + ++    +   ++ +Y  CG++   Q L    E  +
Sbjct: 252 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME--D 309

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             +V W T+++GY+++   D A  +F     R ++ + + + G+        + +C+ + 
Sbjct: 310 KSLVSWNTVITGYLQNGFPDRALGVF-----RQMVLYGIQLCGISMMPV---FGACSLLP 361

Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
           +L  G   H Y  K+ +  D               +I  +  +F+ + EK+   W ++I 
Sbjct: 362 SLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIM 421

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y + G A++AI LF EM+ TG  PD +TF+ +L+AC+H GL+ EG  +L +    + +K
Sbjct: 422 GYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLK 481

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFIT-SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           P ++HY C++D+LGRAG L+++   +   M    DV IW SLL +CR HQN+++ E    
Sbjct: 482 PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAA 541

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L E +P     +VLL+N+YA  G+ +D+ ++R ++ +M L+K  G S IE    V  F 
Sbjct: 542 KLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFV 601

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFG 586
            G+ F    EEI  + + +EM + + G +  ++                 H E+LA+ +G
Sbjct: 602 VGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYG 661

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           LI TSE TTIR+  NLRIC DCH+  K+ S+V  REIV+RDN RFH F+ G CSC DYW
Sbjct: 662 LIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 159/373 (42%), Gaps = 37/373 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPDE 193
           + +KCG +     +F    N++V+SWNTM+  +++ G       +L +M  G E V  DE
Sbjct: 86  MYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADE 145

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           VT+++ +        L   K LH +  +     +  + N  V  Y KCG +  AQ++   
Sbjct: 146 VTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVF-- 203

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
           + I    V  W  L+ G+ +SN+   +     +M    L+  +  +  +L+        +
Sbjct: 204 HGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS--------A 255

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           C+ + +L  G  VH +I +N +  D                +     LF  + +K++  W
Sbjct: 256 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 315

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            +VI  Y   G   +A+ +F +M   G +   ++ + +  ACS    +      L +++ 
Sbjct: 316 NTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLR-----LGREAH 370

Query: 419 VYNIKPKMQH---YGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
            Y +K  ++      C ++D+  + G + +S+     +      S W++++     H   
Sbjct: 371 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHGLA 429

Query: 475 KLAEHAFKHLTET 487
           K A   F+ +  T
Sbjct: 430 KEAIKLFEEMQRT 442



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 121/264 (45%), Gaps = 25/264 (9%)

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKM----GAEGVSPDEVTMVSLISARTKLRDLEM 211
           R+ +SWN+MI  ++  G   E   LL +M    G     PD  T+V+++    + R++ +
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           GK +H +  +  +     L N L+DMY KCG I  AQ +      +  +VV W T+V G+
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN--NNKNVVSWNTMVGGF 118

Query: 272 VKSNER----DEARRLF--------DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
               +     D  R++         DE+   N +      S +       K   C S+  
Sbjct: 119 SAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL----PSLKELHCYSLKQ 174

Query: 320 --LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
             +Y+ +  + ++  +     ++  A  +F  I  K V  W ++I  +A +   + ++D 
Sbjct: 175 EFVYNELVANAFV-ASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDA 233

Query: 378 FLEMEETGTKPDQVTFIALLSACS 401
            L+M+ +G  PD  T  +LLSACS
Sbjct: 234 HLQMKISGLLPDSFTVCSLLSACS 257



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 123/301 (40%), Gaps = 55/301 (18%)

Query: 21  RLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQIST 77
           RL L   +++  K + + P S  V  +  +CS +      + +H  +I   L RD  +  
Sbjct: 228 RLSLDAHLQM--KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYL 285

Query: 78  QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLL 137
            V    +  G+L   Q +    ++  +  WN++I   L NG+P     ++  +V   + L
Sbjct: 286 SVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQL 345

Query: 138 -----------------------------------------------NKCGKLKEVCQLF 150
                                                           K G + +  ++F
Sbjct: 346 CGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVF 405

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           + L  +   SWN MI  Y   G+ +E + L  +M   G +PD++T + +++A      + 
Sbjct: 406 NGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIH 465

Query: 211 MGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            G   +L   +S+  +  +L +Y  ++DM  + G++ +A +++     +E DV +W +L+
Sbjct: 466 EGLR-YLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLL 524

Query: 269 S 269
           S
Sbjct: 525 S 525


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 186/542 (34%), Positives = 288/542 (53%), Gaps = 50/542 (9%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           N+C K  E+  LF++  N D+++WN M++ YT      + L L + M  +G   D+ T+ 
Sbjct: 465 NRCMKEAEI--LFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLA 521

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++      L  +  GK +H +  +S   +   + + ++DMY KCG +  AQ     +  D
Sbjct: 522 TVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ-----FAFD 576

Query: 258 EV---DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            +   D V WTT++SG +++ E + A  +F +M    ++     I+ +       K  SC
Sbjct: 577 SIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLA------KASSC 630

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
             + AL  G  +H    K   + D               +I+ AY LF  I   N+  W 
Sbjct: 631 --LTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 688

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           +++   A  G  ++ + LF +M+  G KPD+VTFI +LSACSH GLV E Y  +      
Sbjct: 689 AMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           Y IKP+++HY C+ D LGRAG ++++ N I SM +    S++ +LL ACR   + +  + 
Sbjct: 749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
               L E +PL+  A+VLL+N+YA A + D+M   R  ++   +KK  G+S IE    +H
Sbjct: 809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ---------------HRERLAV 583
            F   D  N  +E IY  + ++   ++Q+G + ET                  H E+LAV
Sbjct: 869 IFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAV 928

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGL+ST   T IR++ NLR+CGDCH+ MK  ++VYNREIV+RD  RFHRF+ G CSC D
Sbjct: 929 AFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD 988

Query: 644 YW 645
           YW
Sbjct: 989 YW 990



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 165/376 (43%), Gaps = 32/376 (8%)

Query: 128 LYLVTRTVLLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
           L L     L+N   KL++      +FD +  RD+ISWN++I+     G+  E + L  ++
Sbjct: 348 LMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQL 407

Query: 185 GAEGVSPDEVTMVSLISARTKLRD-LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
              G+ PD+ TM S++ A + L + L + K +H+   +        +   L+D Y +   
Sbjct: 408 LRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRC 467

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           + EA+ L  R+     D+V W  +++GY +S++  +  +LF  M ++   S    ++ + 
Sbjct: 468 MKEAEILFERHNF---DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATV- 523

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                  +K+C  + A+  G  VH Y  K+   +D               ++  A   F 
Sbjct: 524 -------FKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFD 576

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            I   +   WT++I+     G  ++A  +F +M   G  PD+ T   L  A S    +++
Sbjct: 577 SIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQ 636

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G    +   ++ N          +VD+  + G ++++      + +  +++ W+++L   
Sbjct: 637 GRQIHANALKL-NCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGL 694

Query: 469 RCHQNVKLAEHAFKHL 484
             H   K     FK +
Sbjct: 695 AQHGEGKETLQLFKQM 710



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 189/461 (40%), Gaps = 50/461 (10%)

Query: 58  ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           E  H +     L  D  ++  +    +  G +   + +  +    ++ +WN +++  L  
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224

Query: 118 GYPQEVF--------------AIYLYLVTRTVLLNK-CGKLKEVCQLFDKLPNRDVISWN 162
           G+ +E                 I L L+ R    +   G++K      D     ++I  N
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRN 284

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
             +S Y   G Y   L   + M    V  D+VT + +++   K+  L +G+ +H    + 
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
            + +  ++ N L++MY K  K G A+ +     + E D++ W ++++G  ++    EA  
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFD--NMSERDLISWNSVIAGIAQNGLEVEAVC 402

Query: 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG-ALYHGIWVHVY-IKKNQISIDNI 340
           LF +++   L      ++ +L        K+ +S+   L     VHV+ IK N +S   +
Sbjct: 403 LFMQLLRCGLKPDQYTMTSVL--------KAASSLPEGLSLSKQVHVHAIKINNVSDSFV 454

Query: 341 ELAY-DLFS------------EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
             A  D +S            E    ++  W +++A Y  +    K + LF  M + G +
Sbjct: 455 STALIDAYSRNRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGER 514

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGCMVDLLGRAGHLE 443
            D  T   +   C     +++G     K+   Y IK      +     ++D+  + G + 
Sbjct: 515 SDDFTLATVFKTCGFLFAINQG-----KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            +     S+P+P DV+ W++++  C  +   + A H F  +
Sbjct: 570 AAQFAFDSIPVPDDVA-WTTMISGCIENGEEERAFHVFSQM 609



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 32/207 (15%)

Query: 208 DLEMGKNLH---LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           DL +GK  H   L  EE+  +    L+N L+ MY KCG +  A+++  +  + + D+V W
Sbjct: 54  DLMLGKCTHARILTFEENPERF---LINNLISMYSKCGSLTYARRVFDK--MPDRDLVSW 108

Query: 265 TTLVSGYVKSNE-----RDEARRLF----DEMVERNLISWTLMI-----SGMLNQDAEFK 310
            ++++ Y +S+E       +A  LF     ++V  + ++ + M+     SG +     F 
Sbjct: 109 NSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFH 168

Query: 311 YKSCASIG----ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
             +C  IG        G  V++Y+K  ++    +     LF E+  ++V LW  ++ AY 
Sbjct: 169 GYAC-KIGLDGDEFVAGALVNIYLKFGKVKEGKV-----LFEEMPYRDVVLWNLMLKAYL 222

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTF 393
             G  ++AIDL      +G  P+++T 
Sbjct: 223 EMGFKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 34/269 (12%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS-----MGMYREGLGLLSKMGAEGVS 190
           + +KCG L    ++FDK+P+RD++SWN++++ Y       +   ++   L   +  + V 
Sbjct: 83  MYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVY 142

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
              +T+  ++        +   ++ H +  +  +     +   LV++Y K GK+ E + L
Sbjct: 143 TSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVL 202

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
               E+   DVVLW  ++  Y++   ++EA  L          S     SG LN + E  
Sbjct: 203 FE--EMPYRDVVLWNLMLKAYLEMGFKEEAIDL----------SSAFHSSG-LNPN-EIT 248

Query: 311 YKSCASI-GALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
            +  A I G       V  +   N  S           SEI  +N  L     + Y  +G
Sbjct: 249 LRLLARISGDDSDAGQVKSFANGNDASS---------VSEIIFRNKGL-----SEYLHSG 294

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLS 398
                +  F +M E+  + DQVTFI +L+
Sbjct: 295 QYSALLKCFADMVESDVECDQVTFILMLA 323


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/696 (27%), Positives = 331/696 (47%), Gaps = 97/696 (13%)

Query: 34  FANVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           ++ + P       V  +C+   +ID   ++H+ ++     +D   +  + +  V  G + 
Sbjct: 102 WSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVD 161

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR---------TVLLNKCG 141
            A  I  +  + ++  WN++I   ++NG+      + L + +          + +L  C 
Sbjct: 162 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 221

Query: 142 K--------------------------------------LKEVCQLFDKLPNRDVISWNT 163
                                                  L +  ++FD + +RD+I WN 
Sbjct: 222 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNA 281

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           +IS  +  G + E   +   +  EG+  +  T+ +++ +   L      + +H   E+  
Sbjct: 282 LISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIG 341

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                 ++N L+D Y+KC  + +A ++    E    D++  T++++   + +  + A +L
Sbjct: 342 FIFDAHVVNGLIDSYWKCSCLSDAIRVF--EECSSGDIIAVTSMITALSQCDHGEGAIKL 399

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI-------- 335
           F EM+ + L     ++S +LN        +CAS+ A   G  VH ++ K Q         
Sbjct: 400 FMEMLRKGLEPDPFVLSSLLN--------ACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 451

Query: 336 ----------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
                     SI++ ELA   FS + E+ V  W+++I   A  GH ++A++LF  M + G
Sbjct: 452 ALVYTYAKCGSIEDAELA---FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEG 508

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
             P+ +T  ++L AC+H GLVDE   + +    ++ I    +HY CM+DLLGRAG L+++
Sbjct: 509 INPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDA 568

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
              + SMP   + S+W +LL A R H++ +L + A + L   +P   G HVLLAN YA +
Sbjct: 569 MELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASS 628

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
           G  ++++++R  ++D  +KK+   S +E    VH F  GD  +P ++EIY  L+E+   +
Sbjct: 629 GMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLM 688

Query: 566 QQQGL-------------QETSL---QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
            + G               E  L    H ERLAVAF L+ST     IR+  NLRIC DCH
Sbjct: 689 SKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCH 748

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              K  S + +REI+IRD  RFH F+ G CSC DYW
Sbjct: 749 MAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/459 (22%), Positives = 186/459 (40%), Gaps = 64/459 (13%)

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN-RDVIS 160
           P+ ++   +    +  G+  +VF     +     +    G + +  ++FD+  + R+ +S
Sbjct: 21  PDAQLGAQVHAMAMATGFGSDVFVANALVA----MYGGFGFMDDARRVFDEAGSERNAVS 76

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           WN ++S Y       + + +  +M   G+ P E     +++A T  R+++ G+ +H  + 
Sbjct: 77  WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVV 136

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
               +      N LVDMY K G++  A  +  +  + + DVV W  L+SG V +     A
Sbjct: 137 RMGYEKDVFTANALVDMYVKMGRVDIASVIFEK--MPDSDVVSWNALISGCVLNGHDHRA 194

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY-IKKNQISIDN 339
             L  +M    L+    M+S +L        K+CA  GA   G  +H + IK N  S D 
Sbjct: 195 IELLLQMKSSGLVPNVFMLSSIL--------KACAGAGAFDLGRQIHGFMIKANADSDDY 246

Query: 340 IEL--------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
           I +              A  +F  +S +++ LW ++I+  +  G   +A  +F  + + G
Sbjct: 247 IGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEG 306

Query: 386 TKPDQVTFIALLSACSH--------------------------GGLVDEGY--DFLSKKS 417
              ++ T  A+L + +                            GL+D  +    LS   
Sbjct: 307 LGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAI 366

Query: 418 RVYN--IKPKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQ 472
           RV+       +     M+  L +  H E +      M    + PD  + SSLL AC    
Sbjct: 367 RVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLS 426

Query: 473 NVKLAEHAFKHLTETDPLNDG-AHVLLANIYAKAGRLDD 510
             +  +    HL +   ++D  A   L   YAK G ++D
Sbjct: 427 AYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIED 465



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 137/308 (44%), Gaps = 45/308 (14%)

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M AEGV  +E  +  ++     + D ++G  +H     +       + N LV MY   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           + +A+++       E + V W  L+S YVK+++  +A ++F EMV      W    SG+ 
Sbjct: 58  MDDARRVFDEAG-SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMV------W----SGI- 105

Query: 304 NQDAEFKY----KSCASIGALYHGIWVHVYIKKNQ---------------ISIDNIELAY 344
            Q  EF +     +C     +  G  VH  + +                 + +  +++A 
Sbjct: 106 -QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIAS 164

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F ++ + +V  W ++I+   + GH  +AI+L L+M+ +G  P+     ++L AC+  G
Sbjct: 165 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAG 224

Query: 405 LVDEGYDFLSKKSRVYNIKPKM---QHYGC-MVDLLGRAGHLEESANFITSMPIPPDVSI 460
             D     L ++   + IK       + G  +VD+  +   L+++      M    D+ +
Sbjct: 225 AFD-----LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS-HRDLIL 278

Query: 461 WSSLLRAC 468
           W++L+  C
Sbjct: 279 WNALISGC 286


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 208/678 (30%), Positives = 331/678 (48%), Gaps = 101/678 (14%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           S++E  ++HSH+I         +S  + +    T  LG A Q+    D PE    +S+  
Sbjct: 213 SVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLF--NDIPE---RDSVTF 267

Query: 113 NQLINGYPQEVF---AIYLYLVTRTV------------------------------LLNK 139
           N L+ GY +E F   AI L+   + V                               + K
Sbjct: 268 NALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVK 327

Query: 140 CG-------------------KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           C                    ++ E  +LF ++P  D IS+N +++CY   G  +E L L
Sbjct: 328 CNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLEL 387

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYF 239
             ++   G         +L+S      +L++G+ +H      T  IS  L+ N LVDMY 
Sbjct: 388 FKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHS-QTIVTDAISEILVGNSLVDMYA 446

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
           KCG+ GEA ++     I     V WT ++S YV+    ++  +LF EM    + +     
Sbjct: 447 KCGEFGEANRIFSDLAIQSS--VPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATY 504

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYI-KKNQIS--------ID------NIELAY 344
           + ++        ++CAS+ +L  G  +H +I     IS        +D      +I+ A 
Sbjct: 505 ASIV--------RACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDAL 556

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
            +F E+  +N   W ++I+AYA  G     + LF EM  +G +PD V+ +++L ACSH G
Sbjct: 557 QMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCG 616

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           LV+EG  +    +R+Y + PK +HY   +D+L R G  +E+   +  MP  PD  +WSS+
Sbjct: 617 LVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSV 676

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGA-HVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           L +C  H+N +LA+ A   L     L D A +V ++NIYA AG  D++ +++  +R+ G+
Sbjct: 677 LNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGV 736

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ------------ 571
           KK   YS +E     H FT+ D  +P   EI   L+E+E  + ++G +            
Sbjct: 737 KKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDE 796

Query: 572 ----ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
               E+   H ER+A+AF LIST E + I ++ NLR C DCH+ +KV S++  REI +RD
Sbjct: 797 EVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRD 856

Query: 628 NGRFHRFQGGQCSCRDYW 645
           + RFH F+ G C+CRDYW
Sbjct: 857 SSRFHHFRDGFCTCRDYW 874



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 185/435 (42%), Gaps = 52/435 (11%)

Query: 132 TRTVLLN--KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           T T+++   K G L E   LFD +  R  ++W  +I  Y     +RE  GL  +MG  G+
Sbjct: 135 TNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGI 194

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFL----EESTMKISGSLLNYLVDMYFKCGKIG 245
            PD V++ +L+S  T+   +   + +H  +     +ST+ +S SLL    D Y K   +G
Sbjct: 195 DPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLL----DSYCKTRSLG 250

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE-----RNLISWTLMIS 300
            A +L    +I E D V +  L++GY K     EA  LF +M E            ++ +
Sbjct: 251 LAFQLFN--DIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTA 308

Query: 301 GMLNQDAEFKYKSCASIGALYHG-------IWVHVYIKKNQISI----DNIELAYDLFSE 349
           G+   D EF        G   HG       +W +V++    +      D +  A  LF E
Sbjct: 309 GIQLDDIEF--------GQQVHGFVVKCNFVW-NVFVANALLDFYSKHDRVVEASKLFYE 359

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + E +   +  ++  YA  G  +++++LF E++ TG       F  LLS  +    +D G
Sbjct: 360 MPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIG 419

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
               S ++ V +   ++     +VD+  + G   E+    + + I   V  W++++ +  
Sbjct: 420 RQIHS-QTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVP-WTAMISS-- 475

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            +    L E   K   E            A I A A     + R    L  + L KQL +
Sbjct: 476 -YVQKGLHEDGLKLFVEMQR---------AKIGADAATYASIVRACASLASLTLGKQL-H 524

Query: 530 SLIEQGGFVHKFTSG 544
           S I   G++    SG
Sbjct: 525 SHIIGSGYISNVFSG 539



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 122/264 (46%), Gaps = 49/264 (18%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N+LV  + + G +  A+KL    E+   ++    T++ GY+KS    EAR LFD M +R 
Sbjct: 105 NFLVKSFLQRGDLNGARKLFD--EMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRT 162

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGI------------------------WVH 327
            ++WT++I G   Q+ +F+      I    HGI                         VH
Sbjct: 163 AVTWTMLIGGYA-QNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVH 221

Query: 328 VYIKK----NQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            ++ K    + + + N           + LA+ LF++I E++   + +++  Y+  G  +
Sbjct: 222 SHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNR 281

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHY 429
           +AI+LF +M+E G +P + TF A+L+A      ++ G   + F+ K + V+N+       
Sbjct: 282 EAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVA---- 337

Query: 430 GCMVDLLGRAGHLEESANFITSMP 453
             ++D   +   + E++     MP
Sbjct: 338 NALLDFYSKHDRVVEASKLFYEMP 361


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/533 (34%), Positives = 286/533 (53%), Gaps = 47/533 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           Q+F   P++   +W+++IS +    +    L     M  +GV PD+    S   +   L 
Sbjct: 76  QIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILS 135

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L + K LH F  ++   +   + + ++DMY KCG I  A  +    E+   +VV W+ L
Sbjct: 136 SLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFD--EMPYRNVVSWSGL 193

Query: 268 VSGYVKSNERDEARRLF--------DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           + GYV+  E DE+ RLF        +E V    +S  L + G           +   +G 
Sbjct: 194 IYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGG---------STLLQMGR 244

Query: 320 LYHGIWVHV------YIKKNQISIDN----IELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
           L HG+          ++  + IS+ +    +E AYD+F E++ +N+ +W +++ A A   
Sbjct: 245 LIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHA 304

Query: 370 HAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           H  K  +LF +M+  G  K + +TF+ +L ACSH GLV++G  +  +  + Y I+P  QH
Sbjct: 305 HTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKG-KYYFELMKDYGIEPGTQH 363

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           Y  MVDLLGRAG L ++   I  MP+ P  S+W +LL  CR H N KLA +    ++E  
Sbjct: 364 YSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELG 423

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
            ++ G HV+L+N YA AGR ++ ++ R  +RD G+KK+ G S +E+G  +H F +GD  +
Sbjct: 424 SVSSGLHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSH 483

Query: 549 PHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTSE 592
             S EIY  L+E+   + + G + +TS                 H ERLA+AFG I+   
Sbjct: 484 AKSVEIYDKLDELGEEMDKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPH 543

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              IR++ NLR+CGDCH+ +K  S+   R I++RDN RFHRF+ G+C+C DYW
Sbjct: 544 GQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 147/337 (43%), Gaps = 57/337 (16%)

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIEN-QLINGYP----------QEVFAIYLYLVTRTV-L 136
           L Y + ++RQG  P+  I+ S  ++  +++  P          +  + + +++ +  + +
Sbjct: 106 LNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDM 165

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM----GAEGVSPD 192
             KCG +     +FD++P R+V+SW+ +I  Y  +G   E L L  +       EGV  +
Sbjct: 166 YAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGV--N 223

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           + T+ S++        L+MG+ +H    +++   S  + + L+ +Y KCG + EA  +  
Sbjct: 224 DFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFE 283

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-----VERNLISWTLMISGMLNQDA 307
             E+   ++ +W  ++    +    D+   LFD+M     ++ N I++  ++        
Sbjct: 284 --EVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVL-------- 333

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
                +C+  G +  G +    +K   I                E     +++++     
Sbjct: 334 ----YACSHAGLVEKGKYYFELMKDYGI----------------EPGTQHYSTMVDLLGR 373

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-HG 403
           AG    A+ L   +EE   +P +  + ALL+ C  HG
Sbjct: 374 AGKLNDAVKL---IEEMPMEPTESVWGALLTGCRLHG 407


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 197/550 (35%), Positives = 298/550 (54%), Gaps = 54/550 (9%)

Query: 138 NKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREG---LGLLSKMGAEGVSPDE 193
           +K G L+E   +F  +   RD +SWN+MI  Y   G ++EG   L L  +M  +G   D 
Sbjct: 184 SKGGLLREAVSVFYGMDGLRDEVSWNSMIVAY---GQHKEGAKALALYKEMIFKGFKIDM 240

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK---IGEAQKL 250
            T+ S+++A T L  L  G+  H  L ++    +  + + L+D Y KCG    + +++K+
Sbjct: 241 FTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKV 300

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNER-DEARRLFDEMVE----RNLISWTLMISGMLNQ 305
               EI   D+VLW T++SGY  + E  +EA + F +M       +  S+  + S   N 
Sbjct: 301 F--QEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNL 358

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN--IELAYD---------LFSEISEKN 354
                  S  S G   HG+ +   I  N+IS++N  I L Y          +F  + E N
Sbjct: 359 -------SSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELN 411

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              +  +I  YA  GH  +A+ L+  M ++G  P+ +TF+A+LSAC+H G VDEG  + +
Sbjct: 412 AVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFN 471

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
                + I+P+ +HY CM+DLLGRAG LEE+  FI +MP  P    W++LL ACR H+N+
Sbjct: 472 TMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNM 531

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
            LAE A K L    PL    +V+LAN+YA AG+ ++M+ +R  +R   ++K+ G S IE 
Sbjct: 532 ALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEV 591

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---QETSL---------------- 575
               H F + D  +P   E+   L E+   +++ G    ++ ++                
Sbjct: 592 KKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLG 651

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LAVAFGL+ST +   I +V NLRICGDCH+ +K  S V  REI++RDN RFH F+
Sbjct: 652 HHSEKLAVAFGLMSTRDGEEIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFK 711

Query: 636 GGQCSCRDYW 645
            G+CSC DYW
Sbjct: 712 DGKCSCGDYW 721



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 111/506 (21%), Positives = 199/506 (39%), Gaps = 81/506 (16%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+  + + +     +S          G L YA+      +EP +  +N I++      Y
Sbjct: 30  LHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVK-----AY 84

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
            ++                   K+    QLFD+ P  D +S+NT+IS Y         + 
Sbjct: 85  AKD------------------SKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMV 126

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  +M   G   D  T+  LI+A     DL   K LH F          S+ N  V  Y 
Sbjct: 127 LFKRMRELGFEVDGFTLSGLIAACCDRVDLI--KQLHCFAVSGGFDSYSSVNNAFVTYYS 184

Query: 240 KCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
           K G + EA  +   Y +D + D V W +++  Y +  E  +A  L+ EM+ +        
Sbjct: 185 KGGLLREAVSVF--YGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFT 242

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI-------------SIDNIELAYD 345
           ++ +LN      +      G  +HG  +     +N                 D +  +  
Sbjct: 243 LASVLNALTSLDH---LIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEK 299

Query: 346 LFSEISEKNVYLWTSVIAAYAM-AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
           +F EI   ++ LW ++I+ Y+M   H+++A+  F +M+  G +PD  +F+ + SACS+  
Sbjct: 300 VFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLS 359

Query: 405 LVDEGYDF--LSKKS---------------------------RVYNIKPKMQ--HYGCMV 433
              +G     L+ KS                           RV++  P++    + CM+
Sbjct: 360 SPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMI 419

Query: 434 DLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
               + GH  E+      M    I P+   + ++L AC     V   +  F  + ET  +
Sbjct: 420 KGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKI 479

Query: 491 NDGA--HVLLANIYAKAGRLDDMSRI 514
              A  +  + ++  +AG+L++  R 
Sbjct: 480 EPEAEHYSCMIDLLGRAGKLEEAERF 505



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 122/311 (39%), Gaps = 68/311 (21%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           RDL  GK+LH    +S +  S  L N+ V++Y KCG +  A+      E  E +V  +  
Sbjct: 22  RDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTE--EPNVFSYNV 79

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKYKSCASIGALYH 322
           +V  Y K ++   AR+LFDE  + + +S+  +ISG  +      A   +K    +G    
Sbjct: 80  IVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVD 139

Query: 323 GIWVHVYIKK--------NQISIDNIELAYDLFSEISEKNVYL----------------- 357
           G  +   I           Q+    +   +D +S ++   V                   
Sbjct: 140 GFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199

Query: 358 --------WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-------- 401
                   W S+I AY       KA+ L+ EM   G K D  T  ++L+A +        
Sbjct: 200 DGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGG 259

Query: 402 ---HGGLVDEGYDFLSKKSRVYNIKPKMQHYGC-MVDLLGRAG---HLEESANFITSMPI 454
              HG L+  G+              +  H G  ++D   + G    + +S      + +
Sbjct: 260 RQFHGKLIKAGFH-------------QNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEI-L 305

Query: 455 PPDVSIWSSLL 465
            PD+ +W++++
Sbjct: 306 SPDLVLWNTMI 316



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 6/185 (3%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G L +  ++FD++P  + +S+N MI  Y   G   E L L  +M   G++P+ +T
Sbjct: 390 LYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNIT 449

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            V+++SA      ++ G+     ++E T KI     +Y  ++D+  + GK+ EA++ +  
Sbjct: 450 FVAILSACAHCGKVDEGQKYFNTMKE-TFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDA 508

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE-MVERNLISWTLMISGMLNQDAEFKYK 312
                  V  W  L+    K      A R   E MV + L +   ++   +  DA  K++
Sbjct: 509 MPYKPGSVA-WAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAG-KWE 566

Query: 313 SCASI 317
             AS+
Sbjct: 567 EMASV 571


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/549 (32%), Positives = 288/549 (52%), Gaps = 43/549 (7%)

Query: 130 LVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           L+T+ + L+   G +    +LF  +PN D   +++++   +  G   + +    +M   G
Sbjct: 61  LLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSG 120

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
                 T  S+I A   L  L +GK +H  +          +   L+ +Y K   +  A+
Sbjct: 121 APQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAK 180

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
           K+     + +  ++ W +L+SGY ++    E+  LF  M+E      +  I  +L+    
Sbjct: 181 KVFD--AMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLS---- 234

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
               SC+ +GAL  G W+H Y   N   ++               N+  A ++F  + E+
Sbjct: 235 ----SCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKER 290

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           NV  WT++I+ Y M G+ ++A++LF EM   G +P+ +TF+A+LSAC+H GL+D+G    
Sbjct: 291 NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVF 350

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS-MPIPPDVSIWSSLLRACRCHQ 472
           S     Y + P ++H  CMVD+ GRAG L ++  FI   +P  P  ++W+S+L ACR H+
Sbjct: 351 SSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHR 410

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N  L     +H+   +P N G +V+L+NIYA AGR+D +  +R  +    LKKQ+GYS I
Sbjct: 411 NFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTI 470

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-----------LQETSLQ----- 576
           E     + F+ GD  +P +  IY  L+E+     + G           L+E         
Sbjct: 471 EINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRY 530

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H E+LA+AFGL+ T++  TIRIV NLRIC DCHS +K  S + +REI++RD  RFH F+ 
Sbjct: 531 HSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKD 590

Query: 637 GQCSCRDYW 645
           G CSC DYW
Sbjct: 591 GSCSCLDYW 599



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 116/275 (42%), Gaps = 51/275 (18%)

Query: 47  VERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V ++C+ +      + IHSH++      D  +   +        D+  A+++     +  
Sbjct: 131 VIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRT 190

Query: 104 IKIWNSIIENQLINGYPQEVFAIY------------------------------------ 127
           I  WNS+I     NG PQE   ++                                    
Sbjct: 191 IIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHD 250

Query: 128 --------LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
                   L +V  T L+N   +CG + +  ++FD +  R+V++W  MIS Y   G  R+
Sbjct: 251 YADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQ 310

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-LV 235
            + L ++M A G  P+ +T V+++SA      ++ G+ +   ++E+   + G   N  +V
Sbjct: 311 AMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMV 370

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           DM+ + G + +A + + ++   E    +WT+++  
Sbjct: 371 DMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGA 405


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/549 (32%), Positives = 288/549 (52%), Gaps = 43/549 (7%)

Query: 130 LVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
           L+T+ + L+   G +    +LF  +PN D   +++++   +  G   + +    +M   G
Sbjct: 125 LLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSG 184

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
                 T  S+I A   L  L +GK +H  +          +   L+ +Y K   +  A+
Sbjct: 185 APQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAK 244

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
           K+     + +  ++ W +L+SGY ++    E+  LF  M+E      +  I  +L+    
Sbjct: 245 KVFD--AMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLS---- 298

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
               SC+ +GAL  G W+H Y   N   ++               N+  A ++F  + E+
Sbjct: 299 ----SCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKER 354

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           NV  WT++I+ Y M G+ ++A++LF EM   G +P+ +TF+A+LSAC+H GL+D+G    
Sbjct: 355 NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVF 414

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS-MPIPPDVSIWSSLLRACRCHQ 472
           S     Y + P ++H  CMVD+ GRAG L ++  FI   +P  P  ++W+S+L ACR H+
Sbjct: 415 SSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHR 474

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N  L     +H+   +P N G +V+L+NIYA AGR+D +  +R  +    LKKQ+GYS I
Sbjct: 475 NFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTI 534

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-----------LQETSLQ----- 576
           E     + F+ GD  +P +  IY  L+E+     + G           L+E         
Sbjct: 535 EINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRY 594

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H E+LA+AFGL+ T++  TIRIV NLRIC DCHS +K  S + +REI++RD  RFH F+ 
Sbjct: 595 HSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKD 654

Query: 637 GQCSCRDYW 645
           G CSC DYW
Sbjct: 655 GSCSCLDYW 663



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 116/275 (42%), Gaps = 51/275 (18%)

Query: 47  VERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V ++C+ +      + IHSH++      D  +   +        D+  A+++     +  
Sbjct: 195 VIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRT 254

Query: 104 IKIWNSIIENQLINGYPQEVFAIY------------------------------------ 127
           I  WNS+I     NG PQE   ++                                    
Sbjct: 255 IIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHD 314

Query: 128 --------LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
                   L +V  T L+N   +CG + +  ++FD +  R+V++W  MIS Y   G  R+
Sbjct: 315 YADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQ 374

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-LV 235
            + L ++M A G  P+ +T V+++SA      ++ G+ +   ++E+   + G   N  +V
Sbjct: 375 AMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMV 434

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           DM+ + G + +A + + ++   E    +WT+++  
Sbjct: 435 DMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGA 469


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 185/565 (32%), Positives = 299/565 (52%), Gaps = 60/565 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  ++   ++FD L  RDV+SW ++ SCY   G  R+G+ +  +MG  GV P+ +T+ S
Sbjct: 125 KCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSS 184

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +L+DL+ GK +H F     M ++  + + LV +Y KC  + EA+ +     +  
Sbjct: 185 ILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDL--MPH 242

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLN---------- 304
            DVV W  +++ Y K+ E ++   LF +M    V  +  +W  +I G +           
Sbjct: 243 RDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEM 302

Query: 305 ----QDAEFK---------YKSCASIGALYHGIWVHVYIKKNQISID------------- 338
               Q   FK           +C+    L  G  +H Y+ ++    D             
Sbjct: 303 FRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAK 362

Query: 339 --NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
             ++ L+ ++F  +  K+V  W ++I A AM G+ ++A+ LF +M  +  +P+ VTF  +
Sbjct: 363 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 422

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           LS CSH  LV+EG    +   R + ++P   HY C+VD+  RAG L E+  FI  MP+ P
Sbjct: 423 LSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEP 482

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
             S W +LL ACR ++NV+LA+ + K L E +P N G +V L NI   A    + S++R+
Sbjct: 483 TASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRI 542

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----- 571
            +++ G+ K  G S ++ G  VH F  GD  N  S++IY  L+E+   ++  G +     
Sbjct: 543 LMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDY 602

Query: 572 -----------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                      E+   H E+LAVAFG+++ + ++TIR+  NLRICGDCH+ +K  S+V  
Sbjct: 603 VLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVG 662

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
             IV+RD+ RFH F+ G CSC+D W
Sbjct: 663 VIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 160/380 (42%), Gaps = 49/380 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G      QLFD +P  D  + +T+IS  T+ G+  E + + S +   G+ PD    ++  
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A     D    K +H       +     + N L+  Y KC  +  A+++     +   D
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVR--D 143

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-YKSCASIG- 318
           VV WT+L S YVK     +   +F EM    +    + +S +L   AE K  KS   I  
Sbjct: 144 VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHG 203

Query: 319 -ALYHGIWVHVYIKKNQISID----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            A+ HG+ V++++    +S+     ++  A  +F  +  ++V  W  V+ AY      +K
Sbjct: 204 FAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEK 263

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
              LFL+M   G + D+ T+ A++  C   G  +E  +             KMQ  G   
Sbjct: 264 GFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFR----------KMQKMGFK- 312

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE----HAFKHLTETDP 489
                                P +++I SS+L AC   +N+++ +    + F+H    D 
Sbjct: 313 ---------------------PNEITI-SSILPACSFSENLRMGKEIHCYVFRHWKVGDL 350

Query: 490 LNDGAHVLLANIYAKAGRLD 509
            +  A   L  +YAK G L+
Sbjct: 351 TSTTA---LLYMYAKCGDLN 367



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 123/304 (40%), Gaps = 71/304 (23%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV------ 189
           L  KC  ++E   +FD +P+RDV+SWN +++ Y     Y +G  L  KM  +GV      
Sbjct: 223 LYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEAT 282

Query: 190 -----------------------------SPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
                                         P+E+T+ S++ A +   +L MGK +H ++ 
Sbjct: 283 WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVF 342

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
                   +    L+ MY KCG +  ++ +     +   DVV W T++          EA
Sbjct: 343 RHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDM--MRRKDVVAWNTMIIANAMHGNGKEA 400

Query: 281 RRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
             LFD+M    V+ N +++T ++SG            C+    +  G+ +      N + 
Sbjct: 401 LFLFDKMLLSRVQPNSVTFTGVLSG------------CSHSRLVEEGVQIF-----NSMG 443

Query: 337 IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
            D+          + E +   ++ V+  Y+ AG   +A      M     +P    + AL
Sbjct: 444 RDH----------LVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMP---MEPTASAWGAL 490

Query: 397 LSAC 400
           L+AC
Sbjct: 491 LAAC 494



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
           +++ +   A  LF  I + +    +++I+A    G + +AI ++  ++E G KPD   F+
Sbjct: 23  LNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFL 82

Query: 395 ALLSACSHGG 404
           A   AC+  G
Sbjct: 83  AAAKACAVSG 92


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/599 (32%), Positives = 304/599 (50%), Gaps = 90/599 (15%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV--FTGDLGYAQQIIRQGDEPEIKIWN 108
           C + D+F+++HS  IT  +  +P    ++F F      G + YA ++  +  EP++ +WN
Sbjct: 44  CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWN 103

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTV---------LLN---------KCGK-------- 142
           ++I+         E   +YL ++   V         LLN          CGK        
Sbjct: 104 NMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVK 163

Query: 143 ---------------LKEVCQL-------FDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
                          +  +C L       FD+    DV SWN MIS Y  M  Y E + L
Sbjct: 164 FGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIEL 223

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           L +M    VSP  VT++ ++SA +K++D ++ K +H ++ E   + S  L N LV+ Y  
Sbjct: 224 LVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAA 283

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG++  A ++     +   DV+ WT++V GYV+      AR  FD+M  R+ ISWT+MI 
Sbjct: 284 CGEMDIAVRIF--RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMID 341

Query: 301 GMLN--------------QDA-----EFKYKS----CASIGALYHGIWVHVYIKKNQISI 337
           G L               Q A     EF   S    CA +G+L  G W+  YI KN+I  
Sbjct: 342 GYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN 401

Query: 338 DNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
           D +               E A  +F ++ +++ + WT+++   A  G  Q+AI +F +M+
Sbjct: 402 DVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQ 461

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
           +   +PD +T++ +LSAC+H G+VD+   F +K    + I+P + HYGCMVD+LGRAG +
Sbjct: 462 DMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLV 521

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           +E+   +  MP+ P+  +W +LL A R H +  +AE A K + E +P N   + LL NIY
Sbjct: 522 KEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIY 581

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           A   R  D+  +R K+ D+ +KK  G+SLIE  GF H+F +GD  +  SEEIY+ L E+
Sbjct: 582 AGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEEL 640


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 187/574 (32%), Positives = 299/574 (52%), Gaps = 70/574 (12%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           V+ TVLL      G++ E  +LFD++P+RDV++W  M+S Y   G   E   L  +M   
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR 203

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            V    V+  ++IS   +  ++ + + L  +  E + +  +  L+ Y+     + G + +
Sbjct: 204 NV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYI-----QAGHVED 254

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----- 301
           A +L     + E  V     ++ G+ +    D A+ +F++M ER+  +W+ MI       
Sbjct: 255 AAELFN--AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNE 312

Query: 302 -----------MLNQDAEFKYKS-------CASIGALYHGIWVHVYIKKNQISID----- 338
                      ML +     Y S       CA++  L +G  VH  + +    +D     
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVS 372

Query: 339 ----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                     N++ A  +F     K++ +W S+I  YA  G  ++A+ +F +M   G  P
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP 432

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D +T+I  L+ACS+ G V EG +  +  +   +I+P  +HY CMVDLLGR+G +EE+ + 
Sbjct: 433 DGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDL 492

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I +MP+ PD  IW +L+ ACR H+N ++AE A K L E +P N G +VLL++IY   GR 
Sbjct: 493 IKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRW 552

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF-NPHSEEIYLMLNEIEMTLQQ 567
           +D S++R  +    L K  G S IE    VH FTSGD+  +P    I  +L +++  L +
Sbjct: 553 EDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLME 612

Query: 568 QGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
            G                +  SL+ H ER AVA+GL+   E   IR++ NLR+CGDCHS 
Sbjct: 613 SGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSA 672

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +K+ +++ +REI++RD  RFH F+ G CSCRDYW
Sbjct: 673 IKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 168/395 (42%), Gaps = 71/395 (17%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS- 190
            R   L + G ++     F+ +P R   S+N +++ Y    +    LGL  +M +  ++ 
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 191 ----------------------------PDEVTMVSLISARTKLRDLEMGKNLHLF--LE 220
                                       P  V+  SL+  R  +R   +   + LF  + 
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLL--RGYVRHGLLADAIRLFQQMP 139

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           E        LL  L+D     G++ EA++L    E+ + DVV WT ++SGY ++    EA
Sbjct: 140 ERNHVSYTVLLGGLLD----AGRVNEARRLFD--EMPDRDVVAWTAMLSGYCQAGRITEA 193

Query: 281 RRLFDEMVERNLISWTLMISG---------------MLNQDAEFKYKS----------CA 315
           R LFDEM +RN++SWT MISG               ++ +  E  + +            
Sbjct: 194 RALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVE 253

Query: 316 SIGALYHGIWVHVYIKKNQISI-----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
               L++ +  H     N + +       ++ A  +F ++ E++   W+++I AY     
Sbjct: 254 DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEF 313

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
             +A+  F EM   G +P+  + I++L+ C+   ++D G +  +   R  +    +    
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC-SFDMDVFAVS 372

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++ +  + G+L+++     +   P D+ +W+S++
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFE-PKDIVMWNSMI 406



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 46/259 (17%)

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG--MLNQDAEFKYKSCASI---- 317
           +  L++GY ++   D A  LF  M  R+L S+  +ISG  +  Q       + ASI    
Sbjct: 51  YNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPP 110

Query: 318 ----------GALYHGIWVHV------YIKKNQIS----------IDNIELAYDLFSEIS 351
                     G + HG+            ++N +S             +  A  LF E+ 
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMP 170

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +++V  WT++++ Y  AG   +A  LF EM     K + V++ A++S  +  G V+    
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGEVN---- 222

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLG--RAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
            L++K  ++ + P+         L+G  +AGH+E++A    +MP  P V+  ++++    
Sbjct: 223 -LARK--LFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHP-VAACNAMMVGFG 278

Query: 470 CHQNVKLAEHAFKHLTETD 488
               V  A+  F+ + E D
Sbjct: 279 QRGMVDAAKTVFEKMCERD 297



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 21/229 (9%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P  + ++ V  + + +D    +H+ ++  +   D    + +    +  G+L  A+++   
Sbjct: 334 PSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHT 393

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKLKEV 146
            +  +I +WNS+I     +G  ++   I+  +         +T    L  C   GK+KE 
Sbjct: 394 FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEG 453

Query: 147 CQLFDKLPNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            ++F+ +     I      ++ M+      G+  E   L+  M  E   PD V   +L+ 
Sbjct: 454 REIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE---PDAVIWGALMG 510

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           A    R+ E+ +     L E     +G  +  L  +Y   G+  +A K+
Sbjct: 511 ACRMHRNAEIAEFAAKKLLELEPGNAGPYV-LLSHIYTSVGRWEDASKM 558


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/599 (32%), Positives = 304/599 (50%), Gaps = 90/599 (15%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV--FTGDLGYAQQIIRQGDEPEIKIWN 108
           C + D+F+++HS  IT  +  +P    ++F F      G + YA ++  +  EP++ +WN
Sbjct: 44  CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWN 103

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTV---------LLN---------KCGK-------- 142
           ++I+         E   +YL ++   V         LLN          CGK        
Sbjct: 104 NMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVK 163

Query: 143 ---------------LKEVCQL-------FDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
                          +  +C L       FD+    DV SWN MIS Y  M  Y E + L
Sbjct: 164 FGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIEL 223

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           L +M    VSP  VT++ ++SA +K++D ++ K +H ++ E   + S  L N LV+ Y  
Sbjct: 224 LVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAA 283

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG++  A ++     +   DV+ WT++V GYV+      AR  FD+M  R+ ISWT+MI 
Sbjct: 284 CGEMDIAVRIF--RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMID 341

Query: 301 GMLN--------------QDA-----EFKYKS----CASIGALYHGIWVHVYIKKNQISI 337
           G L               Q A     EF   S    CA +G+L  G W+  YI KN+I  
Sbjct: 342 GYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN 401

Query: 338 DNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
           D +               E A  +F ++ +++ + WT+++   A  G  Q+AI +F +M+
Sbjct: 402 DVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQ 461

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
           +   +PD +T++ +LSAC+H G+VD+   F +K    + I+P + HYGCMVD+LGRAG +
Sbjct: 462 DMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLV 521

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           +E+   +  MP+ P+  +W +LL A R H +  +AE A K + E +P N   + LL NIY
Sbjct: 522 KEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIY 581

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           A   R  D+  +R K+ D+ +KK  G+SLIE  GF H+F +GD  +  SEEIY+ L E+
Sbjct: 582 AGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEEL 640


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 189/535 (35%), Positives = 295/535 (55%), Gaps = 48/535 (8%)

Query: 148 QLFDKLPNR-DVISWNTMISCYTSMGMYREGLG----LLSKMGAEGVSPDEVTMVSLISA 202
           Q+FD++P+  DVI +NT++  Y   G    G      +  +M  EGV+PD  T VSL+ A
Sbjct: 88  QVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKA 147

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
               R  E G+  H    ++       +   L++MY +CG +  A+ +  R  +D   VV
Sbjct: 148 CASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDR--MDGECVV 205

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            +  +++  V+S+   EA  LF EM  + L   ++ +  +L+        +CA +GAL  
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLS--------ACALLGALEL 257

Query: 323 GIWVHVYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G W+H YI+K         N   ID      ++E A  +F ++  ++   W+ ++ AYA 
Sbjct: 258 GRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYAN 317

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G+ ++AI +F EM++ G KPD VTF+ +L ACSH G+V EG  +     R Y I   ++
Sbjct: 318 HGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIK 376

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HYGC+ DLL R+G LE +  FI  +PI P   +W +LL AC  H +V + +  F+ + E 
Sbjct: 377 HYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILEL 436

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           D  + G +V+ +N+ A  GR ++M+ +R  + + G+ K  G S IE    VH+F +GD  
Sbjct: 437 DDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGS 496

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQ-HRERLAVAFGLIST 590
           +PHS+E   M++E+   L+  G                 + TSL+ H E+LA++FGL++T
Sbjct: 497 HPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNT 556

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  TT+RIV NLR+C DCHS  K+ S V+NR I++RD  RFH F+ G CSC DYW
Sbjct: 557 APGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 29/271 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG ++    +FD++    V+S+N MI+      +  E L L  +M A+G+ P  VT++S
Sbjct: 185 ECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLIS 244

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA   L  LE+G+ +H ++ +  +     +   L+DMY KCG + +A  +    +++ 
Sbjct: 245 VLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVF--QDMES 302

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D   W+ ++  Y       EA  +F+EM ++ +    +   G+L         +C+  G
Sbjct: 303 RDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLY--------ACSHSG 354

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            +  G+     +++           Y + S I  K+    T ++A       A K ID  
Sbjct: 355 MVSEGLQYFDSMRE-----------YGIVSGI--KHYGCVTDLLARSGQLERAYKFID-- 399

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
               E   KP  + +  LLSAC+  G VD G
Sbjct: 400 ----ELPIKPTAILWRTLLSACAGHGDVDMG 426


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/542 (31%), Positives = 293/542 (54%), Gaps = 42/542 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +    G L +  +LF+ + +RDV++WN +I+ Y     + E + L  ++  +G+  +++T
Sbjct: 251 MFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDIT 310

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            V +++  T L  L  GK +H  ++E+       +   L+ +Y +C   G+A K+    +
Sbjct: 311 FVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIF--VD 368

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   DV+ WT +   Y ++  R EA +LF EM        +  +  +L+        +CA
Sbjct: 369 MGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD--------TCA 420

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            + AL  G  +H +I +N   ++                +  A  +F +++++++ +W S
Sbjct: 421 HLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNS 480

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++ AYA  G+  + + LF +M+  G K D V+F+++LSA SH G V +GY +     + +
Sbjct: 481 MLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDF 540

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMP-IPPDVSIWSSLLRACRCHQNVKLAEH 479
           +I P  + YGC+VDLLGRAG ++E+ + +  +    PD  +W +LL ACR H     A+ 
Sbjct: 541 SITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKA 600

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A + + E DP + GA+V+L+N+YA AG  D ++R+R  +R  G+KK+ G S IE    VH
Sbjct: 601 AAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVH 660

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAV 583
           +F  GD  +P    IY  L+ +   ++  G                 ++    H ERLA+
Sbjct: 661 EFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAI 720

Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           AFGL+ST   T +R++ NLR+C DCH+  K  S++  REI++RD  RFH F+ G+CSC+D
Sbjct: 721 AFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKD 780

Query: 644 YW 645
           YW
Sbjct: 781 YW 782



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 180/397 (45%), Gaps = 58/397 (14%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           QI++QG E ++      +   LIN Y                  NKCG ++     F +L
Sbjct: 131 QILQQGFEGDV-----FVGTALINMY------------------NKCGSVRGAWDSFKRL 167

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
            +RDV+SW  MI+       +     L  +M  +GV P+++T+ ++ +A      L  GK
Sbjct: 168 EHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGK 227

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            ++  +    M+    ++N  ++M+   G +G+A++L    ++ + DVV W  +++ YV+
Sbjct: 228 FIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLF--EDMVDRDVVTWNIVITFYVQ 285

Query: 274 SNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY 329
           +    EA RLF  +    ++ N I++ LM++               S+ +L  G  +H  
Sbjct: 286 NENFGEAVRLFGRLQQDGIKANDITFVLMLN------------VYTSLTSLAKGKVIHEL 333

Query: 330 IKKNQISIDNIEL---------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           +K+     D +                 A+ +F ++  K+V  WT +  AYA  G  ++A
Sbjct: 334 VKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEA 393

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434
           + LF EM+  G +P   T +A+L  C+H   + +G    S        + +M     +++
Sbjct: 394 LQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIE-NGFRMEMVVETALIN 452

Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           + G+ G + E+ +    M    D+ +W+S+L A   H
Sbjct: 453 MYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQH 488



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 137/298 (45%), Gaps = 30/298 (10%)

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
           +N L+ G+  +++A             +CG + E  Q+F+ L  +DV +W  MI  Y   
Sbjct: 38  QNNLVCGHLIQMYA-------------QCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQ 84

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G Y   LG+  +M  E V P +VT V++++A      L+ G  +H  + +   +    + 
Sbjct: 85  GDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVG 144

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
             L++MY KCG +  A     R E    DVV WT +++  V+ ++   AR L+  M    
Sbjct: 145 TALINMYNKCGSVRGAWDSFKRLE--HRDVVSWTAMIAACVQHDQFALARWLYRRMQLDG 202

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL--------- 342
           ++   + +  + N   +  Y    S G   + + V   + ++ + + N  +         
Sbjct: 203 VVPNKITLYTVFNAYGDPHY---LSEGKFIYSL-VSSRVMESDVRVMNSAMNMFGNAGLL 258

Query: 343 --AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
             A  LF ++ +++V  W  VI  Y    +  +A+ LF  +++ G K + +TF+ +L+
Sbjct: 259 GDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLN 316



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 161/357 (45%), Gaps = 36/357 (10%)

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD    V+L+   +  ++++ G+ +H  + +   + +  +  +L+ MY +CG + EAQ++
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 251 LGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
              +EI +  DV  WT ++  Y +  + D A  +F +M E +++   +    +LN     
Sbjct: 63  ---FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILN----- 114

Query: 310 KYKSCASIGALYHGIWVH-----------VYIKKNQISIDN----IELAYDLFSEISEKN 354
              +CAS  +L  G+ +H           V++    I++ N    +  A+D F  +  ++
Sbjct: 115 ---ACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRD 171

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YD 411
           V  WT++IAA         A  L+  M+  G  P+++T   + +A      + EG   Y 
Sbjct: 172 VVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYS 231

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
            +S  SRV  ++  ++     +++ G AG L ++      M +  DV  W+ ++     +
Sbjct: 232 LVS--SRV--MESDVRVMNSAMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITFYVQN 286

Query: 472 QNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           +N   A   F  L +     ND   VL+ N+Y     L     I   +++ G  + +
Sbjct: 287 ENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDV 343


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 206/680 (30%), Positives = 327/680 (48%), Gaps = 98/680 (14%)

Query: 47  VERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V R+C  + +  R   +H H+I      D  +   +    V  GD+  A+ +  +    +
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLY---------LVTRTVLLNKC-------------- 140
              WN++I     N    E   ++           L+T T +++ C              
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHG 320

Query: 141 ------------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
                                   G   E   +F K+  +D++SW  MIS Y   G+  +
Sbjct: 321 YVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK 380

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            +   + M  EGV PDE+T+ S++SA   L  L+ G  LH F + + +     + N L+D
Sbjct: 381 AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLID 440

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLI 293
           MY KC  I +A ++  R  I   +V+ WT+++ G   +    EA   F +M+   + N +
Sbjct: 441 MYSKCRCIDKALEVFHR--IPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSV 498

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-------------- 339
           +   ++S            +CA IGAL  G  +H +  +  +  D               
Sbjct: 499 TLVSVLS------------ACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCG 546

Query: 340 -IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            +E A++ F+   EK+V  W  ++  YA  G    A++LF +M E+   PD++TF +LL 
Sbjct: 547 RMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           ACS  G+V +G ++       ++I P ++HY  +VDLLGRAG LE++  FI  MPI PD 
Sbjct: 606 ACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDP 665

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
           +IW +LL ACR +QNV+L E A +H+ E D  + G ++LL N+YA +G+ D+++R+R  +
Sbjct: 666 AIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIM 725

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ------- 571
           R+  L    G S +E  G VH F +GD F+P  +EI  +L      ++  GL        
Sbjct: 726 RENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRR 785

Query: 572 --------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
                   E    H ERLA+AFGLI+T   T I +  NL +C +CH+ +K  S+V  R I
Sbjct: 786 DDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGI 845

Query: 624 VIRDNGRFHRFQGGQCSCRD 643
            +RD  +FH F+ G CSC D
Sbjct: 846 SVRDTEQFHHFKDGVCSCGD 865



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 33/288 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L E   +F K+  RD+ SWN ++  Y   G + E L L  +M   G+ PD  T   ++
Sbjct: 143 GDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVL 202

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
                L DL  G+ +HL +     +    ++N L+ MY KCG I  A+ +  R  +   D
Sbjct: 203 RTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDR--MPRRD 260

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + W  ++SGY +++   E  RLF  M    V+ +L++ T +IS            +C +
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVIS------------ACEA 308

Query: 317 IGALYHGIWVHVYIKKN----QISIDN--IEL---------AYDLFSEISEKNVYLWTSV 361
           +G    G  VH Y+ K     ++S++N  I++         A  +FS++  K++  WT++
Sbjct: 309 LGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAM 368

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           I+ Y   G  +KA++ +  ME  G  PD++T  ++LSAC+  GL+D+G
Sbjct: 369 ISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG 416


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 184/592 (31%), Positives = 302/592 (51%), Gaps = 66/592 (11%)

Query: 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           I++  L +  P     +  Y  +R         L +   LFD+ P RD+  ++++++  +
Sbjct: 111 ILKEGLAHHPPNPAALVSAYAKSRL--------LPDALHLFDETPRRDIYIYSSLLTAVS 162

Query: 170 SMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
                   L +L  M  A+ + PD   + S+ S   +LR   +G+ LH     S      
Sbjct: 163 HSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDD 222

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            + + LVDMY KCG   + +K+     +   + V+WT LVSGY  +   +EA +LF  M 
Sbjct: 223 VVKSSLVDMYCKCGSPDDGRKVFD--SMSAKNSVVWTALVSGYASNGRSEEALQLFRSMP 280

Query: 289 ERNLISWTLMISGMLNQ--------------------DAEFKYK---------SCASIGA 319
            RNL +WT +ISG++N                     D  F            +   +G 
Sbjct: 281 GRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGR 340

Query: 320 LYHGIWVHVYIKKNQI----------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
             HG  + +    N I             +I  A ++F  I+ ++V  WT+++   A  G
Sbjct: 341 QLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHG 400

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
            A++A+ L+  M   G KP++VTF+ L+ ACSH GLV +G          Y I P++QHY
Sbjct: 401 RAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHY 460

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
            C +DLL R+GHL E+   +T+MP  PD + W +LL AC  +++ ++       L E  P
Sbjct: 461 TCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRP 520

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            +   ++LL+N+YA  G+ D ++++R  +  + ++K+ GYS IE G     F +G++   
Sbjct: 521 KDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLD 580

Query: 550 HSEEIYLMLNEIEMTLQQQG-----------LQETSLQHR-----ERLAVAFGLISTSEK 593
             EEI + L E+ + ++++G           L+E+  +H      ERLAVAFGLI +   
Sbjct: 581 VREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPG 640

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + IR+V NLR+C DCH+ MK+ S++ +R+IV+RD+ RFH F+GG+CSC ++W
Sbjct: 641 SVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 60/348 (17%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++H+H + +    D  + + + +     G     +++        +   NS++   L++G
Sbjct: 208 QLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDS-----MSAKNSVVWTALVSG 262

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           Y                     G+ +E  QLF  +P R++ +W  +IS   + G     +
Sbjct: 263 YASN------------------GRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAV 304

Query: 179 GLLSKMGAEGVSPDEVTMVSL-ISARTKLRDLEMGKNLHLFLEESTMK---ISGSLL-NY 233
            L  +M  +GV  D+  ++S+ I     L    +G+ LH     STM+   +S  ++ N 
Sbjct: 305 ELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLH----GSTMRLGFLSNMIVGNA 360

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           L+DMY KC  I  A+++     I   DV+ WTT+V G  +    +EA  L+D MV     
Sbjct: 361 LIDMYSKCSDILSAREVF--EGITFRDVISWTTMVVGEAQHGRAEEALALYDRMV----- 413

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
                ++G    +  F       +G +Y      +  K  Q+  ++++  Y +   +   
Sbjct: 414 -----LAGAKPNEVTF-------VGLIYACSHAGLVQKGRQL-FESMKNEYGITPRLQHY 460

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
             YL        + +GH  +A +L   M     +PD+ T+ ALLSAC+
Sbjct: 461 TCYL-----DLLSRSGHLLEAEELMTTMP---YEPDEATWGALLSACT 500


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 183/554 (33%), Positives = 290/554 (52%), Gaps = 53/554 (9%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           ++  +L+N   + G L    ++FD++P+R + +WN MI+         EGL L  +M   
Sbjct: 24  MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 83

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G SPDE T+ S+ S    LR + +G+ +H +  +  +++   + + L  MY + GK+ + 
Sbjct: 84  GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDG 143

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGML 303
           + ++    +   ++V W TL+ G  ++   +    L+  M       N I++  ++S   
Sbjct: 144 EIVIRSMPVR--NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLS--- 198

Query: 304 NQDAEFKYKSCASIGALYHGIWVH---VYIKKNQISIDNIEL------------AYDLFS 348
                    SC+ +     G  +H   + I  + +      L            A   FS
Sbjct: 199 ---------SCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 249

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVD 407
           E  +++  +W+S+I+AY   G   +AI+LF  M E+T  + ++V F+ LL ACSH GL D
Sbjct: 250 EREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKD 309

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           +G +        Y  KP ++HY C+VDLLGRAG L+++   I SMPI  D+ IW +LL A
Sbjct: 310 KGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSA 369

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           C  H+N ++A+  FK + + DP +   +VLLAN++A A R  D+S +R  +RD  +KK+ 
Sbjct: 370 CNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEA 429

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS------------- 574
           G S  E  G VH+F  GD     S+EIY  L E+ + ++ +G +  +             
Sbjct: 430 GISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKE 489

Query: 575 ---LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
              +QH E+LAVAF L+   E   IRI+ NLR+C DCH   K  S + NREI +RD  RF
Sbjct: 490 SDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRF 549

Query: 632 HRFQGGQCSCRDYW 645
           H F  G+CSC DYW
Sbjct: 550 HHFINGKCSCGDYW 563



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 62/292 (21%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           S+   ++IH + I   L  D  +++ +    +  G L   + +IR      +  WN++I 
Sbjct: 104 SVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIM 163

Query: 113 NQLINGYPQEVFAIYLYLVTR------------TVL------------------------ 136
               NG P+ V  +YLY + +            TVL                        
Sbjct: 164 GNAQNGCPETV--LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGA 221

Query: 137 -------------LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
                         +KCG L +  + F +  + D + W++MIS Y   G   E + L + 
Sbjct: 222 SSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNT 281

Query: 184 MGAE-GVSPDEVTMVSLISA--RTKLRDLEMGKNLHLF---LEESTMKISGSLLNYLVDM 237
           M  +  +  +EV  ++L+ A   + L+D    K L LF   +E+   K        +VD+
Sbjct: 282 MAEQTNMEINEVAFLNLLYACSHSGLKD----KGLELFDMMVEKYGFKPGLKHYTCVVDL 337

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
             + G + +A+ ++    I + D+V+W TL+S        + A+R+F E+++
Sbjct: 338 LGRAGCLDQAEAIIRSMPI-KTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ 388


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 170/473 (35%), Positives = 254/473 (53%), Gaps = 61/473 (12%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L+ +Y   G + +A+++        +D   W T+VSGY K  + + AR +F  M ER 
Sbjct: 155 NCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERG 214

Query: 292 LISWTLMISGMLNQDAEFK------------------------YKSCASIGALYHGIWVH 327
           L+SW+ MI   + +  EF                          K+CA +GAL  G WVH
Sbjct: 215 LVSWSAMIDACI-RAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVH 273

Query: 328 VYIKKNQI--SIDNIEL----------------AYDLFSEISEKNVYLWTSVIAAYAMAG 369
            ++K   +  S DN+ L                A+ +F  +  ++V LW ++I   AM G
Sbjct: 274 RFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNG 333

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
           H ++A++LF  M + G  P++ TF+ +L AC+H G VDEG +        + I+P+ +HY
Sbjct: 334 HGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCD-HGIEPRREHY 392

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GC+ DLLGRAG LEE+   +  MP+ P  S W +L+ +C  H NV + E   K L E +P
Sbjct: 393 GCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEP 452

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            + G +V+L N+YA  G  +D   +R  + + G KK+ G S IE  G VH+F SGD  +P
Sbjct: 453 DDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHP 512

Query: 550 HSEEIYLMLNEIEMTLQQQGLQETSLQ-----------------HRERLAVAFGLISTSE 592
            + +IY +L ++E  LQ  G  + + Q                 H ERLA+AFG+++T  
Sbjct: 513 QTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSYHSERLALAFGILNTPR 572

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              IRIV NLR+C DCH + K+ S++Y REI++RD  RFH F+GG CSC D+W
Sbjct: 573 HMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRGGVCSCNDFW 625



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 26/246 (10%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSI 110
           C  +      H   +    +  P ++  + +     G L  A+++    D       ++ 
Sbjct: 129 CDRLAAAGLAHGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVF---DTSGATSLDAF 185

Query: 111 IENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS 170
             N +++GY                   KCG L+   ++F ++P R ++SW+ MI     
Sbjct: 186 SWNTMVSGY------------------GKCGDLEAAREVFVRMPERGLVSWSAMIDACIR 227

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS- 229
            G + E L +  +M   G  PD V + S++ A   L  LE G+ +H FL+   +  S   
Sbjct: 228 AGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDN 287

Query: 230 --LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             L   LVDMY KCG + EA  +     +   DVVLW  ++ G   +     A  LF  M
Sbjct: 288 VMLETALVDMYCKCGCMDEAWWVFD--GVQSQDVVLWNAMIGGLAMNGHGKRALELFRRM 345

Query: 288 VERNLI 293
           ++   +
Sbjct: 346 LDMGFV 351



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 1/151 (0%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + E   +FD + ++DV+ WN MI      G  +  L L  +M   G  P+E T V 
Sbjct: 300 KCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVV 359

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A T    ++ GK +   + +  ++        L D+  + G + EA+ +L    + E
Sbjct: 360 VLCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPM-E 418

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
                W  L+S  +  N      R+  +++E
Sbjct: 419 PHASQWGALMSSCLMHNNVGVGERVGKKLIE 449


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 184/564 (32%), Positives = 297/564 (52%), Gaps = 44/564 (7%)

Query: 115 LINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM-GM 173
           L    P   FA  L  +     L+  G +     +F ++P+ ++ SWN++I  Y+ +  +
Sbjct: 12  LTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTL 71

Query: 174 YREGLGLLSKMGAEGVS-PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
            +E + L  K+   G   P+  T+  ++ A   +     G  +H  + +     S  +  
Sbjct: 72  SKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQT 131

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            LV+ Y KC +IG A+K+    E+   ++V WT ++SG+ +    DEA  LF EM +  +
Sbjct: 132 SLVNFYGKCEEIGFARKVFE--EMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGI 189

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------------- 338
               + +  +++        +CA  GAL  G W+H YI+K  +  D              
Sbjct: 190 QPDAMTLVSVVS--------ACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKC 241

Query: 339 -NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             IE A  +F  +  K+   W+S+I  +A  G AQ AID F +M ET   PD VTF+A+L
Sbjct: 242 GCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVL 301

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           SAC+HGGLV  G  F S     + I+P ++HYGC VDLL R+G +EE+    T+M IPP+
Sbjct: 302 SACAHGGLVSRGRRFWSLMLE-FGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPN 360

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
            + W SLL  C+  + + L E   ++L E +PLN   +++++N+Y+   + + MS +R  
Sbjct: 361 AATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKV 420

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
           +++  +K   G S IE  G VH+F  GD  +P  + +   + E+ M ++  G        
Sbjct: 421 MKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDV 480

Query: 571 --------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                   +E +L +H ER A+A+GL+ T     IR+V NLR+C DCH  +K+ S++Y R
Sbjct: 481 LHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYER 540

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           EI++RD  RFH+F  G CSC+D+W
Sbjct: 541 EIIVRDRVRFHKFIKGTCSCKDFW 564


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 191/550 (34%), Positives = 286/550 (52%), Gaps = 50/550 (9%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMI-SCYTSMGMYREGLGLLSKMGAEGV 189
           T LLN     G +    Q+F  +PN D   + ++I S   S       L   S+M    V
Sbjct: 48  TKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNV 107

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
           SP   T  S+I +   L  L+ G+ +H  +      +   +   LV +Y KCG +  A+K
Sbjct: 108 SPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARK 167

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           +  +  I E  +V W +++SGY ++    EA  LFD M E          +G+    A F
Sbjct: 168 VFDK--IRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKE----------TGVEPDSATF 215

Query: 310 K--YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISE 352
                +CA +GA   G WVH YI  N + ++               N+  A ++F  + E
Sbjct: 216 VSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKE 275

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           +NV  WT++I+ Y   G+  +A++LF EM   G  P+ +TF+A+LSAC+H GLV+EG   
Sbjct: 276 RNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRL 335

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT-SMPIPPDVSIWSSLLRACRCH 471
            +     Y++ P ++H  C+VD+LGRAG L+E+ NFI   +P  P  +I +++L AC+ H
Sbjct: 336 FASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMH 395

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           +N  L     +HL   +P N   +V+L+NIYA AGR+D +  +R  +    LKKQ+GYS 
Sbjct: 396 KNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYST 455

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------L 575
           +E     + F+ GD  +  +  IY  L+E+     + G    S                 
Sbjct: 456 VEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHELEEEEREYALR 515

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LA+AFGL+ TS  T IRIV NLR+C DCHS +K  S + +REI++RD  RFH F+
Sbjct: 516 YHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIVRDKLRFHHFK 575

Query: 636 GGQCSCRDYW 645
            G CSC DYW
Sbjct: 576 VGSCSCLDYW 585


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 191/594 (32%), Positives = 291/594 (48%), Gaps = 90/594 (15%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKIW 107
           +C+S+ + + IH+ +I+T L+ D    +++  F   +   +L Y  +I+          W
Sbjct: 63  ACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNXFSW 122

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTV-------------------------------- 135
           N  I   + +  P     +Y  ++ +                                  
Sbjct: 123 NMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVI 182

Query: 136 ----------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                           +L  CG+L    +LFD+   RD++SWN++I+ Y   G+  E   
Sbjct: 183 QLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFD 242

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  KMG   V PDEVTM+ ++SA  +L +L +G+ LH  +EE  + ++  L N L+DMY 
Sbjct: 243 LYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYI 302

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
           KC  I EA K+L    + +  VV WTT+V GY K    + A RLF+EM E++++ W  +I
Sbjct: 303 KCKNI-EAAKILFE-NMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALI 360

Query: 300 SGMLNQD------AEFK-----------------YKSCASIGALYHGIWVHVYIKKNQIS 336
            G +         A F                    +C+ +GAL  GIW+H Y+ K+ ++
Sbjct: 361 GGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLT 420

Query: 337 ID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
           ++               NI+ A  +F E+  +N   WT++I   A+ G    AI  F EM
Sbjct: 421 MNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEM 480

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
              G  PD++TFI +LSAC HGGLVD+G D+  + +  Y I PK++HY C+VDLLGRAG 
Sbjct: 481 ISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGF 540

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           LEE+   I SMP  PD  +W +L    R H NV + E A   L E DP + G +VLLAN+
Sbjct: 541 LEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANM 600

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           Y  A   +   ++R  + + G++K  G S IE  G V+ F   D  +P SE+IY
Sbjct: 601 YGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIY 654


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 187/611 (30%), Positives = 317/611 (51%), Gaps = 95/611 (15%)

Query: 46  MVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQGDEPE 103
           ++ER C S+ + ++I + +++T L+ +   ++++  F   +   +L Y  +I+ +  E  
Sbjct: 63  ILER-CKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELN 121

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLV-------------------------------- 131
           +  WN+ I   + +G  +  F +Y  ++                                
Sbjct: 122 VFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVL 181

Query: 132 ----------------TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
                               +L  CG+L     +F+K   RD+++WN+MI+     G+  
Sbjct: 182 GHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAI 241

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           E + +  +M AE V P+E+TM+ +IS+ ++++DL +GK  H +++E  ++ +  L N L+
Sbjct: 242 EAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALM 301

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           DMY KCG++  A+ L     + +  +V WTT+V GY +    D AR +  ++ E++++ W
Sbjct: 302 DMYVKCGELLTARVLFDN--MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPW 359

Query: 296 TLMISGMLNQD------AEFK-----------------YKSCASIGALYHGIWVHVYIKK 332
             +ISG +         A F                    +C+ +GAL  GIW+H YI++
Sbjct: 360 NAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER 419

Query: 333 NQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           +++SID               NI  A  +F EI ++N   WT+VI   A+ G+AQ A+  
Sbjct: 420 HKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSY 479

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M   G  PD++TF+ +LSAC HGGLV+EG  + S+ S  +N+ PK++HY CMVDLLG
Sbjct: 480 FSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLG 539

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAGHLEE+   + +MP+  D ++  +L  ACR + NV++ E     L E DP + G +VL
Sbjct: 540 RAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVL 599

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           LA++Y++A    +    R  + D G++K  G SL+E  G VH+F   D+ +P SE IY  
Sbjct: 600 LASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIY-- 657

Query: 558 LNEIEMTLQQQ 568
             E  +TL +Q
Sbjct: 658 --ECLVTLTKQ 666


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 192/579 (33%), Positives = 306/579 (52%), Gaps = 56/579 (9%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           ++I   II   LI  YP     + L  ++R  L           + F +L +  V  +NT
Sbjct: 20  LQIHAHIIRTTLIQ-YP----TVSLQFLSRIALSGPLQDASYSQRFFGQLSHPLVSHYNT 74

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MI   +     ++GL L   M   G++ D ++    + +  +   L  G  +H  + +  
Sbjct: 75  MIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDG 134

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
            +    LL  ++D+Y  C + G+A K+    E+   D V W  ++S  +++N   +A  L
Sbjct: 135 HQWDTLLLTAVMDLYSLCQRGGDACKVFD--EMPHRDTVAWNVMISCCIRNNRTRDALSL 192

Query: 284 FDEM------VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK----KN 333
           FD M       E + ++  L++            ++CA + AL  G  +H YI     ++
Sbjct: 193 FDVMQGSSYKCEPDDVTCLLLL------------QACAHLNALEFGERIHGYIMERGYRD 240

Query: 334 QISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
            +++ N           ++ AY++F  +  KNV  W+++I+  AM G+ ++AI+ F EM 
Sbjct: 241 ALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEML 300

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
             G  PD  TF  +LSACS+ G+VDEG  F  + SR + + P + HYGCMVDLLGRAG L
Sbjct: 301 RIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLL 360

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
           +++   I SM + PD ++W +LL ACR H +V L E    HL E      G +VLL NIY
Sbjct: 361 DKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIY 420

Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIE 562
           + AG  + ++ +R  +++  ++   G S IE  G VH+F   D+ +  + EIY  L+EI 
Sbjct: 421 SSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEIN 480

Query: 563 MTLQQQG-LQETSLQ---------------HRERLAVAFGLISTSEKTTIRIVNNLRICG 606
             L+  G + E S +               H E+LAVAFG+++T   T +R+ +NLR+C 
Sbjct: 481 HQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVCV 540

Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           DCH+F+K+ S VYNR++V+RD+ RFH F+GG+CSC DYW
Sbjct: 541 DCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 179/559 (32%), Positives = 292/559 (52%), Gaps = 58/559 (10%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVSLIS 201
           L +   LFD+ P RD+  ++++++  +        L +L  M  A+ + PD   + S+ S
Sbjct: 54  LPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVAS 113

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
              +LR   +G+ LH     S       + + LVDMY KCG   + +K+     +   + 
Sbjct: 114 VFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFD--SMSAKNS 171

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ---------------- 305
           V+WT LVSGY  +   +EA +LF  M  RNL +WT +ISG++N                 
Sbjct: 172 VVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRD 231

Query: 306 ----DAEFKYK---------SCASIGALYHGIWVHVYIKKNQI----------SIDNIEL 342
               D  F            +   +G   HG  + +    N I             +I  
Sbjct: 232 GVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILS 291

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A ++F  I+ ++V  WT+++   A  G A++A+ L+  M   G KP++VTF+ L+ ACSH
Sbjct: 292 AREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSH 351

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GLV +G          Y I P++QHY C +DLL R+GHL E+   +T+MP  PD + W 
Sbjct: 352 AGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWG 411

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
           +LL AC  +++ ++       L E  P +   ++LL+N+YA  G+ D ++++R  +  + 
Sbjct: 412 ALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLE 471

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-----------LQ 571
           ++K+ GYS IE G     F +G++     EEI + L E+ + ++++G           L+
Sbjct: 472 IRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLE 531

Query: 572 ETSLQHR-----ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
           E+  +H      ERLAVAFGLI +   + IR+V NLR+C DCH+ MK+ S++ +R+IV+R
Sbjct: 532 ESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVR 591

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D+ RFH F+GG+CSC ++W
Sbjct: 592 DSSRFHHFEGGKCSCSEFW 610



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 60/348 (17%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++H+H + +    D  + + + +     G     +++    D    K  NS++   L++G
Sbjct: 126 QLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVF---DSMSAK--NSVVWTALVSG 180

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           Y                     G+ +E  QLF  +P R++ +W  +IS   + G     +
Sbjct: 181 YASN------------------GRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAV 222

Query: 179 GLLSKMGAEGVSPDEVTMVSL-ISARTKLRDLEMGKNLHLFLEESTMK---ISGSLL-NY 233
            L  +M  +GV  D+  ++S+ I     L    +G+ LH     STM+   +S  ++ N 
Sbjct: 223 ELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLH----GSTMRLGFLSNMIVGNA 278

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           L+DMY KC  I  A+++     I   DV+ WTT+V G  +    +EA  L+D MV     
Sbjct: 279 LIDMYSKCSDILSAREVF--EGITFRDVISWTTMVVGEAQHGRAEEALALYDRMV----- 331

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
                ++G    +  F       +G +Y      +  K  Q+  ++++  Y +   +   
Sbjct: 332 -----LAGAKPNEVTF-------VGLIYACSHAGLVQKGRQL-FESMKNEYGITPRLQHY 378

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
             YL        + +GH  +A +L   M     +PD+ T+ ALLSAC+
Sbjct: 379 TCYL-----DLLSRSGHLLEAEELMTTMP---YEPDEATWGALLSACT 418



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 26/186 (13%)

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
           N I+ N LI+ Y                  +KC  +    ++F+ +  RDVISW TM+  
Sbjct: 272 NMIVGNALIDMY------------------SKCSDILSAREVFEGITFRDVISWTTMVVG 313

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
               G   E L L  +M   G  P+EVT V LI A +    ++ G+ L   + ++   I+
Sbjct: 314 EAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESM-KNEYGIT 372

Query: 228 GSLLNY--LVDMYFKCGKIGEAQKLLGR--YEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
             L +Y   +D+  + G + EA++L+    YE DE     W  L+S   K  + +   R+
Sbjct: 373 PRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEAT---WGALLSACTKYKDAEMCIRI 429

Query: 284 FDEMVE 289
            D+++E
Sbjct: 430 SDKLLE 435


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/554 (33%), Positives = 290/554 (52%), Gaps = 53/554 (9%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           ++  +L+N   + G L    ++FD++P+R + +WN MI+         EGL L  +M   
Sbjct: 26  MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 85

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G SPDE T+ S+ S    LR + +G+ +H +  +  +++   + + L  MY + GK+ + 
Sbjct: 86  GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDG 145

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGML 303
           + ++    +   ++V W TL+ G  ++   +    L+  M       N I++  ++S   
Sbjct: 146 EIVIRSMPVR--NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLS--- 200

Query: 304 NQDAEFKYKSCASIGALYHGIWVH---VYIKKNQISIDNIEL------------AYDLFS 348
                    SC+ +     G  +H   + I  + +      L            A   FS
Sbjct: 201 ---------SCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 251

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVD 407
           E  +++  +W+S+I+AY   G   +AI+LF  M E+T  + ++V F+ LL ACSH GL D
Sbjct: 252 EREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKD 311

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           +G +        Y  KP ++HY C+VDLLGRAG L+++   I SMPI  D+ IW +LL A
Sbjct: 312 KGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSA 371

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           C  H+N ++A+  FK + + DP +   +VLLAN++A A R  D+S +R  +RD  +KK+ 
Sbjct: 372 CNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEA 431

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS------------- 574
           G S  E  G VH+F  GD     S+EIY  L E+ + ++ +G +  +             
Sbjct: 432 GISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKE 491

Query: 575 ---LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
              +QH E+LAVAF L+   E   IRI+ NLR+C DCH   K  S + NREI +RD  RF
Sbjct: 492 SDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRF 551

Query: 632 HRFQGGQCSCRDYW 645
           H F  G+CSC DYW
Sbjct: 552 HHFINGKCSCGDYW 565



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 62/292 (21%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           S+   ++IH + I   L  D  +++ +    +  G L   + +IR      +  WN++I 
Sbjct: 106 SVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIM 165

Query: 113 NQLINGYPQEVFAIYLYLVTR------------TVL------------------------ 136
               NG P+ V  +YLY + +            TVL                        
Sbjct: 166 GNAQNGCPETV--LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGA 223

Query: 137 -------------LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
                         +KCG L +  + F +  + D + W++MIS Y   G   E + L + 
Sbjct: 224 SSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNT 283

Query: 184 MGAE-GVSPDEVTMVSLISA--RTKLRDLEMGKNLHLF---LEESTMKISGSLLNYLVDM 237
           M  +  +  +EV  ++L+ A   + L+D    K L LF   +E+   K        +VD+
Sbjct: 284 MAEQTNMEINEVAFLNLLYACSHSGLKD----KGLELFDMMVEKYGFKPGLKHYTCVVDL 339

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
             + G + +A+ ++    I + D+V+W TL+S        + A+R+F E+++
Sbjct: 340 LGRAGCLDQAEAIIRSMPI-KTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ 390


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 306/573 (53%), Gaps = 81/573 (14%)

Query: 88  DLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC 147
           +LG A  + R  DE  I + +++    +I+G                  L K G L +  
Sbjct: 155 ELGLAGDVRRAFDE--IPVKDAVSWTMVISG------------------LAKMGMLSDAR 194

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            L  + P RDVISW ++I+ Y+     +E +     M +EG++PD+VT++ ++SA ++L+
Sbjct: 195 LLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLK 254

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL---LGRYEIDEVDVVLW 264
           DLE+G +LH  ++E  M +S +L+  L+DMY KCG  G A+++   +GR    +     W
Sbjct: 255 DLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQS----W 310

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAEFKY--------- 311
             ++ GY K    D AR LFD+M  R++I++  MI+G ++    ++A   +         
Sbjct: 311 NAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLR 370

Query: 312 ----------KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
                      +CAS+GAL  G  +H  I+   +  D                +  A  +
Sbjct: 371 VDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIV 430

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  + +++V+ WT++IA  A  G  +  ++ F +M   G +P+ V++IA+L+ACSH  L+
Sbjct: 431 FQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLL 490

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           +EG  +  +   +YNI P+++HYGCM+DLLGR+G L+E+ + + +MP+ P+  IW+S+L 
Sbjct: 491 NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILS 550

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           ACR H+ + LA+ A +HL + +P  D  +V L NI   + + +D S+IRM + +  +KK 
Sbjct: 551 ACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKT 610

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------- 570
            GYS +   G VHKF   D  +P   EI  ML EI   L+  G                 
Sbjct: 611 AGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPITSQVTVDVDEEEK 670

Query: 571 QETSLQHRERLAVAFGLISTSEKTTIRIVNNLR 603
           ++T L H E+LA+AFGL+S +    + I+ NLR
Sbjct: 671 EQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLR 703



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 186/409 (45%), Gaps = 15/409 (3%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            L +  G   +  +  + + + DVISWN+++S Y   G  +E +  L +M   G  P   +
Sbjct: 940  LYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRS 999

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISG-SLLNYLVDMYFKCGKIGEAQKLLGRY 254
             VSL++   K  D ++G  +H  + +     S   +   L+DMY KC     +  +    
Sbjct: 1000 FVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFN-- 1057

Query: 255  EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            EI  + +    +L++  ++ N  D A  +   M+   +    +  S  +   +     S 
Sbjct: 1058 EIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSL 1117

Query: 315  ASIGALYHGIWVHVYIKKNQISIDNIELAYD----------LFSEISEKNVYLWTSVIAA 364
             S   L H   V +  + +     ++  AY           +F  + + NV  +T++I+A
Sbjct: 1118 TSCQML-HSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISA 1176

Query: 365  YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
             A  G   +A++LF +M  +G KPD VTF+  ++ C   G+ +EG   +        + P
Sbjct: 1177 CARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDP 1236

Query: 425  KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
              +H+ CMV+LL R G ++E+   +   P+      WSSLL++C+ H    L + A   L
Sbjct: 1237 DERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANML 1296

Query: 485  TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
             +    +    + ++N +   G  +   RI+ ++ ++   K+ G+SLIE
Sbjct: 1297 IDVGRKDPATTLQVSNFFNDIGDRETALRIK-EMTNVKEVKKSGHSLIE 1344



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 128/312 (41%), Gaps = 52/312 (16%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCY---TSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           L+    LFD++P    +    + +C+   TS G       L  +M    V PD  T   L
Sbjct: 53  LRYALHLFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFL 112

Query: 200 I--SARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEI 256
              S+ ++ R L +   LH     + +  +   + N L+ MY + G  G+ ++     EI
Sbjct: 113 FKCSSSSRPRAL-LCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFD--EI 169

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE------FK 310
              D V WT ++SG  K     +AR L  +   R++ISWT +I+     D        FK
Sbjct: 170 PVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFK 229

Query: 311 -----------------YKSCASIGALYHGIWVHVYIKKNQISI-DNIELAY-DLFSEIS 351
                              +C+ +  L  G  +H  +K+  +S+ +N+ +A  D++++  
Sbjct: 230 NMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCG 289

Query: 352 E--------------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
           +              +    W ++I  Y   GH   A  LF +ME      D +TF +++
Sbjct: 290 DFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVR----DIITFNSMI 345

Query: 398 SACSHGGLVDEG 409
           +   H G + E 
Sbjct: 346 TGYIHSGQLREA 357


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 189/553 (34%), Positives = 289/553 (52%), Gaps = 92/553 (16%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMG-MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
           ++F ++P  +V+SW  +IS Y   G      + LL +M  E + P+ +T  SL+ A   L
Sbjct: 308 KVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANL 367

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            D + G+ +H       MK S                            I  V+VV    
Sbjct: 368 SDQDSGRQIH----ARVMKTS----------------------------IGNVNVV-GNA 394

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLIS--------------WTLMISGMLNQDAEFKYK 312
           LVS Y +S   +EAR+ FD++ ERNL+S              W+  I  M    + F + 
Sbjct: 395 LVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRSNASWSSQIESMDVGVSTFTFA 454

Query: 313 S----CASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEI-SE 352
           S     A++G    G  +H    K     D                ++ A   F E+  +
Sbjct: 455 SLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDD 514

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
            NV  WTS+I+A A  GHA++A+ LF +M  +G KP+ VT+IA+LSACSH GLV EG ++
Sbjct: 515 HNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEY 574

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
                + + + P+M+HY CMVDLL R+G ++E+  FI  MP   D  +W +LL ACR ++
Sbjct: 575 FRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYE 634

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N+++ E A +H+ + +P +   +VLL+N+YA  G  D+++RIR  +R   L K+ G S +
Sbjct: 635 NIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWM 694

Query: 533 EQGGFVHKFTSGDIFNPHSEEIY--------------------LMLNEIEMTLQQQGLQE 572
             G  +H+F +GD  +P ++EIY                    ++L+++   L++Q L  
Sbjct: 695 HVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCL-- 752

Query: 573 TSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
             LQH E++AVAFGLI+T     IRI  NLR+C DCHS +K  S+   REI++RD+ RFH
Sbjct: 753 --LQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFH 810

Query: 633 RFQGGQCSCRDYW 645
           R + G+CSC +YW
Sbjct: 811 RMKDGKCSCGEYW 823



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 183/435 (42%), Gaps = 57/435 (13%)

Query: 135 VLLNKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
            + +KCG ++   ++FD +   RD++SW  M  C T  G  +E L LL +M   G+ P+ 
Sbjct: 87  TMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLESGLRPNA 146

Query: 194 VTMVSLISA--RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
            T+ +   A    +L     G  L   ++        S+   L+DM+ + G +  A+K+ 
Sbjct: 147 FTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVF 206

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
               + E  VV+WT +++ YV+     +A  LF  M+E         +S M++  AE   
Sbjct: 207 N--GLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAE--- 261

Query: 312 KSCASIGALYHGIWVHV-YIKKNQISI------------DNIELAYDLFSEISEKNVYLW 358
           +  A +G   H + + +  +    +S              ++E A  +F  +   NV  W
Sbjct: 262 QGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSW 321

Query: 359 TSVIAAYAM-AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK-- 415
           T++I+ Y    G    A++L  EM     +P+ +T+ +LL AC++    D G    ++  
Sbjct: 322 TALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVM 381

Query: 416 KSRVYNIK-------PKMQHYGCMVDL------------------LGRAGHLEES-ANFI 449
           K+ + N+              GCM +                   +G  G    S ++ I
Sbjct: 382 KTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRSNASWSSQI 441

Query: 450 TSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
            SM +      ++SLL A        +  +L   + K   E+D    G    L ++Y++ 
Sbjct: 442 ESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESD---KGISNSLVSMYSRC 498

Query: 506 GRLDDMSRIRMKLRD 520
           G LDD  R   ++ D
Sbjct: 499 GYLDDACRAFDEMED 513



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 11/204 (5%)

Query: 211 MGKNLHL-FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
           +G+ LH   L    +     + N L+ MY KCG +  A+++         D+V WT +  
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMR-GLRDLVSWTAMAF 119

Query: 270 GYVKSNERDEARRLFDEMVERNLI--SWTLMISGMLNQDAE-FKYKSCASIG-ALYHGIW 325
              ++    EA  L  EM+E  L   ++TL  +       E F+      +G A+  G W
Sbjct: 120 CLTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFW 179

Query: 326 ---VHVYIKKNQISIDNIEL--AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
              V V      +   N +L  A  +F+ + E+ V +WT +I  Y   G A KA++LFL 
Sbjct: 180 GTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLG 239

Query: 381 MEETGTKPDQVTFIALLSACSHGG 404
           M E G +PD  T  +++SAC+  G
Sbjct: 240 MLEDGFEPDGYTMSSMVSACAEQG 263


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 195/580 (33%), Positives = 296/580 (51%), Gaps = 90/580 (15%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEM 211
            P  D   +NT++  Y+        + +  +M  +G + PD  +   ++ A    R L  
Sbjct: 232 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRT 291

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS-- 269
           G  +H    +  +     +   L+ MY +CG +G A+K+    E+ + ++V W  +V+  
Sbjct: 292 GFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFD--EMPQPNLVAWNAVVTAC 349

Query: 270 -----------------------------GYVKSNERDEARRLFDEMVERNLISWTLMIS 300
                                        GY+K+ E + A+R+F EM  R+ +SW+ MI 
Sbjct: 350 FRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIV 409

Query: 301 GMLNQ---DAEFKY--------------------KSCASIGALYHGIWVHVYIKK----- 332
           G  +    +  F Y                     +C+  GA   G  +H +++K     
Sbjct: 410 GFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSW 469

Query: 333 ----NQISID------NIELAYDLFSEISEK-NVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
               N   ID      N+ +A  +F  + EK ++  WTS+IA  AM GH ++AI +F EM
Sbjct: 470 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEM 529

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
            E+G  PD+++FI+LL ACSH GL+ EG  + SK  RVY+I+P ++HYGCMVDL GR+G 
Sbjct: 530 TESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGK 589

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           L+++ +FI  MPIPP   +W +LL AC  H N++LAE   + L E DP N G  VLL+N+
Sbjct: 590 LQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNV 649

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           YA AG+  D++ IR  +    +KK   +SL+E G  ++KFT+ +       E +  L EI
Sbjct: 650 YATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEI 709

Query: 562 EMTLQQQG-----------------LQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRI 604
            + L+ +                   ++   +H E+LA+AF L    +   IRIV NLRI
Sbjct: 710 ILRLRDEAGYAPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRI 769

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           C DCH+ MK+TS+VY  EIVIRD  RFH F+ G CSC DY
Sbjct: 770 CRDCHAVMKLTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 185/526 (35%), Positives = 290/526 (55%), Gaps = 36/526 (6%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           + F+  P +   +W+++ISC+    +    L  L KM A  + PD+  + S   +   L 
Sbjct: 71  RAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILS 130

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
             ++G+++H    ++       + + LVDMY KCG+I  A+K+    E+ + +VV W+ +
Sbjct: 131 RCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFD--EMPQRNVVTWSGM 188

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           + GY +  E +EA  LF E +  NL       S +++  A     +   +G   HG+ + 
Sbjct: 189 MYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCAN---STLLELGRQIHGLSIK 245

Query: 328 VYIKKNQISIDNI----------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
                +     ++          E AY +F+E+  KN+ +W +++ AYA   H QK I+L
Sbjct: 246 SSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIEL 305

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS--KKSRVYNIKPKMQHYGCMVDL 435
           F  M+ +G KP+ +TF+ +L+ACSH GLVDEG  +    K+SR   I+P  +HY  +VD+
Sbjct: 306 FKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESR---IEPTDKHYASLVDM 362

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
           LGRAG L+E+   IT+MPI P  S+W +LL +C  H+N +LA  A   + E  P++ G H
Sbjct: 363 LGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMH 422

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           + L+N YA  GR +D ++ R  LRD G KK+ G S +E+   VH F +G+  +  S+EIY
Sbjct: 423 ISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIY 482

Query: 556 LMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIV 599
             L E+   +++ G                  +T   H ERLA+AFGLI+      IR++
Sbjct: 483 EKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVM 542

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+CGDCH+ +K  S    R I++RDN RFHRF+ G+CSC DYW
Sbjct: 543 KNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 122/263 (46%), Gaps = 29/263 (11%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG++    ++FD++P R+V++W+ M+  Y  MG   E L L  +   E ++ ++ +  S
Sbjct: 163 KCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSS 222

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           +IS       LE+G+ +H    +S+   S  + + LV +Y KCG    A ++    E+  
Sbjct: 223 VISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFN--EVPV 280

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            ++ +W  ++  Y + +   +   LF  M    +    +    +LN        +C+  G
Sbjct: 281 KNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLN--------ACSHAG 332

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            +  G +    +K+++I             E ++K+   + S++     AG  Q+A+++ 
Sbjct: 333 LVDEGRYYFDQMKESRI-------------EPTDKH---YASLVDMLGRAGRLQEALEVI 376

Query: 379 LEMEETGTKPDQVTFIALLSACS 401
             M      P +  + ALL++C+
Sbjct: 377 TNMP---IDPTESVWGALLTSCT 396



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 83/165 (50%), Gaps = 1/165 (0%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG  +   Q+F+++P +++  WN M+  Y      ++ + L  +M   G+ P+ +T
Sbjct: 261 LYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFIT 320

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            +++++A +    ++ G+     ++ES ++ +      LVDM  + G++ EA +++    
Sbjct: 321 FLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMP 380

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           ID  + V W  L++        + A    D++ E   +S  + IS
Sbjct: 381 IDPTESV-WGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHIS 424



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 40/258 (15%)

Query: 265 TTLVSGYVKSNERDEARRLFDEMVER--------------NLISW------TLMISGMLN 304
             L++ Y KS    ++RR F++  ++              N + W        M++G L 
Sbjct: 54  NNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLR 113

Query: 305 QDAEF---KYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
            D        KSCA +     G  VH    K     D                I  A  +
Sbjct: 114 PDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKM 173

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F E+ ++NV  W+ ++  YA  G  ++A+ LF E        +  +F +++S C++  L+
Sbjct: 174 FDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLL 233

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           + G   +   S   +          +V L  + G  E +      +P+  ++ IW+++L+
Sbjct: 234 ELGRQ-IHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPV-KNLGIWNAMLK 291

Query: 467 ACRCHQNVKLAEHAFKHL 484
           A   H + +     FK +
Sbjct: 292 AYAQHSHTQKVIELFKRM 309


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 297/554 (53%), Gaps = 51/554 (9%)

Query: 128 LYLVTRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           ++L TR V +  +CG L +   + D++P R V+SW TMIS Y+    + E L L  KM  
Sbjct: 77  VFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR 136

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G  P+E T+ +++++ +  + +  GK +H  L ++  +    + + L+DMY K   I E
Sbjct: 137 AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQE 196

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMISGM 302
           A+++     + E DVV  T ++SGY +    +EA    R+L+ E ++ N +++T +++ +
Sbjct: 197 ARRVFD--TLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTAL 254

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ----ISIDNI---------ELAYD--LF 347
                       + + +L +G  VH  I + +    +++ N          +L Y   +F
Sbjct: 255 ------------SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVF 302

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             + E++V  W +++  Y   G   + I LF ++ +   KPD VT +A+LS CSHGGLVD
Sbjct: 303 DNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVD 361

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG D      +  +      HYGC++DLLGR+G LE++ N I +MP     SIW SLL A
Sbjct: 362 EGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGA 421

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H NV + E   + L E +P N G +V+L+NIYA AG   D+ ++R  + +  + K+ 
Sbjct: 422 CRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEP 481

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
           G S I     +H F S + F+P  ++I   + EI + ++  G                 +
Sbjct: 482 GQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKE 541

Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
              L H E+LA+ FGL++T    TIR++ NLRIC DCH+F K  S+VY REI +RD  RF
Sbjct: 542 RMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRF 601

Query: 632 HRFQGGQCSCRDYW 645
           H    G C+C DYW
Sbjct: 602 HLLTHGNCTCGDYW 615



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 35/303 (11%)

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
           S M   G S       + I+A  + R L  G+ +H  +  +  + +  L   LV MY +C
Sbjct: 31  SGMALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRC 90

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           G + +A+ +L R  + E  VV WTT++SGY ++    EA  LF +M+    I     ++ 
Sbjct: 91  GALDDARNVLDR--MPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLAT 148

Query: 302 MLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI---------------SIDNIELAYDL 346
           +L         SC+   ++Y G  VH  + K                    +NI+ A  +
Sbjct: 149 VLT--------SCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRV 200

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  + E++V   T++I+ YA  G  ++A+DLF ++   G + + VTF  L++A S    +
Sbjct: 201 FDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASL 260

Query: 407 DEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           D G     K+     ++ ++  +      ++D+  + G L  S     +M +   V  W+
Sbjct: 261 DYG-----KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM-LERSVVSWN 314

Query: 463 SLL 465
           ++L
Sbjct: 315 AML 317


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 193/570 (33%), Positives = 298/570 (52%), Gaps = 44/570 (7%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           +++   I    L +  P    +  L  +     L+  G +    +LF ++   ++ SWN+
Sbjct: 70  MRVLRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 129

Query: 164 MI-SCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           MI  C  S    +E + L  KM   G  +P+  TM  ++ A + +  LE G+ +H  + +
Sbjct: 130 MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLK 189

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           S    S  +   LV+ Y KC  I  A K+    EI + ++V W+T++SGY +    +EA 
Sbjct: 190 SGFGSSPFVETALVNFYAKCEDIVLASKVFD--EITDRNLVAWSTMISGYARIGLVNEAL 247

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--- 338
            LF +M +  ++   + +  +++        +CA+ GAL  G WVH YI K  I  D   
Sbjct: 248 GLFRDMQKAGVVPDEVTMVSVIS--------ACAASGALDTGKWVHAYINKQLIETDLEL 299

Query: 339 ------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        IE A ++F  +  K+   W+S+I   A+ G A+ A++ F  MEE   
Sbjct: 300 STALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKV 359

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           KP+ VTFI +LSAC+H GLV EG  + S     + I P M+ YGCMVDLL RA  +E++ 
Sbjct: 360 KPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDAC 418

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
             + +MPI P+  IW +LL  C+  +N+  +E   + L E +P N   ++LL+N+YA   
Sbjct: 419 TLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMS 478

Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
           + + MS++R K++ MG+K   G S IE  G VH+F  GD  +P + E+  +L +I   + 
Sbjct: 479 QWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVH 538

Query: 567 QQGLQ---------------ETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
             G Q               E +L +H ERLA+A+GL+ T     IRIV NLR+CGDCH 
Sbjct: 539 AVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHE 598

Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
             K+ S  Y REI++RD  RFH+F  G CS
Sbjct: 599 VTKIISAEYRREIIVRDRVRFHKFVNGSCS 628


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 201/625 (32%), Positives = 310/625 (49%), Gaps = 71/625 (11%)

Query: 76  STQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII----------------ENQLINGY 119
           + Q+ + L   G L  A +++ Q   P  + +  +I                 + L NG 
Sbjct: 49  NNQLIQSLCKEGKLKQALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGS 108

Query: 120 PQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
            Q+ F     L T+ + + +  G +    ++FDK   R +  WN +    T  G   E L
Sbjct: 109 DQDPF-----LATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVL 163

Query: 179 GLLSKMGAEGVSPDEVT----MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
           GL  KM   GV  D  T    + + +++      L  GK +H  L          ++  L
Sbjct: 164 GLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTL 223

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           VDMY + G +  A  +     +   +VV W+ +++ Y K+ +  EA R F EM+     S
Sbjct: 224 VDMYARFGCVDYASYVFNGMPVR--NVVSWSAMIACYAKNGKAFEALRTFREMMTETKDS 281

Query: 295 W---TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS--------------- 336
                 M+S +         ++CAS+ AL  G  +H YI +  +                
Sbjct: 282 SPNSVTMVSVL---------QACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGR 332

Query: 337 IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
              +++   +F  + +++V  W S+I++Y + G+ +KAI +F EM   G  P  VTF+++
Sbjct: 333 CGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSV 392

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           L ACSH GLV+EG        R + IKP+++HY CMVDLLGRA  L+E+A  +  M   P
Sbjct: 393 LGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
              +W SLL +CR H NV+LAE A + L   +P N G +VLLA+IYA+A   D++ R++ 
Sbjct: 453 GPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKK 512

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------ 570
            L   GL+K  G   +E    ++ F S D FNP  E+I+  L ++   ++++G       
Sbjct: 513 LLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKG 572

Query: 571 ----------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                     +   L H E+LA+AFGLI+TS+   IRI  NLR+C DCH F K  S+   
Sbjct: 573 VLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFME 632

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           +EI++RD  RFHRF+ G CSC DYW
Sbjct: 633 KEILVRDVNRFHRFKNGVCSCGDYW 657


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 190/568 (33%), Positives = 285/568 (50%), Gaps = 78/568 (13%)

Query: 144 KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
           +E  +LFDK+P  + ISWN ++S Y   GM  E   +  KM    V    V+  ++I   
Sbjct: 11  REARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSWTAMIRGY 66

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
            +   +E  + L   + E  +     +L  L++     G++ EA++L     +   DVV 
Sbjct: 67  VQEGLIEEAELLFWRMPERNVVSWTVMLGGLIE----DGRVDEARQLFDMMPVK--DVVA 120

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG---------------------- 301
            T ++ G        EAR +FDEM +RN+++WT MISG                      
Sbjct: 121 STNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELE 180

Query: 302 -------MLNQDAEFKYKS-------CASIGALYHGIWVHVYIKKNQISID--------- 338
                  M  +     + S       C S+ +L HG  VH  + ++Q  ID         
Sbjct: 181 ALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLIT 240

Query: 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                 ++  A  +F   S K++ +W S+IA YA  G  +KA+++F +M  +   PD++T
Sbjct: 241 MYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEIT 300

Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
           FI +LSACS+ G V EG +        Y + PK +HY CMVDLLGRAG L E+ N I +M
Sbjct: 301 FIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENM 360

Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
           P+  D  +W +LL ACR H+N+ LAE A K L + +P N G ++LL+N+Y+   R  D+ 
Sbjct: 361 PVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVV 420

Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFT-SGDIFNPHSEEIYLMLNEIEMTLQQQGL- 570
            +R  +R   L+K  G S IE    VH F+  G   +P  E I   L ++   L++ G  
Sbjct: 421 ELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYC 480

Query: 571 -----------QETSLQ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
                      +E  +     H E+LAVA+GL+   E   IR++ NLR+CGD HS +K+ 
Sbjct: 481 PDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLI 540

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRD 643
           +QV  REI++RD  RFH F+ G CSC D
Sbjct: 541 AQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 45/224 (20%)

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297
           YF+  +  EA+KL  +  + E + + W  LVSGYV++    EAR++FD+M ERN++SWT 
Sbjct: 4   YFQNKRPREARKLFDK--MPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTA 61

Query: 298 MISGMLN----QDAEFKY-----KSCASIGALYHGIWVHVYIKKNQISIDNIEL------ 342
           MI G +     ++AE  +     ++  S   +  G+     + + +   D + +      
Sbjct: 62  MIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAS 121

Query: 343 ---------------AYDLFSEISEKNVYLWTSVIAA-------------YAMAGHAQKA 374
                          A ++F E+ ++NV  WTS+I+              Y   G   +A
Sbjct: 122 TNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEA 181

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           + LF  M+  G +P   + I++LS C     +D G    S+  R
Sbjct: 182 LALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVR 225



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 48/201 (23%)

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++GY ++    EAR+LFD+M E N ISW  ++SG                          
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSG-------------------------- 34

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
            Y++   IS      A  +F ++ E+NV  WT++I  Y   G  ++A  LF  M E    
Sbjct: 35  -YVQNGMIS-----EARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNV- 87

Query: 388 PDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
              V++  +L      G VDE    +D +  K  V +          M+D L   G L E
Sbjct: 88  ---VSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTN--------MIDGLCSEGRLIE 136

Query: 445 SANFITSMPIPPDVSIWSSLL 465
           +      MP   +V  W+S++
Sbjct: 137 AREIFDEMP-QRNVVAWTSMI 156



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 89/192 (46%), Gaps = 20/192 (10%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P  + V+ V  S +S+D   ++HS L+ +    D  +S+ +    +  GDL  A+++  +
Sbjct: 198 PSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDR 257

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV---------LLNKC---GKLKEV 146
               +I +WNSII     +G+ ++   ++  + + ++         +L+ C   GK+KE 
Sbjct: 258 FSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEG 317

Query: 147 CQLFDKLPNRDVISWNT-----MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            ++F+ + ++  +   T     M+      G   E + L+  M  E    D +   +L+ 
Sbjct: 318 LEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEA---DAIVWGALLG 374

Query: 202 ARTKLRDLEMGK 213
           A    ++L++ +
Sbjct: 375 ACRTHKNLDLAE 386


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 186/555 (33%), Positives = 299/555 (53%), Gaps = 42/555 (7%)

Query: 122 EVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
           E   + +Y    T LL +C  +++   LF  + +RD I+W TM++  T  G+  E L + 
Sbjct: 208 EAKTVVMYNTLITGLL-RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVF 266

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            +M AEGV  D+ T  S+++A   L   E GK +H ++  +  + +  + + LVDMY KC
Sbjct: 267 RRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC 326

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
             I  A+ +  R      +++ WT ++ GY ++   +EA R F EM    +      +  
Sbjct: 327 RSIRLAEAVFRRMTCR--NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGS 384

Query: 302 MLNQDAEFKYKSCASIGALYHGIWVHV---------YIKKNQISI------DNIELAYDL 346
           +++        SCA++ +L  G   H          YI  +   +       +IE A+ L
Sbjct: 385 VIS--------SCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F E+S  +   WT+++  YA  G A++ IDLF +M   G KPD VTFI +LSACS  GLV
Sbjct: 437 FDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLV 496

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           ++G D+     + ++I P   HY CM+DL  R+G  +E+  FI  MP  PD   W++LL 
Sbjct: 497 EKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           +CR   N+++ + A ++L ETDP N  ++VLL +++A  G+  +++ +R  +RD  +KK+
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKE 616

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE--TSL--------- 575
            G S I+    VH F++ D  +P S  IY  L  +   + ++G +   +S+         
Sbjct: 617 PGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADK 676

Query: 576 -----QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
                 H E+LA+AFGLI   ++  IRIV NLR+C DCH+  K  S++  R+I++RD  R
Sbjct: 677 VHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVR 736

Query: 631 FHRFQGGQCSCRDYW 645
           FH+F  G CSC D+W
Sbjct: 737 FHKFSDGTCSCGDFW 751



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 178/379 (46%), Gaps = 48/379 (12%)

Query: 130 LVTRTVLLNKCGK---LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL-SKMG 185
           L TR  LL+       + ++ +LF  +P RD +S+N +I+ ++S G     + L  + + 
Sbjct: 79  LFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLR 138

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            E V P  +T+ ++I   + L D  +G ++H  +          + + LVDMY K G I 
Sbjct: 139 EESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIR 198

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
           +A+++    E++   VV++ TL++G ++    ++A+ LF  MV+R+ I+WT M++G+   
Sbjct: 199 DARRVF--QEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQN 256

Query: 306 DAEFK-----------------------YKSCASIGALYHGIWVHVYIKKNQISIDN--- 339
             + +                         +C ++ A   G  +H YI +     DN   
Sbjct: 257 GLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYE-DNVFV 315

Query: 340 -------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        I LA  +F  ++ +N+  WT++I  Y     +++A+  F EM+  G 
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
           KPD  T  +++S+C++   ++EG  F    + V  +   +     +V L G+ G +E++ 
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHC-LALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 447 NFITSMPIPPDVSIWSSLL 465
                M     VS W++L+
Sbjct: 435 RLFDEMSFHDQVS-WTALV 452


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 188/535 (35%), Positives = 295/535 (55%), Gaps = 48/535 (8%)

Query: 148 QLFDKLPNR-DVISWNTMISCYTSMGMYREGLG----LLSKMGAEGVSPDEVTMVSLISA 202
           Q+FD++P+  DV+ +NT++  Y   G    G      +  +M  EGV+PD  T VSL+ A
Sbjct: 88  QVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLLKA 147

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
               R  E G+  H    ++       +   L++MY +CG +  A+ +  R  +D   VV
Sbjct: 148 CASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDR--MDGECVV 205

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            +  +++  V+S+   EA  LF EM  + L   ++ +  +L+        +CA +GAL  
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLS--------ACALLGALEL 257

Query: 323 GIWVHVYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G W+H YI+K         N   ID      ++E A  +F ++  ++   W+ ++ AYA 
Sbjct: 258 GRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYAN 317

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G+ ++AI +F EM++ G KPD VTF+ +L ACSH G+V EG  +     R Y I   ++
Sbjct: 318 HGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIK 376

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HYGC+ DLL R+G LE +  FI  +PI P   +W +LL AC  H +V + +  F+ + E 
Sbjct: 377 HYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILEL 436

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           D  + G +V+ +N+ A  GR ++M+ +R  + + G+ K  G S IE    VH+F +GD  
Sbjct: 437 DDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGS 496

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQ-HRERLAVAFGLIST 590
           +PHS+E   M++E+   L+  G                 + TSL+ H E+LA++FGL++T
Sbjct: 497 HPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNT 556

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  TT+RIV NLR+C DCHS  K+ S V+NR I++RD  RFH F+ G CSC DYW
Sbjct: 557 APGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 29/271 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG ++    +FD++    V+S+N MI+      +  E L L  +M A+G+ P  VT++S
Sbjct: 185 ECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLIS 244

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA   L  LE+G+ +H ++ +  +     +   L+DMY KCG + +A  +    +++ 
Sbjct: 245 VLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVF--QDMES 302

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            D   W+ ++  Y       EA  +F+EM ++ +    +   G+L         +C+  G
Sbjct: 303 RDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVL--------YACSHSG 354

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            +  G+     +++           Y + S I  K+    T ++A       A K ID  
Sbjct: 355 MVSEGLQYFDSMRE-----------YGIVSGI--KHYGCVTDLLARSGQLERAYKFID-- 399

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
               E   KP  + +  LLSAC+  G VD G
Sbjct: 400 ----ELPIKPTAILWRTLLSACAGHGDVDMG 426


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 188/574 (32%), Positives = 299/574 (52%), Gaps = 70/574 (12%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           V+ TVLL      G++ E  +LFD++P+RDV++W  M+S Y   G   E   L  +M   
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR 203

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            V    V+  ++IS   +  ++ + + L  +  E + +  +  L+ Y+     + G + +
Sbjct: 204 NV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYI-----QAGHVED 254

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----- 301
           A +L     + E  V     ++ G+ +    D A+ +F++M ER+  +W+ MI       
Sbjct: 255 AAELFN--AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNE 312

Query: 302 -----------MLNQDAEFKYKS-------CASIGALYHGIWVHVYIKKNQISID----- 338
                      ML +     Y S       CA++  L +G  VH  + +    +D     
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVS 372

Query: 339 ----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                     N++ A  +F     K++ +W S+I  YA  G  ++A+ +F +M   G  P
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP 432

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D +T+I  L+ACS+ G V EG +  +  +   +I+P  +HY CMVDLLGR+G +EE+ + 
Sbjct: 433 DGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDL 492

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I +MP+ PD  IW +L+ ACR H+N ++AE A K L E +P N G +VLL++IY   GR 
Sbjct: 493 IKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRW 552

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF-NPHSEEIYLMLNEIEMTLQQ 567
           +D S++R  +    L K  G S IE    VH FTSGD+  +P    I  +L +++  L +
Sbjct: 553 EDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLME 612

Query: 568 QGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
            G                +  SL+ H ER AVA+GL+   E   IR++ NLR+CGDCHS 
Sbjct: 613 SGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSA 672

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +K+ +++ +REIV+RD  RFH F+ G CSCRDYW
Sbjct: 673 IKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 168/395 (42%), Gaps = 71/395 (17%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS- 190
            R   L + G ++     F+ +P R   S+N +++ Y    +    LGL  +M +  ++ 
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 191 ----------------------------PDEVTMVSLISARTKLRDLEMGKNLHLF--LE 220
                                       P  V+  SL+  R  +R   +   + LF  + 
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLL--RGYVRHGLLADAIRLFQQMP 139

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           E        LL  L+D     G++ EA++L    E+ + DVV WT ++SGY ++    EA
Sbjct: 140 ERNHVSYTVLLGGLLD----AGRVNEARRLFD--EMPDRDVVAWTAMLSGYCQAGRITEA 193

Query: 281 RRLFDEMVERNLISWTLMISG---------------MLNQDAEFKYKS----------CA 315
           R LFDEM +RN++SWT MISG               ++ +  E  + +            
Sbjct: 194 RALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVE 253

Query: 316 SIGALYHGIWVHVYIKKNQISI-----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
               L++ +  H     N + +       ++ A  +F ++ E++   W+++I AY     
Sbjct: 254 DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEF 313

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
             +A+  F EM   G +P+  + I++L+ C+   ++D G +  +   R  +    +    
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC-SFDMDVFAVS 372

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++ +  + G+L+++     +   P D+ +W+S++
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFE-PKDIVMWNSMI 406



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 46/259 (17%)

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG--MLNQDAEFKYKSCASI---- 317
           +  L++GY ++   D A  LF  M  R+L S+  +ISG  +  Q       + ASI    
Sbjct: 51  YNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPP 110

Query: 318 ----------GALYHGIWVHV------YIKKNQIS----------IDNIELAYDLFSEIS 351
                     G + HG+            ++N +S             +  A  LF E+ 
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMP 170

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +++V  WT++++ Y  AG   +A  LF EM     K + V++ A++S  +  G V+    
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGEVN---- 222

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLG--RAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
            L++K  ++ + P+         L+G  +AGH+E++A    +MP  P V+  ++++    
Sbjct: 223 -LARK--LFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHP-VAACNAMMVGFG 278

Query: 470 CHQNVKLAEHAFKHLTETD 488
               V  A+  F+ + E D
Sbjct: 279 QRGMVDAAKTVFEKMRERD 297



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 21/229 (9%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P  + ++ V  + + +D    +H+ ++  +   D    + +    +  G+L  A+++   
Sbjct: 334 PSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHT 393

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKLKEV 146
            +  +I +WNS+I     +G  ++   I+  +         +T    L  C   GK+KE 
Sbjct: 394 FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEG 453

Query: 147 CQLFDKLPNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            ++F+ +     I      ++ M+      G+  E   L+  M  E   PD V   +L+ 
Sbjct: 454 REIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE---PDAVIWGALMG 510

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           A    R+ E+ +     L E     +G  +  L  +Y   G+  +A K+
Sbjct: 511 ACRMHRNAEIAEVAAKKLLELEPGNAGPYV-LLSHIYTSVGRWEDASKM 558


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 293/545 (53%), Gaps = 47/545 (8%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L+  G L     L    P  +   +NT++  ++   +       LS   +    PD  T 
Sbjct: 39  LSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMPSPPDNFTF 98

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
             L+   ++ +   +GK LH  L +        + N L+ MY + G +  A+ L  R  +
Sbjct: 99  PFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDR--M 156

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKSCA 315
              DVV WT+++ G V  +   EA  LF+ M++  + ++   +IS +         ++CA
Sbjct: 157 PHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVL---------RACA 207

Query: 316 SIGALYHGIWVHVYIKKNQISIDN-----------------IELAYDLFSEISEKNVYLW 358
             GAL  G  VH  +++  I I +                 I  A  +F ++  ++V++W
Sbjct: 208 DSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVW 267

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T++I+  A  G  + AID+F++ME +G KPD+ T  A+L+AC + GL+ EG+   S   R
Sbjct: 268 TAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQR 327

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            Y +KP +QH+GC+VDLL RAG L+E+ +F+ +MPI PD  +W +L+ AC+ H +   AE
Sbjct: 328 RYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAE 387

Query: 479 HAFKHLTETDPLND--GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
              KHL   D   D  G+++L +N+YA  G+  + + +R  +   GL K  G S IE  G
Sbjct: 388 RLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDG 447

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------QETSLQ---HRER 580
            VH+F  GD  +P +EEI++ L E+   ++++G              +E ++Q   H E+
Sbjct: 448 GVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEK 507

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+A+GLI     +TIRIV NLR C DCH FMK+ S++Y R+I++RD  RFH F+ G+CS
Sbjct: 508 LALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYKRDIIVRDRIRFHHFKNGECS 567

Query: 641 CRDYW 645
           C+DYW
Sbjct: 568 CKDYW 572



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 34/288 (11%)

Query: 124 FAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           FA  LY+  + VLL+   + G L     LFD++P+RDV+SW +MI    +  +  E + L
Sbjct: 126 FAPDLYI--QNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINL 183

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI--SGSLLNYLVDMY 238
             +M   GV  +E T++S++ A      L MG+ +H  LEE  ++I    ++   LVDMY
Sbjct: 184 FERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMY 243

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            K G I  A+K+    ++   DV +WT ++SG        +A  +F +M    +      
Sbjct: 244 AKGGCIASARKVFD--DVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERT 301

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN---QISIDNIELAYDLFSEIS---- 351
           ++ +L         +C + G +  G  +   +++    + SI +     DL +       
Sbjct: 302 VTAVLT--------ACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKE 353

Query: 352 ----------EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
                     E +  LW ++I A  + G A +A  L   +E    + D
Sbjct: 354 AEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRAD 401


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 187/574 (32%), Positives = 299/574 (52%), Gaps = 70/574 (12%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           V+ TVLL      G++ E  +LFD++P+RDV++W  M+S Y   G   E   L  +M   
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR 203

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            V    V+  ++IS   +  ++ + + L  +  E + +  +  L+ Y+     + G + +
Sbjct: 204 NV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYI-----QAGHVED 254

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----- 301
           A +L     + E  V     ++ G+ +    D A+ +F++M ER+  +W+ MI       
Sbjct: 255 AAELFN--AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNE 312

Query: 302 -----------MLNQDAEFKYKS-------CASIGALYHGIWVHVYIKKNQISID----- 338
                      ML +     Y S       CA++  L +G  VH  + +    +D     
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVS 372

Query: 339 ----------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                     N++ A  +F     K++ +W S+I  YA  G  ++A+ +F +M   G  P
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP 432

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D +T+I  L+ACS+ G V EG +  +  +   +I+P  +HY CMVDLLGR+G +EE+ + 
Sbjct: 433 DGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDL 492

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           I +MP+ PD  IW +L+ ACR H+N ++AE A K L E +P N G +VLL++IY   GR 
Sbjct: 493 IKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRW 552

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF-NPHSEEIYLMLNEIEMTLQQ 567
           +D S++R  +    L K  G S IE    VH FTSGD+  +P    I  +L +++  L +
Sbjct: 553 EDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLME 612

Query: 568 QGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
            G                +  SL+ H ER AVA+GL+   E   IR++ NLR+CGDCHS 
Sbjct: 613 SGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSA 672

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +K+ +++ +REI++RD  RFH F+ G CSCRDYW
Sbjct: 673 IKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 168/395 (42%), Gaps = 71/395 (17%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS- 190
            R   L + G ++     F+ +P R   S+N +++ Y    +    LGL  +M +  ++ 
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 191 ----------------------------PDEVTMVSLISARTKLRDLEMGKNLHLF--LE 220
                                       P  V+  SL+  R  +R   +   + LF  + 
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLL--RGYVRHGLLADAIRLFQQMP 139

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           E        LL  L+D     G++ EA++L    E+ + DVV WT ++SGY ++    EA
Sbjct: 140 ERNHVSYTVLLGGLLD----AGRVNEARRLFD--EMPDRDVVAWTAMLSGYCQAGRITEA 193

Query: 281 RRLFDEMVERNLISWTLMISG---------------MLNQDAEFKYKS----------CA 315
           R LFDEM +RN++SWT MISG               ++ +  E  + +            
Sbjct: 194 RALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVE 253

Query: 316 SIGALYHGIWVHVYIKKNQISI-----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
               L++ +  H     N + +       ++ A  +F ++ E++   W+++I AY     
Sbjct: 254 DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEF 313

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
             +A+  F EM   G +P+  + I++L+ C+   ++D G +  +   R  +    +    
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRC-SFDMDVFAVS 372

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++ +  + G+L+++     +   P D+ +W+S++
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFE-PKDIVMWNSMI 406



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 46/259 (17%)

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG--MLNQDAEFKYKSCASI---- 317
           +  L++GY ++   D A  LF  M  R+L S+  +ISG  +  Q       + ASI    
Sbjct: 51  YNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPP 110

Query: 318 ----------GALYHGIWVHV------YIKKNQIS----------IDNIELAYDLFSEIS 351
                     G + HG+            ++N +S             +  A  LF E+ 
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMP 170

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           +++V  WT++++ Y  AG   +A  LF EM     K + V++ A++S  +  G V+    
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGEVN---- 222

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLG--RAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
            L++K  ++ + P+         L+G  +AGH+E++A    +MP  P V+  ++++    
Sbjct: 223 -LARK--LFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHP-VAACNAMMVGFG 278

Query: 470 CHQNVKLAEHAFKHLTETD 488
               V  A+  F+ + E D
Sbjct: 279 QRGMVDAAKTVFEKMCERD 297



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 21/229 (9%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P  + ++ V  + + +D    +H+ ++  +   D    + +    +  G+L  A+++   
Sbjct: 334 PSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHT 393

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKLKEV 146
            +  +I +WNS+I     +G  ++   I+  +         +T    L  C   GK+KE 
Sbjct: 394 FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEG 453

Query: 147 CQLFDKLPNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            ++F+ +     I      ++ M+      G+  E   L+  M  E   PD V   +L+ 
Sbjct: 454 REIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE---PDAVIWGALMG 510

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           A    R+ E+ +     L E     +G  +  L  +Y   G+  +A K+
Sbjct: 511 ACRMHRNAEIAEFAAKKLLELEPGNAGPYV-LLSHIYTSVGRWEDASKM 558


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 290/537 (54%), Gaps = 42/537 (7%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L+E  ++F+++P ++ + W  MI  + +         L S+M   G   D   +  LI
Sbjct: 162 GSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLI 221

Query: 201 SARTKLRDLEMGKNLH-LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            A   +   + GK  H L ++++ +  +  L   LVDMY KCG +  A KL    EI   
Sbjct: 222 QACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFE--EISYR 279

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           DVV+W+ +++G+ ++    E+  +F +M+  ++   ++  + ++         +C+S+G+
Sbjct: 280 DVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIV--------LACSSLGS 331

Query: 320 LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  VH Y+ +N + +D                I  AY +F +I EKNV+ W+++I  
Sbjct: 332 LKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMING 391

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           + M G   +A++LF EM      P+ VTF+++LSACSH G ++EG+      SR Y I P
Sbjct: 392 FGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITP 451

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
             +HY CMVDLLGRAG ++E+ +FI +MP  P  S W +LL ACR H+  +LAE   K L
Sbjct: 452 VEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKL 511

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
              +    G +V+L+NIYA  G  + + + R+K+ + G+ K +G++ IE    ++ F+S 
Sbjct: 512 LPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSE 571

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLI 588
           D F   + +I  + N ++  +++ G                 QE    H E+LA+ FGL+
Sbjct: 572 DRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLL 631

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++ E   IRI  N+R+CGDCH+  K  S +  R+I++RD  RFH  Q G CSC DYW
Sbjct: 632 NSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 180/405 (44%), Gaps = 38/405 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L    + F+ +   ++ SWNT+++ ++    + + L L  +M  EG   D   +V  +
Sbjct: 61  GSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAV 120

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A   L   +  K  H    +  ++    +   L+++Y + G + EA K+    E+   +
Sbjct: 121 KACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVF--EEVPLKN 178

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI--- 317
            V+W  ++ G++  +E      LF  M          ++ G++        ++C ++   
Sbjct: 179 SVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLI--------QACGNVYAG 230

Query: 318 --GALYHGIWVHVYIKKN--------QISIDN-------IELAYDLFSEISEKNVYLWTS 360
             G  +HG+     IKKN        Q S+ +       ++ A  LF EIS ++V +W++
Sbjct: 231 KEGKTFHGLC----IKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSA 286

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +IA +A  G A ++I +F +M      P+ VTF +++ ACS  G + +G        R  
Sbjct: 287 IIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIR-N 345

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            ++  +++Y   +D+  + G +  +      +P   +V  WS+++     H     A + 
Sbjct: 346 GVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVFSWSTMINGFGMHGLCAEALNL 404

Query: 481 FKHLTETDPL-NDGAHVLLANIYAKAGRLDD-MSRIRMKLRDMGL 523
           F  +   + L N    V + +  + +GR+++  S  +   RD G+
Sbjct: 405 FYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGI 449



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 28/262 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L    +LF+++  RDV+ W+ +I+ +   G   E + +  +M A+ V+P+ VT  S
Sbjct: 262 KCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFAS 321

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A + L  L+ G+++H ++  + +++        +DMY KCG I  A ++    +I E
Sbjct: 322 IVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVF--CQIPE 379

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +V  W+T+++G+       EA  LF EM   N +  ++    +L+        +C+  G
Sbjct: 380 KNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLS--------ACSHSG 431

Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
            +  G W H         I  +E  Y                ++     AG   +A+   
Sbjct: 432 RIEEG-WSHFKSMSRDYGITPVEEHY--------------ACMVDLLGRAGKIDEALSFI 476

Query: 379 LEMEETGTKPDQVTFIALLSAC 400
             M    T+P    + ALL AC
Sbjct: 477 NNMP---TEPGASAWGALLGAC 495


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 179/565 (31%), Positives = 304/565 (53%), Gaps = 54/565 (9%)

Query: 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY---TSMGMYREGLGLLSK-M 184
           Y ++  + ++    L    ++F+ + N  +  +NT+IS     T+         L +K +
Sbjct: 182 YCLSHLIKISSKFNLPYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKIL 241

Query: 185 GAEGVSPDEVTMVSLISARTKLRD-LEMGKNLHL----FLEESTMK-ISGSLLNYLVDMY 238
             + + P+  T  SL  A    +     G  LH     FL+      +  SLLN+    Y
Sbjct: 242 TNKNLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNF----Y 297

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM---VERNLISW 295
            K GK+  ++ +  R  I+E D+  W  +++ Y +S+        FD+    +E   +  
Sbjct: 298 AKYGKMCVSRYIFDR--INEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFR 355

Query: 296 TLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISIDN-------------- 339
            + + G+   +        +C+++GA+  G WVH ++ +N+I ++               
Sbjct: 356 DMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCG 415

Query: 340 -IELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
            + LA  +F ++ E  ++ + +T++I  +A+ G+  +A++L+ +M+  G  PD  TF+  
Sbjct: 416 CLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVT 475

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
           + ACSH GLV+EG +       V+ ++PK++HYGC++DLLGRAG L+E+  ++  MP+ P
Sbjct: 476 MFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKP 535

Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
           +  +W SLL A R H N+ + E A   L E +P   G +VLL+N+YA  GR++D+ R+R 
Sbjct: 536 NAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRK 595

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ 576
            ++  G+ K  G+SL+E  G +H+F +GD  +P S+EIYL + EI   L++ G +  + +
Sbjct: 596 LMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSE 655

Query: 577 ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                           H ERLA+AF LI++     IRI+ NLR+CGDCH+F K+ S  Y+
Sbjct: 656 ALFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYH 715

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           REI++RD  RFH F+ G CSC DYW
Sbjct: 716 REIIVRDRNRFHHFKDGSCSCLDYW 740


>gi|346703119|emb|CBX25218.1| hypothetical_protein [Oryza brachyantha]
          Length = 596

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 161/450 (35%), Positives = 253/450 (56%), Gaps = 52/450 (11%)

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK--SNERDEARRLFDEM---- 287
           L+D++ +CG+I   +++  R  I   D+  W  L+S Y++  S+  D    LF  M    
Sbjct: 161 LLDVFTRCGRIASCRRVFDR--IACPDLPAWNALLSAYMRCASSAADAILELFSRMISLG 218

Query: 288 -VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI------ 340
            V  N I+   +I             +C  +GAL HG+W H Y+ K Q++I+ I      
Sbjct: 219 TVRPNEITLVAVIG------------ACGELGALGHGVWAHTYLVKRQLAINRIVTTALV 266

Query: 341 ---------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                    +LA  +F+  S+++   + +++   A  GH + A+DLF  M  +G   D V
Sbjct: 267 EMYAGCGRLDLAEHVFATASDRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGV 326

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           T +++L +C+H  LVDEG ++  K    + I+P+++HYGC+VD+L RAG L+++   I  
Sbjct: 327 TILSVLCSCAHAELVDEGLEYFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHE 386

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           MPI P+ +I+ SL+RAC  H N++L E     L + DP + G HVL+AN+YA+  R ++ 
Sbjct: 387 MPIVPNAAIYRSLIRACDIHGNLELGERMITELRQHDPDDSGNHVLIANLYARMNRWEEA 446

Query: 512 SRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ 571
            + R +++ MG+ K  G SL++  G +H+F  GD  +P S+EIY M+ EIE  L + G +
Sbjct: 447 KKTRKEMKSMGIDKSPGSSLLDMNGVLHEFLVGDKTHPASKEIYTMVEEIEARLSEHGHR 506

Query: 572 ETSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
            ++                  H ERLA+ F LI++   T IRI+ NLR+C DCH   K+ 
Sbjct: 507 SSTTSVLFDVEEEDKADTLTYHSERLAIPFALIASDPGTPIRIIKNLRVCADCHESAKLV 566

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S+VY REIV+RD  RFH F+ G+CSC D+W
Sbjct: 567 SRVYGREIVMRDRTRFHHFREGECSCGDFW 596



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 21/147 (14%)

Query: 127 YLYLVTRTVLLNK------------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
           + YLV R + +N+            CG+L     +F    +RD   +N M+    + G  
Sbjct: 247 HTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEHVFATASDRDTRCYNAMLQGLAAHGHG 306

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLI--SARTKLRDLEMGKNLHLFLE-ESTMKISGSLL 231
           R  L L  +M   GV  D VT++S++   A  +L D    + L  F + E    I   + 
Sbjct: 307 RAALDLFDRMRGSGVPVDGVTILSVLCSCAHAELVD----EGLEYFDKMEIEFGIEPRIE 362

Query: 232 NY--LVDMYFKCGKIGEAQKLLGRYEI 256
           +Y  +VDM  + G++ +A+KL+    I
Sbjct: 363 HYGCVVDMLSRAGRLDDAEKLIHEMPI 389


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 212/712 (29%), Positives = 344/712 (48%), Gaps = 106/712 (14%)

Query: 36   NVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT----GDLGY 91
            NV P S  ++ V  +CS +    R+   +    L R+  + T     LV      G +  
Sbjct: 428  NVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTL-RNGDLRTYTNNALVTMYARLGRVND 486

Query: 92   AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL----------VTRTVLLNKCG 141
            A+ +    D  ++  WN++I +   N   +E   +Y+YL          VT   +L  C 
Sbjct: 487  AKALFGVFDGKDLVSWNTVISSLSQNDRFEEAL-MYVYLMIVDGVRPDGVTLASVLPACS 545

Query: 142  KLKEV--------------------------------CQ-------LFDKLPNRDVISWN 162
            +L+ +                                C+       +FD +  R V  WN
Sbjct: 546  QLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWN 605

Query: 163  TMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
             +++ Y       + L L  +M +E    P+  T  S++ A  + +     + +H ++ +
Sbjct: 606  ALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVK 665

Query: 222  STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
                    + N L+DMY + G++  ++ + GR  +++ D+V W T+++G +     D+A 
Sbjct: 666  RGFGKDKYVQNALMDMYSRMGRVEISKTIFGR--MNKRDIVSWNTMITGCIVCGRYDDAL 723

Query: 282  RLFDEMVERNLISWT-LMISGMLNQDAEFKYKS---------CASIGALYHGIWVHVYIK 331
             L  EM  R     +   +    +    FK  S         CA++ AL  G  +H Y  
Sbjct: 724  NLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAV 783

Query: 332  KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            K ++++D                + LA  +F ++  +NV  W  +I AY M G  ++A++
Sbjct: 784  KQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALE 843

Query: 377  LFLEMEETG------TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
            LF  M   G       +P++VT+IA+ +ACSH G+VDEG          + ++P+  HY 
Sbjct: 844  LFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYA 903

Query: 431  CMVDLLGRAGHLEESANFITSMPIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
            C+VDLLGR+G ++E+   I +MP   + V  WSSLL ACR HQ+V+  E A KHL   +P
Sbjct: 904  CLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEP 963

Query: 490  LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
                 +VL++NIY+ AG  D    +R K+++MG++K+ G S IE G  VHKF SGD  +P
Sbjct: 964  NVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHP 1023

Query: 550  HSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEK 593
             S+E++  L  +   ++++G                +ET L  H ERLA+AFGL++T   
Sbjct: 1024 QSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPG 1083

Query: 594  TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            TTIR+  NLR+C DCH   K+ S++ +REI++RD  RFH F  G CSC DYW
Sbjct: 1084 TTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 162/363 (44%), Gaps = 55/363 (15%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG L    Q+FD +P+RD +SWN+MI+       +   L L   M +E V P   T
Sbjct: 376 MYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFT 435

Query: 196 MVSLISARTKLR-DLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           +VS+  A + +R  + +GK +H + L    ++   +  N LV MY + G++ +A+ L G 
Sbjct: 436 LVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTN--NALVTMYARLGRVNDAKALFGV 493

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
           +  D  D+V W T++S   +++  +EA      M+   +    + ++ +L         +
Sbjct: 494 F--DGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVL--------PA 543

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNVYL 357
           C+ +  L  G  +H Y  +N   I+N  +   L                F  +  + V +
Sbjct: 544 CSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAV 603

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACS-----------HGGL 405
           W +++A YA      +A+ LF+EM  E+   P+  TF ++L AC            HG +
Sbjct: 604 WNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYI 663

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           V  G+    K   V N          ++D+  R G +E S      M    D+  W++++
Sbjct: 664 VKRGF---GKDKYVQN---------ALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMI 710

Query: 466 RAC 468
             C
Sbjct: 711 TGC 713



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 113/263 (42%), Gaps = 27/263 (10%)

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           R    W  ++   T    +R+ +   + M A    PD     +++ A   + DL +GK +
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 216 --HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
             H+F        S ++ N LV+MY KCG +  A+++    +I + D V W ++++   +
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFD--DIPDRDHVSWNSMIATLCR 410

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI-GALYHGIWVHVYIKK 332
             E + +  LF  M+  N+   +  +  + +        +C+ + G +  G  VH Y  +
Sbjct: 411 FEEWELSLHLFRLMLSENVDPTSFTLVSVAH--------ACSHVRGGVRLGKQVHAYTLR 462

Query: 333 NQ--------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           N                 +  +  A  LF     K++  W +VI++ +     ++A+   
Sbjct: 463 NGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYV 522

Query: 379 LEMEETGTKPDQVTFIALLSACS 401
             M   G +PD VT  ++L ACS
Sbjct: 523 YLMIVDGVRPDGVTLASVLPACS 545


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 172/442 (38%), Positives = 252/442 (57%), Gaps = 56/442 (12%)

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE---------- 308
            D +L TTL+  Y K  E D A ++FDEMV+R++ SW  +ISG                 
Sbjct: 138 ADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRM 197

Query: 309 ----FK---------YKSCASIGALYHGIWVHVYIKKNQISIDN---------------I 340
               FK           +CA +G    G  +H YIK  +  ++                +
Sbjct: 198 EIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFV 257

Query: 341 ELAYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           + AY +F  +S  K++  W ++I A+AM G   KA++LF +M+++G  PD V+++A+L A
Sbjct: 258 DKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCA 317

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           C+HGGLV+EG+   +       +KP ++HYG +VDLLGRAG L E+ + + SMP  PD+ 
Sbjct: 318 CNHGGLVEEGFRLFNSMENC-GVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIV 376

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           +W +LL A R H+NV++AE   + L E    + G  VLL+N+YA   R  D+ R+R  ++
Sbjct: 377 LWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMK 436

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL--- 575
           +  +KK  G S IE  G +HKF + D  +    EIY  L+EI   +++ G + ETS    
Sbjct: 437 NRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLH 496

Query: 576 ------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
                        H E+LAVAFGLISTSE T I+++ NLRICGDCH  +K+ S++Y+REI
Sbjct: 497 DIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREI 556

Query: 624 VIRDNGRFHRFQGGQCSCRDYW 645
           ++RD  RFHRF+ G CSCRDYW
Sbjct: 557 IVRDRVRFHRFKEGFCSCRDYW 578


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 178/523 (34%), Positives = 278/523 (53%), Gaps = 62/523 (11%)

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
           ++M   G+  D  T+  ++ +   L  + MG+ +H       ++    +   L+DMY KC
Sbjct: 96  ARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKC 155

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           G IG+A+KL  +  +   D+  W  L++GY+K  E   A  LF+ M  RN++SWT MISG
Sbjct: 156 GVIGDARKLFDKMIVR--DMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISG 213

Query: 302 ----------------MLNQDAEFK---------YKSCASIGALYHGIWVHVYIKKNQIS 336
                           ML   +E K           +CA   AL  G  +H +     + 
Sbjct: 214 YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 273

Query: 337 IDN------------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           +++                      +D+ ++ + KN+  W ++I AYA  G   +A+ +F
Sbjct: 274 LNSSVQTALAGMYAKCYSLVEARCCFDMIAQ-NGKNLIAWNTMITAYASHGCGVEAVSIF 332

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
             M   G +PD VTF+ LLS CSH GL+D G +  +    +++++P+++HY C+VDLLGR
Sbjct: 333 ENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGR 392

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
           AG L E+   I+ MP+    S+W +LL ACR H+N+++AE A + L   +P N G +VLL
Sbjct: 393 AGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLL 452

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
           +N+YA+AG  +++ ++R  L+  G+KK  G S IE  G  H F   D  +P ++EIY  L
Sbjct: 453 SNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFL 512

Query: 559 NEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTSEKTTIRIVNNL 602
             +   ++  G + +TS                 H E+LA+AFGL++T     +R+  NL
Sbjct: 513 EALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNL 572

Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           RICGDCH+  K  S++Y REI++RD  RFH F+ G CSC DYW
Sbjct: 573 RICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 122/264 (46%), Gaps = 32/264 (12%)

Query: 47  VERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V +SC+ +        +H   +   L  D  +   + +  V  G +G A+++  +    +
Sbjct: 113 VLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRD 172

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           +  WN+     LI GY +E                  G++     LF+++ +R+++SW  
Sbjct: 173 MASWNA-----LIAGYMKE------------------GEIGVAEDLFERMEHRNIVSWTA 209

Query: 164 MISCYTSMGMYREGLGLLSKMGAEG--VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           MIS YT  G   + LGL  +M  +G  + P+ VT+VS++ A  +   LE G+ +H F   
Sbjct: 210 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 269

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
             + ++ S+   L  MY KC  + EA+        +  +++ W T+++ Y       EA 
Sbjct: 270 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 329

Query: 282 RLFDEM----VERNLISWTLMISG 301
            +F+ M    V+ + +++  ++SG
Sbjct: 330 SIFENMLRAGVQPDAVTFMGLLSG 353



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 12/155 (7%)

Query: 139 KCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           KC  L E    FD +    +++I+WNTMI+ Y S G   E + +   M   GV PD VT 
Sbjct: 288 KCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTF 347

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRY 254
           + L+S  +    ++ G N H     +   +   + +Y  +VD+  + G++ EA++L+ + 
Sbjct: 348 MGLLSGCSHSGLIDAGLN-HFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQM 406

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDE-----ARRLF 284
            + +    +W  L++   +S+   E     ARRLF
Sbjct: 407 PM-QAGPSVWGALLAA-CRSHRNLEIAELAARRLF 439


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 297/554 (53%), Gaps = 51/554 (9%)

Query: 128 LYLVTRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           ++L TR V +  +CG L +   + D++P R V+SW TMIS Y+    + E L L  KM  
Sbjct: 45  VFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR 104

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G  P+E T+ +++++ +  + +  GK +H  L ++  +    + + L+DMY K   I E
Sbjct: 105 AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQE 164

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMISGM 302
           A+++     + E DVV  T ++SGY +    +EA    R+L+ E ++ N +++T +++ +
Sbjct: 165 ARRVFD--TLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTAL 222

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ----ISIDNI---------ELAYD--LF 347
                       + + +L +G  VH  I + +    +++ N          +L Y   +F
Sbjct: 223 ------------SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVF 270

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             + E++V  W +++  Y   G   + I LF ++ +   KPD VT +A+LS CSHGGLVD
Sbjct: 271 DNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGGLVD 329

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG D      +  +      HYGC++DLLGR+G LE++ N I +MP     SIW SLL A
Sbjct: 330 EGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGA 389

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H NV + E   + L E +P N G +V+L+NIYA AG   D+ ++R  + +  + K+ 
Sbjct: 390 CRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEP 449

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
           G S I     +H F S + F+P  ++I   + EI + ++  G                 +
Sbjct: 450 GQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKE 509

Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
              L H E+LA+ FGL++T    TIR++ NLRIC DCH+F K  S+VY REI +RD  RF
Sbjct: 510 RMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRF 569

Query: 632 HRFQGGQCSCRDYW 645
           H    G C+C DYW
Sbjct: 570 HLLTHGNCTCGDYW 583



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 133/285 (46%), Gaps = 35/285 (12%)

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           I+A  + R L  G+ +H  +  +  + +  L   LV MY +CG + +A+ +L R  + E 
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR--MPER 74

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
            VV WTT++SGY ++    EA  LF +M+    I     ++ +L         SC+   +
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLT--------SCSGPQS 126

Query: 320 LYHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTSVIAA 364
           +Y G  VH  + K                    +NI+ A  +F  + E++V   T++I+ 
Sbjct: 127 IYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISG 186

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           YA  G  ++A+DLF ++   G + + VTF  L++A S    +D G     K+     ++ 
Sbjct: 187 YAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYG-----KQVHALILRK 241

Query: 425 KMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           ++  +      ++D+  + G L  S     +M +   V  W+++L
Sbjct: 242 ELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM-LERSVVSWNAML 285


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 184/549 (33%), Positives = 278/549 (50%), Gaps = 53/549 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG L+    +F   P R+V SW  M++ +   G Y + L LL  M  EG+SP+ +T
Sbjct: 101 MYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSIT 160

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            + L+ A   L  L+ G+ LH  +          + N L++MY KC  + +A  +     
Sbjct: 161 FIELLGAVAALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVF--ES 218

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKY 311
           +    V+ WT LV+ Y  +    +A ++F  M    VE   +++  ++            
Sbjct: 219 LTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVD----------- 267

Query: 312 KSCASIGALYHGIWVHVYI---KKNQISIDNIEL-----------AYDLFSEISEKNVYL 357
             CA I     G  VH  I    +  + + N  +           A  +F  +  K++  
Sbjct: 268 -VCADIAVFGIGREVHGVIDARSEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIIT 326

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEET-----GTKPDQVTFIALLSACSHGGLVDEGYDF 412
           W S+IA Y   G+  +A++++  M+E+     G   D +TFI +L ACSH GLV +    
Sbjct: 327 WNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKL 386

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
            S     Y  KP     GC++DLLGRAG L+E+  FI SMP  PD +IW+ LL AC  H 
Sbjct: 387 YSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHA 446

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           +V+ A  A   +    P + G++V L+N+YA A R DDM+R+R  +   G+ K  G S I
Sbjct: 447 DVERAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSI 506

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQ 576
           E GG +H+F +GD  +P   EIY  L  IE  ++++G                 ++    
Sbjct: 507 EIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCF 566

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H ERLA+AFG+IS+   T +RI+ NLR+C DCHS  K+ S+   R+I++RD  RFH F+ 
Sbjct: 567 HSERLAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRN 626

Query: 637 GQCSCRDYW 645
           G CSC DYW
Sbjct: 627 GSCSCEDYW 635



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 122/269 (45%), Gaps = 28/269 (10%)

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           GK +H  +     K S  L N LV+MY KCG +  A+ +   +     +V  WT +V+ +
Sbjct: 76  GKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVF--HITPRRNVFSWTIMVAAF 133

Query: 272 VKSNERDEARRLFD----EMVERNLISWTLMISGML-------NQDAEFKYKSCASIGAL 320
             +    +A  L +    E +  N I++  ++  +         +    +   C  +  +
Sbjct: 134 AHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLADI 193

Query: 321 Y-HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           +     +++Y K   ++      A  +F  ++ ++V  WT+++AAYA+ G  + A+ +FL
Sbjct: 194 FVANCLINMYAKCRSLAD-----ACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFL 248

Query: 380 EMEETGTKPDQVTFIALLSACSH---GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
            M   G +P +VTF+ ++  C+     G+  E +  +  +S     +  +     ++++ 
Sbjct: 249 LMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDARS-----EANVCVGNALINMY 303

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLL 465
           G+    +E+     +M    D+  W+S++
Sbjct: 304 GKCASPDEARKVFDAMQ-RKDIITWNSMI 331


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 178/501 (35%), Positives = 274/501 (54%), Gaps = 39/501 (7%)

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           EG  +  +M  +G+  D V++  +I    ++  L  G+ +H  +     +    LL  L+
Sbjct: 7   EGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTNLM 66

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           D+Y  C K  EA K+    E+ + D + W  L+S Y+++    +   +FD M+   L   
Sbjct: 67  DLYSLCDKGSEACKVFD--EMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCE 124

Query: 296 TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS---------------IDNI 340
              ++ +L        ++CA++GAL  G  VH +I +                     N+
Sbjct: 125 PDDVTCLL------LLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNL 178

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           + A+ +F  +  KNV  W+++I+  AM G+ ++AI  F EM + G  PD +TF  +LSAC
Sbjct: 179 DKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSAC 238

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           S+ GLVD+G    ++ S+ + I P + HYGCMVDLLGRAG L ++   I SM + PD +I
Sbjct: 239 SNCGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTI 298

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           W +LL ACR H+NV L EH  +HL E      G +VLL N+Y+       ++ +R  +++
Sbjct: 299 WRTLLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKE 358

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ--- 576
            G++     S IE  G VH+F   D+ +P  +EIY ML+EI   L+  G + E + +   
Sbjct: 359 KGIQTTPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEITSELPN 418

Query: 577 ------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                       H E+LA+AFG+++T   TTIRI  NLRIC DCH+F K+ S VYNR+++
Sbjct: 419 LDAEEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQVI 478

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           I D+ RFH F+GG CSC DYW
Sbjct: 479 ITDHTRFHHFRGGHCSCNDYW 499



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 32/276 (11%)

Query: 128 LYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--G 185
           L L     L + C K  E C++FD++  RD I+WN +ISCY      R+ L +   M  G
Sbjct: 60  LLLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSG 119

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
             G  PD+VT + L+ A   L  LE G+ +H  + E     + +L N L+ MY    + G
Sbjct: 120 ELGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMY---SQFG 176

Query: 246 EAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
              K  G ++ +   +VV W+ ++SG   +    EA   F+EM++  ++   L  +G+L+
Sbjct: 177 NLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLS 236

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364
                   +C++ G +  G+ +   + K              F  +   N++ +  ++  
Sbjct: 237 --------ACSNCGLVDKGMIIFARMSKE-------------FGIVP--NIHHYGCMVDL 273

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
              AG   +A  L + M     KPD   +  LL AC
Sbjct: 274 LGRAGQLHQAYQLIMSMR---VKPDSTIWRTLLGAC 306


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 187/553 (33%), Positives = 288/553 (52%), Gaps = 49/553 (8%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVS 198
           C +++   ++FD +  R +  WN MIS Y   G+  + L L  +M    G+ P+  TM S
Sbjct: 346 CRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMAS 405

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A          +++H +  +   K    + N L+DMY + GK+  ++ +    E+  
Sbjct: 406 VMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR- 464

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS----- 313
            D V W T+++GYV S     A  L  EM                 +   +K  +     
Sbjct: 465 -DRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMT 523

Query: 314 ----CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKN 354
               CA++ A+  G  +H Y  +N ++ D                + L+  +F+E+  KN
Sbjct: 524 VLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKN 583

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEM-EETG----TKPDQVTFIALLSACSHGGLVDEG 409
           V  W  +I A  M G  ++A++LF  M  E G     KP++VTFI + +ACSH GL+ EG
Sbjct: 584 VITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEG 643

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD-VSIWSSLLRAC 468
            +   +    + ++P   HY C+VDLLGRAG LEE+   + +MP   D V  WSSLL AC
Sbjct: 644 LNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGAC 703

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R HQNV+L E A K+L   +P     +VLL+NIY+ AG  +    +R  +R MG+KK+ G
Sbjct: 704 RIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPG 763

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS------------- 574
            S IE    VHKF +GD+ +P SE+++  L  +   ++++G + +TS             
Sbjct: 764 CSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKEN 823

Query: 575 --LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
               H E+LA+AFG+++T   TTIR+  NLR+C DCH+  K  S++  REI++RD  RFH
Sbjct: 824 LLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFH 883

Query: 633 RFQGGQCSCRDYW 645
            F+ G CSC DYW
Sbjct: 884 HFKEGTCSCGDYW 896



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 164/357 (45%), Gaps = 47/357 (13%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG + +VC++FD++ +RD +SWN+ I+       + + L     M  E +     T
Sbjct: 137 MYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFT 196

Query: 196 MVSLISARTKL---RDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           +VS+  A + L     L +GK LH + L     K   +  N L+ MY K G++ +++ L 
Sbjct: 197 LVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTN--NALMAMYAKLGRVDDSKALF 254

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
             + +D  D+V W T++S + +S+   EA   F  MV   +    + I+ +L        
Sbjct: 255 ESF-VDR-DMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVL-------- 304

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDN----------------IELAYDLFSEISEKNV 355
            +C+ +  L  G  +H Y+ +N   I+N                +E    +F  I  + +
Sbjct: 305 PACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRI 364

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
            LW ++I+ YA  G  +KA+ LF+EM +  G  P+  T  +++ AC H        +  S
Sbjct: 365 ELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH-------CEAFS 417

Query: 415 KKSRVYNIKPKMQH------YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            K  ++    K+           ++D+  R G ++ S     SM +   VS W++++
Sbjct: 418 NKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVS-WNTMI 473



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 170/389 (43%), Gaps = 64/389 (16%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G++ +   LF+   +RD++SWNTMIS ++    + E L     M  EGV  D VT+ S
Sbjct: 243 KLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIAS 302

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLL-NYLVDMYFKCGKIGEAQK----LLGR 253
           ++ A + L  L++GK +H ++  +   I  S + + LVDMY  C ++   ++    +LGR
Sbjct: 303 VLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR 362

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--Y 311
                  + LW  ++SGY ++   ++A  LF EM++         ++G+L          
Sbjct: 363 R------IELWNAMISGYARNGLDEKALILFIEMIK---------VAGLLPNTTTMASVM 407

Query: 312 KSCASIGAL-----YHGIWVHVYIKKNQI----------SIDNIELAYDLFSEISEKNVY 356
            +C    A       HG  V +  K+++            +  ++++  +F  +  ++  
Sbjct: 408 PACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRV 467

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGT-----------------KPDQVTFIALLSA 399
            W ++I  Y ++G    A+ L  EM+                     KP+ +T + +L  
Sbjct: 468 SWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPG 527

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIP 455
           C+    + +G     K+   Y I+  +         +VD+  + G L  S      MP  
Sbjct: 528 CAALAAIAKG-----KEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-N 581

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
            +V  W+ L+ AC  H   + A   FK++
Sbjct: 582 KNVITWNVLIMACGMHGKGEEALELFKNM 610



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 126/276 (45%), Gaps = 32/276 (11%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P+R   SW   +   T    +RE +    +M   G  PD     +++ A + L+DL+ G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 214 NLH-LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
            +H   ++      S ++ N LV+MY KCG IG+  K+  R  I + D V W + ++   
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDR--ITDRDQVSWNSFIAALC 170

Query: 273 KSNERDEARRLFDEMVERN--LISWTLMISGMLNQDAEFKYKSCASIGALY--------H 322
           +  + ++A   F  M   N  L S+TL+   +          +C+++G ++        H
Sbjct: 171 RFEKWEQALEAFRAMQMENMELSSFTLVSVAL----------ACSNLGVMHGLRLGKQLH 220

Query: 323 GIWVHVYIKKN---------QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           G  + V  +K             +  ++ +  LF    ++++  W ++I++++ +    +
Sbjct: 221 GYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSE 280

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           A+  F  M   G + D VT  ++L ACSH   +D G
Sbjct: 281 ALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVG 316


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 181/530 (34%), Positives = 289/530 (54%), Gaps = 42/530 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            LFD +   D++ +N++   Y+      E   L  ++  + + PD  T  SL+ A    +
Sbjct: 86  HLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAK 145

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            LE G+ LH    +  +  +  +   L++MY +C  +  A+ +  R  I E  VV +  +
Sbjct: 146 ALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDR--IVEPCVVCYNAM 203

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++GY + N  +EA  LF EM  +NL    + +  +L+        SCA +G+L  G W+H
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLS--------SCALLGSLDLGKWIH 255

Query: 328 VYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            Y KK         N   ID      +++ A  +F  +  K+   W+++I AYA  G A+
Sbjct: 256 EYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAE 315

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
            ++ +F  M     +PD++TF+ LL+ACSH GLV+EG ++ S     + I P ++HYG M
Sbjct: 316 NSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSM 375

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAGHLE++  FI  +PI P   +W  LL AC  H N++LAE   + + E D  + 
Sbjct: 376 VDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHG 435

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G +V+L+N+YA+  + + +  +R  ++D    K  G S IE    VH+F SGD     + 
Sbjct: 436 GDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATT 495

Query: 553 EIYLMLNEIEMTLQQQG-LQETSL----------------QHRERLAVAFGLISTSEKTT 595
           +++  L+E+   L+  G + +TS+                 H E+LA+AFGL++T   TT
Sbjct: 496 KLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTT 555

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IR+V NLR+C DCHS  K+ S ++ R++V+RD  RFH F+ G+CSCRD+W
Sbjct: 556 IRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 181/563 (32%), Positives = 289/563 (51%), Gaps = 68/563 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +     +F+++  +  + WN MIS Y   GM  +   L  +M +E V  DE T  S++
Sbjct: 246 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 305

Query: 201 SARTKLRDLEMGKNLHL--------FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           SA         GK++H         F+ E+ + ++    N LV +Y K GKI  A+++  
Sbjct: 306 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN----NALVTLYSKGGKIVIAKRIFD 361

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDA- 307
              +   DVV W T++SGY+ S   D+A  +F  M  +N +SW +M+SG     L++DA 
Sbjct: 362 TMNLK--DVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDAL 419

Query: 308 --------------EFKYK----SCASIGALYHGIWVHVYIKKNQISIDN---------- 339
                         ++ Y     +C  +GAL HG  +H ++ +      N          
Sbjct: 420 KLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMY 479

Query: 340 -----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                +  A  +F  +   +   W ++I+A    GH ++A++LF +M   G  PD+++F+
Sbjct: 480 AKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFL 539

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +L+AC+H GLVDEG+ +     R + I P   HY  ++DLLGR+G + E+ + I +MP 
Sbjct: 540 TILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPF 599

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
            P  SIW ++L  CR + +++   +A   L    P +DG ++LL+N Y+ AGR  D +R+
Sbjct: 600 EPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARV 659

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS 574
           R  +RD G+KK+ G S IE G  +H F  GD  +P ++E+Y  L  I   +++ G    +
Sbjct: 660 RKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDT 719

Query: 575 ----------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                             H E+LAV FGL+      T+ ++ NLRICGDCH+ M   S+ 
Sbjct: 720 KFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKA 779

Query: 619 YNREIVIRDNGRFHRFQGGQCSC 641
             REIV+RD  RFH F+ G+CSC
Sbjct: 780 VGREIVVRDVRRFHHFKDGECSC 802



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 162/353 (45%), Gaps = 57/353 (16%)

Query: 141 GKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLL-SKMGAEGVSPDEVTMV 197
           G+L++    FD +P   RD +  N M+S +    +    + +  + +G+  + PD+ +  
Sbjct: 106 GRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFT 165

Query: 198 SLISARTKLRDLEMG--KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG---EAQKLLG 252
           +LISA  ++ +L       LH  + +S      S+ N L+ +Y KC       +A+K+L 
Sbjct: 166 ALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLD 225

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DA- 307
             E+ + D + WTT+V GYV+  + + AR +F+E+  +  + W  MISG +      DA 
Sbjct: 226 --EMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAF 283

Query: 308 --------------EFKYKS----CASIGALYHGIWVHV--------YIKKNQISIDN-- 339
                         EF + S    CA+ G   HG  VH         ++ +  + ++N  
Sbjct: 284 ELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNAL 343

Query: 340 ---------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                    I +A  +F  ++ K+V  W ++++ Y  +G   KA+++F  M       + 
Sbjct: 344 VTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----ND 399

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
           ++++ ++S   HGGL ++     ++  R  ++KP    Y   +   G  G L+
Sbjct: 400 LSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTYAGAIAACGELGALK 451



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 36/207 (17%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT------------- 163
           N  P+    +   LVT   L +K GK+    ++FD +  +DV+SWNT             
Sbjct: 330 NFVPEAALPVNNALVT---LYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDK 386

Query: 164 ------------------MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
                             M+S Y   G+  + L L ++M AE V P + T    I+A  +
Sbjct: 387 AVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGE 446

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           L  L+ G+ LH  L +   + S S  N L+ MY KCG + +A+ +     +  +D V W 
Sbjct: 447 LGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVF--LVMPNLDSVSWN 504

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNL 292
            ++S   +     EA  LFD+MV   +
Sbjct: 505 AMISALGQHGHGREALELFDQMVAEGI 531



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +   +F  +PN D +SWN MIS     G  RE L L  +M AEG+ PD ++ ++
Sbjct: 481 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 540

Query: 199 LISARTKLRDLEMGKNLHLFLE-ESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYE 255
           +++A      ++ G   H F   +    IS    +Y  L+D+  + G+IGEA+ L+    
Sbjct: 541 ILTACNHAGLVDEG--FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP 598

Query: 256 IDEVDVVLWTTLVSG 270
            +    + W  ++SG
Sbjct: 599 FEPTPSI-WEAILSG 612


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 185/539 (34%), Positives = 283/539 (52%), Gaps = 51/539 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +K G+L++   +FD++  RD++SWN++I+ Y         L     M   G+ PD +T
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLT 325

Query: 196 MVSLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           +VSL S  ++L D  + ++ L   +    +     + N LV+MY K G +  A  +    
Sbjct: 326 VVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFD-- 383

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE-RNLI----SWTLMISGMLNQDAEF 309
           ++   D + W TLV+GY ++    EA   ++ M E R+ I    +W  +I          
Sbjct: 384 QLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAY------- 436

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKN 354
                + +GAL  G+ +H  + KN + +D                +E A  LF EI    
Sbjct: 437 -----SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDT 491

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              W ++IA+  + G  ++A+ LF +M     K D +TF++LLSACSH GLVDEG     
Sbjct: 492 SVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFD 551

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
              + Y IKP ++HYGCMVDLLGRAG+LE++   + +MPI PD SIW +LL AC+ + N 
Sbjct: 552 IMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNA 611

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           +L   A   L E D  N G +VLL+NIYA   + + + ++R   RD GL+K  G+S +  
Sbjct: 612 ELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVV 671

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHR 578
           G     F +G+  +P   EIY  L  +   ++  G                 ++    H 
Sbjct: 672 GSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHS 731

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
           ERLA+AFG+IST  ++ IRI  NLR+CGDCH+  K  S++  REIV+RD+ RFH F+ G
Sbjct: 732 ERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 128/565 (22%), Positives = 258/565 (45%), Gaps = 88/565 (15%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
           SC +++  +++H+ L+     ++  +ST++    V  GD+  ++       +  I  WNS
Sbjct: 31  SCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNS 90

Query: 110 IIE---------------NQLIN----GYPQEVFAIYLYLVTRTV--------------- 135
           II                NQL +    G+ +  F  +  ++   V               
Sbjct: 91  IISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKM 150

Query: 136 --------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                         L ++ G L    ++F  +P +DV SWN MIS +   G     LG+L
Sbjct: 151 GFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVL 210

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
           ++M  EGV  D +T+ S++    +  D+  G  +HL + +  +     + N L++MY K 
Sbjct: 211 NRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKF 270

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTL 297
           G++ +AQ +  + E+   D+V W ++++ Y ++N+   A R F  M    +  +L++  +
Sbjct: 271 GRLQDAQMVFDQMEVR--DLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLT-VV 327

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIW-----------VHVYIKKNQISIDNIELAYDL 346
            ++ + +Q ++ +  S + +G +    W           V++Y K     +  +  A+ +
Sbjct: 328 SLTSIFSQLSDQRI-SRSILGFVIRREWLDKDVVIGNALVNMYAK-----LGYMNCAHTV 381

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGL 405
           F ++  K+   W +++  Y   G A +AID +  MEE   T P+Q T+++++ A SH G 
Sbjct: 382 FDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGA 441

Query: 406 VDEGYDFLSK--KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI-WS 462
           + +G    +K  K+ +Y     +    C++DL G+ G LE++ +      IP D S+ W+
Sbjct: 442 LQQGMKIHAKLIKNSLY---LDVFVATCLIDLYGKCGRLEDAMSLFYE--IPRDTSVPWN 496

Query: 463 SLLRACRCHQNVKLAEHAFKH-LTETDPLNDGAHVLLANIYAKAGRLDDMSR-IRMKLRD 520
           +++ +   H   + A   FK  L E    +    V L +  + +G +D+  +   +  ++
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 521 MGLKKQLGY-----SLIEQGGFVHK 540
            G+K  L +      L+ + G++ K
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEK 581



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 77/283 (27%)

Query: 303 LNQDAEFK--YKSCASIGAL--YHGIWVHVYIKKNQISID-----------NIELAYDLF 347
           L++DA+F   + SC ++ A    H + + V+ K   I +            +I L+   F
Sbjct: 19  LHKDADFNALFNSCVNVNATKKLHALLL-VFGKSQNIVLSTKLINLYVTHGDISLSRSTF 77

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAID----LFLEMEETGTKPDQVTFIALLSACSHG 403
             I +KN++ W S+I+AY   G   +A++    LF        +PD  TF  +L AC   
Sbjct: 78  DYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV-- 135

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
            LVD       KK      K   +        +V L  R G L+ +      MP+  DV 
Sbjct: 136 SLVD------GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPV-KDVG 188

Query: 460 IWSSLLRA-CR--------------------------------CHQN------VKLAEHA 480
            W++++   C+                                C Q+      V +  H 
Sbjct: 189 SWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHV 248

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI--RMKLRDM 521
            KH  ++D     A   L N+Y+K GRL D   +  +M++RD+
Sbjct: 249 LKHGLDSDVFVSNA---LINMYSKFGRLQDAQMVFDQMEVRDL 288


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 169/421 (40%), Positives = 247/421 (58%), Gaps = 33/421 (7%)

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF--KYKSCA 315
           E D  +  +LV  YVK  E     +LFDE  +RN     L+ +G+   D        +C 
Sbjct: 170 EFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVSALLACT 229

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            IGAL  G  +H Y+  N   ++               NI+ A  +F E   K++  W+ 
Sbjct: 230 KIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSV 289

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I  +A+ G   +A+  F++M+  G  PD+V F+A+L+ACSH G VD+G +F       Y
Sbjct: 290 MIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDY 349

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           +I+P M+HY  +VDLLGRAG L+E+ +FI SMPI PD  IW +L  ACR H+N+++AE  
Sbjct: 350 SIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELT 409

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L + +P + G++V L+N+YA  GR +D+ R+R  +++ G++K  G+S IE  G VH 
Sbjct: 410 AEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHS 469

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRERLAVA 584
           F +GD  +  +EEI L L EI  + +Q+G + ET+                 H E+LA+A
Sbjct: 470 FVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALA 529

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLIST+  +TIRIV NLR+CGDCHS MK  S++  REI++RD  RFH F+ G CSC DY
Sbjct: 530 FGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDY 589

Query: 645 W 645
           W
Sbjct: 590 W 590



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 101/218 (46%), Gaps = 18/218 (8%)

Query: 336 SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
           S+ +++ A  +F      N++++ ++I   A     + ++  F+ M     +PD++T   
Sbjct: 84  SLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPF 143

Query: 396 LLSA-----------CSHGGLVDEGYDFLS-KKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
           +L +           C HGG++  G +F S  +  + ++  K+   G  + L   +    
Sbjct: 144 VLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRN 203

Query: 444 ESANFITSMPI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANI 501
           ++ + +    + P D+++ S+LL AC     +++ E    +L+     LN G    L ++
Sbjct: 204 KAESILLWNGVRPNDLTVVSALL-ACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDM 262

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           YAK G +   SR+ ++ +    K  L +S++  G  +H
Sbjct: 263 YAKCGNIKSASRVFVETKG---KDLLTWSVMIWGWAIH 297


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 282/541 (52%), Gaps = 41/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG+++    LF ++  +D+IS N MIS +T  G   + + L  ++ + G      T
Sbjct: 75  LFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSST 134

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V LI   +      +   +H F  +  +    S+   L  +Y +  ++  A++L    E
Sbjct: 135 IVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFD--E 192

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
             E  +  W  ++SG  ++   D A  LF  M + N+    + ++ +L+        +CA
Sbjct: 193 SAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILS--------ACA 244

Query: 316 SIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNVYLWTS 360
            IGAL  G WVH  IK N+           ID      +I +A +LF  + EKN   W +
Sbjct: 245 QIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNA 304

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+ Y + GH Q+A+ LF +M  +  KP  +TF+++L ACSH GLV EG          +
Sbjct: 305 MISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDF 364

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
             +P  +HY CMVD+LGRAG L+++  FI +MP+ P   +W +LL AC  H++  LA  A
Sbjct: 365 GFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVA 424

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L E DP N G +VL++NIY+   +    + +R   +   L K  G +LIE G   H 
Sbjct: 425 SEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHV 484

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVA 584
           FTSGD  +P S+ IY  L+++   + + G Q  +                  H E+LA+A
Sbjct: 485 FTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIA 544

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLIST     IRI+ NLR+C DCH++ K  S++  R IV+RD  RFH F+ G CSC DY
Sbjct: 545 FGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDY 604

Query: 645 W 645
           W
Sbjct: 605 W 605



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 8/146 (5%)

Query: 267 LVSGYVKSNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           ++SG+VK++  +++ R+F +MV     R  ++  + +   + +  E K        A+  
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 323 GIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           G + HV +    IS+      +E+A  LF EI +K++    ++I+ +   G  + ++ LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 379 LEMEETGTKPDQVTFIALLSACSHGG 404
            E+  +G +    T + L+   S  G
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFG 146


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 194/623 (31%), Positives = 313/623 (50%), Gaps = 73/623 (11%)

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL-----VTRTVLLN-- 138
            G +  A+++  +  E  +  W +++   +  G   E   ++  +     V+ TV+L   
Sbjct: 173 NGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGL 232

Query: 139 -KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            + G++ E C+LFD +P +DV++   MI  Y  +G   E   L  +M    V    V+  
Sbjct: 233 LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNV----VSWT 288

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++I+   + + +++ + L   + E   ++S + +   +  Y  CG++ EA +L     I 
Sbjct: 289 TMITGYVQNQQVDIARKLFEVMPEKN-EVSWTAM---LKGYTNCGRLDEASELFNAMPIK 344

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------- 310
              VV    ++  + ++ E  +AR++FD+M E++  +W+ MI     +  E         
Sbjct: 345 --SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRM 402

Query: 311 ----------------YKSCASIGALYHGIWVHVYIKKNQISID---------------N 339
                              CA +  L HG  +H  + ++Q  +D               N
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN 462

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           +  A  +F   + K+V +W S+I  YA  G   +A+ +F +M  +G  PD VTF+ +LSA
Sbjct: 463 LAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSA 522

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           CS+ G V +G +  +     Y ++ K++HY CMVDLLGRAG L E+ + I  MP+  D  
Sbjct: 523 CSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAI 582

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           IW +LL ACR H  + LAE A K L   +P N G  +LL+NIYA  GR DD++ +R  +R
Sbjct: 583 IWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMR 642

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIF-NPHSEEIYLMLNEIEMTLQQQGL-------- 570
           D  + K  G S I     VHKFT GD   +P   EI  +L  +   L++ G         
Sbjct: 643 DRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVL 702

Query: 571 ----QETSLQ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
               +E  +Q    H E+LAVA+GL+       IR++ NLR+CGDCH+ +K+ ++V  RE
Sbjct: 703 HDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGRE 762

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           I++RD  RFH F+ G CSCRDYW
Sbjct: 763 IILRDANRFHHFKDGSCSCRDYW 785



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 184/396 (46%), Gaps = 39/396 (9%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL---------L 137
           G +  A+ +  +  +  I  WNSI+     N  PQE   ++  +  R  +         +
Sbjct: 112 GQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYI 171

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           N  G + E  ++FD++P R+V+SW  M+  Y   GM  E   L  +M  + V    V + 
Sbjct: 172 NN-GMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLG 230

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            L+    + R  E  +   +  E+  +  +      ++  Y + G++ EA+ L    E+ 
Sbjct: 231 GLLQ---EGRIDEACRLFDMMPEKDVVTRTN-----MIGGYCQVGRLVEARMLFD--EMP 280

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
             +VV WTT+++GYV++ + D AR+LF+ M E+N +SWT M+ G         Y +C  +
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKG---------YTNCGRL 331

Query: 318 ---GALYHGIWVHVYIKKNQISI-----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
                L++ + +   +  N + +       +  A  +F ++ EK+   W+++I  Y   G
Sbjct: 332 DEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKG 391

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
               A++LF  M+  G +P+  + I++LS C+    +D G +  ++  R       +   
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS-QFDLDVYVA 450

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             ++ +  + G+L ++        +  DV +W+S++
Sbjct: 451 SVLLSMYIKCGNLAKAKQVFDRFAV-KDVVMWNSII 485



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 67/347 (19%)

Query: 129 YLVTRTVLL---NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           ++++R  L+   ++ G++++   +FD++ ++++ISWN++++ Y      +E   +  KM 
Sbjct: 97  FIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS 156

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
                                             E +T+  +G     LV  Y   G I 
Sbjct: 157 ----------------------------------ERNTISWNG-----LVSGYINNGMIN 177

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
           EA+++  R  + E +VV WT +V GYVK     EA  LF +M E+N++SWT+M+ G+L Q
Sbjct: 178 EAREVFDR--MPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL-Q 234

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQIS----IDNIELAYDLFSEISEKNVYLWTSV 361
           +     ++C     +       V  + N I     +  +  A  LF E+  +NV  WT++
Sbjct: 235 EGRID-EACRLFDMMPEK---DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTM 290

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I  Y        A  LF  M E     ++V++ A+L   ++ G +DE        S ++N
Sbjct: 291 ITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEA-------SELFN 339

Query: 422 IKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
             P      C  M+   G+ G + ++      M    D   WS++++
Sbjct: 340 AMPIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMIK 385



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 94/235 (40%), Gaps = 60/235 (25%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P  + V+ V    +++D    IH+ L+ +    D  +++ +    +  G+L  A+Q+  +
Sbjct: 413 PSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDR 472

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
               ++ +WNSI     I GY Q                                     
Sbjct: 473 FAVKDVVMWNSI-----ITGYAQH------------------------------------ 491

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
                        G+  E L +   M   G+ PD+VT V ++SA +   +++ G  L +F
Sbjct: 492 -------------GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKG--LEIF 536

Query: 219 LE-ESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
              E+  ++   + +Y  +VD+  + GK+ EA  L+ +  + E D ++W  L+  
Sbjct: 537 NSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPM-EADAIIWGALLGA 590


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 187/547 (34%), Positives = 296/547 (54%), Gaps = 51/547 (9%)

Query: 139 KCGKLKEVCQLFDKLPNR-DVISWNTMISCY---TSMGMYR----EGLGLLSKMGAEGVS 190
           K  +L    Q+FD++P   DV+ +NT++  Y   ++ G  R    E   +  +M  EGV+
Sbjct: 80  KPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVA 139

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD  T VSL+ A    R  E G+  H    +        +L  L++MY +CG    A+ +
Sbjct: 140 PDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTM 199

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
            GR  +D   VV +  +++  V+S+   EA  LF EM  + L   ++ +  +L+      
Sbjct: 200 FGR--VDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLS------ 251

Query: 311 YKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNV 355
             +CA +GAL  G W+H Y++K Q+          ID      ++E A  +F  +  ++ 
Sbjct: 252 --ACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDR 309

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W+ +I AYA   + ++AI LF EM++ G KPD VTF+ +L ACSH GLV EG  +   
Sbjct: 310 QAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDS 369

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
             R + + P ++HYGC+ DLL R+G L+ +  FI  +PI P   +W +LL AC    +  
Sbjct: 370 M-REFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDAD 428

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           L +  F+ + E D  + G +V+ +N+ A  GR ++M+R+R  + + G+ K  G S IE  
Sbjct: 429 LGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVD 488

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ--------------QQGLQETSLQ---HR 578
             VH+F +GD  +P S +   M++ +   L+              + G +E ++    H 
Sbjct: 489 NRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHS 548

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LA++FGL++TS  TT+R+V NLR+C DCHS  K+ S V+NR I++RD  RFH F+ G 
Sbjct: 549 EKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGV 608

Query: 639 CSCRDYW 645
           CSC DYW
Sbjct: 609 CSCGDYW 615



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG L++   +F  + +RD  +W+ MI  Y +    RE + L  +M  +G+ PD+VT
Sbjct: 287 MYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVT 346

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            + ++ A +    +  G  L  F       +   + +Y  + D+  + G++  A + +  
Sbjct: 347 FLGVLYACSHSGLVSEG--LQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDE 404

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE----------------RNLISWTL 297
             I     +LW TL+S      + D  +++F+ ++E                 N   W  
Sbjct: 405 LPIKPT-AILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEE 463

Query: 298 M--ISGMLNQDAEFKYKSCASI 317
           M  +  ++N+    K   C+SI
Sbjct: 464 MNRVRKLMNEKGVVKVPGCSSI 485


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 196/579 (33%), Positives = 297/579 (51%), Gaps = 86/579 (14%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEM 211
            P  D   +NT++  Y+        + +  +M  +G V PD  +   +I A    R L  
Sbjct: 65  FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-------------------- 251
           G  +H    +  ++    +   L+ MY  CG +  A+K+                     
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184

Query: 252 -----GRYEIDEVDVVL----WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
                G  EI +  +V     W  +++GY+K+ E + A+R+F EM  R+ +SW+ MI G+
Sbjct: 185 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 244

Query: 303 LNQ---DAEFKY--------------------KSCASIGALYHGIWVHVYIKK------- 332
            +    +  F Y                     +C+  G+   G  +H +++K       
Sbjct: 245 AHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIV 304

Query: 333 --NQISID------NIELAYDLFSEISEKNVYL-WTSVIAAYAMAGHAQKAIDLFLEMEE 383
             N   ID      N+ +A  +F  + EK   + WTS+IA  AM G  ++A+ LF EM  
Sbjct: 305 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 364

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            G  PD ++FI+LL ACSH GL++EG D+ S+  RVY+I+P+++HYGCMVDL GR+G L+
Sbjct: 365 YGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQ 424

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           ++ +FI  MPIPP   +W +LL AC  H N++LAE   + L E DP N G  VLL+N YA
Sbjct: 425 KAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYA 484

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
            AG+  D++ IR  +    +KK   +SL+E G  ++KFT+G+       E +  L EI +
Sbjct: 485 TAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIIL 544

Query: 564 TLQQQG-----------------LQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICG 606
            L+ +                   ++   +H E+LA+AF L   S+   IRIV NLRIC 
Sbjct: 545 RLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICR 604

Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           DCH+ MK+TS+VY  EI++RD  RFH F+ G CSCRDYW
Sbjct: 605 DCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 187/568 (32%), Positives = 295/568 (51%), Gaps = 67/568 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPDEVTMVS 198
           G+L     L  + P+   + + + I  ++S G++R  L LLS+M     G+ P   T+ +
Sbjct: 70  GRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSA 129

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A      L +G+ LH +  +  +     +   L+ MY + G+   A+ L      D 
Sbjct: 130 SLPA---CGCLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDP 186

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------M 302
             VV  T ++S Y K  + D+AR LFD +  ++L+ W  M+ G                M
Sbjct: 187 -HVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQM 245

Query: 303 LNQDAE-------FKYKSCASIGALYHGIWVHVYI----KKNQISID------------- 338
           L    E           + A +G    G W+H ++    ++ ++ ++             
Sbjct: 246 LRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYK 305

Query: 339 --NIELAYDLFSEIS---EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
             ++E A  +F ++    +++V  W ++I  YAM G +++A++ F ++   G  P  +TF
Sbjct: 306 CGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITF 365

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           I +L+ACSH GLVDEG    +     Y I PK++HYGCMVDLLGRAG +EE+ + + SM 
Sbjct: 366 IGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMK 425

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
             PD ++W+SLL ACR H+N+ L +    +L      N G +VLL+N+YA AG+  ++ R
Sbjct: 426 AKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGR 485

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---- 569
           +R  +R  G++K+ G S +E G  V +F +GD  +P S EIY  L E+    + +G    
Sbjct: 486 VRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPH 545

Query: 570 -----------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
                       +E +L  H E+LA+AFGLIST  +T I+IV NLR C DCH+ +K+ S+
Sbjct: 546 TELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSE 605

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              R+IV RD  RFH F  G CSC DYW
Sbjct: 606 ATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 292/552 (52%), Gaps = 52/552 (9%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           LV +  L++   KCG  K    +FDK+  +++IS+ +MI  YT    + E   L  KM +
Sbjct: 66  LVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLS 125

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           EG+ PD     + ++    +R+   G+ +H+ L     + +    N LV MY + G+I  
Sbjct: 126 EGIMPDIYAYAAALAVCPTIRE---GEAIHVKLGNHERR-TPVCSNALVGMYGRFGRIAS 181

Query: 247 AQKLLG--RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
           A+ +    RY+    D+  +  +++ + K ++  +A  L+ EM  RNL       + +L+
Sbjct: 182 AKWVFDGIRYK----DLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLD 237

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---NIEL------------AYDLFSE 349
                   +C+ +GAL  G  +H  +K      D   N  L            A  +F++
Sbjct: 238 --------ACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSAHEARAVFND 289

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
              KNV+ WTS+++AY+  G +Q  ++ +  M   G  PD VTF A+ +ACSH GL DEG
Sbjct: 290 CGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEG 349

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
             +       + I P   HY CM+DLLGR G L E+   + +MP  PDV  W+ LL AC+
Sbjct: 350 LLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACK 409

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            + ++K+   A+K +TE +P + G ++L+ N+YAKAG+  D++ ++  ++  GL K  G 
Sbjct: 410 VYGDLKIGARAYKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGK 469

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ET 573
           S+IE    +H+F  GD  +P ++EI   L E+   L   G +                E 
Sbjct: 470 SMIEAQRRIHEFVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPEL 529

Query: 574 SLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
            L H ER+A+  GL+++    T+ IV NLRIC DCHSF K+ S++ +R++++RD+ RFH 
Sbjct: 530 LLFHSERMALGLGLLTSDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHI 589

Query: 634 FQGGQCSCRDYW 645
           FQ G CSC DYW
Sbjct: 590 FQRGSCSCGDYW 601



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 44/296 (14%)

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG----EAQKLLGRYEIDE---VDVVLWT 265
           K L LF +    ++  +   Y V +   C  +G    E  K + R+ I +    D+V+  
Sbjct: 12  KALQLFKKSINEELQQNQATY-VTVLKSCAHLGDDYLEDGKEIHRHAIAQGFGTDLVVQN 70

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKYKSCASIG--- 318
           +L+  Y K      A  +FD+M  +NLIS+T MI    +     +A   YK   S G   
Sbjct: 71  SLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMP 130

Query: 319 -------------ALYHGIWVHVYI----KKNQISIDNIELAYDLFSEISE--------- 352
                         +  G  +HV +    ++  +  + +   Y  F  I+          
Sbjct: 131 DIYAYAAALAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIR 190

Query: 353 -KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
            K++  + ++IA +A      KAI L++EME    +P+  T+ ++L ACS  G + EG +
Sbjct: 191 YKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSKLGALTEGKE 250

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
            + KK +  +    + +   +V++  + G   E+        +  +V  W+SL+ A
Sbjct: 251 -IHKKVKGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGL-KNVFTWTSLMSA 304


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 180/545 (33%), Positives = 288/545 (52%), Gaps = 44/545 (8%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T  L+  G +   C +F ++       +NTMI  Y ++      L L  +M   GV  D 
Sbjct: 26  TCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDN 85

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T  +L  A   LR +E G  +H ++ +  ++    + N L++MY KCGKI  +  +   
Sbjct: 86  FTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVF-- 143

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI--SWTLMISGMLNQDAEFKY 311
             +D  DV  W+ +++ +       E   +F EM          ++++S +         
Sbjct: 144 EHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVL--------- 194

Query: 312 KSCASIGALYHGIWVHVYIKKN--------QISIDN-------IELAYDLFSEISEKNVY 356
            +C  +GAL  G   HV + +N        Q S+ +       IE    LF  + +KN  
Sbjct: 195 SACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQL 254

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            ++ +I   AM G   +A+ +F +M E G KPD V ++ +LSAC+H GLVDEG    ++ 
Sbjct: 255 SYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRM 314

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
              + I+P +QHYGC+V L+GRAG L ++   I SMPI P+  +W  LL AC+ H N+++
Sbjct: 315 KLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEI 374

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
            E A K L E +  N G +V+L+N+YA+A R +D+++IR ++   G  +  G+SL++   
Sbjct: 375 GEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVER 434

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRER 580
            ++KF S D+ +P  + +Y M++++E  L+ +G    + Q                H ++
Sbjct: 435 KIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQK 494

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AF LI TS+   IRI  NLR+C DCH++ K+ S +Y REI +RD  RFH F+ G CS
Sbjct: 495 LAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCS 554

Query: 641 CRDYW 645
           CRDYW
Sbjct: 555 CRDYW 559


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 185/560 (33%), Positives = 292/560 (52%), Gaps = 64/560 (11%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA----R 203
           +L D L     ++WN MIS Y   G+Y E      +M + G+  DE T  SLISA     
Sbjct: 238 ELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCN 297

Query: 204 TKLRDLEMGKNLHLFLEESTMKISG----SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
            K+     G+ +H ++  + ++ S     S+ N L+  Y K  ++ EA+++  +  +   
Sbjct: 298 EKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR-- 355

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM------------LNQ-- 305
           D++ W  ++SGYV +   +EA  +F EM ERN+++WT+MISG+             NQ  
Sbjct: 356 DIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMK 415

Query: 306 -------DAEFK--YKSCASIGALYHGIWVHVYIKK----NQISIDN-----------IE 341
                  D  F     +C+ +G+L +G  +H  + +    + +S  N           +E
Sbjct: 416 SEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVE 475

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A  +F  +   +   W ++IAA A  GH  KAI+LF +M +    PD++TF+ +L+AC+
Sbjct: 476 SAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACN 535

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
           H GL+ EG  +       Y I P   HY  ++DLL RAG   ++ + I SMP      IW
Sbjct: 536 HAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIW 595

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            +LL  CR H N++L   A   L E  P  DG +++L+N+YA  G+ D+++R+R+ +R+ 
Sbjct: 596 EALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRER 655

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------- 570
           G+KK+ G S +E    VH F   D  +P  + +Y  L ++   +++ G            
Sbjct: 656 GVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDM 715

Query: 571 ----QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
               +E SL  H E+LAV +G++      TIR+  NLRICGDCH+  K  S+V  REIV+
Sbjct: 716 ESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVV 775

Query: 626 RDNGRFHRFQGGQCSCRDYW 645
           RD  RFH F+ G+CSC +YW
Sbjct: 776 RDRKRFHHFKNGECSCGNYW 795



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 119/525 (22%), Positives = 211/525 (40%), Gaps = 120/525 (22%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+H++T+    +  I  ++      + ++ YA+++  +  +P+I               
Sbjct: 27  VHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDI--------------- 71

Query: 120 PQEVFAIYLYLVTRTVLL---NKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMY 174
                      V RT LL   +  G +K   QLF+  P   RD +S+N MI+ Y+     
Sbjct: 72  -----------VARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDG 120

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNY 233
              L L  +M   G  PD  T  S++SA + + D E   + LH  + +    +  S+ N 
Sbjct: 121 HAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNA 180

Query: 234 LVDMYFKCGK---------IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
           L+  Y  C           +  A+K+      +++    WTT+++GYV++++   AR L 
Sbjct: 181 LLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELL 240

Query: 285 DEMVERNLISWTLMISGMLN-------------------QDAEFKYKS----CAS----I 317
           D +     ++W  MISG +                    Q+ E+ Y S    C S    +
Sbjct: 241 DGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKM 300

Query: 318 GALYHGIWVHVYIKKNQI--------SIDN------------------------------ 339
           G    G  VH YI +  +        S++N                              
Sbjct: 301 GMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISW 360

Query: 340 ------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
                       IE A  +FSE+ E+NV  WT +I+  A  G  ++ + LF +M+  G +
Sbjct: 361 NAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLE 420

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           P    F   ++ACS  G +D G    S+  R+ +    +     ++ +  R G +E + +
Sbjct: 421 PCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGH-DSGLSAGNALITMYSRCGVVESAES 479

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
              +MP    VS W++++ A   H +   A   F+ + + D L D
Sbjct: 480 VFLTMPYVDSVS-WNAMIAALAQHGHGVKAIELFEQMMKEDILPD 523



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG ++    +F  +P  D +SWN MI+     G   + + L  +M  E + PD +T
Sbjct: 467 MYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRIT 526

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEEST-MKISGSLLNY--LVDMYFKCGKIGEAQKLLG 252
            +++++A      ++ G+  H F    T   I+    +Y  L+D+  + G   +AQ ++ 
Sbjct: 527 FLTILTACNHAGLIKEGR--HYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIK 584

Query: 253 RYEIDEVDVVLWTTLVSG 270
                E    +W  L++G
Sbjct: 585 SMPF-EAGAPIWEALLAG 601


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 181/541 (33%), Positives = 281/541 (51%), Gaps = 78/541 (14%)

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
           + K+G   + PD V++V+++ A   +     GK +H     S       + N LVDMY K
Sbjct: 1   MCKLGDIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAK 60

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWT 296
           CG + EA K+  R  I E DVV W  +V+GY +    ++A  LF++M    +E N++SW+
Sbjct: 61  CGMVDEASKVFDR--IKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWS 118

Query: 297 LMISG-------------------------------MLNQDAEFKYK---------SCAS 316
            +I+                                M  QD   K           +CA 
Sbjct: 119 AVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACAR 178

Query: 317 IGALYHGIWVHVYIKKNQIS----------ID------NIELAYDLFSEISEKNVYLWTS 360
           + AL  G  +H YI +N             ID      +I++A  +F  + +KN   WTS
Sbjct: 179 LAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTS 238

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++  Y M G  ++A+++F EM   G +PD VT + +L ACSH G++D+G +F +  S+ +
Sbjct: 239 LMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEF 298

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            + P  +HY CMVDLLGRAG L E+   I  M + P   +W +LL  CR H NV+L EHA
Sbjct: 299 GVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHA 358

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K L E +  NDG++ LL+NIYA A R  D++R+R  +++ G++K+ G S ++       
Sbjct: 359 AKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTT 418

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVA 584
           F   D  +P S++IY +L  +   ++  G + ETS                +H E+LA+A
Sbjct: 419 FYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALA 478

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           +G++ ++    IRI  NLR+CGDCH+ +   S + + EI++RD+ RFH F+ G CSC  Y
Sbjct: 479 YGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGY 538

Query: 645 W 645
           W
Sbjct: 539 W 539



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 137/293 (46%), Gaps = 37/293 (12%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + E  ++FD++  +DV+SWN M++ Y+ +G + + LGL  KM  E +  + V+  +
Sbjct: 60  KCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSA 119

Query: 199 LISARTK----------LRDLEMGK---NLHLF---------LEESTMKISGSLLNYLVD 236
           +I+A  +           R+++ G+    L LF         ++ +   IS +L+     
Sbjct: 120 VIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARL 179

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
              + G+  +    + R   D   + +   L+  Y KS + D AR +FD + ++N +SWT
Sbjct: 180 AALRLGR--QIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWT 237

Query: 297 LMISGM----LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352
            +++G       ++A   +     +G    G+ + V +     S   I+   + F+ +S+
Sbjct: 238 SLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHS-GMIDQGIEFFNSMSK 296

Query: 353 KNVYL-----WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           +   +     +  ++     AG   +A++L   M+    +P  + ++ALLS C
Sbjct: 297 EFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQ---MEPSSIVWVALLSGC 346


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 179/563 (31%), Positives = 295/563 (52%), Gaps = 45/563 (7%)

Query: 111 IENQLING-YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
           I+ QLI    P  V    L  V           +++   +F  L + ++ + N  +    
Sbjct: 7   IQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALA 66

Query: 170 SMGMYREGLGLLSKM--GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
               +   +   +         +PDE T  S++ A   L  +  G+ +H  + +   + +
Sbjct: 67  QNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESN 126

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             + N L+DMYFK G +  A+ L     + + +VV W  +++GY ++ +  +A  +F  M
Sbjct: 127 LFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMM 186

Query: 288 VERNLISWTLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISID------- 338
            +           G++  D        +CA +GAL  G W+  +I + ++++        
Sbjct: 187 QQ---------FGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNAL 237

Query: 339 --------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                    I  A  +F+++ E++V  W+ +I   AM GHA +A   F EM + G KP+ 
Sbjct: 238 ADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPND 297

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           V F+ LL+AC+H GLV +G +  +   + Y + PK++HYGC+VDLL RAG L+++ + I+
Sbjct: 298 VVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMIS 357

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
           SMP+ P+V IW +LL  CR +++    +   +H+ E D  + G++V LAN+Y+  GRLDD
Sbjct: 358 SMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDD 417

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL 570
            ++ R+++R+ G+ K  G S IE    VH+F  GD+ +P S +IY M+ E+   ++  G 
Sbjct: 418 AAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGY 477

Query: 571 ---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
                          +E +L  H E+LA+AFGLISTSE TTIR+V NLRIC DCH   K+
Sbjct: 478 KPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKI 537

Query: 615 TSQVYNREIVIRDNGRFHRFQGG 637
            S +  REI++RD  RFH F+ G
Sbjct: 538 ISGIVKREIIVRDRSRFHHFKDG 560


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 195/659 (29%), Positives = 318/659 (48%), Gaps = 113/659 (17%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V ++E  C++++  +++H+H+   NL +   + T +  F+                  P 
Sbjct: 14  VRIIESHCTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTL---------------PH 58

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           I +          + YP                            LF ++ + +   ++ 
Sbjct: 59  IPV----------HTYPH--------------------------LLFSQVHSPNPFLYSA 82

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           +I  Y   G +   + L + M    VSP   T  +L S    L++  +G  LHL      
Sbjct: 83  LIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL---LKNPSLGSQLHLHAFLFG 139

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                 + N ++ MY K G +  A+K+    E+   DVV WT L+  Y +S + D A  L
Sbjct: 140 FVNDLYVGNTIIHMYVKFGVLDCARKVFD--EMPHRDVVTWTELIVAYARSGDMDSACEL 197

Query: 284 FDEMVERNLISWTLMISG-----MLNQDAEFKYK------------------SCASIGAL 320
           F  +  +++++WT M++G     M  +  +F  K                  +CA +G  
Sbjct: 198 FVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVS 257

Query: 321 YHGIWV-------------HVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
            +  W+             +V++    I +     N+E AY++F  + E NV+ ++S+I 
Sbjct: 258 GYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIV 317

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            +A+ G A+ AI LF EM E G KP+ VTF+ L +ACSH G+V++G          Y + 
Sbjct: 318 GFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVS 377

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P   HY CM DLLGRAGHLE++   + +MP+ P+  +W +LL A   H N  +AE A + 
Sbjct: 378 PTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRS 437

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE-QGGFVHKFT 542
           L E +P N G ++LL+  YA A + DD+SR+R  +R+  L+K  G S +E + G +H+F 
Sbjct: 438 LFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFF 497

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGLQET----------------SLQHRERLAVAFG 586
           +GD+ +P   EI   L+++   L+  G Q                   + H E+LA+A+G
Sbjct: 498 AGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYG 557

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           L+ST   +TI+I+ NLRIC DCH  M   S++  R+I++RDN RFH F  G CSC ++W
Sbjct: 558 LLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 27/259 (10%)

Query: 36  NVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           NV PVS     +     +     ++H H      + D  +   +    V  G L  A+++
Sbjct: 107 NVSPVSFTFSALFSLLKNPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKV 166

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
             +    ++  W  +I                       V   + G +   C+LF  LP 
Sbjct: 167 FDEMPHRDVVTWTELI-----------------------VAYARSGDMDSACELFVGLPV 203

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           +D+++W +M++ Y+   M ++ L    KM   GV  DE+T+V  ISA  +L        +
Sbjct: 204 KDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWI 263

Query: 216 HLFLEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
               E S      ++   + L+DMY KCG + EA  +     + E++V  +++++ G+  
Sbjct: 264 REIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFK--GMKEMNVFSYSSMIVGFAV 321

Query: 274 SNERDEARRLFDEMVERNL 292
                 A +LF EM+E  +
Sbjct: 322 HGRARSAIKLFYEMLENGI 340


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 196/579 (33%), Positives = 297/579 (51%), Gaps = 86/579 (14%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEM 211
            P  D   +NT++  Y+        + +  +M  +G V PD  +   +I A    R L  
Sbjct: 57  FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 116

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-------------------- 251
           G  +H    +  ++    +   L+ MY  CG +  A+K+                     
Sbjct: 117 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 176

Query: 252 -----GRYEIDEVDVVL----WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
                G  EI +  +V     W  +++GY+K+ E + A+R+F EM  R+ +SW+ MI G+
Sbjct: 177 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 236

Query: 303 LNQ---DAEFKY--------------------KSCASIGALYHGIWVHVYIKK------- 332
            +    +  F Y                     +C+  G+   G  +H +++K       
Sbjct: 237 AHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIV 296

Query: 333 --NQISID------NIELAYDLFSEISEKNVYL-WTSVIAAYAMAGHAQKAIDLFLEMEE 383
             N   ID      N+ +A  +F  + EK   + WTS+IA  AM G  ++A+ LF EM  
Sbjct: 297 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 356

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            G  PD ++FI+LL ACSH GL++EG D+ S+  RVY+I+P+++HYGCMVDL GR+G L+
Sbjct: 357 YGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQ 416

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           ++ +FI  MPIPP   +W +LL AC  H N++LAE   + L E DP N G  VLL+N YA
Sbjct: 417 KAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYA 476

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
            AG+  D++ IR  +    +KK   +SL+E G  ++KFT+G+       E +  L EI +
Sbjct: 477 TAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIIL 536

Query: 564 TLQQQG-----------------LQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICG 606
            L+ +                   ++   +H E+LA+AF L   S+   IRIV NLRIC 
Sbjct: 537 RLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICR 596

Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           DCH+ MK+TS+VY  EI++RD  RFH F+ G CSCRDYW
Sbjct: 597 DCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 198/657 (30%), Positives = 330/657 (50%), Gaps = 79/657 (12%)

Query: 37  VCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
            CP    +  V + CS   +I   + IH+ ++   +  D  +   + +  +   +  YA+
Sbjct: 130 ACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAE 189

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
                  E ++  WN      +I  Y +E                  G +++  ++F   
Sbjct: 190 SFFELMIEKDVVSWNI-----MIGAYLRE------------------GDVEKSLEMFRNF 226

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           PN+DV+SWNT+I      G  R  L  L  M A G     VT    +   + L  +E+G+
Sbjct: 227 PNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGR 286

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL----------GRYEID----EV 259
            LH  +    +   G + + LV+MY KCG++ +A  +L          G + +     + 
Sbjct: 287 QLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKA 346

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
            +V W+++VSGYV + + ++  + F  MV   ++     ++ +++        +CA+ G 
Sbjct: 347 RMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIIS--------ACANAGI 398

Query: 320 LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H YI+K  + ID               +++ A  +F +I E NV LWTS+I+ 
Sbjct: 399 LEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISG 458

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            A+ G  ++AI LF  M   G  P++VTF+ +L+ACSH GL++EG  +       Y+I P
Sbjct: 459 CALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINP 518

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +++HY  MV+L GRAGHL E+ NFI    I    S+W S L +CR H+N  + +   + L
Sbjct: 519 EVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEML 578

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            ++ P +  A++LL+N+ +   + D+ + +R  +   G+KKQ G S ++    +H FT G
Sbjct: 579 LQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVG 638

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQ--------HRERLAVAFGLI 588
           D  +P  +EIY  L+ +   L++ G        +Q+   +        H E+LA+ F +I
Sbjct: 639 DRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSII 698

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +TS +T IRI+ NLRIC DCH+F K  SQ+  REI++RD  RFH F+   CSC +YW
Sbjct: 699 NTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 91/176 (51%), Gaps = 6/176 (3%)

Query: 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT-SMGMYREGLGLLSKMGAE 187
           YL+T  V   K   L    +LFD++ +++  +W  +IS +  + G       L  +M A+
Sbjct: 72  YLLTLYV---KSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQAD 128

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G  P++ T+ S++   ++  +++ GK +H ++  + +     L N ++D+Y KC +   A
Sbjct: 129 GACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYA 188

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           +       + E DVV W  ++  Y++  + +++  +F     ++++SW  +I G++
Sbjct: 189 ESFFEL--MIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLI 242



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 111/284 (39%), Gaps = 59/284 (20%)

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
           + ++ +++I  S  NYL+ +Y K   +  A KL    EI   +   WT L+SG+ ++   
Sbjct: 58  YFKKGSLQILNSA-NYLLTLYVKSSNLDHAHKLFD--EITHKNTQTWTILISGFARAAGS 114

Query: 278 DE-ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
            E    LF EM           +S +L        K C+    +  G  +H +I +N + 
Sbjct: 115 SELVFSLFREMQADGACPNQYTLSSVL--------KCCSRENNIQFGKGIHAWILRNGVG 166

Query: 337 IDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF--- 378
            D +               E A   F  + EK+V  W  +I AY   G  +K++++F   
Sbjct: 167 GDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNF 226

Query: 379 ----------------------LEMEET------GTKPDQVTFIALLSACSHGGLVDEGY 410
                                 L +E+       GT+   VTF   L   S   LV+ G 
Sbjct: 227 PNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGR 286

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
             L  +   + +         +V++ G+ G +++++  +  +P+
Sbjct: 287 Q-LHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPL 329


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/418 (38%), Positives = 242/418 (57%), Gaps = 40/418 (9%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           DVV W ++++ Y +  + +EA  LFD+M    +      +  +L+        +CA +GA
Sbjct: 178 DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLS--------ACAHLGA 229

Query: 320 LYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAA 364
           L  G+ +H YI  N+I +++I                LA  +F+ +  K+V  W ++IA 
Sbjct: 230 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 289

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            A+ GH ++A  LF EM+E G +P+ +TF+A+LSACSH G+VDEG   L   S  Y I+P
Sbjct: 290 MAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 349

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           K++HYGC++DLL RAG LEE+   I +MP+ P+     +LL  CR H N +L E   K L
Sbjct: 350 KVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRL 409

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
               P + G ++LL+NIYA A + DD  ++R  ++  G+ K  G S+IE  G VH+F +G
Sbjct: 410 INLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAG 469

Query: 545 DIFNPHSEEIYLMLNEIEMTLQ----------------QQGLQETSLQ-HRERLAVAFGL 587
           D  +P S +IY  LNEI   L+                ++  +E +L  H E+LA+A+GL
Sbjct: 470 DWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSEKLAIAYGL 529

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +    K  IRIV NLR+C DCH   K+ S+VY REI++RD  RFH F+ G+CSC D+W
Sbjct: 530 LHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 16/248 (6%)

Query: 274 SNERDEARRLFDEMVERNLISWTLMIS-GMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
           +N R   R  F +  ++ +  +   +   M  +D E   + C  +G +  G+ + V++  
Sbjct: 99  ANGRKRFRTKFSQGQKKKMFEFAERVGWKMQKRDEELVAEFCNEVG-VDKGV-LKVWMHN 156

Query: 333 NQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
           N+ +    + A+ LFSE+  ++V  W S++A YA  G   +A+ LF +M   G KP + T
Sbjct: 157 NKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEAT 216

Query: 393 FIALLSACSHGGLVDEGYDFLS----KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
            ++LLSAC+H G +D+G    +     +  V +I         +VD+  + G +  +   
Sbjct: 217 VVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGT-----ALVDMYAKCGKISLATQV 271

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET--DPLNDGAHVLLANIYAKAG 506
             +M    DV  W++++     H +VK A+  FK + E   +P ND   V + +  + AG
Sbjct: 272 FNAME-SKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEP-NDITFVAMLSACSHAG 329

Query: 507 RLDDMSRI 514
            +D+  ++
Sbjct: 330 MVDEGQKL 337


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/521 (33%), Positives = 285/521 (54%), Gaps = 33/521 (6%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            +F  + N +V +WNTM   Y         L    +M    + PD  T   L+ A +K  
Sbjct: 85  NVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSL 144

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           ++  G+ +H     +  +    + N L+ +Y  CG    A  +     + + D+V   ++
Sbjct: 145 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFEL--MRDRDLVAXISV 202

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++G+  +    EA  LF EM    +      +  +L+  AE        +GAL  G  VH
Sbjct: 203 INGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAE--------LGALELGRRVH 254

Query: 328 VYIKKNQISIDN--IELAYDLFSEIS-----EKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
           VY+ K  +  ++       DL+++       E+N   WTS+I   A+ G  ++A++LF E
Sbjct: 255 VYLLKVGLRENSHVTNSLLDLYAKCDAIWEXERNAVSWTSLIVGLAVNGFGEEALELFRE 314

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           ME  G  P ++TF+ +L ACSH G++DEG+D+  +    + I P+++HYGCMVDLL RAG
Sbjct: 315 MEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAG 374

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
            ++++  +I +MP+ P+   W +LL AC  H ++ L E A  HL + +P + G +VLL+N
Sbjct: 375 LVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSN 434

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           +Y    R  D+  IR  +   G+KK  GYSL+E G  V++FT G+  +P S+++Y +L +
Sbjct: 435 LYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEK 494

Query: 561 IEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRI 604
           I   L+ +G                +E +L  H E+ A+AF  ++T+  TTIR++ NLR+
Sbjct: 495 ITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRV 554

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           C DCH  +K+ ++VY+REIVIRD GRFH F+GG CSC+DYW
Sbjct: 555 CADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           +  AY++F+ I   NV+ W ++   YA + +   A+  + +M  +  +PD  T+  LL A
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139

Query: 400 CSHGGLVDEG 409
            S    V EG
Sbjct: 140 ISKSLNVREG 149


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 194/623 (31%), Positives = 313/623 (50%), Gaps = 73/623 (11%)

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL-----VTRTVLLN-- 138
            G +  A+++  +  E  +  W +++   +  G   E   ++  +     V+ TV+L   
Sbjct: 173 NGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGL 232

Query: 139 -KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            + G++ E C+LFD +P +DV++   MI  Y  +G   E   L  +M    V    V+  
Sbjct: 233 LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNV----VSWT 288

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++I+   + + +++ + L   + E   ++S + +   +  Y  CG++ EA +L     I 
Sbjct: 289 TMITGYVQNQQVDIARKLFEVMPEKN-EVSWTAM---LKGYTNCGRLDEASELFNAMPIK 344

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------- 310
              VV    ++  + ++ E  +AR++FD+M E++  +W+ MI     +  E         
Sbjct: 345 --SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRM 402

Query: 311 ----------------YKSCASIGALYHGIWVHVYIKKNQISID---------------N 339
                              CA +  L HG  +H  + ++Q  +D               N
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGN 462

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           +  A  +F   + K+V +W S+I  YA  G   +A+ +F +M  +G  PD VTF+ +LSA
Sbjct: 463 LAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSA 522

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           CS+ G V +G +  +     Y ++ K++HY CMVDLLGRAG L E+ + I  MP+  D  
Sbjct: 523 CSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAI 582

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           IW +LL ACR H  + LAE A K L   +P N G  +LL+NIYA  GR DD++ +R  +R
Sbjct: 583 IWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMR 642

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIF-NPHSEEIYLMLNEIEMTLQQQGL-------- 570
           D  + K  G S I     VHKFT GD   +P   EI  +L  +   L++ G         
Sbjct: 643 DRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVL 702

Query: 571 ----QETSLQ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
               +E  +Q    H E+LAVA+GL+       IR++ NLR+CGDCH+ +K+ ++V  RE
Sbjct: 703 HDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGRE 762

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           I++RD  RFH F+ G CSCRDYW
Sbjct: 763 IILRDANRFHHFKDGSCSCRDYW 785



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 184/396 (46%), Gaps = 39/396 (9%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL---------L 137
           G +  A+ +  +  +  I  WNSI+     N  PQE   ++  +  R  +         +
Sbjct: 112 GQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYI 171

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           N  G + E  ++FD++P R+V+SW  M+  Y   GM  E   L  +M  + V    V + 
Sbjct: 172 NN-GMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLG 230

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            L+    + R  E  +   +  E+  +  +      ++  Y + G++ EA+ L    E+ 
Sbjct: 231 GLLQ---EGRIDEACRLFDMMPEKDVVTRTN-----MIGGYCQVGRLVEARMLFD--EMP 280

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
             +VV WTT+++GYV++ + D AR+LF+ M E+N +SWT M+ G         Y +C  +
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKG---------YTNCGRL 331

Query: 318 ---GALYHGIWVHVYIKKNQISI-----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
                L++ + +   +  N + +       +  A  +F ++ EK+   W+++I  Y   G
Sbjct: 332 DEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKG 391

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
               A++LF  M+  G +P+  + I++LS C+    +D G +  ++  R       +   
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS-QFDLDVYVA 450

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             ++ +  + G+L ++        +  DV +W+S++
Sbjct: 451 SVLLSMYIKCGNLAKAKQVFDRFAV-KDVVMWNSII 485



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 67/347 (19%)

Query: 129 YLVTRTVLL---NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           ++++R  L+   ++ G++++   +FD++ ++++ISWN++++ Y      +E   +  KM 
Sbjct: 97  FIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMS 156

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
                                             E +T+  +G     LV  Y   G I 
Sbjct: 157 ----------------------------------ERNTISWNG-----LVSGYINNGMIN 177

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
           EA+++  R  + E +VV WT +V GYVK     EA  LF +M E+N++SWT+M+ G+L Q
Sbjct: 178 EAREVFDR--MPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL-Q 234

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQIS----IDNIELAYDLFSEISEKNVYLWTSV 361
           +     ++C     +       V  + N I     +  +  A  LF E+  +NV  WT++
Sbjct: 235 EGRID-EACRLFDMMPEK---DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTM 290

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I  Y        A  LF  M E     ++V++ A+L   ++ G +DE        S ++N
Sbjct: 291 ITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEA-------SELFN 339

Query: 422 IKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
             P      C  M+   G+ G + ++      M    D   WS++++
Sbjct: 340 AMPIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMIK 385



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 94/235 (40%), Gaps = 60/235 (25%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P  + V+ V    +++D    IH+ L+ +    D  +++ +    +  G+L  A+Q+  +
Sbjct: 413 PSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDR 472

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
               ++ +WNSI     I GY Q                                     
Sbjct: 473 FAVKDVVMWNSI-----ITGYAQH------------------------------------ 491

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
                        G+  E L +   M   G+ PD+VT V ++SA +   +++ G  L +F
Sbjct: 492 -------------GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKG--LEIF 536

Query: 219 LE-ESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
              E+  ++   + +Y  +VD+  + GK+ EA  L+ +  + E D ++W  L+  
Sbjct: 537 NSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPM-EADAIIWGALLGA 590


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 208/705 (29%), Positives = 339/705 (48%), Gaps = 105/705 (14%)

Query: 44   VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
            +    RS    DE  ++H  ++ T ++ D  + T +  F    G +  AQ++  +  +  
Sbjct: 381  ITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHN 440

Query: 104  IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNK---------CGKLK---------- 144
            +  W S++     +G P EV  +Y  +    V  N+         CG L+          
Sbjct: 441  VVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLG 500

Query: 145  ----------------------------EVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
                                        E C +FD +   D+ISWN MIS Y   G+ RE
Sbjct: 501  HIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRE 560

Query: 177  GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
             L     M       +  T+ SL+S  + + +L+ G+ +H  + +  +  +  + N L+ 
Sbjct: 561  SLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLT 620

Query: 237  MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER---NLI 293
            +Y + G+  +A+ +     + E D++ W ++++ YV+  +  +  ++  E+++    + +
Sbjct: 621  LYSEAGRSEDAELVF--QAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRV 678

Query: 294  SWTLMISGMLNQD----AEFKYK------------------SCASIGALYHGIWVHVYIK 331
            +W  +I G    +    A   YK                  + A++  L  G  +H  + 
Sbjct: 679  TWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEEGQQLHGLVI 738

Query: 332  KNQISID--NIELAYDLFSEISEKNVYL-------------WTSVIAAYAMAGHAQKAID 376
            K     D      A D++ +  E +  L             W  +I+A+A  G  QKA +
Sbjct: 739  KLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARE 798

Query: 377  LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
             F EM + G KPD VTF++LLSAC+HGGLVDEG  +    +R + + P ++H  C++DLL
Sbjct: 799  TFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLL 858

Query: 437  GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
            GR+G L  +  FI  MP+PP+   W SLL ACR H N++LA    +HL E DP +D A+V
Sbjct: 859  GRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYV 918

Query: 497  LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
            L +N+ A +G+ +D+  +R ++    +KKQ   S ++    VH F  G+ ++P +  I  
Sbjct: 919  LYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISA 978

Query: 557  MLNEI-EMTLQQQGLQETSL---------------QHRERLAVAFGLISTSEKTTIRIVN 600
             L E+ +MT +   + +TS                 H ERLA+AFGLI+T E +T+RI  
Sbjct: 979  KLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFK 1038

Query: 601  NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+CGDCHS  K  S +  R+IV+RD  RFH F GG+CSC DYW
Sbjct: 1039 NLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 191/434 (44%), Gaps = 65/434 (14%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           IH+HLIT     D  ++T++  F V  GD+  A+ +     E  +  W +++     NG 
Sbjct: 52  IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 111

Query: 120 PQEVFAIYLYLVTRTVLLN--------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
            ++ F ++  +    V  N        KCGK+++   LF  +  RDV+SWN MI  Y   
Sbjct: 112 FEKAFVLFSDMRHCGVKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQ 171

Query: 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231
           G   +   +   M   G+ PD  T+ S++ A  +   L +   +H  + +        + 
Sbjct: 172 GFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVT 231

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG----------------YVKSN 275
             L++ Y K G +  A+ L  R  + + D+   T L++G                Y KS 
Sbjct: 232 GLLINAYAKNGSLRSAKDL--RKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSG 289

Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
           E ++A+R FDEM E+N+ISWT +ISG     A+  Y      G + H  +V         
Sbjct: 290 EIEDAKRAFDEMEEKNVISWTSLISGY----AKHGY------GHMAHARYV--------- 330

Query: 336 SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
                      F E+  +N   W+++++ Y   G  ++A+ LF +M   G +P+     +
Sbjct: 331 -----------FDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVAS 379

Query: 396 LLSACSHGG-LVDEGYD---FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           L++ACS  G + DEG+    F+ K   + ++         +V   G  G +  +      
Sbjct: 380 LITACSRSGYMADEGFQVHGFVVKTGILGDVYVGT----ALVHFYGSIGLVYNAQKLFEE 435

Query: 452 MPIPPDVSIWSSLL 465
           MP   +V  W+SL+
Sbjct: 436 MP-DHNVVSWTSLM 448



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 149/318 (46%), Gaps = 37/318 (11%)

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145
           +G++  A++   + +E  +  W S+I     +GY     A Y+                 
Sbjct: 288 SGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYV----------------- 330

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205
               FD++ +R+  SW+TM+S Y  +G+Y E +GL  +M   GV P+   + SLI+A ++
Sbjct: 331 ----FDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSR 386

Query: 206 LRDL-EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
              + + G  +H F+ ++ +     +   LV  Y   G +  AQKL    E+ + +VV W
Sbjct: 387 SGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLF--EEMPDHNVVSW 444

Query: 265 TTLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMIS--GMLNQDAEFKYKSCASIG 318
           T+L+ GY  S    E     +R+  E V  N  ++  + S  G+L +D    Y+    I 
Sbjct: 445 TSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLL-EDQVLGYQVLGHI- 502

Query: 319 ALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
            + +G    V +  + IS+     ++E A  +F  ++E ++  W ++I+AYA  G  +++
Sbjct: 503 -IQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRES 561

Query: 375 IDLFLEMEETGTKPDQVT 392
           +  F  M     + +  T
Sbjct: 562 LRCFHWMRHLHNETNSTT 579


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 204/630 (32%), Positives = 319/630 (50%), Gaps = 61/630 (9%)

Query: 66  TTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP-----EIKIWNSIIENQLINGYP 120
           TT    D   +  + + L   G+L  A Q++ Q   P     E+ I +   +N L  G  
Sbjct: 40  TTRSNGDSNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGID 99

Query: 121 QEVFAIY------LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173
                I+       +L T+ + + ++   +    ++FDK   R +  WN +    T  G 
Sbjct: 100 LHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGY 159

Query: 174 YREGLGLLSKMGAEGVSPDEVT----MVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
            RE L L  +M   GV  D  T    + + +++   +  L  G+ +H  +     +    
Sbjct: 160 GREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVH 219

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           ++  L+DMY + G +  A ++  +  +   +VV W+ +++ Y K+ +  EA  LF +M+ 
Sbjct: 220 IMTTLLDMYARFGCVLNASRVFDQMPVK--NVVSWSAMIACYSKNGKPLEALELFRKMML 277

Query: 290 RN---LISWTLMISGMLNQDAEFKYKSCASIGALYHG---------------IWVHVYIK 331
            N   L +   M+S +    A    +     G L HG                 V VY +
Sbjct: 278 ENQDLLPNSVTMVSVLQACAALAALEQ----GKLMHGYILRRGLDSILPVVSALVTVYAR 333

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                  N+EL + +F  + +++V  W S+I++Y + G  +KAI +F EM + G  P  +
Sbjct: 334 -----CGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPI 388

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           +F+++L ACSH GLV+EG        R + I P ++HY CMVDLLGRA  L+E+A  I  
Sbjct: 389 SFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDD 448

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           M I P   +W SLL +CR H NV+LAE A   L E +P N G +VLLA+IYA+A   +++
Sbjct: 449 MRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEV 508

Query: 512 SRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL- 570
            R++M L   GL+K  G S IE    ++ F S D FNP  E+++ +L ++ M ++++G  
Sbjct: 509 KRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYV 568

Query: 571 ---------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
                          +   L H E+LA+AFGLI++ +  TIRI  NLR+C DCHS  K  
Sbjct: 569 PDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFI 628

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S+  NREI++RD  RFH FQ G CSC DYW
Sbjct: 629 SKFANREILVRDVNRFHLFQDGVCSCGDYW 658


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 286/546 (52%), Gaps = 35/546 (6%)

Query: 130 LVTRTV-LLNKCGKLKEVCQLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           L TR V L   CG +    ++FD++PN+ +V  WN +I  Y   G     + L   M A 
Sbjct: 105 LATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAY 164

Query: 188 G-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           G + PD  T   ++ A   L DL  G+ +H  +  +       +   L+DMY KCG + E
Sbjct: 165 GSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDE 224

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A  +     I   D  +W ++++   ++    EA  L   M    +      I+ +++  
Sbjct: 225 AWAVFNDTTIR--DAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAP---TIATLVSAI 279

Query: 307 AEFKYKSCASIGALYHGI-WVHVYIKKNQISIDNIEL---------AYDLFSEISEKNVY 356
           +     S    G   HG  W   +  ++++    +++         A+ LF ++  + + 
Sbjct: 280 SAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELI 339

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
            W ++I  + M GHA  A +LF  M  E    PD +TF+ +LSAC+HGG+V E  +    
Sbjct: 340 SWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDL 399

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
              VY+IKP +QHY C+VD+LG +G  +E+++ I  M + PD  IW +LL  C+ H+NV+
Sbjct: 400 MVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVE 459

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           LAE A + L E +P + G +VLL+NIYA++G+ ++ +R+R  + + GLKK +  S IE  
Sbjct: 460 LAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELK 519

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRE 579
           G  H F  GD  +P S++IY  L  +E  + Q G    +                  H E
Sbjct: 520 GKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPVFHNVEDDEKRNMVWGHSE 579

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           RLA+AFGLIST  +T + +  NLR+C DCH  +K+ SQ+  REI+IRD  R+H F  G+C
Sbjct: 580 RLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGEC 639

Query: 640 SCRDYW 645
           SC+D+W
Sbjct: 640 SCKDHW 645



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 31/206 (15%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           R +  G+ LH  L  S   +   L   LVD+Y  CG +  A+++      ++ +V LW  
Sbjct: 82  RAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMP-NQGNVFLWNV 140

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYH 322
           L+  Y +    + A  L+  M          +  G +  D  F Y    K+CA++  L  
Sbjct: 141 LIRAYARDGPCEAAIELYRAM----------LAYGSMKPD-NFTYPPVLKACAALLDLSA 189

Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  VH  + +   + D                ++ A+ +F++ + ++  +W S+IAA   
Sbjct: 190 GREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQ 249

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTF 393
            G   +A+ L   M   G  P   T 
Sbjct: 250 NGRPAEALTLCRNMAAEGIAPTIATL 275


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 207/698 (29%), Positives = 328/698 (46%), Gaps = 100/698 (14%)

Query: 36  NVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
            + P       V ++CS++ E      IH  +    L  +  +ST + +F    G L  A
Sbjct: 114 GITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDA 173

Query: 93  QQIIRQGDEPEIKIWNSIIE---------------------------------------- 112
           +++  +  + ++  WNS+I                                         
Sbjct: 174 KEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQV 233

Query: 113 NQLINGYPQEVFAIYLYLVTRTVL-------LNKCGKLKEVCQLFDKLP-NRDVISWNTM 164
           N L +G     F +    V   V+         KC  +    ++FD +   ++ ++W+ M
Sbjct: 234 NSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAM 293

Query: 165 ISCYTSMGMYREGLGLLSKM---GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           +  Y      RE L L  ++     + +    VT+ ++I     L DL  G  LH +  +
Sbjct: 294 VGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIK 353

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           S   +   + N L+ MY KCG I  A +     E+D  D V +T ++SGYV++   +E  
Sbjct: 354 SGFVLDLMVGNTLLSMYAKCGIINGAMRFFN--EMDLRDAVSFTAIISGYVQNGNSEEGL 411

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISIDN 339
           R+F EM           +SG+  + A       +CA +  L++G   H Y      + D 
Sbjct: 412 RMFLEM----------QLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADT 461

Query: 340 ---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
                          I+ A  +F  + ++ +  W ++I AY + G   +A+ LF  M+  
Sbjct: 462 MICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSE 521

Query: 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
           G KPD VTFI L+SACSH GLV EG  + +  ++ + I P+M+HY CMVDLL RAG  +E
Sbjct: 522 GLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKE 581

Query: 445 SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504
             +FI  MP+ PDV +W +LL ACR ++NV+L E   K + +  P + G  VLL+N+Y+ 
Sbjct: 582 VHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSA 641

Query: 505 AGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI-FNPHSEEIYLMLNEIEM 563
            GR DD +++R   ++ G +K  G S IE  G VH F  G    +P   +I   L+E+ +
Sbjct: 642 VGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLV 701

Query: 564 TLQQQGLQETS----------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
            +++ G Q  S                L H E+LA+AFG++S S    I +  NLR+CGD
Sbjct: 702 EMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGD 761

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CH+ +K  S V  R+I +RD  RFH F+ G C+C D+W
Sbjct: 762 CHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 127/263 (48%), Gaps = 34/263 (12%)

Query: 140 CGKLKEVCQLFDKLPNR--DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           C +LK    +FDK+P+R  +V+ WN +I  Y   G Y E + L  KM   G++P+  T  
Sbjct: 64  CSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFP 123

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            ++ A + L++   G+ +H  ++   ++ +  +   LVD Y KCG + +A+++  +  + 
Sbjct: 124 FVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDK--MH 181

Query: 258 EVDVVLWTTLVSGY-VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
           + DVV W +++SG+ +     DE  RL  +M + ++   +  I G+L         + A 
Sbjct: 182 KRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVL--------PAVAQ 232

Query: 317 IGALYHGIWVHVYIKKNQI------------------SIDNIELAYDLFSEISEKNVYLW 358
           + +L HG  +H +  +                      ID     +D+   +  KN   W
Sbjct: 233 VNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIV--KNEVTW 290

Query: 359 TSVIAAYAMAGHAQKAIDLFLEM 381
           ++++ AY +    ++A++LF ++
Sbjct: 291 SAMVGAYVVCDFMREALELFCQL 313



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 26/186 (13%)

Query: 312 KSCASIGALYHGIWVHVYIKK-----NQISIDNIELAY----DLFSEISE---------- 352
           +SC    +L+ G  +H ++ K     ++ ++ N ++ +    DL+   SE          
Sbjct: 17  ESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDK 76

Query: 353 -----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
                KNV LW  +I AYA  G  ++AIDL+ +M   G  P++ TF  +L ACS      
Sbjct: 77  MPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEAS 136

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG +      R+  ++  +     +VD   + G L+++      M    DV  W+S++  
Sbjct: 137 EGREIHCDIKRL-RLESNVYVSTALVDFYAKCGCLDDAKEVFDKMH-KRDVVAWNSMISG 194

Query: 468 CRCHQN 473
              H+ 
Sbjct: 195 FSLHEG 200



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/252 (17%), Positives = 105/252 (41%), Gaps = 30/252 (11%)

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           LVD+Y  C ++  A+ +  +      +VVLW  L+  Y  +   +EA  L+ +M+   + 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--------------- 338
                          F  K+C+++     G  +H  IK+ ++  +               
Sbjct: 117 PNRFTFP--------FVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCG 168

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
            ++ A ++F ++ +++V  W S+I+ +++   +   +   L   +    P+  T + +L 
Sbjct: 169 CLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLP 228

Query: 399 ACSHGGLVDEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
           A +    +  G   + F  ++  V ++         ++D+ G+   ++ +      M I 
Sbjct: 229 AVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTG----ILDVYGKCQCIDYARRIFDMMGIV 284

Query: 456 PDVSIWSSLLRA 467
            +   WS+++ A
Sbjct: 285 KNEVTWSAMVGA 296


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 187/553 (33%), Positives = 287/553 (51%), Gaps = 92/553 (16%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMY-REGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
           ++F+++P  +V++W  ++S Y   G    + + L  KM  EG+ P+ +T  S++ A   L
Sbjct: 314 EVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANL 373

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            D + G+ +H    +S +     + N LV MY + G I                      
Sbjct: 374 GDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSI---------------------- 411

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE------------------ 308
                      +EAR  FD++ E+N++S+    SG L+ D                    
Sbjct: 412 -----------EEARHAFDQLYEKNMVSF----SGNLDGDGRSNTYQDYQIERMELGIST 456

Query: 309 FKYKS----CASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSE 349
           F + S     AS+G L  G  +H    K     D                +  A  +F E
Sbjct: 457 FTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDE 516

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           +++ NV  WTS+I+  A  G+A +A++LF +M   G KP+ VT+IA+LSACSH GLV EG
Sbjct: 517 MNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEG 576

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
            +      + + + P+M+HY CMVDLLGR+G +E++ +FI  MP   D  +W +LL AC+
Sbjct: 577 KEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACK 636

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            H N+ + E A  H+ + +P +   +VLL+N+YA+AG  D ++RIR  +RD  L K+ G 
Sbjct: 637 THNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGL 696

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS-------------- 574
           S +     +H+F +GD  +P +EEIY  L  +   ++  G + +TS              
Sbjct: 697 SWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELC 756

Query: 575 -LQHRERLAVAFGLIS-TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
            LQH E++AVAFGLIS TS    IRI  NLR+C DCHS +K  S+   REI++RD+ RFH
Sbjct: 757 LLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFH 816

Query: 633 RFQGGQCSCRDYW 645
           R + G+CSC +YW
Sbjct: 817 RMKDGECSCGEYW 829



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 35/299 (11%)

Query: 135 VLLNKCGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
            L +KC  +     +FD +P   RD++SW  M SC +  G   E L L  +   EG+ P+
Sbjct: 92  TLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETLEEGLLPN 151

Query: 193 EVTMVSLISA--RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
             T+ +   A   ++L  L  G  L L  +        S+   L+DM+ K G +   +++
Sbjct: 152 AFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRV 211

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE-- 308
                + E  VV+WT L++ Y +S   DEA  LF +M+E         +S ML+   E  
Sbjct: 212 FD--GLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELG 269

Query: 309 ----------------FKYKSCASIGALYHGIWVHVYIKK-NQISIDNIELAYDLFSEIS 351
                            +  SC S G       V +Y K  N  S+ N   A ++F+ + 
Sbjct: 270 SFRLGQQLHSLALRLGLESDSCVSCG------LVDMYAKSHNGQSLHN---AREVFNRMP 320

Query: 352 EKNVYLWTSVIAAYAMAG-HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           + NV  WT++++ Y   G    + + LF +M   G +P+ +T+ ++L AC++ G  D G
Sbjct: 321 KHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSG 379



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 11/208 (5%)

Query: 208 DLEMGKNL--HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           D+ +G+ L  HL    S ++    + N L+ +Y KC  +  A+ +     +   D+V WT
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLI--SWTLMISGMLNQDAE-FKYKSCASIGALYH 322
            + S   ++    EA RLF E +E  L+  ++TL  +      +E F     A +G ++ 
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFK 181

Query: 323 -GIW---VHVYIKKNQISIDNIELAY--DLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            G W   V V      +   N +L     +F  + E+ V +WT +I  YA +G++ +A++
Sbjct: 182 LGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVE 241

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGG 404
           LFL+M E G +PDQ T  ++LSAC+  G
Sbjct: 242 LFLDMLENGFQPDQYTLSSMLSACTELG 269



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 163/376 (43%), Gaps = 66/376 (17%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  K G L  + ++FD L  R V+ W  +I+ Y   G   E + L   M   G  PD+ T
Sbjct: 198 MFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYT 257

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC---GKIGEAQKLLG 252
           + S++SA T+L    +G+ LH       ++    +   LVDMY K      +  A+++  
Sbjct: 258 LSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFN 317

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEAR-----RLFDEMVERNLISWTLMISGMLNQDA 307
           R  + + +V+ WT L+SGYV+   +D        ++ +E +  N I+++ M+        
Sbjct: 318 R--MPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSML-------- 367

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISE 352
               K+CA++G    G  +H +  K+ ++  N               IE A   F ++ E
Sbjct: 368 ----KACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYE 423

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           KN+  ++  +      G +    D  +E  E G      TF +L+SA +  G+       
Sbjct: 424 KNMVSFSGNLDG---DGRSNTYQDYQIERMELGIST--FTFGSLISAAASVGM------- 471

Query: 413 LSKKSRVYNIKPKMQHYG-------CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           L+K  R++ +  K   +G        +V +  R G+L ++      M    +V  W+S++
Sbjct: 472 LTKGQRLHALSLKAG-FGSDRAIGNSLVSMYSRCGYLVDACQVFDEMN-DHNVISWTSMI 529

Query: 466 RACRCHQNVKLAEHAF 481
                     LA+H +
Sbjct: 530 SG--------LAKHGY 537



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG L + CQ+FD++ + +VISW +MIS     G     L L   M A GV P++VT
Sbjct: 500 MYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVT 559

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            ++++SA +    ++ GK  H  + +    +   + +Y  +VD+  + G + +A   +  
Sbjct: 560 YIAVLSACSHAGLVKEGKE-HFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINE 618

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERD 278
               +VD ++W TL+      N  D
Sbjct: 619 MPC-QVDALVWKTLLGACKTHNNMD 642


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 198/633 (31%), Positives = 311/633 (49%), Gaps = 106/633 (16%)

Query: 24  LVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFL 83
           L P  R+   F   C  S           ++D+  +IH+HL ++                
Sbjct: 47  LAPTPRVYHAFITACAQS----------KNLDDARKIHAHLASSR--------------- 81

Query: 84  VFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKL 143
            F GD                    + ++N LI+                  L  KCG +
Sbjct: 82  -FAGD--------------------AFLDNSLIH------------------LYCKCGSV 102

Query: 144 KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
            E  ++FDK+ N+D++SW ++I+ Y    M  E +GLL  M      P+  T  SL+ A 
Sbjct: 103 VEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAV 162

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL 263
               D  +G  +H    +        + + L+DMY +CGK+  A  +  +  +D  + V 
Sbjct: 163 GAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDK--LDSKNGVS 220

Query: 264 WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
           W  L+SG+ +  + + A  +F EM +RN    T      +       + + A IGAL  G
Sbjct: 221 WNALISGFARKGDGETALMVFAEM-QRNGFEATHFTYSSI-------FSALAGIGALEQG 272

Query: 324 IWVHVYIKKNQIS----IDNIEL-----------AYDLFSEISEKNVYLWTSVIAAYAMA 368
            WVH ++ K++      + N  L           A  +F  +  K++  W S++ A+A  
Sbjct: 273 KWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQY 332

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
           G  ++A+  F EM ++G   +Q++F+ +L+ACSHGGLV EG  +     + YN++P+++H
Sbjct: 333 GLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDM-IKEYNLEPEIEH 391

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           Y  +VDLLGRAG L  +  FI  MP+ P  ++W +LL ACR H+N K+ + A  H+ + D
Sbjct: 392 YVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLD 451

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           P + G  VLL NIYA  G  D  +R+R  ++  G+KK+   S +E    VH F + D  +
Sbjct: 452 PDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTH 511

Query: 549 PHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSE 592
           P +EEIY M +EI M ++++G                +E +LQ H E++A+AF LI    
Sbjct: 512 PRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPA 571

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVI 625
             TIRI+ N+RICGDCHS  K  S+V+ REIVI
Sbjct: 572 GATIRIMKNIRICGDCHSAFKYISKVFEREIVI 604


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 201/676 (29%), Positives = 347/676 (51%), Gaps = 58/676 (8%)

Query: 16  EPKLVRLGLVPKMRI--SRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDP 73
           +P  V+LG+     +  S  FA+V  V+  +I +   C  +++  R+   ++  + +   
Sbjct: 260 DPSFVKLGMGIHGAVLKSNHFADV-YVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWN 318

Query: 74  QISTQVFEFLVFTGDLGYAQQIIRQGDEP-EIKIWNSIIEN----QLINGYPQEVFAIYL 128
            + + + +  +++  L Y + +   G +P ++ + N I  +     L+ G     +AI  
Sbjct: 319 TLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRN 378

Query: 129 YLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
            L +   + N       KC  +K +   F+ +  +D+ISW T+I+ Y     + E + L 
Sbjct: 379 GLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLF 438

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            K+  +G+  D + + S++ A + L+     + +H ++ +  +     L N +V++Y + 
Sbjct: 439 RKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEV 497

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG 301
           G I  A++      I   D+V WT++++  V +    EA  LF  + + N+   ++ I  
Sbjct: 498 GHIDYARRAF--ESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIIS 555

Query: 302 MLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
            L+        + A++ +L  G  +H ++ +    ++                +E +  +
Sbjct: 556 ALS--------ATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKM 607

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F  + ++++ LWTS+I A  M G   KAI LF +M +    PD +TF+ALL ACSH GL+
Sbjct: 608 FHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLM 667

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
            EG  F       Y ++P  +HY CMVDLL R+  LEE+ +F+ +MPI P   IW +LL 
Sbjct: 668 VEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLG 727

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           AC  H N +L E A K L ++D  N G + L++NI+A  GR +D+  +R++++  GLKK 
Sbjct: 728 ACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKN 787

Query: 527 LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-------------LQET 573
            G S IE    +H F + D  +P +++IYL L +    L+++G              +E 
Sbjct: 788 PGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEE 847

Query: 574 SLQ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
             Q    H ERLA+ +GL+ T + T IRI  NLRIC DCH+F K+ S+V  R +V+RD  
Sbjct: 848 KTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDAN 907

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSC D+W
Sbjct: 908 RFHHFERGLCSCGDFW 923



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 181/439 (41%), Gaps = 55/439 (12%)

Query: 129 YLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           +L T+ VL+  KCG L++  ++FD++  R + SWN ++  + S G Y E + L   M   
Sbjct: 80  FLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVL 139

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV+ D  T  S++ A   L +  +G  +H    +        + N L+ MY KCG +G A
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGA 199

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--Q 305
           + L     +++ D V W +++S +V      EA  LF  M E  + S T      L   +
Sbjct: 200 RVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVE 259

Query: 306 DAEFKYKSCASIGALYHGI------WVHVYIKKNQISI----DNIELAYDLFSEISEKNV 355
           D  F       +G   HG       +  VY+    I++      +E A  +F  +  ++ 
Sbjct: 260 DPSF-----VKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDY 314

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF--- 412
             W ++++          A++ F +M+ +G KPDQV+ + L++A    G + +G +    
Sbjct: 315 VSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAY 374

Query: 413 -----LSKKSRVYNIKPKMQHYGCMVDLLGRA-----------------------GHLEE 444
                L    ++ N    M    C V  +G A                        HLE 
Sbjct: 375 AIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEA 434

Query: 445 SANF----ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
              F    +  M + P   +  S+LRAC   ++         ++ + D  +      + N
Sbjct: 435 INLFRKVQVKGMDVDP--MMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVN 492

Query: 501 IYAKAGRLDDMSRIRMKLR 519
           +Y + G +D   R    +R
Sbjct: 493 VYGEVGHIDYARRAFESIR 511


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/541 (33%), Positives = 288/541 (53%), Gaps = 45/541 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G   + C +FD++P R++ +WN  IS         + +    +       P+ +T  +
Sbjct: 155 KTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCA 214

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            ++A   +  L +G+ LH F+     K   S+ N L+D Y KCG I  A+ +  R   + 
Sbjct: 215 FLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIG-NR 273

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +VV W ++++  V+++E + A  +F +   + +     MIS +L+        +CA +G
Sbjct: 274 KNVVSWCSMLAALVQNHEEERACMVFLQ-ARKEVEPTDFMISSVLS--------ACAELG 324

Query: 319 ALYHGIWVHVYIKKNQISIDNI----------------ELAYDLFSEISEKNVYLWTSVI 362
            L  G  VH    K  +  DNI                E A  +FSE+ E+N+  W ++I
Sbjct: 325 GLELGRSVHALAVKACVE-DNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMI 383

Query: 363 AAYAMAGHAQKAIDLFLEME--ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
             YA  G    A+ LF EM     G +P  VT I++LS CS  G V+ G          Y
Sbjct: 384 GGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNY 443

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I+P  +H+ C+VDLLGR+G ++ +  FI +M I P +S+W +LL ACR H   +L + A
Sbjct: 444 GIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIA 503

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L E D ++ G HV+L+N+ A AGR ++ + +R +++D+G+KK +GYS I     +H 
Sbjct: 504 AEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHV 563

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ---------------HRERLAVA 584
           F + D  +  + EI  ML ++   +++ G + +T+L                H E++A+A
Sbjct: 564 FQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALA 623

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI+  +   IRI  NLRICGDCHS +K  S++  REI++RDN RFHRF+ G CSC+DY
Sbjct: 624 FGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDY 683

Query: 645 W 645
           W
Sbjct: 684 W 684



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 75/374 (20%), Positives = 154/374 (41%), Gaps = 29/374 (7%)

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           R V++W ++IS       +   L   + M  + V P++ T   +  A   ++    GK +
Sbjct: 71  RTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQI 130

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           H    +  M     +     DMY K G  G+A  +    E+ + ++  W   +S  V+  
Sbjct: 131 HGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFD--EMPQRNLATWNAYISNAVQDR 188

Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI----K 331
              +A   F E +  +    ++     LN        +C  +  L  G  +H +I     
Sbjct: 189 RSLDAIVAFKEFLCVHGEPNSITFCAFLN--------ACVDMVRLNLGRQLHAFIVRCGY 240

Query: 332 KNQISIDN-----------IELAYDLFSEI-SEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           K  +S+ N           I  A  +F+ I + KNV  W S++AA       ++A  +FL
Sbjct: 241 KEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFL 300

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
           +  +   +P      ++LSAC+  G ++ G    +   +   ++  +     +VD+ G+ 
Sbjct: 301 QARKE-VEPTDFMISSVLSACAELGGLELGRSVHALAVKAC-VEDNIFVGSALVDMYGKC 358

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499
           G +E +    + +P   ++  W++++       ++ +A   F+ +T        ++V L 
Sbjct: 359 GSIENAEQVFSELP-ERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLI 417

Query: 500 NIYAKAGRLDDMSR 513
           +I +   R+  + R
Sbjct: 418 SILSVCSRVGAVER 431



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPDE 193
           +  KCG ++   Q+F +LP R++++WN MI  Y   G     L L  +M  G+ G+ P  
Sbjct: 354 MYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSY 413

Query: 194 VTMVSLISARTKLRDLEMG 212
           VT++S++S  +++  +E G
Sbjct: 414 VTLISILSVCSRVGAVERG 432


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 191/663 (28%), Positives = 332/663 (50%), Gaps = 92/663 (13%)

Query: 49  RSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           + C+ +  F+   +IH     + L  D  +   +F   +  G +G A+++  +  + ++ 
Sbjct: 124 KVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDV- 182

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR----DVISW 161
               +  + L+  Y ++                  G L+EV ++  ++ +     +++SW
Sbjct: 183 ----VTCSALLCAYARK------------------GCLEEVVRILSEMESSGIEANIVSW 220

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N ++S +   G ++E + +  K+   G  PD+VT+ S++ +      L MG+ +H ++ +
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
             +     +++ ++DMY K G +     L  ++E+ E  V      ++G  ++   D+A 
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVC--NAYITGLSRNGLVDKAL 338

Query: 282 RLFD----EMVERNLISWTLMISGMLNQDAEFK-----------------------YKSC 314
            +F+    + +E N++SWT +I+G      + +                         +C
Sbjct: 339 EMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPAC 398

Query: 315 ASIGALYHGIWVHVYIKKNQISIDN----------------IELAYDLFSEISEKNVYLW 358
            +I AL HG   H +  +  + +DN                I L+  +F+ +  KN+  W
Sbjct: 399 GNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            S++  ++M G A++ + +F  +  T  KPD ++F +LLSAC   GL DEG+ +    S 
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            Y IKP+++HY CMV+LLGRAG L+E+ + I  MP  PD  +W +LL +CR   NV LAE
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A + L   +P N G +VLL+NIYA  G   ++  IR K+  +GLKK  G S I+    V
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRV 637

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQ--------HRERLA 582
           +   +GD  +P  ++I   ++EI   +++ G        L +   Q        H E+LA
Sbjct: 638 YTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLA 697

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           V FGL++T + T ++++ NLRICGDCH+ +K  S    REI IRD  RFH F+ G CSC 
Sbjct: 698 VVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCG 757

Query: 643 DYW 645
           D+W
Sbjct: 758 DFW 760



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/417 (19%), Positives = 163/417 (39%), Gaps = 83/417 (19%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +   +P+  + S++++I   T   ++ + +G+ S+M + G+ PD   + +L     +L  
Sbjct: 72  VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSA 131

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            ++GK +H     S + +   +   +  MY +CG++G+A+K+  R  + + DVV  + L+
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDR--MSDKDVVTCSALL 189

Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGM----LNQDAEFKYKSCASIG-- 318
             Y +    +E  R+  EM    +E N++SW  ++SG      +++A   ++    +G  
Sbjct: 190 CAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFC 249

Query: 319 -----------------ALYHGIWVHVYIKKNQISIDNIELA---------------YDL 346
                             L  G  +H Y+ K  +  D   ++                 L
Sbjct: 250 PDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISL 309

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF---------------------------- 378
           F++       +  + I   +  G   KA+++F                            
Sbjct: 310 FNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKD 369

Query: 379 -------LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG- 430
                   EM+  G KP+ VT  ++L AC +   +  G        RV+ +     H G 
Sbjct: 370 IEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDN--VHVGS 427

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
            ++D+  + G +  S      MP   ++  W+SL+     H   K     F+ L  T
Sbjct: 428 ALIDMYAKCGRINLSQIVFNMMPT-KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 198/667 (29%), Positives = 328/667 (49%), Gaps = 93/667 (13%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++H+ ++   L +   +S  +    +  G++  A+ +  + +   +  WNS+I     NG
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274

Query: 119 YPQEVFAIYLYLVTRTVLLNK---------CGKLKEV-------CQ------LFDKLPNR 156
              E   ++  +    V L++         C  LKE+       C       LFD+    
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334

Query: 157 --------------------------DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
                                     +V+SW  MIS +       E + L S+M  +GV 
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVR 394

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           P+E T   +++A   +   E    +H  + ++  + S ++   L+D Y K GK+ EA K+
Sbjct: 395 PNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKV 450

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                ID+ D+V W+ +++GY ++ E + A ++F E+ +  +       S +LN  A   
Sbjct: 451 FS--GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA-- 506

Query: 311 YKSCASIGALYHGIWVH---------------VYIKKNQISIDNIELAYDLFSEISEKNV 355
             +    G  +HG  +                +Y KK      NIE A ++F    EK++
Sbjct: 507 TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG-----NIESAEEVFKRQREKDL 561

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W S+I+ YA  G A KA+D+F EM++   K D VTFI + +AC+H GLV+EG  +   
Sbjct: 562 VSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDI 621

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
             R   I P  +H  CMVDL  RAG LE++   I +MP P   +IW ++L ACR H+  +
Sbjct: 622 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTE 681

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           L   A + +    P +  A+VLL+N+YA++G   + +++R  + +  +KK+ GYS IE  
Sbjct: 682 LGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVK 741

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETS---------------LQHRE 579
              + F +GD  +P  ++IY+ L ++   L+  G + +TS                QH E
Sbjct: 742 NKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSE 801

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG-GQ 638
           RLA+AFGLI+T + + + I+ NLR+CGDCH  +K+ +++  REIV+RD+ RFH F   G 
Sbjct: 802 RLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGV 861

Query: 639 CSCRDYW 645
           CSC D+W
Sbjct: 862 CSCGDFW 868



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 194/408 (47%), Gaps = 43/408 (10%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           +++   +++N L    P     I LYL        KCG +++   LFDK   + V++WN+
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYL--------KCGNVRKARILFDKTEVKSVVTWNS 265

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MIS Y + G+  E LG+   M    V   E +  S+I     L++L   + LH  + +  
Sbjct: 266 MISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG 325

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARR 282
                ++   L+  Y KC  + +A +L    EI  V +VV WT ++SG+++++ ++EA  
Sbjct: 326 FLFDQNIRTALMVAYSKCTAMLDALRLFK--EIGCVGNVVSWTAMISGFLQNDGKEEAVD 383

Query: 283 LFDEM----VERNLISWTLMISGML--------NQDAEFKYKSCASIGALYHGIWVHVYI 330
           LF EM    V  N  +++++++ +          Q  +  Y+  +++G       +  Y+
Sbjct: 384 LFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTAL----LDAYV 439

Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           K     +  +E A  +FS I +K++  W++++A YA  G  + AI +F E+ + G KP++
Sbjct: 440 K-----LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNE 494

Query: 391 VTFIALLSACSH-GGLVDEGYDFLSKKSRVYNIKPKMQHYGC----MVDLLGRAGHLEES 445
            TF ++L+ C+     + +G  F       + IK ++    C    ++ +  + G++ ES
Sbjct: 495 FTFSSILNVCAATNASMGQGKQFHG-----FAIKSRLDSSLCVSSALLTMYAKKGNI-ES 548

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           A  +       D+  W+S++     H     A   FK + +     DG
Sbjct: 549 AEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 596



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 166/373 (44%), Gaps = 50/373 (13%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K    K+  ++FD++  R+V++W T+IS Y    M  E L L  +M  EG  P+  T  +
Sbjct: 140 KGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAA 199

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            +    +      G  +H  + ++ +  +  + N L+++Y KCG + +A+ L  + E+  
Sbjct: 200 ALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK- 258

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCAS 316
             VV W +++SGY  +    EA  +F          +++ ++ +   ++ F    K CA+
Sbjct: 259 -SVVTWNSMISGYAANGLDLEALGMF----------YSMRLNYVRLSESSFASVIKLCAN 307

Query: 317 IGALYHGIWVHVYIKKNQISID-NIE----LAYD----------LFSEIS-EKNVYLWTS 360
           +  L     +H  + K     D NI     +AY           LF EI    NV  WT+
Sbjct: 308 LKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTA 367

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-------HGGLVDEGYDFL 413
           +I+ +      ++A+DLF EM+  G +P++ T+  +L+A         H  +V   Y+  
Sbjct: 368 MISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYE-- 425

Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
            + S V            ++D   + G +EE+A   + +    D+  WS++L        
Sbjct: 426 -RSSTVGT---------ALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAGYAQTGE 474

Query: 474 VKLAEHAFKHLTE 486
            + A   F  LT+
Sbjct: 475 TEAAIKMFGELTK 487



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 119/299 (39%), Gaps = 71/299 (23%)

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
           +L     LFDK P RD  S+ +++  ++  G  +E   L   +   G+  D     S++ 
Sbjct: 42  RLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLK 101

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
               L D   G+ LH                       +C K G              DV
Sbjct: 102 VSATLCDELFGRQLHC----------------------QCIKFGFLD-----------DV 128

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQ 305
            + T+LV  Y+K +   + R++FDEM ERN+++WT +ISG                M N+
Sbjct: 129 SVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNE 188

Query: 306 DAE-FKYKSCASIGALY------HGIWVHVYIKKNQ---------------ISIDNIELA 343
             +   +   A++G L        G+ VH  + KN                +   N+  A
Sbjct: 189 GTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKA 248

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
             LF +   K+V  W S+I+ YA  G   +A+ +F  M     +  + +F +++  C++
Sbjct: 249 RILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 7/153 (4%)

Query: 264 WTTLVSGYVKSNERDEARRLFDEM------VERNLISWTLMISGMLNQDAEFKYKSCASI 317
           + +L+ G+ +     EA+RLF  +      ++ ++ S  L +S  L  +   +   C  I
Sbjct: 61  YISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCI 120

Query: 318 G-ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
                  + V   +    +   N +    +F E+ E+NV  WT++I+ YA      + + 
Sbjct: 121 KFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLT 180

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           LF+ M+  GT+P+  TF A L   +  G+   G
Sbjct: 181 LFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/595 (31%), Positives = 312/595 (52%), Gaps = 79/595 (13%)

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV---CQLFDKLPNRDVISWN 162
           I+  II N     + Q+ F ++        LL  C  L  +    ++F    N +V  + 
Sbjct: 51  IYAKIIRNH----HHQDPFVVF-------ELLRVCSNLNSIGYASKIFSHTQNPNVYLYT 99

Query: 163 TMI-----SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
            +I     SCY     Y +G+ L  +M    + PD   + S++ A      L+ G+ +H 
Sbjct: 100 ALIDGLVLSCY-----YTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHS 154

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV----------------DV 261
            + +  +  + S+   L+++Y KCG   +A+++       +V                D 
Sbjct: 155 QVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDT 214

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
           V WT ++ G V++ E + A  +F  M   +++   + I  +L+        +C+ +GAL 
Sbjct: 215 VCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLS--------ACSELGALQ 266

Query: 322 HGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
            G WV  Y+ K++I ++               +I+ A  +F ++ EKNV  + S+I  +A
Sbjct: 267 LGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFA 326

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
           + G + +A++LF  + + G  P  VTF+ +L+ACSHGGL + G++     ++ Y I+P++
Sbjct: 327 LHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQI 386

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +HYGCMVDLLGR G LEE+ +FI  M + PD  +  +LL AC+ H N++LAE   K L  
Sbjct: 387 EHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVA 446

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
               + G ++LL+N Y+ +G+  + + +R  +R+ G++K+ G S IE    +H+F  GD+
Sbjct: 447 CKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDL 506

Query: 547 FNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLIST 590
            +P  E+IY  L E+   L+ +G                +E +L  H ERLA+ +GLIST
Sbjct: 507 RHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLIST 566

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              TT+R+V NLR+C DCH  +K+ S +  R+IV+RD  RFH F+ G CSC DYW
Sbjct: 567 KPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 195/630 (30%), Positives = 320/630 (50%), Gaps = 55/630 (8%)

Query: 43  DVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP 102
           ++I V     +++E +++H H+ T+  +    I  ++       G L  A+++  +  E 
Sbjct: 92  NLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPER 151

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWN 162
           ++  WN      ++NGY +                   G L+E   LFD++P RD  SW 
Sbjct: 152 DVCSWNV-----MVNGYAE------------------VGLLEEARNLFDEMPERDSYSWT 188

Query: 163 TMISCYTSMGMYREGLGLLSKMG-AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
            M++ Y       E L L S M       P+  T+ S ++A   ++ +  GK +H  +  
Sbjct: 189 AMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVR 248

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
           + +     L + L+DMY KCG I EA+ +  +  I + DVV WT+++  Y KS+   E  
Sbjct: 249 AGLDSDEVLWSSLMDMYGKCGCIDEARNIFDK--IIDKDVVSWTSMIDRYFKSSRWREGF 306

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV----YIKKNQISI 337
            LF E++           SG+LN  A+    +   +G   HG    V    Y   +   I
Sbjct: 307 SLFSELIGSCERPNEYTFSGVLNACADL---TTEELGRQVHGYMTRVGFDPYSFASSSLI 363

Query: 338 D------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
           D      NIE A  +     + ++   TS+I  YA  G   +A+  F  + ++GTKPD V
Sbjct: 364 DMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHV 423

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS 451
           TF+ +LSAC+H GLV++G +F    +  +++     HY C+VDLL R+G  E+  + ++ 
Sbjct: 424 TFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSE 483

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           MP+ P   +W+S+L  C  + N+ LAE A + L + +P N   +V +ANIYA AG+ ++ 
Sbjct: 484 MPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEE 543

Query: 512 SRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL- 570
            ++R +++++G+ K+ G S  E     H F + D  +P   +I   L E+   ++++G  
Sbjct: 544 GKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYV 603

Query: 571 ---------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVT 615
                          +E  + H E+LAVAF ++ST E T I++  NLR C DCHS +K  
Sbjct: 604 PATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHSAIKFI 663

Query: 616 SQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           S++  R+I IRD+ RFH F+ GQCSCRDYW
Sbjct: 664 SKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 46/329 (13%)

Query: 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
           + RE + LL +       P   T  +LI   ++ R LE GK +H  +  S       + N
Sbjct: 71  LLREAVQLLGR----AKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWN 126

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            ++ MY KCG + +A+K+    E+ E DV  W  +V+GY +    +EAR LFDEM ER+ 
Sbjct: 127 RILGMYAKCGSLVDARKVFD--EMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDS 184

Query: 293 ISWTLMISGMLNQD------------------------AEFKYKSCASIGALYHGIWVHV 328
            SWT M++G + +D                              + A+I  +  G  +H 
Sbjct: 185 YSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHG 244

Query: 329 YIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           +I +  +  D                I+ A ++F +I +K+V  WTS+I  Y  +   ++
Sbjct: 245 HIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWRE 304

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
              LF E+  +  +P++ TF  +L+AC+     + G       +RV    P       ++
Sbjct: 305 GFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRV-GFDPYSFASSSLI 363

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWS 462
           D+  + G++E + + +   P P  VS+ S
Sbjct: 364 DMYTKCGNIESARHVVDGCPKPDLVSLTS 392


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/552 (32%), Positives = 292/552 (52%), Gaps = 52/552 (9%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           LV +  L++   KCG  K    +F+K+  +++IS+ +MI  YT    + E   L  KM +
Sbjct: 120 LVVQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLS 179

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           EG+ PD     + ++    +R+   G+ +H+ L     + +    N LV MY + G+I  
Sbjct: 180 EGIMPDIYAYAAALAVCPTIRE---GEAIHVKLGNHERR-TPVCSNALVGMYGRFGRIAS 235

Query: 247 AQKLLG--RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
           A+ +    RY+    D+  +  +++ + K ++  +A  L+ EM  RNL       + +L+
Sbjct: 236 AKWVFDGIRYK----DLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLD 291

Query: 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---NIEL------------AYDLFSE 349
                   +C+ +GAL  G  +H  +K      D   N  L            A  +F++
Sbjct: 292 --------ACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFND 343

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
              KNV+ WTS+++AY+  G +Q  ++ +  M   G  PD VTF A+ +ACSH GL DEG
Sbjct: 344 CGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEG 403

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
             +       + I P   HY CM+DLLGR G L E+   + +MP  PDV  W+ LL AC+
Sbjct: 404 LLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACK 463

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            + ++K+   A+K +TE +P + G ++L+ N+YAKAG+  D++ ++  ++  GL K  G 
Sbjct: 464 VYGDLKIGARAYKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGK 523

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ET 573
           S+IE    +H+F  GD  +P ++EI   L E+   L   G +                E 
Sbjct: 524 SMIEAQRRIHEFVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPEL 583

Query: 574 SLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
            L H ER+A+  GL+++    T+ IV NLRIC DCHSF K+ S++ +R++++RD+ RFH 
Sbjct: 584 LLFHSERMALGLGLLTSDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHI 643

Query: 634 FQGGQCSCRDYW 645
           FQ G CSC DYW
Sbjct: 644 FQRGSCSCGDYW 655



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 146/365 (40%), Gaps = 71/365 (19%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +C  + +    F ++  ++  S+  M+  Y    ++++ L L  K   E +  ++ T V+
Sbjct: 29  RCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSINEELQQNQATYVT 88

Query: 199 LISARTKLRD--LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           ++ +   L +  LE GK +H             + N L+ MY KC          G ++ 
Sbjct: 89  VLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKC----------GSFKF 138

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKYK 312
                                  A  +F++M  +NLIS+T MI    +     +A   YK
Sbjct: 139 -----------------------AAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYK 175

Query: 313 SCASIG----------------ALYHGIWVHVYI----KKNQISIDNIELAYDLFSEISE 352
              S G                 +  G  +HV +    ++  +  + +   Y  F  I+ 
Sbjct: 176 KMLSEGIMPDIYAYAAALAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIAS 235

Query: 353 ----------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
                     K++  + ++IA +A      KAI L++EME    +P+  TF ++L ACS 
Sbjct: 236 AKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSK 295

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            G + EG + + KK +  +    + +   +V++  + G   E+        +  +V  W+
Sbjct: 296 LGALTEGKE-IHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGL-KNVFTWT 353

Query: 463 SLLRA 467
           SL+ A
Sbjct: 354 SLMSA 358



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 50/188 (26%)

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------- 310
           E +  L   LV  Y +    D+A   F E+ E+N  S+ +M+      D   K       
Sbjct: 14  EKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKK 73

Query: 311 ----------------YKSCASIGALY---------HGI-------------WVHVYIKK 332
                            KSCA +G  Y         H I              +H+Y K 
Sbjct: 74  SINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAK- 132

Query: 333 NQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
                 + + A  +F ++  KN+  +TS+I AY       +A +L+ +M   G  PD   
Sbjct: 133 ----CGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYA 188

Query: 393 FIALLSAC 400
           + A L+ C
Sbjct: 189 YAAALAVC 196



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 83/184 (45%), Gaps = 22/184 (11%)

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           +I+ A   FSEI+EKN Y +  ++ AY      +KA+ LF +      + +Q T++ +L 
Sbjct: 32  SIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLK 91

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC-------MVDLLGRAGHLEESANFITS 451
           +C+H      G D+L     ++      Q +G        ++ +  + G  + +A     
Sbjct: 92  SCAH-----LGEDYLEDGKEIHR-HAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVFEK 145

Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           M  P ++  ++S+++A         A+H   +      L++G   ++ +IYA A  L   
Sbjct: 146 ME-PKNLISYTSMIQA-----YTHTAKHVEAYELYKKMLSEG---IMPDIYAYAAALAVC 196

Query: 512 SRIR 515
             IR
Sbjct: 197 PTIR 200


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 182/545 (33%), Positives = 294/545 (53%), Gaps = 45/545 (8%)

Query: 136  LLNKCGKLKEVCQLFDKLPNRDVISWNTMISC-YTSMGMYREGLGLLSKMGAEGVSPDEV 194
            +   CG   E  ++F+ +   D++SWN+++    +S     E + + S M   G++P++V
Sbjct: 520  MYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKV 579

Query: 195  TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            T V+L+SA + L  LE+GK +H  + +       ++ N L+  Y K G +   ++L    
Sbjct: 580  TFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSM 639

Query: 255  EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
                 D V W +++SGY+ +    E       M+  N +      S +LN        +C
Sbjct: 640  S-GRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLN--------AC 690

Query: 315  ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
            AS+ AL  G+ +H +  ++Q+  D                I+ A  +F+ +S+KN + W 
Sbjct: 691  ASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWN 750

Query: 360  SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
            S+I+ YA  G  +KA+++F EM+  G  PD VTF+++LSACSH GLVD G D+       
Sbjct: 751  SMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMED- 809

Query: 420  YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN---VKL 476
            + I P ++HY C++DLLGRAG L +   +I  MP+ P+  IW ++L ACR  ++   + L
Sbjct: 810  HGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDL 869

Query: 477  AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
             + A + L E +P N   +VL +N YA  GR +D ++ R  +    +KK+ G S +  G 
Sbjct: 870  GKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGD 929

Query: 537  FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---LQETSLQ-------------HRER 580
             VH F +GD  +P+++EIY  LN +   ++  G   + E +L              H E+
Sbjct: 930  GVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEK 989

Query: 581  LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
            LAVAF L  +S    IRI+ NLR+CGDCH+  +  SQ+  R+I++RD+ RFH F+ G+CS
Sbjct: 990  LAVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCS 1049

Query: 641  CRDYW 645
            C DYW
Sbjct: 1050 CGDYW 1054



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 152/345 (44%), Gaps = 31/345 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + +  ++F  L  RD +SWNT+IS     G     +     M    +SP     +S
Sbjct: 422 KCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAIS 481

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            +S+   LR L  G+ +H    +  + +  S+ N LV MY  CG   E+ ++     + E
Sbjct: 482 GLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFN--SMAE 539

Query: 259 VDVVLWTTLVSGYVKSN-ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
            D+V W +++   V S+    E+  +F  M+   L    +    +L+  +     S   +
Sbjct: 540 HDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPL---SVLEL 596

Query: 318 GALYHGIWV-HVYIKKNQISIDN-----------IELAYDLFSEIS-EKNVYLWTSVIAA 364
           G   H + + H  I+ N  ++DN           ++    LFS +S  ++   W S+I+ 
Sbjct: 597 GKQVHAVVLKHGAIEDN--AVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISG 654

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           Y   GH Q+ +D    M  +    D  TF  +L+AC+    ++ G +        + I+ 
Sbjct: 655 YIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEM-----HAFGIRS 709

Query: 425 KMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           +++        ++D+  + G ++ ++    SM    + S W+S++
Sbjct: 710 QLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFS-WNSMI 753



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 136/340 (40%), Gaps = 32/340 (9%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM----GAEGVSPDEVTMVSLISAR 203
           Q+FD  P RD+I+WN ++S Y   G       L   M     A  + P+E T  SLI+A 
Sbjct: 220 QVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITA- 278

Query: 204 TKLRDLEMGKNLHLFLEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
           T L     G    +F        S  L   + LV  + + G + EA+ +     + E + 
Sbjct: 279 TSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIF--INLKERNA 336

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
           V    L+ G VK +  +EA  +F    +  +++    +  +L+  AEF          L 
Sbjct: 337 VTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVV-LLSAVAEFSIPE----DGLM 391

Query: 322 HGIWVHVYIKKN-----QISIDN-----------IELAYDLFSEISEKNVYLWTSVIAAY 365
            G  VH +I +      +I++ N           I+ A  +F  +  ++   W ++I+  
Sbjct: 392 RGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVL 451

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
              G  + A+  +  M +    P     I+ LS+C+   L+  G        + + +   
Sbjct: 452 DQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVK-WGLDLD 510

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
                 +V + G  G   ES     SM    D+  W+S++
Sbjct: 511 TSVSNALVKMYGDCGARSESWEIFNSMA-EHDIVSWNSIM 549



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 126/311 (40%), Gaps = 41/311 (13%)

Query: 128 LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-- 184
           L+L    V L  K  +L    Q+FD +  R+ +SW  ++S Y   G+  E   +   M  
Sbjct: 91  LFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLW 150

Query: 185 -GAEGVSPDEVTMVSLISARTKLRD--LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            G+E   P   T  S++ A        L     +H  + ++    + ++ N L+ MY  C
Sbjct: 151 EGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNC 210

Query: 242 --GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN-------- 291
             G   +AQ++     +   D++ W  L+S Y K         LF  M+  +        
Sbjct: 211 SVGLPLQAQQVFDTTPVR--DLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPN 268

Query: 292 ------LISWTLM---ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL 342
                 LI+ T +    SG+L+Q      KS +S         V  + +        ++ 
Sbjct: 269 EHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGM-----LDE 323

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV----TFIALLS 398
           A D+F  + E+N      +I        +++A+ +F+     GT+   V    TF+ LLS
Sbjct: 324 AKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFM-----GTRDSFVVNTDTFVVLLS 378

Query: 399 ACSHGGLVDEG 409
           A +   + ++G
Sbjct: 379 AVAEFSIPEDG 389



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 120/276 (43%), Gaps = 56/276 (20%)

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           + LHL L +  +     L N+LV++Y K  ++  A+++     + E + V WT LVSGYV
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFD--GMLERNAVSWTCLVSGYV 133

Query: 273 KSNERDEARRLFDEMVER------------------------NLISWTLMISGMLNQDAE 308
            S   DEA R+F  M+                          +L+++ + + G++++   
Sbjct: 134 LSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIY 193

Query: 309 FKYKS-CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
               + C ++ ++Y    V + ++  Q+           F     +++  W ++++ YA 
Sbjct: 194 ASNTTVCNALISMYGNCSVGLPLQAQQV-----------FDTTPVRDLITWNALMSVYAK 242

Query: 368 AGHAQKAIDLFLEMEETGT----KPDQVTFIAL-----LSACSHGGLVDEGYDFLSKKSR 418
            G+      LF+ M    +    +P++ TF +L     LS+CS  G++D+ +      +R
Sbjct: 243 KGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCS-SGVLDQVF------AR 295

Query: 419 VYNIKPKMQHY--GCMVDLLGRAGHLEESANFITSM 452
           V         Y    +V    R G L+E+ +   ++
Sbjct: 296 VLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINL 331


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 190/615 (30%), Positives = 313/615 (50%), Gaps = 72/615 (11%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           R+C ++    ++H+   T+    D   +  +       GDL  A+++  +     +  WN
Sbjct: 118 RACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWN 177

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
            +             F  Y+          K G L    +LFD++P R+V +WN M++  
Sbjct: 178 IL-------------FGGYI----------KNGDLGGARKLFDEMPERNVATWNAMVAGL 214

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           T++G   E LG    M  EG+ PDE  + S+      LRD+  G+ +H ++  S +    
Sbjct: 215 TNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDM 274

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM- 287
            + + L  MY +CG + E + +L    +  + +V   T+++G  ++ + + A   F  M 
Sbjct: 275 CVGSSLAHMYMRCGCLQEGEAVL--RMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMR 332

Query: 288 ---VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS--IDNIEL 342
              V  +++++   IS            SC+ + AL  G  +H  + K  +   +  +  
Sbjct: 333 SVGVAADVVTFVSAIS------------SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTC 380

Query: 343 AYDLFSEI-----SEK--------NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
              ++S       SE+        + +L +++I+AY   GH QKAI+LF +M   G +P 
Sbjct: 381 LVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPS 440

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            VTF+ALL ACSH GL +EG D     ++ Y ++P ++HY C+VDLLGR+G L+E+   I
Sbjct: 441 DVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALI 500

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
            SMP+ PD  IW +LL AC+  +N  +AE   K + E DP +  ++VLL+NI A + R  
Sbjct: 501 LSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWG 560

Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           D+S +R  +RD  ++K+ G S +E  G +H+F +GD  +P  +EI   L E+   ++Q G
Sbjct: 561 DVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCG 620

Query: 570 L---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMK 613
                           +E SL  H E+LA+AF  +S  E   IR++ NLR+C DCH  +K
Sbjct: 621 YSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIK 680

Query: 614 VTSQVYNREIVIRDN 628
           + SQV  REIV+RD+
Sbjct: 681 LMSQVTGREIVVRDD 695


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 200/688 (29%), Positives = 329/688 (47%), Gaps = 106/688 (15%)

Query: 30  ISRKFANVCPVSLDVIMVER---SCSSIDEFERIHSHLITTNLMR-DPQISTQVFEFLVF 85
           +SR FA    +S    +  R       I+  +++H  ++    +R +P +  ++      
Sbjct: 7   LSRYFATARQLSFTEDLCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAA 66

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR------------ 133
            G+ G A+ I  +  +  +  +N +I + + N   ++   +Y  + T+            
Sbjct: 67  CGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCV 126

Query: 134 -----------------------------------TVLLNKCGKLKEVCQLFDKLPNRDV 158
                                                +  KC  LKE  Q+ D++P RDV
Sbjct: 127 LKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDV 186

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
           +SWN+M+S Y   G + + L L  +M A  + P++ TM SL+ A T      +     L+
Sbjct: 187 VSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNV-----LY 241

Query: 219 LEESTMKISGSLL---NYLVDMYFKCGKIGEAQKLLGRYEID--EVDVVLWTTLVSGYVK 273
           ++E  +K++   +   N ++ MY       EA  L  + E +  E DVV   +++  Y  
Sbjct: 242 VKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGD 301

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
            +     RR+      + L+   L+ + +++      Y  C  +                
Sbjct: 302 LSALSLGRRVHKFAERKKLLPNLLLENALIDM-----YAKCGCL---------------- 340

Query: 334 QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                    A  +F+++  ++V  WTS+I+AY   G  + A+ +F EM  +G  PD + F
Sbjct: 341 -------RDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAF 393

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
           +++L+ACSH GL+D+G  + +  +    I PK++H+ C+VDLLGRAG ++E+  FI  MP
Sbjct: 394 VSVLAACSHAGLLDDGRYYFNLMAEC-GITPKLEHFACVVDLLGRAGKIDEAYGFIRQMP 452

Query: 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           + PD  +W  LL ACR + N+ +   A   L   +P + G +VLL+NIYAKAGR  D++ 
Sbjct: 453 LEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAA 512

Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQE 572
           IR  +   G+KK  G S +E    VH F +GD  +P S++IY  L+ +   +++ G + E
Sbjct: 513 IRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPE 572

Query: 573 TSLQ---------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQ 617
           T                  H E+LAVAF +I+T   T IR+  NLR+CGDCH   K+ S+
Sbjct: 573 TDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISK 632

Query: 618 VYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  REI+IRD  RFH FQ G CSC DYW
Sbjct: 633 IAEREIIIRDTHRFHHFQEGCCSCGDYW 660


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/535 (33%), Positives = 281/535 (52%), Gaps = 31/535 (5%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMV 197
           K G  K+   LFD++P +D +SWN+++S    +G   E L +  KM ++  +  +E T +
Sbjct: 92  KMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFL 151

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S+ISA    +  + G  +H    +  +     ++N LV+MY K G +  A +L       
Sbjct: 152 SVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPES 211

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           E  +V W ++V+   ++   +EA   FD M           +  +L     F       +
Sbjct: 212 EKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPL---GRM 268

Query: 318 GALYHGIWVHVYIKKNQISIDNIELAYD----------LFSEISEKNVYLWTSVIAAYAM 367
             + HG+     + +N   +  +   Y           +F EIS+ +   WT+++A YAM
Sbjct: 269 VEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAM 328

Query: 368 AGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
            G  ++AI+ F  +  E G +PD VTF  LLSACSH GLV EG  F    S VY ++P++
Sbjct: 329 HGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRL 388

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
            HY CMVDLLGR G L+++   I +MP  P+  +W +LL ACR H+N+ L + A K+L  
Sbjct: 389 DHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLIA 448

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
            DP +   +++L+N+Y+ AG  +D S++R  +++  L +  G S IE G  +H+F   D 
Sbjct: 449 LDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDDY 508

Query: 547 FNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLIST 590
            +P S  I+  L E+   +Q  G + ET                 +H E++A+A+GL+ T
Sbjct: 509 THPDSHRIHKKLEEVMKKIQDVGFVHETESILHDVDEEVKIDMITKHSEKIALAYGLLVT 568

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +    + I+ NLRIC DCH+ +K  S V  R I+IRD  RFH+F GG CSC DYW
Sbjct: 569 NADMPLVIIKNLRICRDCHNTVKFVSMVEKRTIIIRDTKRFHQFSGGLCSCGDYW 623



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 132/333 (39%), Gaps = 79/333 (23%)

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM------------- 302
           +D  D  +   LVS Y+K     +A  LFDEM +++ +SW  ++SG+             
Sbjct: 75  LDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVF 134

Query: 303 --LNQDAEFKYK---------SCASIGALYHGIWVHVYIKK----NQISIDN-------- 339
             +  D+E K           +C S  A   G +VH    K     ++ + N        
Sbjct: 135 CKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGK 194

Query: 340 ---IELAYDLFSEI--SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
              +E A+ LFSE+  SEK++  W S++A  A  G   +A + F  M   G  PD  T +
Sbjct: 195 FGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMV 254

Query: 395 ALLSACS-----------HGGLVDEGYD-----------FLSKKSRVYN--------IKP 424
           +LL AC            HG +   G D             SK  R+ N         KP
Sbjct: 255 SLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKP 314

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSM----PIPPDVSIWSSLLRACRCHQNVKLAEHA 480
               +  M+      G  +E+  F   +     + PD   ++ LL AC     VK  ++ 
Sbjct: 315 DKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYF 374

Query: 481 FKHLTE---TDPLNDGAHVLLANIYAKAGRLDD 510
           F+ +++     P  D  +  + ++  + G LDD
Sbjct: 375 FRVMSDVYKVQPRLD-HYSCMVDLLGRCGLLDD 406



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 110/284 (38%), Gaps = 60/284 (21%)

Query: 42  LDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE 101
           L VI    S  + DE   +H   +   L+ + ++   V   +   G  G+ +   R   E
Sbjct: 151 LSVISACVSEKACDEGYYVHCCAMKLGLVYEVKV---VNALVNMYGKFGFVESAFRLFSE 207

Query: 102 -PE----IKIWNSIIENQLINGYPQEVFAIY----------------------------- 127
            PE    I  WNSI+     NG P E F  +                             
Sbjct: 208 MPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGR 267

Query: 128 -----------------LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT 169
                            L +VT  + L +K G+L    ++F+++   D ++W  M++ Y 
Sbjct: 268 MVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYA 327

Query: 170 SMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
             G  +E +    ++   EG+ PD VT   L+SA +    ++ GK     + +   K+  
Sbjct: 328 MHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSD-VYKVQP 386

Query: 229 SLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
            L +Y  +VD+  +CG + +A +L+      E +  +W  L+  
Sbjct: 387 RLDHYSCMVDLLGRCGLLDDAHELIKNMPF-EPNSGVWGALLGA 429


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 194/625 (31%), Positives = 322/625 (51%), Gaps = 76/625 (12%)

Query: 86  TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL-----VTRTVLLN-- 138
            G++  A+++     E  +  W ++++  + NG      +++  +     V+ TV+L   
Sbjct: 92  NGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGF 151

Query: 139 -KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            + G++ + C+L++ +P++D I+  +MI      G   E   +  +M    V    +T  
Sbjct: 152 LQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV----ITWT 207

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++++   +   ++  + +   + E T     S+L      Y + G+I +A++L   +E+ 
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMG----YVQNGRIEDAEEL---FEVM 260

Query: 258 EVD-VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-----SG---------- 301
            V  V+    ++SG  +  E  +ARR+FD M ERN  SW  +I     +G          
Sbjct: 261 PVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFI 320

Query: 302 -MLNQDAEFKYKS-------CASIGALYHGIWVHVYIKKNQISID--------------- 338
            M  Q     + +       CAS+ +L+HG  VH  + + Q  +D               
Sbjct: 321 LMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCG 380

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALL 397
            +  +  +F     K++ +W S+I+ YA  G  ++A+ +F EM  +G TKP++VTF+A L
Sbjct: 381 ELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATL 440

Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
           SACS+ G+V+EG         V+ +KP   HY CMVD+LGRAG   E+   I SM + PD
Sbjct: 441 SACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPD 500

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
            ++W SLL ACR H  + +AE   K L E +P N G ++LL+N+YA  GR  D++ +R  
Sbjct: 501 AAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKL 560

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDI-FNPHSEEIYLMLNEIEMTLQQQGLQE---- 572
           ++   ++K  G S  E    VH FT G I  +P  E I  +L+E++  L++ G       
Sbjct: 561 MKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSY 620

Query: 573 -----------TSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                       SL+ H ERLAVA+ L+  SE   IR++ NLR+C DCH+ +K+ S+V  
Sbjct: 621 ALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKE 680

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           REI++RD  RFH F+ G+CSC+DYW
Sbjct: 681 REIILRDANRFHHFRNGECSCKDYW 705



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 150/338 (44%), Gaps = 60/338 (17%)

Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
           R   L++ GK+ E  +LFD   ++ + SWN+M++ Y +  M R+   L  +M      PD
Sbjct: 23  RITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM------PD 76

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
                ++IS                              N LV  Y K G+I EA+K+  
Sbjct: 77  R----NIIS-----------------------------WNGLVSGYMKNGEIDEARKVFD 103

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAE 308
              + E +VV WT LV GYV + + D A  LF +M E+N +SWT+M+ G L      DA 
Sbjct: 104 L--MPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDAC 161

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
             Y+       +     +H   K+ +     ++ A ++F E+SE++V  WT+++  Y   
Sbjct: 162 KLYEMIPDKDNIARTSMIHGLCKEGR-----VDEAREIFDEMSERSVITWTTMVTGYGQN 216

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
                A  +F  M E      +V++ ++L      G +++  +       V  +KP +  
Sbjct: 217 NRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRIEDAEELF----EVMPVKPVIA- 267

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
              M+  LG+ G + ++     SM    D S W ++++
Sbjct: 268 CNAMISGLGQKGEIAKARRVFDSMKERNDAS-WQTVIK 304



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 50/259 (19%)

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           S S  N +V  YF      +A+KL    E+ + +++ W  LVSGY+K+ E DEAR++FD 
Sbjct: 47  SISSWNSMVAGYFANLMPRDARKLFD--EMPDRNIISWNGLVSGYMKNGEIDEARKVFDL 104

Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346
           M ERN++SWT ++ G ++                                   +++A  L
Sbjct: 105 MPERNVVSWTALVKGYVHN--------------------------------GKVDVAESL 132

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F ++ EKN   WT ++  +   G    A  L+    E     D +   +++      G V
Sbjct: 133 FWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY----EMIPDKDNIARTSMIHGLCKEGRV 188

Query: 407 DEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           DE    +D +S++S +         +  MV   G+   ++++      MP   +VS W+S
Sbjct: 189 DEAREIFDEMSERSVIT--------WTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTS 239

Query: 464 LLRACRCHQNVKLAEHAFK 482
           +L     +  ++ AE  F+
Sbjct: 240 MLMGYVQNGRIEDAEELFE 258



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 50/252 (19%), Positives = 106/252 (42%), Gaps = 29/252 (11%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P  + ++ V  S +S+   +++H+ L+      D  +++ +    +  G+L  ++ I  +
Sbjct: 332 PTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDR 391

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYL----------VTRTVLLNKC---GKLKE 145
               +I +WNSII     +G  +E   ++  +          VT    L+ C   G ++E
Sbjct: 392 FPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEE 451

Query: 146 VCQLFDKLPNRDVISWNTMISCYTSM-------GMYREGLGLLSKMGAEGVSPDEVTMVS 198
             ++++ + +  V     + + Y  M       G + E + ++  M  E   PD     S
Sbjct: 452 GLKIYESMES--VFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVE---PDAAVWGS 506

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK---IGEAQKLLGRYE 255
           L+ A      L++ +     L E   + SG+ +  L +MY   G+   + E +KL+    
Sbjct: 507 LLGACRTHSQLDVAEFCAKKLIEIEPENSGTYI-LLSNMYASQGRWADVAELRKLMKTRL 565

Query: 256 IDEVDVVLWTTL 267
           + +     WT +
Sbjct: 566 VRKSPGCSWTEV 577


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 183/546 (33%), Positives = 284/546 (52%), Gaps = 35/546 (6%)

Query: 130 LVTRTV-LLNKCGKLKEVCQLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           L TR V L   CG +    +LFD++PN+ +V  WN +I  Y   G     + L  +M A 
Sbjct: 100 LATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLAC 159

Query: 188 G-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
           G + PD  T   ++ A   L DL  G+ +H  +  ++      +   L+DMY KCG + E
Sbjct: 160 GSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDE 219

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A  +     +   D V+W ++++   ++    EA  L   M    +      I  +++  
Sbjct: 220 AWAVFDSTTVR--DAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAP---TIVTLVSAI 274

Query: 307 AEFKYKSCASIGALYHGI-WVHVYIKKNQISIDNIEL---------AYDLFSEISEKNVY 356
           +          G   HG  W   +  ++++    +++         A  LF ++  + + 
Sbjct: 275 SAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELI 334

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
            W ++I  + M GHA  A +LF  M  E    PD +TF+ +LSAC+HGG+V E  +    
Sbjct: 335 SWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDL 394

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
              VY+IKP +QHY C+VD+LG +G  +E+++ I  M + PD  IW +LL  C+ H+NV+
Sbjct: 395 MVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVE 454

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           LAE A   L E +P + G +VLL+NIYA++G+ ++ +R+R  + + GLKK +  S IE  
Sbjct: 455 LAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELK 514

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRE 579
           G  H F  GD  +P S+EIY  L  +E  + Q G    +                  H E
Sbjct: 515 GKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSE 574

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           RLA+AFGLIST   T + +  NLR+C DCH  +K+ SQ+  REI+IRD  R+H F  G+C
Sbjct: 575 RLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGEC 634

Query: 640 SCRDYW 645
           SC+D+W
Sbjct: 635 SCKDHW 640



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 31/208 (14%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           R +  G+ LH  L  S + +   L   LVD+Y  CG +  A++L      ++ +V LW  
Sbjct: 77  RAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMP-NQGNVFLWNV 135

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYH 322
           L+  Y +   R+ A  L+ EM          +  G +  D  F Y    K+CA++  L  
Sbjct: 136 LIRAYARDGPREAAIELYREM----------LACGSMEPD-NFTYPPVLKACAALLDLGA 184

Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  VH  + +   + D                ++ A+ +F   + ++  +W S+IAA   
Sbjct: 185 GREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQ 244

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIA 395
            G   +A+ L   M   G  P  VT ++
Sbjct: 245 NGRPAEALALCRNMAAEGIAPTIVTLVS 272


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 170/525 (32%), Positives = 284/525 (54%), Gaps = 32/525 (6%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            LFD++P  D +S+N +I+ Y   G Y +   L  ++             +++S      
Sbjct: 300 NLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIEL 359

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           +L MG+  H     +T      + N LVDMY KC K  +A ++     +   + V WT +
Sbjct: 360 NLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFA--NLAYRNSVPWTAI 417

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           +S YV+    +EA ++F EM   N+       +  L   A     +  S+G   H   + 
Sbjct: 418 ISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANL---ASVSLGKQLHSSVIR 474

Query: 328 VYIKKNQIS----ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           + +  +  S    +D      +++ A ++F E+ ++N+  W ++I+AY+  G A+     
Sbjct: 475 LGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSS 534

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M E+G  PD V+F+++L+ACSH GLV++   + +  ++VY + P+ +HY  M+D+L 
Sbjct: 535 FADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLC 594

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHV 496
           R+G   E+ N I+ MP  PD  +WSS+L +CR H+N  LA+ A   L + D L D  A+V
Sbjct: 595 RSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYV 654

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
            ++NIYA+AG+ ++ ++++  +R+ G+KK   YS +E    VH FT+ D  +P +E+I  
Sbjct: 655 NMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRR 714

Query: 557 MLNEIEMTLQQQGLQ----------------ETSLQHRERLAVAFGLISTSEKTTIRIVN 600
            +N +   + ++G +                E+   H ERLA+AF LI+T E + I I+ 
Sbjct: 715 KINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMK 774

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR C DCH+ +KV S++  REI +RD+ RFH F+ G CSC DYW
Sbjct: 775 NLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 104/473 (21%), Positives = 191/473 (40%), Gaps = 51/473 (10%)

Query: 88  DLGYAQQIIRQGDEPEIKIWNSIIE-----NQLINGYPQEVFAIYLYLVTRTVLLNKCGK 142
           D+    +I++ G +PEI  +N  ++     NQ+     +++F    Y  T +V +   G 
Sbjct: 30  DIPVDARIVKTGFDPEISRFNFKLKDLVRANQIAKA--RQLFDEMPYRNTSSVNMMVSGY 87

Query: 143 LKE-----VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           +K        +LF+ + +R+ +SW  MI  Y+     +E   L ++M   GV PD +T  
Sbjct: 88  VKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFA 147

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +L+S       L+    +H  +       S  + N LVD Y K   +  A +L    E+ 
Sbjct: 148 TLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFS--EMP 205

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML-----NQDAEFKYK 312
             D V +  +++GY K   R+EA +LF +M   +        + ML     ++D  F   
Sbjct: 206 TKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIF--- 262

Query: 313 SCASIGALYHGIWVH------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVI 362
                G   HG+ +       +++    +      D I+LA +LF E+ E +   +  +I
Sbjct: 263 -----GQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIII 317

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             YA  G  +K+ DLF  ++ T        F  +LS  +    +  G      ++ V   
Sbjct: 318 TGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQ-THAQAVVTTA 376

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
             ++Q    +VD+  +    E++     ++     V  W++++     +      E A K
Sbjct: 377 VSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVP-WTAII---SIYVQKGFHEEALK 432

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
              E +           N++          +    L  + L KQL  S+I  G
Sbjct: 433 MFKEMNR---------ENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLG 476


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 292/541 (53%), Gaps = 27/541 (4%)

Query: 129 YLVTRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           YL  R +L++ KCG + +  +LFD++P ++++SWNT+I      G Y E   L   M  +
Sbjct: 167 YLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQD 226

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
                    V++I A   L  +  G+ LH    ++ +     +   L+DMY KCG I +A
Sbjct: 227 FSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDA 286

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGML 303
           Q +    ++ E   V W ++++GY      +EA  ++ EM    V+ +  +++++I  + 
Sbjct: 287 QCVFD--QMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIR-IC 343

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWT 359
            + A  ++   A  G + HG  + +      + +      IE A  +F  +  KNV  W 
Sbjct: 344 ARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWN 403

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++IA Y   G   +A+++F  M   G  P+ VTF+A+LSACS+ GL D G++     SR 
Sbjct: 404 ALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRD 463

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           + IKP+  HY CM++LLGR G L+E+   I   P  P V++W++LL ACR H+N +L + 
Sbjct: 464 HKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKF 523

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A + L    P     +V+L NIY ++GRL++ + +   L+  GL+     S IE     +
Sbjct: 524 AAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPY 583

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQHRERLAVA 584
            F SGD  +  S+EIY  L+E+ + + + G                +   L H E+LA+A
Sbjct: 584 GFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQEERVLLYHSEKLAIA 643

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI+TS+ T ++IV + RICGDCHS +K+ + V  REIV+RD  RFH F+ G CSC DY
Sbjct: 644 FGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDY 703

Query: 645 W 645
           W
Sbjct: 704 W 704


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 178/541 (32%), Positives = 289/541 (53%), Gaps = 41/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  +CG   +  + F  +P  DVI W+ MIS +   G   + L +  +M    V P++ T
Sbjct: 191 LYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFT 250

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             S++ A   +  L++ K +H    ++ +     + N L+  Y KCG I ++ +L     
Sbjct: 251 FSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELF--EA 308

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + + + V W T++  YV+  + + A  LF  M+   + +  +  S +L        ++CA
Sbjct: 309 LSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSIL--------RACA 360

Query: 316 SIGALYHGIWVHVYIKKN----QISIDN-----------IELAYDLFSEISEKNVYLWTS 360
           ++ AL  G+ VH    K      +++ N           I+ A  +F  +  ++   W +
Sbjct: 361 TLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNA 420

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I  Y+M G   +AI +F  M+ET  KPD++TF+ +LSACS+ G +DEG  + +   + Y
Sbjct: 421 IICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDY 480

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I+P M+HY CMV L+GR+G+L+++  FI  +P  P V IW +LL AC  H +V+L   +
Sbjct: 481 GIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRIS 540

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + + E +P ++ +HVLL+NIYA+A R  +++ +R  ++  G+KK+ G S IE  G VH 
Sbjct: 541 AQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHC 600

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG----LQETSLQ------------HRERLAVA 584
           FT  D  +   + I  ML  + M  ++ G    L    L             H ERLA+A
Sbjct: 601 FTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALA 660

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGL+       IRI+ NLRIC DCHS +K+ S++  R+I++RD  RFH F+ G CSC DY
Sbjct: 661 FGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADY 720

Query: 645 W 645
           W
Sbjct: 721 W 721



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 177/373 (47%), Gaps = 16/373 (4%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD++ ++D++SW  MI+ Y     + E L   S+M   G  P+  T   ++ A   L+
Sbjct: 102 EVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQ 161

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           + + GK +H  + ++  +    +   L+++Y +CG   +A +  G  ++ + DV+ W+ +
Sbjct: 162 NFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFG--DMPKNDVIPWSFM 219

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI---GALYHGI 324
           +S + +S + ++A  +F +M    +I      S +L   A+ +    +      AL  G+
Sbjct: 220 ISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGL 279

Query: 325 WVHVYIKKNQIS----IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
              V++    ++       IE + +LF  +S++N   W ++I +Y   G  ++A+ LF  
Sbjct: 280 STDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSN 339

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDF--LSKKSRVYNIKPKMQHYGCMVDLLGR 438
           M     +  +VT+ ++L AC+    ++ G     L+ K+ +Y     + +   ++D+  +
Sbjct: 340 MLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKT-IYGQDVAVGN--ALIDMYAK 396

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG-AHVL 497
            G +++ A F+  M    D   W++++     H     A   F  + ET    D    V 
Sbjct: 397 CGSIKD-ARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVG 455

Query: 498 LANIYAKAGRLDD 510
           + +  +  GRLD+
Sbjct: 456 VLSACSNTGRLDE 468



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 149/336 (44%), Gaps = 35/336 (10%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
           +FD++P R+ +S+ T+I  Y     + E   L +++  EG   +     +++     +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
            E+G+ +H  + +     +  +   L+D Y   G +  A+++    EI   D+V WT ++
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFD--EISSKDMVSWTGMI 119

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           + Y +++   EA   F +M            +G+L        K+C  +     G  VH 
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVL--------KACLGLQNFDAGKTVHC 171

Query: 329 YIKKNQ------ISIDNIEL---------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
            + K        + +  +EL         A+  F ++ + +V  W+ +I+ +A +G ++K
Sbjct: 172 SVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEK 231

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH----Y 429
           A+++F +M      P+Q TF ++L A +    +D     LSK    + +K  +       
Sbjct: 232 ALEIFCQMRRAFVIPNQFTFSSVLQASADIESLD-----LSKTIHGHALKAGLSTDVFVS 286

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
             ++    + G +E+S     ++    DVS W++++
Sbjct: 287 NALMACYAKCGCIEQSMELFEALSDRNDVS-WNTII 321



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 115/297 (38%), Gaps = 58/297 (19%)

Query: 34  FANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           F++V   S D+        S+D  + IH H +   L  D  +S  +       G +  + 
Sbjct: 251 FSSVLQASADI-------ESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSM 303

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLN------ 138
           ++     +     WN+II + +  G  +   +++  +         VT + +L       
Sbjct: 304 ELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLA 363

Query: 139 --------------------------------KCGKLKEVCQLFDKLPNRDVISWNTMIS 166
                                           KCG +K+   +FD L  RD +SWN +I 
Sbjct: 364 ALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIIC 423

Query: 167 CYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
            Y+  G+  E + + + M      PDE+T V ++SA +    L+ GK     +++    I
Sbjct: 424 GYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQD-YGI 482

Query: 227 SGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
              + +Y  +V +  + G + +A K +      E  V++W  L+   V  N+ +  R
Sbjct: 483 EPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPF-EPSVMIWRALLGACVIHNDVELGR 538


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 176/496 (35%), Positives = 284/496 (57%), Gaps = 43/496 (8%)

Query: 184 MGAEGVSPDEVTMVSLISA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           M  EGV PD++  V+ ++A    L DL +GK +H  + E+ ++ +  +   LV+MY K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---------ERNLI 293
            + EA ++     ++  D+V WT L+S Y + +   EA +LF EM          +R+  
Sbjct: 61  CLDEATRVF--RGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYF 118

Query: 294 SWTLMISGMLNQDAEFKY-----KSC---ASIGALYHGIWVHVYIKKNQISIDNIELAYD 345
           ++ L     L+  AE +      + C   +S G L  GI +++Y K       N+  A++
Sbjct: 119 AFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGI-INMYGK-----CGNLRAAHE 172

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  +SE++   WT++I+ YA  GH+++++ +F  M++ G+KPD V+ + +LS CSH GL
Sbjct: 173 VFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGL 232

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           V++G+DF    ++ + ++P  +HYGCM+DLLGR+G LE +   I  MP       W+  L
Sbjct: 233 VEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFL 292

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            AC+ H + +  + A + + E +P+   A+V L+NIYA AG  D + R+R  ++ MGL+K
Sbjct: 293 AACKVHSDTERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQK 351

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ-------- 576
             G S IE    VH+F +GD  +P + EIY +L  +   ++  G + +T L         
Sbjct: 352 DPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQ 411

Query: 577 -------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
                  H E+LA+AFGL+ST   +++RI+ NLR+CGDCH+  K  S++  REI +RD+ 
Sbjct: 412 KERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQ 471

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH FQ G CSC DYW
Sbjct: 472 RFHHFQDGHCSCGDYW 487



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--- 184
           V  T L+N   K G L E  ++F  L  +D++SW  ++S Y+   +YRE L L  +M   
Sbjct: 47  VVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLH 106

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-LVDMYFKCGK 243
           G +G  PD      L+ A   L     G+  H  ++E     S  +L   +++MY KCG 
Sbjct: 107 GLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGN 166

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           +  A ++     + E D V WTT++SGY      +E+  +F  M
Sbjct: 167 LRAAHEVFD--GMSERDTVAWTTIISGYAHHGHSEESLLMFWRM 208



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 75/155 (48%), Gaps = 2/155 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG L+   ++FD +  RD ++W T+IS Y   G   E L +  +M  +G  PD V+
Sbjct: 160 MYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVS 219

Query: 196 MVSLISARTKLRDLEMGKNLHL-FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           ++ ++S  +    +E G +  L   +E  ++        ++D+  + G +  A+ ++ R 
Sbjct: 220 LLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRM 279

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
              +   + W   ++     ++ +  +R  ++++E
Sbjct: 280 PF-QATAMNWAIFLAACKVHSDTERGKRAAEKVLE 313


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 191/612 (31%), Positives = 304/612 (49%), Gaps = 95/612 (15%)

Query: 128 LYLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +Y+    V++  KCG L+E   +F+  P ++V SW  +I+     G  +E L L  +M  
Sbjct: 69  VYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLK 128

Query: 187 EGVSPDEVTMVSLISARTKLRD-LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
           +G+ P  V+  + I+A +   + L  G+ LH  L     + +      LV MY KCG + 
Sbjct: 129 QGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLE 188

Query: 246 E-------------------------------AQKLLGRYEIDEV----DVVLWTTLVSG 270
           E                               A + L +  ++ +    DVV+ TTLV+ 
Sbjct: 189 ESMRTFESMTEPNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSDVVVGTTLVNM 248

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-------------------- 310
           Y K +   +A   F ++ E N+I+W ++IS  + Q   FK                    
Sbjct: 249 YAKCSGLHDANAAFVKLQEPNIITWNVLISAYV-QHCCFKEAMELFRRMLLLGLEMDEVT 307

Query: 311 ----YKSCASIGALYHGIWVHVYIKK-----NQISIDNIEL-----------AYDLFSEI 350
                 +C    AL  G  +H  +++     N   ++N+ L           A  +F  +
Sbjct: 308 FINILGACCVPVALEDGRAIHACVREHPLASNHAPLENVILNMYGKCGSLQDAEAMFKSM 367

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA-CSHGGLVDEG 409
           S+ +V  W ++IAAY   GH  +A+  +  M+E G  PD  T+++++ A C++ GL +E 
Sbjct: 368 SQPDVIAWNTMIAAYGQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDASCANAGLPEEA 427

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
           + +     + + ++P   HYGCMV+ LG+AG L ++   I  MP  PDV  W+S L  CR
Sbjct: 428 HAYFVSMQQDHGVRPGGGHYGCMVESLGKAGRLSDAETLIQCMPFEPDVLTWTSFLANCR 487

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            H ++K  + A K     DP     +V LA I+A AG   + SRIR  + D G++K  G 
Sbjct: 488 SHGDMKRGKLAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGR 547

Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------QETSL 575
           S+I+ G  V++FT+GD  NP S+EI+  L  ++  ++  G               Q+  L
Sbjct: 548 SIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKSAGYDPDMAHVAHDVEAGQKEPL 607

Query: 576 --QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
              H ERLA+AFG+ISTS  T +RI+ NLR+CGDCH+  K+TS++  REI++RD+ RFH 
Sbjct: 608 LFAHSERLAIAFGIISTSPGTPLRIMKNLRVCGDCHTMTKLTSKITRREIIVRDSNRFHH 667

Query: 634 FQGGQCSCRDYW 645
           F+ G CSC+D+W
Sbjct: 668 FKNGSCSCKDFW 679


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 294/540 (54%), Gaps = 34/540 (6%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           +  L++ G ++  C +F ++       +NTMI    +     E L L  +M   G+ PD 
Sbjct: 72  SCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDN 131

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T   ++ A + L  L+ G  +H  +  + +++   + N L+ MY KCG I  A  +   
Sbjct: 132 FTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFE- 190

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE--RNLISWTLMISGMLNQDAEFKY 311
            ++DE  V  W++++  +       E   L  +M    R+    ++++S +    +   +
Sbjct: 191 -QMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSAL----SACTH 245

Query: 312 KSCASIGALYHGIWV------HVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSV 361
               ++G   HGI +      +V +K + I +     ++E    +F  ++ KN Y +T +
Sbjct: 246 LGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVM 305

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           IA  A+ G  ++A+ +F +M E G  PD V ++ +LSACSH GLV EG+   ++    + 
Sbjct: 306 IAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHM 365

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           IKP +QHYGCMVDL+GRAG L+E+ + I SMPI P+  +W SLL AC+ H N+++ E A 
Sbjct: 366 IKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAA 425

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
            ++ + +  N G +++LAN+YA+A +  +++RIR ++ +  L +  G+SL+E    V+KF
Sbjct: 426 DNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKF 485

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAF 585
            S D   P  E IY M+ ++E  L+ +G      Q                H ++LA+AF
Sbjct: 486 VSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAF 545

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            LI TSE + +RI  NLR+C DCH++ K  S +Y REI +RD+ RFH F+ G CSC+DYW
Sbjct: 546 ALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 170/403 (42%), Gaps = 80/403 (19%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQGDEPEIKI 106
           + C S++EF+++H+H++   L  D    + +      +  G + YA  I RQ +EP    
Sbjct: 39  KRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFE 98

Query: 107 WNSIIENQLINGYPQEVFAIYLYLVTRTV------------------------------- 135
           +N++I   + +   +E   +Y+ ++ R +                               
Sbjct: 99  YNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVF 158

Query: 136 ----------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
                           +  KCG ++    +F+++  + V SW+++I  + S+ M+ E L 
Sbjct: 159 NAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 218

Query: 180 LLSKMGAEGVS-PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
           LL  M  EG    +E  +VS +SA T L    +G+ +H  L  +  +++  +   L+DMY
Sbjct: 219 LLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMY 278

Query: 239 FKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297
            KCG +   +K L  ++ +   +   +T +++G        EA R+F +M+E  L    +
Sbjct: 279 VKCGSL---EKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDV 335

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYL 357
           +  G+L+        +C+  G +  G      ++               F  + +  +  
Sbjct: 336 VYVGVLS--------ACSHAGLVKEGFQCFNRMQ---------------FEHMIKPTIQH 372

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           +  ++     AG  ++A DL   M     KP+ V + +LLSAC
Sbjct: 373 YGCMVDLMGRAGMLKEAYDLIKSMP---IKPNDVVWRSLLSAC 412


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 285/546 (52%), Gaps = 40/546 (7%)

Query: 131 VTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
           V  T  L+    +   C +F +L       +NTMI  Y +   +   + L + M    V 
Sbjct: 70  VLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVE 129

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD  T   ++ A  +L  ++ G  +H  + +  ++    + N L++MY KC  I  +  +
Sbjct: 130 PDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAI 189

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
             R E  +  V  W+ +++ +       E   LF++M       W    S ++N      
Sbjct: 190 FRRME--QKSVASWSAIIAAHASLAMWWECLALFEDMSREG--CWRAEESILVN-----V 240

Query: 311 YKSCASIGALYHGIWVHVYIKKN---------------QISIDNIELAYDLFSEISEKNV 355
             +C  +GA + G   H  + KN                +   +++    LF  ++ KN 
Sbjct: 241 LSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQ 300

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             ++ +I+   + G+ ++A+ +F EM E G +PD VT++++LSACSH GLVDEG D   K
Sbjct: 301 LSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDK 360

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
               Y I+P MQHYGCMVDL GRAG LEE+   + SMPI  +  +W SLL AC+ H N+K
Sbjct: 361 MKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLK 420

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           L E A ++L      N   +++L+N+YA+A + ++ ++IR K+ + GL +  GYSL+E  
Sbjct: 421 LGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVK 480

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRE 579
             V+KF S D     S  IY M++++E  L+ +G    + Q                H +
Sbjct: 481 SKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQ 540

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           +LA+AF LI TS+ + IRI+ NLR+C DCHS+ K+ S +Y REI +RD  RFH F+ G C
Sbjct: 541 KLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYEREITVRDRNRFHHFKDGNC 600

Query: 640 SCRDYW 645
           SCRDYW
Sbjct: 601 SCRDYW 606


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 183/553 (33%), Positives = 288/553 (52%), Gaps = 52/553 (9%)

Query: 128  LYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM-GMYREGLGLLSKMGA 186
            L L   T  +N+C K+      F ++P  D +SWN+ I           + L    +M  
Sbjct: 599  LTLYAETDSINECQKV------FFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQ 652

Query: 187  EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
             G  P+ VT +++++A +    L +G  +H  + + ++    ++ N L+  Y KC ++ +
Sbjct: 653  AGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMED 712

Query: 247  AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
             + +  R   +  D V W +++SGY+ S    +A  L   M++R         + +L+  
Sbjct: 713  CEIIFSRMS-ERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLS-- 769

Query: 307  AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
                  +CAS+  L  G+ VH    +  +  D                I+ A   F  + 
Sbjct: 770  ------ACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMP 823

Query: 352  EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
             +N+Y W S+I+ YA  GH QKA+ +F  M++ G  PD VTF+ +LSACSH GLVDEGY 
Sbjct: 824  VRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYK 883

Query: 412  FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
                   VY + P+++H+ CMVDLLGRAG +++  +FI +MP+ P++ IW ++L AC C 
Sbjct: 884  HFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGAC-CR 942

Query: 472  ---QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
               +N +L + A K L E +P N   +VLL+N++A  G  +D+   R+ +R   +KK  G
Sbjct: 943  ANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAG 1002

Query: 529  YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ----------- 576
             S +     VH F +GD  +P  E+IY  L E+   ++  G + ET              
Sbjct: 1003 CSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEE 1062

Query: 577  ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
                H E+LA+AF L   SE   IRI+ NLR+CGDCH+  K  S++  R+I++RD+ RFH
Sbjct: 1063 LLSYHSEKLAIAFVLTRKSE-LPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFH 1121

Query: 633  RFQGGQCSCRDYW 645
             F GG CSC DYW
Sbjct: 1122 HFGGGMCSCGDYW 1134



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 176/400 (44%), Gaps = 23/400 (5%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KC  +   C +F  +P++D +SWN+MIS       + E +     M   G+ P   +
Sbjct: 500 MYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFS 559

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           ++S +S+ + L  L +G+ +H    +  + +  S+ N L+ +Y +   I E QK+   ++
Sbjct: 560 VISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVF--FQ 617

Query: 256 IDEVDVVLWTTLVSGYVKSNERD-EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
           + E D V W + +    K      +A + F EM++     W       +N  A     S 
Sbjct: 618 MPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQ---AGWRPNRVTFINILAAVSSFSV 674

Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYD-----------LFSEISE-KNVYLWTSVI 362
             +G   H + +  Y   +  +I+N  LA+            +FS +SE ++   W S+I
Sbjct: 675 LGLGHQIHAL-ILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMI 733

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           + Y  +G   KA+DL   M + G K D  TF  +LSAC+    ++ G +  +   R   +
Sbjct: 734 SGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRAC-L 792

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +  +     +VD+  + G ++ ++ F   MP+  ++  W+S++     H + + A   F 
Sbjct: 793 ESDVVVGSALVDMYAKCGKIDYASRFFELMPV-RNIYSWNSMISGYARHGHGQKALKIFT 851

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
            + +     D  HV    + +    +  +       + MG
Sbjct: 852 RMKQHGQSPD--HVTFVGVLSACSHVGLVDEGYKHFKSMG 889



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 105/502 (20%), Positives = 192/502 (38%), Gaps = 103/502 (20%)

Query: 49  RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
           ++ SS+ +   +H  L  T    D      +    V  G+L  A+++  +  +  +  W+
Sbjct: 151 KTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWS 210

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLN------------KCGKL---------KEVC 147
            +I     N  P E  +++  +++  +L N            +CG             +C
Sbjct: 211 CLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFIC 270

Query: 148 QL-----------------------------FDKLPNRDVISWNTMISCYTSMGMYREGL 178
           +L                             FD++  R+ ++WN++IS Y   G      
Sbjct: 271 KLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAF 330

Query: 179 GLLSKMGAEGVS----PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
            L S M  EGV     P+E T+ SL++A   L D  +     + LE+   +I  S   +L
Sbjct: 331 KLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGL-----VLLEQMLTRIEKS--GFL 383

Query: 235 VDMYFKCGKIG--------EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
            D+Y     +         +  K++ +   D  + V    L+ G  + ++ +EA ++F E
Sbjct: 384 RDLYVGSALVNGFARYGLMDCAKMIFKQMYDR-NAVTMNGLMVGLARQHQGEEAAKVFKE 442

Query: 287 M---VERNLISWTLMISGM--LNQDAEFKYKSCASIGALYHGIWVHVYIKKN-----QIS 336
           M   VE N  S  +++S     +   E K K          G  VH Y+ ++     +IS
Sbjct: 443 MKDLVEINSESLVVLLSTFTEFSNLKEGKRK----------GQEVHAYLFRSGLVDARIS 492

Query: 337 IDN-----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
           I N           I+ A  +F  +  K+   W S+I+        ++A+  F  M+  G
Sbjct: 493 IGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNG 552

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
             P   + I+ LS+CS  G +  G     +  + + +   +     ++ L      + E 
Sbjct: 553 MVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFK-WGLDLDVSVSNALLTLYAETDSINEC 611

Query: 446 ANFITSMPIPPDVSIWSSLLRA 467
                 MP    VS W+S + A
Sbjct: 612 QKVFFQMPEYDQVS-WNSFIGA 632



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 144/332 (43%), Gaps = 48/332 (14%)

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
             +LHL L ++         N L+++Y + G +  A+KL    E+ + ++V W+ L+SGY
Sbjct: 159 ANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFD--EMPQKNLVSWSCLISGY 216

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
            ++   DEA  LF  ++   L+     +   L        + C S G +  G+ +H +I 
Sbjct: 217 TQNRMPDEACSLFKGVISSGLLPNHFAVGSALR-----ACQQCGSTG-IKLGMQIHAFIC 270

Query: 332 KNQISID----------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           K     D                +I+ A+ +F EI  +N   W S+I+ Y   G A  A 
Sbjct: 271 KLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAF 330

Query: 376 DLF--LEME--ETGTKPDQVTFIALL-SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
            LF  ++ME  E   +P++ T  +L+ +ACS   L D G   L +      +  +++  G
Sbjct: 331 KLFSVMQMEGVELNLRPNEYTLCSLVTAACS---LADCGLVLLEQ------MLTRIEKSG 381

Query: 431 CMVDL---------LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            + DL           R G ++ +      M     V++   ++   R HQ  + A+  F
Sbjct: 382 FLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAK-VF 440

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
           K + +   +N  + V+L + + +   L +  R
Sbjct: 441 KEMKDLVEINSESLVVLLSTFTEFSNLKEGKR 472



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 154/351 (43%), Gaps = 40/351 (11%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L  C K+     +F ++ +R+ ++ N ++          E   +  +M  + V  +  ++
Sbjct: 401 LMDCAKM-----IFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESL 454

Query: 197 VSLISARTKLRDLEMGKN----LHLFLEESTMKISG-SLLNYLVDMYFKCGKIGEAQKLL 251
           V L+S  T+  +L+ GK     +H +L  S +  +  S+ N LV+MY KC  I  A  + 
Sbjct: 455 VVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVF 514

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNER-DEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
               +   D V W +++SG +  NER +EA   F  M    ++     +   L+      
Sbjct: 515 QL--MPSKDTVSWNSMISG-LDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLS------ 565

Query: 311 YKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNV 355
             SC+S+G L  G  +H           V +    +++    D+I     +F ++ E + 
Sbjct: 566 --SCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQ 623

Query: 356 YLWTSVIAAYA-MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
             W S I A A       +A+  FLEM + G +P++VTFI +L+A S   ++  G+   +
Sbjct: 624 VSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHA 683

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
              + Y++         ++   G+   +E+     + M    D   W+S++
Sbjct: 684 LILK-YSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMI 733


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 202/701 (28%), Positives = 339/701 (48%), Gaps = 103/701 (14%)

Query: 39  PVSLDVIMVERSCS-----SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           P S+  + V  SC      S+++   IH  ++   + R+  + T + +     G L  A 
Sbjct: 244 PNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAW 303

Query: 94  QI-IRQGDE-PEIKI--WNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC 140
           ++ +R+GDE P   +   +++I     NG+PQE   ++  +         VT   +LN C
Sbjct: 304 EVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNAC 363

Query: 141 GKLK-------------EVCQL--------------------------FDKLPNRDVISW 161
             L+             EV                             FD + + DV+SW
Sbjct: 364 SMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSW 423

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL---EMGKNLHLF 218
           N M + Y      RE L L  +M  EGV P   T ++ ++A           +GK +   
Sbjct: 424 NAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSL 483

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           LEE+ ++   ++ N  ++MY KCG + +A+ +  R      D + W ++++ Y       
Sbjct: 484 LEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGK 543

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI--- 335
           EA  LF  M    L+     ++ +   DA     S A       G  +H  +  N     
Sbjct: 544 EAFELFQAMEAEKLVKPN-KVTFVAVLDASTSRTSIA------QGREIHARVVSNGFESD 596

Query: 336 ---------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
                          S+D+ +  +D  S  ++++V  WTS+IA YA  G A++A+ LF  
Sbjct: 597 TVIQNALLNMYAKCGSLDDAQAIFDKSSS-NQEDVIAWTSLIAGYAQYGQAERALKLFWT 655

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M++ G +P+ VTFI+ L+AC+HGG +++G + LS  +  + I P  +H+ C+VDLLGR G
Sbjct: 656 MQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCG 715

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
            L+E+   +       DV  W +LL AC+  + ++  E   + + + DP    ++++LA+
Sbjct: 716 RLDEAEKLLERTS-QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLAS 774

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           +YA AGR ++ + IR  + D G++   G S +E    +H F++GD  +P SEEIYL L  
Sbjct: 775 MYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELER 834

Query: 561 IEMTLQQQG--------LQETSLQHRER--------LAVAFGLISTSEKTTIRIVNNLRI 604
           +  +++  G        L + S +H+ER        LA+AFGL+ST   + +R++ NLR+
Sbjct: 835 LHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRV 894

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           C DCH+  K+ S+V  R+I++RD+ R+H F  G CSC DYW
Sbjct: 895 CSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 935



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 138/283 (48%), Gaps = 22/283 (7%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
           V+  KCG L E   L D+  +  V S   MI  +   G   + + L  +M    V P+  
Sbjct: 88  VMHAKCGNLAEAEALADRFAS--VYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCH 142

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
            +++L++A + L +L  G+ +H  + +   + +  L N L+ MY KCG + +A++   R 
Sbjct: 143 ALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRL 202

Query: 255 -EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW--TLMISGMLNQDAEFKY 311
               + DVV W  ++S ++++    EA +LF +M +R+      ++    +L+   E   
Sbjct: 203 PRASKRDVVTWNAMISAFLRNGSAREALQLFRDM-DRDGAPPPNSVTFVSVLDSCVEAGL 261

Query: 312 KSCASIGALY-----HGIWVHVYIKKNQI----SIDNIELAYDLF----SEISEKNVYLW 358
            S   + A++      GI    +++   +     + +++ A+++F     E    ++   
Sbjct: 262 LSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTC 321

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           +++I+A    G  Q+++ LF  M   GTKP  VT +++L+ACS
Sbjct: 322 SAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACS 364



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 183/437 (41%), Gaps = 105/437 (24%)

Query: 97  RQGDEPE-----IKIWNSIIENQLINGYPQEVFAIYLYLV---------TRTVLLN---K 139
           R G  P      + + +S +E  L++   ++V AI+  +V          RT L++   K
Sbjct: 238 RDGAPPPNSVTFVSVLDSCVEAGLLS--LEDVRAIHGRIVGAGIEREAFVRTALVDSYGK 295

Query: 140 CGKLKEVCQLF----DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
            G L +  ++F    D+ P+  +++ + MIS     G  +E L L   M  EG  P  VT
Sbjct: 296 LGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVT 355

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +VS+++A + L   ++G      LE++   +S +                          
Sbjct: 356 LVSVLNACSML---QVGSATAFVLEQAMEVVSATR------------------------- 387

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD--------- 306
               D VL TTL++ Y +SN+   AR  FD +   +++SW  M +  L            
Sbjct: 388 ----DNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLF 443

Query: 307 ----------------------AEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL-- 342
                                 A +  ++ ++IG     +     ++ +  ++ N  L  
Sbjct: 444 ERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGD-TAVANATLNM 502

Query: 343 ---------AYDLFSEIS--EKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQ 390
                    A  +F  IS   ++   W S++AAY   G  ++A +LF  ME E   KP++
Sbjct: 503 YAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNK 562

Query: 391 VTFIALLSACSHGGLVDEGYDFLSK-KSRVYNIKPKMQHYGCMVDLLGRAGHLEES-ANF 448
           VTF+A+L A +    + +G +  ++  S  +     +Q+   ++++  + G L+++ A F
Sbjct: 563 VTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQN--ALLNMYAKCGSLDDAQAIF 620

Query: 449 ITSMPIPPDVSIWSSLL 465
             S     DV  W+SL+
Sbjct: 621 DKSSSNQEDVIAWTSLI 637



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 138/297 (46%), Gaps = 44/297 (14%)

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGS--LLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           L+ A  +LR L+ G+ LH  +    + +     L + L+ M+ KCG + EA+ L  R+  
Sbjct: 49  LLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADRF-- 106

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCA 315
               V   T ++  +++    D+A  LFD M V  N  +   +++            +C+
Sbjct: 107 --ASVYSCTAMIRAWMEHGRPDKAMELFDRMEVRPNCHALIALVN------------ACS 152

Query: 316 SIGALYHGIWVHVYI-----KKNQI-------------SIDNIELAYDLFSEISEKNVYL 357
            +G L  G  +H  I     ++N +             S+ + + A+D     S+++V  
Sbjct: 153 CLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVT 212

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
           W ++I+A+   G A++A+ LF +M+  G   P+ VTF+++L +C   GL+    D  +  
Sbjct: 213 WNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSL-EDVRAIH 271

Query: 417 SRVYNIKPKMQHY--GCMVDLLGRAGHLEESAN-FITSMPIPPDVSI--WSSLLRAC 468
            R+     + + +    +VD  G+ G L+++   F+      P  S+   S+++ AC
Sbjct: 272 GRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISAC 328


>gi|302780547|ref|XP_002972048.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
 gi|300160347|gb|EFJ26965.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
          Length = 606

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 276/540 (51%), Gaps = 42/540 (7%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            +CG ++    +F + P+ +V SW  +IS        R  LG    M   G  PD   + 
Sbjct: 77  GQCGDVESAHAVFARQPDPNVFSWMMLISACLRNARPRAALGHYRAMQLRGCHPDAHVVS 136

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++  A     +LE+G+++   L  + M     + N L++MY +CG + + ++    + + 
Sbjct: 137 AIFCAVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMDDFERAF--WAMP 194

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKSCAS 316
             D V WTT+++G ++      A  L   M +    I+  L  + +++        +C +
Sbjct: 195 SRDEVSWTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVD--------ACGN 246

Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
           + A+  G  +H  I  + + ID                ++ A +LF +  E N   ++S+
Sbjct: 247 LSAIAQGRHLHDRIITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNITFSSM 306

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           +AAYA  GH   A+ LF  ME+ G KPD VTF  +L ACSHGG VD+ + + +       
Sbjct: 307 VAAYARNGHFGDALKLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRG 366

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I    +H+GC VDLL RAG L ++  F+  MPIPPD   W SLL+ACR H+NV++   A 
Sbjct: 367 IPLVAEHFGCAVDLLARAGWLADAEKFLNRMPIPPDSVSWMSLLQACRIHRNVEIGARAA 426

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           +H+    P   G + LL+NIY+ AG+ D  ++++  +RD G+KK  G S IE  G   +F
Sbjct: 427 EHVFRLAPHRAGPYSLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGKTSEF 486

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAF 585
             GD ++P   +I   +  +   +++ G    + Q                H E+LA+  
Sbjct: 487 IVGDSWHPDLVQICQEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKLAIGL 546

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GLI T  KTTI IV N+R+C DCH+  KV S+V  R+IVIRD   FH  + G CSCRDYW
Sbjct: 547 GLIKTPPKTTISIVKNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGNCSCRDYW 606



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 117/283 (41%), Gaps = 50/283 (17%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           ++ +  ++H+ ++ T  +R   +S ++ +     GD+  A  +  +  +P +  W  +I 
Sbjct: 46  ALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCGDVESAHAVFARQPDPNVFSWMMLIS 105

Query: 113 NQLINGYPQEVFAIYLYL------------------------------------------ 130
             L N  P+     Y  +                                          
Sbjct: 106 ACLRNARPRAALGHYRAMQLRGCHPDAHVVSAIFCAVADTANLELGRSITAPLASTAMLH 165

Query: 131 --VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
             V    LLN   +CG + +  + F  +P+RD +SW TM++     G     L LL  M 
Sbjct: 166 DPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVSWTTMLAGRIQCGREASALELLRVMD 225

Query: 186 AEGVS-PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
            +G      +T  +L+ A   L  +  G++LH  +  S + I   L   L++MY KCG++
Sbjct: 226 QDGFRITSALTFATLVDACGNLSAIAQGRHLHDRIITSGVCIDVVLHTALLNMYAKCGRV 285

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            EA++L    +  E + + ++++V+ Y ++    +A +LF  M
Sbjct: 286 DEARELFD--QTLEPNNITFSSMVAAYARNGHFGDALKLFWSM 326


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 182/519 (35%), Positives = 276/519 (53%), Gaps = 49/519 (9%)

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLHLFL 219
           WNTMI  Y+     RE + L   M A+G++P +  T   L+++  +L  LE G  +H  +
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
            +   +    + N L+ +Y   G +  A+ L     +   D+V + T++ GY + N+ + 
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVR--DLVSYNTMIKGYAEVNQPES 119

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA------LYHGIWVHVYIKKN 333
           A  LF EM   + ++   ++S            +CA +GA      LYH    +    +N
Sbjct: 120 ALCLFGEMQNSDEVTLVAVLS------------ACARLGAFDLGKRLYHQYIENGVFNQN 167

Query: 334 QI----------SIDNIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
            I             +I+ A ++F  + +  K  +++ S+IA  A  G  + AI +F E+
Sbjct: 168 TILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFREL 227

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
             TG KPD+VTF+ +L AC H GL++EG          Y IKP+M+HYGCMVDLLGR G 
Sbjct: 228 ISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGC 287

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           LEE+ + +  MP   +  IW +LL ACR H NVK+ E A + L E +  +   +VLL+NI
Sbjct: 288 LEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNI 347

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
            A A + ++  ++R  + D G++K  G+S IE GG +H+F + D  +P  +EI LML ++
Sbjct: 348 LADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDM 407

Query: 562 EMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRIC 605
            M L+  G    + Q                H E+LA+AFGL+  S   TIRIV NLRIC
Sbjct: 408 AMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRIC 467

Query: 606 GDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
            DCH   K+ S++Y REI +RD  RFH F+ G CSC D+
Sbjct: 468 ADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 26/162 (16%)

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           +W T++ GY +S+   EA  L+  M+ +        I+   N    F   SCA + +L  
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKG-------IAPPNNFTFPFLLNSCARLSSLEP 53

Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  VH +I K+    D               N+ LA  LF E   +++  + ++I  YA 
Sbjct: 54  GHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 113

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
               + A+ LF EM+ +    D+VT +A+LSAC+  G  D G
Sbjct: 114 VNQPESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLG 151


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 178/556 (32%), Positives = 297/556 (53%), Gaps = 44/556 (7%)

Query: 124 FAIYLYLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
           F + L++ T  + +  +C   +   Q+F ++  +++I+W+ +I+ +   G   E L    
Sbjct: 142 FELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFR 201

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC- 241
            M  EG+ P+ VT +SL++  T    LE    +HL + E  +  + ++ N LV++Y +C 
Sbjct: 202 MMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCE 261

Query: 242 -GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
            G++  A+ +L   E+DE  +  W  L++GY       EA   +  +    +    +   
Sbjct: 262 TGELDVAEVIL--QEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFI 319

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHV----------YIKKNQIS-----IDNIELAYD 345
            +LN        +C S  +L  G  +H            I KN ++       ++E A  
Sbjct: 320 SVLN--------ACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARR 371

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  +  ++   W  ++ AYA  G +++ + L  +ME+ G K + +TF+++LS+CSH GL
Sbjct: 372 IFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGL 431

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           + EG  +         I+ K +HYGC+VDLLGRAG L+E+  +I+ MP  P++  W+SLL
Sbjct: 432 IAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLL 491

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            ACR H+++   + A + L E DP N  A V+L+NIY++ G   + +++R  +    +KK
Sbjct: 492 GACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKK 551

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------Q 571
             G S I+    VH+F   D  +P + EIY  + E+   +++ G               Q
Sbjct: 552 VPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQ 611

Query: 572 ETSL--QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
           + SL   H E+LA+AFGLIST EK+++ I  NLR+C DCH+  K  S++  REIV+RDN 
Sbjct: 612 KESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNH 671

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSC+DYW
Sbjct: 672 RFHHFRDGSCSCKDYW 687



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 167/355 (47%), Gaps = 22/355 (6%)

Query: 128 LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
           L +   T L+N   KCG L +  ++FD +P R V +WN+MIS Y+      E   +  +M
Sbjct: 43  LDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRM 102

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
             EG   D VT +S++ A     +L+ GK++   + E++ ++   +   L+ MY +C   
Sbjct: 103 QHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSP 162

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
             A ++ GR  + + +++ W+ +++ +       EA R F  M +  ++   +    +LN
Sbjct: 163 ENAAQVFGR--MKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLN 220

Query: 305 ---QDAEFKYKSCASIGALYHGI---------WVHVYIKKNQISIDNIELAYDLFSEISE 352
                +  +  S   +    HG+          V+VY    +     +++A  +  E+ E
Sbjct: 221 GFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVY---GRCETGELDVAEVILQEMDE 277

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           + +  W  +I  Y + G +++A++ +  ++      D+VTFI++L+AC+    + EG   
Sbjct: 278 QQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KM 336

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           +   +    +   +     + ++  + G +E +     SMPI   VS W+ +L+A
Sbjct: 337 IHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVS-WNGMLQA 390



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 117/273 (42%), Gaps = 59/273 (21%)

Query: 52  SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF------TGDLGYAQQIIRQGDEPEIK 105
           S ++E  RIH  LIT + + D   +T +   LV       TG+L  A+ I+++ DE +I 
Sbjct: 226 SGLEELSRIHL-LITEHGLDD---TTTMSNALVNVYGRCETGELDVAEVILQEMDEQQIT 281

Query: 106 IWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLN------------------ 138
            WN +I    ++G  +E    Y  L         VT   +LN                  
Sbjct: 282 AWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNA 341

Query: 139 --------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
                               KCG ++   ++FD +P R  +SWN M+  Y   G   E L
Sbjct: 342 VECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVL 401

Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDM 237
            L+ KM  EGV  + +T VS++S+ +    +  G +  H    +  +++       LVD+
Sbjct: 402 KLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDL 461

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
             + GK+ EA+K + +    E ++V W +L+  
Sbjct: 462 LGRAGKLQEAEKYISKMP-SEPEIVTWASLLGA 493


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 179/499 (35%), Positives = 285/499 (57%), Gaps = 49/499 (9%)

Query: 184 MGAEGVSPDEVTMVSLISA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           M  EGV PD++  V+ ++A    L DL +GK +H  + E+ ++ +  +   LV+MY K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 243 KIGEAQKL---LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV---------ER 290
            + EA ++   LGR      D+V WT L+S Y + +   EA +LF EM          +R
Sbjct: 61  CLDEATRVFRGLGRK-----DLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDR 115

Query: 291 NLISWTLMISGMLNQDAEFKY-----KSC---ASIGALYHGIWVHVYIKKNQISIDNIEL 342
           +  ++ L     L+  AE +      + C   +S G L  GI +++Y K       N+  
Sbjct: 116 SYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGI-INMYGK-----CGNLRA 169

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A+++F  +SE++   WT++I+ YA  GH+++++ +F  M++ G+KPD V+ + +LS CSH
Sbjct: 170 AHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSH 229

Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
            GLV++G+DF    ++ + ++P  +HYGCM+DLLGR+G LE +   I  MP       W+
Sbjct: 230 AGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWA 289

Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
             L AC+ H + +  + A + + E +P+   A+V L+NIYA AG  D + R+R  ++ MG
Sbjct: 290 IFLAACKVHSDTERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQVDRVRSAMKAMG 348

Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ----- 576
           L+K  G S IE    VH+F +GD  +P + EIY +L  +   ++  G + +T L      
Sbjct: 349 LQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVS 408

Query: 577 ----------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
                     H E+LA+AFGL+ST   +++RI+ NLR+CGDCH+  K  S++  REI +R
Sbjct: 409 EEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMR 468

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D+ RFH FQ G CSC DYW
Sbjct: 469 DSQRFHHFQDGHCSCGDYW 487



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 131 VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--- 184
           V  T L+N   K G L E  ++F  L  +D++SW  ++S Y+   +YRE L L  +M   
Sbjct: 47  VVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLH 106

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY-LVDMYFKCGK 243
           G +G  PD      L+ A   L     G+  H  ++E     S  +L   +++MY KCG 
Sbjct: 107 GLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGN 166

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
           +  A ++     + E D V WTT++SGY      +E+  +F  M
Sbjct: 167 LRAAHEVFD--GMSERDTVAWTTIISGYAHHGHSEESLLMFWRM 208



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 75/155 (48%), Gaps = 2/155 (1%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG L+   ++FD +  RD ++W T+IS Y   G   E L +  +M  +G  PD V+
Sbjct: 160 MYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVS 219

Query: 196 MVSLISARTKLRDLEMGKNLHL-FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           ++ ++S  +    +E G +  L   +E  ++        ++D+  + G +  A+ ++ R 
Sbjct: 220 LLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRM 279

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
              +   + W   ++     ++ +  +R  ++++E
Sbjct: 280 PF-QATAMNWAIFLAACKVHSDTERGKRAAEKVLE 313


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 196/546 (35%), Positives = 294/546 (53%), Gaps = 47/546 (8%)

Query: 138 NKCGKLKEVCQLFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           +K G LKE  ++F  L  +RD +SWN+M+  Y       + L L  +M   G+  D  T+
Sbjct: 184 SKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTL 243

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK-IGEAQKLLGRYE 255
            S+++A T ++DL  G   H  L +S    +  + + L+D+Y KCG  + + +K+    E
Sbjct: 244 ASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFD--E 301

Query: 256 IDEVDVVLWTTLVSGY-VKSNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFK 310
           I   D+VLW T++SGY +  +  DEA   F ++       +  S   +IS   N      
Sbjct: 302 ISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNM----- 356

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDNIELAY-----------DLFSEISEKNVYLWT 359
             S  S G   HG+ + + I  N+IS++N  +A             LF  + E N   + 
Sbjct: 357 --SSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYN 414

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           S+IA YA  G   +++ LF  M E G  P  +TFI++L+AC+H G V++G  + +   + 
Sbjct: 415 SMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQK 474

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           + I+P+  H+ CM+DLLGRAG L E+   I ++P  P    WS+LL ACR H NV+LA  
Sbjct: 475 FGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIK 534

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A   L + DPLN   +V+LANIY+  GRL D + +R  +RD G+KK+ G S IE    +H
Sbjct: 535 AANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIH 594

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-----------------QETSLQ---HRE 579
            F + D F+P  ++I   L E+   +++ G                  +E  L+   H E
Sbjct: 595 IFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSE 654

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           +LAV+FGL+ST E   I +  NLRIC DCH+ +K  S+V  REI +RD+ RFH F+ GQC
Sbjct: 655 KLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQC 714

Query: 640 SCRDYW 645
           SC  YW
Sbjct: 715 SCGGYW 720



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 181/402 (45%), Gaps = 33/402 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           QLFD++P  D +S+NT+I+ Y   G  +    L  +M    +  D  T+  +I+A     
Sbjct: 95  QLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGI-- 152

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           ++ + + LH     + +    S+ N L+  Y K G + EA+++   +  ++ D V W ++
Sbjct: 153 NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIF-HWLSEDRDEVSWNSM 211

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           V  Y++  E  +A  L+ EM  R LI     ++ +L         +  ++  L  G+  H
Sbjct: 212 VVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLT--------AFTNVQDLLGGLQFH 263

Query: 328 V------YIKKNQISIDNIEL----------AYDLFSEISEKNVYLWTSVIAAYAMAGH- 370
                  Y + + +    I+L             +F EIS  ++ LW ++I+ Y++    
Sbjct: 264 AKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDL 323

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
           + +A++ F +++  G +PD  + + ++SACS+     +G        ++     ++    
Sbjct: 324 SDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNN 383

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET--D 488
            ++ +  + G+L ++     +MP    VS ++S++     H     + H F+ + E    
Sbjct: 384 ALIAMYSKCGNLRDAKTLFDTMPEHNTVS-YNSMIAGYAQHGMGFQSLHLFQRMLEMGFT 442

Query: 489 PLNDGAHVLLANIYAKAGRLDDMS-RIRMKLRDMGLKKQLGY 529
           P N     +LA   A  GR++D      M  +  G++ + G+
Sbjct: 443 PTNITFISVLAAC-AHTGRVEDGKIYFNMMKQKFGIEPEAGH 483



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
            + +KCG L++   LFD +P  + +S+N+MI+ Y   GM  + L L  +M   G +P  +
Sbjct: 387 AMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNI 446

Query: 195 TMVSLISARTKLRDLEMGK-NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           T +S+++A      +E GK   ++  ++  ++      + ++D+  + GK+ EA++L+  
Sbjct: 447 TFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIET 506

Query: 254 YEIDEVDVVLWTTLVSG 270
              D      W+ L+  
Sbjct: 507 IPFDP-GFFFWSALLGA 522



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 135/300 (45%), Gaps = 48/300 (16%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           RDL  GK+LH    +S +  S  L N+ + +Y KC ++  A+++       + +V  + T
Sbjct: 22  RDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFD--HTHDCNVFSFNT 79

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ-DAEFKYK------------- 312
           L+S Y K +  + A +LFDEM + + +S+  +I+    + D +  ++             
Sbjct: 80  LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMD 139

Query: 313 ---------SCA-SIGAL--YHGIWVHVYIKKNQISIDN-----------IELAYDLFSE 349
                    +C  ++G +   H + V V    + +S+ N           ++ A  +F  
Sbjct: 140 GFTLSGIITACGINVGLIRQLHALSV-VTGLDSYVSVGNALITSYSKNGFLKEARRIFHW 198

Query: 350 ISE-KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           +SE ++   W S++ AY       KA++L+LEM   G   D  T  ++L+A ++   +  
Sbjct: 199 LSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLG 258

Query: 409 GYDFLSK--KSRVYNIKPKMQHYGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           G  F +K  KS  +    +  H G  ++DL  + G        +      PD+ +W++++
Sbjct: 259 GLQFHAKLIKSGYH----QNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMI 314


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 177/547 (32%), Positives = 287/547 (52%), Gaps = 48/547 (8%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T + +KCG+L + C+ F+++P +D + W +MI  +   G +++ L    KM  + V  D+
Sbjct: 218 TDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQ 277

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
             + S +SA + L+    GK+LH  + +   +    + N L DMY K G +  A  +  +
Sbjct: 278 HVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVF-Q 336

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEF 309
              D + +V  T ++ GYV+ ++ ++A   F ++    +E N  ++T +I          
Sbjct: 337 IHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLI---------- 386

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKN 354
             K+CA+   L HG  +H  + K     D                 + +  LF EI   +
Sbjct: 387 --KACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPD 444

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              W +++  ++  G  + AI+ F  M   G KP+ VTF+ LL  CSH G+V++G ++ S
Sbjct: 445 EIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFS 504

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
              ++Y + PK +HY C++DLLGRAG L+E+ +FI +MP  P+V  W S L AC+ H ++
Sbjct: 505 SMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDM 564

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           + A+ A   L + +P N GAHVLL+NIYAK  + +D+  +R  ++D  + K  GYS ++ 
Sbjct: 565 ERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDI 624

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------------LQETSLQ-HR 578
               H F   D  +P  +EIY  L+ +   +++ G               L+E  L  H 
Sbjct: 625 RNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHS 684

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           ER+AVAF L++      I +  NLR+C DCHS +K  S+V  R I++RD  RFH F  G 
Sbjct: 685 ERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGS 744

Query: 639 CSCRDYW 645
           CSC DYW
Sbjct: 745 CSCGDYW 751



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 165/346 (47%), Gaps = 28/346 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG+L    +LFDK+  R+++SW ++I+ +     ++E L    +M  EG    +  
Sbjct: 119 LYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFA 178

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + S++ A T L  ++ G  +H  + +        + + L DMY KCG++ +A K     E
Sbjct: 179 LSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAF--EE 236

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D VLWT+++ G+VK+ +  +A   + +MV  ++     ++   L+        +C+
Sbjct: 237 MPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLS--------ACS 288

Query: 316 SIGALYHGIWVHVYIKKNQISIDNI--ELAYDLFSE----ISEKNVYL----------WT 359
           ++ A   G  +H  I K     +        D++S+    +S  NV+            T
Sbjct: 289 ALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLT 348

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++I  Y      +KA+  F+++   G +P++ TF +L+ AC++   ++ G     +  + 
Sbjct: 349 AIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVK- 407

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           +N K        +VD+ G+ G  + S      +  P +++ W++L+
Sbjct: 408 FNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIA-WNTLV 452



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 25/225 (11%)

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  T+  LI    + ++L  GK LH  L       +  L N+ +++Y KCG++    KL 
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
            +  + + ++V WT++++G+  ++   EA   F +M     I+    +S +L        
Sbjct: 134 DK--MSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVL-------- 183

Query: 312 KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVY 356
           ++C S+GA+  G  VH  + K     +                +  A   F E+  K+  
Sbjct: 184 QACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAV 243

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           LWTS+I  +   G  +KA+  +++M       DQ    + LSACS
Sbjct: 244 LWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACS 288


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 290/558 (51%), Gaps = 50/558 (8%)

Query: 124 FAIYLYLVTR-TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
           F  + Y++T    L +KCG+++    LF ++   D++S+N MIS YT        + L  
Sbjct: 238 FHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFK 297

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           ++   G   +  ++V LI        L + + +H F  +S +  + S+   L  +Y +  
Sbjct: 298 ELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLN 357

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLM 298
           +I  A+ L    E  E  +  W  ++SGY ++   ++A  LF EM    V  N ++ T +
Sbjct: 358 EIESARLLFD--ESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSI 415

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELA 343
           +S            +CA +GAL  G WVH  I +             ID      +I  A
Sbjct: 416 LS------------ACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEA 463

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             LFS + EKN   W ++I+ Y + G+  +A++LF EM  +   P  VTF+++L ACSH 
Sbjct: 464 QRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHA 523

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           GLV EG +        +  +P  +HY CMVDLLGRAG+L+++ +FI  MP+ P   +W +
Sbjct: 524 GLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGA 583

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL AC  H++  LA  A   L E DP N G +VLL+NIY+      + + +R  ++   L
Sbjct: 584 LLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKL 643

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE---TSLQ---- 576
            K  G +LIE    +H FTSGD  +P +  IY ML ++   +++ G Q    T+L     
Sbjct: 644 AKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEE 703

Query: 577 ---------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
                    H E+LA+AFGLI++   T IRI+ NLR+C DCH+  K  S++  R IV+RD
Sbjct: 704 EEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRD 763

Query: 628 NGRFHRFQGGQCSCRDYW 645
             RFH F+ G CSC DYW
Sbjct: 764 ANRFHHFKDGICSCGDYW 781



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 139/657 (21%), Positives = 262/657 (39%), Gaps = 121/657 (18%)

Query: 52  SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII 111
           S++ +  + H+ +I   L  D    T++   L     +  A  +      P++ ++N +I
Sbjct: 21  STLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLI 80

Query: 112 ENQLINGYPQEVFAIYLYLVTRTVL----------------------------------- 136
               +N  P    ++Y +L   T L                                   
Sbjct: 81  RAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSD 140

Query: 137 ----------LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                       K  ++    ++FD +  RD + WNTM+S       + E + +   M  
Sbjct: 141 LFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVK 200

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G+  D  T+ +++    +L+DL +G  +     +        ++  L  +Y KCG+I  
Sbjct: 201 GGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIET 260

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+ L G  +I + D+V +  ++SGY  +NE + + RLF E++       +  I G++   
Sbjct: 261 ARLLFG--QIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVF 318

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQIS---------------IDNIELAYDLFSEIS 351
             F        G L+    +H +  K+ +                ++ IE A  LF E S
Sbjct: 319 FPF--------GHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESS 370

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-- 409
           EK++  W ++I+ YA  G  +KAI LF EM++   +P+ VT  ++LSAC+  G +  G  
Sbjct: 371 EKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKW 430

Query: 410 -YDFLSKKS-------------------------RVYNIKPKMQH--YGCMVDLLGRAGH 441
            +D ++++S                         R++++ P+     +  M+   G  G+
Sbjct: 431 VHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGY 490

Query: 442 LEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET---DPLNDGAH 495
             E+ N    M    + P    + S+L AC     V+  +  F+ +      +PL +  +
Sbjct: 491 GHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPE-HY 549

Query: 496 VLLANIYAKAGRLDD-MSRIRMKLRDMGLK---KQLGYSLIEQGGFVHKFTSGDIF--NP 549
             + ++  +AG LD  +  IR    + G       LG  +I +   + +  S  +F  +P
Sbjct: 550 ACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDP 609

Query: 550 HSEEIYLMLNEIEMTLQQ--QGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRI 604
            +   Y++L+ I    Q   +      +  R +LA       T   T I + N L I
Sbjct: 610 QNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLA------KTPGCTLIEVANTLHI 660


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 175/537 (32%), Positives = 278/537 (51%), Gaps = 40/537 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L       +K+  ++ ++   ++  YT     R+ L L  KM +EGV  D      
Sbjct: 239 KCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSI 298

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A   L DL  GK +H +  +  ++   S+   LVD Y KC +   A++      I E
Sbjct: 299 ILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAF--ESIHE 356

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +   W+ L++GY +S + D A  +F  +  + ++  + + + +        +++C+++ 
Sbjct: 357 PNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNI--------FQACSAVS 408

Query: 319 ALYHGIWVHV-YIKKNQIS--------------IDNIELAYDLFSEISEKNVYLWTSVIA 363
            L  G  +H   IKK  ++                 ++ A+  F  I + +   WT++I 
Sbjct: 409 DLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIIC 468

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           A+A  G A +A+ LF EM+ +G +P+ VTFI LL+ACSH GLV EG   L   S  Y + 
Sbjct: 469 AHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVN 528

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P + HY CM+D+  RAG L+E+   I S+P  PDV  W SLL  C  H+N+++   A  +
Sbjct: 529 PTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADN 588

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           +   DPL+   +V++ N+YA AG+ D+ ++ R  + +  L+K++  S I   G VH+F  
Sbjct: 589 IFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVV 648

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG---------------LQETSLQHRERLAVAFGLI 588
           GD  +P +E+IY  L E+  + ++                  +E  L H ERLA+A+GLI
Sbjct: 649 GDRHHPQTEQIYSKLKELNFSFKKSKERLLNEENALCDFTERKEQLLDHSERLAIAYGLI 708

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            T+  T I +  N R C DCH F K  S V  RE+V+RD  RFH    G+CSCRDYW
Sbjct: 709 CTAADTPIMVFKNTRSCKDCHDFAKRVSIVTGRELVVRDGNRFHHINSGECSCRDYW 765



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 161/372 (43%), Gaps = 51/372 (13%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           C       + FDK+ ++D+ SW+T+IS YT  G   E + L  +M   G++P+     +L
Sbjct: 139 CKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTL 198

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           I + T    L++GK +H  L       + S+   + +MY KCG +  A+  +   ++   
Sbjct: 199 IMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAE--VATNKMTRK 256

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           + V  T L+ GY K+    +A  LF +M+   +     + S +L        K+CA++G 
Sbjct: 257 NAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIIL--------KACAALGD 308

Query: 320 LYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVYLWTSVIAA 364
           LY G  +H Y  K    +++S+              E A   F  I E N + W+++IA 
Sbjct: 309 LYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAG 368

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEG-YDF 412
           Y  +G   +A+++F  +   G   +   +  +  ACS           H   + +G   +
Sbjct: 369 YCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAY 428

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
           LS +S              M+ +  + G ++ +     ++   PD   W++++ A   H 
Sbjct: 429 LSGES-------------AMISMYSKCGQVDYAHQAFLTID-KPDTVAWTAIICAHAYHG 474

Query: 473 NVKLAEHAFKHL 484
               A   FK +
Sbjct: 475 KAFEALRLFKEM 486



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 111/276 (40%), Gaps = 52/276 (18%)

Query: 46  MVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP 102
           ++ ++C+++ +    ++IHS+ I   L  +  + T + +F V       A+Q      EP
Sbjct: 298 IILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEP 357

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN------------------------ 138
               W+++I     +G       ++  + ++ VLLN                        
Sbjct: 358 NDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIH 417

Query: 139 -----------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
                                  KCG++    Q F  +   D ++W  +I  +   G   
Sbjct: 418 ADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAF 477

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYL 234
           E L L  +M   GV P+ VT + L++A +    ++ GK  L    +E  +  +    N +
Sbjct: 478 EALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCM 537

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +D+Y + G + EA +++ R    E DV+ W +L+ G
Sbjct: 538 IDVYSRAGLLQEALEVI-RSLPFEPDVMSWKSLLGG 572



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQIS---IDNIEL-----------AYDLFSEISEK 353
           E+ +K C ++GAL  G   H  +++   S   IDN  L           A   F +I ++
Sbjct: 96  EYLFKMCGTLGALSDGKLFHNRLQRMANSNKFIDNCILKMYCDCKSFTSAERFFDKIVDQ 155

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           ++  W+++I+AY   G   +A+ LFL M + G  P+   F  L+ + +   ++D G    
Sbjct: 156 DLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIH 215

Query: 414 SKKSRV 419
           S+  R+
Sbjct: 216 SQLIRI 221



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 57/264 (21%)

Query: 49  RSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
           ++CS++ +     +IH+  I   L+      + +       G + YA Q     D+P+  
Sbjct: 402 QACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTV 461

Query: 106 IWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKLKEVCQLFDKL 153
            W +II     +G   E   ++  +         VT   LLN C   G +KE  ++ D +
Sbjct: 462 AWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSM 521

Query: 154 P-----NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
                 N  +  +N MI  Y+  G+ +E L ++  +  E   PD ++  SL+      R+
Sbjct: 522 SDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFE---PDVMSWKSLLGGCWSHRN 578

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           LE+G                       D  F+               +D +D   +  + 
Sbjct: 579 LEIGM-------------------IAADNIFR---------------LDPLDSATYVIMF 604

Query: 269 SGYVKSNERDEARRLFDEMVERNL 292
           + Y  + + DEA +    M ERNL
Sbjct: 605 NLYALAGKWDEAAQFRKMMAERNL 628


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/413 (40%), Positives = 242/413 (58%), Gaps = 28/413 (6%)

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS-----GMLNQD-AEF 309
           + E ++V W +++SG+VK    +EA  LF EM  R+++SW  M++     G  N+  A F
Sbjct: 1   MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 60

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
                  + ++     V +Y K  +IS     LA  +F+ +  K+V  W ++IA  A+ G
Sbjct: 61  DQMQAVGVNSIVGTALVDMYAKCGKIS-----LATQVFNAMESKDVLAWNTIIAGMAILG 115

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
           H ++A  LF EM+E G +P+ +TF+A+LSACSH G+VDEG   L   S  Y I+PK++HY
Sbjct: 116 HVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY 175

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GC++DLL RAG LEE+   I +MP+ P+     +LL  CR H N +L E   K L    P
Sbjct: 176 GCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLEGCRIHGNFELGEMVGKRLINLQP 235

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            + G ++LL+NIYA A + DD  ++R  ++  G+ K  G S+IE  G VH+F +GD  +P
Sbjct: 236 CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHP 295

Query: 550 HSEEIYLMLNEIEMTLQQ---------QGL-------QETSLQ-HRERLAVAFGLISTSE 592
            S +IY  LNEI   L+           GL       +E +L  H E+LA+A+GL+    
Sbjct: 296 ESNKIYEKLNEIHTRLKSAIGYSADTGNGLLDMEEEDKEHALAVHSEKLAIAYGLLHLDS 355

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K  IRIV NLR+C DCH   K+ S+VY  EI++RD  RFH F+ G+CSC D+W
Sbjct: 356 KEAIRIVKNLRVCRDCHHVTKLISKVYGGEIIVRDRNRFHHFEDGECSCLDFW 408



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 19/207 (9%)

Query: 107 WNSIIENQLINGYPQEVFAIYLYL-------VTRTVLLN---KCGKLKEVCQLFDKLPNR 156
           WNS++      G P E  A++  +       +  T L++   KCGK+    Q+F+ + ++
Sbjct: 40  WNSMLACYAQCGKPNEALALFDQMQAVGVNSIVGTALVDMYAKCGKISLATQVFNAMESK 99

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
           DV++WNT+I+    +G  +E   L  +M   GV P+++T V+++SA +    ++ G+ L 
Sbjct: 100 DVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKL- 158

Query: 217 LFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           L    S+  I   + +Y  ++D+  + G + EA +L+G   ++     L   L    +  
Sbjct: 159 LDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLEGCRIHG 218

Query: 275 NERDEARRLFDEMVERNLISWTLMISG 301
           N          EMV + LI+     SG
Sbjct: 219 NFE------LGEMVGKRLINLQPCHSG 239


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 184/523 (35%), Positives = 282/523 (53%), Gaps = 43/523 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           Q+FD++P   +  WNT+   Y    +  E + L  KM   GV PDE T   ++ A ++L 
Sbjct: 64  QVFDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLG 123

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L  G +LH  + ++  +  G +   LV MY K G++  A+ L    ++   D+V W   
Sbjct: 124 VLPCGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVK--DLVAWNAF 181

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++  V++     A   F++M    +   +  +  ML+        +C  +G+L  G  ++
Sbjct: 182 IAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS--------ACGQLGSLDIGEEIY 233

Query: 328 VYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
              +K +I  + I               E A  LF ++ ++NV  W+++I  YAM G + 
Sbjct: 234 DRARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSG 293

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV--YNIKPKMQHYG 430
           +A+ LF  M+  G +P+ VTF+ +LSACSH GLV+EG  + S   R+   N++P+ +HY 
Sbjct: 294 EALALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYA 353

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           CMVDLLGR+G LEE+  FI  M + PD  IW +LL AC  H+++ L +     L ET P 
Sbjct: 354 CMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPD 413

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
               HVLL+NIYA AG+ D + ++R K+R +G KK   YS +E  G +H F  GDI +P 
Sbjct: 414 IGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQ 473

Query: 551 SEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKT 594
           S+ IY  L+EI   ++  G                +E+SL  H E+LA+AFGLI+     
Sbjct: 474 SKAIYEKLDEILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLINGRAGH 533

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637
            IR++ NLR C DCH F K  S++ +REI++RD  RFH F+ G
Sbjct: 534 PIRVMKNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 200/677 (29%), Positives = 347/677 (51%), Gaps = 60/677 (8%)

Query: 16  EPKLVRLGLV--PKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDP 73
           +P  V+LG+        S  FA+V  V+  +I +   C  +++ ER+ + ++  + +   
Sbjct: 260 DPSFVKLGMGIHGAALKSNHFADV-YVANALIAMYAKCGRMEDAERVFASMLCRDYVSWN 318

Query: 74  QISTQVFEFLVFTGDLGYAQQIIRQGDEP-EIKIWNSIIEN----QLINGYPQEVFAIYL 128
            + + + +  ++   L Y + +     +P ++ + N I  +     L+NG     +AI  
Sbjct: 319 TLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRN 378

Query: 129 YLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
            L +   + N       KC  +K +   F+ +  +D+ISW T+I+ Y     + E + L 
Sbjct: 379 GLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLF 438

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            K+  +G+  D + + S++ A + L+     + +H ++ +  +     L N +V++Y   
Sbjct: 439 RKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVY--- 494

Query: 242 GKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           G++G        +E I   D+V WT++++  V +    EA  LF  + + N+   ++ I 
Sbjct: 495 GEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAII 554

Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYD 345
             L+        + A++ +L  G  +H ++ +    ++                +E +  
Sbjct: 555 SALS--------ATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRK 606

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
           +F  + ++++ LWTS+I A  M G   +AI LF +M +    PD +TF+ALL ACSH GL
Sbjct: 607 MFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGL 666

Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           + EG  F       Y ++P  +HY CMVDLL R+  LEE+  F+ SMPI P   +W +LL
Sbjct: 667 MVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALL 726

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            AC  H N +L E A K L ++D  N G + L++NI+A  GR +D+  +R++++  GLKK
Sbjct: 727 GACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKK 786

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--LQETSL-------- 575
             G S IE    +H F + D  +P +++IYL L +    L ++G  + +T          
Sbjct: 787 NPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEE 846

Query: 576 -------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDN 628
                  +H ERLA+ +GL+ T + T+IRI  NLRIC DCH+F K+ S+V  R +V+RD 
Sbjct: 847 EKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDA 906

Query: 629 GRFHRFQGGQCSCRDYW 645
            RFH F+ G CSC D+W
Sbjct: 907 NRFHHFERGLCSCGDFW 923



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 149/322 (46%), Gaps = 17/322 (5%)

Query: 129 YLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           +L T+ + +  KCG LK+  ++FD++  R + +WN M+  + S G Y E + L  +M   
Sbjct: 80  FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVL 139

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV+ D  T  S++ A   L +  +G  +H    +        + N L+ MY KCG +G A
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGA 199

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--Q 305
           + L     +++ D V W +++S +V   +  EA  LF  M E  + S T      L   +
Sbjct: 200 RVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVE 259

Query: 306 DAEF-KYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTS 360
           D  F K        AL    +  VY+    I++      +E A  +F+ +  ++   W +
Sbjct: 260 DPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNT 319

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +++        + A++ F +M+ +  KPDQV+ + L++A    G +  G     K+   Y
Sbjct: 320 LLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNG-----KEVHAY 374

Query: 421 NIK----PKMQHYGCMVDLLGR 438
            I+      MQ    ++D+  +
Sbjct: 375 AIRNGLDSNMQIGNTLIDMYAK 396



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 139/330 (42%), Gaps = 47/330 (14%)

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           ++ L  G+ LH  L +S   +S  L   L+ MY KCG + +A K+    E+ E  +  W 
Sbjct: 59  VKALPQGQQLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFD--EMTERTIFTWN 114

Query: 266 TLVSGYVKSNERDEARRLFDEM------VERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
            ++  +V S +  EA  L+ EM      ++       L   G L +         + +GA
Sbjct: 115 AMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGE---------SRLGA 165

Query: 320 LYHGIWVH------VYIKKNQISI----DNIELAYDLFSEI--SEKNVYLWTSVIAAYAM 367
             HG+ V       V++    I++     ++  A  LF  I   +++   W S+I+A+  
Sbjct: 166 EIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVT 225

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G   +A+ LF  M+E G   +  TF+A L        V  G         ++    K  
Sbjct: 226 EGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMG-------IHGAALKSN 278

Query: 428 HYG------CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           H+        ++ +  + G +E++     SM     VS W++LL     ++  + A + F
Sbjct: 279 HFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVS-WNTLLSGLVQNELYRDALNYF 337

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDM 511
           + +  +    D   VL  N+ A +GR  ++
Sbjct: 338 RDMQNSAQKPDQVSVL--NLIAASGRSGNL 365


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 188/597 (31%), Positives = 304/597 (50%), Gaps = 94/597 (15%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG+     ++FD++ +R+V+ +N MI  Y +   Y +GL +  +M   G  PD  T   +
Sbjct: 66  CGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCV 125

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A +   +L  G  +H  + +  +  +  + N L+ MY KCG + EA+++    E+   
Sbjct: 126 LKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD--EMIWK 183

Query: 260 DVVLWTTLVSGYVKSNERDEA-------------------------------------RR 282
           DVV W ++V+GY  +   D+A                                      +
Sbjct: 184 DVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEK 243

Query: 283 LFDEMVERNLISWTLMI-----SGMLNQDAEFKYK------------------SCASIGA 319
           +F  +  +NLISW +MI     + +  Q  +   +                  +C  + A
Sbjct: 244 IFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSA 303

Query: 320 LYHGIWVHVYIKKNQIS----IDN-----------IELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H Y++K ++     ++N           ++ A  +F  +  ++V  WTS+I+A
Sbjct: 304 LLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISA 363

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           Y M G    A+ LF EM  +G  PD + F+A+LSACSH GL+DEG  +  + +  Y I P
Sbjct: 364 YGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITP 423

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           +++HY C+VDLLGRAG ++E+ N I  MPI P+  +W++LL +CR   N+ +   A  +L
Sbjct: 424 RIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNL 483

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
            +  P   G +VLL+NIYAKAGR  +++ IR  ++   ++K  G S +E    VH F +G
Sbjct: 484 LQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAG 543

Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL---QETSLQ-------------HRERLAVAFGLI 588
           D  +P S+EIY  L  +   +++ G     +++L              H E+LA+ F L+
Sbjct: 544 DTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALL 603

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +T E   IRI  NLR+CGDCH   K+ S++  REI++RD  RFH F+ G CSC DYW
Sbjct: 604 NTQE-YQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 26/166 (15%)

Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
           N ++EN LI+ Y                   +CG L +  ++FD++  RDV SW ++IS 
Sbjct: 322 NLLLENSLIDMYA------------------RCGCLDDAKRVFDRMKFRDVASWTSLISA 363

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST--MK 225
           Y   G     + L ++M   G +PD +  V+++SA +    L+ G+   ++ ++ T   +
Sbjct: 364 YGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGR---IYFKQMTDDYR 420

Query: 226 ISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
           I+  + +Y  LVD+  + G++ EA  ++ +  I+  + V W TL+S
Sbjct: 421 ITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERV-WATLLS 465


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 193/671 (28%), Positives = 331/671 (49%), Gaps = 97/671 (14%)

Query: 58   ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
            ++IH  ++ + L +   +   +    V  G +  A+ +  Q +E ++  WN++I    ++
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 118  GYPQEVFAIYLYLVTRTVL---------LNKC---------------------------- 140
            G  +    ++++L+  ++L         L  C                            
Sbjct: 1015 GLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFV 1074

Query: 141  -----------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
                       GK++E   LF      D+ SWN ++  Y   G + + L L   M   G 
Sbjct: 1075 STALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGE 1134

Query: 190  SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
              D++T+V+   A   L  L+ GK +H  + +    +   + + ++DMY KCG++  A++
Sbjct: 1135 RSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARR 1194

Query: 250  LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQ 305
            +    EI   D V WTT++SG V++ + + A   + +M    V+ +  ++  ++      
Sbjct: 1195 VFS--EIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLV------ 1246

Query: 306  DAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEI 350
                  K+C+ + AL  G  +H  I K   + D               NIE A  LF   
Sbjct: 1247 ------KACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT 1300

Query: 351  SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
            + + +  W ++I   A  G+A++A+  F  M+  G  PD+VTFI +LSACSH GLV E Y
Sbjct: 1301 NTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAY 1360

Query: 411  DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
            +      + Y I+P+++HY C+VD L RAG +EE+   I+SMP     S++ +LL ACR 
Sbjct: 1361 ENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRV 1420

Query: 471  HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
              + +  +   + L   +P +  A+VLL+N+YA A + ++++  R  +R + +KK  G+S
Sbjct: 1421 QVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFS 1480

Query: 531  LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL 575
             ++    VH F +GD  +  ++ IY  +  I   ++++G                +E SL
Sbjct: 1481 WVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSL 1540

Query: 576  -QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
              H E+LA+A+GL+ T   TT+R++ NLR+CGDCHS +K  S+V+ REIV+RD  RFH F
Sbjct: 1541 YYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHF 1600

Query: 635  QGGQCSCRDYW 645
            + G CSC DYW
Sbjct: 1601 RNGICSCGDYW 1611



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 158/334 (47%), Gaps = 40/334 (11%)

Query: 157  DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
            DVI WN  +S +   G   E +     M    V+ D +T V +++    L  LE+GK +H
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 217  LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
              +  S +    S+ N L++MY K G +  A+ + G  +++EVD++ W T++SG   S  
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFG--QMNEVDLISWNTMISGCTLSGL 1016

Query: 277  RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI-GALYHGIWVHVYIKKNQI 335
             + +  +F  ++  +L+     ++ +L        ++C+S+ G  Y    +H    K  +
Sbjct: 1017 EECSVGMFVHLLRDSLLPDQFTVASVL--------RACSSLEGGYYLATQIHACAMKAGV 1068

Query: 336  SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
             +D+               +E A  LF      ++  W +++  Y ++G   KA+ L++ 
Sbjct: 1069 VLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYIL 1128

Query: 381  MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH------YGCMVD 434
            M+E+G + DQ+T +   +A + GGLV      L +  +++ +  K            ++D
Sbjct: 1129 MQESGERSDQITLVN--AAKAAGGLVG-----LKQGKQIHAVVVKRGFNLDLFVTSGVLD 1181

Query: 435  LLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
            +  + G +E +    + +P P DV+ W++++  C
Sbjct: 1182 MYLKCGEMESARRVFSEIPSPDDVA-WTTMISGC 1214



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 101/468 (21%), Positives = 181/468 (38%), Gaps = 85/468 (18%)

Query: 139  KCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMG-MYREGLGLLSKMGAEGVSPDEVT 195
            KCG L    +LFD  P  NRD+++WN ++S   +      +G  L   +    VS    T
Sbjct: 703  KCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHT 762

Query: 196  MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            +  +             ++LH +  +  ++    +   LV++Y K G I EA+ L     
Sbjct: 763  LAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMA 822

Query: 256  IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
            +   DVVLW  ++  YV +    EA  LF E             +G    D   +  S  
Sbjct: 823  VR--DVVLWNVMMKAYVDTCLEYEAMLLFSEFHR----------TGFRPDDVTLRTLSRV 870

Query: 316  SIGALYHGIWVHVYIKKNQISIDNIEL-AYDLFS-EISEKNVYLWTSVIAAYAMAGHAQK 373
                        V  KKN + +   +  A  LF  +    +V +W   ++ +   G A +
Sbjct: 871  ------------VKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWE 918

Query: 374  AIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDFLSKKSRVYNI 422
            A+D F++M  +    D +TF+ +L+  +           HG ++  G D      +V ++
Sbjct: 919  AVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLD------QVVSV 972

Query: 423  KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
                    C++++  +AG +  + +    M    D+  W++++  C      + +   F 
Sbjct: 973  G------NCLINMYVKAGSVSRARSVFGQMN-EVDLISWNTMISGCTLSGLEECSVGMFV 1025

Query: 483  HLTETDPLND---------------GAHVLLANIYA---KAGRLDD-----------MSR 513
            HL     L D               G + L   I+A   KAG + D             R
Sbjct: 1026 HLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKR 1085

Query: 514  IRMKLRDMGLKKQLGYSLIEQGGFVHKF-TSGDIFNPHSEEIYLMLNE 560
             +M+  +     Q G+ L      +H +  SGD   P +  +Y+++ E
Sbjct: 1086 GKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDF--PKALRLYILMQE 1131



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 18/212 (8%)

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           S++       DL +GK  H  +  S       + N L+ MY KCG +  A+KL       
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT---------LMISGMLNQDAE 308
             D+V W  ++S      ++         ++ R+++S T         + +       +E
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 309 FKYKSCASIG----ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364
             +     IG        G  V++Y K        I  A  LF  ++ ++V LW  ++ A
Sbjct: 781 SLHGYAVKIGLQWDVFVAGALVNIYAK-----FGLIREARVLFDGMAVRDVVLWNVMMKA 835

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
           Y       +A+ LF E   TG +PD VT   L
Sbjct: 836 YVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTL 867


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 190/538 (35%), Positives = 284/538 (52%), Gaps = 49/538 (9%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV- 189
           T LL+   KCG L    ++FD +P R+ ++W+ +I  +       +   L   M A+G+ 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 190 --SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
             SP  +   S + A   L  L MG+ LH  L +S +    +  N L+ MY K G I +A
Sbjct: 222 FLSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
             L     +   D V ++ LVSGYV++   +EA  +F +M   N+      +  ++    
Sbjct: 280 IALFDEMAVK--DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI---- 333

Query: 308 EFKYKSCASIGALYHGIWVH--VYIK--KNQISIDN-----------IELAYDLFSEISE 352
                +C+ + AL HG   H  V I+   ++ SI N           I+L+  +F+ +  
Sbjct: 334 ----PACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPS 389

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           +++  W ++IA Y + G  ++A  LFLEM   G  PD VTFI LLSACSH GLV EG  +
Sbjct: 390 RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHW 449

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
                  Y + P+M+HY CMVDLL R G L+E+  FI SMP+  DV +W +LL ACR ++
Sbjct: 450 FHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYK 509

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           N+ L +   + + E  P   G  VLL+NIY+ AGR D+ + +R+  +  G KK  G S I
Sbjct: 510 NIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWI 569

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS----------------LQ 576
           E  G +H F  GD  +P S EIY  L+ I + +++ G Q  +                + 
Sbjct: 570 EINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALIC 629

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
           H E+LA+A+G++S SE  TI +  NLR+CGDCH+ +K  S V  R I++RD  RFH F
Sbjct: 630 HSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 172/369 (46%), Gaps = 47/369 (12%)

Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG-LLS-KM 184
           L   T LL+   KC  L +   +F  +P RD+++WN M++ Y   GMY   +  LLS +M
Sbjct: 45  LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 104

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL--------EESTMKISGSLL--NYL 234
               + P+  T+V+L+    +   L  G ++H +           S  K++  +L    L
Sbjct: 105 QMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTAL 164

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-- 292
           +DMY KCG +  A+++     +   + V W+ L+ G+V  +   +A  LF  M+ + L  
Sbjct: 165 LDMYAKCGSLLYARRVFD--AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 222

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------------- 338
           +S T + S +         ++CAS+  L  G  +H  + K+ +  D              
Sbjct: 223 LSPTSIASAL---------RACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 273

Query: 339 -NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
             I+ A  LF E++ K+   ++++++ Y   G A++A  +F +M+    +PD  T ++L+
Sbjct: 274 GLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLI 333

Query: 398 SACSHGGLVDEGYDFLSKKSRVY-NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
            ACSH   +  G    S  S +   +  +      ++D+  + G ++ S      MP   
Sbjct: 334 PACSHLAALQHGR--CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMP-SR 390

Query: 457 DVSIWSSLL 465
           D+  W++++
Sbjct: 391 DIVSWNTMI 399


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 298/558 (53%), Gaps = 58/558 (10%)

Query: 129 YLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           YL TR ++   KC  L++  ++ D++P ++V+SW  MIS Y+  G   E L + ++M   
Sbjct: 87  YLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRS 146

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
              P+E T  +++++  +   L +GK +H  + +        + + L+DMY K G+I EA
Sbjct: 147 DGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEA 206

Query: 248 QKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMISGM 302
           +++   +E + E DVV  T +++GY +    +EA    +RL  E +  N +++  +++ +
Sbjct: 207 REI---FECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTAL 263

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLF 347
                       + +  L HG   H ++ + ++          ID      N+  A  LF
Sbjct: 264 ------------SGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLF 311

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLF-LEMEETGTKPDQVTFIALLSACSHGGLV 406
             + E+    W +++  Y+  G  ++ ++LF L  +E   KPD VT +A+LS CSHG + 
Sbjct: 312 DNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKME 371

Query: 407 DEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
           D G   YD +      Y IKP  +HYGC+VD+LGRAG ++E+  FI  MP  P   +  S
Sbjct: 372 DTGLSIYDGMVAGE--YGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGS 429

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL ACR H +V + E+    L E +P N G +V+L+N+YA AGR +D++ +R  +    +
Sbjct: 430 LLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAV 489

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------- 570
            K+ G S I+    +H F + D  +P  EE+   + EI + ++Q G              
Sbjct: 490 TKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDE 549

Query: 571 ---QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
              ++  L H E+LA+ FGLI+T E   IR+  NLRIC DCH+F K+ S+V+ RE+ +RD
Sbjct: 550 EQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRD 609

Query: 628 NGRFHRFQGGQCSCRDYW 645
             RFH+   G CSC DYW
Sbjct: 610 KNRFHQIVKGICSCGDYW 627


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 194/696 (27%), Positives = 331/696 (47%), Gaps = 97/696 (13%)

Query: 34  FANVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           ++ + P       V  +C+   +I+   ++H+ ++     +D   +  + +  +  G + 
Sbjct: 195 WSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVD 254

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCG 141
            A  I  +  + ++  WN++I   ++NG+      + L +          T + +L  C 
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314

Query: 142 K--------------------------------------LKEVCQLFDKLPNRDVISWNT 163
                                                  L +  ++FD + +RD+I  N 
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNA 374

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           +IS  +  G + E L L  ++  EG+  +  T+ +++ +   L      + +H    +  
Sbjct: 375 LISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIG 434

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                 ++N L+D Y+KC  + +A ++    E    D++  T++++   + +  + A +L
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDANRVF--EECSSGDIIACTSMITALSQCDHGEGAIKL 492

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI-------- 335
           F EM+ + L     ++S +LN        +CAS+ A   G  VH ++ K Q         
Sbjct: 493 FMEMLRKGLEPDPFVLSSLLN--------ACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 544

Query: 336 ----------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
                     SI++ ELA   FS + E+ V  W+++I   A  GH ++A++LF  M + G
Sbjct: 545 ALVYTYAKCGSIEDAELA---FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEG 601

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
             P+ +T  ++L AC+H GLVDE   + +    ++ I    +HY CM+DLLGRAG L+++
Sbjct: 602 INPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDA 661

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
              + SMP   + SIW +LL A R H++ +L + A + L   +P   G HVLLAN YA A
Sbjct: 662 MELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASA 721

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
           G  ++++++R  ++D  +KK+   S IE    VH F  GD  +P ++EIY  L E+   +
Sbjct: 722 GMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLM 781

Query: 566 QQQGL-------------QETSL---QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
            + G               E  L    H ERLAVAF L+ST     IR+  NLRIC DCH
Sbjct: 782 SKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCH 841

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              K  S++ +REI+IRD  RFH F+ G CSC DYW
Sbjct: 842 VAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 156/341 (45%), Gaps = 49/341 (14%)

Query: 92  AQQIIR----QGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC 147
           +QQ+ R    Q   P   +  S++++  +  +   + + Y          +KC +     
Sbjct: 8   SQQLTRYAAAQALLPGAHLHASLLKSGSLASFRNHLISFY----------SKCRRPCCAR 57

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD++P+   +SW+++++ Y++ G+ R  +     M AEGV  +E  +  ++     + 
Sbjct: 58  RVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VP 114

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D  +G  +H     +       + N LV MY   G + +A+++    +  E + V W  L
Sbjct: 115 DARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEAD-SERNAVSWNGL 173

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYHG 323
           +S YVK+++  +A ++F EMV      W    SG+  Q  EF +     +C     +  G
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMV------W----SGI--QPTEFGFSCVVNACTGSRNIEAG 221

Query: 324 IWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
             VH  + +     D                +++A  +F ++ + +V  W ++I+   + 
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           GH  +AI+L L+M+ +G  P+  T  ++L ACS  G  D G
Sbjct: 282 GHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLG 322


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 177/525 (33%), Positives = 279/525 (53%), Gaps = 87/525 (16%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L++V   F+ +P RD++SWNT+IS     GM+ + L ++ +MG   + PD  T+ S++
Sbjct: 187 GSLRKV---FEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 243

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
               +  +L  GK +H +   +       + + L+DMY KC ++ ++ ++   Y + + D
Sbjct: 244 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF--YMLPQHD 301

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
            + W ++++G V++   DE  + F +M    ++ N +S++ ++             +CA 
Sbjct: 302 GISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMP------------ACAH 349

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           +  L+ G  +H YI                                              
Sbjct: 350 LTTLHLGKQLHGYI---------------------------------------------- 363

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
             + ME  G KP+ V F+A+L+ACSH GLVDE + + +  ++ Y I P ++HY  + DLL
Sbjct: 364 --IRME--GVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL 419

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GR G LEE+  FI+ M I P  S+WS+LL ACR H+N++LAE   K L   DP N GA+V
Sbjct: 420 GRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYV 479

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+NIY+ AGR  D  ++R+ +RD G+KK+   S IE    VH F +GD  +P+ + I  
Sbjct: 480 LLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINE 539

Query: 557 MLNEIEMTLQQQG--LQETSL--------------QHRERLAVAFGLISTSEKTTIRIVN 600
            L  +   ++++G  L  T +               H ERLA+ FG+IST   TTIR+  
Sbjct: 540 ALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTK 599

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLR+C DCH+  K  S++  REIV+RDN RFH F+ G+CSC D+W
Sbjct: 600 NLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 644



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           NGY  +VF I   L+    +  KC ++ + C++F  LP  D ISWN++I+     GM+ E
Sbjct: 265 NGYDADVF-IGSSLID---MYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDE 320

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
           GL    +M    + P+ V+  S++ A   L  L +GK LH ++    +++ G   NY+  
Sbjct: 321 GLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI----IRMEGVKPNYVAF 376

Query: 237 M 237
           M
Sbjct: 377 M 377


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 194/696 (27%), Positives = 331/696 (47%), Gaps = 97/696 (13%)

Query: 34  FANVCPVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLG 90
           ++ + P       V  +C+   +I+   ++H+ ++     +D   +  + +  +  G + 
Sbjct: 195 WSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVD 254

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCG 141
            A  I  +  + ++  WN++I   ++NG+      + L +          T + +L  C 
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314

Query: 142 K--------------------------------------LKEVCQLFDKLPNRDVISWNT 163
                                                  L +  ++FD + +RD+I  N 
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNA 374

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           +IS  +  G + E L L  ++  EG+  +  T+ +++ +   L      + +H    +  
Sbjct: 375 LISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIG 434

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                 ++N L+D Y+KC  + +A ++    E    D++  T++++   + +  + A +L
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDANRVF--EECSSGDIIACTSMITALSQCDHGEGAIKL 492

Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI-------- 335
           F EM+ + L     ++S +LN        +CAS+ A   G  VH ++ K Q         
Sbjct: 493 FMEMLRKGLEPDPFVLSSLLN--------ACASLSAYEQGKQVHAHLIKRQFMSDAFAGN 544

Query: 336 ----------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
                     SI++ ELA   FS + E+ V  W+++I   A  GH ++A++LF  M + G
Sbjct: 545 ALVYTYAKCGSIEDAELA---FSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEG 601

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
             P+ +T  ++L AC+H GLVDE   + +    ++ I    +HY CM+DLLGRAG L+++
Sbjct: 602 INPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDA 661

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
              + SMP   + SIW +LL A R H++ +L + A + L   +P   G HVLLAN YA A
Sbjct: 662 MELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASA 721

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
           G  ++++++R  ++D  +KK+   S IE    VH F  GD  +P ++EIY  L E+   +
Sbjct: 722 GMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLM 781

Query: 566 QQQGL-------------QETSL---QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
            + G               E  L    H ERLAVAF L+ST     IR+  NLRIC DCH
Sbjct: 782 SKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCH 841

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              K  S++ +REI+IRD  RFH F+ G CSC DYW
Sbjct: 842 VAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 155/341 (45%), Gaps = 49/341 (14%)

Query: 92  AQQIIR----QGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVC 147
           +QQ+ R    Q   P   +  S++++  +  +   + + Y          +KC +     
Sbjct: 8   SQQLTRYAAAQALLPGAHLHASLLKSGSLASFRNHLISFY----------SKCRRPCCAR 57

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           + FD++P+   +SW+++++ Y++ G+ R  +     M AEGV  +E  +  ++     + 
Sbjct: 58  RFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VP 114

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D  +G  +H     +       + N LV MY   G + +A+++    +  E + V W  L
Sbjct: 115 DARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEAD-SERNAVSWNGL 173

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYHG 323
           +S YVK+++  +A ++F EMV      W    SG+  Q  EF +     +C     +  G
Sbjct: 174 MSAYVKNDQCGDAIQVFGEMV------W----SGI--QPTEFGFSCVVNACTGSRNIEAG 221

Query: 324 IWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
             VH  + +     D                +++A  +F ++ + +V  W ++I+   + 
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           GH  +AI+L L+M+ +G  P+  T  ++L ACS  G  D G
Sbjct: 282 GHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLG 322


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 180/538 (33%), Positives = 294/538 (54%), Gaps = 41/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L     +F  +  + V SWN +I  +   G   + L    +M   G+ PD+ ++VS
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ A  +L  L+ GK +H F+  + ++++  +   L+ +YF C K    +    R  + +
Sbjct: 523 LLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFER--MGD 580

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            + V W  ++SGY ++   +EA  LF +M+   L    + I+ +L         +C+ + 
Sbjct: 581 KNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILG--------ACSQLS 632

Query: 319 ALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIA 363
           AL  G  VH +  KN +  DN               +  +  +F+ ++ K V  W  +I 
Sbjct: 633 ALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMIT 692

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            + + G   KA++LF +M+ +  +PD+ TF+ +L AC H GLV EG ++L++   +Y ++
Sbjct: 693 GFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLE 752

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P+++HY C++D+LGRAG L E+ NFI  MP  PD  IWSSLL +   + ++++ E   + 
Sbjct: 753 PELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEK 812

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L   +     +++LL+N+YA AG+ D +  +R K++D+ L+K +G S IE  G V+ F +
Sbjct: 813 LLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIA 872

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG-----------LQETSLQ-----HRERLAVAFGL 587
           G+  NP S+EI  M N +E  + + G           L+E   +     H E++A+ FG 
Sbjct: 873 GENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGF 932

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           ++T E TT+RI  NLRIC DCH+  K  S+   REIVIRDN RFH F+ G CSC DYW
Sbjct: 933 LNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 35/297 (11%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPD 192
            L  KCG L E  +LFDK+P +++ISWN++I  ++  G + E       +    +G+ PD
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
             TMV+L+   +   ++++G  +H    +  +     + N L+DMY KCG + EA  L  
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 253 RYEIDEVDVVLWTTLVSGYVKSN----ERDEARRLF--DEMVERNLISWTLMISGMLNQD 306
           +  I+   VV W +++  Y +        D  R+++  +E++E N ++   ++   L + 
Sbjct: 373 K--IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEES 430

Query: 307 A--------------EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352
                           F+YK       L +  ++  Y K       ++  A  +F  ++ 
Sbjct: 431 ELLSLRALHGYSLRHSFQYKE------LINNAFIAAYAK-----CGSLVFAEHVFFGMNT 479

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           K+V  W +VI  +A  G   KA+D + EM   G  PD  + ++LL AC   GL+  G
Sbjct: 480 KSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 169/379 (44%), Gaps = 39/379 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG--VSPDE 193
           + +KCG L E   LF K+ N+ V+SWN+MI  Y+  G   E   LL KM  E   +  +E
Sbjct: 357 MYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNE 416

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           VT+++L+ A  +  +L   + LH +    + +    + N  +  Y KCG +  A+ +   
Sbjct: 417 VTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVF-- 474

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
           + ++   V  W  ++ G+ ++ +  +A   + EM    ++     I  +L         +
Sbjct: 475 FGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL--------LA 526

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNVYL 357
           C  +G L +G  +H ++ +N + +++  +A  L                F  + +KN   
Sbjct: 527 CGRLGLLQYGKEIHGFVLRNGLEMNSF-VAVSLLSLYFHCSKPFYGRTYFERMGDKNSVC 585

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH---GGLVDEGYDFLS 414
           W ++++ Y+      +A+ LF +M   G +PD++   ++L ACS     GL  E + F  
Sbjct: 586 WNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFAL 645

Query: 415 KKSRVYNIKPKMQHYGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           K S + +         C ++D+  ++G L  S      +    +V+ W+ ++     H  
Sbjct: 646 KNSLMED-----NFVACSLMDMYAKSGFLGHSQRIFNRLN-GKEVASWNVMITGFGVHGQ 699

Query: 474 VKLAEHAFKHLTETDPLND 492
              A   F+ +  +D   D
Sbjct: 700 GNKAVELFEDMKRSDKQPD 718



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 14/273 (5%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL-GLLSKMGAEGVSPDEVTMVS 198
           CG   E   +FD+L N+++  WN ++S Y    +Y E +   L  +      PD  T   
Sbjct: 156 CGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPC 215

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           LI A T   D+ +GK++H    +  + +   + N ++ +Y KCG + EA +L  +  + E
Sbjct: 216 LIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDK--MPE 273

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER---------NLISWTLMISGMLNQDAEF 309
            +++ W +L+ G+ ++    EA R F  ++E           +++   + SG  N D   
Sbjct: 274 QNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM 333

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
                A    L H + V   +         +  A  LF +I  K+V  W S+I AY+  G
Sbjct: 334 VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393

Query: 370 HAQKAIDLF--LEMEETGTKPDQVTFIALLSAC 400
              +  DL   + MEE   + ++VT + LL AC
Sbjct: 394 FVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 15/149 (10%)

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGG 404
           +F  +  KN++ W ++++ Y       +AI  FLE+   T  +PD  TF  L+ AC+   
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHY------GCMVDLLGRAGHLEESANFITSMPIPPDV 458
            +  G         V+ +  KM           M+ L G+ G L+E+      MP    +
Sbjct: 225 DIHLG-------KSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLI 277

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           S W+SL+R    +     A  AF+ L E+
Sbjct: 278 S-WNSLIRGFSENGFWLEAYRAFRSLLES 305


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 197/556 (35%), Positives = 290/556 (52%), Gaps = 61/556 (10%)

Query: 132 TRTVLLNKCG------KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           +RT LL  C        L     +   +P+     +N ++            L  LS + 
Sbjct: 37  SRTRLLEHCALSPSPAYLPYAAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTI- 95

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
              + PD +T    + A  +   L     +H  L          L   L+D Y KCG + 
Sbjct: 96  ---LHPDALTFSFSLIASARALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLD 152

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
            AQ++    EI   DV  W  L++G  + ++  EA  LF+ M         + + G L  
Sbjct: 153 SAQRVFD--EIPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGAL-- 208

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL----------------AYDLFSE 349
                  +C+ +GAL  G  VH  ++K  + I N+++                 + +FS 
Sbjct: 209 ------AACSQLGALRAGEGVHACVRKMDLDI-NVQVCNAVIDMYAKCGFADKGFRVFST 261

Query: 350 IS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           ++  K+V  W ++I A+AM G   +A++LF EM +T  + D VT++A+L AC+H GLV+E
Sbjct: 262 MTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEE 321

Query: 409 G---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           G   +D +  +    N+K    HYG +VDLLGRAG L E+   I SMPI PDV +W SLL
Sbjct: 322 GVRLFDEMVGRGVNRNVK----HYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLL 377

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            AC+ + NV++AE A + L E    + G  VLL+N+YA   R +D+ R+R  ++   ++K
Sbjct: 378 GACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRK 437

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL--------- 575
             G+S IE  G +HKF +GD  +P   EIY  L+EI   ++  G + ETSL         
Sbjct: 438 VPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEED 497

Query: 576 ------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
                  H E+LAVAFGLISTSE T IR+  NLRICGDCH  +K+ S++Y++EI++RD  
Sbjct: 498 KENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDRA 557

Query: 630 RFHRFQGGQCSCRDYW 645
           RFHRF+ G CSCRDYW
Sbjct: 558 RFHRFKDGSCSCRDYW 573


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 294/540 (54%), Gaps = 34/540 (6%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           +  L++ G ++  C +F ++       +NTMI    +     E L L  +M   G+ PD 
Sbjct: 72  SCALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDN 131

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T   ++ A + L  L+ G  +H  + ++ +++   + N L+ MY KCG I  A  +   
Sbjct: 132 FTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVF-- 189

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE--RNLISWTLMISGMLNQDAEFKY 311
            ++DE  V  W++++  +       E   L  +M    R+    ++++S +    +   +
Sbjct: 190 EQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSAL----SACTH 245

Query: 312 KSCASIGALYHGIWV------HVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSV 361
               ++G   HGI +      +V +K + I +     ++E    +F  ++ KN Y +T +
Sbjct: 246 LGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVM 305

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           IA  A+ G  ++A+ +F +M E G  PD V ++ +LSACSH GLV+EG    ++    + 
Sbjct: 306 IAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHM 365

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           IKP +QHYGCMVDL+GRAG L+E+ + I SMPI P+  +W SLL AC+ H N+++ E A 
Sbjct: 366 IKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAA 425

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           +++   +  N G +++LAN+YA+A +  +++RIR ++ +  L +  G+SL+E    V+KF
Sbjct: 426 ENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKF 485

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAF 585
            S D   P  E IY M+ ++E  L+ +G      Q                H ++LA+AF
Sbjct: 486 VSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAF 545

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            LI TSE + IRI  NLR+C DCH++ K  S +Y REI +RD  RFH F+ G CSC+DYW
Sbjct: 546 ALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 203/605 (33%), Positives = 307/605 (50%), Gaps = 69/605 (11%)

Query: 77  TQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT 134
           T +    + TG +  A++        + ++  WN+     ++NGY               
Sbjct: 156 TTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNA-----MVNGYCNN------------ 198

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDE 193
                 G++ +  +LF ++P+RDVISW ++I      G   + L     M G  GV    
Sbjct: 199 ------GRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISS 252

Query: 194 VTMVSLISARTKLRDLEMGKNLH--LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
            T+V  +SA  K+ D   G  +H  +F       +   +   LV  Y  C ++G+A K+ 
Sbjct: 253 TTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKVF 312

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
           G  E    +VV+WT L++G   +++  EA  +F EM+  N++      +  LN       
Sbjct: 313 G--ETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALN------- 363

Query: 312 KSCASIGALYHGIWVHVY-IK---KNQISIDN-----------IELAYDLFSEISEKNVY 356
            SC  +  L  G  +H   IK   +N +   N           I  A  +F  I EKNV 
Sbjct: 364 -SCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVV 422

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W SVI   A  G    A+ LF EM   G + D++T   LLSACS  G++ +   F    
Sbjct: 423 SWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARCFFGYF 482

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           +R  ++K  ++HY CMVD+LGR G +EE+    TSMP+  +  +W  LL ACR H ++ +
Sbjct: 483 ARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVHSSLDV 542

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
           AE A K + E +P    A+VLL+N+YA + R  +++RIRMK++  G+ KQ G S I   G
Sbjct: 543 AERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSWITLKG 602

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTL--------QQQGLQETSLQ--------HRER 580
             H+F S D  +P +EEIY  L  + + L        QQ  L +  ++        H ER
Sbjct: 603 MRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQNEEMLSYHSER 662

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+AFGL+ST E +TI I+ NLR+CGDCH+ + + +++ NREIV+RD+ RFH F+ G CS
Sbjct: 663 LAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRFHHFKNGICS 722

Query: 641 CRDYW 645
           C DYW
Sbjct: 723 CGDYW 727



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 124/300 (41%), Gaps = 47/300 (15%)

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
           KL     +F+K+P+  V  +  ++  Y       E + L +++ +   + D ++  S+I 
Sbjct: 72  KLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSN--TKDTISWNSVIK 129

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
           A     D      L    +E   + S S    ++  +   G++ EA++        + DV
Sbjct: 130 ASIICNDFVTAVKL---FDEMPQRNSISWTT-IIHGFLSTGRVNEAERFFNAMPYVDKDV 185

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDAEFKYK----- 312
             W  +V+GY  +   ++A RLF +M  R++ISWT +I G+     +  A F +K     
Sbjct: 186 ATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGF 245

Query: 313 ---------------SCASIGALYHGIWVHVYIKKNQI-----------------SIDNI 340
                          + A I   Y GI +H  + K                    S   +
Sbjct: 246 SGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRM 305

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
             A  +F E   KNV +WT+++    +     +A+++F EM      P++ +F + L++C
Sbjct: 306 GDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSC 365



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 56/269 (20%)

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           SL   L+  Y     + EA  L  +   +  D + W +++   +  N+   A +LFDEM 
Sbjct: 89  SLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEMP 148

Query: 289 ERNLISWTLMISGMLN----QDAE-------FKYKSCASIGALYHGIWVHVYIKKNQISI 337
           +RN ISWT +I G L+     +AE       +  K  A+  A+ +G     Y    +++ 
Sbjct: 149 QRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAMVNG-----YCNNGRVND 203

Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE-TGTKPDQVTFIAL 396
                A  LF ++  ++V  WTS+I      G + +A+  F  M   +G      T +  
Sbjct: 204 -----ALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCG 258

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE--SANFIT---- 450
           LSA                 +++ +    +Q + CM    G    L+E  SA+ +T    
Sbjct: 259 LSA----------------AAKILDFYAGIQIHCCMFK-FGFCCGLDEFVSASLVTFYAS 301

Query: 451 -----------SMPIPPDVSIWSSLLRAC 468
                         +  +V +W++LL  C
Sbjct: 302 CKRMGDACKVFGETVCKNVVVWTALLTGC 330


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 198/665 (29%), Positives = 331/665 (49%), Gaps = 87/665 (13%)

Query: 60  IHSHLITTNLMRDPQI--STQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
           IHSHLI T+   +  I     +  F      +  A  +  +  E  +  W++++   L+N
Sbjct: 51  IHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLN 110

Query: 118 GYPQEV-----------------------------------------------FAIYLYL 130
           G+  +V                                               F+ + Y+
Sbjct: 111 GFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYV 170

Query: 131 VTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
               V + +KC  +++   +++++P  D++++N+++S     G  REGL +L  M +E V
Sbjct: 171 RNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESV 230

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
             D+VT V+  S    L+DL +G ++H  +  S ++    + + +++MY KCGK      
Sbjct: 231 KWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGK-----S 285

Query: 250 LLGRYEIDEV---DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           L+ R   D +   +VVLWT +++   ++   +EA  LF +M + N+ S     + +LN  
Sbjct: 286 LMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNAC 345

Query: 307 AEFKYKSCASIGALYHG------IWVHVYIKKNQISI----DNIELAYDLFSEISEKNVY 356
           A     S    G+L HG         HV +    I++     +IE A  +FS++  +++ 
Sbjct: 346 AGL---SARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDII 402

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W ++I  ++  G  +KA+ +F +M      P+ VTF  +LSAC H GLV EG+ +L   
Sbjct: 403 TWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHL 462

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            + + ++P ++HY C+V LL + G L E+ NF+ + P+  DV  W +LL AC  HQN  L
Sbjct: 463 MKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGL 522

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
                + + E DP + G + LL+NIYAK  R D + ++R  +RD  +KK+ G S IE G 
Sbjct: 523 GRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGN 582

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRER 580
             H FTS D  +P   + Y  + E+   ++  G                +E  L  H E+
Sbjct: 583 VTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEK 642

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+A+GL+    + +I ++ NLRIC DCHS +++ S+V NR IV+RD  RFH F+ G+CS
Sbjct: 643 LAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCS 702

Query: 641 CRDYW 645
           C DYW
Sbjct: 703 CLDYW 707


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 194/625 (31%), Positives = 313/625 (50%), Gaps = 76/625 (12%)

Query: 60  IHSHLITTNLMRDP-QISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           +H+H+I T L  +   I   +      +G +  A  +     E +   WNS     LI+G
Sbjct: 326 VHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNS-----LISG 380

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYT-SMGMYREG 177
             Q                N+C +  +  ++F  +P  D +SWN++I   + S     + 
Sbjct: 381 LDQ----------------NECSE--DAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQA 422

Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
           +    +M   G     VT ++++SA + L   E+   +H  + +  +    ++ N L+  
Sbjct: 423 VKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSC 482

Query: 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWT 296
           Y KCG++ E +K+  R   +  D V W +++SGY+            +E++ + + + W 
Sbjct: 483 YGKCGEMNECEKIFARMS-ETRDEVSWNSMISGYIH-----------NELLHKAMDLVWF 530

Query: 297 LMISGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISID---------------N 339
           +M  G       F     +CAS+  L  G+ VH    +  +  D                
Sbjct: 531 MMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGR 590

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           I+ A   F  +  +NVY W S+I+ YA  GH +KA+ LF  M   G  PD VTF+ +LSA
Sbjct: 591 IDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSA 650

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           CSH G V+EG++     S VY + P+++H+ CMVDLLGRAG L+E  +FI SMP+ P+V 
Sbjct: 651 CSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVL 710

Query: 460 IWSSLLRACRCH---QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516
           IW ++L AC C    +N +L   A + L E +P N   +VLLAN+YA   + +D+++ R 
Sbjct: 711 IWRTVLGAC-CRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKART 769

Query: 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL 575
            +++  +KK+ G S +     VH F +GD  +P  + IY  L E+   ++  G + +T  
Sbjct: 770 AMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKY 829

Query: 576 Q---------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
                           H E++AVAF +++      IRI+ NLR+CGDCHS     S++  
Sbjct: 830 ALFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVG 888

Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
           R+IV+RD+ RFH F+ G+CSC DYW
Sbjct: 889 RQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/458 (20%), Positives = 174/458 (37%), Gaps = 72/458 (15%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK---IWNSI 110
           +D ++   SH  TT        S++ FE L+         +  R+     IK   + N  
Sbjct: 81  VDHYKTSTSHCNTTLFS-----SSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLF 135

Query: 111 IENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS 170
           + N LIN        IY+          + G L    +LFD++ NR++++W  +IS YT 
Sbjct: 136 LSNTLIN--------IYV----------RIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 177

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISA--RTKLRDLEMGKNLHLFLEESTMKISG 228
            G   E       M   G  P+     S + A   +     ++G  +H  + ++      
Sbjct: 178 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 237

Query: 229 SLLNYLVDMYFKC-GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
            + N L+ MY  C     +A+ +     I   + + W +++S Y +  +   A  LF  M
Sbjct: 238 VVCNVLISMYGSCLDSANDARSVFDGIGIR--NSISWNSIISVYSRRGDAVSAYDLFSSM 295

Query: 288 VERNL-------------------------ISWTLMISGMLNQDAEFK---YKSCASIGA 319
            +  L                         +   ++ +G+ +             A  GA
Sbjct: 296 QKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGA 355

Query: 320 LYHGIWV-HVYIKKNQISIDNI----------ELAYDLFSEISEKNVYLWTSVIAAYAMA 368
           +     V  + ++K+ +S +++          E A ++FS + E +   W SVI A + +
Sbjct: 356 IADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDS 415

Query: 369 -GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
                +A+  FL+M   G    +VTFI +LSA S   L +  +   +   + Y +     
Sbjct: 416 EASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLK-YCLSDDTA 474

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
               ++   G+ G + E       M    D   W+S++
Sbjct: 475 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMI 512


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 290/541 (53%), Gaps = 27/541 (4%)

Query: 129 YLVTRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           YL  R +L++ KCG + +  +LFD++P ++++SWNT+I      G Y E   L   M   
Sbjct: 167 YLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQX 226

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
                    V++I A   L  +  G+ LH    ++ +     +   L+DMY KCG I +A
Sbjct: 227 FSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDA 286

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGML 303
           Q +    ++ E   V W ++++GY      +EA  ++ EM    V+ +  +++++I  + 
Sbjct: 287 QCVFD--QMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIR-IC 343

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWT 359
            + A  ++   A  G + HG  + +      + +      IE A  +F  +  KNV  W 
Sbjct: 344 ARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWN 403

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           ++IA Y   G   +A+++F  M   G  P+ VTF+A+LSACS+ GL D G++     SR 
Sbjct: 404 ALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRD 463

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           + IKP+  HY CM++LLGR G L+E+   I   P  P V++W++LL ACR H+N +L + 
Sbjct: 464 HKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKF 523

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A + L    P     +V+L NIY  +GRL++ + +   L+  GL+     S IE     +
Sbjct: 524 AAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPY 583

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQHRERLAVA 584
            F SGD  +  S+EIY  L+E+ + + + G                +   L H E+LA+A
Sbjct: 584 GFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVDEQEERVLLYHSEKLAIA 643

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLI+TS+ T ++IV + RICGDCHS +K+ + V  REIV+RD  RFH F+ G CSC DY
Sbjct: 644 FGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDY 703

Query: 645 W 645
           W
Sbjct: 704 W 704


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 293/540 (54%), Gaps = 34/540 (6%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T  L++ G ++  C +F ++       +NTMI    +     E L L  +M   G+ PD 
Sbjct: 71  TCALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDN 130

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T   ++ A + L  L+ G  +H  + ++ ++    + N L++MY KCG I  A  +   
Sbjct: 131 FTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVF-- 188

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE--RNLISWTLMISGMLNQDAEFKY 311
            ++DE  V  W++++  +       E   L  +M    R+    ++++S +    +   +
Sbjct: 189 EQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSAL----SACTH 244

Query: 312 KSCASIGALYHGIWV------HVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSV 361
               + G   HGI +      +V +K + I +     ++E    +F  +++KN Y +T +
Sbjct: 245 LGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVI 304

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I   A+ G  ++A+ +F +M E G  PD V ++ +LSACSH GLV+EG    ++    + 
Sbjct: 305 ITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHK 364

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           IKP +QHYGCMVDL+GRAG L+ + + I SMPI P+  +W SLL AC+ H N+++ E A 
Sbjct: 365 IKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAA 424

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           +++ + +  N G +++LAN+YA+A +  D++RIR ++ +  L +  G+SL+E    V+KF
Sbjct: 425 ENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEANRNVYKF 484

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAF 585
            S D   P  E IY M+ ++E  L+ +G      Q                H ++LA+AF
Sbjct: 485 VSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAF 544

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            LI TSE + IRI  N+R+C DCH++ K  S +Y REI +RD  RFH F+ G CSC+DYW
Sbjct: 545 ALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 283/534 (52%), Gaps = 51/534 (9%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKL 206
            LFD++P+     +N++I    + G     L +  +M   G   P+  T+   + A   +
Sbjct: 130 NLFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAAV 188

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
                G+ LH       +  S  +   L+++Y KC ++  A+ +      D+ ++V W+ 
Sbjct: 189 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDK-NLVAWSA 247

Query: 267 LVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           +VSGY +    +EA  LF EM    VE + ++   +IS            +CA  GAL  
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVIS------------ACAKAGALDL 295

Query: 323 GIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G WVH YI +  I++D                IE A  +F  + EK+   W+++I  +A+
Sbjct: 296 GKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAI 355

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G  + A+ LF  M E   +P+ VTFI +LSAC+H GLV++G  + S    +  IKP M+
Sbjct: 356 HGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL-GIKPSME 414

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           +YGCMVDLL R+G L+++ +F+  MP+ P+  IW +LL AC+    + +AE A K L E 
Sbjct: 415 NYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLEL 474

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P N   +VLL+N+YA   + D +S +R K++   +    G S IE  G +H+F   D  
Sbjct: 475 EPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDS 534

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTS 591
           +P   EI L+L E+   +++ G                +E +L QH ERLA+A+GL+ T 
Sbjct: 535 HPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTR 594

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
               IR+V NLR C DCH   K+ S+ YNREIV+RD  RFH+F GG CSC+D+W
Sbjct: 595 APHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 5/153 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++    +FD +  +D  +W+ MI  +   G+  + LGL S+M    V P+ VT + 
Sbjct: 324 KCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIG 383

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           ++SA      +E G+     ++   + I  S+ NY  +VD+  + G + +A   +    +
Sbjct: 384 VLSACAHSGLVEDGRRYWSIMQ--NLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPV 441

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
              + V+W TL+     SN  D A      ++E
Sbjct: 442 SP-NSVIWRTLLVACKSSNRIDIAESATKRLLE 473


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 283/534 (52%), Gaps = 51/534 (9%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS-PDEVTMVSLISARTKL 206
            LFD++P+     +N++I    + G     L +  +M   G   P+  T+   + A   +
Sbjct: 81  NLFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAAV 139

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
                G+ LH       +  S  +   L+++Y KC ++  A+ +      D+ ++V W+ 
Sbjct: 140 PAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDK-NLVAWSA 198

Query: 267 LVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
           +VSGY +    +EA  LF EM    VE + ++   +IS            +CA  GAL  
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVIS------------ACAKAGALDL 246

Query: 323 GIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G WVH YI +  I++D                IE A  +F  + EK+   W+++I  +A+
Sbjct: 247 GKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAI 306

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G  + A+ LF  M E   +P+ VTFI +LSAC+H GLV++G  + S    +  IKP M+
Sbjct: 307 HGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL-GIKPSME 365

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           +YGCMVDLL R+G L+++ +F+  MP+ P+  IW +LL AC+    + +AE A K L E 
Sbjct: 366 NYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLEL 425

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P N   +VLL+N+YA   + D +S +R K++   +    G S IE  G +H+F   D  
Sbjct: 426 EPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDS 485

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTS 591
           +P   EI L+L E+   +++ G                +E +L QH ERLA+A+GL+ T 
Sbjct: 486 HPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTR 545

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
               IR+V NLR C DCH   K+ S+ YNREIV+RD  RFH+F GG CSC+D+W
Sbjct: 546 APHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 5/153 (3%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++    +FD +  +D  +W+ MI  +   G+  + LGL S+M    V P+ VT + 
Sbjct: 275 KCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIG 334

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           ++SA      +E G+     ++   + I  S+ NY  +VD+  + G + +A   +    +
Sbjct: 335 VLSACAHSGLVEDGRRYWSIMQ--NLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPV 392

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
              + V+W TL+     SN  D A      ++E
Sbjct: 393 SP-NSVIWRTLLVACKSSNRIDIAESATKRLLE 424


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/553 (33%), Positives = 289/553 (52%), Gaps = 70/553 (12%)

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           R+   W  +I  Y   G + E + +   M  E ++P   T  +L+ A   ++DL +G+  
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171

Query: 216 HLFLEESTMKISGSLL----NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           H      T ++ G       N ++DMY KC  I  A+K+    E+ E DV+ WT L++ Y
Sbjct: 172 H----AQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFD--EMPERDVISWTELIAAY 225

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE----FKY---------------- 311
            +    + A  LF+ +  +++++WT M++G   Q+A+     +Y                
Sbjct: 226 ARVGNMECAAELFESLPTKDMVAWTAMVTG-FAQNAKPQEALEYFDRMEKSGIRADEVTV 284

Query: 312 ----KSCASIGALYHGIWV-------------HVYIKKNQISI----DNIELAYDLFSEI 350
                +CA +GA  +                 HV I    I +     N+E A ++F  +
Sbjct: 285 AGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344

Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEG 409
           + KNV+ ++S+I   A  G AQ+A+ LF  M  +T  KP+ VTF+  L ACSH GLVD+G
Sbjct: 345 NNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQG 404

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
                   + + ++P   HY CMVDLLGR G L+E+   I +M + P   +W +LL ACR
Sbjct: 405 RQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACR 464

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            H N ++AE A +HL E +P   G ++LL+N+YA AG    + R+R  +++ GLKK    
Sbjct: 465 IHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAV 524

Query: 530 S-LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE---------------- 572
           S ++++ G +HKF  G++ +P S +I   L E+   L   G Q                 
Sbjct: 525 SWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRL 584

Query: 573 TSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
             +QH E+LA+AF L++T+  +TI I+ NLR+C DCH FM++ S+V  + I++RDN RFH
Sbjct: 585 ILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFH 644

Query: 633 RFQGGQCSCRDYW 645
            F+ G CSC D+W
Sbjct: 645 HFRSGDCSCGDFW 657



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 147/370 (39%), Gaps = 57/370 (15%)

Query: 37  VCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF----LVFTGDLGYA 92
           + PVS     + ++C ++ +           NL R  Q   Q F       V+ G+    
Sbjct: 145 ITPVSFTFSALLKACGTMKDL----------NLGR--QFHAQTFRLRGFCFVYVGNTMID 192

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152
             +  +  +   K+++ + E  +I+    E+ A Y           + G ++   +LF+ 
Sbjct: 193 MYVKCESIDCARKVFDEMPERDVISW--TELIAAYA----------RVGNMECAAELFES 240

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           LP +D+++W  M++ +      +E L    +M   G+  DEVT+   ISA  +L   +  
Sbjct: 241 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300

Query: 213 KNLHLFLEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
                  ++S    S  ++  + L+DMY KCG + EA  +     ++  +V  +++++ G
Sbjct: 301 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF--MSMNNKNVFTYSSMILG 358

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
                   EA  LF  MV +                 E K  +   +GAL       +  
Sbjct: 359 LATHGRAQEALHLFHYMVTQT----------------EIKPNTVTFVGALMACSHSGLVD 402

Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
           +  Q+     +  Y  F     ++ Y  T ++      G  Q+A++L   M     +P  
Sbjct: 403 QGRQV----FDSMYQTFGVQPTRDHY--TCMVDLLGRTGRLQEALELIKTMS---VEPHG 453

Query: 391 VTFIALLSAC 400
             + ALL AC
Sbjct: 454 GVWGALLGAC 463


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/364 (40%), Positives = 219/364 (60%), Gaps = 31/364 (8%)

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYL 357
           +CA +GAL  G W HVY+ K+ + +++               ++LA  LF ++  ++   
Sbjct: 159 ACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLC 218

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           + ++I  +A+ G+  +A+DLF +M   G  PD VT +  + +CSH GLV+EG D      
Sbjct: 219 YNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMK 278

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
            VY ++PK++HYGC+VDLLGRAG L E+   + +MP+ P+  IW SLL A R H N+++ 
Sbjct: 279 EVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIG 338

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           E   KHL + +P   G +VLL+N+YA   R DD+ R+R  ++D G+ K  G SL+E GG 
Sbjct: 339 EVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGA 398

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERL 581
           +H+F  GD  +P S+EIYL L E+   L + G +  +L+                H ERL
Sbjct: 399 MHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERL 458

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AF LI++     IRI+ NLR+CGDCH+  K+ S++Y REI++RD  RFH F+ G CSC
Sbjct: 459 AIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSC 518

Query: 642 RDYW 645
            DYW
Sbjct: 519 SDYW 522



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG L   CQLFD+LP+RD + +N MI  +   G   + L L  KM  EG++PD+VT
Sbjct: 194 MYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVT 253

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
           +V  + + + +  +E G ++   ++E    +   L +Y  LVD+  + G++ EA++ +  
Sbjct: 254 LVVTMCSCSHVGLVEEGCDVFESMKE-VYGVEPKLEHYGCLVDLLGRAGRLREAEERVLN 312

Query: 254 YEIDEVDVVLWTTLVSG 270
             +   + V+W +L+  
Sbjct: 313 MPMKP-NAVIWRSLLGA 328



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP--KMQHY 429
           +  + LF+EM+++  K ++VT +AL+SAC+  G + +G       + VY +K   K+ H+
Sbjct: 132 KSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQG-----AWAHVYVLKHNLKLNHF 186

Query: 430 --GCMVDLLGRAGHLEESANFITSMP 453
               ++D+  + G L+ +      +P
Sbjct: 187 VGTALIDMYSKCGCLDLACQLFDQLP 212


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 188/591 (31%), Positives = 296/591 (50%), Gaps = 68/591 (11%)

Query: 86  TGDLGYAQQI----IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCG 141
           TG+L Y Q I     + G E ++ + N+++   + NG                     C 
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNG---------------------C- 465

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            + +  +L++ + +RD+ISWN  +S     GMY   L +   M  EG  P+  T +S++ 
Sbjct: 466 -VHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
           + + L D+  G+ +H  + ++ +  +  +   L+DMY KC  + +A     R  +   D+
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR--DL 582

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
             WT +++ Y ++N+ ++A   F +M +  +      ++G L+         C+S+ +L 
Sbjct: 583 FTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLS--------GCSSLASLE 634

Query: 322 HGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYA 366
            G  +H  + K+    D                +E A  LF  +  ++   W ++I  YA
Sbjct: 635 GGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA 694

Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
             G   KA+  F  M + G  PD VTF  +LSACSH GLV+EG +  +   R + I P +
Sbjct: 695 QNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTV 754

Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
            H  CMVD+LGR G  +E  +FI  M +  +  IW ++L A + H N+ L E A   L E
Sbjct: 755 DHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE 814

Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
             P  + +++LL+NI+A  GR DD+ R+R  +   G+KK+ G S +E  G VH F S D 
Sbjct: 815 LQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDY 874

Query: 547 FNPHSEEIYLMLNEIEMTLQQ-----------QGLQETSLQ-----HRERLAVAFGLIST 590
            +P  +EI+L L+E++  L               + ET  +     H ERLA+ F LIST
Sbjct: 875 SHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALIST 934

Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           S +  IRI  NLRIC DCH  MK  S + N+EIV+RD  RFH F+ G CSC
Sbjct: 935 SSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 163/354 (46%), Gaps = 31/354 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG   +   +F  +   D++ W+ +I+C    G   E + L   M      P++ T
Sbjct: 358 MYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYT 417

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + SL+SA T   +L+ G+++H  + +   +   ++ N LV MY K G + +  KL   YE
Sbjct: 418 ICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL---YE 474

Query: 256 -IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + + D++ W   +SG       D    +F  M+E   I        +L         SC
Sbjct: 475 SMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG--------SC 526

Query: 315 ASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWT 359
           + +  +++G  VH +I KNQ+  +N               +E A   F+ +S ++++ WT
Sbjct: 527 SCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWT 586

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
            +I  YA     +KA++ F +M++ G KP++ T    LS CS    ++ G    S   + 
Sbjct: 587 VIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKS 646

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
            ++   M     +VD+  + G +EE+     ++ I  D   W++++  C   QN
Sbjct: 647 GHV-SDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTII--CGYAQN 696



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 107/484 (22%), Positives = 202/484 (41%), Gaps = 96/484 (19%)

Query: 95  IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154
           I++    P+  +W S     L+N Y +  ++ Y  LV                    K+P
Sbjct: 138 IVKDVINPDSHLWVS-----LVNVYAKCRYSAYARLV------------------LAKMP 174

Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
           +RDV+SW  +I    + G   + + L  +M  EG+ P+E T+ + + A +    L++GK 
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
           +H    +  + +   + + LVD+Y KCG+I  A K+     + E + V W  L++GY + 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF--IGMPEQNDVTWNVLLNGYAQR 292

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI---- 330
            +     +LF  M+E ++      ++ +L        K CA+   L  G  +H  I    
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVL--------KGCANSKNLKQGQVIHSLIIKCG 344

Query: 331 ---------------KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
                           K  ++ID    A  +F  I + ++ +W+++I      G ++++I
Sbjct: 345 YEGNEFIGCGLVDMYSKCGLAID----AIGVFKTIKKPDIVVWSALITCLDQQGQSEESI 400

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
            LF  M    T P+Q T  +LLSA ++ G +  G    +   + Y  +  +     +V +
Sbjct: 401 KLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTM 459

Query: 436 LGRAGHLEESANFITSM-----------------------PIP-----------PDVSIW 461
             + G + +      SM                       P+            P++  +
Sbjct: 460 YMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTF 519

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA--NIYAKAGRLD--DMSRIRMK 517
            S+L +C C  +V        H+ + + L+D   V  A  ++YAK   L+  D++  R+ 
Sbjct: 520 ISILGSCSCLFDVHYGRQVHAHIIK-NQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLS 578

Query: 518 LRDM 521
           +RD+
Sbjct: 579 VRDL 582


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 175/484 (36%), Positives = 272/484 (56%), Gaps = 43/484 (8%)

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV PD+    S   A   L   ++G+++H F  ++       + + +VDMY KCG+IG+A
Sbjct: 5   GVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDA 64

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           +K+    E+ + +VV W+ ++ GY +  E +EA RLF + +  +L       S ++    
Sbjct: 65  RKMFD--EMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCG 122

Query: 308 EFKYKSCASIGALYHGIWVHV------YIKKNQISIDN----IELAYDLFSEISEKNVYL 357
                +   +G   HG+ +        ++  + IS+ +    IE AY +F EI  +N+ +
Sbjct: 123 N---STLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLGM 179

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           W +++ A A   H +KA DLF +ME  G KP+ +TF+ +L ACSH GLV++G  F  +  
Sbjct: 180 WNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKG-QFYFELM 238

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
           + Y I+P  QHY  MVDLLGRAG L+++ + I  MP+ P  S+W +LL  CR H + +LA
Sbjct: 239 KEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTELA 298

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
                 + E  P++           + AGR ++ +R R  LRD G+KK+ G S +E+G  
Sbjct: 299 SFVADRVFELGPVS-----------SAAGRYEEAARARKMLRDQGVKKETGLSWVEEGNR 347

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQE--------TSLQHRERL 581
           +H F +GD  +P++++IY  L E+   +++ G        LQE        T   H ERL
Sbjct: 348 IHTFAAGDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQEVDGEEKNQTIRYHSERL 407

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AFGLIS   +  IR++ NLR+CGDCH+ +K  S+   R I++RDN RFHRF+ G CSC
Sbjct: 408 AIAFGLISFPPERPIRVMKNLRVCGDCHTAIKFMSKCCGRTIIVRDNNRFHRFEDGNCSC 467

Query: 642 RDYW 645
           RDYW
Sbjct: 468 RDYW 471



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 75/159 (47%), Gaps = 1/159 (0%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG +++   +F ++P R++  WN M+          +   L  +M   G+ P+ +T
Sbjct: 155 LYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFIT 214

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
            + ++ A +    +E G+     ++E  ++        +VD+  + GK+ +A  ++ +  
Sbjct: 215 FLCVLYACSHAGLVEKGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMP 274

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           ++  + V W  L++G     + + A  + D + E   +S
Sbjct: 275 MEPTESV-WGALLTGCRIHGDTELASFVADRVFELGPVS 312


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 177/537 (32%), Positives = 280/537 (52%), Gaps = 40/537 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L       +K+  +  ++   ++  YT     R+ L L SKM +EGV  D      
Sbjct: 227 KCGWLDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSI 286

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A   L DL  GK +H +  +  ++   S+   LVD Y KC +   A++      I E
Sbjct: 287 ILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFE--SIHE 344

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            +   W+ L++GY +S + D A  +F  +  + ++  + + + +        +++C+++ 
Sbjct: 345 PNDFSWSALIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNI--------FQACSAVS 396

Query: 319 ALYHGIWVHV-YIKKNQIS--------------IDNIELAYDLFSEISEKNVYLWTSVIA 363
            L  G  +H   IKK  ++                 ++ A+  F  I + +   WT++I 
Sbjct: 397 DLICGAQIHADAIKKGLVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIIC 456

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           A+A  G A +A+ LF EM+ +G +P+ VTFI LL+ACSH GLV EG  FL   +  Y + 
Sbjct: 457 AHAYHGKASEALRLFKEMQGSGVRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVN 516

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P + HY CM+D+  RAG L E+   I SMP  PDV  W SLL  C   +N+++   A  +
Sbjct: 517 PTIDHYNCMIDIYSRAGLLLEALEVIRSMPFEPDVMSWKSLLGGCWSRRNLEIGMIAADN 576

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           +   DPL+   +V++ N+YA AG+ D+ ++ R  + +  L+K++  S I   G VH+F  
Sbjct: 577 IFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVV 636

Query: 544 GDIFNPHSEEIYLMLNEIEMTL---QQQGLQETS------------LQHRERLAVAFGLI 588
           GD  +P +E+IY  L E+ ++    +++ L E +            L H ERLA+A+GLI
Sbjct: 637 GDRHHPQTEQIYSKLKELNVSFKKGEERLLNEENALCDFTERKDQLLDHSERLAIAYGLI 696

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            T+  T I +  N R C DCH F K  S V  RE+V+RD  RFH    G+CSCRDYW
Sbjct: 697 CTAADTPIMVFKNTRSCKDCHEFAKRVSVVTGRELVVRDGNRFHHINSGECSCRDYW 753



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 14/126 (11%)

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQIS---IDNIEL-----------AYDLFSEISEK 353
           E+ +K C ++GAL  G   H  +++   S   IDN  L           A   F +I ++
Sbjct: 84  EYLFKMCGTLGALSDGKLFHNRLQRMANSNKFIDNCILQMYCDCKSFTAAERFFDKIVDR 143

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
           ++  W ++I+AY   G   +A+ LFL M + G  P+   F  L+ + +   ++D G    
Sbjct: 144 DLSSWATIISAYTEEGRIDEAVGLFLRMLDLGIIPNFSIFSTLIMSFADPSMLDLGKQIH 203

Query: 414 SKKSRV 419
           S+  R+
Sbjct: 204 SQLIRI 209


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 198/593 (33%), Positives = 305/593 (51%), Gaps = 62/593 (10%)

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL-FD 151
           + I+R G  P +K    +  + ++ GY +        L+T+ + L    +      L F 
Sbjct: 13  EAIVRAG--PRVKQLQQVHAHLIVTGYGRS-----RSLLTKLITLACSARAIAYTHLLFL 65

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
            +P  D   +N++I   + + +    +    +M +  VSP   T  S+I +   L  L +
Sbjct: 66  SVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRI 125

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           GK +H     S   +   +   LV  Y KCG +  A+++  R  + E  +V W +LVSG+
Sbjct: 126 GKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDR--MPEKSIVAWNSLVSGF 183

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVY 329
            ++   DEA ++F +M E          SG     A F     +CA  GA+  G WVH Y
Sbjct: 184 EQNGLADEAIQVFYQMRE----------SGFEPDSATFVSLLSACAQTGAVSLGSWVHQY 233

Query: 330 IKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           I    + ++               ++  A ++F ++ E NV  WT++I+AY   G+ Q+A
Sbjct: 234 IISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQA 293

Query: 375 IDLFLEMEE-TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           ++LF +ME+  G  P+ VTF+A+LSAC+H GLV+EG     + ++ Y + P ++H+ CMV
Sbjct: 294 VELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMV 353

Query: 434 DLLGRAGHLEESANFI-----TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           D+LGRAG L+E+  FI     T     P  ++W+++L AC+ H+N  L     K L   +
Sbjct: 354 DMLGRAGFLDEAYKFIHQLDATGKATAP--ALWTAMLGACKMHRNYDLGVEIAKRLIALE 411

Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
           P N G HV+L+NIYA +G+ D++S IR  +    L+KQ+GYS+IE     + F+ GD  +
Sbjct: 412 PDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESH 471

Query: 549 PHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSE 592
             + EIY  L  +    ++ G    S +                H E+LAVAFGL+ T +
Sbjct: 472 QETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD 531

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              I IV NLRIC DCHS  K  S V NR+I +RD  RFH FQ G CSC DYW
Sbjct: 532 -VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 54/290 (18%)

Query: 35  ANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
           +NV P +     V +SC+ +      + +H H + +    D  +   +  F    GD+  
Sbjct: 101 SNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEG 160

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYL----------------------- 128
           A+Q+  +  E  I  WNS++     NG   E   ++                        
Sbjct: 161 ARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQ 220

Query: 129 ------------YLVTR---------TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTM 164
                       Y+++          T L+N   +CG + +  ++FDK+   +V +W  M
Sbjct: 221 TGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAM 280

Query: 165 ISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           IS Y + G  ++ + L +KM  + G  P+ VT V+++SA      +E G++++  + +S 
Sbjct: 281 ISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSY 340

Query: 224 MKISGSLLNY-LVDMYFKCGKIGEAQKLLGRYEI--DEVDVVLWTTLVSG 270
             I G   +  +VDM  + G + EA K + + +         LWT ++  
Sbjct: 341 RLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGA 390


>gi|302781642|ref|XP_002972595.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
 gi|300160062|gb|EFJ26681.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
          Length = 606

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 176/540 (32%), Positives = 276/540 (51%), Gaps = 42/540 (7%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            +CG ++    +F   P+ +V SW  +IS      + R  LG    M   G  PD   + 
Sbjct: 77  GQCGDVESAHAVFACQPDPNVFSWMMLISACLRNALPRAALGHYRAMQLRGCHPDAHVVS 136

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++  A     +LE+G+++   L  + M     + N L++MY +CG + + ++    + + 
Sbjct: 137 AIFCAVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMDDFERAF--WAMP 194

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKSCAS 316
             D V WTT+++G ++      A  L   M +    I+  L  + +++        +C +
Sbjct: 195 SRDEVSWTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVD--------ACGN 246

Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
           + A+  G  +H  I  + + ID                ++ A +LF +  E N   ++S+
Sbjct: 247 LSAIAQGRHLHDRIITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNITFSSM 306

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           + AYA  GH   A+ LF  ME+ G KPD VTF  +L ACSHGG VD+ + + +       
Sbjct: 307 VVAYARNGHFGDALKLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRG 366

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           I    +H+GC VDLL RAG L ++  F+  MPIPPD   W SLL+ACR H+NV++   A 
Sbjct: 367 IPLVAEHFGCAVDLLARAGWLADAEKFLNRMPIPPDSVSWMSLLQACRIHRNVEIGARAA 426

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           +H+    P   G + LL+NIY+ AG+ D  ++++  +RD G+KK  G S IE  G   +F
Sbjct: 427 EHVFRLAPHRAGPYSLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGKTSEF 486

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAF 585
             GD ++P   +I   +  +   +++ G    + Q                H E+LA+  
Sbjct: 487 IVGDSWHPDLVQICQEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKLAIGL 546

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GLI T  KTTI IV N+R+C DCH+  KV S+V  R+IVIRD   FH  + G+CSCRDYW
Sbjct: 547 GLIKTPPKTTISIVKNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGKCSCRDYW 606


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 169/443 (38%), Positives = 246/443 (55%), Gaps = 56/443 (12%)

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DA-----EF 309
           +DVV WTT+V G +K    D+AR LFD M ERNL+SW  M+SG +      DA     E 
Sbjct: 163 LDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEM 222

Query: 310 KYKS--------------CASIGALYHGIWVHVYIKKNQISIDN---------------I 340
           + +               C   GAL  G  VH +++++ I +D                +
Sbjct: 223 RARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCV 282

Query: 341 ELAYDLFS--EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           E A+ +F    ++ K +  W  +I  +A+ G  Q A+ LF  ME  G  PD VT + +L+
Sbjct: 283 EEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLT 342

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           AC+H G++ EG  + +   + Y I+PKM+HYGCMVDL GRAG LEE+   I  MP+ PDV
Sbjct: 343 ACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDV 402

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            +  +L  A + H +V L E     + E DP N G +VLLAN+ A AGR +D++R+R  +
Sbjct: 403 GVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLM 462

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------- 570
            +  + K+ G S+IE  G V +F  G + +P +EE+Y M +++   ++ +G         
Sbjct: 463 DERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTRDVL 522

Query: 571 -------QETS-LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                  +ET  L H E+LA+AFGL+ T    T+RI  NLR+C DCH   K  S+V+ R+
Sbjct: 523 HAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQ 582

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           IV+RD  RFH F+ GQCSC+DYW
Sbjct: 583 IVVRDRNRFHHFKDGQCSCKDYW 605


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 280/536 (52%), Gaps = 35/536 (6%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           +KC  L ++ +LFD++P RD +S+N +I+ Y         L L  +M   G     +   
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +++S    L D+ +GK +H  L    +     L N L+DMY KCG +  A+         
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS-- 399

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL------------ISWTLMISGMLNQ 305
           E   + WT L++GYV++ + +EA +LF +M    L             S +L + G+  Q
Sbjct: 400 EKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQ 459

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
              +  +S          + V +Y K        ++ A   F E+ E+N   W +VI+AY
Sbjct: 460 LHSYLIRSGYKSSVFSGSVLVDMYAK-----CGCLDEALRTFDEMPERNSISWNAVISAY 514

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
           A  G A+ AI +F  M   G  PD VTF+++L+ACSH GL DE   +       Y+I P 
Sbjct: 515 AHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPW 574

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
            +HY C++D LGR G   +    +  MP   D  IW+S+L +CR H N +LA  A   L 
Sbjct: 575 KEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF 634

Query: 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
             +P +   +V+L+NIYA+AG+ +D + ++  +RD G++K+ GYS +E    ++ F S D
Sbjct: 635 GMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASND 694

Query: 546 IFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ETSLQHRERLAVAFGLIS 589
           + +P  +EI   L+ +   + +QG +                E+   H ERLA+AF L++
Sbjct: 695 LTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMN 754

Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           T   T IRI+ NL  C DCH+ +K+ S++ NR+I++RD+ RFH F+ G CSC DYW
Sbjct: 755 TPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 164/364 (45%), Gaps = 30/364 (8%)

Query: 124 FAIYLYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           FAI   L T   + N       K G L    ++F ++ ++D +++N M+   +  G++ +
Sbjct: 160 FAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQ 219

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L L + M   G+     T  S+++    +  L +G  +H  +  ST  ++  + N L+D
Sbjct: 220 ALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLD 279

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNL 292
            Y KC  + + ++L    E+ E D V +  +++ Y  +       RLF EM     +R +
Sbjct: 280 FYSKCDCLDDMRRLFD--EMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQV 337

Query: 293 ISWTLMIS--GMLNQ-------DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA 343
           + +  M+S  G L          A+      AS   L + + + +Y K        ++ A
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNAL-IDMYSKCGM-----LDAA 391

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
              FS  SEK+   WT++I  Y   G  ++A+ LF +M   G +PD+ TF +++ A S  
Sbjct: 392 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 451

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
            ++  G    S   R    K  +     +VD+  + G L+E+      MP    +S W++
Sbjct: 452 AMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNA 509

Query: 464 LLRA 467
           ++ A
Sbjct: 510 VISA 513



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 133/321 (41%), Gaps = 36/321 (11%)

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQ 148
           L YA  +   G  P++ I   I    ++ G   E     L       + +KCG L     
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASE----DLLGNALIDMYSKCGMLDAAKS 393

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
            F     +  ISW  +I+ Y   G + E L L S M   G+ PD  T  S+I A + L  
Sbjct: 394 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           + +G+ LH +L  S  K S    + LVDMY KCG + EA +     E+ E + + W  ++
Sbjct: 454 IGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFD--EMPERNSISWNAVI 511

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           S Y    E   A ++F+ M+       ++    +L         +C+  G L      + 
Sbjct: 512 SAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVL--------AACSHNG-LADECMKYF 562

Query: 329 YIKKNQISIDNIELAY----------DLFSEIS--------EKNVYLWTSVIAAYAMAGH 370
           ++ K+Q SI   +  Y            FS++         + +  +WTS++ +  + G+
Sbjct: 563 HLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGN 622

Query: 371 ---AQKAIDLFLEMEETGTKP 388
              A+ A D    ME T   P
Sbjct: 623 QELARVAADKLFGMEPTDATP 643



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 170/429 (39%), Gaps = 78/429 (18%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     LF   P+R+  +W  M+  + + G   + L L   M  EGV PD VT+ +++
Sbjct: 88  GDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVL 147

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           +    L    +  +LH F  +  +     + N L+D Y K G +  A+++    E+ + D
Sbjct: 148 N----LPGCTV-PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVF--LEMHDKD 200

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
            V +  ++ G  K     +A +LF  M    + +     S +L           A +  L
Sbjct: 201 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT--------VAAGMAHL 252

Query: 321 YHGIWVHVYIKKN----QISIDNIELAY-----------DLFSEISEKNVYLWTSVIAAY 365
             G  VH  + ++     + ++N  L +            LF E+ E++   +  +IAAY
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 366 AMAGHAQKAIDLFLEMEE----------------TGTKPD---------QVTFI------ 394
           A    A   + LF EM++                 G+ PD         Q+  +      
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 372

Query: 395 ----ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
               AL+   S  G++D      S +S    I      +  ++    + G  EE+    +
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAIS-----WTALITGYVQNGQHEEALQLFS 427

Query: 451 SM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET---DPLNDGAHVLLANIYAK 504
            M    + PD + +SS+++A      + L      +L  +     +  G+  +L ++YAK
Sbjct: 428 DMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGS--VLVDMYAK 485

Query: 505 AGRLDDMSR 513
            G LD+  R
Sbjct: 486 CGCLDEALR 494



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 32/127 (25%)

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
           + S     AR +FD+M  +N+ S  L++S          Y S   + A  H         
Sbjct: 54  LSSGHLHRARAMFDQMPHKNIFSLNLILSA---------YSSSGDLPAAQH--------- 95

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                         LF     +N   WT ++ A+A AG    A+ LF  M   G  PD+V
Sbjct: 96  --------------LFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRV 141

Query: 392 TFIALLS 398
           T   +L+
Sbjct: 142 TVTTVLN 148


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/541 (33%), Positives = 294/541 (54%), Gaps = 47/541 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L     +F  +  + V SWN +I  +   G   + L    +M   G+ PD+ ++VS
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+ A  +L  L+ GK +H F+  + ++++  +   L+ +YF C K        GR   + 
Sbjct: 523 LLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSK-----PFYGRTYFET 577

Query: 259 V---DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   + V W  ++SGY ++   +EA  LF +M+   L    + I+ +L         +C+
Sbjct: 578 MGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILG--------ACS 629

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
            + AL  G  VH +  KN +  DN               +  +  +F+ ++ K V  W  
Sbjct: 630 QLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNV 689

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I  + + G   KA++LF +M+ +  +PD+ TF+ +L AC H GLV EG ++L++   +Y
Sbjct: 690 MITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLY 749

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            ++P+++HY C++D+LGRAG L E+ NFI  MP  PD  IWSSLL +   + ++++ E  
Sbjct: 750 KLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKF 809

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L   +     +++LL+N+YA AG+ D +  +R K++D+ L+K +G S IE  G V+ 
Sbjct: 810 AEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYS 869

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQG-----------LQETSLQ-----HRERLAVA 584
           F +G+  NP S+EI  M N +E  + + G           L+E   +     H E++A+ 
Sbjct: 870 FIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAIC 929

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FG ++T E TT+RI  NLRIC DCH+  K  S+   REIVIRDN RFH F+ G CSC DY
Sbjct: 930 FGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDY 989

Query: 645 W 645
           W
Sbjct: 990 W 990



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 35/297 (11%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPD 192
            L  KCG L E  +LFDK+P +++ISWN++I  ++  G + E       +    +G+ PD
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
             TMV+L+   +   ++++G  +H    +  +     + N L+DMY KCG + EA  L  
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 253 RYEIDEVDVVLWTTLVSGYVKSN----ERDEARRLF--DEMVERNLISWTLMISGMLNQD 306
           +  I+   VV W +++  Y +        D  R+++  +E++E N ++   ++   L + 
Sbjct: 373 K--IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEES 430

Query: 307 A--------------EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352
                           F+YK       L +  ++  Y K       ++  A  +F  ++ 
Sbjct: 431 ELLSLRALHGYSLRHSFQYKE------LINNAFIAAYAK-----CGSLVFAEHVFFGMNT 479

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           K+V  W +VI  +A  G   KA+D + EM   G  PD  + ++LL AC   GL+  G
Sbjct: 480 KSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 169/379 (44%), Gaps = 39/379 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG--VSPDE 193
           + +KCG L E   LF K+ N+ V+SWN+MI  Y+  G   E   LL KM  E   +  +E
Sbjct: 357 MYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNE 416

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           VT+++L+ A  +  +L   + LH +    + +    + N  +  Y KCG +  A+ +   
Sbjct: 417 VTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVF-- 474

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
           + ++   V  W  ++ G+ ++ +  +A   + EM    ++     I  +L         +
Sbjct: 475 FGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL--------LA 526

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNVYL 357
           C  +G L +G  +H ++ +N + +++  +A  L                F  + +KN   
Sbjct: 527 CGRLGLLQYGKEIHGFVLRNGLEMNSF-VAVSLLSLYFHCSKPFYGRTYFETMGDKNSVC 585

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH---GGLVDEGYDFLS 414
           W ++++ Y+      +A+ LF +M   G +PD++   ++L ACS     GL  E + F  
Sbjct: 586 WNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFAL 645

Query: 415 KKSRVYNIKPKMQHYGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
           K S + +         C ++D+  ++G L  S      +    +V+ W+ ++     H  
Sbjct: 646 KNSLMED-----NFVACSLMDMYAKSGFLGHSQRIFNRLN-GKEVASWNVMITGFGVHGQ 699

Query: 474 VKLAEHAFKHLTETDPLND 492
              A   F+ +  +D   D
Sbjct: 700 GNKAVELFEDMKRSDKQPD 718



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 14/273 (5%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL-GLLSKMGAEGVSPDEVTMVS 198
           CG   E   +FD+L N+++  WN ++S Y    +Y E +   L  +      PD  T   
Sbjct: 156 CGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPC 215

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           LI A T   D+ +GK++H    +  + +   + N ++ +Y KCG + EA +L  +  + E
Sbjct: 216 LIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDK--MPE 273

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER---------NLISWTLMISGMLNQDAEF 309
            +++ W +L+ G+ ++    EA R F  ++E           +++   + SG  N D   
Sbjct: 274 QNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM 333

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
                A    L H + V   +         +  A  LF +I  K+V  W S+I AY+  G
Sbjct: 334 VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393

Query: 370 HAQKAIDLF--LEMEETGTKPDQVTFIALLSAC 400
              +  DL   + MEE   + ++VT + LL AC
Sbjct: 394 FVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 15/149 (10%)

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGG 404
           +F  +  KN++ W ++++ Y       +AI  FLE+   T  +PD  TF  L+ AC+   
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHY------GCMVDLLGRAGHLEESANFITSMPIPPDV 458
            +  G         V+ +  KM           M+ L G+ G L+E+      MP    +
Sbjct: 225 DIHLG-------KSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLI 277

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           S W+SL+R    +     A  AF+ L E+
Sbjct: 278 S-WNSLIRGFSENGFWLEAYRAFRSLLES 305


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 209/676 (30%), Positives = 317/676 (46%), Gaps = 119/676 (17%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR-TVLLN------- 138
           G +  A+++  +  +  I  WNS++     N  P+E   ++  +  R TV  N       
Sbjct: 30  GQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYV 89

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K   + E  + FD +P R+V+SW  M+  Y   G+  E   L  +M  + V    V +  
Sbjct: 90  KNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGG 149

Query: 199 LISAR-----------TKLRDLEMGKNL--------------HLFLEES-------TMKI 226
           LI  R             ++D+    N+               LF E         T  I
Sbjct: 150 LIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMI 209

Query: 227 SGSLLNYLVDM----------------------YFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           SG + N  VD+                      Y + G+I EA +L     +  V  V  
Sbjct: 210 SGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAV--VAC 267

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI----------------SGMLNQDAE 308
             ++ G+ ++ E  +AR++FD++ E++  +W+ MI                + M  +  +
Sbjct: 268 NAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQ 327

Query: 309 FKYKS-------CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
             + S       CAS+ +L HG  VH  + K+Q   D               ++  A  +
Sbjct: 328 SNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQI 387

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F   S K++ +W S+I  YA  G  ++A+ +F EM  +G   D VTF+ +LSACS+ G V
Sbjct: 388 FDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKV 447

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
            EG +        Y ++PK +HY CMVDLLGRAG + ++ + I  MP+  D  IW +LL 
Sbjct: 448 KEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLG 507

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           ACR H N+ LAE A K L + +P N G ++LL+NIYA  GR  D++ +R  +R   + K 
Sbjct: 508 ACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKS 567

Query: 527 LGYSLIEQGGFVHKFTSG-DIFNPHSEEIYLMLNEIEMTLQQQGLQETSL---------- 575
            G S IE    VH FT G    +P    I  ML +++  L++ G    S           
Sbjct: 568 PGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEE 627

Query: 576 ------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
                  H ERLAVAFGL+   E   IR++ NLR+CGDCHS +K+ +++  REI++RD  
Sbjct: 628 KVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDAN 687

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSCRDYW
Sbjct: 688 RFHHFKDGFCSCRDYW 703



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 169/415 (40%), Gaps = 71/415 (17%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G+++   ++FD++P++ ++SWN+M++ Y      RE   L  KM       + V+   
Sbjct: 28  RIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER----NTVSWNG 83

Query: 199 LISARTKLRDL-EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY--- 254
           LIS   K R + E  K      E + +  +      +V  Y + G + EA+ L  +    
Sbjct: 84  LISGYVKNRMVSEARKAFDTMPERNVVSWTA-----MVRGYVQEGLVSEAETLFWQMPEK 138

Query: 255 ----------------EIDEV----------DVVLWTTLVSGYVKSNERDEARRLFDEMV 288
                            IDE           DVV  T ++SGY +     EAR LFDEM 
Sbjct: 139 NVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMP 198

Query: 289 ERNLISWTLMISG---------------MLNQDAEFKYKS----------CASIGALYHG 323
            RN+ISWT MISG               ++ +  E  + +                L+  
Sbjct: 199 RRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDA 258

Query: 324 IWVHVYIKKNQISI-----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           + V   +  N + +       +  A  +F +I EK+   W+++I  Y   G   +A++LF
Sbjct: 259 MPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLF 318

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
             M+  G + +  + I++LS C+    +D G    ++  +       +     ++ +  +
Sbjct: 319 ALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVK-SQFDSDVFVASVLITMYVK 377

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
            G L ++         P D+ +W+S++     H  V+ A   F  +  +    DG
Sbjct: 378 CGDLVKARQIFDRFS-PKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDG 431



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 122/286 (42%), Gaps = 53/286 (18%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N  +  Y + G+I  A+++    E+ +  +V W ++V+GY ++N   EAR LFD+M ERN
Sbjct: 20  NSQIARYARIGQIESARRVFD--EMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERN 77

Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS 351
            +SW  +ISG                           Y+K   +S      A   F  + 
Sbjct: 78  TVSWNGLISG---------------------------YVKNRMVS-----EARKAFDTMP 105

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-- 409
           E+NV  WT+++  Y   G   +A  LF +M E       V++  +L        +DE   
Sbjct: 106 ERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV----VSWTVMLGGLIQVRRIDEARG 161

Query: 410 -YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
            +D +  K  V            M+    + G L E+      MP    +S W++++   
Sbjct: 162 LFDIMPVKDVVARTN--------MISGYCQEGRLAEARELFDEMPRRNVIS-WTTMISGY 212

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
             +  V +A   F+ + E + ++  A ++    Y + GR+++ S +
Sbjct: 213 VQNGQVDVARKLFEVMPEKNEVSWTAMLMG---YTQGGRIEEASEL 255



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 107/238 (44%), Gaps = 21/238 (8%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P  + V+ V  S +S+D   ++H+ L+ +    D  +++ +    V  GDL  A+QI  +
Sbjct: 331 PSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDR 390

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKLKEV 146
               +I +WNSII     +G  +E   ++  +         VT   +L+ C   GK+KE 
Sbjct: 391 FSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEG 450

Query: 147 CQLFDKLPNRDVISWNT-----MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            ++F+ + ++ ++   T     M+      G+  + + L+ KM  E    D +   +L+ 
Sbjct: 451 LEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEA---DAIIWGALLG 507

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           A     ++ + +     L +   K +G  +  L ++Y   G+ G+  +L     + +V
Sbjct: 508 ACRTHMNMNLAEVAAKKLLQLEPKNAGPYI-LLSNIYASKGRWGDVAELRRNMRVKKV 564


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 307/601 (51%), Gaps = 53/601 (8%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR------TVLLNKC 140
            DL  A+++  +  E  +  W ++I   L  G  +    ++  +  R      +++   C
Sbjct: 71  ADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYC 130

Query: 141 --GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV--SPDEVTM 196
             G++++  +LF ++P R+VISW +MI      G   E LGL  +M   GV   P   T 
Sbjct: 131 CNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTY 190

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-GRYE 255
             +I+A      L  G  +H  + +        +   L+  Y  C ++ ++ ++  G+  
Sbjct: 191 CCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLH 250

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           ++   VV+WT LV+GY  + + ++A ++F EM+   ++      +  LN        SC 
Sbjct: 251 MN---VVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALN--------SCC 299

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            + AL  G  +H    K  +  D               N+     +F  IS+KN+  W S
Sbjct: 300 GLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNS 359

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           VI   A  G    A+  F +M  +  +PD++TF  LLSACSH G+  +G       S   
Sbjct: 360 VIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENK 419

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           + + K+ HY CMVD+LGR+G LEE+   I +MP+  +  +W  LL AC  H  +++AE A
Sbjct: 420 SAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERA 479

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K + + +P    A+VLL+N+YA A R  D+SRIR +++  G+ KQ G S I   G+ ++
Sbjct: 480 AKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNE 539

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---QETSLQ-------------HRERLAVA 584
           F SGD  +P S+ IY  L  +   L++ G    Q  +L              H ERLA+ 
Sbjct: 540 FLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIG 599

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLIST E +TI ++ NLR+CGDCHS +K+ +++  R+I++RD+ RFH F  G+CSC DY
Sbjct: 600 FGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDY 659

Query: 645 W 645
           W
Sbjct: 660 W 660



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 149/365 (40%), Gaps = 85/365 (23%)

Query: 148 QLFDKLPNRDVISWNTMI-SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
           QLF ++P +DV+SWN+MI  C+                                      
Sbjct: 47  QLFYEMPVKDVVSWNSMIKGCFDCA----------------------------------- 71

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            DL M + L   + E ++    +++N     + + GKI  A+ L   Y++   D+  W +
Sbjct: 72  -DLTMARKLFDEMPERSVVSWTTMIN----GFLQFGKIEVAEGLF--YKMPFRDIAAWNS 124

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQDAEFK 310
           ++ GY  +   ++  RLF EM  RN+ISWT MI G                M+    E K
Sbjct: 125 MIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVK 184

Query: 311 YKS---------CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
             S         CA+  ALY G+ +H ++ K   S D                +E +  +
Sbjct: 185 PTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRV 244

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F      NV +WT+++  Y +    + A+ +F EM   G  P+Q +F + L++C     +
Sbjct: 245 FHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEAL 304

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           D G +  +   ++  ++  +     ++ +  R G+L +       +     VS W+S++ 
Sbjct: 305 DWGREIHTAAVKL-GLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVS-WNSVIV 362

Query: 467 ACRCH 471
            C  H
Sbjct: 363 GCAQH 367



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 38/256 (14%)

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
           TM I+G   NY  D          A +L   YE+   DVV W +++ G     +   AR+
Sbjct: 30  TMMITGYARNYRFD---------HALQLF--YEMPVKDVVSWNSMIKGCFDCADLTMARK 78

Query: 283 LFDEMVERNLISWTLMISGMLN----QDAE-----FKYKSCASIGALYHGIWVHVYIKKN 333
           LFDEM ER+++SWT MI+G L     + AE       ++  A+  ++ +G   +      
Sbjct: 79  LFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCN------ 132

Query: 334 QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG--TKPDQV 391
                 +E    LF E+  +NV  WTS+I      G +++A+ LF +M   G   KP   
Sbjct: 133 ----GRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSS 188

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY--GCMVDLLGRAGHLEESANFI 449
           T+  +++AC++   + +G       + V+ +      Y    ++        +E+S    
Sbjct: 189 TYCCVITACANASALYQGVQI---HAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVF 245

Query: 450 TSMPIPPDVSIWSSLL 465
               +  +V IW++L+
Sbjct: 246 HG-KLHMNVVIWTALV 260



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 115/283 (40%), Gaps = 59/283 (20%)

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
           +I EA+ +  +      DV L+T +++GY ++   D A +LF EM  ++++SW  MI G 
Sbjct: 10  RIDEARTVFDKVSFP--DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGC 67

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVI 362
            +         CA                       ++ +A  LF E+ E++V  WT++I
Sbjct: 68  FD---------CA-----------------------DLTMARKLFDEMPERSVVSWTTMI 95

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             +   G  + A  LF +M       D   + +++      G V++G        R++  
Sbjct: 96  NGFLQFGKIEVAEGLFYKMPFR----DIAAWNSMIYGYCCNGRVEDGL-------RLFQE 144

Query: 423 KP--KMQHYGCMVDLLGRAGHLEESANFITSM-----PIPPDVSIWSSLLRAC----RCH 471
            P   +  +  M+  L + G  EE+      M      + P  S +  ++ AC      +
Sbjct: 145 MPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALY 204

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
           Q V++  H FK     D     A   L   YA   +++D  R+
Sbjct: 205 QGVQIHAHVFKLGYSFDAYISAA---LITFYANCKQMEDSLRV 244


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 297/545 (54%), Gaps = 51/545 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMG---MYREGLGLLSKMGAEGVS---PDEV 194
           G L     L +  P+ +   +NT+I  Y+       + + L L   M     +   PD  
Sbjct: 33  GDLNYARLLLNTNPSLNSYYYNTIIRAYSHTSNPTHHFQALSLFIFMLQPHTNVPKPDTF 92

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T    + +  +L+  +  K LH F+ +        + N L+ MY + G++  A+++  R 
Sbjct: 93  TYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQVFDR- 151

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKS 313
            +   DVV WT++++G+V  +   EA +LF  M+E  + ++   +IS +         + 
Sbjct: 152 -MSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVL---------RG 201

Query: 314 CASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLW 358
           CA  GAL  G  VH  +K+  I                   +E A ++F ++ +++V++W
Sbjct: 202 CADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVW 261

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T++I   A  G  ++AI+LFLEME    KPD+ T + +LSA  + GLV EGY F +   +
Sbjct: 262 TAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQK 321

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            Y++KP ++H+GCMVDLL + G LEE+ +FI +MP+ PD  IW +L+ AC+ H + + AE
Sbjct: 322 RYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERAE 381

Query: 479 HAFKH--LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
              KH  L      + G+++L +N+YA  G+  D + +R  +   GL K  G S IE  G
Sbjct: 382 RLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIEVDG 441

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------QETSLQ---HRER 580
            VH+F  GD  +P +E+I++ L+++   L+++G              +E ++Q   H E+
Sbjct: 442 VVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAIQLLHHSEK 501

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
           LA+A+GLI T   + IRIV NLR C DCH FMK+ S+VY R+I++RD  RFH F+ G CS
Sbjct: 502 LALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKVYQRDIIVRDRIRFHHFKNGDCS 561

Query: 641 CRDYW 645
           C+DYW
Sbjct: 562 CKDYW 566



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 8/156 (5%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG L+   ++FD + +RDV  W  MI      GM +E + L  +M    V PDE T
Sbjct: 236 MYSKCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERT 295

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEES----TMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           ++ ++SA    R+  + +  ++F  +     +MK +      +VD+  K G + EA+  +
Sbjct: 296 IMVVLSA---YRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFI 352

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
               + + D V+W TL+       + + A RL   +
Sbjct: 353 NAMPM-KPDAVIWRTLIWACKVHADTERAERLMKHL 387


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 198/589 (33%), Positives = 287/589 (48%), Gaps = 73/589 (12%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           QII+  D P      S I N L+N Y                  +K  +      L    
Sbjct: 31  QIIKTLDNP----LPSFIYNHLVNMY------------------SKLDRPNSAQLLLSLT 68

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           PNR V++W  +I+     G +   L   S M  + + P++ T      A   LR   +GK
Sbjct: 69  PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128

Query: 214 NLHLFLEESTMKISGSLLN-YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
            +H  L     +IS   +     DMY K G   EA+K+    E+ E ++  W   +S  V
Sbjct: 129 QVHA-LAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFD--EMPERNIATWNAYLSNSV 185

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
                D+A   F E  +  +     M+S +L+        +CA +  L  G  VH    K
Sbjct: 186 LEGRYDDALTAFIEARKEGIEPTDFMVSSVLS--------ACAGLSVLEVGKSVHTLAVK 237

Query: 333 NQI------------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
             +                  SI++ E A+D   E+ E+N+  W ++I  YA  G A  A
Sbjct: 238 ACVVGNIFVGSALVDMYGKCGSIEDAERAFD---EMPERNLVTWNAMIGGYAHQGQADMA 294

Query: 375 IDLFLEMEETGTK--PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           + LF EM     +  P+ VTF+ +LSACS  G V+ G +        Y I+P  +HY C+
Sbjct: 295 VTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACV 354

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLLGRAG +E++  FI  MPI P VS+W +LL A +     +L + A  +L E DPL+ 
Sbjct: 355 VDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDS 414

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G HVLL+N++A AGR ++ + +R +++D+G+KK  G S I  G  VH F + D  +  + 
Sbjct: 415 GNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNS 474

Query: 553 EIYLMLNEIEMTLQQQG-LQETSLQ---------------HRERLAVAFGLISTSEKTTI 596
           EI  ML ++   ++  G + +TS                 H E++A+AFGLIS      I
Sbjct: 475 EIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPI 534

Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           RI  NLRICGDCHS +K  S +  REI++RDN  FHRF+  QCSCRDYW
Sbjct: 535 RITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 195/606 (32%), Positives = 303/606 (50%), Gaps = 103/606 (16%)

Query: 136 LLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
           L+     LK+V    ++FD++P R+VI  N MI  Y + G Y EG+ +   M    V PD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
             T   ++ A +    + +G+ +H    +  +  +  + N LV MY KCG + EA+ +L 
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEA-------------------------------- 280
             E+   DVV W +LV GY ++   D+A                                
Sbjct: 200 --EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE 257

Query: 281 -----RRLFDEMVERNLISWTLMI-----SGMLNQDAEFKYK------------------ 312
                + +F +M +++L+SW +MI     + M  +  E   +                  
Sbjct: 258 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLP 317

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNI----------------ELAYDLFSEISEKNVY 356
           +C    AL  G  +H YI++ ++ I N+                E A D+F  +  ++V 
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKL-IPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            WT++I+AY  +G    A+ LF +++++G  PD + F+  L+ACSH GL++EG       
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
           +  Y I P+++H  CMVDLLGRAG ++E+  FI  M + P+  +W +LL ACR H +  +
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
              A   L +  P   G +VLL+NIYAKAGR ++++ IR  ++  GLKK  G S +E   
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 556

Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRER 580
            +H F  GD  +P S+EIY  L+ +   +++ G                +ET L  H E+
Sbjct: 557 IIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEK 616

Query: 581 LAVAFGLISTSEK-----TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
           LA+ F L++T E+      TIRI  NLRICGDCH   K+ SQ+ +REI+IRD  RFH F+
Sbjct: 617 LAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676

Query: 636 GGQCSC 641
            G CSC
Sbjct: 677 FGVCSC 682



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
           V + +   S+ ++  A  +F EI E+NV +   +I +Y   G   + + +F  M     +
Sbjct: 78  VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVR 137

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           PD  TF  +L ACS  G +  G       ++V  +   +     +V + G+ G L E+  
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKV-GLSSTLFVGNGLVSMYGKCGFLSEARL 196

Query: 448 FITSMPIPPDVSIWSSL-------------LRACRCHQNVKLAEHA 480
            +  M    DV  W+SL             L  CR  ++VK++  A
Sbjct: 197 VLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDA 241


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 280/536 (52%), Gaps = 35/536 (6%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           +KC  L ++ +LFD++P RD +S+N +I+ Y         L L  +M   G     +   
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +++S    L D+ +GK +H  L    +     L N L+DMY KCG +  A+         
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS-- 399

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL------------ISWTLMISGMLNQ 305
           E   + WT L++GYV++ + +EA +LF +M    L             S +L + G+  Q
Sbjct: 400 EKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQ 459

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
              +  +S          + V +Y K        ++ A   F E+ E+N   W +VI+AY
Sbjct: 460 LHSYLIRSGYKSSVFSGSVLVDMYAK-----CGCLDEALRTFDEMPERNSISWNAVISAY 514

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
           A  G A+ AI +F  M   G  PD VTF+++L+ACSH GL DE   +       Y+I P 
Sbjct: 515 AHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPW 574

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
            +HY C++D LGR G   +    +  MP   D  IW+S+L +CR H N +LA  A   L 
Sbjct: 575 KEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF 634

Query: 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
             +P +   +V+L+NIYA+AG+ +D + ++  +RD G++K+ GYS +E    ++ F S D
Sbjct: 635 GMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASND 694

Query: 546 IFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ETSLQHRERLAVAFGLIS 589
           + +P  +EI   L+ +   + +QG +                E+   H ERLA+AF L++
Sbjct: 695 LTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMN 754

Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           T   T IRI+ NL  C DCH+ +K+ S++ NR+I++RD+ RFH F+ G CSC DYW
Sbjct: 755 TPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 164/364 (45%), Gaps = 30/364 (8%)

Query: 124 FAIYLYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
           FAI   L T   + N       K G L    ++F ++ ++D +++N M+   +  G++ +
Sbjct: 160 FAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQ 219

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L L + M   G+     T  S+++    +  L +G  +H  +  ST  ++  + N L+D
Sbjct: 220 ALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLD 279

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNL 292
            Y KC  + + ++L    E+ E D V +  +++ Y  +       RLF EM     +R +
Sbjct: 280 FYSKCDCLDDMRRLFD--EMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQV 337

Query: 293 ISWTLMIS--GMLNQ-------DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA 343
           + +  M+S  G L          A+      AS   L + + + +Y K        ++ A
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNAL-IDMYSKCGM-----LDAA 391

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
              FS  SEK+   WT++I  Y   G  ++A+ LF +M   G +PD+ TF +++ A S  
Sbjct: 392 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 451

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
            ++  G    S   R    K  +     +VD+  + G L+E+      MP    +S W++
Sbjct: 452 AMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSIS-WNA 509

Query: 464 LLRA 467
           ++ A
Sbjct: 510 VISA 513



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 133/321 (41%), Gaps = 36/321 (11%)

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQ 148
           L YA  +   G  P++ I   I    ++ G   E     L       + +KCG L     
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED----LLGNALIDMYSKCGMLDAAKS 393

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
            F     +  ISW  +I+ Y   G + E L L S M   G+ PD  T  S+I A + L  
Sbjct: 394 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           + +G+ LH +L  S  K S    + LVDMY KCG + EA +     E+ E + + W  ++
Sbjct: 454 IGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFD--EMPERNSISWNAVI 511

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           S Y    E   A ++F+ M+       ++    +L         +C+  G L      + 
Sbjct: 512 SAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVL--------AACSHNG-LADECMKYF 562

Query: 329 YIKKNQISIDNIELAY----------DLFSEIS--------EKNVYLWTSVIAAYAMAGH 370
           ++ K+Q SI   +  Y            FS++         + +  +WTS++ +  + G+
Sbjct: 563 HLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGN 622

Query: 371 ---AQKAIDLFLEMEETGTKP 388
              A+ A D    ME T   P
Sbjct: 623 QELARVAADKLFGMEPTDATP 643



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 170/429 (39%), Gaps = 78/429 (18%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G L     LF   P+R+  +W  M+  + + G   + L L   M  EGV PD VT+ +++
Sbjct: 88  GDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVL 147

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
           +    L    +  +LH F  +  +     + N L+D Y K G +  A+++    E+ + D
Sbjct: 148 N----LPGCTV-PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVF--LEMHDKD 200

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
            V +  ++ G  K     +A +LF  M    + +     S +L           A +  L
Sbjct: 201 AVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT--------VAAGMAHL 252

Query: 321 YHGIWVHVYIKKN----QISIDNIELAY-----------DLFSEISEKNVYLWTSVIAAY 365
             G  VH  + ++     + ++N  L +            LF E+ E++   +  +IAAY
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 366 AMAGHAQKAIDLFLEMEE----------------TGTKPD---------QVTFI------ 394
           A    A   + LF EM++                 G+ PD         Q+  +      
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 372

Query: 395 ----ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
               AL+   S  G++D      S +S    I      +  ++    + G  EE+    +
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAIS-----WTALITGYVQNGQHEEALQLFS 427

Query: 451 SM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET---DPLNDGAHVLLANIYAK 504
            M    + PD + +SS+++A      + L      +L  +     +  G+  +L ++YAK
Sbjct: 428 DMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGS--VLVDMYAK 485

Query: 505 AGRLDDMSR 513
            G LD+  R
Sbjct: 486 CGCLDEALR 494



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 32/127 (25%)

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
           + S     AR +FD+M  +N+ S  L++S          Y S   + A  H         
Sbjct: 54  LSSGHLHRARAMFDQMPHKNIFSLNLILSA---------YSSSGDLPAAQH--------- 95

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                         LF     +N   WT ++ A+A AG    A+ LF  M   G  PD+V
Sbjct: 96  --------------LFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRV 141

Query: 392 TFIALLS 398
           T   +L+
Sbjct: 142 TVTTVLN 148


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 179/531 (33%), Positives = 278/531 (52%), Gaps = 43/531 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +LFD++P R++ +WN  IS   + G  +E +    +    G  P+ +T    ++A +   
Sbjct: 164 KLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGL 223

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L++G  +H  +  S      S+ N L+D Y KC +I  ++ +    E+   + V W +L
Sbjct: 224 LLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFA--EMGMKNAVSWCSL 281

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           V+ YV+++E ++A  L+    +  + +   MIS +L+        +CA +  L  G  +H
Sbjct: 282 VAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLS--------ACAGMAGLELGRSIH 333

Query: 328 VYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            +  K  +  +                IE +   F E+ EKN+    S+I  YA  G   
Sbjct: 334 AHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVD 393

Query: 373 KAIDLFLEMEE--TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
            A+ LF +M     G  P+ +TF++LLSACS  G V+ G          Y I+P  +HY 
Sbjct: 394 MALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYS 453

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           C+VD+LGRAG +E++  FI  MPI P +S+W +L  ACR H    L   A ++L + DP 
Sbjct: 454 CIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPK 513

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
           + G HVLL+N +A AGR  + + +R +++ +G+KK  GYS I     VH F + D  +  
Sbjct: 514 DSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKM 573

Query: 551 SEEIYLMLNEIEMTLQQQGLQ---ETSL-------------QHRERLAVAFGLISTSEKT 594
           ++EI  ML ++   ++  G +   + SL              H E+LA+AFGL++     
Sbjct: 574 NKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSV 633

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            IRI  NLRICGDCHSF K  S    REI++RDN RFHRF+ G CSC+DYW
Sbjct: 634 PIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 133/338 (39%), Gaps = 72/338 (21%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P R+V+SW +++S     G +   L    +M  EGV+P++ T   +  A   LR    GK
Sbjct: 69  PARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGK 128

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +H                    +  KCG+I              +DV +  +    Y K
Sbjct: 129 QIHA-------------------LAVKCGRI--------------LDVFVGCSAFDMYCK 155

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQD---------AEFK-------------- 310
           +  RD+AR+LFDE+ ERNL +W   IS  +             EF+              
Sbjct: 156 TRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGF 215

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNV 355
             +C+    L  G+ +H  + ++    D                I  +  +F+E+  KN 
Sbjct: 216 LNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNA 275

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W S++AAY      +KA  L+L   +   +       ++LSAC+    ++ G    + 
Sbjct: 276 VSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAH 335

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
             +   ++  +     +VD+ G+ G +E+S      MP
Sbjct: 336 AVKAC-VERNIFVGSALVDMYGKCGCIEDSEQAFDEMP 372



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 25/252 (9%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-- 287
           L NYL++MY K     E+ +L+ R      +VV WT+LVSG  ++     A   F EM  
Sbjct: 44  LANYLINMYSKLDH-PESARLVLRL-TPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRR 101

Query: 288 ------------VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
                       V + + S  L ++G        K   C  I  ++ G        K ++
Sbjct: 102 EGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVK---CGRILDVFVGCSAFDMYCKTRL 158

Query: 336 SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
             D    A  LF EI E+N+  W + I+     G  ++AI+ F+E    G +P+ +TF  
Sbjct: 159 RDD----ARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCG 214

Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
            L+ACS G L+D G        R       +  Y  ++D  G+   +  S      M + 
Sbjct: 215 FLNACSDGLLLDLGMQMHGLVFR-SGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMK 273

Query: 456 PDVSIWSSLLRA 467
             VS W SL+ A
Sbjct: 274 NAVS-WCSLVAA 284


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 183/580 (31%), Positives = 301/580 (51%), Gaps = 53/580 (9%)

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISW 161
           PE  +    I   ++    Q V  I   L+T   + +KC  +++  ++F+ +P  DV+S 
Sbjct: 361 PEALMNGRTIHAMILQRSLQNVLLIGNSLLT---MYSKCNSMEDTERVFESMPCYDVVSC 417

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE-MGKNLHLFLE 220
           N +   Y ++      + + S M   G+ P+ +TM++L      L DL   G  LH ++ 
Sbjct: 418 NVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVT 477

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
           ++ +     + N L+ MY  CG +  +  +  R  I+   V+ W  +++  V+    +EA
Sbjct: 478 QTGLLSDEYITNSLITMYATCGDLESSTGIFSR--INNKSVISWNAIIAANVRHGRGEEA 535

Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC----ASIGALYHGIWVHVYIKKNQIS 336
            +LF +                 N+   F    C    A++ +L  G+ +H    KN + 
Sbjct: 536 IKLFMDSQHAG------------NKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLD 583

Query: 337 IDN--IELAYDLFSEISEKNVYL-------------WTSVIAAYAMAGHAQKAIDLFLEM 381
            D+  +    D++ +  + +  L             W ++I+ YA  G+ ++A D F  M
Sbjct: 584 CDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHM 643

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
              G KPD VTF+ALLSACSH GL+D+G D+ +  +  + + P ++H  C+VDLLGR G 
Sbjct: 644 VSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGK 703

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
             E+  FI  MP+ P+  IW SLL + R H+N+ +   A K+L E DP +D A+VLL+N+
Sbjct: 704 FAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNL 763

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
           YA   R  D+ ++R  ++ + L K+   S ++    V  F  GD  + H+E+IY+ L+EI
Sbjct: 764 YATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEI 823

Query: 562 EMTLQQQG-LQETS---------------LQHRERLAVAFGLISTSEKTTIRIVNNLRIC 605
            + L++ G + +TS                 H E+LA+A+GL+   E +TIRI  NLR+C
Sbjct: 824 LLKLREVGYVADTSSALHDTDEEQKEHNLWNHSEKLALAYGLLVVPEGSTIRIFKNLRVC 883

Query: 606 GDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            DCH   K+ S V++REIV+RD  RFH+F+ G CSC D+W
Sbjct: 884 ADCHLVFKLVSMVFHREIVLRDPYRFHQFKHGSCSCSDFW 923



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 176/396 (44%), Gaps = 48/396 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPDEVTMVS 198
           GKL E   LF  +  RDVISWNTMIS Y       E L  L ++    EG  P+ +T  S
Sbjct: 295 GKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEG-PPNSMTFSS 353

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A +    L  G+ +H  + + +++    + N L+ MY KC  + + +++     +  
Sbjct: 354 ALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVF--ESMPC 411

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSC 314
            DVV    L  GY    +   A R+F  M    ++ N I+       M+N        +C
Sbjct: 412 YDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYIT-------MINLQG-----TC 459

Query: 315 ASIGALY-HGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
            S+G L+ +G+ +H Y+ +  +  D               ++E +  +FS I+ K+V  W
Sbjct: 460 KSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISW 519

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF--LSKK 416
            ++IAA    G  ++AI LF++ +  G K D+      LS+ ++   ++EG     LS K
Sbjct: 520 NAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVK 579

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP--DVSIWSSLLRACRCHQNV 474
           +    +          +D+ G+ G ++     + ++P P       W++L+     +   
Sbjct: 580 N---GLDCDSHVVNATMDMYGKCGKMD---CMLKTLPDPAHRPTQCWNTLISGYARYGYF 633

Query: 475 KLAEHAFKHLTETDPLND-GAHVLLANIYAKAGRLD 509
           K AE  FKH+       D    V L +  + AG +D
Sbjct: 634 KEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLID 669



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 124/279 (44%), Gaps = 26/279 (9%)

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
           ++++  +LFD++  RD ISWN MIS Y+   +Y +   +LS M    V PD  T+ SL+S
Sbjct: 195 RVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVS 254

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
                  + +G  +H     S +  S  L+N LV+MY   GK+ EA+ L     +   DV
Sbjct: 255 VCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLF--RNMSRRDV 312

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ-DAEFKYKSCASIGAL 320
           + W T++S YV+SN   EA     ++++ +         G  N         +C+S  AL
Sbjct: 313 ISWNTMISSYVQSNSCVEALETLGQLLQTD--------EGPPNSMTFSSALGACSSPEAL 364

Query: 321 YHGIWVHVYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
            +G  +H  I +  +                 +++E    +F  +   +V     +   Y
Sbjct: 365 MNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGY 424

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
           A       A+ +F  M  TG KP+ +T I L   C   G
Sbjct: 425 AALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLG 463



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 114/284 (40%), Gaps = 29/284 (10%)

Query: 25  VPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHL-----ITTNL-------MRD 72
           +  M + R   NV  +   ++ +   C+S+++ ER+   +     ++ N+       + D
Sbjct: 370 IHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALED 429

Query: 73  PQISTQVFEFLVFTG-DLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131
              + +VF ++  TG    Y   I  QG    +   +S        G P   +     L+
Sbjct: 430 VANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSY-------GMPLHAYVTQTGLL 482

Query: 132 TRTVLLNK-------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
           +   + N        CG L+    +F ++ N+ VISWN +I+     G   E + L    
Sbjct: 483 SDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDS 542

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
              G   D   +   +S+   L  LE G  LH    ++ +     ++N  +DMY KCGK+
Sbjct: 543 QHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKM 602

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
               K L   +        W TL+SGY +     EA   F  MV
Sbjct: 603 DCMLKTLP--DPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMV 644



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 121/263 (46%), Gaps = 12/263 (4%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +LF ++P R+V+SW  ++   +S G   E L    +M  EGV  +   + +++S    L 
Sbjct: 100 RLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALE 159

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D   G  +   +  S +    S+ N L+ M+    ++ +A++L  R E  E D + W  +
Sbjct: 160 DEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRME--ERDRISWNAM 217

Query: 268 VSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQD----AEFKYKSCASIGA 319
           +S Y       +   +  +M    V+ ++ +   ++S   + D        +  C S G 
Sbjct: 218 ISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSG- 276

Query: 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           L+  + +   +     +   ++ A  LF  +S ++V  W ++I++Y  +    +A++   
Sbjct: 277 LHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLG 336

Query: 380 EMEETGT-KPDQVTFIALLSACS 401
           ++ +T    P+ +TF + L ACS
Sbjct: 337 QLLQTDEGPPNSMTFSSALGACS 359



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 141/330 (42%), Gaps = 24/330 (7%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA---RTKLRDL 209
           +P+R   SW T +S     G+      LL  M    V      + SL++A   R      
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
             G  +H     + +  +  +   L+ +Y   G +  AQ+L   +E+ + +VV WT ++ 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLF--WEMPQRNVVSWTAIMV 118

Query: 270 GYVKSNERDEA----RRLFDE--MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
               +   +EA    RR+  E  M   N ++  + + G L +D     +  A +  +  G
Sbjct: 119 ALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGAL-EDEVAGLQVTAHV--VVSG 175

Query: 324 IWVHVYIKKNQIS----IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           +  HV +  + I+    +  ++ A  LF  + E++   W ++I+ Y+      K   +  
Sbjct: 176 LLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLS 235

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLV--DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           +M     KPD  T  +L+S C+   LV    G   L   S ++   P +     +V++  
Sbjct: 236 DMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLIN---ALVNMYS 292

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRA 467
            AG L+E+ +   +M    DV  W++++ +
Sbjct: 293 TAGKLDEAESLFRNMS-RRDVISWNTMISS 321


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 307/601 (51%), Gaps = 53/601 (8%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR------TVLLNKC 140
            DL  A+++  +  E  +  W ++I   L  G  +    ++  +  R      +++   C
Sbjct: 87  ADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYC 146

Query: 141 --GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV--SPDEVTM 196
             G++++  +LF ++P R+VISW +MI      G   E LGL  +M   GV   P   T 
Sbjct: 147 CNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTY 206

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-GRYE 255
             +I+A      L  G  +H  + +        +   L+  Y  C ++ ++ ++  G+  
Sbjct: 207 CCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLH 266

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           ++   VV+WT LV+GY  + + ++A ++F EM+   ++      +  LN        SC 
Sbjct: 267 MN---VVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALN--------SCC 315

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            + AL  G  +H    K  +  D               N+     +F  IS+KN+  W S
Sbjct: 316 GLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNS 375

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           VI   A  G    A+  F +M  +  +PD++TF  LLSACSH G+  +G       S   
Sbjct: 376 VIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENK 435

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           + + K+ HY CMVD+LGR+G LEE+   I +MP+  +  +W  LL AC  H  +++AE A
Sbjct: 436 SAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERA 495

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            K + + +P    A+VLL+N+YA A R  D+SRIR +++  G+ KQ G S I   G+ ++
Sbjct: 496 AKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNE 555

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---QETSLQ-------------HRERLAVA 584
           F SGD  +P S+ IY  L  +   L++ G    Q  +L              H ERLA+ 
Sbjct: 556 FLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIG 615

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLIST E +TI ++ NLR+CGDCHS +K+ +++  R+I++RD+ RFH F  G+CSC DY
Sbjct: 616 FGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDY 675

Query: 645 W 645
           W
Sbjct: 676 W 676



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 149/365 (40%), Gaps = 85/365 (23%)

Query: 148 QLFDKLPNRDVISWNTMI-SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
           QLF ++P +DV+SWN+MI  C+                                      
Sbjct: 63  QLFYEMPVKDVVSWNSMIKGCFDCA----------------------------------- 87

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            DL M + L   + E ++    +++N     + + GKI  A+ L   Y++   D+  W +
Sbjct: 88  -DLTMARKLFDEMPERSVVSWTTMIN----GFLQFGKIEVAEGLF--YKMPFRDIAAWNS 140

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQDAEFK 310
           ++ GY  +   ++  RLF EM  RN+ISWT MI G                M+    E K
Sbjct: 141 MIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVK 200

Query: 311 YKS---------CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
             S         CA+  ALY G+ +H ++ K   S D                +E +  +
Sbjct: 201 PTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRV 260

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F      NV +WT+++  Y +    + A+ +F EM   G  P+Q +F + L++C     +
Sbjct: 261 FHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEAL 320

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
           D G +  +   ++  ++  +     ++ +  R G+L +       +     VS W+S++ 
Sbjct: 321 DWGREIHTAAVKL-GLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVS-WNSVIV 378

Query: 467 ACRCH 471
            C  H
Sbjct: 379 GCAQH 383



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 38/256 (14%)

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
           TM I+G   NY  D          A +L   YE+   DVV W +++ G     +   AR+
Sbjct: 46  TMMITGYARNYRFD---------HALQLF--YEMPVKDVVSWNSMIKGCFDCADLTMARK 94

Query: 283 LFDEMVERNLISWTLMISGMLN----QDAE-----FKYKSCASIGALYHGIWVHVYIKKN 333
           LFDEM ER+++SWT MI+G L     + AE       ++  A+  ++ +G   +      
Sbjct: 95  LFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCN------ 148

Query: 334 QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG--TKPDQV 391
                 +E    LF E+  +NV  WTS+I      G +++A+ LF +M   G   KP   
Sbjct: 149 ----GRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSS 204

Query: 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY--GCMVDLLGRAGHLEESANFI 449
           T+  +++AC++   + +G       + V+ +      Y    ++        +E+S    
Sbjct: 205 TYCCVITACANASALYQGVQI---HAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVF 261

Query: 450 TSMPIPPDVSIWSSLL 465
               +  +V IW++L+
Sbjct: 262 HG-KLHMNVVIWTALV 276



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 59/283 (20%)

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
           +I EA+ +  +  +   DV L+T +++GY ++   D A +LF EM  ++++SW  MI G 
Sbjct: 26  RIDEARTVFDK--VSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGC 83

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVI 362
            +         CA                       ++ +A  LF E+ E++V  WT++I
Sbjct: 84  FD---------CA-----------------------DLTMARKLFDEMPERSVVSWTTMI 111

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             +   G  + A  LF +M       D   + +++      G V++G        R++  
Sbjct: 112 NGFLQFGKIEVAEGLFYKMPFR----DIAAWNSMIYGYCCNGRVEDGL-------RLFQE 160

Query: 423 KP--KMQHYGCMVDLLGRAGHLEESANFITSM-----PIPPDVSIWSSLLRAC----RCH 471
            P   +  +  M+  L + G  EE+      M      + P  S +  ++ AC      +
Sbjct: 161 MPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALY 220

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
           Q V++  H FK     D     A   L   YA   +++D  R+
Sbjct: 221 QGVQIHAHVFKLGYSFDAYISAA---LITFYANCKQMEDSLRV 260


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 182/571 (31%), Positives = 286/571 (50%), Gaps = 60/571 (10%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG--V 189
            + V L+    L    Q+ D+     + + N+MI  +    +  +      ++ + G  +
Sbjct: 45  VKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDL 104

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            PD  T+  L+ A T LR  E G  +H             +   L+ +Y + G +    K
Sbjct: 105 KPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHK 164

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           +     I   D V  T +V+   +  +   AR+LF+ M ER+ I+W  MISG   Q  E 
Sbjct: 165 VFN--SIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYA-QVGES 221

Query: 310 K------------------------YKSCASIGALYHGIWVHVYIKKNQISI-------- 337
           +                          +C  +GAL  G W H YI++N+I I        
Sbjct: 222 REALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTL 281

Query: 338 -------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
                   ++E A ++F  + EKNVY W+S +   AM G  +K ++LF  M++ G  P+ 
Sbjct: 282 VDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNA 341

Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
           VTF+++L  CS  G VDEG          + I+P+++HYGC+VDL  RAG LE++ + I 
Sbjct: 342 VTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQ 401

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            MP+ P  ++WSSLL A R ++N++L   A K + E +  N GA+VLL+NIYA +   D+
Sbjct: 402 QMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDN 461

Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL 570
           +S +R  ++  G++KQ G S++E  G VH+F  GD  +P   +I  +  +I   L+  G 
Sbjct: 462 VSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGY 521

Query: 571 QETSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
           +  +                  H E+ A+AFG++S  E   IRIV NLR+CGDCH    +
Sbjct: 522 KADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMM 581

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S+++NREI++RD  RFH F+ G CSC  +W
Sbjct: 582 ISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 172/541 (31%), Positives = 283/541 (52%), Gaps = 41/541 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCG L E  ++FD + +++V SW  +++ +   G   E + L  +M  EG  PD V 
Sbjct: 85  MYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVA 144

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           ++  I +    + L  G+ +H       M       N +++MY KCG IGEA  +  R  
Sbjct: 145 LLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTR-- 202

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + E +V+ W+T+++ + ++   DEA   F  M +  +    +    +L+        +  
Sbjct: 203 MPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLD--------AYT 254

Query: 316 SIGALYHGIWVHVYIK----KNQISIDNI-----------ELAYDLFSEISEKNVYLWTS 360
           S+GAL  G  +HV I        I + N            + A D+F  + EKNV  W +
Sbjct: 255 SVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNA 314

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++AAY   G +++A+ LF  M+  G +P+ +TF+ +L  CSH G   +      +  + +
Sbjct: 315 MLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDF 374

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I P+  H+GC++D+LGR+G LEE+   I +MP+P D  +W+SLL AC  H++   A  A
Sbjct: 375 GITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARA 434

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            +   + +P    A+++L+N+YA   + D+ +++R ++   G++KQ G S IE    VH+
Sbjct: 435 AEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHE 494

Query: 541 FTSGDIFNPHSEEIYLMLNEI--EM--------------TLQQQGLQETSLQHRERLAVA 584
           F +GD  +P    I+  L  +  EM              +++++   E    H E+LAVA
Sbjct: 495 FVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVA 554

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FG+ ST  +T + IV NLR+C DCHS +K  S V  R I +RD+ RFH F  G+CSC DY
Sbjct: 555 FGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDY 614

Query: 645 W 645
           W
Sbjct: 615 W 615



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 155/328 (47%), Gaps = 32/328 (9%)

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           R +  W + +     +   RE + LL + GA G + D   +  LI      + LE G+ +
Sbjct: 7   RAITKWLSPVLECGGVDAIREAVDLLEQSGAAGGTGD---LEQLIRRCAGAKALEEGRRI 63

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
           H +++  T+     L N LVDMY KCG + EA+++     +   +V  WT L++G+V+S 
Sbjct: 64  HRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFD--AMQHKNVFSWTMLMAGFVQSG 121

Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY-KSCASIGALYHGIWVHVYIKKNQ 334
              EA +LF  M +   +          ++ A  K+  SC +  AL  G  +H       
Sbjct: 122 RGVEAIQLFHRMCQEGELP---------DRVALLKFIDSCGAAKALSQGREIHSAAASCG 172

Query: 335 ISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           +  D               +I  A+ +F+ + EKNV  W+++IAA+     A +A+  F 
Sbjct: 173 MDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFK 232

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
            M++ G + D++T++++L A +  G ++ G   L  +     +   +     +V++ G+ 
Sbjct: 233 LMQQEGMELDRITYVSVLDAYTSVGALELG-KALHVRIVYAGLDTSIVVGNTLVNMYGKC 291

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRA 467
           G  +++ +   SM +  +V  W+++L A
Sbjct: 292 GSPDDARDVFDSM-VEKNVVSWNAMLAA 318


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 308/636 (48%), Gaps = 87/636 (13%)

Query: 50  SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF-TGDLGYAQQIIRQGDEPEIKIWN 108
           SC  ++   +IH+ +I +       I+  +  + +F   DL  A+ +      P   +WN
Sbjct: 61  SCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDL--ARSVFDSTPNPSRILWN 118

Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVL-------------LNKCGKLKEVCQLFDKLPN 155
           S+I     +    E   +Y  +V +  L              +K G LK   ++FDK+P 
Sbjct: 119 SMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPK 178

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RDV++WN MI+  +      E   +  ++  + V  D+V+  ++++              
Sbjct: 179 RDVVAWNAMIAGLSQ----SEDPYVARRVFDQMVDQDDVSWGTMMAG------------- 221

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
                                 Y   G   E  +L  + ++  V    W  +++ Y+++ 
Sbjct: 222 ----------------------YAHNGCFVEVLELFDKMKLGNVT---WNVIIAAYMQNG 256

Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
              EA   F +M   N    ++    +L   A   Y +    G  +H   + +    N +
Sbjct: 257 HAKEAISSFHQMRLENFHPNSVTFVSVLPAAA---YLAAFREGMAFHACIIQMGFLSNTL 313

Query: 336 SIDNI--------ELAYD--LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
             +++        +L Y   LF+E+  K+   W ++++ YA+ GH  +AI LF  M+E+ 
Sbjct: 314 VGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQ 373

Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
            + D V+F+++LSAC H GLV+EG       S  Y+IKP ++HY CMVDLLGRAG  +E+
Sbjct: 374 VQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDET 433

Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
             FI  MP+ PD  +W +LL +CR H NVKL E A  HL + +P N    V+L++IYA++
Sbjct: 434 LGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQS 493

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
           GR  D  + R K+ D+GLKK  G S +E    VH F  GD  +P  E ++L+ N +   +
Sbjct: 494 GRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKM 553

Query: 566 QQQG--------LQETS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
           ++ G        LQ             H ERLA+ F L++T   +TI+IV NLR+C DCH
Sbjct: 554 EKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCH 613

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +  K  S++  R I++RD  RFH F+ G CSC DYW
Sbjct: 614 TTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 176/526 (33%), Positives = 278/526 (52%), Gaps = 47/526 (8%)

Query: 157 DVISWNTMISCYTSMGMYR---EGLGLLSKMGAEGVSPDEVTMVSLISARTKLR-DLEMG 212
           D    NT+I  + +  ++            M    V P++ T   L+ A   L    ++G
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMY--FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
              H    +        + N L+ MY  F  G +G+A+ +  R  + +   V W+ ++ G
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDR--MPKESAVTWSAMIGG 204

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
           YV+     +A  LF EM    + +  + + G+L         +   +GAL    WV  ++
Sbjct: 205 YVRGGLSSDAVELFREMQANGVQADEVTVIGVL--------AAATDLGALELARWVRRFV 256

Query: 331 KKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           ++  I          ID      +++ A  +F  + +++V  WTSVI A AM G  ++A+
Sbjct: 257 EREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAV 316

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
            +F EM+  G  PD V FI +L+ACSH G+VDEG  +       Y I+PK++HYGCMVD+
Sbjct: 317 RVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDM 376

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
            GRAG +E +  F+ +MPI P+  IW SL+ ACR H  ++L E   + L    P ++  +
Sbjct: 377 FGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANY 436

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           ++L+N++A   R  + S IR ++   G+KK  G S++E  G VH+F +GD  +P  ++IY
Sbjct: 437 IMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIY 496

Query: 556 LMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIV 599
            M+ E+   L++ G                +E +LQ H E+LA+AF L+ T   T +R+V
Sbjct: 497 RMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVV 556

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C DCH+ +K  SQVY REIV+RD  RFHRF+ G CSC+D+W
Sbjct: 557 KNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 131/288 (45%), Gaps = 36/288 (12%)

Query: 124 FAIYLYLVTRTVLLNKC---GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           FA   Y+    + +  C   G L +   +FD++P    ++W+ MI  Y   G+  + + L
Sbjct: 158 FATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVEL 217

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             +M A GV  DEVT++ +++A T L  LE+ + +  F+E   +  S +L N L+D   K
Sbjct: 218 FREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAK 277

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG +  A  +     + +  VV WT+++          EA R+F+EM           ++
Sbjct: 278 CGDVDGAVAVF--EGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEM----------KVA 325

Query: 301 GMLNQDAEF--KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLW 358
           G+   D  F     +C+  G +  G              D +++ Y +     E  +  +
Sbjct: 326 GVPPDDVAFIGVLTACSHAGMVDEGCGY----------FDAMKVEYGI-----EPKIEHY 370

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC-SHGGL 405
             ++  +  AG  ++A++    M     +P+ V + +L+SAC +HG L
Sbjct: 371 GCMVDMFGRAGMVERAMEFVRTMP---IQPNPVIWRSLVSACRAHGRL 415


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/543 (32%), Positives = 293/543 (53%), Gaps = 26/543 (4%)

Query: 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
           + +Y    T LL +C  ++E  +LF+ + +RD I+W TM++ +T  G+  + L    +M 
Sbjct: 206 VVMYNTMITGLL-RCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMR 264

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            +G++ D+ T  S+++A   L  LE GK +H ++  +    +  + + LVDMY KC  I 
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIK 324

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
            A+    R      +++ WT L+ GY ++   +EA R+F EM    +      +  +++ 
Sbjct: 325 PAETAFRRMSCK--NIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISS 382

Query: 306 DAEF-------KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLW 358
            A         ++   A +  L H I V   +        +IE A+ LF E+   +   W
Sbjct: 383 CANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSW 442

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           T+++  YA  G A++ IDLF +M     KPD VTFI +LSACS  G V++G  +     +
Sbjct: 443 TALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQK 502

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            + I P   HY CM+DL  R+G L+E+  FI  MP+ PD   W +LL ACR   ++++ +
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQ 562

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A ++L E DP N  ++VLL +++A  G  + ++++R  +RD  +KK+ G S I+    V
Sbjct: 563 WAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKV 622

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE--TSL--------------QHRERLA 582
           H F++ D  +P S+ IY  L  +   + ++G +   +S+               H E+LA
Sbjct: 623 HIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLA 682

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           +AFGL+    +  IRIV NLR+C DCH+  K+ S++  R+I++RD  RFH+F  G CSC 
Sbjct: 683 IAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCG 742

Query: 643 DYW 645
           D+W
Sbjct: 743 DFW 745



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 172/368 (46%), Gaps = 54/368 (14%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPDEVTMVSLI 200
           L ++  LF  +  RD +S+N +I+ ++  G +   + L   +      V P  +TM +++
Sbjct: 88  LDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMV 147

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A + L D  +G+  H  +      ++  + + LV MY K G IG+A+++    E+D  +
Sbjct: 148 MAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFD--EMDGKN 205

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK---------- 310
           VV++ T+++G ++    +EARRLF+ M +R+ I+WT M++G      E +          
Sbjct: 206 VVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRF 265

Query: 311 -------------YKSCASIGALYHGIWVHVYIKKNQISIDN----------------IE 341
                          +C ++ AL  G  +H YI +     DN                I+
Sbjct: 266 QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYD-DNVFVGSALVDMYSKCRSIK 324

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
            A   F  +S KN+  WT++I  Y   G +++A+ +F EM+  G  PD  T  +++S+C+
Sbjct: 325 PAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCA 384

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMPIPPD 457
           +   ++EG  F         +   + HY      +V L G+ G +E++      M     
Sbjct: 385 NLASLEEGAQF-----HCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ 439

Query: 458 VSIWSSLL 465
           VS W++L+
Sbjct: 440 VS-WTALV 446


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 173/538 (32%), Positives = 290/538 (53%), Gaps = 41/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +++   +F+ +P+ DVI W+ +IS Y       +   +  +M    V P+E ++  
Sbjct: 298 KCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSG 357

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A   +  L++G+ +H  + +   +    + N L+D+Y KC  +  + ++     + +
Sbjct: 358 VLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIF--RSLRD 415

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            + V W T++ GY +S   ++A  +F EM   +++S  +  S +L        ++CA+  
Sbjct: 416 ANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVL--------RACANTA 467

Query: 319 ALYHGIWVHVYIKKNQISIDNIEL---------------AYDLFSEISEKNVYLWTSVIA 363
           ++ H + +H  I+K+  + D I                 A  +F  I + +V  W ++I+
Sbjct: 468 SIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIIS 527

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            YA+ G A  A++LF  M ++ TKP+ VTF+ALLS C   GLV++G    +  +  + IK
Sbjct: 528 GYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIK 587

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P M HY C+V LLGRAG L ++  FI  +P  P   +W +LL +C  H+NV L + + + 
Sbjct: 588 PSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEK 647

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + E +P ++  +VLL+N+YA AG LD ++ +R  +R++G+KK++G S +E  G VH F+ 
Sbjct: 648 VLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSV 707

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQ--------HRERLAVAFGL 587
           G   +P    I  ML  + +   ++G        L +   +        H ERLA+A+GL
Sbjct: 708 GSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGL 767

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             T     IRI+ NLR C DCH+  KV S++  REIV+RD  RFH F  G CSC DYW
Sbjct: 768 SMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 171/385 (44%), Gaps = 32/385 (8%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG +     +FD +  +D ++W  M+SCY+   +  + L   SKM   G  P+   + S+
Sbjct: 198 CGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSV 257

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A   L    +GK +H    ++       +   L+DMY KCG I +A+ +      D  
Sbjct: 258 LKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHD-- 315

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           DV+LW+ L+S Y +S + ++A  +F  M+  +++     +SG+L        ++CA++  
Sbjct: 316 DVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVL--------QACANVAF 367

Query: 320 LYHGIWVHVYIKK----------NQI-----SIDNIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H  + K          N +        N+E + ++F  + + N   W ++I  
Sbjct: 368 LDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVG 427

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF--LSKKSRVYNI 422
           Y  +G A+ A+ +F EM        QVTF ++L AC++   +        L +KS   N 
Sbjct: 428 YCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNND 487

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
                    ++D   + G + ++     S+ I  DV  W++++     H     A   F 
Sbjct: 488 TIVCNS---LIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHGRATDALELFN 543

Query: 483 HLTETDP-LNDGAHVLLANIYAKAG 506
            + ++D   ND   V L ++    G
Sbjct: 544 RMNKSDTKPNDVTFVALLSVCGSTG 568



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 151/351 (43%), Gaps = 32/351 (9%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
            VLLN   K G L    +LFD +P R+++S+ T++  Y   G + E  GL  ++  EG  
Sbjct: 88  NVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHE 147

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
            +   + +++     +    +   +H    +     +  + + L+D Y  CG +  A+ +
Sbjct: 148 VNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCV 207

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                I   D V WT +VS Y +++  ++A   F +M          +++ +L       
Sbjct: 208 FD--GIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCL- 264

Query: 311 YKSCASIGALYHGIWVHVYIKKNQ----------ISIDNIELAYDLFSEISEKNVYLWTS 360
             S A +G   HG  V                       IE A  +F  I   +V LW+ 
Sbjct: 265 --SSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSF 322

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+ YA +   ++A ++FL M  +   P++ +   +L AC++   +D G        +++
Sbjct: 323 LISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLG-------QQIH 375

Query: 421 NIKPKMQHYG------CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           N+  K+ +         ++D+  +  ++E S     S+    +VS W++++
Sbjct: 376 NLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVS-WNTII 425


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/453 (36%), Positives = 255/453 (56%), Gaps = 56/453 (12%)

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           AQKL  +  I   ++V+ T ++SGY +    ++AR +FD+M E++L+ W+ MISG    D
Sbjct: 2   AQKLFTK--ISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESD 59

Query: 307 AE------------FKYK-----------SCASIGALYHGIWVHVYIKKNQIS------- 336
                         F  K           +CA +G L    W+H+Y+ KN +        
Sbjct: 60  KPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNN 119

Query: 337 --ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
             ID      N+  A  +F ++  +NV  WTS+I A+A+ G A  A+  F +M++   KP
Sbjct: 120 ALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKP 179

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           + VTF+ +L ACSH GLV+EG    +  +  +NI PK +HYGCMVDL GRA  L ++   
Sbjct: 180 NGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALEL 239

Query: 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
           + +MP+ P+V IW SL+ AC+ H   +L E A K + E +P +DGA V L+NIYAK  R 
Sbjct: 240 VETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRW 299

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI--EMTL- 565
            D+  +R  ++  G+ K+ G S IE    V++F   D  +  +++IY  L+E+  E+ L 
Sbjct: 300 QDVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLV 359

Query: 566 -------------QQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
                        +++G +E  L H E+LA+ +GL+   + + IRIV NLR+C DCH+F+
Sbjct: 360 GYTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFI 419

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           K+ S+VY  EI++RD  RFH ++ G CSC DYW
Sbjct: 420 KLVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 39/186 (20%)

Query: 342 LAYDLFSEIS-------------------------------EKNVYLWTSVIAAYAMAGH 370
           +A  LF++IS                               EK++  W+++I+ YA +  
Sbjct: 1   MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDK 60

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQ 427
            Q+A++LF EM+  G KPDQVT ++++SAC+  G++D     + ++ K      +   + 
Sbjct: 61  PQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNG----LGGALP 116

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
               ++D+  + G+L  +      M    +V  W+S++ A   H +   A   F  + + 
Sbjct: 117 VNNALIDMYAKCGNLGAARGVFEKMQ-SRNVISWTSMINAFAIHGDASNALKFFYQMKDE 175

Query: 488 DPLNDG 493
           +   +G
Sbjct: 176 NIKPNG 181


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 280/536 (52%), Gaps = 35/536 (6%)

Query: 138  NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            +KC  L ++ +LFD++P RD +S+N +I+ Y         L L  +M   G     +   
Sbjct: 480  SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 539

Query: 198  SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            +++S    L D+ +GK +H  L    +     L N L+DMY KCG +  A+         
Sbjct: 540  TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS-- 597

Query: 258  EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL------------ISWTLMISGMLNQ 305
            E   + WT L++GYV++ + +EA +LF +M    L             S +L + G+  Q
Sbjct: 598  EKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQ 657

Query: 306  DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
               +  +S          + V +Y K        ++ A   F E+ E+N   W +VI+AY
Sbjct: 658  LHSYLIRSGYKSSVFSGSVLVDMYAK-----CGCLDEALRTFDEMPERNSISWNAVISAY 712

Query: 366  AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
            A  G A+ AI +F  M   G  PD VTF+++L+ACSH GL DE   +       Y+I P 
Sbjct: 713  AHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPW 772

Query: 426  MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
             +HY C++D LGR G   +    +  MP   D  IW+S+L +CR H N +LA  A   L 
Sbjct: 773  KEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLF 832

Query: 486  ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
              +P +   +V+L+NIYA+AG+ +D + ++  +RD G++K+ GYS +E    ++ F S D
Sbjct: 833  GMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASND 892

Query: 546  IFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ETSLQHRERLAVAFGLIS 589
            + +P  +EI   L+ +   + +QG +                E+   H ERLA+AF L++
Sbjct: 893  LTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMN 952

Query: 590  TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            T   T IRI+ NL  C DCH+ +K+ S++ NR+I++RD+ RFH F+ G CSC DYW
Sbjct: 953  TPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 133/321 (41%), Gaps = 36/321 (11%)

Query: 89  LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQ 148
           L YA  +   G  P++ I   I    ++ G   E     L       + +KCG L     
Sbjct: 536 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED----LLGNALIDMYSKCGMLDAAKS 591

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
            F     +  ISW  +I+ Y   G + E L L S M   G+ PD  T  S+I A + L  
Sbjct: 592 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 651

Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
           + +G+ LH +L  S  K S    + LVDMY KCG + EA +     E+ E + + W  ++
Sbjct: 652 IGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFD--EMPERNSISWNAVI 709

Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328
           S Y    E   A ++F+ M+       ++    +L         +C+  G L      + 
Sbjct: 710 SAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVL--------AACSHNG-LADECMKYF 760

Query: 329 YIKKNQISIDNIELAY----------DLFSEIS--------EKNVYLWTSVIAAYAMAGH 370
           ++ K+Q SI   +  Y            FS++         + +  +WTS++ +  + G+
Sbjct: 761 HLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGN 820

Query: 371 ---AQKAIDLFLEMEETGTKP 388
              A+ A D    ME T   P
Sbjct: 821 QELARVAADKLFGMEPTDATP 841



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/439 (21%), Positives = 171/439 (38%), Gaps = 105/439 (23%)

Query: 121 QEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           + +F++ L L       +  G L     LF   P+R+  +W  M+  + + G   + L L
Sbjct: 286 KNIFSLNLILSA----YSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSL 341

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
              M  EGV PD VT+ ++++    L    +  +LH F  +  +     + N L+D Y K
Sbjct: 342 FRAMLGEGVIPDRVTVTTVLN----LPGCTV-PSLHPFAIKFGLDTHVFVCNTLLDAYCK 396

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSG------------------------------ 270
            G +  A+++    E+ + D V +  ++ G                              
Sbjct: 397 HGLLAAARRVF--LEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLL 454

Query: 271 -YVKSNER-----------------------DEARRLFDEMVERNLISWTLMISG-MLNQ 305
            Y  S  R                       D+ RRLFDEM ER+ +S+ ++I+    NQ
Sbjct: 455 QYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQ 514

Query: 306 DAE------------------FKYKSCASIGA----LYHGIWVHVYIKKNQISIDN---- 339
            A                     Y +  S+      ++ G  +H  +    ++ ++    
Sbjct: 515 CAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGN 574

Query: 340 -----------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388
                      ++ A   FS  SEK+   WT++I  Y   G  ++A+ LF +M   G +P
Sbjct: 575 ALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRP 634

Query: 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
           D+ TF +++ A S   ++  G    S   R    K  +     +VD+  + G L+E+   
Sbjct: 635 DRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRT 693

Query: 449 ITSMPIPPDVSIWSSLLRA 467
              MP    +S W++++ A
Sbjct: 694 FDEMPERNSIS-WNAVISA 711



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 32/127 (25%)

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
           + S     AR +FD+M  +N+ S  L++S          Y S   + A  H         
Sbjct: 268 LSSGHLHRARAMFDQMPHKNIFSLNLILSA---------YSSSGDLPAAQH--------- 309

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                         LF     +N   WT ++ A+A AG    A+ LF  M   G  PD+V
Sbjct: 310 --------------LFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRV 355

Query: 392 TFIALLS 398
           T   +L+
Sbjct: 356 TVTTVLN 362


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 192/591 (32%), Positives = 308/591 (52%), Gaps = 58/591 (9%)

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL-FD 151
           + I+R G  P +K    +  + ++  Y +        L+T+ + L    +      L F 
Sbjct: 13  EAIVRAG--PRVKQLQQVHAHLIVTSYGRS-----RSLLTKLITLACSARAIAYTHLLFL 65

Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
            +P  D   +N++I   + + +    +    +M +  VSP   T  S+I +   L  L++
Sbjct: 66  SVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKI 125

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           GK +H     S   +   +   LV  Y KCG +  A+++  R  + E  VV W +LVSG+
Sbjct: 126 GKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDR--MPEKSVVAWNSLVSGF 183

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVY 329
            ++   ++A R+F +M E          SG     A F     +CA  GA+  G WVH Y
Sbjct: 184 EQNGLAEDAIRVFYQMRE----------SGFEPDSATFVSLLSACAQTGAISLGSWVHQY 233

Query: 330 IKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
           I    + ++               ++  A ++F ++ E NV  WT++I+AY   G+ ++A
Sbjct: 234 IVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQA 293

Query: 375 IDLFLEMEE-TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           +DLF +ME+  G+ P+ VTF+A+LSAC+H GLV++G     + +  Y + P ++H+ C+V
Sbjct: 294 VDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIV 353

Query: 434 DLLGRAGHLEESANFITSMPIPPDVS---IWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           D+LGRAG L+E+  FI  +    + +   +W+++L AC+ H+N  L     K L   +P 
Sbjct: 354 DMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPE 413

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
           N G HV+L+NIYA +G+ D++S IR ++    L+KQ+GYS+IE     + F+ GD  +  
Sbjct: 414 NPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQE 473

Query: 551 SEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSEKT 594
           + EIY  L  +    ++ G    S +                H E+LAVAFGL+ T + +
Sbjct: 474 TGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-S 532

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            I +V NLRIC DCHS  K  S V NR+I++RD  RFH FQ G CSC DYW
Sbjct: 533 AITVVKNLRICEDCHSAFKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 122/290 (42%), Gaps = 54/290 (18%)

Query: 35  ANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
           +NV P +     V +SC+ +   +    +H H + +    D  +   +  F    GD+  
Sbjct: 101 SNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEA 160

Query: 92  AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYL----------------------- 128
           A+Q+  +  E  +  WNS++     NG  ++   ++                        
Sbjct: 161 ARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQ 220

Query: 129 ------------YLVTR---------TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTM 164
                       Y+V+          T L+N   +CG + +  ++FDK+   +V +W  M
Sbjct: 221 TGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAM 280

Query: 165 ISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           IS Y + G  ++ + L +KM  + G  P+ VT V+++SA      +E G++++  + ES 
Sbjct: 281 ISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESY 340

Query: 224 MKISGSLLNY-LVDMYFKCGKIGEAQKLLGRYEI--DEVDVVLWTTLVSG 270
             I G   +  +VDM  + G + EA + + + +   +     LWT ++  
Sbjct: 341 RLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGA 390


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 176/543 (32%), Positives = 290/543 (53%), Gaps = 40/543 (7%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T  L+  G +   C +F ++       +NTM+  +       E L    +M   GV PD 
Sbjct: 29  TCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDN 88

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T  +L+ A  +L  +E G  +H  + +  ++    + N L+ MY KCG+IG    +   
Sbjct: 89  FTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVF-- 146

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            +++E  V  W+ L++ +       +  RL  +M   N   W    S +++        +
Sbjct: 147 EQMNERSVASWSALITAHASLGMWSDCLRLLGDM--SNEGYWRAEESILVS-----VLSA 199

Query: 314 CASIGALYHGIWVHVYIKKNQ------ISIDNIELAYD---------LFSEISEKNVYLW 358
           C  +GAL  G  VH ++ +N       +    IE+            LF ++++KN   +
Sbjct: 200 CTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSY 259

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           + +I+  AM G+ ++ + +F EM E G +PD + ++ +L+ACSH GLV EG    ++   
Sbjct: 260 SVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKL 319

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            + I+P +QHYGCMVDL+GRAG ++E+   I SMP+ P+  +W SLL A + H N++  E
Sbjct: 320 EHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGE 379

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A K L + D      +V+L+N+YA+A R +D++R R  +   GL ++ G+SL+E    +
Sbjct: 380 IAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKM 439

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLA 582
           H+F S D  +P SE +Y ML ++E  L+ +G    + Q                H ++LA
Sbjct: 440 HRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLA 499

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           +A+ LI TS+ + +RIV NLR+C DCH++ K+ S +++REI +RD  RFH F+ G CSCR
Sbjct: 500 IAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCR 559

Query: 643 DYW 645
           DYW
Sbjct: 560 DYW 562


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 175/552 (31%), Positives = 294/552 (53%), Gaps = 48/552 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L    ++F  L   D ISWN++I+     G+  + L L ++M    V  DE  + +
Sbjct: 325 KCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPT 384

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++   +       G+ LH +  +S M  S  + N ++ MY KCG   +A  +     +  
Sbjct: 385 ILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLR- 443

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS----------------GM 302
            + + WT +++ + +S +  +AR  FD M ERN+++W  M+S                 M
Sbjct: 444 -NTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSM 502

Query: 303 LNQDAEFKY-------KSCASIGALYHGIWVHVYIKKNQISIDN---------------I 340
            +   +  +       ++CA +  +  G+ V  +  K  +S++                I
Sbjct: 503 RSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLI 562

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           + A + F  I +K++  W +++AA+A  G   K ID F +M +T  KP+ ++++++LS C
Sbjct: 563 KEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGC 622

Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
           SH GLV EG  +    +RV+ I P  +H+ CMVDLLGRAG LE++ + I  MP  P+ ++
Sbjct: 623 SHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATV 682

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           WS+LL +CR H +++LAE A K L E D      +VLL+N+Y+++G LD+++ +R  ++ 
Sbjct: 683 WSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKV 742

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQE 572
            G++   G S IE    VH FT  +  +P  +E+YL L E+   ++  G        +  
Sbjct: 743 KGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGKYITVESSVHR 802

Query: 573 TSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
           +   H E+LA AFGL++      I ++ NLR+C DCH  +K+ S V +RE+++RD  RFH
Sbjct: 803 SKKYHSEKLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFH 862

Query: 633 RFQGGQCSCRDY 644
            F+ G CSC+DY
Sbjct: 863 HFKDGICSCKDY 874



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 212/479 (44%), Gaps = 82/479 (17%)

Query: 36  NVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYA 92
           N  P S   +M  ++C S+ +     ++H+ +       +  I   V    V  GD+  A
Sbjct: 143 NYDPFSFTSVM--KACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLA 200

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152
           + +    + P +  WNS     +I GY Q ++  Y  L                 Q+F++
Sbjct: 201 ETVFFDIERPSLFCWNS-----MIYGYSQ-MYGPYKAL-----------------QIFNR 237

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +P RD +SWNT+IS ++  G   + L +  +M  +G SP+ +T  S++SA     DL+ G
Sbjct: 238 MPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWG 297

Query: 213 KNLH---LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
            +LH   L +E S   + G   N L+DMY KCG +  A+++     + E D + W +L++
Sbjct: 298 AHLHARILRMEHSLDLVFG---NGLIDMYAKCGCLDLAKRVFK--SLREHDHISWNSLIT 352

Query: 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH-- 327
           G V     ++A  LF++M   +++    ++  +L   +   Y   AS G L HG  +   
Sbjct: 353 GVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDY---ASTGELLHGYTIKSG 409

Query: 328 -------------VYIK----------------KNQISIDNIELAYD----------LFS 348
                        +Y K                +N IS   +  A+            F 
Sbjct: 410 MGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFD 469

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            + E+N+  W S+++ Y   G +++ + L++ M   G +PD +TF   + AC+   +V  
Sbjct: 470 MMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKL 529

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           G   ++  ++ + +   +     +V +  R G ++E+ N   S+    D+  W+++L A
Sbjct: 530 GMQVVTHATK-FGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSID-DKDLISWNAMLAA 586



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 146/329 (44%), Gaps = 49/329 (14%)

Query: 86  TGDL--GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL------- 136
           TG+L  GY    I+ G      + N+II      G   +   ++  +  R  +       
Sbjct: 397 TGELLHGYT---IKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMIT 453

Query: 137 -LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
             ++ G + +    FD +P R++++WN+M+S Y   G   EGL L   M + GV PD +T
Sbjct: 454 AFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWIT 513

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
             + I A   L  +++G  +     +  + ++ S+ N +V MY +CG I EA+       
Sbjct: 514 FTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFD--S 571

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMISGMLNQDAEFKY 311
           ID+ D++ W  +++ + ++    +    F++M++     N IS+  ++SG          
Sbjct: 572 IDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSG---------- 621

Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
             C+ +G +  G          +   D++   +     IS  N +  + ++     AG  
Sbjct: 622 --CSHMGLVAEG----------KHYFDSMTRVFG----ISPTNEHF-SCMVDLLGRAGLL 664

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           ++A DL   +E    KP+   + ALL +C
Sbjct: 665 EQAKDL---IEGMPFKPNATVWSALLGSC 690



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/472 (20%), Positives = 185/472 (39%), Gaps = 98/472 (20%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + + CG   +  Q+F +  +R++ +WNTMI    S     +   L  +M       D V+
Sbjct: 52  MYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVR--VKDSVS 109

Query: 196 MVSLISARTK--------------LRDL-EMGKNLHLFLEESTMKISGSL---------- 230
             ++IS  ++              +RD  + GKN   F   S MK  GSL          
Sbjct: 110 WTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLH 169

Query: 231 --------------LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
                          N +V MY KCG +  A+ +   ++I+   +  W +++ GY +   
Sbjct: 170 ALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVF--FDIERPSLFCWNSMIYGYSQMYG 227

Query: 277 RDEARRLFDEMVERNLISWTLMIS----------------GMLNQDAEFKY-------KS 313
             +A ++F+ M ER+ +SW  +IS                 M NQ     +        +
Sbjct: 228 PYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSA 287

Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
           CAS   L  G  +H  I + + S+D                ++LA  +F  + E +   W
Sbjct: 288 CASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISW 347

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
            S+I      G  + A+ LF +M  +    D+     +L  CS       G D+ S    
Sbjct: 348 NSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCS-------GPDYASTGEL 400

Query: 419 V--YNIKPKMQHYG----CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
           +  Y IK  M         ++ +  + G  +++      MP+   +S W++++ A     
Sbjct: 401 LHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTIS-WTAMITAFSRSG 459

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           ++  A   F  + E + +   +   + + Y + G  ++  ++ + +R  G++
Sbjct: 460 DIGKARGYFDMMPERNIVTWNS---MLSTYVQNGFSEEGLKLYVSMRSNGVQ 508


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 195/546 (35%), Positives = 293/546 (53%), Gaps = 47/546 (8%)

Query: 138 NKCGKLKEVCQLFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           +K G LKE  ++F  L  +RD +SWN+M+  Y       + L L  +M   G+  D  T+
Sbjct: 184 SKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTL 243

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK-IGEAQKLLGRYE 255
            S+++A T ++DL  G   H  L +S    +  + + L+D+Y KCG  + + +K+    E
Sbjct: 244 ASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFD--E 301

Query: 256 IDEVDVVLWTTLVSGY-VKSNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFK 310
           I   D+VLW T++SGY +  +  DEA   F ++       +  S   +IS   N      
Sbjct: 302 ISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNM----- 356

Query: 311 YKSCASIGALYHGIWVHVYIKKNQISIDNIELAY-----------DLFSEISEKNVYLWT 359
             S  S G   HG+ + + I  N+IS++N  +A             LF  + E N   + 
Sbjct: 357 --SSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYN 414

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           S+IA YA  G   +++ LF  M E    P  +TFI++L+AC+H G V++G  + +   + 
Sbjct: 415 SMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQK 474

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
           + I+P+  H+ CM+DLLGRAG L E+   I ++P  P    WS+LL ACR H NV+LA  
Sbjct: 475 FGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIK 534

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
           A   L + DPLN   +V+LANIY+  GRL D + +R  +RD G+KK+ G S IE    +H
Sbjct: 535 AANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIH 594

Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-----------------QETSLQ---HRE 579
            F + D F+P  ++I   L E+   +++ G                  +E  L+   H E
Sbjct: 595 IFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSE 654

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           +LAV+FGL+ST E   I +  NLRIC DCH+ +K  S+V  REI +RD+ RFH F+ GQC
Sbjct: 655 KLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQC 714

Query: 640 SCRDYW 645
           SC  YW
Sbjct: 715 SCGGYW 720



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 182/402 (45%), Gaps = 33/402 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           QLFD++P  D +S+NT+I+ Y   G  +    L  +M    +  D  T+  +I+A     
Sbjct: 95  QLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGI-- 152

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           ++ + + LH     + +    S+ N L+  Y K G + EA+++   +  ++ D V W ++
Sbjct: 153 NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIF-HWLSEDRDEVSWNSM 211

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           V  Y++  E  +A  L+ EM  R LI     ++ +L         +  ++  L  G+  H
Sbjct: 212 VVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLT--------AFTNVQDLLGGLQFH 263

Query: 328 V------YIKKNQISIDNIEL----------AYDLFSEISEKNVYLWTSVIAAYAMAGH- 370
                  Y + + +    I+L             +F EIS  ++ LW ++I+ Y++    
Sbjct: 264 AKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDL 323

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
           + +A++ F +++  G +PD  + + ++SACS+     +G        ++     ++    
Sbjct: 324 SDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNN 383

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-- 488
            ++ +  + G+L ++     +MP    VS ++S++     H     + H F+ + E D  
Sbjct: 384 ALIAMYSKCGNLRDAKTLFDTMPEHNTVS-YNSMIAGYAQHGMGFQSLHLFQRMLEMDFT 442

Query: 489 PLNDGAHVLLANIYAKAGRLDDMS-RIRMKLRDMGLKKQLGY 529
           P N     +LA   A  GR++D      M  +  G++ + G+
Sbjct: 443 PTNITFISVLAAC-AHTGRVEDGKIYFNMMKQKFGIEPEAGH 483



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
            + +KCG L++   LFD +P  + +S+N+MI+ Y   GM  + L L  +M     +P  +
Sbjct: 387 AMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNI 446

Query: 195 TMVSLISARTKLRDLEMGK-NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           T +S+++A      +E GK   ++  ++  ++      + ++D+  + GK+ EA++L+  
Sbjct: 447 TFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIET 506

Query: 254 YEIDEVDVVLWTTLVSG 270
              D      W+ L+  
Sbjct: 507 IPFDP-GFFXWSALLGA 522



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 135/300 (45%), Gaps = 48/300 (16%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           RDL  GK+LH    +S +  S  L N+ + +Y KC ++  A+++       + +V  + T
Sbjct: 22  RDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFD--HTHDCNVFSFNT 79

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ-DAEFKYK------------- 312
           L+S Y K +  + A +LFDEM + + +S+  +I+    + D +  ++             
Sbjct: 80  LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMD 139

Query: 313 ---------SCA-SIGAL--YHGIWVHVYIKKNQISIDN-----------IELAYDLFSE 349
                    +C  ++G +   H + V V    + +S+ N           ++ A  +F  
Sbjct: 140 GFTLSGIITACGINVGLIRQLHALSV-VTGLDSYVSVGNALITSYSKNGFLKEARRIFHW 198

Query: 350 ISE-KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           +SE ++   W S++ AY       KA++L+LEM   G   D  T  ++L+A ++   +  
Sbjct: 199 LSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLG 258

Query: 409 GYDFLSK--KSRVYNIKPKMQHYGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           G  F +K  KS  +    +  H G  ++DL  + G        +      PD+ +W++++
Sbjct: 259 GLQFHAKLIKSGYH----QNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMI 314


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 174/526 (33%), Positives = 273/526 (51%), Gaps = 59/526 (11%)

Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
            L L   +   G  PD +     ++   + R       LH    +        + N L+ 
Sbjct: 59  ALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIH 118

Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
            Y  CG + +A+K+       EVD++ W  L+ GY +  +    R  F +M  R+ +SW 
Sbjct: 119 AYSVCGMLFDARKVFDHGP--EVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWN 176

Query: 297 LMISGMLNQD------AEFK------------------YKSCASIGALYHGIWVHVYIKK 332
            +I+  +         A F+                    + A +GAL  G+W H Y+ +
Sbjct: 177 TVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCR 236

Query: 333 NQISIDN---------------IELAYDLF-SEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            +I +D                IE A  +F +  + ++V  W +++A +  +G +++A++
Sbjct: 237 KEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERALE 296

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF  ME +G  P+++TF  LL+ACSHGG V+EG  +  + +   +I+P + HYGCMVDL 
Sbjct: 297 LFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLF 356

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
            RAG  E++   I  MP+ PD ++W +L+ ACR + N +L + A   L E  P +   +V
Sbjct: 357 CRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGYV 416

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LL+NIYA  G    + ++R  + + G++K  G S IE  G +H+F SGD  +    ++Y 
Sbjct: 417 LLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVYE 476

Query: 557 MLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIV 599
           ML+EI   L+  G                ++E+SL  H ERLA+AFGLIST+  T IRIV
Sbjct: 477 MLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPIRIV 536

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+CGDCH+ +K+ S++Y R I++RD  RFHRF+ G CSC DYW
Sbjct: 537 KNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 141/346 (40%), Gaps = 57/346 (16%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++H H          ++   +       G L  A+++   G E ++  WN      L+ G
Sbjct: 96  QLHGHAAKRGAASHRRVRNGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNC-----LLRG 150

Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
           Y Q                   G L+E    F ++P RD +SWNT+I+   + G + E +
Sbjct: 151 YAQG---------------RDTGALRE---FFAQMPARDSVSWNTVIAWCVANGEHEEAV 192

Query: 179 GLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
            +  +M A     PD VT+VS+ISA   L  L  G   H ++    +++   L + L++M
Sbjct: 193 AVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINM 252

Query: 238 YFKCGKI-GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
           Y KCG I G          +  VD   W  +++G+  S   + A  LF  M     +   
Sbjct: 253 YSKCGFIEGAVYVFENSCALRSVDT--WNAMLAGFTASGCSERALELFTRMESSGFVPNK 310

Query: 297 LMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK--NQISIDNIELAYDLFSEISEKN 354
           +  + +LN        +C+  G +  GI    Y ++  N  SI              E +
Sbjct: 311 ITFNTLLN--------ACSHGGFVEEGIG---YFERMTNSSSI--------------EPD 345

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           +  +  ++  +  AG  +KA ++   M     +PD   + AL+ AC
Sbjct: 346 IAHYGCMVDLFCRAGLFEKAEEMIQMMP---MEPDAAVWKALVGAC 388


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 176/543 (32%), Positives = 290/543 (53%), Gaps = 40/543 (7%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T  L+  G +   C +F ++       +NTM+  +       E L    +M   GV PD 
Sbjct: 72  TCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDN 131

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T  +L+ A  +L  +E G  +H  + +  ++    + N L+ MY KCG+IG    +   
Sbjct: 132 FTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVF-- 189

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            +++E  V  W+ L++ +       +  RL  +M   N   W    S +++        +
Sbjct: 190 EQMNERSVASWSALITAHASLGMWSDCLRLLGDM--SNEGYWRAEESILVS-----VLSA 242

Query: 314 CASIGALYHGIWVHVYIKKNQ------ISIDNIELAYD---------LFSEISEKNVYLW 358
           C  +GAL  G  VH ++ +N       +    IE+            LF ++++KN   +
Sbjct: 243 CTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSY 302

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
           + +I+  AM G+ ++ + +F EM E G +PD + ++ +L+ACSH GLV EG    ++   
Sbjct: 303 SVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKL 362

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            + I+P +QHYGCMVDL+GRAG ++E+   I SMP+ P+  +W SLL A + H N++  E
Sbjct: 363 EHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGE 422

Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
            A K L + D      +V+L+N+YA+A R +D+++ R  +   GL ++ G+SL+E    +
Sbjct: 423 IAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKM 482

Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLA 582
           H+F S D  +P SE +Y ML ++E  L+ +G    + Q                H ++LA
Sbjct: 483 HRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLA 542

Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
           +A+ LI TS+ + IRIV NLR+C DCH++ K+ S +++REI +RD  RFH F+ G CSCR
Sbjct: 543 IAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCR 602

Query: 643 DYW 645
           DYW
Sbjct: 603 DYW 605



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 177/407 (43%), Gaps = 78/407 (19%)

Query: 43  DVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQGD 100
           + + + + CS+++EF++ H+ ++   L  D   ++ +      +  G + YA  I RQ D
Sbjct: 33  ECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMD 92

Query: 101 EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV------------------------- 135
           E     +N+++   + +   +E    Y  +  R V                         
Sbjct: 93  ELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQ 152

Query: 136 ----------------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173
                                 +  KCG++   C +F+++  R V SW+ +I+ + S+GM
Sbjct: 153 VHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGM 212

Query: 174 YREGLGLLSKMGAEGV-SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
           + + L LL  M  EG    +E  +VS++SA T L  L++G+++H FL  +   ++  +  
Sbjct: 213 WSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVET 272

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            L++MY KCG + +   L  +  + + + + ++ ++SG        E  R+F EM+E+ L
Sbjct: 273 SLIEMYLKCGSLYKGMCLFQK--MAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGL 330

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352
               ++  G+LN        +C+  G +  G+             + ++L + +     E
Sbjct: 331 EPDDIVYVGVLN--------ACSHAGLVQEGLQC----------FNRMKLEHGI-----E 367

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
             +  +  ++     AG   +A++L   M     +P+ V + +LLSA
Sbjct: 368 PTIQHYGCMVDLMGRAGKIDEALELIKSMP---MEPNDVLWRSLLSA 411


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 200/714 (28%), Positives = 336/714 (47%), Gaps = 115/714 (16%)

Query: 28  MRISRKFANVCPVSLDVIMVE--RSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEF 82
           + +SR+  +    + D  +V+  ++C    +++E ++IH ++I    + +  I   +   
Sbjct: 217 LELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSM 276

Query: 83  LVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGK 142
                 L  A+ +    ++  +  WNSII +  +NG     + ++  + + ++       
Sbjct: 277 YSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSI------- 329

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
                         D+I+WN+++S +   G Y   L  +  + + G  PD  ++ S + A
Sbjct: 330 ------------KPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQA 377

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK-------------------C-- 241
             +L    +GK +H ++  S ++    +   LVDMY K                   C  
Sbjct: 378 VIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAW 437

Query: 242 ----------GKIGEAQKLL--GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-- 287
                     G    A+KLL   + E  + D+V W +LVSGY  S   +EA  + + +  
Sbjct: 438 NSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKS 497

Query: 288 --VERNLISWTLMISGMLN--------------QDAEFK---------YKSCASIGALYH 322
             +  N++SWT MISG                 Q+   K          ++CA    L  
Sbjct: 498 LGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKK 557

Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H +  K+    D                +++A+++F  I EK +  W  ++  YA+
Sbjct: 558 GEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAI 617

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            GH ++   LF  M +TG +PD +TF ALLS C + GLV +G+ +       Y+I P ++
Sbjct: 618 YGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIE 677

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HY CMVDLLG+AG L+E+ +FI +MP   D SIW ++L ACR H+++K+AE A ++L   
Sbjct: 678 HYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRL 737

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P N   +VL+ NIY+   R  D+ R++  +  MG+K    +S I+    +H F++    
Sbjct: 738 EPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKS 797

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTS 591
           +P   EIY  L ++   +++ G                 ++  L H E+LA+ +GL+   
Sbjct: 798 HPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIK 857

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             T IR+V N RIC DCH+  K  S   NREI +RD GRFH F  G+CSC D W
Sbjct: 858 GGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGECSCNDRW 911



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 196/453 (43%), Gaps = 59/453 (13%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KC  +    Q+FD+ P ++   WNT++        + + L L  +M +      + T
Sbjct: 175 LYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGT 234

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V L+ A  KLR L  GK +H ++       + S+ N +V MY +  ++  A+ +    E
Sbjct: 235 IVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTE 294

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGML-------- 303
             + ++  W +++S Y  +   + A  LF EM    ++ ++I+W  ++SG L        
Sbjct: 295 --DHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENV 352

Query: 304 ------NQDAEFKYKSCASIGALYH---------GIWVHVYIKKNQ-------------- 334
                  Q A FK  SC+   AL           G  +H YI +++              
Sbjct: 353 LTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDM 412

Query: 335 -ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
            I  D +E A  +F     KN+  W S+I+ Y   G    A  L ++M+E G K D VT+
Sbjct: 413 YIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTW 472

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP 453
            +L+S  S  G  +E    +++   +  + P +  +  M+    +  +  ++  F + M 
Sbjct: 473 NSLVSGYSMSGCSEEALAVINRIKSL-GLTPNVVSWTAMISGCCQNENYTDALQFFSQMQ 531

Query: 454 ---IPPDVSIWSSLLRACRCHQNVKLAE--HAF--KHLTETDPLNDGAHVLLANIYAKAG 506
              + P+ +  S+LLRAC     +K  E  H F  KH    D     A   L ++Y+K G
Sbjct: 532 EENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATA---LIDMYSKGG 588

Query: 507 RLDDMSRIRMKLRDMGLK----KQLGYSLIEQG 535
           +L     +   +++  L       +GY++   G
Sbjct: 589 KLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHG 621



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 167/432 (38%), Gaps = 85/432 (19%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM-YREGLGLLSKMGAEGVSPDEVTMVSL 199
           G  +   ++F     R+ + WN+ +  + S G    E L +  ++  +GV  D   +  +
Sbjct: 78  GDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVV 137

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +     L +L +G  +H  L +   ++   L   L+++Y KC  I               
Sbjct: 138 LKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGI--------------- 182

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN--------------Q 305
                             D A ++FDE   +    W  ++   L               Q
Sbjct: 183 ------------------DRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQ 224

Query: 306 DAEFK---------YKSCASIGALYHGIWVHVYI----KKNQISIDN-----------IE 341
            A  K          ++C  + AL  G  +H Y+    + +  SI N           +E
Sbjct: 225 SASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLE 284

Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           LA  +F    + N+  W S+I++YA+ G    A DLF EME +  KPD +T+ +LLS   
Sbjct: 285 LARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLS--- 341

Query: 402 HGGLVDEGYDFLSKKSRVY---NIKPKMQHYGCMVDLLGRAGHL---EESANFITSMPIP 455
            G L+   Y+ +    R       KP        +  +   G+    +E   +I    + 
Sbjct: 342 -GHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLE 400

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
            DV + +SL+     +  ++ AE  F H   T   N  A   L + Y   G  D+  ++ 
Sbjct: 401 YDVYVCTSLVDMYIKNDCLEKAEVVFHH---TKNKNICAWNSLISGYTYKGLFDNAEKLL 457

Query: 516 MKLRDMGLKKQL 527
           +++++ G+K  L
Sbjct: 458 IQMKEEGIKADL 469


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 192/638 (30%), Positives = 321/638 (50%), Gaps = 90/638 (14%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLL 137
           G +  A++I+RQ +  ++  WNS+I+  + N   +E    +  +         V+ T ++
Sbjct: 334 GKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSII 393

Query: 138 NKCGKLKEV-------------------------------CQL-------FDKLPNRDVI 159
              G+L  +                               C L       F ++ ++D+I
Sbjct: 394 AASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLI 453

Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
           SW T+I+ Y     + E L L   +  + +  DE+ + S++ A + L+ + + K +H  +
Sbjct: 454 SWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHI 513

Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
               + +   + N LVD+Y KC  +G A ++     I   DVV WT+++S    +    E
Sbjct: 514 LRKGL-LDTVIQNELVDVYGKCRNMGYATRVF--ESIKGKDVVSWTSMISSSALNGNESE 570

Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID- 338
           A  LF  MVE  L + ++ +  +L+  A     +         G  +H Y+ +    ++ 
Sbjct: 571 AVELFRRMVETGLSADSVALLCILSAAASLSALN--------KGREIHCYLLRKGFCLEG 622

Query: 339 --------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384
                         +++ A  +F  I  K +  +TS+I AY M G  + A++LF +M   
Sbjct: 623 SIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHE 682

Query: 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
              PD ++F+ALL ACSH GL+DEG  FL      Y ++P  +HY C+VD+LGRA  + E
Sbjct: 683 NVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVE 742

Query: 445 SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504
           +  F+  M   P   +W +LL ACR H   ++ E A + L E +P N G  VL++N++A+
Sbjct: 743 AFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAE 802

Query: 505 AGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMT 564
            GR +D+ ++R K++  G++K  G S IE  G VHKFT+ D  +P S+EIY  L+E+   
Sbjct: 803 QGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRK 862

Query: 565 LQQ----------------QGLQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
           L++                +G +   L  H ER+A+A+GL+ T ++  +RI  NLR+C D
Sbjct: 863 LEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRD 922

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CH+F K+ S+++ R+IV+RD  RFH F+ G CSC D W
Sbjct: 923 CHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 138/274 (50%), Gaps = 20/274 (7%)

Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
            +  +CGK+ +  ++  ++ N DV++WN++I  Y    MY+E L   S M A G   DEV
Sbjct: 328 AMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEV 387

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           +M S+I+A  +L +L  G  LH ++ +     +  + N L+DMY KC       +   R 
Sbjct: 388 SMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLR- 446

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
            + + D++ WTT+++GY +++   EA  LF ++ ++ +    +++  +L   +  K    
Sbjct: 447 -MHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSM-- 503

Query: 315 ASIGALYHGIWVHVYIK-------KNQI-----SIDNIELAYDLFSEISEKNVYLWTSVI 362
                +   I  H+  K       +N++        N+  A  +F  I  K+V  WTS+I
Sbjct: 504 ----LIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
           ++ A+ G+  +A++LF  M ETG   D V  + +
Sbjct: 560 SSSALNGNESEAVELFRRMVETGLSADSVALLCI 593



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 129 YLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           +L  + V +  KCG L +  ++FD++P+R   +WNTMI  Y S G     L L   M  E
Sbjct: 117 FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVE 176

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV     +  +L+ A  KLRD+  G  LH  L +     +G ++N LV MY K   +  A
Sbjct: 177 GVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 236

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           ++L   ++ ++ D VLW +++S Y  S +  E   LF EM        +  I   L    
Sbjct: 237 RRLFDGFQ-EKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACD 295

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAY-----------DLFSEISEKNVY 356
            F Y   A +G   H   +      +++ + N  +A             +  +++  +V 
Sbjct: 296 GFSY---AKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVV 352

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
            W S+I  Y      ++A++ F +M   G K D+V+  ++++A
Sbjct: 353 TWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 107/479 (22%), Positives = 208/479 (43%), Gaps = 85/479 (17%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY---------LYLVTRTVLL 137
           G L  A+++  +  +     WN++I   + NG P    A+Y         L L +   LL
Sbjct: 130 GSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALL 189

Query: 138 NKCGKLKEV--------------------------------------CQLFDKLPNR-DV 158
             C KL+++                                       +LFD    + D 
Sbjct: 190 KACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDA 249

Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL- 217
           + WN+++S Y++ G   E L L  +M   G +P+  T+VS ++A       ++GK +H  
Sbjct: 250 VLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHAS 309

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
            L+ ST      + N L+ MY +CGK+ +A+++L   +++  DVV W +L+ GYV++   
Sbjct: 310 VLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL--RQMNNADVVTWNSLIKGYVQNLMY 367

Query: 278 DEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337
            EA   F +M+     S  + ++ ++         +   +  L  G+ +H Y+ K+    
Sbjct: 368 KEALEFFSDMIAAGHKSDEVSMTSII--------AASGRLSNLLAGMELHAYVIKHGWD- 418

Query: 338 DNIELAYDL----------------FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
            N+++   L                F  + +K++  WT+VIA YA      +A++LF ++
Sbjct: 419 SNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDV 478

Query: 382 EETGTKPDQVTFIALLSACS---HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
            +   + D++   ++L A S      +V E +  + +K  +  +   +Q+   +VD+ G+
Sbjct: 479 AKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV---IQNE--LVDVYGK 533

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
             ++  +     S+    DV  W+S++ +   + N   A   F+ + ET    D   +L
Sbjct: 534 CRNMGYATRVFESIK-GKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALL 591



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 144/327 (44%), Gaps = 36/327 (11%)

Query: 205 KLRDLEMGKNLH--LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
           K R +  G+ LH  +F    + ++   L   LV MY KCG + +A+K+    E+ +    
Sbjct: 92  KRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFD--EMPDRTAF 148

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCASI--- 317
            W T++  YV + E   A  L+          W + + G+    + F    K+CA +   
Sbjct: 149 AWNTMIGAYVSNGEPASALALY----------WNMRVEGVPLGLSSFPALLKACAKLRDI 198

Query: 318 --GALYHGIWVHV------YIKKNQISI----DNIELAYDLFSEISEK-NVYLWTSVIAA 364
             G+  H + V +      +I    +S+    D++  A  LF    EK +  LW S++++
Sbjct: 199 RSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSS 258

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           Y+ +G + + ++LF EM  TG  P+  T ++ L+AC        G +  +   +      
Sbjct: 259 YSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSS 318

Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
           ++     ++ +  R G + ++   +  M    DV  W+SL++    +   K A   F  +
Sbjct: 319 ELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLIKGYVQNLMYKEALEFFSDM 377

Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDM 511
                 +D   V + +I A +GRL ++
Sbjct: 378 IAAGHKSD--EVSMTSIIAASGRLSNL 402


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 191/594 (32%), Positives = 299/594 (50%), Gaps = 68/594 (11%)

Query: 87  GDLGYAQQI----IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGK 142
           GDL Y Q I     + G E +     +++ N LI           +Y+ +R V       
Sbjct: 166 GDLRYGQSIHGCICKYGFESD-----NLVSNPLI----------MMYMKSRCV------- 203

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
            ++  ++F+ + N D++SWN ++S +        G  +  +M  EG  P+  T +S++ +
Sbjct: 204 -EDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRS 262

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
            + L D E GK +H  + +++      +   LVDMY K   + +A     R  +   D+ 
Sbjct: 263 CSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDR--LVNRDIF 320

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            WT ++SGY ++++ ++A + F +M    +      ++  L+         C+ +  L +
Sbjct: 321 SWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLS--------GCSHMATLEN 372

Query: 323 GIWVH-VYIKKNQIS--------------IDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H V +K                      +E A  +F  +  +++  W ++I+ Y+ 
Sbjct: 373 GRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQ 432

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G  +KA++ F  M   G  PD+ TFI +LSACS  GLV+EG       S++Y I P ++
Sbjct: 433 HGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIE 492

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HY CMVD+LGRAG   E   FI  M + P   IW ++L AC+ H NV   E A K L E 
Sbjct: 493 HYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEM 552

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           +P+ D +++LL+NI+A  GR DD+  IR  +   G+KK+ G S +E  G VH F S D  
Sbjct: 553 EPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGS 612

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTS 591
           +P   EIY  L+++  +L   G                  E    H ERLA++F L+ST+
Sbjct: 613 HPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTN 672

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
               IRI  NLRIC DCH FMK+ S + N+EIV+RD  RFH F+ G CSC+D W
Sbjct: 673 AVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 181/408 (44%), Gaps = 47/408 (11%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + +KCG + +  ++F K+ N DV++W+ MI+     G  +E   L   M  +G  P++ T
Sbjct: 95  MYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFT 154

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + SL+S  T + DL  G+++H  + +   +    + N L+ MY K   + +  K+     
Sbjct: 155 LSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVF--EA 212

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           +   D+V W  L+SG+  S       R+F +M+             +L        +SC+
Sbjct: 213 MTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVL--------RSCS 264

Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
           S+     G  VH +I KN    D+               +E A   F  +  ++++ WT 
Sbjct: 265 SLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTV 324

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+ YA    A+KA+  F +M+  G KP++ T  + LS CSH   ++ G        +++
Sbjct: 325 IISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENG-------RQLH 377

Query: 421 NIKPKMQHYG------CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
            +  K  H+G       +VDL G+ G +E +      + I  D+  W++++     H   
Sbjct: 378 AVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQG 436

Query: 475 KLAEHAFKHLTETDPLNDGAHVL--------LANIYAKAGRLDDMSRI 514
           + A  AF+ +     + D A  +        +  +     R D MS+I
Sbjct: 437 EKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKI 484



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 152/355 (42%), Gaps = 32/355 (9%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +LF  +P ++ +SWN +++ Y  +G  ++ L L  KM        + T+ +++       
Sbjct: 6   RLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTG 65

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L  GK LH     S  +I   L   LVDMY KCG + +A K+  +  I   DVV W+ +
Sbjct: 66  SLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTK--IRNPDVVAWSAM 123

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++G  +     EA  LF  M  +        +S +++        +  ++G L +G  +H
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVS--------TATNMGDLRYGQSIH 175

Query: 328 VYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
             I K     DN               +E    +F  ++  ++  W ++++ +  +    
Sbjct: 176 GCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCG 235

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG-C 431
           +   +F +M   G KP+  TFI++L +CS   L+D  +        + N        G  
Sbjct: 236 RGPRIFYQMLLEGFKPNMFTFISVLRSCS--SLLDPEFGKQVHAHIIKNSSDDDDFVGTA 293

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           +VD+  +A  LE++      + +  D+  W+ ++     +     AE A K+  +
Sbjct: 294 LVDMYAKARCLEDAGVAFDRL-VNRDIFSWTVIISG---YAQTDQAEKAVKYFRQ 344



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 115/303 (37%), Gaps = 72/303 (23%)

Query: 280 ARRLFDEMVERNLISWTLMISGMLN--------------QDAEFKY---------KSCAS 316
           A RLF  M E+N +SW  +++G                 ++ E K+         K CA+
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
            G+L  G  +H    ++   ID                +  A  +F++I   +V  W+++
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGY 410
           I      GH Q+A +LF  M   G +P+Q T  +L+S  +           HG +   G+
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 411 D----------FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP----- 455
           +           +  KSR      K+       DL+     L    +  T    P     
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 456 -------PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG-AHVLLANIYAKAGR 507
                  P++  + S+LR+C    + +  +    H+ +    +D      L ++YAKA  
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARC 303

Query: 508 LDD 510
           L+D
Sbjct: 304 LED 306



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 10/130 (7%)

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           +ELA  LF  + EKN   W +++  YA  G  +K + LF +M+E  TK  + T   +L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKM---QHYGC-MVDLLGRAGHLEESANFITSMPIP 455
           C++ G + EG     K      ++      +  GC +VD+  + G + ++    T +   
Sbjct: 61  CANTGSLREG-----KVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIR-N 114

Query: 456 PDVSIWSSLL 465
           PDV  WS+++
Sbjct: 115 PDVVAWSAMI 124


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 188/587 (32%), Positives = 301/587 (51%), Gaps = 64/587 (10%)

Query: 108 NSIIENQLINGYP-----QEVFAIYLYLVTRTVLLNKC----------GKLKEVCQLFDK 152
           +  I N L+N Y      Q   A++  +  R ++   C          G L+    LFD+
Sbjct: 103 DKFISNHLLNLYSKFGELQAAVALFDRMPRRNIM--SCNIMIKAYLGMGNLESAKNLFDE 160

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +P+R+V +WN M++  T   M  E L L S+M      PDE ++ S++     L  L  G
Sbjct: 161 MPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAG 220

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           + +H ++ +   + +  +   L  MY K G + + ++++    + +  +V W TL+SG  
Sbjct: 221 QQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINW--MPDCSLVAWNTLMSG-- 276

Query: 273 KSNERDEARRLFDEMVERNLISWTLM-ISGMLNQDAEFK--YKSCASIGALYHGIWVHVY 329
                 +A++ + E V   L  + +M ++G       F     SC+ +  L  G  +H  
Sbjct: 277 ------KAQKGYFEGV---LDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAE 327

Query: 330 IKK---------------NQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
             K                      ++ +   F E  E++V LW+S+IAAY   G  ++A
Sbjct: 328 AVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEA 387

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434
           I LF EME+     +++TF++LL ACSH GL D+G        + Y +K ++QHY C+VD
Sbjct: 388 IKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVD 447

Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
           LLGR+G LEE+   I SMP+  D  IW +LL AC+ H+N ++A      +   DP +  +
Sbjct: 448 LLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSAS 507

Query: 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEI 554
           +VLLANIY+ A R  ++S +R  ++D  +KK+ G S +E    VH+F  GD  +P   EI
Sbjct: 508 YVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEI 567

Query: 555 YLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLISTSEKTTIRI 598
              L E+   +++QG + +TS                 H E+LA+AF L++T E   IR+
Sbjct: 568 NQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRV 627

Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + NLR+C DCH  +K  S++   EI++RD+ RFH F+ G CSC DYW
Sbjct: 628 MKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 181/409 (44%), Gaps = 50/409 (12%)

Query: 162 NTMISCYTSMGMYREGL-GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           N   +   S G  RE     LS++ AE   P   +  +L+ A   L+ + +GK LH  + 
Sbjct: 42  NEQFATLCSKGHIREAFESFLSEIWAE---PRLFS--NLLQACIPLKSVSLGKQLHSLIF 96

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
            S       + N+L+++Y K G++  A  L  R  +   +++    ++  Y+     + A
Sbjct: 97  TSGCSSDKFISNHLLNLYSKFGELQAAVALFDR--MPRRNIMSCNIMIKAYLGMGNLESA 154

Query: 281 RRLFDEMVERNLISWTLMISGM----LNQDAEFKY-------------------KSCASI 317
           + LFDEM +RN+ +W  M++G+    +N++A   +                   + CA +
Sbjct: 155 KNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHL 214

Query: 318 GALYHGIWVHVYIKKNQISID---NIELAY------------DLFSEISEKNVYLWTSVI 362
           GAL  G  VH Y+ K     +      LA+             + + + + ++  W +++
Sbjct: 215 GALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLM 274

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
           +  A  G+ +  +D +  M+  G +PD++TF++++S+CS   ++ +G    ++  +    
Sbjct: 275 SGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKA-GA 333

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
             ++     +V +  R G L++S           DV +WSS++ A   H   + A   F 
Sbjct: 334 SSEVSVVSSLVSMYSRCGCLQDSIKTFLECK-ERDVVLWSSMIAAYGFHGQGEEAIKLFN 392

Query: 483 HLTETD-PLNDGAHVLLANIYAKAGRLDD-MSRIRMKLRDMGLKKQLGY 529
            + + + P N+   + L    +  G  D  +    M ++  GLK +L +
Sbjct: 393 EMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQH 441


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 170/473 (35%), Positives = 249/473 (52%), Gaps = 61/473 (12%)

Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
           N L+ +Y   G + +A+++        +DVV W T+VSGY K  + + AR +F  M ER 
Sbjct: 120 NCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAAREVFVRMPERG 179

Query: 292 LISWTLMISGMLNQDAEFK------------------------YKSCASIGALYHGIWVH 327
           L+SW+ MI   + +  EF                          K+CA +GAL  G WVH
Sbjct: 180 LVSWSAMIDACV-RTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERGRWVH 238

Query: 328 VYIKKNQIS--IDNIEL----------------AYDLFSEISEKNVYLWTSVIAAYAMAG 369
            ++K  ++     N+ L                A+ +F  +   +V LW ++I   AM G
Sbjct: 239 RFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNG 298

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
           H ++A++LF  M + G  P++ TF+  L AC H G VDEG D   +  R + I+P+ +HY
Sbjct: 299 HGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVF-RSMRDHGIEPRREHY 357

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GC+ DLLGRAG LEE+   +  MP+ P  S W +L+ +C  H NV + E   K L E +P
Sbjct: 358 GCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEP 417

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
            + G +V L N+YA  G  +D   +R  + + G KK+ G S IE  G VH+F SGD  +P
Sbjct: 418 DDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHP 477

Query: 550 HSEEIYLMLNEIEMTLQQQGLQETSLQ-----------------HRERLAVAFGLISTSE 592
            +  IY +L ++E  LQ  G  + + Q                 H ERLA+AFG+++   
Sbjct: 478 QTRLIYALLEDMEQRLQLIGYVKDTSQVLLDMDNEEDKGNTLSYHSERLALAFGILNIPH 537

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
              IRIV NLR+C DCH   K+ S++Y REI++RD  RFH F+ G CSC D+W
Sbjct: 538 DMPIRIVKNLRVCRDCHVHAKLVSKLYQREIIVRDRHRFHLFRDGVCSCNDFW 590



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 1/151 (0%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + E   +FD + + DV+ WN MI      G  +  L L  +M  +G  P+E T V 
Sbjct: 265 KCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVV 324

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
            + A      ++ G+++   + +  ++        L D+  + G + EA+ +L    + E
Sbjct: 325 ALCACIHTGRVDEGEDVFRSMRDHGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPM-E 383

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
                W  L+S  +  N      R+  +++E
Sbjct: 384 PHASQWGALMSSCLMHNNVGVGERVGKKLIE 414


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 186/533 (34%), Positives = 279/533 (52%), Gaps = 41/533 (7%)

Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL-ISARTK 205
           C++F +  N  +   NTMI  ++      EG  L   +      P      S  +    K
Sbjct: 66  CRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIK 125

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
             DL  G  +H  +          L+  L+D+Y  C    +A K+    EI + D V W 
Sbjct: 126 SGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFD--EIPQRDTVSWN 183

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
            L+S Y+++    +   LFD+M  +N +   +      N       ++CA++GAL  G  
Sbjct: 184 VLISCYLRNKRTRDVLVLFDKM--KNDVDRCVKPD---NVTCLLALQACANLGALDFGKQ 238

Query: 326 VHVYIKKNQIS---------------IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           VH +I +N +S                 +++ AY++F+ + E+NV  WT++I+  AM G 
Sbjct: 239 VHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGF 298

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK-KSRVYNIKPKMQHY 429
            ++AI+ F EM + G  P++ T   LLSACSH GLVDEG  F  + +S  + IKP + HY
Sbjct: 299 GKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHY 358

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
           GC+VDLLGRA  L+++ + I SM + PD +IW +LL ACR H NV+L E    HL E   
Sbjct: 359 GCIVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKA 418

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
              G +VLL N Y+  G+ + ++ +R  ++   ++   G S IE  G VH+F   D+ +P
Sbjct: 419 EEAGDYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHP 478

Query: 550 HSEEIYLMLNEIEMTLQQQG-LQETSLQ----------------HRERLAVAFGLISTSE 592
             EEIY ML EI   L+  G + E + +                H E+LA+AFG++ T  
Sbjct: 479 RKEEIYKMLAEINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPP 538

Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +TTIR+  NLR C DCH+F K  S VY+R +++RD  RFH F+GG CSC D+W
Sbjct: 539 ETTIRVTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 8/153 (5%)

Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
           T   + ++CG + +  ++F+++  R+V+SW  MIS     G  +E +   ++M   G+SP
Sbjct: 257 TLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISP 316

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQK 249
           +E T+  L+SA +    ++ G      +     KI  +L +Y  +VD+  +   + +A  
Sbjct: 317 EEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYS 376

Query: 250 LLGRYEIDEVDVVLWTTL-----VSGYVKSNER 277
           L+   E+ + D  +W TL     V G V+  ER
Sbjct: 377 LIKSMEM-KPDSTIWRTLLGACRVHGNVELGER 408


>gi|125595828|gb|EAZ35608.1| hypothetical protein OsJ_19898 [Oryza sativa Japonica Group]
          Length = 602

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 161/427 (37%), Positives = 240/427 (56%), Gaps = 53/427 (12%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEM-------VERNLISWTLMISGMLNQDAEFKYK 312
           D+V W  ++S + ++    EA  L+  M       VE + ++   ++S            
Sbjct: 188 DLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLS------------ 235

Query: 313 SCASIGALYHGIWVHVYIKKNQISI-DNIEL----------------AYDLFSEISEKNV 355
           SCA  GA   G+ V  Y++       DN+ L                A +LF E+ E++V
Sbjct: 236 SCAHTGARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSV 295

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             WT++I  Y M G    A+DLF  M    T PD V  + LLSACSH G+ DEG  + S 
Sbjct: 296 VSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFST 355

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
             R Y ++PK++HY CMVDLLGRAG L+E+   I SMP+  D ++W +LL AC+ H+NV+
Sbjct: 356 MERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVE 415

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           + E AF+ +   +P N G +VL+ANIYA AG+LD ++++R  +R  GL+K+ G S +E  
Sbjct: 416 MGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHK 475

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ-----------------HR 578
           G VH F + D  +P +  IY ++ E+E  ++++   +   +                 H 
Sbjct: 476 GKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHS 535

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LAVAFGL++T   + I ++ NLR+CGDCHSF+K  S++ NR  ++RD  RFHRF+ G 
Sbjct: 536 EKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGA 595

Query: 639 CSCRDYW 645
           CSCRDYW
Sbjct: 596 CSCRDYW 602



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG L +  +LFD++P R V+SW T+I  Y   G     + L   M +E  +PD V MV 
Sbjct: 276 RCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVG 335

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           L+SA +     + G+     +E     +   L +Y  +VD+  + G++ EA++L+    +
Sbjct: 336 LLSACSHAGMYDEGRKYFSTMERDYC-LRPKLEHYTCMVDLLGRAGRLDEARELIASMPM 394

Query: 257 DEVDVVLWTTLVSG 270
              D  +W  L+  
Sbjct: 395 -AADGAVWGALLGA 407


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 295/556 (53%), Gaps = 54/556 (9%)

Query: 129 YLVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           YL TR ++   KC  L++  ++ D++P ++V+SW  MIS Y+  G   E L + ++M   
Sbjct: 88  YLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRS 147

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
              P+E T  +++++  +   L +GK +H  + +        + + L+DMY K G+I EA
Sbjct: 148 DGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEA 207

Query: 248 QKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMISGM 302
           +++   +E + E DVV  T +++GY +    +EA     RL  E +  N +++  +++ +
Sbjct: 208 REI---FECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTAL 264

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLF 347
                       + +  L HG   H ++ + ++          ID      N+  A  LF
Sbjct: 265 ------------SGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLF 312

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLF-LEMEETGTKPDQVTFIALLSACSHGGLV 406
             + E+    W +++  Y+  G  ++ ++LF L  +E   KPD VT +A+LS CSHG + 
Sbjct: 313 DNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRME 372

Query: 407 DEGYD-FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           D G + F    +  Y  KP  +HYGC+VD+LGRAG ++E+  FI  MP  P   +  SLL
Sbjct: 373 DTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLL 432

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
            ACR H +V + E   + L E +P N G +V+L+N+YA AGR  D++ +R  +    + K
Sbjct: 433 GACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTK 492

Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
           + G S I+    +H F + D  +P  EE+   + EI + ++Q G                
Sbjct: 493 EPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQ 552

Query: 571 -QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
            ++  L H E+LA+ FGLI+T E   IR+  NLRIC DCH+F K+ S+V+ RE+ +RD  
Sbjct: 553 KEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKN 612

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH+   G CSC DYW
Sbjct: 613 RFHQIVDGICSCGDYW 628


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 173/553 (31%), Positives = 292/553 (52%), Gaps = 50/553 (9%)

Query: 129 YLVTRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           Y+  R +L++ KCG + + C+LFD++P R+ +SW T+IS Y   G Y E   L   M  E
Sbjct: 168 YMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREE 227

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
                  T  ++I A   L  +  G+ LH    ++ +     +   L+DMY KCG + +A
Sbjct: 228 FYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDA 287

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGML 303
             +    E+ +  +V W ++++GY      +EA  L+ EM    V+ +  +++++I    
Sbjct: 288 HCVFD--EMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIII---- 341

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                   + C+ + ++     VH  + +N   +D                ++ A  +F 
Sbjct: 342 --------RICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFD 393

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
            +S +N+  W ++IA Y   GH ++AID+F +M   G  P+ VTF+A+LSACS  GL + 
Sbjct: 394 RMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFER 453

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G++     +R + +KP+  H+ CM++LLGR G L+E+   I   P  P  ++W++LLRAC
Sbjct: 454 GWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRAC 513

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R H N++L + A + L   +P     +++L NIY  +G+L + + +   L+  GL+    
Sbjct: 514 RVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPA 573

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QE 572
            S IE     H F SGD  +   E++   ++E+ + + + G                 ++
Sbjct: 574 CSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISKLGYVPEEQNFMLPDVDENEEK 633

Query: 573 TSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
             + H E+LA+A+GL++T EKT ++IV + RIC DCHS +K+ + +  REIVIRD  RFH
Sbjct: 634 IRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHSVIKLIAMITKREIVIRDASRFH 693

Query: 633 RFQGGQCSCRDYW 645
            F+ G CSC DYW
Sbjct: 694 HFRDGSCSCGDYW 706


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 186/549 (33%), Positives = 274/549 (49%), Gaps = 42/549 (7%)

Query: 129 YLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           Y++T  + + +KC  +     LF  +   D++S+N +IS ++  G     +    ++   
Sbjct: 240 YVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVS 299

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G      TMV LI   +    L +   +  F  +S   +  S+   L  +Y +  +I  A
Sbjct: 300 GQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLA 359

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
           ++L    E  E  V  W  ++SGY +S   + A  LF EM+        + I+ +L+   
Sbjct: 360 RQLFD--ESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILS--- 414

Query: 308 EFKYKSCASIGALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISE 352
                +CA +GAL  G  VH  IK   +          ID      NI  A  LF   SE
Sbjct: 415 -----ACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSE 469

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
           KN   W ++I  Y + G+  +A+ LF EM   G +P  VTF+++L ACSH GLV EG + 
Sbjct: 470 KNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEI 529

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
                  Y I+P  +HY CMVD+LGRAG LE++  FI  MP+ P  ++W +LL AC  H+
Sbjct: 530 FHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHK 589

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           +  LA  A + L E DP N G +VLL+NIY+        + +R  ++   L K  G +LI
Sbjct: 590 DTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLI 649

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ---------------- 576
           E  G  H F  GD  +  +  IY  L E+   +++ G Q  ++                 
Sbjct: 650 EVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNV 709

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H E+LA+AFGLI+T   T IRI+ NLR+C DCH+  K  S++  R IV+RD  RFH F+ 
Sbjct: 710 HSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKD 769

Query: 637 GQCSCRDYW 645
           G CSC DYW
Sbjct: 770 GICSCGDYW 778



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 155/309 (50%), Gaps = 12/309 (3%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FDK+P+RD + WNTMI+       Y + + +   M A+GV  D  T+ +++ A  +++
Sbjct: 159 KVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQ 218

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           ++++G  +     +        +L  L+ ++ KC  +  A+ L G   I + D+V +  L
Sbjct: 219 EVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGM--IRKPDLVSYNAL 276

Query: 268 VSGYVKSNERDEARRLFDE-MVERNLISWTLMISGMLNQDAEFKY---KSCASIGALYHG 323
           +SG+  + E + A + F E +V    +S + M+ G++   + F +     C     +  G
Sbjct: 277 ISGFSCNGETECAVKYFRELLVSGQRVSSSTMV-GLIPVSSPFGHLHLACCIQGFCVKSG 335

Query: 324 IWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
             +   +     +I    + I+LA  LF E SEK V  W ++I+ YA +G  + AI LF 
Sbjct: 336 TILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQ 395

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
           EM  T   P+ VT  ++LSAC+  G +  G   + +  +  N++  +     ++D+  + 
Sbjct: 396 EMMTTEFTPNPVTITSILSACAQLGALSFGKS-VHQLIKSKNLEQNIYVSTALIDMYAKC 454

Query: 440 GHLEESANF 448
           G++ E++  
Sbjct: 455 GNISEASQL 463


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 298/540 (55%), Gaps = 44/540 (8%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG L    ++F  + ++ V SWN +I  Y+     R  L    +M + G+ PD  T+ S
Sbjct: 440 KCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCS 499

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           L+SA ++++ L++GK +H  +  + ++    +   L+ +Y  CG++  A  L    E  +
Sbjct: 500 LLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAME--D 557

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
             +V W T+V+GY+++   + A  LF +MV   +    + +  +        + +C+ + 
Sbjct: 558 KTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSV--------FGACSLLP 609

Query: 319 ALYHGIWVHVYIKKNQISIDNIELA----------------YDLFSEISEKNVYLWTSVI 362
           +L  G   H Y  K  +  DN  +A                + +F+ + E++V  W +++
Sbjct: 610 SLRLGREAHGYALKCLLE-DNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMV 668

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
             Y + G A++AI LF EM+ TG  PD++TF+ +L+AC+H GLV EG  +L +   ++ +
Sbjct: 669 MGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGM 728

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFIT-SMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            P ++HY C++D+L RAG L+E+    T  M   P V IW+ LL +CR H+N+++ E   
Sbjct: 729 NPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIA 788

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
             L  ++P     +VLL+N+YA +G+ D++ ++R ++++M L+K  G S IE  G V  F
Sbjct: 789 AKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSF 848

Query: 542 TSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE--TSLQ--------------HRERLAVAF 585
            +G+      EEI  + + +E  + + G +   +S+Q              H E+LA+ +
Sbjct: 849 VAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITY 908

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GLI TSE TT+R+  NLRIC DCH+  K+ S+V  REIV+RDN RFH F+ G CSC DYW
Sbjct: 909 GLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 110/530 (20%), Positives = 215/530 (40%), Gaps = 92/530 (17%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P +     V ++C+ + E +    +H  ++ T L+ D  +S  +  F    G +  A ++
Sbjct: 182 PDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRV 241

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVF------------------------------- 124
            +   E  +  WNS+I     NG  +E F                               
Sbjct: 242 FKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCAR 301

Query: 125 -------------AIYLYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTM 164
                        A+ L L    V+ N       KCG + +   +F    N++V+SWNTM
Sbjct: 302 DREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTM 361

Query: 165 ISCYTSMGMYREGLGLLSKMGAEG--VSPDEVTMVSLISARTKLRDLEMGKNLHLF-LEE 221
           +  +++ G   +   LL +M A G  +  DEVT+++ +    +   L   K LH + L++
Sbjct: 362 VGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQ 421

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
             +  +  + N  V  Y KCG +  A ++     I    V  W  L+ GY +S++   + 
Sbjct: 422 EFVHNNELVANAFVASYAKCGSLSYAHRVF--CSIRSKTVNSWNALIGGYSQSSDPRLSL 479

Query: 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-- 339
             + +M    L+     +  +L+        +C+ I +L  G  VH  I +N++  D+  
Sbjct: 480 DAYFQMKSSGLLPDLFTVCSLLS--------ACSQIKSLKLGKEVHGLIIRNRLERDSFV 531

Query: 340 -------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
                        +  A+ LF  + +K +  W +++  Y   G  ++A+ LF +M   G 
Sbjct: 532 YISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGV 591

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH---YGC-MVDLLGRAGHL 442
           +P +++ +++  ACS    +      L +++  Y +K  ++      C ++D+  + G +
Sbjct: 592 QPCEISMMSVFGACSLLPSLR-----LGREAHGYALKCLLEDNAFIACSVIDMYAKNGSV 646

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
            ES      +     V+ W++++     H   K A   F+ +  T    D
Sbjct: 647 MESFKVFNGLK-ERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPD 695



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 130 LVTRTVLL-NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE- 187
           L TR + + + CG   +   +FD L  +++  WN +IS Y+   +Y   L +  KM  E 
Sbjct: 119 LCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITES 178

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           G+ PD  T   ++ A   + ++++G  +H  + ++ +     + N LV  Y   G + +A
Sbjct: 179 GLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDA 238

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLNQD 306
            ++     + E ++V W +++  +  +   +E   L  +M+E+ + I++T  ++ +    
Sbjct: 239 LRVFKI--MPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVL 296

Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------IELAYDLFSEISEKNV 355
                     +G   HG+ + + + K ++ ++N           I  A  +F   + KNV
Sbjct: 297 PVCARDREIGVGKGVHGLAMKLSLDK-EVVVNNALMDMYSKCGCINDAQVIFKLNNNKNV 355

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGT--KPDQVTFIALLSAC 400
             W +++  ++ AG   K  DL  +M   G   + D+VT +  +  C
Sbjct: 356 VSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 114/289 (39%), Gaps = 53/289 (18%)

Query: 33  KFANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
           K + + P    V  +  +CS I   +    +H  +I   L RD  +   +    +  G+L
Sbjct: 486 KSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGEL 545

Query: 90  GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV-------------- 135
             A  +    ++  +  WN+++   L NG+P+   +++  +V   V              
Sbjct: 546 STAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGAC 605

Query: 136 ---------------------------------LLNKCGKLKEVCQLFDKLPNRDVISWN 162
                                            +  K G + E  ++F+ L  R V SWN
Sbjct: 606 SLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWN 665

Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
            M+  Y   G  +E + L  +M   G  PDE+T + +++A      +  G   +L   ++
Sbjct: 666 AMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLT-YLDQMKT 724

Query: 223 TMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
              ++ +L +Y  ++DM  + GK+ EA K+      +E  V +W  L+S
Sbjct: 725 LFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLS 773



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 43/185 (23%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-------------------- 299
           D VL T +++ Y      D++R +FD + ++NL  W  +I                    
Sbjct: 116 DDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMI 175

Query: 300 --SGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISID---------------NI 340
             SG+L  +  F    K+CA +  +  G+ VH  + K ++  D               ++
Sbjct: 176 TESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSV 235

Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM----EETGTKPDQVTFIAL 396
             A  +F  + E+N+  W S+I  ++  G +++   L  +M    +E    PD  T   +
Sbjct: 236 SDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATV 295

Query: 397 LSACS 401
           L  C+
Sbjct: 296 LPVCA 300


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 189/539 (35%), Positives = 270/539 (50%), Gaps = 89/539 (16%)

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N+MI  Y  +  +   L + + M    + PD  T  +++ A  +L D  +GK +H     
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIH----- 112

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
                       ++ M F C                  DV   T LV  Y       +A 
Sbjct: 113 ----------GIVIQMGFIC------------------DVYTSTALVHLYCTCLSISDAS 144

Query: 282 RLFDEMVERNLISWTLMISG----------------MLNQDAEFKYKS-------CASIG 318
           +LFDEM ERN ++W  +I+G                ML   A+   ++       C+ +G
Sbjct: 145 QLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLG 204

Query: 319 ALYHGIWVHVYIKKNQISID------------NIELAYDL---FSEISEKNVYLWTSVIA 363
           A   G W+H +I  N++ ++                 Y++   F EI EKNVY W  +I+
Sbjct: 205 AFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLIS 264

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-YDFLSKKSRVYNI 422
            YAM G    A+  F  M     KPD+VTF+ +L AC H GLV EG + F+S K + + +
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ-FGL 323

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +P+++HYGCMVDLLGRAG LEE+   I SM I PD  IW +LL ACR H N KL E+  K
Sbjct: 324 QPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIK 383

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L E +P N   +VLL+NIY++  R  ++ ++R  +   G++K  G S IE    V++F 
Sbjct: 384 RLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFV 443

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFG 586
           + +   P  E IY  L+ +   L++ G                 + + + H E+LA+AFG
Sbjct: 444 ASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFG 503

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           L+++    T+RIV NLRIC DCH F KV S VY R IV+RD  RFH F  G CSCRDYW
Sbjct: 504 LLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 125/268 (46%), Gaps = 35/268 (13%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           C  + +  QLFD++P R+ ++WN +I+ YT    + + +     M A+G  P E T+V +
Sbjct: 137 CLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVV 196

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +SA + L     GK +H F+  + ++++  +   L+DMY KCG + E +K+    EI E 
Sbjct: 197 LSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFE--EIREK 254

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           +V  W  L+SGY  + + D A + F  M+  N     +   G+L         +C   G 
Sbjct: 255 NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLC--------ACCHQGL 306

Query: 320 LYHGIWVHVYIKKN---QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           +  G W  + +K+    Q  I++     DL                     AG  ++A++
Sbjct: 307 VTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGR------------------AGLLEEALE 348

Query: 377 LFLEMEETGTKPDQVTFIALLSACS-HG 403
           L   M     +PD + + ALL AC  HG
Sbjct: 349 LIQSM---SIEPDPIIWRALLCACRVHG 373



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + EV ++F+++  ++V +WN +IS Y   G     L   S+M  E   PDEVT + 
Sbjct: 237 KCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLG 296

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           ++ A      +  G+   + +++    +   + +Y  +VD+  + G + EA +L+    I
Sbjct: 297 VLCACCHQGLVTEGRWQFMSMKQQ-FGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 257 DEVDVVLWTTLVSG 270
            E D ++W  L+  
Sbjct: 356 -EPDPIIWRALLCA 368


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 168/470 (35%), Positives = 253/470 (53%), Gaps = 55/470 (11%)

Query: 231 LNYLVDMYFKCGKIGEAQKLLGR-YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
            N L+  Y   G+   A +L G      ++DVV WTT+V G  +    D+AR+LFD M E
Sbjct: 130 FNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPE 189

Query: 290 RNLISWTLMISGMLNQD-----------------------AEFKYKSCASIGALYHGIWV 326
           RNLISW  MISG +                          A     +C   G L  G  V
Sbjct: 190 RNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREV 249

Query: 327 HVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H +++++ I++D               ++E A+ +F  +  K +  W  +I   A+ G  
Sbjct: 250 HRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRC 309

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
           + AI+LF EME     PD VT + +L+AC+H G+V +G+++ +   + Y I+PKM+HYGC
Sbjct: 310 KDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGC 369

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           MVDL GRAG L+E+   I  MP+ PD+ +  +L  AC+ H+++ L E     + E DP N
Sbjct: 370 MVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQN 429

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
            G +VLLAN+ A AG+  D++++R  + +  + K+ G S+IE  G V +F  G + +   
Sbjct: 430 SGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQE 489

Query: 552 EEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTT 595
           +EI+  + ++   ++ +G                +E  LQ H E+LA+AFGL+ T    T
Sbjct: 490 KEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGDT 549

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +RI  NLR+C DCH   K  S+V+ REIV+RD  RFH F+ G CSCRDYW
Sbjct: 550 VRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 3/115 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG ++E   +F  LP + + SWN MI      G  ++ + L  +M  E V+PD+VT+V+
Sbjct: 274 KCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVN 333

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLL 251
           +++A      +  G N   ++ +    I   + +Y  +VD++ + G + EA+K++
Sbjct: 334 VLTACAHTGMVSDGHNYFNYIVQR-YGIEPKMEHYGCMVDLFGRAGLLDEAKKVI 387


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 199/669 (29%), Positives = 335/669 (50%), Gaps = 110/669 (16%)

Query: 71  RDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL 130
           + PQ+S +   F   T DL      +    +   K+ + I+ +Q  N +P     I L  
Sbjct: 25  QKPQLSPK---FTALTEDLCNKILDVNPDAKTLKKLHSKILIDQ--NLHPNPSLGIKLMR 79

Query: 131 VTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
                    CG+      +FD++ +++V+ +N MI  Y + G+Y++ L +   M  +G  
Sbjct: 80  AYAA-----CGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFY 134

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD  T   ++ A +   +L +G  +H  + +  + ++  + N LV MY KC  +  A+++
Sbjct: 135 PDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRV 194

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----------------------- 287
           L   E+   D+V W ++V+GY ++   ++A +L  EM                       
Sbjct: 195 LD--EMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTS 252

Query: 288 --------------VERNLISWTLMIS-----GMLNQDAEFKYK---------------- 312
                          E++LISW +MI+      M N+  +   +                
Sbjct: 253 CDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSV 312

Query: 313 --SCASIGALYHGIWVHVYIKKNQIS----IDN-----------IELAYDLFSEISEKNV 355
             +C  + A   G  +H Y+++ ++     ++N           ++ A  +F ++  ++V
Sbjct: 313 LPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDV 372

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDF 412
             WTS+I+AY M+G  + A+ LF +M ++G  PD + F+++L+ACSH GLVDEG   ++ 
Sbjct: 373 VSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNL 432

Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
           +++    Y I P ++HY CMVDLLGRAG ++E+ +    MP+ P+  +W SLL ACR + 
Sbjct: 433 MAE----YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYS 488

Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
           ++ +A  A  HL +  P   G +VLL+NIYAKAGR  D+  +R  +   G+KK  G S +
Sbjct: 489 SMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNV 548

Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ--------------- 576
           E    V+ F +GD  +  S+EIY  L  +   +++ G + ET                  
Sbjct: 549 EINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAV 608

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
           H E+LA+ F +++T   +TIRI  N+R+CGDCH   K+ S++  REI+IRD  RFH F+ 
Sbjct: 609 HSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRD 668

Query: 637 GQCSCRDYW 645
           G CSC DYW
Sbjct: 669 GVCSCGDYW 677


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 200/671 (29%), Positives = 331/671 (49%), Gaps = 101/671 (15%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
           ++H+ ++   L +   +S  +    +  G++  A+ +  + +   +  WNS+I     NG
Sbjct: 219 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 278

Query: 119 YPQEVFAIYLYLVTRTVLLNK---------CGKLKEV-------CQL------FDK---- 152
              E   ++  +    V L++         C  LKE+       C +      FD+    
Sbjct: 279 LDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRT 338

Query: 153 ------------------------LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
                                   L N  V+SW  MIS +       E +GL S+M  +G
Sbjct: 339 ALMVAYSKCMAMLDALRLFKETGFLGN--VVSWTAMISGFLQNDGKEEAVGLFSEMKRKG 396

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           V P+E T   +++A   +   E    +H  + ++  + S ++   L+D Y K GK+ EA 
Sbjct: 397 VRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAA 452

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
           K+     ID  D+V W+ +++GY ++ E + A ++F E+ +  +       S +LN  A 
Sbjct: 453 KVFS--GIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAA 510

Query: 309 FKYKSCASIG--ALYHGIWVH---------------VYIKKNQISIDNIELAYDLFSEIS 351
               + AS+G    +HG  +                +Y KK      +IE A ++F    
Sbjct: 511 ----TTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG-----HIESAEEVFKRQR 561

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           EK++  W S+I+ YA  G A KA+D+F EM++   K D VTFI + +AC+H GLV+EG  
Sbjct: 562 EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEK 621

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           +     R   I P  +H  CMVDL  RAG LE++   I +MP     +IW ++L ACR H
Sbjct: 622 YFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVH 681

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           +  +L   A + +    P +  A+VLL+N+YA++G   + +++R  + +  +KK+ GYS 
Sbjct: 682 KKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSW 741

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETS---------------L 575
           IE     + F +GD  +P  ++IY+ L ++   L+  G + +TS                
Sbjct: 742 IEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLA 801

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
           QH ERLA+AFGLI+T + + + I+ NLR+CGDCH  +K+ +++  REIV+RD+ RFH F 
Sbjct: 802 QHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFS 861

Query: 636 G-GQCSCRDYW 645
             G CSC D+W
Sbjct: 862 SDGVCSCGDFW 872



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 189/400 (47%), Gaps = 41/400 (10%)

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
           +++   +++N L    P     I LYL        KCG +++   LFDK   + V++WN+
Sbjct: 218 LQVHTVVVKNGLDKTIPVSNSLINLYL--------KCGNVRKARILFDKTEVKSVVTWNS 269

Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
           MIS Y + G+  E LG+   M    V   E +  S+I     L++L   + LH  + +  
Sbjct: 270 MISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYG 329

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                ++   L+  Y KC  + +A +L         +VV WT ++SG+++++ ++EA  L
Sbjct: 330 FVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLG-NVVSWTAMISGFLQNDGKEEAVGL 388

Query: 284 FDEM----VERNLISWTLMISGML--------NQDAEFKYKSCASIGALYHGIWVHVYIK 331
           F EM    V  N  +++++++ +          Q  +  Y+  +++G       +  Y+K
Sbjct: 389 FSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTAL----LDAYVK 444

Query: 332 KNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391
                +  ++ A  +FS I  K++  W++++A YA AG  + AI +F E+ + G KP++ 
Sbjct: 445 -----LGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEF 499

Query: 392 TFIALLSACSH-GGLVDEGYDFLSKKSRVYNIKPKMQHYGC----MVDLLGRAGHLEESA 446
           TF ++L+ C+     + +G  F       + IK ++    C    ++ +  + GH+ ESA
Sbjct: 500 TFSSILNVCAATTASMGQGKQFHG-----FAIKSRLDSSLCVSSALLTMYAKKGHI-ESA 553

Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
             +       D+  W+S++     H     A   FK + +
Sbjct: 554 EEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKK 593



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 136/350 (38%), Gaps = 79/350 (22%)

Query: 91  YAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLF 150
           + + + R       K+   I  N+L N  P   F IY +    +       +L     LF
Sbjct: 3   FTRTVWRPQSLENFKLKFCIYANELGNLKPN--FRIYCFGAASS------SRLYYAHNLF 54

Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
           DK P+RD  S+ +++  ++  G  +E   L   +   G+  D     S++     L D  
Sbjct: 55  DKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDEL 114

Query: 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
            G+ LH                       +C K G              DV + T+LV  
Sbjct: 115 FGRQLHC----------------------QCIKFGFLD-----------DVSVGTSLVDT 141

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISG--------------MLNQDAEFKYKS--- 313
           Y+K +   + R +FDEM ERN+++WT +ISG              M  QD   +  S   
Sbjct: 142 YMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTF 201

Query: 314 CASIGALY------HGIWVHVYIKKNQ---------------ISIDNIELAYDLFSEISE 352
            A++G L        G+ VH  + KN                +   N+  A  LF +   
Sbjct: 202 AAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEV 261

Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           K+V  W S+I+ YA  G   +A+ +F  M     +  + +F +++  C++
Sbjct: 262 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCAN 311



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 7/153 (4%)

Query: 264 WTTLVSGYVKSNERDEARRLFDEM------VERNLISWTLMISGMLNQDAEFKYKSCASI 317
           +T+L+ G+ +     EA RLF  +      ++ ++ S  L +S  L  +   +   C  I
Sbjct: 65  YTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCI 124

Query: 318 G-ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
                  + V   +    +   N +   ++F E+ E+NV  WT++I+ YA     ++ + 
Sbjct: 125 KFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLT 184

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           LF+ M++ GT+P+  TF A L   +  G+   G
Sbjct: 185 LFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRG 217


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 176/526 (33%), Positives = 278/526 (52%), Gaps = 47/526 (8%)

Query: 157 DVISWNTMISCYTSMGMYR---EGLGLLSKMGAEGVSPDEVTMVSLISARTKLR-DLEMG 212
           D    NT+I  + +  ++            M    V P++ T   L+ A   L    ++G
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMY--FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
              H    +        + N L+ MY  F  G +G+A+ +  R  + +   V W+ ++ G
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDR--MPKESAVTWSAMIGG 204

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
           YV+     +A  LF EM    + +  + + G+L         +   +GAL    WV  ++
Sbjct: 205 YVRGGLSSDAVDLFREMQANGVQADEVTVIGVL--------AAATDLGALELARWVRRFV 256

Query: 331 KKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
           ++  I          ID      +++ A  +F  + +++V  WTSVI A AM G  ++A+
Sbjct: 257 EREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAV 316

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
            +F EM+  G  PD V FI +L+ACSH G+VDEG  +       Y I+PK++HYGCMVD+
Sbjct: 317 RVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDM 376

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
            GRAG +E +  F+ +MPI P+  IW SL+ ACR H  ++L E   + L    P ++  +
Sbjct: 377 FGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANY 436

Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
           ++L+N++A   R  + S IR ++   G+KK  G S++E  G VH+F +GD  +P  ++IY
Sbjct: 437 IMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIY 496

Query: 556 LMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIV 599
            M+ E+   L++ G                +E +LQ H E+LA+AF L+ T   T +R+V
Sbjct: 497 RMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVV 556

Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            NLR+C DCH+ +K  SQVY REIV+RD  RFHRF+ G CSC+D+W
Sbjct: 557 KNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 131/288 (45%), Gaps = 36/288 (12%)

Query: 124 FAIYLYLVTRTVLLNKC---GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           FA   Y+    + +  C   G L +   +FD++P    ++W+ MI  Y   G+  + + L
Sbjct: 158 FATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDL 217

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             +M A GV  DEVT++ +++A T L  LE+ + +  F+E   +  S +L N L+D   K
Sbjct: 218 FREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAK 277

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
           CG +  A  +     + +  VV WT+++          EA R+F+EM           ++
Sbjct: 278 CGDVDGAVAVF--EGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEM----------KVA 325

Query: 301 GMLNQDAEF--KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLW 358
           G+   D  F     +C+  G +  G              D +++ Y +     E  +  +
Sbjct: 326 GVPPDDVAFIGVLTACSHAGMVDEGCGY----------FDAMKVEYGI-----EPKIEHY 370

Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC-SHGGL 405
             ++  +  AG  ++A++    M     +P+ V + +L+SAC +HG L
Sbjct: 371 GCMVDMFGRAGMVERAMEFVRTMP---IQPNPVIWRSLVSACRAHGRL 415


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 180/547 (32%), Positives = 288/547 (52%), Gaps = 51/547 (9%)

Query: 136 LLNKCGKLKEVCQLFDKL--PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           +  KCG + E   +FD++   N DVISWN +I  YT  G+ +E L L   M  EGV  ++
Sbjct: 68  MYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQ 127

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           VT+++ I A   L   E G+ +H    +  ++    +   LV+M+ KC  +  A+ +   
Sbjct: 128 VTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFD- 186

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFD----EMVERNLISWTLMISGMLNQDAEF 309
             +   ++V W  +V+ Y ++ +  +A ++F     E V+ + +++  +I          
Sbjct: 187 -SLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIID--------- 236

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKN 354
              +CA++ A   G  VH  I  + I +D                ++ A  +F  + +KN
Sbjct: 237 ---ACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKN 293

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              W++++AAYA  G+  +AI+L+ EM + G + + +TF+ LL ACSH G   +G D+  
Sbjct: 294 TVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFV 353

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
              R + + P  +HY  ++DLLGR+G L+ S + I SMP  PD S W +LL ACR H +V
Sbjct: 354 SMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDV 413

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
                  + + E DP + G ++LL+N+Y+  GR+D+  R R  +R  G+ KQ G S IE 
Sbjct: 414 DRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLSSIEV 473

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------QETSLQ----HR 578
              VH+F +    +P    I+  +  ++  +++ G             +E   Q    H 
Sbjct: 474 KDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEEKEQLLWYHS 533

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           ERLA+AFGLIST   T + IV NLR+C DCH+ +K  S+V  R+IV+RD  RFH F+ G 
Sbjct: 534 ERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHFENGA 593

Query: 639 CSCRDYW 645
           CSC DYW
Sbjct: 594 CSCGDYW 600



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 25/288 (8%)

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T V L+      + L  GK +H  L +        + N L++MY KCG I EA+ +  + 
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
           +    DV+ W  ++  Y ++    EA  LF  M    +I+  + +   ++        +C
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAID--------AC 137

Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
           AS+ +   G  VH      ++  D               N++ A  +F  +  KN+  W 
Sbjct: 138 ASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWN 197

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
           +++A Y+     +KAI +F  M+  G +PD VTF+ ++ AC+      EG   +      
Sbjct: 198 NMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGR-MVHDDITA 256

Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
             I   +     ++   G+ G L+ +     S+     V+ WS++L A
Sbjct: 257 SGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVT-WSAILAA 303


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 290/537 (54%), Gaps = 71/537 (13%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMG-------MYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           QLFD++   +++ +NTM   Y  +         +R  L L+SK+ A              
Sbjct: 82  QLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRLVSKVKA-------------- 127

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
                   L  GK LH F  +  +  +  ++  L++MY  CG I  ++++  +  IDE  
Sbjct: 128 --------LAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDK--IDEPC 177

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
           VV +  ++    ++N  +EA  LF E+ E  L    + +  +L+        SCA +G+L
Sbjct: 178 VVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLS--------SCALLGSL 229

Query: 321 YHGIWVHVYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAY 365
             G W+H Y+KK         N   ID      +++ A ++F ++ +++   W+++I AY
Sbjct: 230 DLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAY 289

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425
           A  G   +AI +  EM++   +PD++TF+ +L ACSH GLV+EG+++    +  Y I P 
Sbjct: 290 ATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPS 349

Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
           ++HYGCMVDLLGRAG L+E+  FI  +PI P   +W +LL AC  H NV++ +   + + 
Sbjct: 350 IKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIF 409

Query: 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
           E D  + G +V+ +N+ A+ G+ DD++ +R  + D G  K  G S IE    VH+F +G+
Sbjct: 410 ELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGE 469

Query: 546 IFNPHSEEIYLMLNEIEMTLQQQG-LQETSL----------------QHRERLAVAFGLI 588
             +  S  ++  L+E+   L+  G + +TSL                 H E+LA+ FGL+
Sbjct: 470 GVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLL 529

Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +T   TTIR+V NLR+CGDCH+  K  S ++ R+I++RD  RFH F+ G+CSC DYW
Sbjct: 530 NTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 161/398 (40%), Gaps = 71/398 (17%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT---GDLGYAQQIIRQGDEPEIKIW 107
           C+++ E ++I ++ I TN   +  + T+   F         + +A Q+  Q  +P I ++
Sbjct: 36  CTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLF 95

Query: 108 NSIIE-------------------------NQLINGYPQEVFAIYL------YLVTRTV- 135
           N++                             L  G     FA+ L      Y+V   + 
Sbjct: 96  NTMARGYARLNDPLRMITHFRRCLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLIN 155

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +   CG +    ++FDK+    V+++N +I          E L L  ++   G+ P +VT
Sbjct: 156 MYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVT 215

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           M+ ++S+   L  L++G+ +H ++++        +   L+DMY KCG + +A  +    +
Sbjct: 216 MLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVF--RD 273

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + + D   W+ ++  Y    +  +A  + +EM +  +    +   G+L         +C+
Sbjct: 274 MPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGIL--------YACS 325

Query: 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA----MAGHA 371
             G                     +E  ++ F  ++  N Y     I  Y     + G A
Sbjct: 326 HNGL--------------------VEEGFEYFHGMT--NEYGIVPSIKHYGCMVDLLGRA 363

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
            +  + +  ++E   KP  + +  LLSACS  G V+ G
Sbjct: 364 GRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMG 401



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 120/269 (44%), Gaps = 30/269 (11%)

Query: 231 LNYLVDMYFKCGKIGEAQKLLG-----RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
           L +L+ +  KC  + E +++        Y+ +   +  +    +        + A +LFD
Sbjct: 26  LPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFD 85

Query: 286 EMVERNLISWTLMISGMLNQDAEFK----YKSC----ASIGALYHGIWVHVYIKKNQISI 337
           ++ + N++ +  M  G    +   +    ++ C    + + AL  G  +H +  K  +S 
Sbjct: 86  QITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRLVSKVKALAEGKQLHCFAVKLGVSD 145

Query: 338 D---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
           +               +I+ +  +F +I E  V  + ++I + A    A +A+ LF E++
Sbjct: 146 NMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQ 205

Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
           E G KP  VT + +LS+C+  G +D G  ++ +  + Y     ++    ++D+  + G L
Sbjct: 206 EIGLKPTDVTMLVVLSSCALLGSLDLG-RWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSL 264

Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCH 471
           +++ N    MP   D   WS+++ A   H
Sbjct: 265 DDAVNVFRDMP-KRDTQAWSAIIVAYATH 292



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 115/285 (40%), Gaps = 49/285 (17%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
           ++ E +++H   +   +  +  +   +       GD+  ++++  + DEP +  +N+II 
Sbjct: 127 ALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIM 186

Query: 113 NQLINGYPQEVFAIYLYL---------VTRTVLLN------------------------- 138
           +   N    E  A++  L         VT  V+L+                         
Sbjct: 187 SLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDR 246

Query: 139 -------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
                        KCG L +   +F  +P RD  +W+ +I  Y + G   + + +L++M 
Sbjct: 247 YVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMK 306

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
            E V PDE+T + ++ A +    +E G +  H    E  +  S      +VD+  + G++
Sbjct: 307 KEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRL 366

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
            EA K +    I     +LW TL+S        +  +R+ + + E
Sbjct: 367 DEAYKFIDELPIKPTP-ILWRTLLSACSTHGNVEMGKRVIERIFE 410


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 168/443 (37%), Positives = 245/443 (55%), Gaps = 56/443 (12%)

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DA-----EF 309
           +DVV WTT+V G +K    D+AR LFD M ERNL+SW  M+SG +      DA     E 
Sbjct: 163 LDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEM 222

Query: 310 KYKS--------------CASIGALYHGIWVHVYIKKNQISIDN---------------I 340
           + +               C   GAL  G  VH +++++ I +D                +
Sbjct: 223 RARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCV 282

Query: 341 ELAYDLFS--EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           E A+ +F    ++ K +  W  +I  +A+ G  + A+ LF  ME  G  PD VT + +L+
Sbjct: 283 EEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLT 342

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV 458
           AC+H G++ EG  + +   + Y I+PKM+HYGCMVDL GRAG LEE+   I  MP+ PDV
Sbjct: 343 ACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDV 402

Query: 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518
            +  +L  A + H +V L E     + E DP N G +VLLAN+ A AGR +D++R+R  +
Sbjct: 403 GVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLM 462

Query: 519 RDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------- 570
            +  + K+ G S+IE  G V +F  G + +P +EE+Y M  ++   ++ +G         
Sbjct: 463 DERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTRDVL 522

Query: 571 -------QETS-LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNRE 622
                  +ET  L H E+LA+AFGL+ T    T+RI  NLR+C DCH   K  S+V+ R+
Sbjct: 523 HAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQ 582

Query: 623 IVIRDNGRFHRFQGGQCSCRDYW 645
           IV+RD  RFH F+ GQCSC+DYW
Sbjct: 583 IVVRDRNRFHHFKDGQCSCKDYW 605



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 131/312 (41%), Gaps = 30/312 (9%)

Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
           L K G   +   LFD +P R+++SWN M+S Y     + + L +  +M A GV  +    
Sbjct: 175 LLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVA 234

Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            + + A T    L  G+ +H ++E+S +++   L   +VDMY KCG + EA ++     +
Sbjct: 235 ATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPL 294

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
               +  W  ++ G+      ++A +LF  M    +    + +  +L         +CA 
Sbjct: 295 AAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLT--------ACAH 346

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
            G L  G     Y+ +           Y +     E  +  +  ++  Y  AG  ++A  
Sbjct: 347 AGMLSEGRHYFNYVPQR----------YGI-----EPKMEHYGCMVDLYGRAGRLEEAKK 391

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ-HYGCMVDL 435
           +  +M     +PD     AL  A    G VD G    +   RV  + P+    Y  + +L
Sbjct: 392 VIQDMP---MEPDVGVLGALFGASKIHGDVDLGE---AIGWRVIELDPQNSGRYVLLANL 445

Query: 436 LGRAGHLEESAN 447
           L  AG  E+ A 
Sbjct: 446 LATAGRWEDVAR 457


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 193/642 (30%), Positives = 313/642 (48%), Gaps = 66/642 (10%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P +  +  V R C+ + + E   R+H  ++   +  D  +   V +     G    A+++
Sbjct: 110 PNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRV 169

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
                E +   WN  I   +                       + G +    QLFD+ P 
Sbjct: 170 FGAMAERDAVSWNIAIGACI-----------------------QSGDILGSMQLFDESPL 206

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RD  SWNT+IS     G   + L  L +M   GV  +  T  +       L   ++G+ L
Sbjct: 207 RDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQL 266

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV-VLWTTLVSGYVKS 274
           H  +  + ++    + + L+DMY KCG +  A  +   +     D+   W+T+V+GYV++
Sbjct: 267 HGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQN 326

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
              +EA  LF  M+   + +    ++ +          +CA++G +  G  VH  ++K  
Sbjct: 327 GREEEALDLFRRMLREGVAADRFTLTSVA--------AACANVGMVEQGRQVHGCVEKLW 378

Query: 335 ISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
             +D               N+E A  +F     KN+ +WTS++ +YA  G  + AI+LF 
Sbjct: 379 YKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFE 438

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
            M      P+++T + +LSACSH GLV EG  +  +    Y I P ++HY C+VDL GR+
Sbjct: 439 RMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRS 498

Query: 440 GHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499
           G L+++ NFI    I  +  +W +LL ACR HQ+ + A+ A + L + +  + G++V+L+
Sbjct: 499 GLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLS 558

Query: 500 NIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN 559
           NIYA   +  D   +R+ +++  ++KQ G S I     VH F +GD  +P S EIY  L 
Sbjct: 559 NIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLE 618

Query: 560 EIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLR 603
           ++   L++ G                +ET+L+ H E+LA+AFG+IST   T +RI  NLR
Sbjct: 619 KLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLR 678

Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +C DCH  +K  S    REIV+RD  RFH F+   CSC D+W
Sbjct: 679 VCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 182/408 (44%), Gaps = 53/408 (12%)

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
           P E  ++  + V R    +  G       +FD+ P R    W   IS     G Y +G+ 
Sbjct: 45  PHERASVLRFWVRRRRFHDARG-------VFDERPTRTAPVWTLTISGCARRGRYADGMR 97

Query: 180 LLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
             ++M AEG  +P+   + +++     + D+E GK +H ++  + + +   L N ++DMY
Sbjct: 98  AFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMY 157

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
            KCG+   A+++ G   + E D V W   +   ++S +   + +LFDE   R+  SW  +
Sbjct: 158 AKCGQFERARRVFG--AMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTI 215

Query: 299 ISGMLNQ----DAEFKYKSCASIGALY-HGIWVHVYIKKNQISIDN-------------- 339
           ISG++      DA    +  A  G ++ H  +   ++    + + +              
Sbjct: 216 ISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAAL 275

Query: 340 -------------------IELA---YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
                              +E A   +D +S ++    + W++++A Y   G  ++A+DL
Sbjct: 276 EGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDL 335

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F  M   G   D+ T  ++ +AC++ G+V++G        +++  K        +VD+  
Sbjct: 336 FRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLW-YKLDAPLASAIVDMYA 394

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
           + G+LE+ A  I       ++++W+S+L +   H   ++A   F+ +T
Sbjct: 395 KCGNLED-ARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMT 441


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 189/539 (35%), Positives = 270/539 (50%), Gaps = 89/539 (16%)

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
           N+MI  Y  +  +   L + + M    + PD  T  +++ A  +L D  +GK +H     
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIH----- 112

Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
                       ++ M F C                  DV   T LV  Y       +A 
Sbjct: 113 ----------GIVIQMGFIC------------------DVYTSTALVHLYCTCLSISDAS 144

Query: 282 RLFDEMVERNLISWTLMISG----------------MLNQDAEFKYKS-------CASIG 318
           +LFDEM ERN ++W  +I+G                ML   A+   ++       C+ +G
Sbjct: 145 QLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLG 204

Query: 319 ALYHGIWVHVYIKKNQISID------------NIELAYDL---FSEISEKNVYLWTSVIA 363
           A   G W+H +I  N++ ++                 Y++   F EI EKNVY W  +I+
Sbjct: 205 AFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLIS 264

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-YDFLSKKSRVYNI 422
            YAM G    A+  F  M     KPD+VTF+ +L AC H GLV EG + F+S K + + +
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ-FGL 323

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +P+++HYGCMVDLLGRAG LEE+   I SM I PD  IW +LL ACR H N KL E+  K
Sbjct: 324 QPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIK 383

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            L E +P N   +VLL+NIY++  R  ++ ++R  +   G++K  G S IE    V++F 
Sbjct: 384 RLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFV 443

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFG 586
           + +   P  E IY  L+ +   L++ G                 + + + H E+LA+AFG
Sbjct: 444 ASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFG 503

Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           L+++    T+RIV NLRIC DCH F KV S VY R IV+RD  RFH F  G CSCRDYW
Sbjct: 504 LLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 125/268 (46%), Gaps = 35/268 (13%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           C  + +  QLFD++P R+ ++WN +I+ YT    + + +     M A+G  P E T+V +
Sbjct: 137 CLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVV 196

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +SA + L     GK +H F+  + ++++  +   L+DMY KCG + E +K+    EI E 
Sbjct: 197 LSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFE--EIREK 254

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           +V  W  L+SGY  + + D A + F  M+  N     +   G+L         +C   G 
Sbjct: 255 NVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLC--------ACCHQGL 306

Query: 320 LYHGIWVHVYIKKN---QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
           +  G W  + +K+    Q  I++     DL                     AG  ++A++
Sbjct: 307 VTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGR------------------AGLLEEALE 348

Query: 377 LFLEMEETGTKPDQVTFIALLSACS-HG 403
           L   M     +PD + + ALL AC  HG
Sbjct: 349 LIQSM---SIEPDPIIWRALLCACRVHG 373



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG + EV ++F+++  ++V +WN +IS Y   G     L   S+M  E   PDEVT + 
Sbjct: 237 KCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLG 296

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           ++ A      +  G+   + +++    +   + +Y  +VD+  + G + EA +L+    I
Sbjct: 297 VLCACCHQGLVTEGRWQFMSMKQQ-FGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSI 355

Query: 257 DEVDVVLWTTLVSG 270
            E D ++W  L+  
Sbjct: 356 -EPDPIIWRALLCA 368


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 183/531 (34%), Positives = 274/531 (51%), Gaps = 43/531 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +LFD++P R++ +WN  IS   + G  RE +    +       P+ +T  + ++A +   
Sbjct: 164 KLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWL 223

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L +G  LH  +  S      S+ N L+D Y KC +I  ++ +    E+   + V W +L
Sbjct: 224 HLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIF--TEMGTKNAVSWCSL 281

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           V+ YV+++E ++A  L+    +  + +   MIS +L+        +CA +  L  G  +H
Sbjct: 282 VAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLS--------ACAGMAGLELGRSIH 333

Query: 328 VYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            +  K  +                   IE +   F E+ EKN+    S+I  YA  G   
Sbjct: 334 AHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVD 393

Query: 373 KAIDLFLEMEE--TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
            A+ LF EM     G  P+ +TF++LLSACS  G V+ G          Y I+P  +HY 
Sbjct: 394 MALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYS 453

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           C+VD+LGRAG +E +  FI  MPI P +S+W +L  ACR H   +L   A ++L + DP 
Sbjct: 454 CIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPK 513

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
           + G HVLL+N +A AGR  + + +R +L+ +G+KK  GYS I     VH F + D  +  
Sbjct: 514 DSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHIL 573

Query: 551 SEEIYLML----NEIEMT------------LQQQGLQETSLQHRERLAVAFGLISTSEKT 594
           ++EI   L    NE+E              L+++        H E+LA+AFGL+S     
Sbjct: 574 NKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSV 633

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            IRI  NLRICGDCHSF K  S    REI++RDN RFHRF+ G CSC+DYW
Sbjct: 634 PIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 135/342 (39%), Gaps = 80/342 (23%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P R+V+SW ++IS     G +   L    +M  EGV P++ T      A   LR    GK
Sbjct: 69  PARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGK 128

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +H                    +  KCG+I              +DV +  +    Y K
Sbjct: 129 QIHA-------------------LAVKCGRI--------------LDVFVGCSAFDMYCK 155

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQ-------DAEFKYKS----------CAS 316
           +  RD+AR+LFDE+ ERNL +W   IS  +         +A  +++           CA 
Sbjct: 156 TRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAF 215

Query: 317 IGA------LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNV 355
           + A      L  G+ +H  + ++    D                I  +  +F+E+  KN 
Sbjct: 216 LNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNA 275

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W S++AAY      +KA  L+L   +   +       ++LSAC+    ++     L +
Sbjct: 276 VSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLE-----LGR 330

Query: 416 KSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMP 453
               + +K  ++        +VD+ G+ G +E+S      MP
Sbjct: 331 SIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP 372



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 101/260 (38%), Gaps = 41/260 (15%)

Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
           L NYL++MY K     E+ +L+ R      +VV WT+L+SG  ++     A   F EM  
Sbjct: 44  LANYLINMYSKLDH-PESARLVLRL-TPARNVVSWTSLISGLAQNGHFSTALVEFFEMRR 101

Query: 290 RNLISWTLMISGMLNQDAEFKYK-----------SCASIGALYHGIWVHVYIKKNQISID 338
             ++             A  +              C  I  ++ G        K ++  D
Sbjct: 102 EGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDD 161

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
               A  LF EI E+N+  W + I+     G  ++AI+ F+E       P+ +TF A L+
Sbjct: 162 ----ARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLN 217

Query: 399 ACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           ACS           HG ++  G+D              +     ++D  G+   +  S  
Sbjct: 218 ACSDWLHLNLGMQLHGLVLRSGFD------------TDVSVCNGLIDFYGKCKQIRSSEI 265

Query: 448 FITSMPIPPDVSIWSSLLRA 467
             T M     VS W SL+ A
Sbjct: 266 IFTEMGTKNAVS-WCSLVAA 284



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV--SPDE 193
           +  KCG +++  Q FD++P +++++ N++I  Y   G     L L  +M   G   +P+ 
Sbjct: 354 MYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNY 413

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLL 251
           +T VSL+SA ++   +E G  +   +  ST  I     +Y  +VDM  + G +  A + +
Sbjct: 414 MTFVSLLSACSRAGAVENGMKIFDSM-RSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFI 472

Query: 252 GRYEIDEVDVVLWTTL 267
            +  I    + +W  L
Sbjct: 473 KKMPIQPT-ISVWGAL 487


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 173/490 (35%), Positives = 279/490 (56%), Gaps = 48/490 (9%)

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK--IGEAQK 249
           DE   +   SA  ++ D  +  +LH  + +   + +  ++N ++D Y K G   +  A+K
Sbjct: 197 DEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARK 256

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA-- 307
           +   ++  E DVV W ++++ Y ++    EA  L+ +M         L + G +  +A  
Sbjct: 257 V---FDTMERDVVSWNSMIALYAQNGMSAEAIGLYSKM---------LNVGGGIKCNAVA 304

Query: 308 -EFKYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEIS 351
                 +CA  GA+  G  +H           VY+  + + +      +E+A   F +I 
Sbjct: 305 LSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK 364

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
           EKN+  W+++I  Y M G  Q+A+++F EM+ +G +P+ +TFI++L+ACSH GL+DEG  
Sbjct: 365 EKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRY 424

Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           + +   + + I+  ++HYGCMVDLLGRAG L+E+ + I  M + PD +IW +LL ACR H
Sbjct: 425 WYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIH 484

Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
           +NV+LAE + K L E D  N G +VLL+NIYA+A    D+ RIR+ ++   ++K  GYS 
Sbjct: 485 KNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSS 544

Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ 576
            E  G ++ F  GD  +P   EIY  L ++   +Q+ G                +E++L+
Sbjct: 545 FELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALR 604

Query: 577 -HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LAVAF L+++  ++ I I+ NLR+C DCH+ MK  +++  REI+IRD  RFH F+
Sbjct: 605 IHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFK 664

Query: 636 GGQCSCRDYW 645
            G CSCRDYW
Sbjct: 665 DGLCSCRDYW 674



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 31/255 (12%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GAEGVSPDEVTMVSLISARTK 205
           ++FD +  RDV+SWN+MI+ Y   GM  E +GL SKM     G+  + V + +++ A   
Sbjct: 256 KVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAH 314

Query: 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
              ++ GK +H  +    ++ +  +   +VDMY KCG++  A +   +  I E +++ W+
Sbjct: 315 AGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRK--IKEKNILSWS 372

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
            +++GY       EA  +F EM    L    +    +L         +C+  G L  G +
Sbjct: 373 AMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVL--------AACSHAGLLDEGRY 424

Query: 326 VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385
            +  +K+ +  I              E  V  +  ++     AG   +A  L  EM+   
Sbjct: 425 WYNAMKQ-EFGI--------------EAGVEHYGCMVDLLGRAGCLDEAYSLIKEMK--- 466

Query: 386 TKPDQVTFIALLSAC 400
            KPD   + ALLSAC
Sbjct: 467 VKPDAAIWGALLSAC 481



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 88/180 (48%), Gaps = 27/180 (15%)

Query: 93  QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152
            Q++R G E  + +  SI++                       + +KCG+++   + F K
Sbjct: 326 NQVVRMGLEENVYVGTSIVD-----------------------MYSKCGRVEMASRAFRK 362

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +  ++++SW+ MI+ Y   G  +E L + ++M   G+ P+ +T +S+++A +    L+ G
Sbjct: 363 IKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEG 422

Query: 213 KNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +  +  +++    I   + +Y  +VD+  + G + EA  L+   ++ + D  +W  L+S 
Sbjct: 423 RYWYNAMKQE-FGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV-KPDAAIWGALLSA 480


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 309/585 (52%), Gaps = 67/585 (11%)

Query: 94  QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
           QIIR G E +I     +  N LIN Y                  +KC  +    + F+++
Sbjct: 68  QIIRIGLEMDI-----LTSNMLINMY------------------SKCSLVDSARKKFNEM 104

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS-LISARTKLRDLEMG 212
           P + ++SWNT+I   T     RE L LL +M  EG   +E T+ S L +   K   LE  
Sbjct: 105 PVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECM 164

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           + LH F  ++ +  +  +   L+ +Y KC  I +A ++     + E + V W+++++GYV
Sbjct: 165 Q-LHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFE--SMPEKNAVTWSSMMAGYV 221

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH----- 327
           ++   +EA  +F             MIS  ++        +CA +  L  G  VH     
Sbjct: 222 QNGFHEEALLIFRNAQLMGFDQDPFMISSAVS--------ACAGLATLIEGKQVHAISHK 273

Query: 328 ------VYIKKNQISI----DNIELAYDLFSEISE-KNVYLWTSVIAAYAMAGHAQKAID 376
                 +Y+  + I +      I  AY +F  + E +++ LW ++I+ +A    A +A+ 
Sbjct: 274 SGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMI 333

Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
           LF +M++ G  PD VT++ +L+ACSH GL +EG  +     R +N+ P + HY CM+D+L
Sbjct: 334 LFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDIL 393

Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
           GRAG + ++ + I  MP     S+W SLL +C+ + N++ AE A K+L E +P N G H+
Sbjct: 394 GRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHI 453

Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
           LLANIYA   + D+++R R  LR+  ++K+ G S IE    +H FT G+  +P  ++IY 
Sbjct: 454 LLANIYAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYA 513

Query: 557 MLNEIEMTLQQ-----------QGLQETSLQ-----HRERLAVAFGLISTSEKTTIRIVN 600
            L+ + + L++             ++E   Q     H E+LA+ FGL+       IRI+ 
Sbjct: 514 KLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIK 573

Query: 601 NLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           NLRICGDCH+FMK+ S+  +REI++RD  RFH F+ G CSC ++W
Sbjct: 574 NLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/403 (20%), Positives = 157/403 (38%), Gaps = 41/403 (10%)

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR-------TKLRDLEMGKNLHLF 218
           +CY   G++   L ++S+   E    + V  +  +S          K R    G+  H  
Sbjct: 12  NCY---GIHIRKLTVISEAKPESSKVENVVHIDRVSNLHYLLQLCAKTRSSMGGRACHAQ 68

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           +    +++     N L++MY KC  +  A+K     E+    +V W T++    ++ E  
Sbjct: 69  IIRIGLEMDILTSNMLINMYSKCSLVDSARKKFN--EMPVKSLVSWNTVIGALTQNAEDR 126

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDA------------EFKYKSCASIGALYHGIWV 326
           EA +L  +M           IS +L   A             F  K+            +
Sbjct: 127 EALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALL 186

Query: 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
           HVY K       +I+ A  +F  + EKN   W+S++A Y   G  ++A+ +F   +  G 
Sbjct: 187 HVYAK-----CSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGF 241

Query: 387 KPDQVTFIALLSACSHGGLVDEGYDF--LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444
             D     + +SAC+    + EG     +S KS        +     ++D+  + G + E
Sbjct: 242 DQDPFMISSAVSACAGLATLIEGKQVHAISHKS---GFGSNIYVSSSLIDMYAKCGCIRE 298

Query: 445 SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL-NDGAHVLLANIYA 503
           +      +     + +W++++     H     A   F+ + +     +D  +V + N  +
Sbjct: 299 AYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACS 358

Query: 504 KAGRLDDMSR-IRMKLRDMGLKKQ-LGYS----LIEQGGFVHK 540
             G  ++  +   + +R   L    L YS    ++ + G VHK
Sbjct: 359 HMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHK 401


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 193/636 (30%), Positives = 318/636 (50%), Gaps = 55/636 (8%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSI 110
           C S+++ +++   +   N +    + +   E  +    +G    ++  GD+P   ++ ++
Sbjct: 131 CRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTL 190

Query: 111 IENQLIN------GYPQEVFAIYLYLVTRTVLLN-------KCGKLKEVCQLFDKLPNRD 157
           +++ L+N      G       I   L + T +         KCG L    ++FD++  + 
Sbjct: 191 LKS-LVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKK 249

Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
            ++   ++  YT  G  R+ L L   +  EGV  D      ++ A   L +L +GK +H 
Sbjct: 250 PVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHA 309

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
            + +  ++   S+   LVD Y KC     A +     EI E + V W+ ++SGY + ++ 
Sbjct: 310 CVAKLGLESEVSVGTPLVDFYIKCSSFESACRAF--QEIREPNDVSWSAIISGYCQMSQF 367

Query: 278 DEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS----CASIGALYHGIWVHV-YIKK 332
           +EA + F  +  +N        + +LN    F Y S    C+ +     G  VH   IK+
Sbjct: 368 EEAVKTFKSLRSKN--------ASILNS---FTYTSIFQACSVLADCNIGGQVHADAIKR 416

Query: 333 NQIS--------------IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
           + I                  ++ A ++F  +   ++  WT+ I+ +A  G+A +A+ LF
Sbjct: 417 SLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLF 476

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
            +M   G KP+ VTFIA+L+ACSH GLV++G   L    R YN+ P + HY CM+D+  R
Sbjct: 477 EKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYAR 536

Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
           +G L+E+  F+ +MP  PD   W   L  C  H+N++L E A + L + DP +   +VL 
Sbjct: 537 SGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLP 596

Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
            N+Y  AG+ ++ + +   + +  LKK+L  S I++ G +H+F  GD  +P ++EIY  L
Sbjct: 597 FNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKL 656

Query: 559 NEIEMTLQQQGLQ-------ETSLQHRERLAVAFGLIST--SEKTTIRIVNNLRICGDCH 609
            E +  ++    Q       E  L H ERLA+AFGLIS   +    I++  NLR C DCH
Sbjct: 657 KEFDGFMEGDMFQCNMTERREQLLDHSERLAIAFGLISVHGNAPAPIKVFKNLRACPDCH 716

Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            F K  S V   EIVIRD+ RFH F+ G+CSC DYW
Sbjct: 717 EFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 179/554 (32%), Positives = 293/554 (52%), Gaps = 51/554 (9%)

Query: 128 LYLVTRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           +YL TR ++L  +CG L +   + D +P R+V+SW  MIS Y+  G + E L L  +M  
Sbjct: 76  VYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLR 135

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            G   +E T+ +++++    + ++  + +H  + ++  +    + + L+DMY K G I E
Sbjct: 136 AGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQE 195

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA----RRLFDEMVERNLISWTLMISGM 302
           A+K+     + E D V  T ++SGY +    DEA    R+L+   ++ N +++T +++  
Sbjct: 196 ARKVFDM--LPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLT-- 251

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI-------------ELAYD--LF 347
                     S + + +L +G  VH  I + ++    +             +L Y   +F
Sbjct: 252 ----------SLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVF 301

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
             + +++   W +++  Y   G  Q+ + LF  M E   KPD VT +A+LS CSHGGLVD
Sbjct: 302 DNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVD 360

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG D      +  N    + HYGC++DLLGR+G L+++ + I  MP  P  +IW SLL A
Sbjct: 361 EGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGA 420

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H NV + E   + L + +P N G +V+L+NIYA AG   D+ R+R  + +  + K+ 
Sbjct: 421 CRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEP 480

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
             S I     +H F S + F+P  ++I   + E+ + ++  G                 +
Sbjct: 481 AKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKE 540

Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
              L H E+LA+ FGL++T    TI+++ NLRIC DCH+F K  S+VY REI +RD  RF
Sbjct: 541 RMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRF 600

Query: 632 HRFQGGQCSCRDYW 645
           H  + G C+C DYW
Sbjct: 601 HLLKDGACTCGDYW 614


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  311 bits (797), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 189/594 (31%), Positives = 302/594 (50%), Gaps = 68/594 (11%)

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISW 161
           P++K  ++     + + +P  +F +Y  ++     L +   L    ++F   PN +   W
Sbjct: 36  PQLKQIHAQTLRTVNSNHPNAIF-LYTNILQHYSSLTQ-PNLTYATRVFHHFPNPNSFMW 93

Query: 162 NTMISCYT----------SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
           NT+I  Y           +M +Y+  + +  K       PD  T   ++ A      L  
Sbjct: 94  NTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAV----PDNHTFPIVLKACAYTFSLCE 149

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           GK +H  + +   +    + N LV  Y  CG +  A+K+   Y++ E + V W  ++  Y
Sbjct: 150 GKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMF--YKMSERNEVSWNIMIDSY 207

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331
            K    D A R+F EM   +      M S +          +CA +GAL  G+WVH YI 
Sbjct: 208 AKGGIFDTALRMFGEMQRVHDPDGYTMQSVI---------SACAGLGALSLGLWVHAYIL 258

Query: 332 K------------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
           K            N   +D       +E+A  +F  ++ +++  W S+I   AM G A+ 
Sbjct: 259 KKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKA 318

Query: 374 AIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           A++ ++ M +     P+ +TF+ +LSAC+H G+VDEG       ++ YN++P+++HYGC+
Sbjct: 319 ALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCL 378

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ--NVKLAEHAFKHLTETDP- 489
           VDL  RAG + E+ N ++ M I PD  IW SLL AC C Q  +V+L+E   K + E++  
Sbjct: 379 VDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDAC-CKQYASVELSEEMAKQVFESEGS 437

Query: 490 -LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
             + G +VLL+ +YA A R +D+  +R  + + G+ K+ G S+IE  G VH+F +GD  +
Sbjct: 438 VCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTH 497

Query: 549 PHSEEIYLMLNEIEMTLQ-----------------QQGLQETSLQHRERLAVAFGLISTS 591
           P SE IY ++ EIE  L+                   G   T   H ERLA+AFG++++ 
Sbjct: 498 PKSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSK 557

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
               IR+  NLR+C DCH   K+ S++YN EI++RD  RFH F+ G CSC DYW
Sbjct: 558 PDVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 197/701 (28%), Positives = 335/701 (47%), Gaps = 103/701 (14%)

Query: 39  PVSLDVIMVERSCS-----SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
           P S+  + V  SC      S+++   IH  ++   + R+  + T + +     G L  A 
Sbjct: 110 PNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAW 169

Query: 94  QI-IRQGDE-PEIKI--WNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC 140
           ++ +R+ DE P   +   +++I     NG+PQE   ++  +         VT   +LN C
Sbjct: 170 EVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNAC 229

Query: 141 G---------------------------------------KLKEVCQLFDKLPNRDVISW 161
                                                    L      FD + + DV+SW
Sbjct: 230 SMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSW 289

Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL---EMGKNLHLF 218
           N M + Y      RE L L  +M  EGV P   T ++ ++A           +GK +   
Sbjct: 290 NAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSL 349

Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
           LEE+ ++   ++ N  ++MY KCG + +A+ +  R      D + W ++++ Y       
Sbjct: 350 LEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGK 409

Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI--- 335
           EA  LF  M    L+     ++ +   DA     S A       G  +H  +  N     
Sbjct: 410 EAFELFQAMEAEKLVKPN-KVTFVAVLDASTSRTSIA------QGREIHARVVSNGFESD 462

Query: 336 ---------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
                          S+D+ +  +D  S  ++++V  WTS++A YA  G A++A+ LF  
Sbjct: 463 TVIQNALLNMYAKCGSLDDAQAIFDKSSS-NQEDVIAWTSLVAGYAQYGQAERALKLFWT 521

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M++ G +P+ +TFI+ L+AC+HGG +++G + LS  +  + I P  +H+ C+VDLLGR G
Sbjct: 522 MQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCG 581

Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
            L+E+   +       DV  W +LL AC+  + ++  E   + + + DP    ++++LA+
Sbjct: 582 RLDEAEKLLERTS-QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLAS 640

Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
           +YA AGR ++ + IR  + D G++   G S +E    +H F++GD  +P SEEIYL L  
Sbjct: 641 MYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELER 700

Query: 561 IEMTLQQQG--------LQETSLQHRER--------LAVAFGLISTSEKTTIRIVNNLRI 604
           +  +++  G        L + S +H+ER        LA+AFGL+ST   + +R++ NLR+
Sbjct: 701 LHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRV 760

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           C DCH+  K+ S+V  R+I++RD+ R+H F  G CSC DYW
Sbjct: 761 CSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 149/333 (44%), Gaps = 39/333 (11%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
           G+L   ++I  Q  + + +  NS++ N LI+ Y                  +KCG L + 
Sbjct: 21  GNLAAGRRIHSQISDRDFEE-NSVLGNALISMY------------------SKCGSLIDA 61

Query: 147 CQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISA 202
            Q FD+LP    RDV++WN MIS +   G  RE L L   M  +G  P + VT VS++ +
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDS 121

Query: 203 --RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE-- 258
                L  LE  + +H  +  + ++    +   LVD Y K G + +A ++  R   +E  
Sbjct: 122 CVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPS 181

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCASI 317
             +V  + ++S   ++    E+ RLF  M +E    S   ++S +LN  +     S A+ 
Sbjct: 182 TSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVS-VLNACSMLPVGS-ATA 239

Query: 318 GALYHGIWVHVYIKKNQISI---------DNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
             L   + V    + N +           +++  A   F  I   +V  W ++ AAY   
Sbjct: 240 FVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQH 299

Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
              ++A+ LF  M   G +P   TFI  L+AC+
Sbjct: 300 HRPREALVLFERMLLEGVRPSVATFITALTACA 332



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 115/228 (50%), Gaps = 15/228 (6%)

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           V P+   +++L++A + L +L  G+ +H  + +   + +  L N L+ MY KCG + +A+
Sbjct: 3   VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAK 62

Query: 249 KLLGRY-EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW-TLMISGMLNQD 306
           +   R     + DVV W  ++S ++++    EA +LF +M         ++    +L+  
Sbjct: 63  QAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSC 122

Query: 307 AEFKYKSCASIGALY-----HGIWVHVYIKKNQI----SIDNIELAYDLFSEISEK---- 353
            E    S   + A++      GI    +++   +     + +++ A+++F   S++    
Sbjct: 123 VEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPST 182

Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           ++   +++I+A    G  Q+++ LF  M   GTKP  VT +++L+ACS
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACS 230



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 87/180 (48%), Gaps = 25/180 (13%)

Query: 313 SCASIGALYHGIWVHVYI-----KKNQI-------------SIDNIELAYDLFSEISEKN 354
           +C+ +G L  G  +H  I     ++N +             S+ + + A+D     S+++
Sbjct: 16  ACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRD 75

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFL 413
           V  W ++I+A+   G A++A+ LF +M+  G  P + VTF+++L +C   GL+    D  
Sbjct: 76  VVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSL-EDVR 134

Query: 414 SKKSRVYNIKPKMQHY--GCMVDLLGRAGHLEESAN-FITSMPIPPDVSI--WSSLLRAC 468
           +   R+     + + +    +VD  G+ G L+++   F+      P  S+   S+++ AC
Sbjct: 135 AIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISAC 194


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 291/569 (51%), Gaps = 68/569 (11%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG-AEGVSPDEVTMVSL 199
           G+L     L  + P+   + + + I  ++S G++   L LLS+M  + G+ P   T+ + 
Sbjct: 76  GRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSAS 135

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A      L +G+ LH +  +  +     +   L+ MY + G    A+ L    + D  
Sbjct: 136 LPA---CGGLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDP- 191

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------ML 303
            VV  T +++ Y K    D+AR LFD +  ++LI W  M+ G                ML
Sbjct: 192 HVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRML 251

Query: 304 NQDAE-------FKYKSCASIGALYHGIWVHVYIKKNQIS------------ID------ 338
               E           + A +G    G W+H ++  +               ID      
Sbjct: 252 RSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCG 311

Query: 339 NIELAYDLFSEIS--EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
           ++E A  +F ++   ++++  W +++  YAM GH+++A+  F ++   G  P  +TFI +
Sbjct: 312 SLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGV 371

Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP-IP 455
           L+ACSH GLVDEG +     +  Y I+PK++HYGCMVDLLGRAG +EE+   + SM    
Sbjct: 372 LNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTK 431

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
           PD  +W+SLL ACR H+N++L +    HL      N G +VLL+N+YA AG   ++ R+R
Sbjct: 432 PDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVR 491

Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG------ 569
             +R  G++K+ G S +E G  V +F +GD  +P + EIY  L E+    + +G      
Sbjct: 492 AMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTE 551

Query: 570 ------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
                        +E +L  H E+LA+AFGLIST   T I+IV NLR C DCH+ +K+ S
Sbjct: 552 LVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVLKLVS 611

Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +V  R+IV RD  RFH F  G C+C DYW
Sbjct: 612 EVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 175/527 (33%), Positives = 281/527 (53%), Gaps = 30/527 (5%)

Query: 139 KCGKL-KEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           KC  + ++  + F  + + +VISW ++I+ ++  G+  E + +   M   GV P+  T+ 
Sbjct: 364 KCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLS 423

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           +++ A   ++ L   + LH ++ ++       + N LVD Y   G + +A  +     + 
Sbjct: 424 TILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSM--MK 481

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
             DV+ +T+L +   ++   + A  +   M + ++      ++  L+        + A I
Sbjct: 482 HRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLS--------AAAGI 533

Query: 318 GALYHGIWVHVYIKKNQ----ISIDN-----------IELAYDLFSEISEKNVYLWTSVI 362
             +  G  +H Y  K+     IS+ N           I  A+  F EI+E +   W  +I
Sbjct: 534 PIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLI 593

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
              A  GH   A+  F +M   G +PDQ+T + +L ACSHGGLVD G D+       + I
Sbjct: 594 FGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGI 653

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
           +P++ HY C+VDLLGRAG LEE+ N I +MP  PD  I+ +LL AC+ H N+ L EH  +
Sbjct: 654 RPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMAR 713

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
              E DP +   +VLLAN+Y  +GR +   + R  +R+ G++K  G S +E+   VH FT
Sbjct: 714 QGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFT 773

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGL--QETS--LQHRERLAVAFGLISTSEKTTIRI 598
           +GD  +P   +I+  +  +    + QG+  QE      H E+LAVAFGLIST  K  IRI
Sbjct: 774 AGDTSHPQIGKIHEKIESLIAQFRNQGIWYQENRALAHHSEKLAVAFGLISTPPKAPIRI 833

Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + N+RIC DCH F+   +++ +REI++RD  RFH F+ G+CSCR YW
Sbjct: 834 IKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW 880



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 164/345 (47%), Gaps = 27/345 (7%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KC  + E  QLFD++P RDV SW  ++S Y  +G + E L L   M   G  P+E T
Sbjct: 59  LYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFT 118

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           + + + + + LR+   G      + +S    +  L + L+D Y KCG   EA ++   Y 
Sbjct: 119 LSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVF-EY- 176

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           ++  D+V WT +VS +V++    +A +L+  M++  +           N+    K  + +
Sbjct: 177 MNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAP---------NEFTFVKLLAAS 227

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
           S   L +G  VH ++   +I ++               +IE A  +     E +V+LWT+
Sbjct: 228 SFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTA 287

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+ +  +   ++AI  F EME +G  P+  T+  +L+ACS    +D G    S+   + 
Sbjct: 288 IISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVV-MA 346

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++  +     +VD+  +  ++ E A         P+V  W+SL+
Sbjct: 347 GLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLI 391



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 4/137 (2%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KCG + +  + F ++   D +SWN +I    S G     L     M   GV PD++T
Sbjct: 564 LYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQIT 623

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            + ++ A +    ++MG +    + E    I   L +Y  LVD+  + G++ EA  ++  
Sbjct: 624 CLLVLYACSHGGLVDMGLDYFQSMREKH-GIRPQLDHYVCLVDLLGRAGRLEEAMNVIET 682

Query: 254 YEIDEVDVVLWTTLVSG 270
               + D +++ TL+  
Sbjct: 683 MPF-KPDALIYKTLLGA 698


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/551 (33%), Positives = 284/551 (51%), Gaps = 90/551 (16%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREG-LGLLSKMGAEGVSPDEVTMVSLISARTKL 206
           ++F  +P  +V+SW  +IS Y   G+     + L  +M  E + P+ +T  +L+ A   L
Sbjct: 305 KVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANL 364

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            D + G+ +H  + +++                                I  V+VV    
Sbjct: 365 SDQDSGRQIHAHVLKTS--------------------------------IAHVNVV-GNA 391

Query: 267 LVSGYVKSNERDEARRLFDEM-------------VERNLISWTLMISGMLNQDAEFKYKS 313
           LVS Y +S   +EAR+ FD++              ERN  S +  I GM +  + F + S
Sbjct: 392 LVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDGVSTFTFAS 451

Query: 314 ----CASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKN 354
                AS+G L  G  +H    K     D                +E A   F E+ + N
Sbjct: 452 LLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHN 511

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           V  WTS+I+  A  G+A++A+ +F +M   G KP+ VT+IA+LSACSH GLV EG +   
Sbjct: 512 VISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFR 571

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
              + + + P+M+HY C+VDLL R+G +EE+  FI  MP   D  +W +LL ACR + N 
Sbjct: 572 SMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNT 631

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           ++ E A  H+   +P +   +VLL+N+YA AG  D+++RIR  +RD  L K+ G S ++ 
Sbjct: 632 EIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDV 691

Query: 535 GGFVHKFTSGDIFNPHSEEIY--------------------LMLNEIEMTLQQQGLQETS 574
           G  +H+F +GD  +P + +IY                    ++L+++   L++Q L    
Sbjct: 692 GNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYL---- 747

Query: 575 LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
           LQH E++AVAFGLI+TS    +RI  NLR+C DCHS +K  S+   REI++RD+ RFHR 
Sbjct: 748 LQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRM 807

Query: 635 QGGQCSCRDYW 645
           + G CSC +YW
Sbjct: 808 KDGICSCGEYW 818



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 179/416 (43%), Gaps = 62/416 (14%)

Query: 59  RIHSHLITTNLMRDPQISTQVFEFLVFT---GDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
           R H + +T +L+     S    + L      GDL   + + R+    EI   ++++ N L
Sbjct: 23  RCHLNPLTAHLVLSSDHSCDAAKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSL 82

Query: 116 INGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMY 174
           +  Y                  +KCG ++   ++FD++   RD++SW  M SC    G  
Sbjct: 83  LTMY------------------SKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAE 124

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISA--RTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
           RE L LL +M   G+ P+  T+ +   A    +L  L  G  L   L+        S+  
Sbjct: 125 RESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGC 184

Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
            L+DM+ + G +  AQ++     + E   V+WT L++ YV++    +   LF  M++   
Sbjct: 185 ALIDMFARNGDLVAAQRVFD--GLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGF 242

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH-VYIKKNQIS--------ID----- 338
                 +S M++        +C  +G++  G  +H V ++   +S        +D     
Sbjct: 243 EPDGYSMSSMIS--------ACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKL 294

Query: 339 ----NIELAYDLFSEISEKNVYLWTSVIAAYAMAG-HAQKAIDLFLEMEETGTKPDQVTF 393
               ++E A  +F  +   NV  WT++I+ Y  +G      + LF EM     +P+ +T+
Sbjct: 295 KMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITY 354

Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY----GCMVDLLGRAGHLEES 445
             LL AC++    D G     ++   + +K  + H       +V +   +G +EE+
Sbjct: 355 SNLLKACANLSDQDSG-----RQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEA 405



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 165/412 (40%), Gaps = 79/412 (19%)

Query: 119 YPQEVF----AIYLYLVTRTV--------------LLNKCGKLKEVCQLFDKLPNRDVIS 160
           +PQE+F     + L  V +T               +  + G L    ++FD L  R  + 
Sbjct: 154 FPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVV 213

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           W  +I+ Y   G   + + L   M  +G  PD  +M S+ISA T+L  + +G+ LH    
Sbjct: 214 WTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVAL 273

Query: 221 ESTMKISGSLLNYLVDMYFKCG---KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN-E 276
              +     +   LVDMY K      +  A+K+     +   +V+ WT L+SGYV+S  +
Sbjct: 274 RLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVF--KTMPRHNVMSWTALISGYVQSGVQ 331

Query: 277 RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
            +    LF EM+  ++    +  S +L        K+CA++     G  +H ++ K  I+
Sbjct: 332 ENNVMALFREMLNESIRPNHITYSNLL--------KACANLSDQDSGRQIHAHVLKTSIA 383

Query: 337 IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG---HAQKAIDLFLEMEETGTKPD---- 389
             N+                +  ++++ YA +G    A+KA D   E       PD    
Sbjct: 384 HVNV----------------VGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETE 427

Query: 390 ------------------QVTFIALLSACSHGGLVDEGYDF--LSKKSRVYNIKPKMQHY 429
                               TF +LLSA +  GL+ +G     LS K+     +      
Sbjct: 428 RNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKA---GFRSDQGIS 484

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
             +V +  R G+LE++      M    +V  W+S++     H   K A   F
Sbjct: 485 NSLVSMYARCGYLEDACRAFDEMK-DHNVISWTSIISGLAKHGYAKQALSMF 535



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 47/268 (17%)

Query: 243 KIGEA-QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE-RNLISWTLMIS 300
           ++G A  + L R EI + D V+  +L++ Y K    + ARR+FD+M   R+L+SWT M S
Sbjct: 57  RLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMAS 116

Query: 301 GMLNQDAEFK-----------------YKSCASIGA--------LYHGIWVHVYIKKNQI 335
            +    AE +                 +  CA+  A        L  G+ +   +K    
Sbjct: 117 CLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFW 176

Query: 336 SID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
             D               ++  A  +F  + E+   +WT +I  Y  AG A K ++LFL 
Sbjct: 177 GTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLH 236

Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
           M + G +PD  +  +++SAC+  G V  G    S   R+  +       G +VD+  +  
Sbjct: 237 MLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCG-LVDMYAKLK 295

Query: 441 ---HLEESANFITSMPIPPDVSIWSSLL 465
               +E +     +MP   +V  W++L+
Sbjct: 296 MERSMEHARKVFKTMP-RHNVMSWTALI 322



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 74/134 (55%), Gaps = 4/134 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG L++ C+ FD++ + +VISW ++IS     G  ++ L +   M   GV P++VT ++
Sbjct: 493 RCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIA 552

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           ++SA + +  ++ GK  H    +    +   + +Y  +VD+  + G + EA++ +     
Sbjct: 553 VLSACSHVGLVKEGKE-HFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPC 611

Query: 257 DEVDVVLWTTLVSG 270
            + D ++W TL+S 
Sbjct: 612 -KADALVWKTLLSA 624


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 183/531 (34%), Positives = 274/531 (51%), Gaps = 43/531 (8%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           +LFD++P R++ +WN  IS   + G  RE +    +       P+ +T  + ++A +   
Sbjct: 114 KLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWL 173

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            L +G  LH  +  S      S+ N L+D Y KC +I  ++ +    E+   + V W +L
Sbjct: 174 HLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIF--TEMGTKNAVSWCSL 231

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           V+ YV+++E ++A  L+    +  + +   MIS +L+        +CA +  L  G  +H
Sbjct: 232 VAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLS--------ACAGMAGLELGRSIH 283

Query: 328 VYIKKNQI---------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            +  K  +                   IE +   F E+ EKN+    S+I  YA  G   
Sbjct: 284 AHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVD 343

Query: 373 KAIDLFLEMEE--TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
            A+ LF EM     G  P+ +TF++LLSACS  G V+ G          Y I+P  +HY 
Sbjct: 344 MALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYS 403

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
           C+VD+LGRAG +E +  FI  MPI P +S+W +L  ACR H   +L   A ++L + DP 
Sbjct: 404 CIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPK 463

Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
           + G HVLL+N +A AGR  + + +R +L+ +G+KK  GYS I     VH F + D  +  
Sbjct: 464 DSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHIL 523

Query: 551 SEEIYLML----NEIEMT------------LQQQGLQETSLQHRERLAVAFGLISTSEKT 594
           ++EI   L    NE+E              L+++        H E+LA+AFGL+S     
Sbjct: 524 NKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSV 583

Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            IRI  NLRICGDCHSF K  S    REI++RDN RFHRF+ G CSC+DYW
Sbjct: 584 PIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 634



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 135/342 (39%), Gaps = 80/342 (23%)

Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
           P R+V+SW ++IS     G +   L    +M  EGV P++ T      A   LR    GK
Sbjct: 19  PARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGK 78

Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
            +H                    +  KCG+I              +DV +  +    Y K
Sbjct: 79  QIHA-------------------LAVKCGRI--------------LDVFVGCSAFDMYCK 105

Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQ-------DAEFKYKS----------CAS 316
           +  RD+AR+LFDE+ ERNL +W   IS  +         +A  +++           CA 
Sbjct: 106 TRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAF 165

Query: 317 IGA------LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNV 355
           + A      L  G+ +H  + ++    D                I  +  +F+E+  KN 
Sbjct: 166 LNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNA 225

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W S++AAY      +KA  L+L   +   +       ++LSAC+    ++     L +
Sbjct: 226 VSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLE-----LGR 280

Query: 416 KSRVYNIKPKMQHY----GCMVDLLGRAGHLEESANFITSMP 453
               + +K  ++        +VD+ G+ G +E+S      MP
Sbjct: 281 SIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP 322



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 92/247 (37%), Gaps = 64/247 (25%)

Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK-------------------- 310
           Y K +  + AR +      RN++SWT +ISG L Q+  F                     
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISG-LAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 311 ----YKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEIS 351
               +K+ AS+     G  +H    K    +D                 + A  LF EI 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS---------- 401
           E+N+  W + I+     G  ++AI+ F+E       P+ +TF A L+ACS          
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 402 -HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
            HG ++  G+D              +     ++D  G+   +  S    T M     VS 
Sbjct: 181 LHGLVLRSGFD------------TDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVS- 227

Query: 461 WSSLLRA 467
           W SL+ A
Sbjct: 228 WCSLVAA 234



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV--SPDE 193
           +  KCG +++  Q FD++P +++++ N++I  Y   G     L L  +M   G   +P+ 
Sbjct: 304 MYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNY 363

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLL 251
           +T VSL+SA ++   +E G  +   +  ST  I     +Y  +VDM  + G +  A + +
Sbjct: 364 MTFVSLLSACSRAGAVENGMKIFDSM-RSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFI 422

Query: 252 GRYEIDEVDVVLWTTL 267
            +  I    + +W  L
Sbjct: 423 KKMPIQPT-ISVWGAL 437


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 192/550 (34%), Positives = 299/550 (54%), Gaps = 54/550 (9%)

Query: 138 NKCGKLKEVCQLFDKLPN-RDVISWNTMISCYTSMGMYREG---LGLLSKMGAEGVSPDE 193
           +K G L+E   +F  +   RD +SWN+MI  Y   G ++EG   L L  +M  +G   D 
Sbjct: 184 SKGGLLREAVSVFYGMDELRDEVSWNSMIVAY---GQHKEGAKALALYKEMIFKGFKIDM 240

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG---KIGEAQKL 250
            T+ S+++A T L  L  G+  H  L ++    +  + + L+D Y KCG    + +++K+
Sbjct: 241 FTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKV 300

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNE-RDEARRLFDEMV----ERNLISWTLMISGMLNQ 305
               EI   D+V+W T++SGY  + E  +EA + F +M       +  S+  + S   N 
Sbjct: 301 F--QEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNL 358

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN--IELAYD---------LFSEISEKN 354
            +      C  I    HG+ +  +I  N+IS++N  I L Y          +F  + E N
Sbjct: 359 SSP---SQCKQI----HGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELN 411

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
              +  +I  YA  GH  +A+ L+  M ++G  P+++TF+A+LSAC+H G VDEG ++ +
Sbjct: 412 AVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFN 471

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
                + I+P+ +HY CM+DLLGRAG LEE+  FI +MP  P    W++LL ACR H+N+
Sbjct: 472 TMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNM 531

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
            LAE A   L    PL    +V+LAN+YA A + ++M+ +R  +R   ++K+ G S IE 
Sbjct: 532 ALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEV 591

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---QETSL---------------- 575
               H F + D  +P   E+   L E+   +++ G    ++ ++                
Sbjct: 592 KKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLG 651

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LAVAFGL+ST +   + +V NLRICGDCH+ +K  S V  REI++RDN RFH F+
Sbjct: 652 HHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFK 711

Query: 636 GGQCSCRDYW 645
            G+CSC DYW
Sbjct: 712 DGKCSCGDYW 721



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 110/506 (21%), Positives = 198/506 (39%), Gaps = 81/506 (16%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           +H+  + + +     +S          G L YA+      +EP +  +N I++      Y
Sbjct: 30  LHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVK-----AY 84

Query: 120 PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLG 179
            ++                   K+    QLFD++P  D +S+NT+IS Y         + 
Sbjct: 85  AKD------------------SKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMV 126

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L  +M   G   D  T+  LI+A     DL   K LH F          S+ N  V  Y 
Sbjct: 127 LFKRMRKLGFEVDGFTLSGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNAFVTYYS 184

Query: 240 KCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
           K G + EA  +   Y +DE+ D V W +++  Y +  E  +A  L+ EM+ +        
Sbjct: 185 KGGLLREAVSVF--YGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFT 242

Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI-------------SIDNIELAYD 345
           ++ +LN      +      G  +HG  +     +N                 D +  +  
Sbjct: 243 LASVLNALTSLDH---LIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEK 299

Query: 346 LFSEISEKNVYLWTSVIAAYAMAGH-AQKAIDLFLEMEETGTKPDQVTFIALLSACS--- 401
           +F EI   ++ +W ++I+ Y+M    +++A+  F +M+  G +PD  +F+ + SACS   
Sbjct: 300 VFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLS 359

Query: 402 --------HG----------------GLVDEGYDF--LSKKSRVYNIKPKMQ--HYGCMV 433
                   HG                 L+   Y    L     V++  P++    + CM+
Sbjct: 360 SPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMI 419

Query: 434 DLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
               + GH  E+      M    I P+   + ++L AC     V   +  F  + ET  +
Sbjct: 420 KGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKI 479

Query: 491 NDGA--HVLLANIYAKAGRLDDMSRI 514
              A  +  + ++  +AG+L++  R 
Sbjct: 480 EPEAEHYSCMIDLLGRAGKLEEAERF 505



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 133/331 (40%), Gaps = 68/331 (20%)

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
           RDL  GK+LH    +S +  S  L N+ V++Y KCG++  A+     Y  +E +V  +  
Sbjct: 22  RDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAF--YSTEEPNVFSYNV 79

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK----YKSCASIGALYH 322
           +V  Y K ++   AR+LFDE+ + + +S+  +ISG  +    F     +K    +G    
Sbjct: 80  IVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVD 139

Query: 323 GIWVHVYIKK--------NQISIDNIELAYDLFSEISEKNVYL----------------- 357
           G  +   I           Q+   ++   +D +S ++   V                   
Sbjct: 140 GFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGM 199

Query: 358 --------WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-------- 401
                   W S+I AY       KA+ L+ EM   G K D  T  ++L+A +        
Sbjct: 200 DELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGG 259

Query: 402 ---HGGLVDEGYDFLSKKSRVYNIKPKMQHYGC-MVDLLGRAGHLEE--SANFITSMPIP 455
              HG L+  G+              +  H G  ++D   + G  +    +  +    + 
Sbjct: 260 RQFHGKLIKAGFH-------------QNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILS 306

Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
           PD+ +W++++       N +L+E A K   +
Sbjct: 307 PDLVVWNTMISGYS--MNEELSEEAVKSFRQ 335



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  K G L++   +FD++P  + +S+N MI  Y   G   E L L  +M   G++P+++T
Sbjct: 390 LYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKIT 449

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
            V+++SA      ++ G+     ++E T KI     +Y  ++D+  + GK+ EA++ +  
Sbjct: 450 FVAVLSACAHCGKVDEGQEYFNTMKE-TFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDA 508

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE-MVERNLISWTLMISGMLNQDAEFKYK 312
                  V  W  L+    K      A R  +E MV + L +   ++   +  DA  K++
Sbjct: 509 MPYKPGSVA-WAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADAR-KWE 566

Query: 313 SCASI 317
             AS+
Sbjct: 567 EMASV 571


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/538 (32%), Positives = 288/538 (53%), Gaps = 41/538 (7%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCG +++   +F+ +P+ DVI W+ +IS Y       +   +  +M    V P+E ++  
Sbjct: 296 KCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSG 355

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A   +  LE+G+ +H    +   +    + N L+DMY KC  +  + ++     + +
Sbjct: 356 VLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFS--SLQD 413

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
            + V W T++ GY +S   ++A  +F EM   +++S  +  S +L        ++CA+  
Sbjct: 414 ANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVL--------RACANTS 465

Query: 319 ALYHGIWVHVYIKKNQISIDNIEL---------------AYDLFSEISEKNVYLWTSVIA 363
           ++ H + +H  I+K+  + D I                 A  +F  I E +V  W S+I+
Sbjct: 466 SIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIIS 525

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           AYA+ G A  A++LF  M ++  K + VTF++LLS C   GLV++G    +     + IK
Sbjct: 526 AYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIK 585

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P M+HY C+V LLGRAG L ++  FI  +P  P   +W +LL +C  H+NV L  +A + 
Sbjct: 586 PSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEK 645

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           + + +P ++  +VLL+N+YA AG LD+++  R  +R++G+KK+ G S +E  G VH F+ 
Sbjct: 646 VLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSV 705

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQ--------HRERLAVAFGL 587
           G   +P    I  ML  + +   ++G        L +   +        H ERLA+A+GL
Sbjct: 706 GSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGL 765

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             T     IRI+ NLR C DCH+  KV S++  REI++RD  RFH F+ G CSC DYW
Sbjct: 766 SMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 170/385 (44%), Gaps = 32/385 (8%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG +     +FD +  +D ++W  M+SCY+   +    L   SKM   G  P+   + S 
Sbjct: 196 CGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSA 255

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + A   L    +GK +H    ++       +   L+DMY KCG I +A  +      D  
Sbjct: 256 LKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHD-- 313

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           DV+LW+ L+S Y +S + ++A  +F  M+   ++     +SG+L        ++CA+I  
Sbjct: 314 DVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVL--------QACANIAF 365

Query: 320 LYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G  +H           +++    + +     N+E + ++FS + + N   W ++I  
Sbjct: 366 LELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVG 425

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF--LSKKSRVYNI 422
           Y  +G A+ A+ +F EM        QVTF ++L AC++   +        L +KS   N 
Sbjct: 426 YCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNND 485

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
                    ++D   + G + ++     S+ +  DV  W+S++ A   H     A   F 
Sbjct: 486 TIVCNS---LIDTYAKCGFIRDALKVFESI-VECDVVSWNSIISAYALHGRATNALELFD 541

Query: 483 HLTETD-PLNDGAHVLLANIYAKAG 506
            + ++D   ND   V L ++    G
Sbjct: 542 RMNKSDIKANDVTFVSLLSVCGSTG 566



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 153/351 (43%), Gaps = 32/351 (9%)

Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
            VLLN   K G L    +LFD +P R+ +S+ T++  Y   G + E L L  ++  EG  
Sbjct: 86  NVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHE 145

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
            +   + +++     +    +   +H    +     +  +   L+D Y  CG +  A+ +
Sbjct: 146 VNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCV 205

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                I   D V WT +VS Y +++  + A   F +M          +++  L       
Sbjct: 206 FD--GIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCL- 262

Query: 311 YKSCASIGALYHGIWVH-VYIKKNQIS---------IDNIELAYDLFSEISEKNVYLWTS 360
             S A +G   HG  V  +Y  +  +            +IE A+ +F  I   +V LW+ 
Sbjct: 263 --SSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSF 320

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+ YA +   ++A ++FL M  +   P++ +   +L AC++         FL    +++
Sbjct: 321 LISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACAN-------IAFLELGEQIH 373

Query: 421 NIKPKMQHYG------CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           N+  K+ +         ++D+  +  ++E S    +S+    +VS W++++
Sbjct: 374 NLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVS-WNTII 423



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 49/275 (17%)

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW-TLMISGMLNQDA 307
           +++ R  + ++D      L++ Y K      ARRLFD M ERN +S+ TLM    L  + 
Sbjct: 70  RVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEF 129

Query: 308 EFKYKSCASIGALYHGI--WVHVYIKKNQISIDNIEL----------------------- 342
           E   +    +    H +  +V   I K  +++D   L                       
Sbjct: 130 EEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTAL 189

Query: 343 --AYDL----------FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
             AY L          F  I  K+   WT++++ Y+     + A++ F +M  TG KP+ 
Sbjct: 190 IDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNP 249

Query: 391 VTFIALLSA--CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448
               + L A  C    L+ +G    S K+ +Y+ +P +   G ++D+  + G +E+ A+ 
Sbjct: 250 FVLTSALKAAVCLSSALLGKGIHGCSVKT-LYDTEPHVG--GALLDMYAKCGDIED-AHA 305

Query: 449 ITSMPIPPDVSIWSSLL-RACRCHQNVKLAEHAFK 482
           I  M    DV +WS L+ R  +  QN    E AF+
Sbjct: 306 IFEMIPHDDVILWSFLISRYAQSCQN----EQAFE 336


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 190/550 (34%), Positives = 292/550 (53%), Gaps = 60/550 (10%)

Query: 141 GKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGL---GLLSKMGAEGVSPDEV 194
           G L E  ++F ++     RD +SWN MI    + G +REG+   GL  +M   G+  D  
Sbjct: 188 GFLSEARRVFREMGEGGGRDEVSWNAMI---VACGQHREGMEAVGLFREMVRRGLKVDMF 244

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC-GKIGEAQKLLGR 253
           TM S+++A T ++DL  G+  H  + +S    +  + + L+D+Y KC G + E +K+   
Sbjct: 245 TMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVF-- 302

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-SGMLNQDAEFKYK 312
            EI   D+VLW T++SG+           L++++ E  L  +  M  +G    D  F   
Sbjct: 303 EEITAPDLVLWNTMISGF----------SLYEDLSEDGLWCFREMQRNGFRPDDCSFVCV 352

Query: 313 SCA-------SIGALYHGIWVHVYIKKNQISID-----------NIELAYDLFSEISEKN 354
           + A       S+G   H + +   +  N++S++           N+  A  +F  + E N
Sbjct: 353 TSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHN 412

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
                S+IA YA  G   +++ LF  M E    P+ +TFIA+LSAC H G V+EG  + +
Sbjct: 413 TVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFN 472

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
                + I+P+ +HY CM+DLLGRAG L+E+   I +MP  P    W++LL ACR H NV
Sbjct: 473 MMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNV 532

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           +LA  A       +P N   +V+L+N+YA A R ++ + ++  +R+ G+KK+ G S IE 
Sbjct: 533 ELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEI 592

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------------QETSL 575
              VH F + D  +P  +EI++ + ++   ++Q G                    +   L
Sbjct: 593 DKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLL 652

Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
            H E+LAVAFGLIST E   I +V NLRICGDCH+ +K+ S +  REI +RD  RFH F+
Sbjct: 653 YHSEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFK 712

Query: 636 GGQCSCRDYW 645
            G CSCRDYW
Sbjct: 713 EGHCSCRDYW 722



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 148/331 (44%), Gaps = 24/331 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           ++FD++P  D++S+NT+I+ Y   G     L L  ++    +  D  T+  +I+A     
Sbjct: 96  RVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGD-- 153

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY-EIDEVDVVLWTT 266
           D+ + + LH F+         S+ N ++  Y + G + EA+++     E    D V W  
Sbjct: 154 DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNA 213

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           ++    +  E  EA  LF EMV R L      ++ +L     F        G  +HG+ +
Sbjct: 214 MIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTA---FTCVKDLVGGRQFHGMMI 270

Query: 327 HVYIKKN-QISIDNIEL----------AYDLFSEISEKNVYLWTSVIAAYAMAGH-AQKA 374
                 N  +    I+L             +F EI+  ++ LW ++I+ +++    ++  
Sbjct: 271 KSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDG 330

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF--LSKKSRV-YNIKPKMQHYGC 431
           +  F EM+  G +PD  +F+ + SACS+      G     L+ KS V YN   ++     
Sbjct: 331 LWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYN---RVSVNNA 387

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
           +V +  + G++ ++     +MP    VS+ S
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMPEHNTVSLNS 418



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
             + +KCG + +  ++FD +P  + +S N+MI+ Y   G+  E L L   M  + ++P+ 
Sbjct: 389 VAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNS 448

Query: 194 VTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           +T ++++SA      +E G K  ++  E   ++      + ++D+  + GK+ EA++++ 
Sbjct: 449 ITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIE 508

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
               +    + W TL+    K    + A +  +E +
Sbjct: 509 TMPFNP-GSIEWATLLGACRKHGNVELAVKAANEFL 543



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 30/262 (11%)

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL--LG 252
           T  +L+ A    RDL  GK LH    +S +  S  L N+   +Y KCG +  AQ    L 
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312
           +Y     +V  + TL++ Y K +    ARR+FDE+ + +++S+  +I+   ++       
Sbjct: 71  QYP----NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRG------ 120

Query: 313 SCASIGALYHGI-----WVHVYIKKNQISI--DNIELAYDL--FSEISEKNVY--LWTSV 361
            C     L+  +      +  +     I+   D++ L   L  F  +   + Y  +  +V
Sbjct: 121 ECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNAV 180

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR--- 418
           +A Y+  G   +A  +F EM E G + D+V++ A++ AC       E      +  R   
Sbjct: 181 LACYSRKGFLSEARRVFREMGEGGGR-DEVSWNAMIVACGQHREGMEAVGLFREMVRRGL 239

Query: 419 ---VYNIKPKMQHYGCMVDLLG 437
              ++ +   +  + C+ DL+G
Sbjct: 240 KVDMFTMASVLTAFTCVKDLVG 261


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 177/541 (32%), Positives = 290/541 (53%), Gaps = 50/541 (9%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSL 199
           G  K+  +LFD+LP++D++SWN++IS ++        LGLL +M  E G+ P+EVT++ +
Sbjct: 87  GCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPV 146

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           +SA   + +L++GK +H    +S M +   ++N L+++Y KCG +  A  L     +  +
Sbjct: 147 VSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSL 206

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK---SCAS 316
             V W ++V+ +V              + E+ +  + +M    +N D         +C +
Sbjct: 207 --VSWNSMVAVHVHMG-----------LAEKGIGYFIMMRRAGINSDQATVVSLLLACEN 253

Query: 317 IGALYHGIWVHVYIKKNQISIDNIELA---YDLFSEIS-------------EKNVYLWTS 360
           +G       VH YI    +   N+ +A    DL++++                +   WT+
Sbjct: 254 LGVRKLAEAVHGYILNGGLD-GNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTA 312

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           ++++YAM G  ++AI+ F  M   G  PD VTF  LLSACSH GLV+EG ++       Y
Sbjct: 313 MLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFY 372

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            ++ +++HY CMVDLLGR+GHL ++   I SMP+ P+  +W +L+ ACR   N++L +  
Sbjct: 373 GVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEV 432

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            + L   DP +   ++ L+N+Y+ AG+  D S++R  +++  L +  G S IE G  +H 
Sbjct: 433 AERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHC 492

Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL----------------QHRERLAVA 584
           F  GD  +P +E+IY  L E+    ++ G    +                 +H E+LA+A
Sbjct: 493 FVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIA 552

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGL+ T+    + I  N+RICGDCH F K+ S +  R I+IRD  RFH F  G CSC DY
Sbjct: 553 FGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDY 612

Query: 645 W 645
           W
Sbjct: 613 W 613


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 173/527 (32%), Positives = 281/527 (53%), Gaps = 27/527 (5%)

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
           + EV +LF+++P  D +S+N +I+ Y  +G  +E + L  ++             +++S 
Sbjct: 292 VNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSI 351

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
                DL+MG+ LH  +  S       + N LVDMY KCGK  EA ++  R  +     V
Sbjct: 352 AASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLR--LSSRSTV 409

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF-------KYKSCA 315
            WT ++S  V+    +   +LF EM   N+ +     + +L   A         +  SC 
Sbjct: 410 PWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCV 469

Query: 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            I + +  ++    +     +  +I+ A   F E+SE+NV  W ++++AYA  G  +  +
Sbjct: 470 -IRSGFMNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTL 528

Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
             F EM  +G +PD V+F+ +L+ACSH  LV+EG  + +  S VYN+ PK +HY  MVD 
Sbjct: 529 KSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDA 588

Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA- 494
           L R+G  +E+   +  MP  PD  +W+S+L +CR H+N  LA  A   L     L D A 
Sbjct: 589 LCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAP 648

Query: 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEI 554
           +V ++NI+A+AG+ D + +++  +RD G++K   YS +E    VH F++ D  +P   EI
Sbjct: 649 YVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEI 708

Query: 555 YLMLNEIEMTLQQQGL------------QETSLQ----HRERLAVAFGLISTSEKTTIRI 598
              +  +   ++++G             +E+ +     H ERLA+AF LI+T E + I +
Sbjct: 709 LRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPILV 768

Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           + NLR C DCH+ +KV S++  REI +RD+ RFH F+ G CSC DYW
Sbjct: 769 MKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 207/483 (42%), Gaps = 70/483 (14%)

Query: 94  QIIRQGDEPEIKIWNSIIEN-----------QLINGYP-QEVFAIYLYLVTRTVLLNKCG 141
           +I++ G +P    +N +I++           QL++  P +  F+I + +        K G
Sbjct: 33  RIVKTGFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYV----KSG 88

Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            L    ++FD    R V++W TMI  Y+    + +   L ++M   G  PD VT ++L+ 
Sbjct: 89  NLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLL- 147

Query: 202 ARTKLRDLEMGKNL---HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
             T   DLE+ K L   H  + +    ++  + N L+D YFK G +  A++L    E+  
Sbjct: 148 --TGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLF--LEMCG 203

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL------ISWTLMISGMLNQDAEFKYK 312
            D V +  +++GY  +   +EA  LF EM  +NL       ++  +IS  +  D      
Sbjct: 204 WDSVSFNVMITGYANNGLNEEAIELFVEM--QNLGFKPSDFTFAAVISASVGLDD----- 256

Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAY-----------DLFSEISEKNVYLWTSV 361
              + G   HG  V     +N + + N  L +            LF+E+ E +   +  +
Sbjct: 257 --TAFGQQIHGFVVKTSFIRN-VFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVI 313

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I AYA  G  +++IDLF E++ T        F  +LS  +    +  G   L  +  V  
Sbjct: 314 ITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQ-LHAQVVVSM 372

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK--LAEH 479
             P  +    +VD+  + G  EE+      +     V  W++++ A     NV+  L E+
Sbjct: 373 ADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVP-WTAMISA-----NVQRGLHEN 426

Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
             K   E         +  AN+ A       + +    L  + L KQL +S + + GF++
Sbjct: 427 GLKLFYE---------MRRANVSADQATFACVLKASANLASILLGKQL-HSCVIRSGFMN 476

Query: 540 KFT 542
            ++
Sbjct: 477 VYS 479



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           C  +K+  + F+++  R+V++WN ++S Y   G  +  L    +M   G  PD V+ + +
Sbjct: 490 CASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCI 549

Query: 200 ISARTKLRDLEMGKNLHLFLEESTM-KISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           ++A +  R +E G  L  F + S +  ++    +Y  +VD   + G+  EA+KL+G+   
Sbjct: 550 LTACSHCRLVEEG--LKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPF 607

Query: 257 DEVDVVLWTTLV-SGYVKSN---ERDEARRLFDEMVERNLISWTLM 298
            E D ++WT+++ S  +  N    R  A +LF+  V R+   +  M
Sbjct: 608 -EPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTM 652


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 253/472 (53%), Gaps = 62/472 (13%)

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
            N ++  +   G +  A++L  R  +     V WT++V+G  ++ +   ARRLF+EM  R
Sbjct: 78  FNSMIHAHAMSGDVVSARRLFER--VPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVR 135

Query: 291 NLISWTLMISGMLNQ----DAEFKYKSCASIGALYH-------------------GIWVH 327
           +L+SW  M+SG+       +A   ++   + G   +                   G W+H
Sbjct: 136 DLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIH 195

Query: 328 VYIKKNQI-----------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
            ++++ ++                     +ELA D+F+++  +N   W ++I   AM G+
Sbjct: 196 AFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGY 255

Query: 371 AQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
           + KA+D+F +ME +    PD+VTF+ +L ACSHGG VD G +      + Y I+  ++HY
Sbjct: 256 SAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHY 315

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
            CMVDLL R+GHL+E+   I  MP+ PD  +W +LL  CR H++VK+AE A   ++E + 
Sbjct: 316 ACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETA---ISEMEA 372

Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
              G HVLL+N+YA  GR   +  +R  +R  G++K  G S IE    +H+F SGD  +P
Sbjct: 373 TCSGDHVLLSNLYAAVGRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHP 432

Query: 550 HSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEK 593
              +I+  L EI   +QQQG                +E +L  H E+LA+AFGLI     
Sbjct: 433 SYNDIHAKLAEISARMQQQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPN 492

Query: 594 TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             IRIV NLR C DCH F K+ SQ+Y+ EIV+RD  RFH F  G CSC D+W
Sbjct: 493 VAIRIVKNLRFCADCHKFAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 153/385 (39%), Gaps = 68/385 (17%)

Query: 19  LVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQ 78
           LV+LGL P  R+             +I    +   +D+  R+   +      RD      
Sbjct: 35  LVKLGLQPYARVHNA----------LIQAYAASGLVDDARRVFDGMSH----RDTVSFNS 80

Query: 79  VFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN 138
           +      +GD+  A+++  +   P    W S++                         L 
Sbjct: 81  MIHAHAMSGDVVSARRLFERVPSPTPVTWTSMVAG-----------------------LC 117

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           + G +    +LF+++P RD++SWN M+S         E L L  +M AEG +P+  T++S
Sbjct: 118 RAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLS 177

Query: 199 LISARTKLRDLEMGKNLHLFLEESTM--KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
            ++A      LE GK +H F+E   +       L   L+DMY KCG +  A  +  +  +
Sbjct: 178 ALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTK--L 235

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCA 315
              +   W  +++G   +    +A  +F +M ++R ++   +   G+L            
Sbjct: 236 RSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLL----------- 284

Query: 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
              A  HG +V V     +     IE  Y +   +       +  ++   A +GH Q+A 
Sbjct: 285 ---ACSHGGFVDV----GREHFHMIEKKYGIRLILEH-----YACMVDLLARSGHLQEAH 332

Query: 376 DLFLEMEETGTKPDQVTFIALLSAC 400
            +   M     KPD V + ALL  C
Sbjct: 333 KIIAGMP---MKPDAVVWRALLGGC 354


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 202/684 (29%), Positives = 328/684 (47%), Gaps = 104/684 (15%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSI 110
           C  +DE  ++H+ +    L R+  +   + +     G L  AQ    +        WN +
Sbjct: 45  CRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNIL 104

Query: 111 IENQLINGYPQEVFAIYLYLVTRTVLLN-------------------------------- 138
           +     NG+P+    ++ ++ ++ V  N                                
Sbjct: 105 MAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEAL 164

Query: 139 ---------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
                          +C +++E  + FD+ P +DV+ W  MIS Y         L L+ +
Sbjct: 165 EIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRR 224

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH-----LFLEESTMKISGSLLNYLVDMY 238
           M  EG+     T VSL+ A     DL  G   H     + L+ S+  ++G+L+N    +Y
Sbjct: 225 MDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVN----LY 280

Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISWTL 297
            KCG++ +A+++L    +     V WT +++ Y ++    EA  LF  M +E    S   
Sbjct: 281 GKCGRVDDARRVLDAMPVRTS--VSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDIT 338

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK-----------NQI-----SIDNIE 341
           +IS +          SCA +G L  G  +H  I+            N +        N+E
Sbjct: 339 LISVV---------DSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLE 389

Query: 342 LAYDLFS--EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLS 398
           LA ++F    +  ++V  WT++I AYA  G  ++AI+LF EM  + GT+P++VTF+++L 
Sbjct: 390 LAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLC 449

Query: 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP-IPPD 457
           ACSH G +++ ++        + + P   HY C+VDLLGRAG L E+   +        D
Sbjct: 450 ACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEAD 509

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
           V  W + L AC+ + +++ ++ A K ++E +P N    VLL+N+YA  GR  D++RIR +
Sbjct: 510 VVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNE 569

Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
           ++  G+KK  G S IE    VH+F   D+ +P   EIY  L  +   +++ G        
Sbjct: 570 MKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMV 629

Query: 571 -----QETSLQ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
                +E  +Q    H ERLA+A G+IST   TT+R+V NLR+C DCH+  K  SQ+  R
Sbjct: 630 LRDVDEEKKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGR 689

Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
           +I++RD  RFH F+ G CSC DYW
Sbjct: 690 QIIVRDTSRFHHFKDGVCSCGDYW 713



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 29/332 (8%)

Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           + R L+  + LH  +    +  +  L N LVD Y K G +  AQ   GR  +       W
Sbjct: 44  QCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHS--W 101

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324
             L++ Y ++     A  LF  M  + +    + +S  L         +C +   L  G 
Sbjct: 102 NILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTAL--------LACTAARNLALGR 153

Query: 325 WVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
            ++  I    + ID+               IE A   F    EK+V  WT++I+AYA   
Sbjct: 154 KLNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNW 213

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
              +A++L   M+  G K    T+++LL AC+    +  G  F  + + +   +      
Sbjct: 214 RTSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVA 273

Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK--HLTET 487
           G +V+L G+ G ++++   + +MP+   VS W++++ A   + N   A + F+   L   
Sbjct: 274 GTLVNLYGKCGRVDDARRVLDAMPVRTSVS-WTAMIAAYAQNGNAAEAINLFQCMDLEGA 332

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           +P +D   + + +  A  G L    RI  ++R
Sbjct: 333 EP-SDITLISVVDSCAVLGTLSLGKRIHARIR 363


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/540 (33%), Positives = 287/540 (53%), Gaps = 50/540 (9%)

Query: 143  LKEVCQLFDKLPNRDVISWNTMISCY-TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            ++E  ++F  +P  D +SWN+ I    TS     + +    +M   G  P+ VT ++++S
Sbjct: 507  MEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILS 566

Query: 202  ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
            A + L  LE+G+ +H  + + ++    ++ N L+  Y KC ++ + + +  R   +  D 
Sbjct: 567  AVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMS-ERRDE 625

Query: 262  VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCASIGA 319
            V W  ++SGY+ +    +A  L           W +M  G    D        +CAS+  
Sbjct: 626  VSWNAMISGYIHNGILHKAMGLV----------WLMMQKGQRLDDFTLATVLSACASVAT 675

Query: 320  LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
            L  G+ VH    +  +  +                I+ A   F  +  +N+Y W S+I+ 
Sbjct: 676  LERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISG 735

Query: 365  YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
            YA  GH  KA+ LF +M++ G  PD VTF+ +LSACSH GLVDEG++       VY + P
Sbjct: 736  YARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAP 795

Query: 425  KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH---QNVKLAEHAF 481
            +++H+ CMVDLLGRAG +++   FI +MP+ P+  IW ++L AC C    +N +L   A 
Sbjct: 796  RIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGAC-CRANSRNTELGRRAA 854

Query: 482  KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
            K L E +PLN   +VLL+N++A  G+ +D+   R+ +R+  +KK+ G S +     VH F
Sbjct: 855  KMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVF 914

Query: 542  TSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ---------------HRERLAVAF 585
             +GD  +P  E+IY  L EI   ++  G + ET                  H E+LA+AF
Sbjct: 915  VAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYHSEKLAIAF 974

Query: 586  GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
             L   SE   IRI+ NLR+CGDCH+  K  S + NR+I++RD+ RFH F GG CSC+DYW
Sbjct: 975  VLTRQSE-LPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 170/380 (44%), Gaps = 25/380 (6%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L  KC  +     +F  +P++D +SWN++IS       + E +     M   G+ P + +
Sbjct: 399 LYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFS 458

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           ++S +S+   L  + +G+ +H    +  + +  S+ N L+ +Y +   + E QK+   + 
Sbjct: 459 VISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVF--FL 516

Query: 256 IDEVDVVLWTTLVSGYVKSNERD--EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
           + E D V W + + G + ++E    +A + F EM++     W       +N  +     S
Sbjct: 517 MPEYDQVSWNSFI-GALATSEASVLQAIKYFLEMMQ---AGWKPNRVTFINILSAVSSLS 572

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYD-----------LFSEISE-KNVYLWTSV 361
              +G   H + +   +  +  +I+N  LA+            +FS +SE ++   W ++
Sbjct: 573 LLELGRQIHALILKHSVADDN-AIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAM 631

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I+ Y   G   KA+ L   M + G + D  T   +LSAC+    ++ G +  +   R   
Sbjct: 632 ISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRAC- 690

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
           ++ ++     +VD+  + G ++ ++ F   MP+  ++  W+S++     H +   A   F
Sbjct: 691 LEAEVVVGSALVDMYAKCGKIDYASRFFELMPV-RNIYSWNSMISGYARHGHGGKALKLF 749

Query: 482 KHLTETDPLNDGAHVLLANI 501
             + +   L D  HV    +
Sbjct: 750 TQMKQHGQLPD--HVTFVGV 767



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/440 (20%), Positives = 174/440 (39%), Gaps = 80/440 (18%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P++LD      SC+ +++  ++H  +  T L  D      +    V  G+L  AQ++  +
Sbjct: 41  PLNLDYNRYRDSCT-VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDE 99

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN--KCGKLKEVCQ-------- 148
             +  +  W+ ++     NG P E   ++  +++  +L N    G     CQ        
Sbjct: 100 MPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLK 159

Query: 149 ----------------------------------------LFDKLPNRDVISWNTMISCY 168
                                                   +F+++  +   SWN++IS Y
Sbjct: 160 LGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVY 219

Query: 169 TSMGMYREGLGLLSKMGAEGVS----PDEVTMVSLISARTKLRD--LEMGKNLHLFLEES 222
              G       L S M  E       P+E T  SL++    L D  L + + +   +E+S
Sbjct: 220 CRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKS 279

Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
           +      + + LV  + + G I  A+ +    ++D+ + V    L+ G  + ++ +EA +
Sbjct: 280 SFVKDLYVGSALVSGFARYGLIDSAKMIFE--QMDDRNAVTMNGLMVGLARQHQGEEAAK 337

Query: 283 LFDEM---VERNLISWTLMISGM--LNQDAEFKYK-----------SCASIGALYHGIWV 326
           +F EM   VE N  S+ +++S     +   E K K           +   +  L     V
Sbjct: 338 IFKEMKDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALV 397

Query: 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
           ++Y K N  +IDN   A  +F  +  K+   W S+I+        ++A+  F  M   G 
Sbjct: 398 NLYAKCN--AIDN---ARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGM 452

Query: 387 KPDQVTFIALLSACSHGGLV 406
            P + + I+ LS+C+  G +
Sbjct: 453 VPSKFSVISTLSSCASLGWI 472



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 129/303 (42%), Gaps = 53/303 (17%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM----LNQDAEFKYKSCA 315
           DV    TLV+ +V++     A++LFDEM ++NL+SW+ ++SG     +  +A   ++   
Sbjct: 73  DVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGII 132

Query: 316 SIGALYH---------------------GIWVHVYIKKNQISID---------------- 338
           S G L +                     G+ +H  I K+  + D                
Sbjct: 133 SAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSA 192

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT----KPDQVTFI 394
           +I+ A  +F EI  K    W S+I+ Y   G A  A  LF  M+   T    +P++ TF 
Sbjct: 193 SIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFC 252

Query: 395 ALLS-ACSHGGLVDEGYDFLSKK-SRVYNIKPKMQHY--GCMVDLLGRAGHLEESANFIT 450
           +L++ ACS   LVD G   L +  +R+         Y    +V    R G ++ +     
Sbjct: 253 SLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFE 309

Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
            M     V++   ++   R HQ  + A+  FK + +   +N  ++ +L + + +   L +
Sbjct: 310 QMDDRNAVTMNGLMVGLARQHQGEEAAK-IFKEMKDLVEINASSYAVLLSAFTEFSNLKE 368

Query: 511 MSR 513
             R
Sbjct: 369 GKR 371



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 24/235 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KCGK+    + F+ +P R++ SWN+MIS Y   G   + L L ++M   G  PD VT V 
Sbjct: 707 KCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVG 766

Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           ++SA + +  ++ G ++     E   +       + +VD+  + G + + ++ +    ++
Sbjct: 767 VLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMN 826

Query: 258 EVDVVLWTTLVSGYVKSNERD-----EARRLFDEMVERNLISWTLMI------------- 299
             + ++W T++    ++N R+      A ++  E+   N +++ L+              
Sbjct: 827 P-NALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVE 885

Query: 300 -SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353
            + +  ++AE K ++  S   +  G  VHV++  +Q   +  E  YD   EI  K
Sbjct: 886 EARLAMRNAEVKKEAGCSWVTMKDG--VHVFVAGDQTHPEK-EKIYDKLKEIMNK 937


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 173/543 (31%), Positives = 287/543 (52%), Gaps = 49/543 (9%)

Query: 138  NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
            +K GK++E   LF      D+ SWN M+  Y   G + + L L   M   G   +++T+ 
Sbjct: 1054 SKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLA 1113

Query: 198  SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            +   A   L  L+ GK +   + +    +   +++ ++DMY KCG++  A+++    EI 
Sbjct: 1114 NAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFN--EIP 1171

Query: 258  EVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKS 313
              D V WTT++SG V++ + + A   +  M    V+ +  ++  ++            K+
Sbjct: 1172 SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLV------------KA 1219

Query: 314  CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
            C+ + AL  G  +H    K   + D               NIE A  LF   +   +  W
Sbjct: 1220 CSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASW 1279

Query: 359  TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
             ++I   A  G+A++A+  F EM+  G  PD+VTFI +LSACSH GLV E Y+      +
Sbjct: 1280 NAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQK 1339

Query: 419  VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
            +Y I+P+++HY C+VD L RAG + E+   I+SMP     S++ +LL ACR   + +  +
Sbjct: 1340 IYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGK 1399

Query: 479  HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
               + L   +P +  A+VLL+N+YA A + ++++  R  +R   +KK  G+S ++    V
Sbjct: 1400 RVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKV 1459

Query: 539  HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLA 582
            H F +GD  +  ++ IY  +  I   ++++G                +E SL  H E+LA
Sbjct: 1460 HLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLA 1519

Query: 583  VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
            +A+GL+ T   TT+R++ NLR+CGDCH+ +K  S+V+ RE+V+RD  RFH F+ G CSC 
Sbjct: 1520 IAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCG 1579

Query: 643  DYW 645
            DYW
Sbjct: 1580 DYW 1582



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 158/331 (47%), Gaps = 34/331 (10%)

Query: 157  DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
            DVI+WN  +S +   G   E +     M    V+ D +T V ++S    L  LE+GK +H
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 217  LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276
              +  S +    S+ N L++MY K G +  A+ +   ++++EVD+V W T++SG   S  
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVF--WQMNEVDLVSWNTMISGCALSGL 987

Query: 277  RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH-GIWVHVYIKKNQI 335
             + +  +F +++   L+     ++ +L        ++C+S+G   H    +H    K  +
Sbjct: 988  EECSVGMFVDLLRGGLLPDQFTVASVL--------RACSSLGGGCHLATQIHACAMKAGV 1039

Query: 336  SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
             +D+               +E A  LF      ++  W +++  Y ++G   KA+ L++ 
Sbjct: 1040 VLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYIL 1099

Query: 381  MEETGTKPDQVTFIALLSACSHGGLV--DEGYDFLS-KKSRVYNIKPKMQHYGCMVDLLG 437
            M+E+G + +Q+T     +A + GGLV   +G    +    R +N+   +     ++D+  
Sbjct: 1100 MQESGERANQITLAN--AAKAAGGLVGLKQGKQIQAVVVKRGFNL--DLFVISGVLDMYL 1155

Query: 438  RAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
            + G +E +      +P P DV+ W++++  C
Sbjct: 1156 KCGEMESARRIFNEIPSPDDVA-WTTMISGC 1185



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 105/512 (20%), Positives = 194/512 (37%), Gaps = 93/512 (18%)

Query: 135  VLLNKCGKLKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
             + +KCG L    +LFD  P+  RD+++WN ++S +      R+G  L   +    VS  
Sbjct: 669  TMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSAT 726

Query: 193  EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
              T+  +             ++LH +  +  ++    +   LV++Y K G+I EA+ L  
Sbjct: 727  RHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFD 786

Query: 253  RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML-----NQDA 307
               +   DVVLW  ++  YV +    EA  LF E     L    + +  +       Q+ 
Sbjct: 787  GMGLR--DVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNV 844

Query: 308  -EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
             E++ K   +     +G  + +Y   +  S                 +V  W   ++ + 
Sbjct: 845  LEWQLKQLKA-----YGTKLFMYDDDDDGS-----------------DVIAWNKTLSWFL 882

Query: 367  MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDFL-- 413
              G   +A+D F++M  +    D +TF+ +LS  +           HG +V  G D +  
Sbjct: 883  QRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVS 942

Query: 414  ------------SKKSRVYNIKPKMQH-----YGCMVDLLGRAGHLEESANFITSM---P 453
                           SR   +  +M       +  M+     +G  E S      +    
Sbjct: 943  VGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGG 1002

Query: 454  IPPDVSIWSSLLRACR-----CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508
            + PD    +S+LRAC      CH   ++   A K     D         L ++Y+K+G++
Sbjct: 1003 LLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSF---VSTTLIDVYSKSGKM 1059

Query: 509  DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF-TSGDIFNPHSEEIYLMLNEIEMTLQQ 567
            ++   +           Q G+ L      +H +  SGD   P +  +Y++       +Q+
Sbjct: 1060 EEAEFL--------FVNQDGFDLASWNAMMHGYIVSGDF--PKALRLYIL-------MQE 1102

Query: 568  QGLQETSLQHRERLAVAFGLISTSEKTTIRIV 599
             G +   +        A GL+   +   I+ V
Sbjct: 1103 SGERANQITLANAAKAAGGLVGLKQGKQIQAV 1134



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 25/204 (12%)

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           DL +GK  H  +  S       L N L+ MY KCG +  A+KL         D+V W  +
Sbjct: 641 DLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAI 700

Query: 268 VSGYVKSNERDEARRLFD--EMVERNLISWT---------LMISGMLNQDAEFKYKSCAS 316
           +S +      D+AR  F    ++ R+ +S T         + +       AE  +     
Sbjct: 701 LSAHA-----DKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVK 755

Query: 317 IG----ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
           IG        G  V++Y K        I  A  LF  +  ++V LW  ++ AY   G   
Sbjct: 756 IGLQWDVFVAGALVNIYAK-----FGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEY 810

Query: 373 KAIDLFLEMEETGTKPDQVTFIAL 396
           +A+ LF E   TG +PD VT   L
Sbjct: 811 EALLLFSEFNRTGLRPDDVTLCTL 834


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 200/654 (30%), Positives = 327/654 (50%), Gaps = 63/654 (9%)

Query: 40  VSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQG 99
           V   +I +   C S ++  ++   +  TNL+    I T   +     G  G A +  R  
Sbjct: 298 VGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADH----GHCGEALRYFRMM 353

Query: 100 DEPEIKIWNSIIENQLINGYP-----QEVFAIYLYLV---------TRTVLLN---KCGK 142
            +  I + N +    L+NG+      +E+  I+L +           R  L+N   +C  
Sbjct: 354 QQEGI-LPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCES 412

Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
             +   +FD+L   ++ISWN+MI  Y     + + L L   M  +G+ PD V  ++++ A
Sbjct: 413 PDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGA 472

Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
            T        K +H  +EES +  S  +   LV+MY K G++  A+ +L   E+DE  + 
Sbjct: 473 CTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVIL--QEMDEQQIT 530

Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
            W  L++GY       EA   + ++    +    +    +LN        +C S  +L  
Sbjct: 531 AWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLN--------ACTSSTSLAE 582

Query: 323 GIWVHV----------YIKKNQIS-----IDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
           G  +H            I KN ++       ++E A  +F  +  ++   W  ++ AYA 
Sbjct: 583 GKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQ 642

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
            G +++ + L  +ME+ G K + +TF+++LS+CSH GL+ EG  +         I+ K +
Sbjct: 643 HGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTE 702

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
           HYGC+VDLLGRAG L+E+  +I+ MP+ P +  W+SLL ACR  +++   + A   L E 
Sbjct: 703 HYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLEL 762

Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
           DP N  A V+L+NIY++ G   + +++R  +    +KK  G S I+    VH+F   D  
Sbjct: 763 DPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTS 822

Query: 548 NPHSEEIYLMLNEIEMTLQQQGL--------------QETSL--QHRERLAVAFGLISTS 591
           +P + EIY  + E+   +++ G               Q+ SL   H E+LA+AFGLIST 
Sbjct: 823 HPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTP 882

Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           E +++ I  NLR+C DCH+  K  S++  REIV+RDN RFH F+ G CSC+DYW
Sbjct: 883 ETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 195/397 (49%), Gaps = 13/397 (3%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           + ++CG L +    F K+  R+V+SWN MIS Y+S   ++E L L   M  EGV+P+ +T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V+++++    R+L  G  +H    E     +  +   L++MY KCG + +AQ +    E
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVF--EE 118

Query: 256 IDEVDVVLWTTLVSGY-VKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFK 310
           + E +VV W  ++  Y ++      A  LF  M    V+ N+I++  +++ +++ DA  K
Sbjct: 119 MAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRK 178

Query: 311 YK---SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367
            K   SC         ++V+  +        ++  A  +F  +  ++V  W S+I+AY++
Sbjct: 179 GKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSI 238

Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
           +  + +A  +F  M++ G + D+VTF+++L AC +   +  G       S   + +  + 
Sbjct: 239 SERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISET-SFELDLF 297

Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
               ++ +  R    E++A     M    ++  WS+++ A   H +   A   F+ + + 
Sbjct: 298 VGTALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGHCGEALRYFRMMQQE 356

Query: 488 DPL-NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
             L N    + L N +     L+++SRI + + + GL
Sbjct: 357 GILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 393


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/528 (34%), Positives = 293/528 (55%), Gaps = 36/528 (6%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE---------GVSPDEVTMVS 198
            LFD++P+R V+SW ++I+        R+ + +  ++  E         GV  D V +  
Sbjct: 34  HLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLLGC 93

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++SA +KL    + + +H  + +   +    + N L+D Y K G++G A+   G   ++E
Sbjct: 94  VVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAKVFDG---MNE 150

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-----SGMLNQDAEFKYKS 313
            D   W ++++ Y ++    EA  +F +MV+     +  +I     SG L       ++ 
Sbjct: 151 SDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGKCIHHQV 210

Query: 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
                 L   ++V   I       + +E+A   F  +  KNV  WT+++A Y M G A++
Sbjct: 211 IKM--DLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKE 268

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
           A+++F +M  +G KP+ +TF+++L+ACSH G++ EG  + ++    + ++P ++HY CMV
Sbjct: 269 AMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYLCMV 328

Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
           DLLGRAG+L      I  M   PD  IW SLL ACR H+NV+L E + + L E D  N G
Sbjct: 329 DLLGRAGYL-XCYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXSNCG 387

Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
            +VLL+NIYA AGR D++ R+R+ ++  GL K  G+S++E  G +H    GD  +P  E+
Sbjct: 388 YYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQHEK 447

Query: 554 IYLMLNEIEMTLQQQGL-------------QETSL---QHRERLAVAFGLISTSEKTTIR 597
           IY  L++  + LQ+ G              +E  +    H E+LAVAFG++++   + I 
Sbjct: 448 IYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGSIIH 507

Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I+ NLRICGDC+  +K+  +V NREIV+RD+ RFH F+ G CSC DYW
Sbjct: 508 IIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 115/275 (41%), Gaps = 47/275 (17%)

Query: 134 TVLLNKCGKLKE--VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VS 190
             L++   K  E  V ++FD +   D   WN++I+ Y   G+  E   +   M   G   
Sbjct: 127 NTLMDAYAKFGEMGVAKVFDGMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFR 186

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
            + V M   +S       L++GK +H  + +  ++ S  +   +VD+Y KC ++  A+K 
Sbjct: 187 YNAVIMDXGLSGA-----LQLGKCIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKA 241

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQD 306
               ++  V    WT +V+GY       EA  +F +M    V+ N I++  +++      
Sbjct: 242 FDCMKVKNVKS--WTAMVAGYGMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLA------ 293

Query: 307 AEFKYKSCASIGALYHGI-WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365
                 +C+  G L  G  W       N++  +           I E  +  +  ++   
Sbjct: 294 ------ACSHAGMLKEGXHWF------NRMKCEF----------IVEPGIEHYLCMVDLL 331

Query: 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
             AG+    +  +  ++E   KPD + + +LL AC
Sbjct: 332 GRAGY----LXCYGLIKEMNAKPDFIIWGSLLGAC 362


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 263/491 (53%), Gaps = 45/491 (9%)

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
           ++P      SL+ +    + ++ GK LH  +  +       +   LV++Y  C  +  A+
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
            L  R  I + ++ LW  L+ GY  +   + A +L+ +M +  L+          N    
Sbjct: 131 LLFDR--IPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVP--------DNFTFP 180

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEK 353
           F  K+CA++ A+ HG  +H ++ +     D                +  A ++F +I  +
Sbjct: 181 FVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR 240

Query: 354 NVYL---WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
           +  L   W ++I  YAM GHA +A+DLF EM     KPD +TF+ +LSACSHGGL++EG+
Sbjct: 241 DAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGW 299

Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
            F     R Y I P +QHY CMVDLLG +G L+E+ N I  M + PD  +W +LL +C+ 
Sbjct: 300 MFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKI 359

Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
           H NV+L E A + L E +P + G +V+L+NIYA+AG+ + ++++R  + D  LKK +  S
Sbjct: 360 HANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACS 419

Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS---------------- 574
            IE    VH F SGD  +P S+EIY  L  +   +++ G   ++                
Sbjct: 420 WIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMV 479

Query: 575 LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
             H ERLA+AFGLIST   T + I  NLRIC DCH  +K  S++  REI +RD  R+H F
Sbjct: 480 CSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHF 539

Query: 635 QGGQCSCRDYW 645
           + G CSC DYW
Sbjct: 540 KDGVCSCGDYW 550



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 16/203 (7%)

Query: 74  QISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR 133
           Q+  Q+F++ +   +  +   +        I+    I E+ +  G+ ++VF +   L+  
Sbjct: 162 QLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVF-VGAALID- 219

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRD---VISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
             +  KCG +    ++FDK+  RD   V+SWN MI+ Y   G   E L L  +M      
Sbjct: 220 --MYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMN-RVAK 276

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEE--STMKISGSLLNY--LVDMYFKCGKIGE 246
           PD +T V ++SA +    LE G    +F E      KI  ++ +Y  +VD+    G++ E
Sbjct: 277 PDHITFVGVLSACSHGGLLEEG---WMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDE 333

Query: 247 AQKLLGRYEIDEVDVVLWTTLVS 269
           A  L+ + ++   D  +W  L++
Sbjct: 334 AYNLIMQMKVLP-DSGVWGALLN 355


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 269/493 (54%), Gaps = 44/493 (8%)

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M  EG+ P++ T  ++++A+  +   EM    H    +     S S+   L+D Y K G 
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFEM----HAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           + EA K+  R  I+E D+V W+ ++ GY +  + + A R+F +M +  +       SG++
Sbjct: 57  VDEASKVFQR--IEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGII 114

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS---------------IDNIELAYDLFS 348
           N  A       A    +  G  +H +  K++ +                 +IE A+++F 
Sbjct: 115 NACA-------APTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFK 167

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
              E+++  W S+I+ YA  G+ +KA+++F EM+    + D VTFI ++SAC+H GL +E
Sbjct: 168 RQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANE 227

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G  +     + ++I+P+M+HY CMVDL GRAG L ++   I  MP P   ++W +LL A 
Sbjct: 228 GQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAAS 287

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
             H+N+++ + A   L    P N  ++VLL N+YA  G   + +++R  + +  +KK  G
Sbjct: 288 CIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAG 347

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSL------------ 575
           YS IE     + F +GD+ +P S +IY  L E+   L+  G Q +TS             
Sbjct: 348 YSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEA 407

Query: 576 ---QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
              QH ERLA+AFGLI T   T ++IV NLR+CGDCHS +K+ S +  R+IV+RD+ RFH
Sbjct: 408 ILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFH 467

Query: 633 RFQGGQCSCRDYW 645
            F+GG CSC DYW
Sbjct: 468 HFKGGLCSCGDYW 480



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/266 (18%), Positives = 109/266 (40%), Gaps = 51/266 (19%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           +  FE +H+  I  N ++ P + T + +  V  G++  A ++ ++ +E +I  W+++I  
Sbjct: 23  VSPFE-MHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICG 81

Query: 114 QLINGYPQEVFAIYLYLVTRTV---------LLNKC------------------------ 140
               G  +    I++ +    +         ++N C                        
Sbjct: 82  YAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNN 141

Query: 141 ---------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
                          G ++   ++F +   RD++SWN++IS Y   G  R+ L +  +M 
Sbjct: 142 ALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQ 201

Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
            + +  D VT + +ISA T       G+    + +++  ++      + +VD+Y + G +
Sbjct: 202 RQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGML 261

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSG 270
            +A +++           +W TL++ 
Sbjct: 262 VKAMEIINEMPF-PASANVWRTLLAA 286


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 187/590 (31%), Positives = 309/590 (52%), Gaps = 74/590 (12%)

Query: 44  VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
           V+ +  +C++I + ++IH+  I ++L     I T++    +    L YA Q+  Q  EP+
Sbjct: 9   VLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPD 68

Query: 104 IKIWNSIIEN--------------------QLING----YP---------------QEVF 124
             I+N++I                      Q I G    YP               +EV 
Sbjct: 69  GFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVH 128

Query: 125 AIYLYL------VTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
            + + +        ++ LLN    CG++    Q+FD+   +DV+ WN +I+ Y   GM  
Sbjct: 129 GVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVL 188

Query: 176 EGLGLLSKM-GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY- 233
           +  G+  +M   + V P+E TM+ LI A  + ++L++G+ +H ++ +  +   G  L   
Sbjct: 189 DSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAA 248

Query: 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           L+++Y KCG +  A+KL    EI E + V+W +L+ GY +    +E   L  EM   NL 
Sbjct: 249 LINLYVKCGYLDGARKLFD--EIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLK 306

Query: 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI--------------SIDN 339
                +SG+L+        +CA +GA   G WVH + +K  I                  
Sbjct: 307 PDRFTVSGVLS--------ACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGF 358

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           I  A  +F +++E+NV  W ++++ YA  G A+ AI+LF EM E+G +PD +TF+A+L A
Sbjct: 359 IGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHA 418

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           C+H GLV+ G  +     + Y I P+++HYGCMVDLLGRAG L+E+   I  M + P+V 
Sbjct: 419 CAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVV 478

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           +W +LL AC  H N+++ E A  H+ + + ++ G++V+LAN+YA A R + +  +R  + 
Sbjct: 479 VWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMV 538

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           + G+ K  G S+IE G  VH+F   D  +P SEEIY +L+E+   L+  G
Sbjct: 539 EKGICKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAG 588


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 184/540 (34%), Positives = 293/540 (54%), Gaps = 57/540 (10%)

Query: 148 QLFDKLPN-RDVISWNTMISCYT-----SMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
           Q+FD++P+  D + +NT++  Y      S       + +  +M  EGV+PD  T VSL+ 
Sbjct: 82  QVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLK 141

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNY----LVDMYFKCGKIGEAQKLLGRYEID 257
           A    R  E G+  H       +K+  +  +Y    L++MY +CG    A+ + G    D
Sbjct: 142 ACAAARAGEEGRQAHAL----AVKLGAADHDYVRPTLINMYAECGDARAARVMFG--GTD 195

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
              VV +  +++  V+S+   EA  LF EM  + L   ++ +  +L+        +CA +
Sbjct: 196 GGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLS--------ACALL 247

Query: 318 GALYHGIWVHVYIKKNQIS---------ID------NIELAYDLFSEISEKNVYLWTSVI 362
           GAL  G WVH Y++K  +          ID      ++E A D+F  +  K+   W+ +I
Sbjct: 248 GALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMI 307

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
            AYA  G+ ++AI LF EM++ G KPD +TF+ +L ACSH GLV EG  +     + + I
Sbjct: 308 VAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM-KDHGI 366

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
            P ++HYGC+ DLL R+G LE +  FI  +PI P   +W +LL AC  H + +L +  F+
Sbjct: 367 VPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFE 426

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            + + D  + G +V+ +N+ A  G  ++M+ +R  + + G+ K  G S IE    VH+F 
Sbjct: 427 RILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFF 486

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQ--------------QQGLQETSLQ---HRERLAVAF 585
           +GD  +P S+E   M++E+   L+              + G +E ++    H E+LA+AF
Sbjct: 487 AGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAF 546

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GL++T+   T+R+V NLR+C DCHS  K+ S V+NR I++RD  RFH F+ G CSC DYW
Sbjct: 547 GLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 133 RTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           R  L+N   +CG  +    +F       V+S+N MI+         E L L  +M  +G+
Sbjct: 171 RPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGL 230

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
            P  VT++S++SA   L  LE+G+ +H ++ +  +     +   L+DMY KCG + +A  
Sbjct: 231 KPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAID 290

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           +     ++  D   W+ ++  Y       EA  LF+EM +  +    +   G+L
Sbjct: 291 VF--QGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVL 342


>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 295/559 (52%), Gaps = 87/559 (15%)

Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI--------SCYTSMGMYREGLGLLSKM 184
           + ++ +  G L    QLFD++P  DV  +NTMI        S + SM ++      LS +
Sbjct: 28  KVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIF------LSMV 81

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
              G  P+  T V +  A      +  G+ + +   +  ++ +  + N ++ MY   G +
Sbjct: 82  RVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLV 141

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
            EA+++   + +D+ D+  W  ++ GYV S E   A+ +FDEM ER+++SWT +I+G + 
Sbjct: 142 DEARRVFD-WSLDQ-DLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQ 199

Query: 305 ----QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA--YDLFSEISEKN---- 354
               ++A   +       AL  G W+HVYI K++I ++   LA   D++++  E +    
Sbjct: 200 VGCFKEALDLFHEMLQTVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAK 259

Query: 355 -----------VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
                      V+ W ++I  YAM G +++AIDLF +M+     P++VTF+ALL+ACSHG
Sbjct: 260 VFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHG 319

Query: 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
            LV+EG                                  E+   + +MP+ PD +IW +
Sbjct: 320 KLVEEG---------------------------------REAEETVFNMPMAPDATIWGA 346

Query: 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523
           LL ACR H++++  +   K + E D  + G HVLLAN+Y+ +G+ D+   +R K+   G 
Sbjct: 347 LLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGR 406

Query: 524 KKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------------- 570
           KK  G S IE  G  H+F  GD  +P ++++YL L+E+   L+  G              
Sbjct: 407 KKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDD 466

Query: 571 ---QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
              +ET+L +H E+LA+AFGLI+T   T IRIV NLR+C DCH   K  S+VY REI++R
Sbjct: 467 EEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVR 526

Query: 627 DNGRFHRFQGGQCSCRDYW 645
           D  R+H F+ G CSC+DYW
Sbjct: 527 DRIRYHHFKDGFCSCKDYW 545



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 130/301 (43%), Gaps = 71/301 (23%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQGDEPEIKIWNSII 111
           +++ ++ H+HLITT L+  P  + ++ + L+ +  G L YA Q+  Q  +P++ I+N++I
Sbjct: 1   MNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMI 60

Query: 112 E-NQLINGYPQEVFAIYLYLV----------TRTVLLNKCGK------------------ 142
           + + +I         I+L +V          T   +   CG                   
Sbjct: 61  KAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIG 120

Query: 143 --------------------LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
                               + E  ++FD   ++D+ SWN MI  Y   G     +G   
Sbjct: 121 LESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGE----IGRAK 176

Query: 183 KMGAEGVSPDEVTMVSLISARTKLR----------------DLEMGKNLHLFLEESTMKI 226
           +M  E    D V+  ++I+   ++                  L+ G+ +H+++++S +K+
Sbjct: 177 EMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTVALDQGRWIHVYIDKSEIKM 236

Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
           +  LL  L+DMY KCG+I  A K+       ++ V  W  ++ GY    +  EA  LF++
Sbjct: 237 NERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQ 296

Query: 287 M 287
           M
Sbjct: 297 M 297


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 289/541 (53%), Gaps = 56/541 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           +  KCGK+    ++F+++ ++++++WN MI      GM  +          + V PD +T
Sbjct: 269 MYGKCGKVDYAERVFNRIYSKNIVAWNAMIG-----GMQED----------DKVIPDVIT 313

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           M++L+ + ++   L  GK++H F           L   LVDMY KCG++  A+ +    +
Sbjct: 314 MINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFN--Q 371

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           ++E ++V W T+V+ YV++ +  EA ++F  ++   L    + I+ +L   AE   +S  
Sbjct: 372 MNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRS-- 429

Query: 316 SIGALYHGIWVHVYIKK----------NQI-----SIDNIELAYDLFSEISEKNVYLWTS 360
                  G  +H YI K          N I        +++ A + F  +  K+V  W +
Sbjct: 430 ------EGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNT 483

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I AYA+ G  + +I  F EM   G KP+  TF++LL+ACS  GL+DEG+ F +     Y
Sbjct: 484 MIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEY 543

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            I P ++HYGCM+DLLGR G+L+E+  FI  MP+ P   IW SLL A R H +V LAE A
Sbjct: 544 GIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELA 603

Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
            +H+      N G +VLL+N+YA+AGR +D+ RI+  +++ GL K +G S+++  G    
Sbjct: 604 ARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSES 663

Query: 541 FTSGDIFNPHSEEIY----LMLNEIEMTLQQQGLQE------------TSLQHRERLAVA 584
           F + D  + H+  IY    ++L +I   +    L +            +   H  +LA+ 
Sbjct: 664 FINQDRSHAHTNLIYDVLDILLKKIGEDIYLHSLTKFRPLDVAKKRGNSPEYHSVKLAIC 723

Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
           FGLIST+    + +  N RIC DCH   K  SQV  REIV+ D   FH F+ G CSCRDY
Sbjct: 724 FGLISTAIGNPVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDY 783

Query: 645 W 645
           W
Sbjct: 784 W 784



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 199/462 (43%), Gaps = 60/462 (12%)

Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
           G +     +F+K+ + D   WN +I  YT+ G+++E +    +M  EG+  D  T   +I
Sbjct: 72  GLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVI 131

Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
            A  +L  L +G+ +H  L +    +   + N+L+DMY K G I  A+K+    E+   D
Sbjct: 132 KACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFD--EMPVRD 189

Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVE-RNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           +V W ++VSGY    +   +   F EM+   N      MIS +          +C+    
Sbjct: 190 LVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISAL---------GACSIEHC 240

Query: 320 LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
           L  G+ +H  + ++++ +D                ++ A  +F+ I  KN+  W      
Sbjct: 241 LRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWN----- 295

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYN 421
            AM G  Q         E+    PD +T I LL +CS  G + EG   + F  +K  +  
Sbjct: 296 -AMIGGMQ---------EDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFL-- 343

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
             P +     +VD+ G+ G L+ + +    M     VS W++++ A   ++  K A   F
Sbjct: 344 --PYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVS-WNTMVAAYVQNEQYKEALKMF 400

Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
           +H+   +PL   A + +A++      L   S  + ++    +K  LG +       V+ +
Sbjct: 401 QHIL-NEPLKPDA-ITIASVLPAVAELASRSEGK-QIHSYIMKLGLGSNTFISNAIVYMY 457

Query: 542 -------TSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ 576
                  T+ + F+    +  +  N + M     G   TS+Q
Sbjct: 458 AKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQ 499



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 38/175 (21%)

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDA-EFKY-------- 311
           T  + G+V+S     A  +F++M   +   W ++I G  N    Q+A +F Y        
Sbjct: 62  TRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIR 121

Query: 312 ----------KSCASIGALYHGIWVH-----------VYIKKNQI----SIDNIELAYDL 346
                     K+C  + AL  G  VH           VY+    I     I  IELA  +
Sbjct: 122 SDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKV 181

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
           F E+  +++  W S+++ Y + G    ++  F EM   G K D+   I+ L ACS
Sbjct: 182 FDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACS 236


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 299/546 (54%), Gaps = 50/546 (9%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS-PDEV 194
           L  K G++ E  Q F+++P  D+I W+ MIS Y      +E L L  +M    V  P+  
Sbjct: 249 LYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNF 308

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-GR 253
           T  S++ A   L  L +G  +H  + +  +  +  + N L+D+Y KCG+I  + KL  G 
Sbjct: 309 TFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGS 368

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
            E +EV    W T++ GYV+  + ++A  LF  M+  ++    +  S +L        ++
Sbjct: 369 TEKNEV---AWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVL--------RA 417

Query: 314 CASIGALYHGIWVH------VYIKKNQIS------------IDNIELAYDLFSEISEKNV 355
            AS+ AL  G  +H      +Y K + ++            ID+  L +D   ++ +++ 
Sbjct: 418 SASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFD---KMDKQDE 474

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             W ++I  Y++ G   +A++LF  M+++ +KP+++TF+ +LSACS+ GL+D+G      
Sbjct: 475 VSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKS 534

Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
             + Y I+P ++HY CMV LLGR+G  +E+   I  +P  P V +W +LL AC  H+N+ 
Sbjct: 535 MLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLD 594

Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
           L +   + + E +P +D  HVLL+N+YA A R D+++ +R  ++   +KK+ G S +E  
Sbjct: 595 LGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQ 654

Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---------------QHRE 579
           G VH FT GD  +P+ + I+ ML  +    +  G + + S+                H E
Sbjct: 655 GVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSE 714

Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
           RLA+AFGLI      +IRI+ NLRIC DCH+ +K+ S++  REIVIRD  RFH F+ G C
Sbjct: 715 RLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVC 774

Query: 640 SCRDYW 645
           SC DYW
Sbjct: 775 SCGDYW 780



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 191/408 (46%), Gaps = 40/408 (9%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG +    Q+FD +  +D++SW  M++CY     + + L L  +M   G  P+  T+ + 
Sbjct: 152 CGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAA 211

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY----LVDMYFKCGKIGEAQKLLGRYE 255
           + +   L   ++GK++H       +K+      Y    L+++Y K G+I EAQ+     E
Sbjct: 212 LKSCNGLEAFKVGKSVH----GCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFE--E 265

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN-LISWTLMISGMLNQDAEFKYKSC 314
           + + D++ W+ ++S Y +S++  EA  LF  M + + ++      + +L        ++C
Sbjct: 266 MPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVL--------QAC 317

Query: 315 ASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVYLWT 359
           AS+  L  G  +H  + K    + + + N           IE +  LF+  +EKN   W 
Sbjct: 318 ASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWN 377

Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR- 418
           ++I  Y   G  +KA++LF  M     +P +VT+ ++L A +    ++ G    S   + 
Sbjct: 378 TIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKT 437

Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
           +YN    + +   ++D+  + G ++++      M    +VS W++L+     H     A 
Sbjct: 438 MYNKDSVVAN--SLIDMYAKCGRIDDARLTFDKMDKQDEVS-WNALICGYSIHGLGMEAL 494

Query: 479 HAFKHLTETDP-LNDGAHVLLANIYAKAGRLDD-MSRIRMKLRDMGLK 524
           + F  + +++   N    V + +  + AG LD   +  +  L+D G++
Sbjct: 495 NLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIE 542



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 134/336 (39%), Gaps = 61/336 (18%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P +  +    +SC+ ++ F+    +H   +     RD  +   + E    +G++  AQQ 
Sbjct: 203 PNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQF 262

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEV-------------------FAIYLYLVTRTVL 136
             +  + ++  W+ +I     +   +E                    FA  L      VL
Sbjct: 263 FEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVL 322

Query: 137 LN-----------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISC 167
           LN                             KCG+++   +LF     ++ ++WNT+I  
Sbjct: 323 LNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVG 382

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
           Y  +G   + L L S M    + P EVT  S++ A   L  LE G+ +H    ++     
Sbjct: 383 YVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKD 442

Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
             + N L+DMY KCG+I +A+    +  +D+ D V W  L+ GY       EA  LFD M
Sbjct: 443 SVVANSLIDMYAKCGRIDDARLTFDK--MDKQDEVSWNALICGYSIHGLGMEALNLFDMM 500

Query: 288 VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
            + N     L   G+L+        +C++ G L  G
Sbjct: 501 QQSNSKPNKLTFVGVLS--------ACSNAGLLDKG 528



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 159/357 (44%), Gaps = 31/357 (8%)

Query: 128 LYLVTRTVLLNK---CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
           L L  + +LLN     G L++  +LFD++P  + +S+ T+   ++    ++    LL ++
Sbjct: 36  LDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRL 95

Query: 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
             EG   ++    +L+     +   +   ++H ++ +   +    +   L+D Y  CG +
Sbjct: 96  FREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNV 155

Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304
             A+++         D+V WT +V+ Y ++   +++  LF +M           IS  L 
Sbjct: 156 DAARQVFDGIYFK--DMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAAL- 212

Query: 305 QDAEFKYKSCASIGALYHGIWVH------VYIKKNQISIDNIEL---------AYDLFSE 349
                  KSC  + A   G  VH       Y +   + I  +EL         A   F E
Sbjct: 213 -------KSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEE 265

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDE 408
           + + ++  W+ +I+ YA +  +++A++LF  M ++    P+  TF ++L AC+   L++ 
Sbjct: 266 MPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNL 325

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           G    S   +V  +   +     ++D+  + G +E S    T      +V+ W++++
Sbjct: 326 GNQIHSCVLKV-GLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVA-WNTII 380



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 126/290 (43%), Gaps = 29/290 (10%)

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D  +  +++    + RD   GK+LH  + +    +     N L++ Y   G + +A KL 
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNE----RDEARRLFDEMVERNLISWTLMISGMLNQDA 307
              E+   + V + TL  G+ +S++    R    RLF E  E N   +T ++  +++ D 
Sbjct: 62  D--EMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDL 119

Query: 308 EFKYKSCASIGALYH--GIWVHVYIKKNQIS----IDNIELAYDLFSEISEKNVYLWTSV 361
                +C S+ A  +  G     ++    I       N++ A  +F  I  K++  WT +
Sbjct: 120 A---DTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGM 176

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           +A YA     + ++ LF +M   G +P+  T  A L +C+       G +       V+ 
Sbjct: 177 VACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN-------GLEAFKVGKSVHG 229

Query: 422 IKPKM-----QHYG-CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
              K+      + G  +++L  ++G + E+  F   MP   D+  WS ++
Sbjct: 230 CALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMP-KDDLIPWSLMI 278


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/487 (35%), Positives = 266/487 (54%), Gaps = 40/487 (8%)

Query: 191  PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
            PD  T   LI A  +L  L  G+ LH    ++       + N LV +Y  CG    A K+
Sbjct: 802  PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 861

Query: 251  LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                 +   ++V W ++++ +  +   +E   +F EM+  +       I  +L       
Sbjct: 862  FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLT------ 915

Query: 311  YKSCASIGALYHGIWVHVYIKK------NQISIDNIEL---------AYDLFSEIS-EKN 354
              +CA  GAL  G  VHVY++K      + +S   I+L         A  +F E+   + 
Sbjct: 916  --ACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRT 973

Query: 355  VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
            V  WTS+I   A  G  ++A++LF  ME     P ++T + +L ACSH GLVD+G+ +  
Sbjct: 974  VVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFD 1033

Query: 415  KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
            +    Y I P+++H GCMVDLLGRAG +EE+ ++I +MP+ P+  +W +LL +C  H+ +
Sbjct: 1034 RMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKL 1093

Query: 475  KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
            +L + A++ L E DP + G +VLL+N+YA  G   D+  +R  +    ++K  G+SL+E 
Sbjct: 1094 ELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVEL 1153

Query: 535  GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HR 578
               V++F  GD  +P SE+IY ML EI   L+++G                +ET+L  H 
Sbjct: 1154 RNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHS 1213

Query: 579  ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
            ERLA+AF L+ +     IRI+ NLR+CGDCH    + S+VY+REI++RD  RFH FQGG 
Sbjct: 1214 ERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGA 1273

Query: 639  CSCRDYW 645
            CSC+DYW
Sbjct: 1274 CSCKDYW 1280


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 183/544 (33%), Positives = 278/544 (51%), Gaps = 46/544 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG +     LFD++ N D++++N +IS Y+  GM    + L  ++ A G  P+  T
Sbjct: 256 LYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSST 315

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V++I   +      + + LH F+ ++ +     +   L  +Y +   +  A+ +     
Sbjct: 316 LVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFD--A 373

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + E  +  W  ++SGY ++   + A  LF  M E N+    + IS  L+        +CA
Sbjct: 374 MLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLS--------ACA 425

Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
            +GAL  G WVH  I K ++ ++               +I  A  +F  +  KNV  W +
Sbjct: 426 HLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNA 485

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +I+ Y + G   +A+ L+ +M +    P   TF++++ ACSHGGLVDEG       +  Y
Sbjct: 486 MISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEY 545

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLA 477
            I P ++H  CMVDLLGRAG L E+   I+  P   I P V  W +LL AC  H+N  LA
Sbjct: 546 RITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGV--WGALLGACMVHKNSDLA 603

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           + A + L E D  N G +VLL+N+Y       + + +R + +   L K  G +LIE G  
Sbjct: 604 KLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDR 663

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ---ETSLQ-------------HRERL 581
            H F +GD  +P SE IY  L  +   + + G Q   E +L              H E+L
Sbjct: 664 PHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKL 723

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AFGL+ST   T IRI+ NLR+C DCH+  K  S+V  R IV+RD  RFH F+ G CSC
Sbjct: 724 AIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSC 783

Query: 642 RDYW 645
            DYW
Sbjct: 784 GDYW 787



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 172/388 (44%), Gaps = 41/388 (10%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKL 206
           ++FD +P+ D I WNT+++         E L    +M   G V PD  T+ S + A  + 
Sbjct: 170 KVFDTVPSPDTILWNTLLAGLPG----SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEA 225

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
             + MG+ +H +  +  +     ++  L+ +Y KCG +  AQ L  R  +D  D+V +  
Sbjct: 226 SHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDR--MDNPDLVAYNA 283

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           L+SGY  +   + +  LF E+        +  +  ++   + F ++  A          +
Sbjct: 284 LISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARC--------L 335

Query: 327 HVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
           H ++ K ++  D               ++E A  +F  + EK +  W ++I+ YA  G  
Sbjct: 336 HAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLT 395

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPKMQH 428
           + A+ LF  M+E   +P+ +T  + LSAC+H G +  G   +  +SK+    N+      
Sbjct: 396 EMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMT-- 453

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
              ++D+  + G + E+ +    M     VS W++++     H     A   +K + +  
Sbjct: 454 --ALIDMYAKCGSIAEARSIFDRMDNKNVVS-WNAMISGYGLHGQGAEALKLYKDMLDAR 510

Query: 489 PLNDGAHVLLANIYA--KAGRLDDMSRI 514
            L   +   L+ IYA    G +D+  ++
Sbjct: 511 ILPTSS-TFLSVIYACSHGGLVDEGQKV 537



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 121/281 (43%), Gaps = 49/281 (17%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING- 118
           +H + +   L     + T +       GD+  AQ +  + D P++  +N++I    +NG 
Sbjct: 234 VHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGM 293

Query: 119 --------------------------------YPQEVFAIYLY------------LVTR- 133
                                           +  E+ A  L+            LV+  
Sbjct: 294 VESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTA 353

Query: 134 -TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
            T L  +   ++    +FD +  + + SWN MIS Y   G+    + L   M    V P+
Sbjct: 354 LTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPN 413

Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
            +T+ S +SA   L  L +GK +H  + +  ++++  ++  L+DMY KCG I EA+ +  
Sbjct: 414 PITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFD 473

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
           R  +D  +VV W  ++SGY    +  EA +L+ +M++  ++
Sbjct: 474 R--MDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARIL 512



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 88/203 (43%), Gaps = 40/203 (19%)

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY------- 311
            D  + + L   Y K +  D+AR++FD +   + I W  +++G+   +A   +       
Sbjct: 147 ADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGSEALEAFVRMVDAG 206

Query: 312 ------------------KSCASIGALYHGIWV------HVYIKKNQISI----DNIELA 343
                              S  ++G   HG  V      H ++    +S+     +++ A
Sbjct: 207 RVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSA 266

Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403
             LF  +   ++  + ++I+ Y++ G  + +++LF E+  +G +P+  T +A++   S  
Sbjct: 267 QFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYS-- 324

Query: 404 GLVDEGYDFLSKKSRVYNIKPKM 426
                G++ L++    + +K ++
Sbjct: 325 ---PFGHELLARCLHAFVVKARL 344


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 196/641 (30%), Positives = 316/641 (49%), Gaps = 79/641 (12%)

Query: 73  PQISTQVFEFLVF----TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYL 128
           PQ +T  +  L+      G L  A+++     +  +  W S++   + NG   E   ++ 
Sbjct: 82  PQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFW 141

Query: 129 YL-----VTRTVLLNKC---GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           ++     V+ TV+L      G++ +  +LFD +P +DV++   MI  Y   G   E   L
Sbjct: 142 HMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARAL 201

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYF 239
             +M    V    VT  +++S   +   +++ + L  +  E + +  +  LL Y      
Sbjct: 202 FDEMPKRNV----VTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYT----- 252

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
             G++ EA  L     +  V  V+   ++ G+  + E D+ARR+F  M ER+  +W+ MI
Sbjct: 253 HSGRMREASSLFDAMPVKPV--VVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMI 310

Query: 300 S----------------GMLNQDAEFKYKS-------CASIGALYHGIWVHVYIKKNQIS 336
                             M  +     + S       C S+ +L HG  VH  + +++  
Sbjct: 311 KVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFD 370

Query: 337 ID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
            D               N+  A  +F+    K+V +W S+I  Y+  G  ++A+++F +M
Sbjct: 371 QDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDM 430

Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
             +G  PD VTFI +LSACS+ G V EG +        Y ++P ++HY C+VDLLGRA  
Sbjct: 431 CSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQ 490

Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
           + E+   +  MP+ PD  +W +LL ACR H  + LAE A + L + +P N G +VLL+N+
Sbjct: 491 VNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNM 550

Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI-FNPHSEEIYLMLNE 560
           YA  GR  D+  +R K++   + K  G S IE    VH FT GD   +P    I  ML +
Sbjct: 551 YAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEK 610

Query: 561 IEMTLQQQG--------LQETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRI 604
           +   L++ G        L +   +        H E+LAVA+GL+   E   IR++ NLR+
Sbjct: 611 LGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRV 670

Query: 605 CGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CGDCHS +K+ ++V  REI++RD  RFH F+ G CSC+DYW
Sbjct: 671 CGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 183/395 (46%), Gaps = 33/395 (8%)

Query: 86  TGDLGYAQQIIRQGDEPE--IKIWNSIIENQLINGYPQEVFAIYLYLVTR-TVLLN---- 138
            G L +A+++  +   P   +  WN+++        P+E   ++  +  R TV  N    
Sbjct: 35  NGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLIS 94

Query: 139 ---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
              K G L E  ++FD +P+R+V+SW +M+  Y   G   E   L   M  + V    V 
Sbjct: 95  GHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVM 154

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +  L+    + R  +  K   +  E+  + ++      ++  Y + G++ EA+ L    E
Sbjct: 155 LGGLLQ---EGRVDDARKLFDMMPEKDVVAVTN-----MIGGYCEEGRLDEARALFD--E 204

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + + +VV WT +VSGY ++ + D AR+LF+ M ERN +SWT M+ G  +     + +  +
Sbjct: 205 MPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSG---RMREAS 261

Query: 316 SIGALYHGIWVHVYIKKNQISI-----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
           S   L+  + V   +  N++ +       ++ A  +F  + E++   W+++I  Y   G+
Sbjct: 262 S---LFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGY 318

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430
             +A+ LF  M+  G   +  + I++LS C     +D G    ++  R       +    
Sbjct: 319 ELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVR-SEFDQDLYVAS 377

Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            ++ +  + G+L  +       P+  DV +W+S++
Sbjct: 378 VLITMYVKCGNLVRAKQVFNRFPL-KDVVMWNSMI 411



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 38/289 (13%)

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           S  N +V  YF+  +  EA  LL   ++ + + V W  L+SG++K+    EARR+FD M 
Sbjct: 56  SSWNAMVAAYFEARQPREA--LLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMP 113

Query: 289 ERNLISWTLMISGMLNQ----DAE-----FKYKSCASIGALYHGIWVHVYIKKNQISIDN 339
           +RN++SWT M+ G +      +AE       +K+  S   +  G+          +    
Sbjct: 114 DRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGL----------LQEGR 163

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           ++ A  LF  + EK+V   T++I  Y   G   +A  LF EM     K + VT+ A++S 
Sbjct: 164 VDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEM----PKRNVVTWTAMVSG 219

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG--RAGHLEESANFITSMPIPPD 457
            +  G VD          +++ + P+         LLG   +G + E+++   +MP+ P 
Sbjct: 220 YARNGKVDVA-------RKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKP- 271

Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
           V + + ++     +  V  A   FK + E D   +G    +  +Y + G
Sbjct: 272 VVVCNEMIMGFGLNGEVDKARRVFKGMKERD---NGTWSAMIKVYERKG 317



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 22/208 (10%)

Query: 18  KLVRLGLVPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQIST 77
           +L  LGL  +M+      N  P  + V+ V  S +S+D  +++H+ L+ +   +D  +++
Sbjct: 319 ELEALGLFRRMQREGLALNF-PSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVAS 377

Query: 78  QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV-- 135
            +    V  G+L  A+Q+  +    ++ +WNS+I     +G  +E   ++  + +  V  
Sbjct: 378 VLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPP 437

Query: 136 -------LLNKC---GKLKEVCQLFDKLPNR-----DVISWNTMISCYTSMGMYREGLGL 180
                  +L+ C   GK+KE  +LF+ +  +      +  +  ++          E + L
Sbjct: 438 DDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKL 497

Query: 181 LSKMGAEGVSPDEVTMVSLISA-RTKLR 207
           + KM  E   PD +   +L+ A RT ++
Sbjct: 498 VEKMPME---PDAIVWGALLGACRTHMK 522


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 203/676 (30%), Positives = 315/676 (46%), Gaps = 119/676 (17%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTR-TVLLN------- 138
           G +  A+ I        +  WN+I+     N  P E   ++  +  R T+  N       
Sbjct: 30  GQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYV 89

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           K G + E  ++FDK+P R+V+SW +M+  Y   G+  E   L  +M  + V    V +  
Sbjct: 90  KNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGG 149

Query: 199 LIS------AR-----TKLRDLEMGKNL--------------HLFLEES-------TMKI 226
           LI       AR       ++D+    N+               +F E         T  I
Sbjct: 150 LIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMI 209

Query: 227 SGSLLNYLVDM----------------------YFKCGKIGEAQKLLGRYEIDEVDVVLW 264
           SG  +N  VD+                      Y + G+I EA +L     +  V     
Sbjct: 210 SGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAAC-- 267

Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI----------------SGMLNQDAE 308
             ++ G+  + E  +AR +FD+M E++  +W+ +I                S M  +   
Sbjct: 268 NGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVR 327

Query: 309 FKYKS-------CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
             + S       C S+ +L HG  VH  + ++   +D               ++     +
Sbjct: 328 PNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRV 387

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           F   S K++ +W S+IA YA  G  +KA+++F EM  +G  PD++TFI +LSAC + G V
Sbjct: 388 FDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKV 447

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
            EG +        Y +  K +HY CMVDLLGRAG L E+ N I +MP+  D  +W +LL 
Sbjct: 448 KEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLS 507

Query: 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526
           ACR H+N+ LAE A K L + +P + G ++LL+N+YA   R  D++ +R  +R   + K 
Sbjct: 508 ACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKS 567

Query: 527 LGYSLIEQGGFVHKFT-SGDIFNPHSEEIYLMLNEIEMTLQQQGL------------QET 573
            G S IE    VH FT  G   +P  E I   L ++  +L++ G             +E 
Sbjct: 568 PGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEED 627

Query: 574 SL----QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
            +     H E++AVA+GL+       IR++ NLR+CGDCHS +K+ +QV  REI++RD  
Sbjct: 628 KVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDAN 687

Query: 630 RFHRFQGGQCSCRDYW 645
           RFH F+ G CSCRD+W
Sbjct: 688 RFHHFKDGLCSCRDFW 703



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 142/318 (44%), Gaps = 42/318 (13%)

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           IS   +L  ++  +N+   L+  T+    +  N +V  YF   +  EAQKL  +  + E 
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTV----TSWNAIVAGYFHNKRPAEAQKLFDK--MPER 76

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ----DAEFKY---- 311
           + + W  LVSGYVK+    EAR++FD+M ERN++SWT M+ G + +    +AE  +    
Sbjct: 77  NTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMP 136

Query: 312 -KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
            K+  S   +  G+          I    ++ A  LF  I  K+V   T++I      G 
Sbjct: 137 EKNVVSWTVMLGGL----------IEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGR 186

Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH-- 428
             +A ++F EM +       V + +++S  +    VD          +++ + P      
Sbjct: 187 LSEAREIFDEMPQRNV----VAWTSMISGYAMNNKVDVA-------RKLFEVMPDKNEVT 235

Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
           +  M+    R+G + E+A    +MP+ P V+  + ++     +  V  A   F  + E D
Sbjct: 236 WTAMLKGYTRSGRINEAAELFKAMPVKP-VAACNGMIMGFGLNGEVGKARWVFDQMKEKD 294

Query: 489 PLNDGAHVLLANIYAKAG 506
              DG    L  IY + G
Sbjct: 295 ---DGTWSALIKIYERKG 309



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 89/192 (46%), Gaps = 20/192 (10%)

Query: 39  PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
           P  + ++ V  S +S+D   ++HS L+ ++   D  +S+ +    +  GDL   +++  +
Sbjct: 331 PSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDR 390

Query: 99  GDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKLKEV 146
               +I +WNSII     +G+ ++   ++  +         +T   +L+ C   GK+KE 
Sbjct: 391 FSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEG 450

Query: 147 CQLFDKLPNRDVISWNT-----MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
            ++F+ + ++  +   T     M+      G   E + L+  M  E    D +   +L+S
Sbjct: 451 LEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEA---DAIVWGALLS 507

Query: 202 ARTKLRDLEMGK 213
           A    ++L++ +
Sbjct: 508 ACRTHKNLDLAE 519


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 192/588 (32%), Positives = 306/588 (52%), Gaps = 86/588 (14%)

Query: 51  CSSIDEFERIHSHLITTNLMRDPQISTQVFEFL-VFTGDLGYAQQIIRQGD-EPEIKIWN 108
           C +I   ++IH+HLI + L+ D  + ++V EF     G + YA   + Q D       +N
Sbjct: 15  CKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYN 74

Query: 109 SIIENQLINGYPQEVFAIYLYLV---------TRTVLLNKC------------------- 140
           ++I     +  P+  F +Y  +V         T  V+L  C                   
Sbjct: 75  TLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKM 134

Query: 141 -------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
                              GK     ++FD++  RDV+SW  +IS Y   G++ E + L 
Sbjct: 135 GFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLF 194

Query: 182 SKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241
            KM    V P+  T VS++ A  ++  L MGK +H  + +    I   + N LVDMY KC
Sbjct: 195 LKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKC 251

Query: 242 GKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTL 297
             + EA+KL    E+ + D+V WT+++SG V+  +  ++  LF +M    VE + I  T 
Sbjct: 252 ECLCEARKLFD--ELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTS 309

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIEL 342
           ++S            +CAS+GAL +G WV  YI++  I  D                IE+
Sbjct: 310 VLS------------ACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEM 357

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
           A  +F+ I  +N++ W +++   AM GH  +A+  F  M   G +P++VTF+A+L+AC H
Sbjct: 358 ALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCH 417

Query: 403 GGLVDEGYDFLSKK-SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
            GLV EG  +  +  S+ +N  P+++HYGCM+DLL RAG L+E+  FI +MP+PPDV IW
Sbjct: 418 SGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIW 477

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
            +LL AC+ + NV+L++    HL E    + G +VLL+NIYA   R DD++R+R  ++D 
Sbjct: 478 GALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDK 537

Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
           G++K  G S+IE  G  H+F  GD  +  +E+I+++LN +   +  +G
Sbjct: 538 GIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLNILANQVYLEG 585


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 284/571 (49%), Gaps = 70/571 (12%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA-----EG 188
            +L +K G++ +  ++FD    R++++WN MIS Y   G  R+ L +  +M       E 
Sbjct: 148 VLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEED 207

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLH--LFLEESTMKISGSLLNYLVDMYFKC-GKIG 245
             PDE T  SL+ A   L     G  +H  + +   +   +  L   L+DMY KC   + 
Sbjct: 208 HQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLP 267

Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
            A ++  R E  + + + WTT++ G+ +  +  EA  LF       + +   ++S ++  
Sbjct: 268 MAMQVFNRLE--QKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGV 325

Query: 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSE 349
            A+F          +  G  VH Y  K    +D + +A  L                F E
Sbjct: 326 FADFAL--------VEQGRQVHCYTVKTPAGLD-VSVANSLIDMYHKCGLTDEAARRFRE 376

Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
           +  +NV  WT++I      GH Q+AI +F EM   G +PD+V ++ALLSACSH GLV+E 
Sbjct: 377 VPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEEC 436

Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
             + S       ++P+ +HY CMVDLLGRAG L E+ + + +MP+ P V +W +LL ACR
Sbjct: 437 RRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACR 496

Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
            H+NV +   A + L   D  N   +V+L+NI+A+AG   +  R+R  +R  GL+KQ G 
Sbjct: 497 VHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGC 556

Query: 530 SLIEQGGFVHKF-TSGDIFNPHSEEIYLMLNEIEMTLQ---------------------- 566
           S +E G   H F   GD  +P + +I  +L ++E T++                      
Sbjct: 557 SWVEVGKEAHFFYGGGDDSHPRAADICCVLRDVERTMRERLGYSPGSSSSSSEAALHDVD 616

Query: 567 QQGLQETSLQHRERLAVAF------------GLISTSEKTTIRIVNNLRICGDCHSFMKV 614
           ++   E+   H ERLAV              G+  T  K  IR+  NLR+CGDCH F K 
Sbjct: 617 EESRAESLRAHSERLAVGLWLLLHHDHDHGEGMGGTKRKEVIRVYKNLRVCGDCHEFFKG 676

Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            S V  R +V+RD  RFHRF+ G CSC+DYW
Sbjct: 677 LSSVVGRVLVVRDANRFHRFEDGVCSCKDYW 707



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 187/409 (45%), Gaps = 43/409 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA-EGVSPDEVTMV 197
           KCG+L+   ++F  +P R+V+SW  ++  +   G  RE L LL  M +   V+P+E T+ 
Sbjct: 51  KCGELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLS 110

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
           + + A   + D+  G  +H     +  +    + N LV +Y K G+IG+A+++       
Sbjct: 111 ASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFR 170

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KS 313
             ++V W  ++SGY  +    ++  +F EM +R             +Q  EF +    K+
Sbjct: 171 --NLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEED-------HQPDEFTFASLLKA 221

Query: 314 CASIGALYHGIWVHVYIKKNQISIDN------------------IELAYDLFSEISEKNV 355
           C S+GA   G  VH  +    +S  +                  + +A  +F+ + +KN 
Sbjct: 222 CGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNA 281

Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
             WT+VI  +A  G  ++A++LF     +G + D     +++   +   LV++G     +
Sbjct: 282 IQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQG-----R 336

Query: 416 KSRVYNIKP----KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
           +   Y +K      +     ++D+  + G  +E+A     +P    VS W++++     H
Sbjct: 337 QVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVS-WTAMINGLGKH 395

Query: 472 QNVKLAEHAFKHL-TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
            + + A H F+ +  E    ++ A++ L +  + +G +++  R    +R
Sbjct: 396 GHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIR 444



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 35/237 (14%)

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +  ++ A      +  G  LH  L +        L N L+DMY KCG++  A ++ G   
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFG--G 64

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS---WTLMISGMLNQDAEFKYK 312
           + E +VV WT L+ G+++  +  E  RL   M   + ++   +TL  S           K
Sbjct: 65  MPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSAS----------LK 114

Query: 313 SCASIGALYHGIWVH-----VYIKKNQISIDNIELAYDLFSEISE----------KNVYL 357
           +C  +G +  G+W+H        + + +  +++ L Y     I +          +N+  
Sbjct: 115 ACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVT 174

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEM-----EETGTKPDQVTFIALLSACSHGGLVDEG 409
           W ++I+ YA AGH + ++ +F EM     EE   +PD+ TF +LL AC   G   EG
Sbjct: 175 WNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREG 231


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 180/596 (30%), Positives = 306/596 (51%), Gaps = 95/596 (15%)

Query: 46  MVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQGDEPE 103
           ++ER C S+ + ++I + +++T L+ +   ++++  F   +   +L Y  +I+ +  E  
Sbjct: 63  ILER-CKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELN 121

Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLV-------------------------------- 131
           +  WN+ I   + +G  +  F +Y  ++                                
Sbjct: 122 VFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVL 181

Query: 132 ----------------TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
                               +L  CG+L     +F+K   RD+++WN+MI+     G+  
Sbjct: 182 GHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAI 241

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235
           E + +  +M AE V P+E+TM+ +IS+ ++++DL +GK  H +++E  ++ +  L N L+
Sbjct: 242 EAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALM 301

Query: 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
           DMY KCG++  A+ L     + +  +V WTT+V GY +    D AR +  ++ E++++ W
Sbjct: 302 DMYVKCGELLTARVLFDN--MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPW 359

Query: 296 TLMISGMLNQD------AEFK-----------------YKSCASIGALYHGIWVHVYIKK 332
             +ISG +         A F                    +C+ +GAL  GIW+H YI++
Sbjct: 360 NAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER 419

Query: 333 NQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           +++SID               NI  A  +F EI ++N   WT+VI   A+ G+AQ A+  
Sbjct: 420 HKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSY 479

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F +M   G  PD++TF+ +LSAC HGGLV+EG  + S+ S  +N+ PK++HY CMVDLLG
Sbjct: 480 FSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLG 539

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAGHLEE+   + +MP+  D ++  +L  ACR + NV++ E     L E DP + G +VL
Sbjct: 540 RAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVL 599

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT----SGDIFNP 549
           LA++Y++A    +    R  + D G++K  G SL+E  G VH+F      G  F P
Sbjct: 600 LASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVLPPYDGQFFYP 655


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 181/544 (33%), Positives = 287/544 (52%), Gaps = 46/544 (8%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
           L +KCG ++    LFD +   D++++N +IS Y+  GM    + L +++   G+ P+  T
Sbjct: 256 LYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSST 315

Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
           +V+LI   +      + + LH F+ +S    +  +   +  ++ +   +  A+K      
Sbjct: 316 LVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFD--T 373

Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
           + E  +  W  ++SGY ++   + A  LF++MV+ N+    + IS  L+        +CA
Sbjct: 374 MPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLS--------ACA 425

Query: 316 SIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTS 360
            +GAL  G W+H           VY+    I +     +I  A  +F+ +  KNV  W +
Sbjct: 426 QLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNA 485

Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
           +IA Y + G   +A+ L+ +M +    P   TF+++L ACSHGGLV+EG+      +  Y
Sbjct: 486 MIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDY 545

Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLA 477
            I P ++H  CMVDLLGRAG L+E+   I+  P   + P V  W +LL AC  H++  LA
Sbjct: 546 AINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGV--WGALLGACMVHKDSDLA 603

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           + A + L E DP N G +VLL+N++    +  + + +R + +   L K  GY+LIE G  
Sbjct: 604 KLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNK 663

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ---ETSLQ-------------HRERL 581
            H F +GD  +P SE IY  L ++   + + G +   E +L              H E+L
Sbjct: 664 PHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKL 723

Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
           A+AFGL+ST   T IRI+ NLR+C DCH+  K  S+V  R IV+RD  RFH F+ G CSC
Sbjct: 724 AIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSC 783

Query: 642 RDYW 645
            DYW
Sbjct: 784 GDYW 787



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/508 (20%), Positives = 217/508 (42%), Gaps = 62/508 (12%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKL 206
           ++FD +P+ D + WNT+++  +      E +   ++M  +G V PD  T+ S++ A  ++
Sbjct: 170 KVFDTVPSPDTVLWNTLLAGLSG----SEAVESFARMVCDGSVRPDATTLASVLPAAAEV 225

Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
            D+ MG+ +H F E+  +     +L  L+ +Y KCG +  A+ L    E  + D+V +  
Sbjct: 226 ADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMME--KPDLVAYNA 283

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY---KSCASIGALYHG 323
           L+SGY  +     +  LF E++   L   +  +  ++   + F +     C     L  G
Sbjct: 284 LISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSG 343

Query: 324 IW----VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
                 V   I      ++++E A   F  + EK +  W ++I+ YA  G  + A+ LF 
Sbjct: 344 FTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFE 403

Query: 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439
           +M +   +P+ +T  + LSAC+  G +  G  +L +     +++P +     ++D+  + 
Sbjct: 404 QMVKLNVRPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKC 462

Query: 440 GHLEESANFITSMP----------------------------------IPPDVSIWSSLL 465
           G + E+     +M                                   + P  + + S+L
Sbjct: 463 GSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVL 522

Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAH--VLLANIYAKAGRLDDMSRIRMKLRDMGL 523
            AC     V+     F+ +T+   +N G      + ++  +AG+L +   +  +     +
Sbjct: 523 YACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAV 582

Query: 524 KKQ-----LGYSLIEQGGFVHKFTSGDIF--NPHSEEIYLMLNEIEMTLQQQGLQETSLQ 576
                   LG  ++ +   + K  S  +F  +P +   Y++L+ +  + +Q    E ++ 
Sbjct: 583 GPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQY--SEAAVV 640

Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRI 604
            +E  A +  L+ T   T I I N   +
Sbjct: 641 RQE--AKSRKLVKTPGYTLIEIGNKPHV 666



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 2/160 (1%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T L  +   ++   + FD +P + + SWN MIS Y   G+    + L  +M    V P+ 
Sbjct: 355 TTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNP 414

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
           +T+ S +SA  +L  L +GK LH  + E  ++ +  ++  L+DMY KCG I EA+++   
Sbjct: 415 ITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFN- 473

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
             +D  +VV W  +++GY    +  EA +L+ +M++ +L+
Sbjct: 474 -TMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLL 512



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 127/325 (39%), Gaps = 71/325 (21%)

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA--EFKYKSC--- 314
           D  + + L   Y   +  D AR++FD +   + + W  +++G+   +A   F    C   
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVESFARMVCDGS 207

Query: 315 ---------------ASIGALYHGIWVHVYIKKNQIS---------------IDNIELAY 344
                          A +  +  G  VH + +K  ++                 ++E A 
Sbjct: 208 VRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESAR 267

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA--------- 395
            LF  + + ++  + ++I+ Y++ G    +++LF E+   G  P+  T +A         
Sbjct: 268 CLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFG 327

Query: 396 --LLSACSHGGLVDEGYDFLSKKS-----------------RVYNIKPK--MQHYGCMVD 434
             LL+ C HG ++  G+   S  S                 + ++  P+  M+ +  M+ 
Sbjct: 328 HDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMIS 387

Query: 435 LLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
              + G  E +      M    + P+    SS L AC     + L +   + +TE D L 
Sbjct: 388 GYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEED-LE 446

Query: 492 DGAHVLLA--NIYAKAGRLDDMSRI 514
              +V+ A  ++YAK G + +  RI
Sbjct: 447 PNVYVMTALIDMYAKCGSISEARRI 471


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 196/675 (29%), Positives = 347/675 (51%), Gaps = 58/675 (8%)

Query: 17  PKLVRLGLVPKMRI--SRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQ 74
           P  +++G      I  S  F +V  VS  +I +  +C  +++ ER+   ++  + +    
Sbjct: 264 PTFIKIGRGIHAVILKSNHFTDV-YVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNT 322

Query: 75  ISTQVFEFLVFTGDLGYAQQIIRQGDEP-EIKIWNSIIEN----QLINGYPQEVFAIYLY 129
           + + + +  +++  + + Q +   G +P ++ + N I  +     L+ G     +AI   
Sbjct: 323 LLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHG 382

Query: 130 LVTRTVLLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
           + +   + N       KC  +K +   F+ +P +D+ISW T+I+ Y     + + L LL 
Sbjct: 383 IDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLR 442

Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
           K+  E +  D + + S++ A + L+  ++ K +H ++ +  +     + N +V++Y +  
Sbjct: 443 KVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA-DILIQNAIVNVYGELA 501

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
            +  A+ +     I+  D+V WT++++  V +    EA  LF+ ++E N+    + +  +
Sbjct: 502 LVDYARHVFE--SINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSV 559

Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLF 347
           L         + A++ +L  G  +H ++ +    ++ +               E A ++F
Sbjct: 560 L--------YAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIF 611

Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
           + + ++++ LWTS+I A  M G  + AIDLF +M +    PD +TF+ALL ACSH GLV 
Sbjct: 612 NYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVV 671

Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
           EG          Y ++P  +HY C+VDLL R+  LEE+ +F+ +MPI P   +W +LL A
Sbjct: 672 EGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGA 731

Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
           CR H N  L E A K L + +  N G +VL++N +A  GR +D+  +R  ++   LKK+ 
Sbjct: 732 CRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKP 791

Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-------------LQETS 574
           G S IE    +H F + D  +P    IYL L +    L+++G              +E  
Sbjct: 792 GCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEK 851

Query: 575 LQ----HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGR 630
            Q    H ERLA+ +GL+ TS+ T +RI  NLRIC DCH+F K+ S++  R +V+RD  R
Sbjct: 852 TQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASR 911

Query: 631 FHRFQGGQCSCRDYW 645
           FH F+ G CSC D+W
Sbjct: 912 FHHFERGLCSCGDFW 926



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 157/349 (44%), Gaps = 16/349 (4%)

Query: 128 LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
           ++L T+ V +  KCG   +  ++FDK+  R + +WN MI    S G Y E + L  +M  
Sbjct: 82  VFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRV 141

Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
            GVS D  T   ++ A    ++  +G  +H    +        + N L+ MY KCG +G 
Sbjct: 142 LGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGG 201

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+ L     +++ D V W +++S +V   E  EA  LF  M E  + S T      L   
Sbjct: 202 ARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQA- 260

Query: 307 AEFKYKSCASIGALYHGI------WVHVYIKKNQISI----DNIELAYDLFSEISEKNVY 356
              +  +   IG   H +      +  VY+    I++      +E A  +F  +  K+  
Sbjct: 261 --CEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCV 318

Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
            W ++++          AI+ F +M+++G KPDQV+ + +++A      +  G +  +  
Sbjct: 319 SWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYA 378

Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
            + + I   M     ++D+ G+   ++   +    MP   D+  W++++
Sbjct: 379 IK-HGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMP-EKDLISWTTII 425



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 136/320 (42%), Gaps = 34/320 (10%)

Query: 207 RDLEMGKNLHL-FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWT 265
           + L  G+ LH  FL+      S  L    V MY KCG   +A K+  +  + E  +  W 
Sbjct: 60  KALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDK--MSERTIFTWN 117

Query: 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325
            ++   V +    EA  L+ EM    +         +L     FK +    +G   HG+ 
Sbjct: 118 AMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKER---RLGCEIHGVA 174

Query: 326 VH------VYIKKNQISI----DNIELAYDLF-SEISEKNVYL-WTSVIAAYAMAGHAQK 373
           V       V++    I++     ++  A  LF S + EK+  + W S+I+A+   G + +
Sbjct: 175 VKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLE 234

Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY---- 429
           A+ LF  M+E G + +  TF++ L AC       EG  F+     ++ +  K  H+    
Sbjct: 235 ALSLFRRMQEVGVESNTYTFVSALQAC-------EGPTFIKIGRGIHAVILKSNHFTDVY 287

Query: 430 --GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
               ++ +    G +E++     SM     VS W++LL     +     A + F+ + ++
Sbjct: 288 VSNALIAMYANCGQMEDAERVFKSMLFKDCVS-WNTLLSGMVQNDMYSDAINHFQDMQDS 346

Query: 488 DPLNDGAHVLLANIYAKAGR 507
               D   VL  N+ A +GR
Sbjct: 347 GQKPDQVSVL--NMIAASGR 364


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 184/540 (34%), Positives = 289/540 (53%), Gaps = 57/540 (10%)

Query: 148 QLFDKLPN-RDVISWNTMISCYT-----SMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
           Q+FD++    D + +NT++  Y      S       + +  +M  EGV+PD  T VSL+ 
Sbjct: 82  QVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSLLK 141

Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNY----LVDMYFKCGKIGEAQKLLGRYEID 257
           A    R  E G+  H       +K+  +  +Y    L++MY +CG    A+   GR + D
Sbjct: 142 ACAAARAGEHGRQAHAV----AVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGD 197

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
              VV +  +++  V+S+   EA  LF EM  + L    + +  +L+        +CA +
Sbjct: 198 --CVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLS--------ACALL 247

Query: 318 GALYHGIWVHVYIKKNQIS---------------IDNIELAYDLFSEISEKNVYLWTSVI 362
           GAL  G W+H Y++K  +                  ++E A  +F  +  ++   W+ +I
Sbjct: 248 GALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMI 307

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
            AYA  G+ ++AI LF EM++ G KPD +TF+ LL ACSH GLV EG  +     + + I
Sbjct: 308 VAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDM-KDHGI 366

Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
            P ++HYGC+ DLL R+G LE +  FI  +PI P   +W +LL AC  H +V+L +  F+
Sbjct: 367 VPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFE 426

Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
            + E D  + G +V+ +N+ A  G  ++M+R+R  + D G+ K  G S IE    VH+F 
Sbjct: 427 RILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFF 486

Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQ--------------QQGLQETSLQ---HRERLAVAF 585
           +GD  +P S+E   M++E+   L+              + G +E ++    H E+LA+AF
Sbjct: 487 AGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAF 546

Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           GL++T+   T+R+V NLR+C DCHS  K  S V+NR I++RD  RFH F+ G CSC DYW
Sbjct: 547 GLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 120/280 (42%), Gaps = 32/280 (11%)

Query: 133 RTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
           R  L+N   +CG  +     F +     V+S+N MI+         E L L  +M A+G+
Sbjct: 171 RPTLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGL 230

Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
           +P  VT++S++SA   L  L++G+ LH ++ +  +     +   LVDMY KCG + +A  
Sbjct: 231 NPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIA 290

Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
           +     ++  D   W+ ++  Y       EA  LF+EM ++ +    +   G+L      
Sbjct: 291 VF--QGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLL------ 342

Query: 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
              +C+  G +  G+     +K + I                   +  +  V    A +G
Sbjct: 343 --YACSHSGLVSEGLRYFDDMKDHGIV----------------PGIKHYGCVTDLLARSG 384

Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
             ++A      ++E    P  + +  LLSAC   G V+ G
Sbjct: 385 QLERAYKF---IDELPINPTPILWRTLLSACGGHGDVELG 421


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 169/514 (32%), Positives = 267/514 (51%), Gaps = 21/514 (4%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           +CG L+    +FD +  ++ ++W  ++  YT        L L ++M  EGV  DE     
Sbjct: 235 RCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSI 294

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++     L D +MGK +H  + +   +   S+   LVD Y KCG I  A +  GR  I E
Sbjct: 295 VLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGR--ISE 352

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ---DAEFKYKSCA 315
            + V W+ L+SG+ +S   ++  ++F  +    ++  + + + +       A     S A
Sbjct: 353 PNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQA 412

Query: 316 SIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371
              A+  G+  ++Y +   +++      ++ A   F  I E +   WT++I+ YA  G+A
Sbjct: 413 HGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNA 472

Query: 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431
            +A+  F  M+  G +P+ VTFIA+L+ACSH GLV E   +L   SR Y +KP + HY C
Sbjct: 473 AEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDC 532

Query: 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491
           M+D   RAG L E+   I  MP  PD   W SLL  C  H ++KL + A ++L   DP +
Sbjct: 533 MIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGD 592

Query: 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHS 551
              ++LL N+Y+  G+ ++   +R  + +  LKK++  S I   G VH+           
Sbjct: 593 TAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHR----------- 641

Query: 552 EEIYLMLNEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
             + L+  E +++      +E  L H E+LA+AFGLIST +   I +  NLR C DCH F
Sbjct: 642 -PVRLLNEEDDVSCSLPARKEQLLDHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEF 700

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            K  S V  R+IV+RD+ RFH F+ G+CSC DYW
Sbjct: 701 GKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 734



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 163/364 (44%), Gaps = 35/364 (9%)

Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
           CG   +V ++FD++  ++++SW  +IS Y   G   + + L S M A G+ P+    +SL
Sbjct: 135 CGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSL 194

Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
           + +      LE+GK +H  +  + +  + ++   + +MY +CG + E  KL+    +D  
Sbjct: 195 LQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWL-EGAKLVFD-GMDAQ 252

Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
           + V WT L+ GY ++ + + A  LF  M    +     + S +L        K C  +  
Sbjct: 253 NAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVL--------KVCCXLED 304

Query: 320 LYHGIWVHVYIKK----NQISI-----------DNIELAYDLFSEISEKNVYLWTSVIAA 364
              G  +H +I K    +++S+            +IE AY  F  ISE N   W+++I+ 
Sbjct: 305 WDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISG 364

Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
           ++ +G  +  I +F  +   G   +   + ++  AC+    ++ G      ++    IK 
Sbjct: 365 FSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMG-----SQAHGDAIKR 419

Query: 425 KMQHY----GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
            +  Y      MV +  + G L+ +     S+   PD   W++++     H N   A   
Sbjct: 420 GLVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGNAAEALGF 478

Query: 481 FKHL 484
           F+ +
Sbjct: 479 FRRM 482



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 157/399 (39%), Gaps = 69/399 (17%)

Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           +  G  +E    L +M    VS    +   L  A  KLR L  G+ +H  L  +    SG
Sbjct: 63  SKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSG 122

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
           S+ N L+ MY  CG   + QK+    E+   ++V W  ++S Y K+ E ++A RLF +M 
Sbjct: 123 SIENCLLRMYCDCGSXIDVQKVFD--EMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQ 180

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI--------SIDN- 339
              +   + +   +L        +SC     L  G  +H ++ + Q+        +I N 
Sbjct: 181 ASGIRPNSAVYMSLL--------QSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNM 232

Query: 340 ------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                 +E A  +F  +  +N   WT ++  Y  A   + A++LF  M   G + D+  F
Sbjct: 233 YVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVF 292

Query: 394 IALLSACS-----------HGGLVDEGY-----------DFLSKKSRVYNI--------K 423
             +L  C            H  +V  G            DF  K   + +         +
Sbjct: 293 SIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISE 352

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHA 480
           P    +  ++    ++G LE+     TS+    +  +  I++S+ +AC    N+ +   A
Sbjct: 353 PNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQA 412

Query: 481 FKHLTETDPLNDG------AHVLLANIYAKAGRLDDMSR 513
                  D +  G          +  +Y+K GRLD   R
Sbjct: 413 -----HGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARR 446



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 114/276 (41%), Gaps = 52/276 (18%)

Query: 46  MVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEP 102
           +V + C  +++++   +IHSH++      +  + T + +F V  GD+  A +   +  EP
Sbjct: 294 IVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEP 353

Query: 103 EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN------------------------ 138
               W+++I     +G  ++   I+  L +  V+LN                        
Sbjct: 354 NDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAH 413

Query: 139 -----------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR 175
                                  KCG+L    + F+ +   D ++W  +IS Y   G   
Sbjct: 414 GDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAA 473

Query: 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN-LHLFLEESTMKISGSLLNYL 234
           E LG   +M + GV P+ VT +++++A +    +   K  L     +  +K +    + +
Sbjct: 474 EALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCM 533

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
           +D Y + G + EA +L+ R    E D + W +L+ G
Sbjct: 534 IDTYSRAGLLXEALELINRMPF-EPDAMSWKSLLGG 568



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 87  GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLL 137
           G L YA++     DEP+   W +II     +G   E    +  +         VT   +L
Sbjct: 439 GRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVL 498

Query: 138 NKC---GKLKEVCQLFDKLPNRD------VISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
             C   G + E  Q    + +RD      +  ++ MI  Y+  G+  E L L+++M  E 
Sbjct: 499 TACSHSGLVAEAKQYLGSM-SRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMPFE- 556

Query: 189 VSPDEVTMVSLISARTKLRDLEMGK--NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
             PD ++  SL+       DL++GK    +LF  +        LL  L   + K  + G 
Sbjct: 557 --PDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGH 614

Query: 247 AQKLLGRYEIDEVDVVLWTTL 267
            +KL+   E+ +     W ++
Sbjct: 615 VRKLMAERELKKEVSCSWISV 635


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 193/698 (27%), Positives = 328/698 (46%), Gaps = 117/698 (16%)

Query: 44  VIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD 100
           ++ V ++C    +++  ++IH ++    L  D  +   +       G L  A+++    +
Sbjct: 237 IVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSME 296

Query: 101 EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVIS 160
                 WNS+I +    G+  + ++++  L +                  D  P  D+++
Sbjct: 297 NRNTSSWNSMISSYAALGFLNDAWSLFYELESS-----------------DMKP--DIVT 337

Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
           WN ++S +   G   E L +L +M  EG  P+  +M S++ A ++L  L MGK  H ++ 
Sbjct: 338 WNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVL 397

Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
            +       +   L+DMY K   +  AQ +     +   ++  W +LVSGY      ++A
Sbjct: 398 RNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFD--NMKNRNIFAWNSLVSGYSFKGMFEDA 455

Query: 281 RRLFDEM---------------------------------------VERNLISWTLMISG 301
            RL ++M                                       +  N++SWT +ISG
Sbjct: 456 LRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISG 515

Query: 302 ML---NQDAEFKY--------------------KSCASIGALYHGIWVHVYIKKNQISID 338
                N     K+                    ++CAS+  L  G  +H    +N    D
Sbjct: 516 SSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIED 575

Query: 339 ---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
                          +++ A+ +F  I  K +  W  +I  +A+ G  ++AI +F EM++
Sbjct: 576 VFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQK 635

Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
            G  PD +TF ALLSAC + GL+ EG+ +       Y I P+++HY CMVDLLGRAG+L+
Sbjct: 636 VGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLD 695

Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
           E+ + I +MP+ PD +IW +LL +CR H+N+K AE A K+L + +P N   ++L+ N+Y+
Sbjct: 696 EAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYS 755

Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
              R +DM  +R  +   G++ +  +S I+    VH F+S +  +P + +IY  L ++  
Sbjct: 756 IFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVS 815

Query: 564 TLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGD 607
            +++ G                 Q+  L H E+LA+ +GLI       IR++ N RIC D
Sbjct: 816 EMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSD 875

Query: 608 CHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           CHS  K  S V  RE+ +RD  RFH F+ G+CSC D+W
Sbjct: 876 CHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 53/393 (13%)

Query: 124 FAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
           F + +YL  R  L+N   +C  L++  Q+F ++PN + + WN  I         ++G+ L
Sbjct: 164 FDLDVYL--RCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVEL 221

Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
             KM    +  +  T+V ++ A  K+  L   K +H ++    +    SL N L+ MY K
Sbjct: 222 FRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSK 281

Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWT 296
            GK+  A+++    E    +   W +++S Y      ++A  LF E+    ++ ++++W 
Sbjct: 282 NGKLELARRVFDSME--NRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 339

Query: 297 LMISG---------MLN-----QDAEFKYKSC---------ASIGALYHGIWVHVYIKKN 333
            ++SG         +LN     Q   FK  S          + +G L  G   H Y+ +N
Sbjct: 340 CLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRN 399

Query: 334 QISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
               D               ++  A  +F  +  +N++ W S+++ Y+  G  + A+ L 
Sbjct: 400 GFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLL 459

Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
            +ME+ G KPD VT+  ++S  +  G   E    L  +++   + P +  +  ++    +
Sbjct: 460 NQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVL-HQTKSLGLTPNVVSWTALISGSSQ 518

Query: 439 AGHLEESANFITSMP---IPPDVSIWSSLLRAC 468
           AG+  +S  F   M    + P+ +  + LLRAC
Sbjct: 519 AGNNRDSLKFFAQMQQEGVMPNSASITCLLRAC 551



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 114/529 (21%), Positives = 199/529 (37%), Gaps = 149/529 (28%)

Query: 60  IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
           IH  LI      D  +   +  F      L  A Q+  +   PE  +WN  I   L +  
Sbjct: 155 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 214

Query: 120 PQEVFAI-------YLYLVTRTV--LLNKCGKLK---------------------EVC-- 147
            Q+   +       +L   T T+  +L  CGK+                       +C  
Sbjct: 215 LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 274

Query: 148 ---------------QLFDKLPNRDVISWNTMISCYTSMGM------------------- 173
                          ++FD + NR+  SWN+MIS Y ++G                    
Sbjct: 275 LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 334

Query: 174 ---------------YREG-LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
                          Y+E  L +L +M  EG  P+  +M S++ A ++L  L MGK  H 
Sbjct: 335 IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHG 394

Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
           ++  +       +   L+DMY K   +  AQ +     +   ++  W +LVSGY      
Sbjct: 395 YVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFD--NMKNRNIFAWNSLVSGYSFKGMF 452

Query: 278 DEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
           ++A RL ++M    ++ +L++W  MISG                    + +W      K 
Sbjct: 453 EDALRLLNQMEKEGIKPDLVTWNGMISG--------------------YAMWG---CGKE 489

Query: 334 QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
            +++ +   +  L       NV  WT++I+  + AG+ + ++  F +M++ G  P+  + 
Sbjct: 490 ALAVLHQTKSLGL-----TPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASI 544

Query: 394 IALLSACSHGGLVDEG----------------------YDFLSKKSRVYN-------IKP 424
             LL AC+   L+ +G                       D  SK S + N       I+ 
Sbjct: 545 TCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQN 604

Query: 425 K-MQHYGCMVDLLGRAGHLEESANFITSMP---IPPDVSIWSSLLRACR 469
           K +  + CM+      G  +E+ +    M    + PD   +++LL AC+
Sbjct: 605 KTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACK 653


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 189/561 (33%), Positives = 283/561 (50%), Gaps = 72/561 (12%)

Query: 142 KLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVS 198
           K+    ++FD +P  +R +  WN MI  Y   GM  E L L S+M AE G +P E TM  
Sbjct: 333 KVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSG 392

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
           ++ A  +       + +H ++ +  M  +  + N L+DMY + G++  A+++     ID 
Sbjct: 393 VLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAM--IDP 450

Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM---------------------VERNLISWTL 297
            DVV W TL++G V      EA +L  EM                     +  N+   TL
Sbjct: 451 RDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTL 510

Query: 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIEL 342
           +               CA++ A   G  +H Y  ++ +  D                +  
Sbjct: 511 L-------------PGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAA 557

Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACS 401
           +  +F  +  +NV  W  +I AY M G   +A+ LF EM   G   P++VTFIA L+ACS
Sbjct: 558 SRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACS 617

Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSI 460
           H GLVD G +      R + +KP    + C+VD+LGRAG L+E+ + ITSM P    VS 
Sbjct: 618 HSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSA 677

Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
           WSSLL ACR H+NV+L E A + L E +P     +VLL NIY+ AG  D    +R+++R 
Sbjct: 678 WSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRR 737

Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL---- 575
            G+ K+ G S IE  G +H+F +G+  +P S E++  ++ +   ++++G   +TS     
Sbjct: 738 QGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHD 797

Query: 576 -----------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
                       H E+LA+AFGL+       IR+  NLR+C DCH   K  S++  R+IV
Sbjct: 798 VDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIV 857

Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
           +RD  RFH F+ G CSC DYW
Sbjct: 858 LRDVRRFHHFRDGSCSCGDYW 878



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 43/344 (12%)

Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216
           DV++WNTMIS     G   E + +L  M + GV PD VT  S + A ++L  L +G+ +H
Sbjct: 246 DVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMH 305

Query: 217 -LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
            + L+++ +  +  + + LVDMY    K+  A+++          + +W  ++ GY ++ 
Sbjct: 306 AVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAG 365

Query: 276 ERDEARRLFDEM-VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
             +EA  LF  M  E         +SG+L         +CA          +H Y+ K  
Sbjct: 366 MDEEALELFSRMEAEAGCAPSETTMSGVL--------PACARSEGFAGKEAMHGYVVKRG 417

Query: 335 IS---------------IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379
           ++               +  +++A  +F+ I  ++V  W ++I    + GHA +A  L  
Sbjct: 418 MAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVT 477

Query: 380 EME------------ETGTK----PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
           EM+            E G      P+ +T + LL  C+       G +      R + ++
Sbjct: 478 EMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVR-HALE 536

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
             +     +VD+  + G L  S      +P   +V  W+ L+ A
Sbjct: 537 SDIAVGSALVDMYAKCGCLAASRAVFDRLP-RRNVITWNVLIMA 579



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 157/370 (42%), Gaps = 61/370 (16%)

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRDLE---M 211
           RD +S+N++IS       +   L  L  M AEG       T+VS++ A + L   +   +
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 212 GKNLHL------FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL----GRYEIDEVDV 261
           G+  H       FL+E   +      N L+ MY + G + +AQ L       +     DV
Sbjct: 191 GREAHAFALKRGFLDEGRERFP---FNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDV 247

Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321
           V W T++S  V+     EA  +  +MV   +    +  +  L         +C+ +  L 
Sbjct: 248 VTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASAL--------PACSRLEMLA 299

Query: 322 HGIWVHVYIKKNQISIDNIELA-------------------YDLFSEISEKNVYLWTSVI 362
            G  +H  + K+     N  +A                   +D+  E S + + +W ++I
Sbjct: 300 LGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPS-RQLGMWNAMI 358

Query: 363 AAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS-RVY 420
             YA AG  ++A++LF  ME E G  P + T   +L AC+      EG  F  K++   Y
Sbjct: 359 CGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACAR----SEG--FAGKEAMHGY 412

Query: 421 NIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
            +K  M         ++D+  R G + + A  I +M  P DV  W++L+  C    +   
Sbjct: 413 VVKRGMAGNRFVQNALMDMYARLGEM-DVARRIFAMIDPRDVVSWNTLITGCVVQGH--- 468

Query: 477 AEHAFKHLTE 486
           A  AF+ +TE
Sbjct: 469 AAEAFQLVTE 478



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 2/132 (1%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMV 197
           KCG L     +FD+LP R+VI+WN +I  Y   G+  E + L  +M A G  +P+EVT +
Sbjct: 551 KCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFI 610

Query: 198 SLISARTKLRDLEMGKNL-HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
           + ++A +    ++ G  L H    +  +K +  L   +VD+  + G++ EA  ++   E 
Sbjct: 611 AALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEP 670

Query: 257 DEVDVVLWTTLV 268
            E  V  W++L+
Sbjct: 671 GEQQVSAWSSLL 682



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG------------- 185
           + G++    ++F  +  RDV+SWNT+I+     G   E   L+++M              
Sbjct: 434 RLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTE 493

Query: 186 ---AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
              A    P+ +T+++L+     L     GK +H +     ++   ++ + LVDMY KCG
Sbjct: 494 EGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCG 553

Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            +  ++ +  R  +   +V+ W  L+  Y      DEA  LFDEM 
Sbjct: 554 CLAASRAVFDR--LPRRNVITWNVLIMAYGMHGLGDEAVALFDEMA 597


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 176/552 (31%), Positives = 286/552 (51%), Gaps = 49/552 (8%)

Query: 129 YLVTRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
           Y+  R +L++ KCG + +  +LFD++P R+++SWNT+IS    +G + E   L   M  E
Sbjct: 11  YMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEE 70

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
                  T   +I A   L  + +G+ LH    +  +     +   L+DMY KCG I +A
Sbjct: 71  FSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDA 130

Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGML 303
           + +    E+ E   V W T+++GY      +EA  ++ EM    V+ +  ++++++    
Sbjct: 131 RFVF--EEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIV---- 184

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
                   + CA + ++ H    H  + ++    D                IE A  +F 
Sbjct: 185 --------RICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFD 236

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           +++ KNV  W ++I  Y   G   +A++LF +M +    P+ +TF+A+LSACSH GL + 
Sbjct: 237 KMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSER 296

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G++      R   IKP+  HY CM++L+GR G L+E+   I   P  P  ++W++LL AC
Sbjct: 297 GWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTAC 356

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R ++N +L + A + L   +P     +++L NIY  AG L + + +   L+  GL+ +  
Sbjct: 357 RVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPV 416

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QET 573
            S IE     H F SGD  +P  +EIY  ++++ + + + G                +  
Sbjct: 417 CSWIEVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQEERV 476

Query: 574 SLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
            L H E+LA+AFGLIST     ++IV   RICGDCH  +K+ ++V  REIVIRD GRFH 
Sbjct: 477 RLYHSEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHH 536

Query: 634 FQGGQCSCRDYW 645
           F+ G CSC DYW
Sbjct: 537 FKHGHCSCEDYW 548



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 40/246 (16%)

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM-------------LN 304
           E D  +   ++  +VK     +ARRLFDEM ERNL+SW  +ISG+             LN
Sbjct: 7   EFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLN 66

Query: 305 QDAEFK----------YKSCASIGALYHGIWVHVYIKKNQISID---------------N 339
              EF            ++ A +  +  G  +H    K  I  D               +
Sbjct: 67  MWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGS 126

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           IE A  +F E+ EK    W ++IA YA+ G++++A+D++ EM ++G K D  TF  ++  
Sbjct: 127 IEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRI 186

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           C+    V+      +   R +     +     +VD   + G +E++ +    M    +V 
Sbjct: 187 CARLASVEHAKQAHAALIR-HGFGSDIVANTALVDFYSKWGRIEDARHVFDKMA-SKNVI 244

Query: 460 IWSSLL 465
            W++L+
Sbjct: 245 SWNALI 250


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 173/573 (30%), Positives = 295/573 (51%), Gaps = 62/573 (10%)

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           +WN  + N L++ Y                  +K  ++ EV +LF ++P  D IS+N +I
Sbjct: 273 VWNVFVGNALLDYY------------------SKHDQVDEVGKLFXEMPELDGISYNVVI 314

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           + Y   G ++E   L  K+        +    +L+S  T   +L MG+ +H         
Sbjct: 315 TSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGAN 374

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
               + N LVDMY KC    EAQK+     I     V WT ++S YV+  + +E   +F 
Sbjct: 375 FESRVENALVDMYAKCNGDKEAQKIFD--NIACKSTVPWTAMISAYVQKGKHEEGINVFS 432

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345
           +M    + +     + +L        ++CA++ ++  G  +H  + ++   + N+     
Sbjct: 433 DMRRTGVPADQATFASIL--------RACANLASISLGRQLHSLLIRSGF-MSNVYSGSA 483

Query: 346 L----------------FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
           L                F E+ E+N   W ++I+AYA  G+    ++ F +M ++G KPD
Sbjct: 484 LLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPD 543

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            V+F+++LSACSH G V+E     +  +++Y + PK +HY  MVD+L R G  +E+   +
Sbjct: 544 SVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLM 603

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA-HVLLANIYAKAGRL 508
           T MP  P   +WSS+L +CR H+N +LA+ A   L   + L D A ++ ++NIYA AG+ 
Sbjct: 604 TEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQW 663

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
           D++++++  +RD G++K   YS +E     H F++ D  +P  ++I   +N +   ++++
Sbjct: 664 DNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKK 723

Query: 569 GLQ----------------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G +                E+   H ER A+AF L++T + + I ++ NLR C DCH+ +
Sbjct: 724 GYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAI 783

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           KV SQ+  REI++RD+ RFH F+ G CSC DYW
Sbjct: 784 KVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 172/366 (46%), Gaps = 49/366 (13%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           QLF  + N+D +++N++++ Y++ G+  E + L  ++   G+ P + T  +L+SA   L 
Sbjct: 196 QLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLD 255

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D + G+ +H F+ ++    +  + N L+D Y K  ++ E  KL    E+ E+D + +  +
Sbjct: 256 DTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLF--XEMPELDGISYNVV 313

Query: 268 VSGYVKSNERDEARRLFDEM----VERNLISWTLMIS---GMLNQDAEFKYKSCA-SIGA 319
           ++ Y  + +  E+  LF ++     +R    +  ++S     LN     +    A ++GA
Sbjct: 314 ITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGA 373

Query: 320 LY----HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            +        V +Y K N       + A  +F  I+ K+   WT++I+AY   G  ++ I
Sbjct: 374 NFESRVENALVDMYAKCN-----GDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGI 428

Query: 376 DLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKP 424
           ++F +M  TG   DQ TF ++L AC+           H  L+  G+      S VY+   
Sbjct: 429 NVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGF-----MSNVYSGSA 483

Query: 425 KMQHY---GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            +  Y   GCM D +   G           MP    VS W++L+ A   + NV    ++F
Sbjct: 484 LLDTYAKCGCMTDAIKSFG----------EMPERNSVS-WNALISAYAQNGNVDGTLNSF 532

Query: 482 KHLTET 487
           + + ++
Sbjct: 533 QQMIQS 538



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 121/516 (23%), Positives = 206/516 (39%), Gaps = 103/516 (19%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGDLGYAQQIIRQGDEPEIKIWNSI 110
           S++    I +H++ T    +P      F+   F   GDL +A Q+  Q     +   N+I
Sbjct: 23  SLNSNHLIDAHIVKTGF--NPNTCRSNFQVNNFLERGDLVHAHQVFDQ-----MPAKNTI 75

Query: 111 IENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS 170
             N +I+G+                   K GKL +  +LFD +  R  +SW  +I  Y  
Sbjct: 76  SLNMMISGHL------------------KFGKLSKARELFDGMVERTAVSWTILIGGYLQ 117

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
               +E   L + M   G+ PD VT+V+L+S   +L    +   +H  + +   + +  +
Sbjct: 118 SNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMV 177

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
            N LVD Y K   +  A +L  ++ +++ D V + +L++GY      +EA  LF E    
Sbjct: 178 CNSLVDAYCKTHCLYLASQLF-KHMLNK-DTVTFNSLMTGYSNEGLNEEAIELFLE---- 231

Query: 291 NLISWTLMISGMLNQDAEFKYKSCASIG--ALYHGIWVHVYIKKN----QISIDNIELAY 344
                 L  SG+   D  F     A++G      G  VH ++ K      + + N  L Y
Sbjct: 232 ------LHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDY 285

Query: 345 -----------DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                       LF E+ E +   +  VI +YA  G  +++ DLF +++ T     Q  F
Sbjct: 286 YSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPF 345

Query: 394 IALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKPKM--------------QH 428
             LLS  +           H   +  G +F   +SRV N    M               +
Sbjct: 346 ATLLSIATSSLNLRMGRQIHCQAITVGANF---ESRVENALVDMYAKCNGDKEAQKIFDN 402

Query: 429 YGC--------MVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLA 477
             C        M+    + G  EE  N  + M    +P D + ++S+LRAC    ++ L 
Sbjct: 403 IACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLG 462

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
                 L  +          ++N+Y+ +  LD  ++
Sbjct: 463 RQLHSLLIRSG--------FMSNVYSGSALLDTYAK 490


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 179/553 (32%), Positives = 304/553 (54%), Gaps = 60/553 (10%)

Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMIS-------CYTSMGMYREGLGLLSKMGAEG 188
           + + C +  +  + FD++P  + +    M S        YT++ ++R     +   G+ G
Sbjct: 133 MYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFRS----MVASGSAG 188

Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG--KIGE 246
           V  DE   +  +SA  ++ D  +   +H  + +  +     + N ++D Y K G   +G 
Sbjct: 189 VV-DEAAALVALSASARVPDRGITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGA 247

Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
           A+KL   +++ + DVV W T+++ Y ++    EA  L+ +M         L++ G +  +
Sbjct: 248 ARKL---FDMMDRDVVSWNTMIALYAQNGLSTEALGLYSKM---------LIVGGDVRCN 295

Query: 307 A---EFKYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFS 348
           A        +CA  GA+  G  +H           VY+  + + +      +E+A+  F 
Sbjct: 296 AVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQ 355

Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
           +I  KN+  W+++IA Y M G+ Q+A+ +F +M ++G KP+ +TFI +L+ACSH GL+ E
Sbjct: 356 KIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSE 415

Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
           G  + +     + I+P ++HYGCMVDLLGRAG L+E+   I  M + PD ++W +LL AC
Sbjct: 416 GRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSAC 475

Query: 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528
           R ++NV+LA+   + L E D  N G +VLL+NIYA+AG   ++ R+R+ ++  G++K  G
Sbjct: 476 RIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPG 535

Query: 529 YSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QET 573
           YS +E  G  H F  GD  +P  +EIY  L ++   +   G                +E+
Sbjct: 536 YSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERES 595

Query: 574 SLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
            L+ H E+LAVAF L+++ + + I ++ NLR+C DCH+ +K+ +++  REI+IRD  RFH
Sbjct: 596 MLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFH 655

Query: 633 RFQGGQCSCRDYW 645
            F+ G CSC DYW
Sbjct: 656 HFKDGLCSCGDYW 668



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 22/247 (8%)

Query: 22  LGLVPKMRISRKFANVCPVSLDVIMVERS-CSSIDEFERIHSHLITTNLMRDPQISTQVF 80
           LGL  KM I         V+L  +++  +   +I   +RIH+ ++   L  +  + T V 
Sbjct: 279 LGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVV 338

Query: 81  EFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAI------------YL 128
           +     G +  A +  ++     I  W+++I    ++GY QE   +            Y+
Sbjct: 339 DMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYI 398

Query: 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNR-----DVISWNTMISCYTSMGMYREGLGLLSK 183
             +T     +  G L E    ++ +         V  +  M+      G   E  GL+ +
Sbjct: 399 TFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKE 458

Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
           M    V PD     +L+SA    +++E+ K     L E     SG  +  L ++Y + G 
Sbjct: 459 M---KVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYV-LLSNIYAEAGM 514

Query: 244 IGEAQKL 250
             E +++
Sbjct: 515 WKEVERM 521


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/487 (35%), Positives = 266/487 (54%), Gaps = 40/487 (8%)

Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
           PD  T   LI A  +L  L  G+ LH    ++       + N LV +Y  CG    A K+
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 173

Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
                +   ++V W ++++ +  +   +E   +F EM+  +       I  +L       
Sbjct: 174 FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLT------ 227

Query: 311 YKSCASIGALYHGIWVHVYIKK------NQISIDNIEL---------AYDLFSEIS-EKN 354
             +CA  GAL  G  VHVY++K      + +S   I+L         A  +F E+   + 
Sbjct: 228 --ACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRT 285

Query: 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS 414
           V  WTS+I   A  G  ++A++LF  ME     P ++T + +L ACSH GLVD+G+ +  
Sbjct: 286 VVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFD 345

Query: 415 KKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474
           +    Y I P+++H GCMVDLLGRAG +EE+ ++I +MP+ P+  +W +LL +C  H+ +
Sbjct: 346 RMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKL 405

Query: 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534
           +L + A++ L E DP + G +VLL+N+YA  G   D+  +R  +    ++K  G+SL+E 
Sbjct: 406 ELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVEL 465

Query: 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HR 578
              V++F  GD  +P SE+IY ML EI   L+++G                +ET+L  H 
Sbjct: 466 RNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHS 525

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           ERLA+AF L+ +     IRI+ NLR+CGDCH    + S+VY+REI++RD  RFH FQGG 
Sbjct: 526 ERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGA 585

Query: 639 CSCRDYW 645
           CSC+DYW
Sbjct: 586 CSCKDYW 592


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 176/530 (33%), Positives = 286/530 (53%), Gaps = 42/530 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
            LF+ +   D++ +N+M   Y+      E   L  ++  +G+ PD  T  SL+ A    +
Sbjct: 84  HLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAK 143

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
            LE G+ LH    +  +  +  +   L++MY +C  +  A+ +  R  I E  VV +  +
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDR--IVEPCVVCYNAM 201

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
           ++GY + N  +EA  LF EM  + L    + +  +L+        SCA +G+L  G W+H
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLS--------SCALLGSLDLGKWIH 253

Query: 328 VYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
            Y KK         N   ID      +++ A  +F ++  K+   W+++I AYA  G A+
Sbjct: 254 KYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAE 313

Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432
           K++ +F  M     +PD++TF+ LL+ACSH G V+EG  + S+    + I P ++HYG M
Sbjct: 314 KSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSM 373

Query: 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492
           VDLL RAG+LE++  FI  +PI P   +W  LL AC  H N+ LAE   + + E D  + 
Sbjct: 374 VDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHG 433

Query: 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552
           G +V+L+N+YA+  + + +  +R  ++D    K  G S IE    VH+F SGD     + 
Sbjct: 434 GDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATT 493

Query: 553 EIYLMLNEIEMTLQQQG-LQETSL----------------QHRERLAVAFGLISTSEKTT 595
           +++  L+E+   L+  G + +TS+                 H E+LA+ FGL++T   TT
Sbjct: 494 KLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTT 553

Query: 596 IRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           IR+V NLR+C DCH+  K+ S ++ R++V+RD  RFH F+ G+CSC D+W
Sbjct: 554 IRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 139/331 (41%), Gaps = 65/331 (19%)

Query: 45  IMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT---GDLGYAQQIIRQGDE 101
           I++   C+S+ E  +I ++ I +++  D     ++  F   +     + YA+ +     E
Sbjct: 33  ILLISKCNSLRELMQIQAYAIKSHI-EDVSFVAKLINFCTESPTESSMSYARHLFEAMSE 91

Query: 102 PEIKIWNSIIENQLINGYPQEVFAIYLYLV---------TRTVLLNKCGKLKE------- 145
           P+I I+NS+         P EVF++++ ++         T   LL  C   K        
Sbjct: 92  PDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQL 151

Query: 146 --------------VCQ-----------------LFDKLPNRDVISWNTMISCYTSMGMY 174
                         VC                  +FD++    V+ +N MI+ Y      
Sbjct: 152 HCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRP 211

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
            E L L  +M  + + P+E+T++S++S+   L  L++GK +H + ++ +      +   L
Sbjct: 212 NEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTAL 271

Query: 235 VDMYFKCGKIGEAQKLLG--RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
           +DM+ KCG + +A  +    RY+    D   W+ ++  Y    + +++  +F+ M   N+
Sbjct: 272 IDMFAKCGSLDDAVSIFEKMRYK----DTQAWSAMIVAYANHGKAEKSMLMFERMRSENV 327

Query: 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHG 323
               +   G+LN        +C+  G +  G
Sbjct: 328 QPDEITFLGLLN--------ACSHTGRVEEG 350



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%)

Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398
           ++  A  LF  +SE ++ ++ S+   Y+   +  +   LF+E+ E G  PD  TF +LL 
Sbjct: 78  SMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLK 137

Query: 399 ACSHGGLVDEG 409
           AC+    ++EG
Sbjct: 138 ACAVAKALEEG 148


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 186/577 (32%), Positives = 307/577 (53%), Gaps = 57/577 (9%)

Query: 111 IENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI-SCYT 169
           I  Q I  +     +++LY  +R + ++        C++F+++ N +   WNT+I +C  
Sbjct: 44  IHAQAIRNFSTHNSSLFLY--SRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACAR 101

Query: 170 SMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
           S+    + + +  +M  EG V PD+ T   L+ A   +  L  G+  H  + +  + +  
Sbjct: 102 SLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDV 161

Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
            + N L+ +Y  CG +  A K+  +  +  +  V W  ++  YV+S   + A +LF EM 
Sbjct: 162 YVGNSLIHLYASCGCLSMALKVFEKMPLRSL--VSWNVMIDAYVQSGLFENALKLFVEMQ 219

Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK------------NQIS 336
                  +    G   Q       +CA IGAL  G+W H Y+ +            N   
Sbjct: 220 N------SFEPDGYTMQSI---VSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSL 270

Query: 337 ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF---LEMEETGTK 387
           +D      ++ +A  +F  + + ++  W S+I A AM G  Q A+  F   +EME+    
Sbjct: 271 VDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKF--L 328

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           P+ VTF+ +LSAC+HGG+V +G  +       Y I+P+++HYGC+VDLL R+G ++E+  
Sbjct: 329 PNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEALE 388

Query: 448 FITSMPIPPDVSIWSSLLRAC-RCHQNVKLAEH-AFKHLTETDPLNDGAHVLLANIYAKA 505
            + +M I PD  IW SLL AC + +  V+L+E  AFK L     ++ G +V+L+ +YA A
Sbjct: 389 LVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQSEKTISSGVYVMLSRVYASA 448

Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
            + +D+  IR  + DMG+ K+ G S IE  G  H+F +GD  +P  +EIY +++ IE  L
Sbjct: 449 RQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEIYGVIDLIEEKL 508

Query: 566 QQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDC 608
           +++G                +++ SL+ H ERLA+AFGL++    T +RI  NLR+C DC
Sbjct: 509 ERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTPVRIFKNLRVCNDC 568

Query: 609 HSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           H   K+ S+++N EI++RD  RFH F+ G CSC D+W
Sbjct: 569 HQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 183/558 (32%), Positives = 294/558 (52%), Gaps = 50/558 (8%)

Query: 128 LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG-----MYREGLG 179
           L +V  T LL+   K G L +  QLF   PN++V+ +N MI+ +            E L 
Sbjct: 246 LDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALK 305

Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
           L S+M  +G+ P + T  S+I     +   E GK +H  + +  ++    + + L+++Y 
Sbjct: 306 LFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYS 365

Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
             G   +  K        ++D+V WTT+++GY ++ + + A  LF E++         +I
Sbjct: 366 LLGSTEDQLKCFN--STPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFII 423

Query: 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVY-----------IKKNQISI----DNIELAY 344
           + ML+        +CA + A   G  VH Y           ++ +QIS+     N++ A 
Sbjct: 424 TTMLS--------ACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAK 475

Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
             F EI   +V  W+ +I + A  GHA+ AI+LF  M+  G  P+Q+TF+ +L+ACSHGG
Sbjct: 476 ITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGG 535

Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
           LV+EG  +     + Y++K  ++H  C+VDLL RAG L ++ NFI +        +W +L
Sbjct: 536 LVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTL 595

Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
           L  CR ++++   +H  + L E DP    ++VLL NIY  AG     ++IR  ++D G++
Sbjct: 596 LSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIR 655

Query: 525 KQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ-------- 576
           K+ G S IE G  VH F  GDI +P S+ IY  L  +    ++ G  +  +Q        
Sbjct: 656 KEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLEKKRKIGYIDQKIQNVTISTKE 715

Query: 577 ---------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRD 627
                    H E+LAV+FG++S      ++++ NLR+C DCH+ MK+ S V  REI++RD
Sbjct: 716 VKGTLGVNHHSEKLAVSFGIVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEKREIILRD 775

Query: 628 NGRFHRFQGGQCSCRDYW 645
           + RFH F+ G CSC DYW
Sbjct: 776 SLRFHHFKEGSCSCNDYW 793



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 153/348 (43%), Gaps = 30/348 (8%)

Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
           +K G++    +LFD++  R VIS+N +IS Y  MG Y + +GL S+     +  D+ +  
Sbjct: 55  SKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYA 114

Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
            ++SA  +++D  +GK +H       +     L N L+DMY KC +I  A+ L      D
Sbjct: 115 GVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESS--D 172

Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
           E+D V W +L++GY +    +E  +L  +M    L      +   L +       +  S 
Sbjct: 173 ELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSAL-KSCYLNLNNMVSY 231

Query: 318 GALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVI 362
           G   HG     Y  K  + +D +                 A  LF     +NV ++ ++I
Sbjct: 232 GKTLHG-----YTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMI 286

Query: 363 AAYAMAGH-----AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
           A +          A +A+ LF +M+  G KP   TF +++  C+H    + G    +   
Sbjct: 287 AGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHIC 346

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
           + +NI+        +++L    G  E+      S P   D+  W++++
Sbjct: 347 K-HNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTP-KLDIVSWTTMI 392



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 15/219 (6%)

Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
           D V    L+   +K      GK  H  + ++       LLN  +++Y K G++G AQKL 
Sbjct: 8   DSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLF 67

Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
            R  + E  V+ +  L+SGY       +A  LF E     L       +G+L+   + K 
Sbjct: 68  DR--MSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKD 125

Query: 312 KSCASIGALYHGIWV------HVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSV 361
               ++G + HG+ +       V++    I +    + I+ A  LF    E +   W S+
Sbjct: 126 ---FALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSL 182

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
           I  YA  G  ++ + L ++M  TG + +  T  + L +C
Sbjct: 183 ITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSC 221


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/524 (33%), Positives = 279/524 (53%), Gaps = 42/524 (8%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
           +  RD+ SW ++I+ Y    M  E LGLL  M      P+  T  SL+ A        +G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYV 272
           + +H    +        + + L+DMY +CG++  A  +    +++  + V W  L++G+ 
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFD--QLESKNGVSWNALIAGFA 118

Query: 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK 332
           +  + +    +F EM +RN    T      +       + + A IGAL  G WVH ++ K
Sbjct: 119 RKGDGETTLLMFAEM-QRNGFEATHFTYSSV-------FSAIAGIGALEQGKWVHAHMIK 170

Query: 333 N----QISIDNIEL-----------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
           +       + N  L           A  +F  + +K++  W S++ A+A  G  ++A+  
Sbjct: 171 SGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTH 230

Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
           F EM + G   +Q+TF+++L+ACSHGGLV EG  +     + +N++P++ HY  +VDLLG
Sbjct: 231 FEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM-KEHNLEPEIDHYVTVVDLLG 289

Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
           RAG L ++  FI  MP+ P  ++W +LL +CR H+N K+ + A  H+ E DP + G  VL
Sbjct: 290 RAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVL 349

Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
           L NIYA  G+ D  +R+R  ++  G+KK+   S +E    VH F + D  +P SEEIY  
Sbjct: 350 LYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKK 409

Query: 558 LNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNN 601
             EI + +++ G                ++  LQ H E++A+AF LI+     TIRI+ N
Sbjct: 410 WEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKN 469

Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           +RICGDCHS  +  S+V+ REIV+RD  RFH F  G CSC DYW
Sbjct: 470 IRICGDCHSAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 130 LVTRTVL--LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
            V  T+L    K G + +  ++FD +  +D+++WN+M++ +   G+ RE +    +M   
Sbjct: 178 FVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKC 237

Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
           GV  +++T +S+++A +    ++ GK     ++E  ++        +VD+  + G + +A
Sbjct: 238 GVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDA 297


>gi|326524233|dbj|BAK00500.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 688

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 197/623 (31%), Positives = 304/623 (48%), Gaps = 72/623 (11%)

Query: 39  PVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
           P +  +  V R CS + + E   RIH  L+   +  D  +   V +    +GD    ++ 
Sbjct: 117 PNAFVLAAVLRCCSGLGDVESGKRIHGWLLRNGVHLDRVLCNAVLDMYAKSGDYELTKRA 176

Query: 96  IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
            R   E +   WN +I   L                       + G +    QLFD+ P 
Sbjct: 177 FRAMVEVDAVSWNIVISACL-----------------------QSGDILGSTQLFDESPV 213

Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
           RD  SWNT+IS     G   + L  L  M   GV  +  T  + ++    L  L++G+ L
Sbjct: 214 RDTSSWNTIISGLMRNGCAAKALDRLYHMARAGVEFNHYTYSTALALAGMLSMLDLGRQL 273

Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL-WTTLVSGYVKS 274
           H  +  S ++    + + L+DMY KC  I  A  +  R+     D+   W+T+++GYV++
Sbjct: 274 HGRVLTSALEADAFVRSSLMDMYCKCSSIKTAVLVFERWSHLTGDMKFAWSTMIAGYVQN 333

Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ 334
              +EA   F  M+   + +    ++  +         +CA+ G +  G           
Sbjct: 334 GREEEAFEFFRLMLCEGVAADQFTLTSAV--------AACANAGMVEQG----------- 374

Query: 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
                      +F     KNV LWTS++ +YA  G  + AI LF  M     KP++VT +
Sbjct: 375 ----------RMFDIAPTKNVALWTSMLCSYASHGKGRMAIKLFNRMTAEKIKPNEVTLV 424

Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
            +LSACSHG LV EG  F       Y I P ++HY CMVDL GRAG L+++  FI    I
Sbjct: 425 GVLSACSHGRLVSEGEHFFKLMQEEYGIVPSIEHYNCMVDLYGRAGLLDKANIFINENKI 484

Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
             +  +W +LL ACR H++++ A+ A + L + +  + G++V+L+N+YA   +  D S++
Sbjct: 485 KHESIVWKTLLSACRVHKDMEHAKLASESLIQLEQCDAGSYVMLSNMYATHSKWRDTSKL 544

Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---- 570
           R  + + G++KQ G S I     VH F +GD  +P S EIY  L ++   L++ G     
Sbjct: 545 RSLMLERGVRKQPGRSWIHLKNTVHTFVAGDAAHPRSSEIYTYLEKLMERLKELGYTSRI 604

Query: 571 -----------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
                      +ET+L+ H E+LA+AFG+IST   T +RI  NLRIC DCH  +K  S+ 
Sbjct: 605 DLVAHDVEEEQRETALKFHSEKLAMAFGIISTPSGTPLRIFKNLRICVDCHEAIKYVSRA 664

Query: 619 YNREIVIRDNGRFHRFQGGQCSC 641
            +REIV+RD  RFH F+  +CSC
Sbjct: 665 TDREIVVRDLYRFHHFKDAKCSC 687



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 181/410 (44%), Gaps = 59/410 (14%)

Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLR 207
           L D+ P R   +W  +I+     G + +G+G  ++M AEG  +P+   + +++   + L 
Sbjct: 74  LLDETPKRSAAAWTAVIAGCARAGRHADGMGAFAEMLAEGGAAPNAFVLAAVLRCCSGLG 133

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D+E GK +H +L  + + +   L N ++DMY K G   E  K   R  + EVD V W  +
Sbjct: 134 DVESGKRIHGWLLRNGVHLDRVLCNAVLDMYAKSGDY-ELTKRAFRAMV-EVDAVSWNIV 191

Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA----------------EFKY 311
           +S  ++S +   + +LFDE   R+  SW  +ISG++                    EF +
Sbjct: 192 ISACLQSGDILGSTQLFDESPVRDTSSWNTIISGLMRNGCAAKALDRLYHMARAGVEFNH 251

Query: 312 KSCAS------------IGALYHG------IWVHVYIKKNQI-------SIDNIELAYDL 346
            + ++            +G   HG      +    +++ + +       SI    L ++ 
Sbjct: 252 YTYSTALALAGMLSMLDLGRQLHGRVLTSALEADAFVRSSLMDMYCKCSSIKTAVLVFER 311

Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
           +S ++    + W+++IA Y   G  ++A + F  M   G   DQ T  + ++AC++ G+V
Sbjct: 312 WSHLTGDMKFAWSTMIAGYVQNGREEEAFEFFRLMLCEGVAADQFTLTSAVAACANAGMV 371

Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA-----NFITSMPIPPDVSIW 461
           ++G        R+++I P          L   A H +        N +T+  I P+    
Sbjct: 372 EQG--------RMFDIAPTKNVALWTSMLCSYASHGKGRMAIKLFNRMTAEKIKPNEVTL 423

Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA--HVLLANIYAKAGRLD 509
             +L AC   + V   EH FK + E   +      +  + ++Y +AG LD
Sbjct: 424 VGVLSACSHGRLVSEGEHFFKLMQEEYGIVPSIEHYNCMVDLYGRAGLLD 473


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 184/538 (34%), Positives = 284/538 (52%), Gaps = 30/538 (5%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
           T  L K G +   C +F ++       +NTMI    +     E L L   M   GV PD+
Sbjct: 39  TCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGVEPDK 98

Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
            T   ++ A + L  ++ G  +H  + +  ++    + N L++MY KCG+I  A  +   
Sbjct: 99  FTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNG 158

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313
             +DE  V  W+ ++  +      +E   L  +M         +  S ++N  +   +  
Sbjct: 159 --MDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRCR--VEESTLVNVLSACTHLG 214

Query: 314 CASIGALYHGIWV------HVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIA 363
              +G   HGI +      +V +K + I +      +E    +F  +SEKN Y +T +I+
Sbjct: 215 SPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMIS 274

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
             A+ G  ++A+ +F EM E G  PD V ++ + SACSH GLV+EG          + I+
Sbjct: 275 GLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIE 334

Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
           P +QHYGCMVDLLGR G L+E+   I SM I P+  IW SLL AC+ H N+++ + A ++
Sbjct: 335 PTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAEN 394

Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
           L   +  N G +++LAN+YAKA + DD+++IR KL +  L +  G+SLIE    V+KF S
Sbjct: 395 LFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEAKRKVYKFVS 454

Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGL 587
            D   P    IY M++++E  L+ +G    + Q                H ++LA+AFGL
Sbjct: 455 QDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEEKKERLKFHSQKLAIAFGL 514

Query: 588 ISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           I TSE + +RI  NLR+C DCH++ K  S +Y REI +RD  RFH F+ G CSC+DYW
Sbjct: 515 IHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRLRFHHFKNGSCSCKDYW 572



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 168/397 (42%), Gaps = 78/397 (19%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQGDEPEIKIWNSII 111
           ++EF+++H+H++   +  D    + +      T  G + YA  I  Q DEP    +N++I
Sbjct: 11  MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMI 70

Query: 112 ENQLINGYPQEVFAIYLYLVTRTV------------------------------------ 135
              + +   +E   +Y+ ++ R V                                    
Sbjct: 71  RGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130

Query: 136 --------LLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
                   L+N   KCG++K  C +F+ +  + V SW+ +I  +  + M+ E L LL KM
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKM 190

Query: 185 GAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
            +EG    +E T+V+++SA T L   ++GK +H  L  +  +++  +   L+DMY K G 
Sbjct: 191 SSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGC 250

Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
           + +  ++     + E +   +T ++SG        EA ++F EM+E  L    ++  G+ 
Sbjct: 251 LEKGLRVFKN--MSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGV- 307

Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA 363
                  + +C+  G +  G+      K  Q            F    E  V  +  ++ 
Sbjct: 308 -------FSACSHAGLVEEGLQC---FKSMQ------------FEHKIEPTVQHYGCMVD 345

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
                G  ++A +L   M     KP+ V + +LLSAC
Sbjct: 346 LLGRFGMLKEAYELIKSM---SIKPNDVIWRSLLSAC 379


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/573 (30%), Positives = 295/573 (51%), Gaps = 62/573 (10%)

Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
           +WN  + N L++ Y                  +K  ++ EV +LF ++P  D IS+N +I
Sbjct: 273 VWNVFVGNALLDYY------------------SKHDQVDEVGKLFYEMPELDGISYNVVI 314

Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
           + Y   G ++E   L  K+        +    +L+S  T   +L MG+ +H         
Sbjct: 315 TSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGAN 374

Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
               + N LVDMY KC    EAQK+     I     V WT ++S YV+  + +E   +F 
Sbjct: 375 FESRVENALVDMYAKCNGDKEAQKIFD--NIACKSTVPWTAMISAYVQKGKHEEGINVFS 432

Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345
           +M    + +     + +L        ++CA++ ++  G  +H  + ++   + N+     
Sbjct: 433 DMRRTGVPADQATFASIL--------RACANLASISLGRQLHSLLIRSGF-MSNVYSGSA 483

Query: 346 L----------------FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
           L                F E+ E+N   W ++I+AYA  G+    ++ F +M ++G KPD
Sbjct: 484 LLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPD 543

Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
            V+F+++LSACSH G V+E     +  +++Y + PK +HY  MVD+L R G  +E+   +
Sbjct: 544 SVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLM 603

Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA-HVLLANIYAKAGRL 508
           T MP  P   +WSS+L +CR H+N +LA+ A   L   + L D A ++ ++NIYA AG+ 
Sbjct: 604 TEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQW 663

Query: 509 DDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568
           D++++++  +RD G++K   YS +E     H F++ D  +P  ++I   +N +   ++++
Sbjct: 664 DNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKK 723

Query: 569 GLQ----------------ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFM 612
           G +                E+   H ER A+AF L++T + + I ++ NLR C DCH+ +
Sbjct: 724 GYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAI 783

Query: 613 KVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
           KV SQ+  REI++RD+ RFH F+ G CSC DYW
Sbjct: 784 KVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 173/366 (47%), Gaps = 49/366 (13%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           QLF  + N+D +++N++++ Y++ G+  E + L  ++   G+ P + T  +L+SA   L 
Sbjct: 196 QLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLD 255

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
           D + G+ +H F+ ++    +  + N L+D Y K  ++ E  KL   YE+ E+D + +  +
Sbjct: 256 DTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLF--YEMPELDGISYNVV 313

Query: 268 VSGYVKSNERDEARRLFDEM----VERNLISWTLMIS---GMLNQDAEFKYKSCA-SIGA 319
           ++ Y  + +  E+  LF ++     +R    +  ++S     LN     +    A ++GA
Sbjct: 314 ITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGA 373

Query: 320 LY----HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
            +        V +Y K N       + A  +F  I+ K+   WT++I+AY   G  ++ I
Sbjct: 374 NFESRVENALVDMYAKCN-----GDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGI 428

Query: 376 DLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKP 424
           ++F +M  TG   DQ TF ++L AC+           H  L+  G+      S VY+   
Sbjct: 429 NVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGF-----MSNVYSGSA 483

Query: 425 KMQHY---GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
            +  Y   GCM D +   G           MP    VS W++L+ A   + NV    ++F
Sbjct: 484 LLDTYAKCGCMTDAIKSFG----------EMPERNSVS-WNALISAYAQNGNVDGTLNSF 532

Query: 482 KHLTET 487
           + + ++
Sbjct: 533 QQMIQS 538



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 121/516 (23%), Positives = 206/516 (39%), Gaps = 103/516 (19%)

Query: 53  SIDEFERIHSHLITTNLMRDPQISTQVFEFLVF--TGDLGYAQQIIRQGDEPEIKIWNSI 110
           S++    I +H++ T    +P      F+   F   GDL +A Q+  Q     +   N+I
Sbjct: 23  SLNSNHLIDAHIVKTGF--NPNTCRSNFQVNNFLERGDLVHAHQVFDQ-----MPAKNTI 75

Query: 111 IENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS 170
             N +I+G+                   K GKL +  +LFD +  R  +SW  +I  Y  
Sbjct: 76  SLNMMISGHL------------------KFGKLSKARELFDGMVERTAVSWTILIGGYLQ 117

Query: 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL 230
               +E   L + M   G+ PD VT+V+L+S   +L    +   +H  + +   + +  +
Sbjct: 118 SNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMV 177

Query: 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER 290
            N LVD Y K   +  A +L  ++ +++ D V + +L++GY      +EA  LF E    
Sbjct: 178 CNSLVDAYCKTHCLYLASQLF-KHMLNK-DTVTFNSLMTGYSNEGLNEEAIELFLE---- 231

Query: 291 NLISWTLMISGMLNQDAEFKYKSCASIG--ALYHGIWVHVYIKKN----QISIDNIELAY 344
                 L  SG+   D  F     A++G      G  VH ++ K      + + N  L Y
Sbjct: 232 ------LHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDY 285

Query: 345 -----------DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
                       LF E+ E +   +  VI +YA  G  +++ DLF +++ T     Q  F
Sbjct: 286 YSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPF 345

Query: 394 IALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKPKM--------------QH 428
             LLS  +           H   +  G +F   +SRV N    M               +
Sbjct: 346 ATLLSIATSSLNLRMGRQIHCQAITVGANF---ESRVENALVDMYAKCNGDKEAQKIFDN 402

Query: 429 YGC--------MVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLA 477
             C        M+    + G  EE  N  + M    +P D + ++S+LRAC    ++ L 
Sbjct: 403 IACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLG 462

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
                 L  +          ++N+Y+ +  LD  ++
Sbjct: 463 RQLHSLLIRSG--------FMSNVYSGSALLDTYAK 490


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/544 (32%), Positives = 285/544 (52%), Gaps = 62/544 (11%)

Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEM 211
           +P+RD I+W ++++      +  + L + S +G+   + PD+    +L+ A   L  ++ 
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 60

Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
           G+ +H     S       + + LVDMY KCG +  A+ +     +   + + WT +VSGY
Sbjct: 61  GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVK--NTISWTAMVSGY 118

Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS------------------ 313
            KS  ++EA  LF  +  +NL SWT +ISG +      +  S                  
Sbjct: 119 AKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVL 178

Query: 314 ------CASIGALYHGIWVH------VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSV 361
                 CA++ A   G  VH      +Y K       ++  A D+FS +  ++V  WTS+
Sbjct: 179 SSIVGACANLAASIAGRQVHGNALIDMYAK-----CSDVIAAKDIFSRMRHRDVVSWTSL 233

Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
           I   A  G A+KA+ L+ +M   G KP++VTF+ L+ ACSH G V++G +     ++ Y 
Sbjct: 234 IVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYG 293

Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC----RCHQNVKLA 477
           I+P +QHY C++DLLGR+G L+E+ N I +MP PPD   W++LL AC    R    +++A
Sbjct: 294 IRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIA 353

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
           +H        DP     ++LL+NIYA A     +S  R KL +M ++K  G+S +E    
Sbjct: 354 DHLVSSFKLKDP---STYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKE 410

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEI--EMTLQQQGLQETS---------------LQHRER 580
              F +G+  +P  E+I+ +L ++  EM ++   + +TS                 H ER
Sbjct: 411 TEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSER 470

Query: 581 LAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCS 640
            AVA+GL+     T IRIV NLR+CGDCH  +K  S++  REI++RD  R+H F+GG+CS
Sbjct: 471 SAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCS 530

Query: 641 CRDY 644
           C D+
Sbjct: 531 CNDF 534



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 4/152 (2%)

Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
           KC  +     +F ++ +RDV+SW ++I      G   + L L   M + GV P+EVT V 
Sbjct: 208 KCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVG 267

Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
           LI A + +  +E G+ L   + +    I  SL +Y  L+D+  + G + EA+ L+     
Sbjct: 268 LIYACSHVGFVEKGRELFQSMTKD-YGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPF 326

Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
              D   W  L+S   +        R+ D +V
Sbjct: 327 PP-DEPTWAALLSACKRQGRGQMGIRIADHLV 357


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 272/502 (54%), Gaps = 41/502 (8%)

Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
           ++ L L S +   G   D++T+ +   A   L  L+ GK +H    ++       + + +
Sbjct: 12  KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 71

Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
           +DMY KCG +  A  +     I   D V WT+++SG V +   D+A R++  M +  ++ 
Sbjct: 72  LDMYIKCGDMVNAGIVFNY--ISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMP 129

Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------N 339
                + ++      K  SC  + AL  G  +H  + K     D               N
Sbjct: 130 DEYTFATLI------KASSC--VTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 181

Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399
           IE AY LF +++ +N+ LW +++   A  G+A++A++LF  M+  G +PD+V+FI +LSA
Sbjct: 182 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 241

Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
           CSH GL  E Y++L      Y I+P+++HY C+VD LGRAG ++E+   I +MP     S
Sbjct: 242 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 301

Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
           I  +LL ACR   +V+  +     L   +P +  A+VLL+NIYA A R DD++  R  ++
Sbjct: 302 INRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMK 361

Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------- 570
              +KK  G+S I+    +H F   D  +P ++ IY  + E+  T+++ G          
Sbjct: 362 RKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLL 421

Query: 571 ------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
                 +E SL  H E+LA+A+GLIST   TTIR++ NLR+CGDCH+ +K  S+V+ REI
Sbjct: 422 DVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREI 481

Query: 624 VIRDNGRFHRFQGGQCSCRDYW 645
           V+RD  RFH F+ G CSC DYW
Sbjct: 482 VLRDANRFHHFRDGVCSCGDYW 503



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 48/246 (19%)

Query: 54  IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113
           +D+ ++IH+H I      D  +++ + +  +  GD+  A  +      P+   W S+I  
Sbjct: 46  LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISG 105

Query: 114 QLINGYPQEVFAIYLYLVTRTVLLN----------------------------------- 138
            + NG   +   IY  +    V+ +                                   
Sbjct: 106 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 165

Query: 139 ------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
                       KCG +++  +LF K+  R++  WN M+      G   E + L   M +
Sbjct: 166 PFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS 225

Query: 187 EGVSPDEVTMVSLISARTKLR-DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
            G+ PD V+ + ++SA +      E  + LH    +  ++      + LVD   + G + 
Sbjct: 226 HGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQ 285

Query: 246 EAQKLL 251
           EA K++
Sbjct: 286 EADKVI 291



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 48/214 (22%)

Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
            Y +    +KA++LF  + ++G K DQ+T      AC    L+D+G     K+   + IK
Sbjct: 4   GYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQG-----KQIHAHAIK 58

Query: 424 P----KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA-- 477
                 +     ++D+  + G +  +      +  P DV+ W+S++  C  + N   A  
Sbjct: 59  AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA-WTSMISGCVDNGNEDQALR 117

Query: 478 -------------EHAFKHLTETD----PLNDG----AHVL-------------LANIYA 503
                        E+ F  L +       L  G    A+V+             L ++YA
Sbjct: 118 IYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYA 177

Query: 504 KAGRLDDMSRI--RMKLRDMGLKKQLGYSLIEQG 535
           K G ++D  R+  +M +R++ L   +   L + G
Sbjct: 178 KCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHG 211


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 191/547 (34%), Positives = 288/547 (52%), Gaps = 54/547 (9%)

Query: 141 GKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLG---LLSKMGAEGVSPDEV 194
           G L E  ++F ++     RD +SWN MI    + G +REGL    L  +M   G+  D  
Sbjct: 188 GFLNEARRVFREMGEGGGRDEVSWNAMI---VACGQHREGLEAVELFREMVRRGLKVDMF 244

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC-GKIGEAQKLLGR 253
           TM S+++A T ++DL  G   H  + +S    +  + + L+D+Y KC G + E +K+   
Sbjct: 245 TMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVF-- 302

Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDE-ARRLFDEMVERNL----ISWTLMISGMLNQDAE 308
            EI   D+VLW T++SG+ +  +  E     F EM          S+  + S   N    
Sbjct: 303 EEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNL--- 359

Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------IELAYDLFSEISEKNVYL 357
               S  S+G   H + +   I  N++S++N           +  A  +F  + E N+  
Sbjct: 360 ----SSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVS 415

Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417
             S+IA YA  G   +++ LF  M +    P+ +TFIA+LSAC H G V+EG  + +   
Sbjct: 416 LNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMK 475

Query: 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477
             + I+P+ +HY CM+DLLGRAG L+E+   I +MP  P    W++LL ACR H NV+LA
Sbjct: 476 ERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELA 535

Query: 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537
             A     + +P N   +V+L+N+YA A R ++ + ++  +R+ G+KK+ G S IE    
Sbjct: 536 VKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKK 595

Query: 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-------------------QETSLQHR 578
           VH F + D  +P  +EI++ + EI   ++Q G                    +   L H 
Sbjct: 596 VHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHS 655

Query: 579 ERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQ 638
           E+LAVAFGLIST E   I +V NLRICGDCH+ +K+ S +  REI +RD  RFH F+ G 
Sbjct: 656 EKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGH 715

Query: 639 CSCRDYW 645
           CSC DYW
Sbjct: 716 CSCGDYW 722



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 143/322 (44%), Gaps = 24/322 (7%)

Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
           Q+FD++P  D++S+NT+I+ Y   G  R  L L +++       D  T+  +I A     
Sbjct: 96  QVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGD-- 153

Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY-EIDEVDVVLWTT 266
           D+ + + LH F+         S+ N ++  Y + G + EA+++     E    D V W  
Sbjct: 154 DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNA 213

Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
           ++    +  E  EA  LF EMV R L      ++ +L     F        G  +HG+ +
Sbjct: 214 MIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTA---FTCVKDLVGGMQFHGMMI 270

Query: 327 HVYIKKN-QISIDNIEL----------AYDLFSEISEKNVYLWTSVIAAYAMAGH-AQKA 374
                 N  +    I+L             +F EI+  ++ LW ++I+ ++     ++  
Sbjct: 271 KSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDG 330

Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSH--GGLVDEGYDFLSKKSRV-YNIKPKMQHYGC 431
           I  F EM+  G  PD  +F+ + SACS+     V +    L+ KS + YN   ++     
Sbjct: 331 IWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYN---RVSVNNA 387

Query: 432 MVDLLGRAGHLEESANFITSMP 453
           +V +  + G++ ++     +MP
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMP 409



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 114/261 (43%), Gaps = 28/261 (10%)

Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
           T  +L+ A    RDL  GK LH    +S +  S  L N+   +Y KCG +  AQ      
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD-------- 306
           +    +V  + TL++ Y K +    AR++FDE+ + +++S+  +I+   ++         
Sbjct: 71  QYP--NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRL 128

Query: 307 -AEFKYKSCASIGALYHGIWVHVYIKKN---QISIDNIELAYDLFSEISEKNVYLWTSVI 362
            AE +       G    G+ +          Q+    +   YD ++ ++        +V+
Sbjct: 129 FAEVRELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVN-------NAVL 181

Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR---- 418
           A Y+  G   +A  +F EM E G + D+V++ A++ AC       E  +   +  R    
Sbjct: 182 ACYSRKGFLNEARRVFREMGEGGGR-DEVSWNAMIVACGQHREGLEAVELFREMVRRGLK 240

Query: 419 --VYNIKPKMQHYGCMVDLLG 437
             ++ +   +  + C+ DL+G
Sbjct: 241 VDMFTMASVLTAFTCVKDLVG 261



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
             + +KCG + +  ++FD +P  +++S N+MI+ Y   G+  E L L   M  + ++P+ 
Sbjct: 389 VAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNT 448

Query: 194 VTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
           +T ++++SA      +E G K  ++  E   ++      + ++D+  + GK+ EA++++ 
Sbjct: 449 ITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIE 508

Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
               +    + W TL+    K    + A +  +E ++
Sbjct: 509 TMPFNP-GSIEWATLLGACRKHGNVELAVKAANEFLQ 544


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 197/634 (31%), Positives = 320/634 (50%), Gaps = 67/634 (10%)

Query: 65  ITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIW----------NSIIENQ 114
           IT N       + ++ + L   G+L  A +++     P    +          NS+++ Q
Sbjct: 31  ITLNPTASTADNNKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQ 90

Query: 115 LI------NGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISC 167
            +      NG+ Q+ F     L T+ + + +    +    ++FDK  NR +  +N +   
Sbjct: 91  RVHRHLLENGFDQDPF-----LATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRA 145

Query: 168 YTSMGMYREGLGLLSKMGAEGVSPDEVT----MVSLISARTKLRDLEMGKNLHLFLEEST 223
            +  G   E L +  +M + G+  D  T    + + +++   +  L  G+ +H  +    
Sbjct: 146 LSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHG 205

Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
                 ++  LVDMY K G +  A  +  +  +   +VV W+ +++ Y K+ +  EA  L
Sbjct: 206 YDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVK--NVVSWSAMIACYAKNGKAFEALEL 263

Query: 284 FDEMV--ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI---- 337
           F E++   ++L   ++    M++        +    G L HG      ++K   SI    
Sbjct: 264 FRELMLETQDLCPNSVT---MVSVLQACAALAALEQGRLIHG----YILRKGLDSILPVI 316

Query: 338 ----------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
                       +EL   +F ++ +++V  W S+I++Y + G  +KAI +F EM   G +
Sbjct: 317 SALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVE 376

Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
           P  ++F+++L ACSH GLVDEG    +     + I P ++HY CMVDLLGRA  LEE+A 
Sbjct: 377 PSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAK 436

Query: 448 FITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507
            I +M I P   +W SLL +CR H NV+LAE A   L + +P N G +VLLA+IYA+AG 
Sbjct: 437 IIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGM 496

Query: 508 LDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567
            D + R++  L   GL+K  G S IE    ++ F S D  NP  E+++ +L ++ M L++
Sbjct: 497 WDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKE 556

Query: 568 QGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSF 611
           +G                 +   L H E+LAVAFGLI++S+   IRI  +LR+C DCHSF
Sbjct: 557 EGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSF 616

Query: 612 MKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
            K  S+  N+EI++RD  RFH F+ G CSC DYW
Sbjct: 617 TKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,744,421,503
Number of Sequences: 23463169
Number of extensions: 396206779
Number of successful extensions: 1078660
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8303
Number of HSP's successfully gapped in prelim test: 2957
Number of HSP's that attempted gapping in prelim test: 915439
Number of HSP's gapped (non-prelim): 54690
length of query: 645
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 496
effective length of database: 8,863,183,186
effective search space: 4396138860256
effective search space used: 4396138860256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)