BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048812
(645 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/713 (34%), Positives = 387/713 (54%), Gaps = 113/713 (15%)
Query: 41 SLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQ 98
S + ++ER C S+ + ++ H H+I T DP ++++F + L YA+++ +
Sbjct: 31 SRHISLIER-CVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDE 89
Query: 99 GDEPEIKIWNSIIENQLINGYPQEVFAI--YLYLVTRT-VLLNK---------------- 139
+P WN++I + P V +I +L +V+ + NK
Sbjct: 90 IPKPNSFAWNTLI--RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 140 -------------------------------CGKLKEVCQLFDKLPNRDVISWNTMISCY 168
CG L C++F + +DV+SWN+MI+ +
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207
Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
G + L L KM +E V VTMV ++SA K+R+LE G+ + ++EE+ + ++
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNL 267
Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
+L N ++DMY KCG I +A++L E E D V WTT++ GY S + + AR + + M
Sbjct: 268 TLANAMLDMYTKCGSIEDAKRLFDAME--EKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 289 ERNLISWTLMISGM-----------------------LNQDAEFK-YKSCASIGALYHGI 324
++++++W +IS LNQ +CA +GAL G
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 325 WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
W+H YIKK+ I ++ ++E + ++F+ + +++V++W+++I AM G
Sbjct: 386 WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445
Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
+A+D+F +M+E KP+ VTF + ACSH GLVDE + Y I P+ +HY
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505
Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
C+VD+LGR+G+LE++ FI +MPIPP S+W +LL AC+ H N+ LAE A L E +P
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565
Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
NDGAHVLL+NIYAK G+ +++S +R +R GLKK+ G S IE G +H+F SGD +P
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625
Query: 550 HSEEIYLMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSE 592
SE++Y L+E+ L+ G ++E SL H E+LA+ +GLIST
Sbjct: 626 MSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 685
Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
IR++ NLR+CGDCHS K+ SQ+Y+REI++RD RFH F+ GQCSC D+W
Sbjct: 686 PKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/643 (35%), Positives = 347/643 (53%), Gaps = 69/643 (10%)
Query: 39 PVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
P S V +SC+ + E ++IH H++ D + T + V G L A ++
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191
Query: 96 IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
+ ++ + ++I+ GY ++ +LFD++P
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGY-----------------------IENAQKLFDEIPV 228
Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
+DV+SWN MIS Y G Y+E L L M V PDE TMV+++SA + +E+G+ +
Sbjct: 229 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV 288
Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
HL++++ + ++N L+D+Y KCG++ A L R + DV+ W TL+ GY N
Sbjct: 289 HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER--LPYKDVISWNTLIGGYTHMN 346
Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
EA LF EM+ + + +L +CA +GA+ G W+HVYI K
Sbjct: 347 LYKEALLLFQEMLRSGETPNDVTMLSIL--------PACAHLGAIDIGRWIHVYIDKRLK 398
Query: 336 SIDN-----------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
+ N IE A+ +F+ I K++ W ++I +AM G A + DLF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
M + G +PD +TF+ LLSACSH G++D G ++ Y + PK++HYGCM+DLLG
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518
Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
+G +E+ I M + PD IW SLL+AC+ H NV+L E ++L + +P N G++VLL
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578
Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
+NIYA AGR +++++ R L D G+KK G S IE VH+F GD F+P + EIY ML
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638
Query: 559 NEIEMTLQQQGL---------------QETSLQHR-ERLAVAFGLISTSEKTTIRIVNNL 602
E+E+ L++ G +E +L+H E+LA+AFGLIST T + IV NL
Sbjct: 639 EEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 698
Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
R+C +CH K+ S++Y REI+ RD RFH F+ G CSC DYW
Sbjct: 699 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 230/691 (33%), Positives = 366/691 (52%), Gaps = 107/691 (15%)
Query: 59 RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
+IH ++ +D + + F G+L A+++ + E + W S+I
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214
Query: 119 YPQEVFAIYLYLV----------TRTVLLNKCGKLKEV---------------------- 146
+ ++ ++ +V T +++ C KL+++
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274
Query: 147 ---------C-------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
C +LFD+ ++ N M S Y G+ RE LG+ + M GV
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
PD ++M+S IS+ ++LR++ GK+ H ++ + + ++ N L+DMY KC + A ++
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
R + VV W ++V+GYV++ E D A F+ M E+N++SW +ISG++ Q + F+
Sbjct: 395 FDR--MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLV-QGSLFE 451
Query: 311 -------------------------YKSCASIGALYHGIWVHVYIKKNQISID------- 338
+C +GAL W++ YI+KN I +D
Sbjct: 452 EAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTL 511
Query: 339 --------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
+ E A +F+ ++ ++V WT+ I A AMAG+A++AI+LF +M E G KPD
Sbjct: 512 VDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571
Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
V F+ L+ACSHGGLV +G + +++ + P+ HYGCMVDLLGRAG LEE+ I
Sbjct: 572 VAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE 631
Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
MP+ P+ IW+SLL ACR NV++A +A + + P G++VLL+N+YA AGR +D
Sbjct: 632 DMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWND 691
Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG- 569
M+++R+ +++ GL+K G S I+ G H+FTSGD +P I ML+E+ G
Sbjct: 692 MAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGH 751
Query: 570 ---LQETSL------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
L + +H E+LA+A+GLIS+++ TTIRIV NLR+C DCHSF K
Sbjct: 752 VPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKF 811
Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
S+VYNREI++RDN RFH + G+CSC D+W
Sbjct: 812 ASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 127/262 (48%), Gaps = 34/262 (12%)
Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
+N++I Y S G+ E + L +M G+SPD+ T +SA K R G +H +
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
+ + N LV Y +CG++ A+K+ E+ E +VV WT+++ GY + + +A
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFD--EMSERNVVSWTSMICGYARRDFAKDA 219
Query: 281 RRLF-----DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
LF DE V N ++ +IS +CA + L G V+ +I+ + I
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVIS------------ACAKLEDLETGEKVYAFIRNSGI 267
Query: 336 SIDN---------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
+++ I++A LF E N+ L ++ + Y G ++A+ +F
Sbjct: 268 EVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNL 327
Query: 381 MEETGTKPDQVTFIALLSACSH 402
M ++G +PD+++ ++ +S+CS
Sbjct: 328 MMDSGVRPDRISMLSAISSCSQ 349
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 338 DNIELAYDLFSEISEK--NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
+++ A ++F E SE +++ S+I YA +G +AI LFL M +G PD+ TF
Sbjct: 81 ESLSFAKEVF-ENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPF 139
Query: 396 LLSACS-----------HGGLVDEGY--DFLSKKSRVY 420
LSAC+ HG +V GY D + S V+
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVH 177
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/674 (30%), Positives = 345/674 (51%), Gaps = 87/674 (12%)
Query: 50 SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
S S+ E++H ++ + + + F + + A+++ + E ++ WNS
Sbjct: 207 SLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 266
Query: 110 IIENQLINGYPQEVFAIYLYLVTRTV---------------------------------- 135
II + NG ++ ++++ ++ +
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC 326
Query: 136 -------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
+ +KCG L +F ++ +R V+S+ +MI+ Y G+ E + L
Sbjct: 327 FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 386
Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
+M EG+SPD T+ ++++ + R L+ GK +H +++E+ + + N L+DMY KCG
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446
Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
+ EA+ + + D++ W T++ GY K+ +EA LF+ ++E S
Sbjct: 447 SMQEAELVFSEMRVK--DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPD------ 498
Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLF 347
+ +CAS+ A G +H YI +N D + LA+ LF
Sbjct: 499 -ERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557
Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
+I+ K++ WT +IA Y M G ++AI LF +M + G + D+++F++LL ACSH GLVD
Sbjct: 558 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617
Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
EG+ F + I+P ++HY C+VD+L R G L ++ FI +MPIPPD +IW +LL
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677
Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
CR H +VKLAE + + E +P N G +VL+ANIYA+A + + + R+R ++ GL+K
Sbjct: 678 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 737
Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
G S IE G V+ F +GD NP +E I L ++ + ++G +
Sbjct: 738 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 797
Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
E H E+LA+A G+IS+ IR+ NLR+CGDCH K S++ REIV+RD+ RF
Sbjct: 798 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 857
Query: 632 HRFQGGQCSCRDYW 645
H+F+ G CSCR +W
Sbjct: 858 HQFKDGHCSCRGFW 871
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 171/349 (48%), Gaps = 31/349 (8%)
Query: 134 TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
+++ CG LKE ++FD++ + WN +++ G + +GL KM + GV D
Sbjct: 136 SLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDS 195
Query: 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253
T + + + LR + G+ LH F+ +S S+ N LV Y K ++ A+K+
Sbjct: 196 YTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFD- 254
Query: 254 YEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEF 309
E+ E DV+ W ++++GYV + ++ +F +M +E +L + + +G +
Sbjct: 255 -EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS---- 309
Query: 310 KYKSCASIGALYHGIWVHVYIKKNQ----------ISIDNIELAYDLFSEISEKNVYLWT 359
S+G H I V + +++ A +F E+S+++V +T
Sbjct: 310 ---RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYT 366
Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKK 416
S+IA YA G A +A+ LF EMEE G PD T A+L+ C+ L+DEG ++++ +
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN 426
Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
++I ++D+ + G ++E+ + M + D+ W++++
Sbjct: 427 DLGFDIFVS----NALMDMYAKCGSMQEAELVFSEMRV-KDIISWNTII 470
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/449 (21%), Positives = 185/449 (41%), Gaps = 76/449 (16%)
Query: 131 VTRTVLLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
V + V+ N+ L+ V D + +R V NT + + G + LL G
Sbjct: 33 VRKYVIFNR-ASLRTVSDCVDSITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWD 91
Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
+ P T+ S++ + L+ GK + F+ + I +L + L MY CG + EA
Sbjct: 92 IDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEAS 149
Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE 308
++ +I++ + W L++ KS + + LF +M M SG+
Sbjct: 150 RVFDEVKIEK--ALFWNILMNELAKSGDFSGSIGLFKKM----------MSSGVEMDSYT 197
Query: 309 FK--YKSCASIGALYHGIWVHVYIKKNQI----SIDN-----------IELAYDLFSEIS 351
F KS +S+ +++ G +H +I K+ S+ N ++ A +F E++
Sbjct: 198 FSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMT 257
Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG-- 409
E++V W S+I Y G A+K + +F++M +G + D T +++ + C+ L+ G
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317
Query: 410 --------------------YDFLSKKSRVYNIKPKMQH--------YGCMVDLLGRAGH 441
D SK + + K + Y M+ R G
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377
Query: 442 LEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
E+ M I PDV +++L C ++ + + + + E D G + +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL---GFDIFV 434
Query: 499 AN----IYAKAGRLDDMSRI--RMKLRDM 521
+N +YAK G + + + M+++D+
Sbjct: 435 SNALMDMYAKCGSMQEAELVFSEMRVKDI 463
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 217/679 (31%), Positives = 345/679 (50%), Gaps = 91/679 (13%)
Query: 46 MVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
++ +C+ ++ ++IH LI +L D + + + +F Y+ + P I
Sbjct: 19 LISVACT-VNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIF 77
Query: 106 IWNSIIENQLINGYPQEVF---------AIYLYLVTRTVLLNKC---------------- 140
++NS+I + N E +YL+ T ++L C
Sbjct: 78 LYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLV 137
Query: 141 ----------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
G+L + +LFD++P+R V++W + S YT+ G +RE +
Sbjct: 138 VKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAI 197
Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
L KM GV PD +V ++SA + DL+ G+ + ++EE M+ + + LV++Y
Sbjct: 198 DLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLY 257
Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
KCGK+ +A+ + + E D+V W+T++ GY ++ E LF +M++ NL
Sbjct: 258 AKCGKMEKARSVFD--SMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315
Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA--------------- 343
I G L+ SCAS+GAL G W I +++ + N+ +A
Sbjct: 316 IVGFLS--------SCASLGALDLGEWGISLIDRHEF-LTNLFMANALIDMYAKCGAMAR 366
Query: 344 -YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
+++F E+ EK++ + + I+ A GH + + +F + E+ G PD TF+ LL C H
Sbjct: 367 GFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVH 426
Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
GL+ +G F + S VY +K ++HYGCMVDL GRAG L+++ I MP+ P+ +W
Sbjct: 427 AGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWG 486
Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
+LL CR ++ +LAE K L +P N G +V L+NIY+ GR D+ + +R + G
Sbjct: 487 ALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKG 546
Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL------- 575
+KK GYS IE G VH+F + D +P S++IY L ++ ++ G T+
Sbjct: 547 MKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVE 606
Query: 576 ---------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
H E+LAVA GLIST IR+V NLR+CGDCH MK+ S++ REIV+R
Sbjct: 607 EEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVR 666
Query: 627 DNGRFHRFQGGQCSCRDYW 645
DN RFH F G CSC DYW
Sbjct: 667 DNNRFHCFTNGSCSCNDYW 685
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/670 (31%), Positives = 348/670 (51%), Gaps = 91/670 (13%)
Query: 56 EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
+ ++IH+ L+ L + T++ GD+ +A+Q+ P+I WN+II
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95
Query: 116 INGYPQEVFAIYLYLVTRTV---------------------------------------- 135
N + Q+ +Y + V
Sbjct: 96 RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155
Query: 136 -------LLNKCGKLKEVCQLFD--KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
L KC +L +F+ LP R ++SW ++S Y G E L + S+M
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215
Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
V PD V +VS+++A T L+DL+ G+++H + + ++I LL L MY KCG++
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275
Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
A+ L + + +++LW ++SGY K+ EA +F EM+ +++ T+ I+ ++
Sbjct: 276 AKILFDK--MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS-- 331
Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
+CA +G+L ++ Y+ ++ D ++E A +F
Sbjct: 332 ------ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385
Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
+++V +W+++I Y + G A++AI L+ ME G P+ VTF+ LL AC+H G+V EG+
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
F ++ + + I P+ QHY C++DLLGRAGHL+++ I MP+ P V++W +LL AC+ H
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
++V+L E+A + L DP N G +V L+N+YA A D ++ +R+++++ GL K +G S
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL 575
+E G + F GD +P EEI + IE L++ G +ET
Sbjct: 565 VEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLC 624
Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
H ER+A+A+GLIST + T +RI NLR C +CH+ K+ S++ +REIV+RD RFH F+
Sbjct: 625 SHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFK 684
Query: 636 GGQCSCRDYW 645
G CSC DYW
Sbjct: 685 DGVCSCGDYW 694
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/566 (34%), Positives = 310/566 (54%), Gaps = 62/566 (10%)
Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
CG++ +FD++ +RDV++WNTMI Y G+ E L +M V PDE+ + ++
Sbjct: 159 CGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNI 218
Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
+SA + ++ + ++ FL E+ +++ LL LV MY G + A++ + +
Sbjct: 219 VSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR-- 276
Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--------- 310
++ + T +VSGY K D+A+ +FD+ +++L+ WT MIS + D +
Sbjct: 277 NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC 336
Query: 311 --------------YKSCASIGALYHGIWVHVYIKKN----QISIDN-----------IE 341
+CA++G L WVH I N ++SI+N ++
Sbjct: 337 CSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLD 396
Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
D+F ++ +NV W+S+I A +M G A A+ LF M++ +P++VTF+ +L CS
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456
Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
H GLV+EG + + YNI PK++HYGCMVDL GRA L E+ I SMP+ +V IW
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516
Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
SL+ ACR H ++L + A K + E +P +DGA VL++NIYA+ R +D+ IR + +
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEK 576
Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------- 570
+ K+ G S I+Q G H+F GD + S EIY L+E+ L+ G
Sbjct: 577 NVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDV 636
Query: 571 -----QETSLQHRERLAVAFGLISTSEKT------TIRIVNNLRICGDCHSFMKVTSQVY 619
++ L H E+LA+ FGL++ ++ IRIV NLR+C DCH F K+ S+VY
Sbjct: 637 EEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVY 696
Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
REI++RD RFH ++ G CSCRDYW
Sbjct: 697 EREIIVRDRTRFHCYKNGLCSCRDYW 722
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/534 (34%), Positives = 304/534 (56%), Gaps = 41/534 (7%)
Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
+ V ++F+ +P +DV+S+NT+I+ Y GMY + L ++ +MG + PD T+ S++
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
++ D+ GK +H ++ + + + LVDMY K +I +++++ R D +
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR--DGI 309
Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
W +LV+GYV++ +EA RLF +MV + + S ++ +CA + L+
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVI--------PACAHLATLHL 361
Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
G +H Y+ + + NI+ A +F ++ + WT++I +A+
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421
Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
GH +A+ LF EM+ G KP+QV F+A+L+ACSH GLVDE + + + ++VY + +++
Sbjct: 422 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELE 481
Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
HY + DLLGRAG LEE+ NFI+ M + P S+WS+LL +C H+N++LAE + +
Sbjct: 482 HYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTV 541
Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
D N GA+VL+ N+YA GR +M+++R+++R GL+K+ S IE H F SGD
Sbjct: 542 DSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRS 601
Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTS 591
+P ++I L + ++++G +E H ERLAVAFG+I+T
Sbjct: 602 HPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTE 661
Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
TTIR+ N+RIC DCH +K S++ REI++RDN RFH F G CSC DYW
Sbjct: 662 PGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/441 (23%), Positives = 188/441 (42%), Gaps = 84/441 (19%)
Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
F L + V++W ++I C+T ++ + L +M A G PD S++ + T + DL
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG------------------------ 245
G+++H F+ M N L++MY K +G
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 246 EAQKLLGRYEIDEV----------DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISW 295
+A+ + + ID V DVV + T+++GY +S ++A R+ EM +L
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 296 TLMISGMLNQDAEF----KYKSCASIGALYHGIWVHVYIKKNQISI----DNIELAYDLF 347
+ +S +L +E+ K K + GI VYI + + + IE + +F
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGY-VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS------ 401
S + ++ W S++A Y G +A+ LF +M KP V F +++ AC+
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360
Query: 402 -----HGGLVDEGYD---FLSKK-----SRVYNIKPKMQHYGCM---------VDLLGRA 439
HG ++ G+ F++ S+ NIK + + M ++G A
Sbjct: 361 LGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHA 420
Query: 440 --GHLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHA---FKHLTETDPLN 491
GH E+ + M + P+ + ++L AC +V L + A F +T+ LN
Sbjct: 421 LHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTAC---SHVGLVDEAWGYFNSMTKVYGLN 477
Query: 492 D--GAHVLLANIYAKAGRLDD 510
+ +A++ +AG+L++
Sbjct: 478 QELEHYAAVADLLGRAGKLEE 498
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
+ +KCG +K ++FD++ D +SW +I + G E + L +M +GV P++V
Sbjct: 387 MYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVA 446
Query: 196 MVSLISA--RTKLRDLEMGKNLHLFLEESTMKISG---SLLNY--LVDMYFKCGKIGEAQ 248
V++++A L D G S K+ G L +Y + D+ + GK+ EA
Sbjct: 447 FVAVLTACSHVGLVDEAWG------YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAY 500
Query: 249 KLLGRYEIDEVDVVLWTTLVS 269
+ + ++ V W+TL+S
Sbjct: 501 NFISKMCVEPTGSV-WSTLLS 520
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 210/646 (32%), Positives = 343/646 (53%), Gaps = 83/646 (12%)
Query: 58 ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
+++HS ++ L + +S + GD A+ + + +I WN++I
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI------ 219
Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
A+++ + G++ F+++ RD+++WN+MIS + G
Sbjct: 220 -------ALHM----------QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRA 262
Query: 178 LGLLSKMGAEGV-SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
L + SKM + + SPD T+ S++SA L L +GK +H + + ISG +LN L+
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALIS 322
Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
MY +CG + A++L+ + ++ + +T L+ GY+K + ++A+ +F + +R++++WT
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382
Query: 297 LMISGMLNQ----DAEFKYKSCASIG-------------------ALYHGIWVH-VYIKK 332
MI G +A ++S G +L HG +H +K
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS 442
Query: 333 NQI-----------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
+I +I + A+DL E++ WTS+I A A GHA++A+
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSASRAFDLIR--CERDTVSWTSMIIALAQHGHAEEAL 500
Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
+LF M G +PD +T++ + SAC+H GLV++G + V I P + HY CMVDL
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL 560
Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
GRAG L+E+ FI MPI PDV W SLL ACR H+N+ L + A + L +P N GA+
Sbjct: 561 FGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAY 620
Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
LAN+Y+ G+ ++ ++IR ++D +KK+ G+S IE VH F D +P EIY
Sbjct: 621 SALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIY 680
Query: 556 LMLNEIEMTLQQQG---------------LQETSLQHR-ERLAVAFGLISTSEKTTIRIV 599
+ + +I +++ G ++E L+H E+LA+AFGLIST +KTT+RI+
Sbjct: 681 MTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIM 740
Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
NLR+C DCH+ +K S++ REI++RD RFH F+ G CSCRDYW
Sbjct: 741 KNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 113/542 (20%), Positives = 218/542 (40%), Gaps = 119/542 (21%)
Query: 85 FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL-------- 136
FT L + + +I+ G + + N+++ GY ++ + RT
Sbjct: 31 FTAQLVHCR-VIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSA 89
Query: 137 LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
+K G + C+ FD+LP RD +SW TMI Y ++G Y + + ++ M EG+ P + T+
Sbjct: 90 YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTL 149
Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
+++++ R +E GK +H F+ + ++ + S+ N L++MY KCG A+ + R +
Sbjct: 150 TNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVV 209
Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK------ 310
D+ W +++ +++ + D A F++M ER++++W MISG + + +
Sbjct: 210 R--DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFS 267
Query: 311 ------------------YKSCASIGALYHGIWVHVYIKKNQISIDNI------------ 340
+CA++ L G +H +I I I
Sbjct: 268 KMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC 327
Query: 341 ----------------ELAYDLFSEI-----------SEKNVYL---------WTSVIAA 364
+L + F+ + KN+++ WT++I
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVG 387
Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEGYDF- 412
Y G +AI+LF M G +P+ T A+LS S HG V G +
Sbjct: 388 YEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS 447
Query: 413 ----------------LSKKSRVYNI---KPKMQHYGCMVDLLGRAGHLEESANFITSM- 452
++ SR +++ + + M+ L + GH EE+ +M
Sbjct: 448 VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507
Query: 453 --PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYAKAGRL 508
+ PD + + AC V F + + D + + + +++ +AG L
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567
Query: 509 DD 510
+
Sbjct: 568 QE 569
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 357 bits (917), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 223/681 (32%), Positives = 336/681 (49%), Gaps = 98/681 (14%)
Query: 47 VERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
V ++C ++ + +IH + M D ++ + +G A+ + + ++
Sbjct: 159 VLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGS 218
Query: 107 WNSIIENQLINGYPQEVFAIYLYL-----VTRTVLLNKC--------------------- 140
WN++I +G +E + L VT LL+ C
Sbjct: 219 WNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 278
Query: 141 -----------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
G+L++ ++FD++ RD+ISWN++I Y + L +
Sbjct: 279 ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 338
Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH-------LFLEESTMKISGSLLNYLVD 236
M + PD +T++SL S ++L D+ +++ FLE+ T+ N +V
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIG------NAVVV 392
Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
MY K G + A+ + + DV+ W T++SGY ++ EA +++ M E I+
Sbjct: 393 MYAKLGLVDSARAVFNW--LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA-- 448
Query: 297 LMISGMLNQDAEFKY-KSCASIGALYHGIWVHVYIKKNQISID---------------NI 340
NQ +C+ GAL G+ +H + KN + +D +
Sbjct: 449 ------ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRL 502
Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
E A LF +I N W ++IA + GH +KA+ LF EM + G KPD +TF+ LLSAC
Sbjct: 503 EDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 562
Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
SH GLVDEG Y I P ++HYGCMVD+ GRAG LE + FI SM + PD SI
Sbjct: 563 SHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASI 622
Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
W +LL ACR H NV L + A +HL E +P + G HVLL+N+YA AG+ + + IR
Sbjct: 623 WGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHG 682
Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQE 572
GL+K G+S +E V F +G+ +P EE+Y L ++ L+ G LQ+
Sbjct: 683 KGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQD 742
Query: 573 TS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
+ H ERLA+AF LI+T KTTIRI NLR+CGDCHS K S++ REI+
Sbjct: 743 VEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREII 802
Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
+RD+ RFH F+ G CSC DYW
Sbjct: 803 VRDSNRFHHFKNGVCSCGDYW 823
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/450 (22%), Positives = 174/450 (38%), Gaps = 71/450 (15%)
Query: 105 KIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164
+I N I +L+N +Y YL G + FD + NRDV +WN M
Sbjct: 82 QIQNVCISAKLVN--------LYCYL----------GNVALARHTFDHIQNRDVYAWNLM 123
Query: 165 ISCYTSMGMYREGLGLLSK-MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
IS Y G E + S M + G++PD T S++ A + D G +H +
Sbjct: 124 ISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFG 180
Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
+ L+ +Y + +G A+ L E+ D+ W ++SGY +S EA L
Sbjct: 181 FMWDVYVAASLIHLYSRYKAVGNARILFD--EMPVRDMGSWNAMISGYCQSGNAKEALTL 238
Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----DN 339
+ + + ++ ++S + +F ++ HG+ +++ I +
Sbjct: 239 SNGLRAMDSVTVVSLLSA-CTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGR 297
Query: 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS- 398
+ +F + +++ W S+I AY + +AI LF EM + +PD +T I+L S
Sbjct: 298 LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASI 357
Query: 399 --------ACS--HGGLVDEGY------------------DFLSKKSRVYNIKPKMQ--H 428
AC G + +G+ + V+N P
Sbjct: 358 LSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVIS 417
Query: 429 YGCMVDLLGRAGHLEESANFITSM----PIPPDVSIWSSLLRACR----CHQNVKLAEHA 480
+ ++ + G E+ M I + W S+L AC Q +KL
Sbjct: 418 WNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRL 477
Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
K+ D LA++Y K GRL+D
Sbjct: 478 LKNGLYLDVF---VVTSLADMYGKCGRLED 504
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 355 bits (912), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 199/567 (35%), Positives = 307/567 (54%), Gaps = 69/567 (12%)
Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGL---LSKMGAEGVSPDEVTMVSLISART 204
++F+++P R+ SWNT+I ++ + + + M E V P+ T S++ A
Sbjct: 80 KIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACA 139
Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID------- 257
K ++ GK +H + +++ LV MY CG + +A+ L + I+
Sbjct: 140 KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMT 199
Query: 258 -----EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------- 301
+ ++VLW ++ GY++ + AR LFD+M +R+++SW MISG
Sbjct: 200 DRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAV 259
Query: 302 -----MLNQDAEFKYKSCASI-------GALYHGIWVHVYIKKNQISIDN---------- 339
M D Y + S+ G+L G W+H+Y + + I ID+
Sbjct: 260 EVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMY 319
Query: 340 -----IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394
IE A +F + +NV W+++I +A+ G A AID F +M + G +P V +I
Sbjct: 320 SKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYI 379
Query: 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI 454
LL+ACSHGGLV+EG + S+ V ++P+++HYGCMVDLLGR+G L+E+ FI +MPI
Sbjct: 380 NLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPI 439
Query: 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514
PD IW +LL ACR NV++ + L + P + GA+V L+N+YA G ++S +
Sbjct: 440 KPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEM 499
Query: 515 RMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETS 574
R+++++ ++K G SLI+ G +H+F D +P ++EI ML EI L+ G + +
Sbjct: 500 RLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPIT 559
Query: 575 LQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQV 618
Q H E++A AFGLISTS IRIV NLRIC DCHS +K+ S+V
Sbjct: 560 TQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKV 619
Query: 619 YNREIVIRDNGRFHRFQGGQCSCRDYW 645
Y R+I +RD RFH FQ G CSC DYW
Sbjct: 620 YKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
+ +KCG +++ +F++LP +VI+W+ MI+ + G + + KM GV P +V
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377
Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGR 253
++L++A + +E G+ + S + + +Y +VD+ + G + EA++ +
Sbjct: 378 YINLLTACSHGGLVEEGRR-YFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILN 436
Query: 254 YEIDEVDVVLWTTLVSG 270
I DV+ W L+
Sbjct: 437 MPIKPDDVI-WKALLGA 452
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 206/586 (35%), Positives = 309/586 (52%), Gaps = 74/586 (12%)
Query: 92 AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFD 151
A+Q + ++ WN+II GY Q GK+ E QLFD
Sbjct: 238 ARQFFDSMNVRDVVSWNTII-----TGYAQS------------------GKIDEARQLFD 274
Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
+ P +DV +W M+S Y M E L KM +EV+ ++++ + +EM
Sbjct: 275 ESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEM 330
Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
K L + + S N ++ Y +CGKI EA+ L + + + D V W +++GY
Sbjct: 331 AKELFDVMPCRNV----STWNTMITGYAQCGKISEAKNLFDK--MPKRDPVSWAAMIAGY 384
Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA-EFKYKSCASIGALYHGIWVHVYI 330
+S EA RLF +M ER G LN+ + +CA + AL G +H +
Sbjct: 385 SQSGHSFEALRLFVQM-ERE--------GGRLNRSSFSSALSTCADVVALELGKQLHGRL 435
Query: 331 KKNQ---------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
K +IE A DLF E++ K++ W ++IA Y+ G + A+
Sbjct: 436 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVAL 495
Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
F M+ G KPD T +A+LSACSH GLVD+G + ++ Y + P QHY CMVDL
Sbjct: 496 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDL 555
Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
LGRAG LE++ N + +MP PD +IW +LL A R H N +LAE A + +P N G +
Sbjct: 556 LGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMY 615
Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
VLL+N+YA +GR D+ ++R+++RD G+KK GYS IE H F+ GD F+P +EI+
Sbjct: 616 VLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIF 675
Query: 556 LMLNEIEMTLQQQG-LQETSL---------------QHRERLAVAFGLISTSEKTTIRIV 599
L E+++ +++ G + +TS+ H ERLAVA+G++ S IR++
Sbjct: 676 AFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVI 735
Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
NLR+C DCH+ +K +++ R I++RDN RFH F+ G CSC DYW
Sbjct: 736 KNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 127/556 (22%), Positives = 229/556 (41%), Gaps = 112/556 (20%)
Query: 107 WNSIIENQLINGY----------------PQEVFAIYLYLVTRTVLLNKCGKLKEVCQLF 150
W+S+ N +I+GY P+ + ++ V GK +E LF
Sbjct: 93 WSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARE---LF 149
Query: 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210
+ +P RDV SWNTM+S Y G + + +M + ++V+ +L+SA + +E
Sbjct: 150 EIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKME 205
Query: 211 MGKNLHLFLEESTMKISGSLL---------------------------NYLVDMYFKCGK 243
L E + LL N ++ Y + GK
Sbjct: 206 EACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK 265
Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
I EA++L + DV WT +VSGY+++ +EAR LFD+M ERN +SW M++G +
Sbjct: 266 IDEARQLFDESPVQ--DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYV 323
Query: 304 NQDAE------FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYL 357
+ F C ++ I + K I A +LF ++ +++
Sbjct: 324 QGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK-------ISEAKNLFDKMPKRDPVS 376
Query: 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLV 406
W ++IA Y+ +GH+ +A+ LF++ME G + ++ +F + LS C+ HG LV
Sbjct: 377 WAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 436
Query: 407 DEGYD---FLSKKSRVYNIK----------------PKMQHYGCMVDLLGRAGHLEESAN 447
GY+ F+ + K + + M+ R G E +
Sbjct: 437 KGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALR 496
Query: 448 FITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIY 502
F SM + PD + ++L AC V F +T+ + N + + ++
Sbjct: 497 FFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLL 556
Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQ-------LGYSLIEQGGFVHKFTSGDIF--NPHSEE 553
+AG L+D + +++M + LG S + + + + IF P +
Sbjct: 557 GRAGLLEDAHNL---MKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSG 613
Query: 554 IYLMLNEIEMTLQQQG 569
+Y++L+ + + + G
Sbjct: 614 MYVLLSNLYASSGRWG 629
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 48/261 (18%)
Query: 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291
N + Y + G+ EA ++ R + V + ++SGY+++ E + AR+LFDEM ER+
Sbjct: 68 NVAISSYMRTGRCNEALRVFKR--MPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERD 125
Query: 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS 351
L+SW +MI G Y++ N+ A +LF +
Sbjct: 126 LVSWNVMIKG---------------------------YVRNR-----NLGKARELFEIMP 153
Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
E++V W ++++ YA G A +F M E + V++ ALLSA ++E
Sbjct: 154 ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACM 209
Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
+ + + C++ + + E+ F SM + DV W++++
Sbjct: 210 LFKSRENW-----ALVSWNCLLGGFVKKKKIVEARQFFDSMNV-RDVVSWNTIITG--YA 261
Query: 472 QNVKLAEHAFKHLTETDPLND 492
Q+ K+ E + L + P+ D
Sbjct: 262 QSGKIDEA--RQLFDESPVQD 280
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 200/552 (36%), Positives = 290/552 (52%), Gaps = 57/552 (10%)
Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
+FD D WN MI ++ L L +M + T SL+ A + L
Sbjct: 71 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA 130
Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
E +H + + + +N L++ Y G A L R I E D V W +++
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDR--IPEPDDVSWNSVI 188
Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQDAE---- 308
GYVK+ + D A LF +M E+N ISWT MISG M N D E
Sbjct: 189 KGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNV 248
Query: 309 ---FKYKSCASIGALYHGIWVHVYIKKNQISIDNI---------------ELAYDLFSEI 350
+CA +GAL G W+H Y+ K +I +D++ E A ++F I
Sbjct: 249 SLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNI 308
Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
+K+V WT++I+ YA GH ++AI F+EM++ G KP+ +TF A+L+ACS+ GLV+EG
Sbjct: 309 KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGK 368
Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
R YN+KP ++HYGC+VDLLGRAG L+E+ FI MP+ P+ IW +LL+ACR
Sbjct: 369 LIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRI 428
Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
H+N++L E + L DP + G +V ANI+A + D + R +++ G+ K G S
Sbjct: 429 HKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCS 488
Query: 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG----LQETSL----------- 575
I G H+F +GD +P E+I + L++ G L+E L
Sbjct: 489 TISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAI 548
Query: 576 --QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
QH E+LA+ +GLI T T IRI+ NLR+C DCH K+ S++Y R+IV+RD RFH
Sbjct: 549 VHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHH 608
Query: 634 FQGGQCSCRDYW 645
F+ G+CSC DYW
Sbjct: 609 FRDGKCSCGDYW 620
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 352 bits (903), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 197/535 (36%), Positives = 303/535 (56%), Gaps = 50/535 (9%)
Query: 148 QLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTK 205
++F K+ +V WNT+I Y +G L +M G V PD T LI A T
Sbjct: 74 KVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTT 133
Query: 206 LRDLEMGKNLHLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
+ D+ +G+ +H + S GSL+ N L+ +Y CG + A K+ + + E D+V
Sbjct: 134 MADVRLGETIHSVVIRSGF---GSLIYVQNSLLHLYANCGDVASAYKVFDK--MPEKDLV 188
Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
W ++++G+ ++ + +EA L+ EM + + I +L+ +CA IGAL
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLS--------ACAKIGALTL 240
Query: 323 GIWVHVYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
G VHVY+ K + + +D +E A LF E+ +KN WTS+I A+
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 368 AGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
G ++AI+LF ME T G P ++TF+ +L ACSH G+V EG+++ + Y I+P++
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI 360
Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
+H+GCMVDLL RAG ++++ +I SMP+ P+V IW +LL AC H + LAE A + +
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ 420
Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
+P + G +VLL+N+YA R D+ +IR ++ G+KK G+SL+E G VH+F GD
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDK 480
Query: 547 FNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLIST 590
+P S+ IY L E+ L+ +G + + H E++A+AF LIST
Sbjct: 481 SHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIST 540
Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
E++ I +V NLR+C DCH +K+ S+VYNREIV+RD RFH F+ G CSC+DYW
Sbjct: 541 PERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 139/304 (45%), Gaps = 23/304 (7%)
Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
+S+ TKLR + H + S ++ L+ YLV + + A K+ + E +
Sbjct: 27 VSSITKLRQIHAFSIRH-GVSISDAELGKHLIFYLVSLP-SPPPMSYAHKVFSKIE-KPI 83
Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEM-----VERNLISWTLMISGMLNQDAEFKYKSC 314
+V +W TL+ GY + A L+ EM VE + ++ +I + A+ +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTM-ADVRLGET 142
Query: 315 ASIGALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH 370
+ G +Y++ + + + ++ AY +F ++ EK++ W SVI +A G
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK----PKM 426
++A+ L+ EM G KPD T ++LLSAC+ G + L K+ VY IK +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALT-----LGKRVHVYMIKVGLTRNL 257
Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
++DL R G +EE+ M VS W+SL+ + K A FK++
Sbjct: 258 HSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVS-WTSLIVGLAVNGFGKEAIELFKYMES 316
Query: 487 TDPL 490
T+ L
Sbjct: 317 TEGL 320
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 50/272 (18%)
Query: 58 ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
E IHS +I + + + GD+ A ++ + E ++ WNS+I N
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200
Query: 118 GYPQEVFAIY-----------------------------------LYLV---------TR 133
G P+E A+Y +Y++ +
Sbjct: 201 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 260
Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGV 189
VLL+ +CG+++E LFD++ +++ +SW ++I G +E + L M EG+
Sbjct: 261 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 320
Query: 190 SPDEVTMVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
P E+T V ++ A + ++ G + EE ++ +VD+ + G++ +A
Sbjct: 321 LPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAY 380
Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
+ + + + +VV+W TL+ + D A
Sbjct: 381 EYIKSMPM-QPNVVIWRTLLGACTVHGDSDLA 411
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 39 PVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
P ++ + +C+ I +R+H ++I L R+ S + + G + A+ +
Sbjct: 220 PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 279
Query: 96 IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLL-------------NKCGK 142
+ + W S+I +NG+ +E ++ Y+ + LL + CG
Sbjct: 280 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 339
Query: 143 LKEVCQLFDKL 153
+KE + F ++
Sbjct: 340 VKEGFEYFRRM 350
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 352 bits (902), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 201/571 (35%), Positives = 302/571 (52%), Gaps = 70/571 (12%)
Query: 141 GKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
G++ +LFD++P +D + W T++S ++ G+ + L +M + V D+V++V
Sbjct: 57 GEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVC 116
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
L KL DL + H + + S + N L+DMY KCG + E +++ E++E
Sbjct: 117 LFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIF--EELEE 174
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD---------AEF 309
VV WT ++ VK + R +F EM ERN ++WT+M++G L AE
Sbjct: 175 KSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEM 234
Query: 310 KYK---------------SCASIGALYHGIWVHVYIKKNQISID---------------- 338
++ +CA G L G WVHVY K ++ +
Sbjct: 235 VFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVD 294
Query: 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
NI+ + ++F + ++NV W ++ + AM G + ID+F +M KPD +T
Sbjct: 295 MYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLT 353
Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452
F A+LSACSH G+VDEG+ R Y ++PK+ HY CMVDLLGRAG +EE+ + M
Sbjct: 354 FTAVLSACSHSGIVDEGWRCF-HSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREM 412
Query: 453 PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512
P+PP+ + SLL +C H V++AE + L + P N +L++N+Y GR D
Sbjct: 413 PVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIAD 472
Query: 513 RIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL-- 570
+R LR G++K G S I VH+F+SGD +P ++EIYL LNE+ ++ G
Sbjct: 473 GLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVP 532
Query: 571 --------QETSLQ--------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
E L+ H E+LAV FGL+ T T + + NLRIC DCHS MK+
Sbjct: 533 DVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKI 592
Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
S+VY+REI+IRD RFH+F+GG CSC DYW
Sbjct: 593 VSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 83/374 (22%), Positives = 151/374 (40%), Gaps = 60/374 (16%)
Query: 209 LEMGKNLHLFLEESTMKIS--GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
L GK LH L S +K + L N L Y G++ AQKL + E D V WTT
Sbjct: 22 LRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTT 81
Query: 267 LVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKY----------- 311
L+S + + + +LF EM VE + +S + + G+ + + +
Sbjct: 82 LLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVS-VVCLFGVCAKLEDLGFAQQGHGVAVKM 140
Query: 312 ------KSCASIGALYHGIWVHVYIKK------------------NQISIDNIELAYDLF 347
K C ++ +Y + +K+ + + +E ++F
Sbjct: 141 GVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVF 200
Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLV 406
E+ E+N WT ++A Y AG ++ ++L EM G + VT ++LSAC+ G +
Sbjct: 201 HEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNL 260
Query: 407 DEGYDFLSKKSRVYNIKPKMQH-----------YGCMVDLLGRAGHLEESANFITSMPIP 455
G + VY +K +M +VD+ + G+++ S N M
Sbjct: 261 VVG-----RWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMR-K 314
Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
+V W++L H ++ F + +D + + + +G +D+ R
Sbjct: 315 RNVVTWNALFSGLAMHGKGRMVIDMFPQMIREVKPDDLTFTAVLSACSHSGIVDEGWRCF 374
Query: 516 MKLRDMGLKKQLGY 529
LR GL+ ++ +
Sbjct: 375 HSLRFYGLEPKVDH 388
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
KCG + +F + R+V++WN + S G R + + +M E V PD++T +
Sbjct: 298 KCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTA 356
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
++SA + ++ G L ++ +VD+ + G I EA+ L+ +
Sbjct: 357 VLSACSHSGIVDEGWRCFHSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPP 416
Query: 259 VDVVLWTTL----VSGYVKSNER 277
+VVL + L V G V+ ER
Sbjct: 417 NEVVLGSLLGSCSVHGKVEIAER 439
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 349 bits (896), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 194/564 (34%), Positives = 322/564 (57%), Gaps = 34/564 (6%)
Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
+ + GY ++F +V + + CGKL++ ++FD++P R+++SW +MI Y
Sbjct: 100 QQAFVFGYQSDIFVSSALIV----MYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155
Query: 172 GMYREGLGLLSKM------GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
G + + L + + + D + +VS+ISA +++ + +++H F+ +
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFD 215
Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
S+ N L+D Y K G+ G A +I + D V + +++S Y +S +EA +F
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275
Query: 286 EMVERNLISW-TLMISGML---NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI---- 337
+V+ ++++ + +S +L + + C + G+ V + + I +
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335
Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
+E A F + KNV WT++IA Y M GHA KA++LF M ++G +P+ +TF+++L
Sbjct: 336 GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395
Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
+ACSH GL EG+ + + + ++P ++HYGCMVDLLGRAG L+++ + I M + PD
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPD 455
Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
IWSSLL ACR H+NV+LAE + L E D N G ++LL++IYA AGR D+ R+RM
Sbjct: 456 SIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMI 515
Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL------- 570
+++ GL K G+SL+E G VH F GD +P E+IY L E+ L + G
Sbjct: 516 MKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSV 575
Query: 571 --------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNR 621
+E +L+ H E+LA+AFG+++T +T+ +V NLR+C DCH+ +K+ S++ +R
Sbjct: 576 CHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDR 635
Query: 622 EIVIRDNGRFHRFQGGQCSCRDYW 645
E V+RD RFH F+ G CSC DYW
Sbjct: 636 EFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
+ + +V+ W SVIA A +G + +A+ F M + P + +F + ACS
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACS------SL 89
Query: 410 YDFLSKK-----SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464
+D S K + V+ + + ++ + G LE++ +P VS W+S+
Sbjct: 90 FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS-WTSM 148
Query: 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
+R + N A FK L + +D A L
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFL 181
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 192/556 (34%), Positives = 305/556 (54%), Gaps = 57/556 (10%)
Query: 130 LVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
+V LLN KCG L+E ++F+K+P RD ++W T+IS Y+ + L ++M
Sbjct: 95 IVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLR 154
Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
G SP+E T+ S+I A R G LH F + + + + L+D+Y + G + +
Sbjct: 155 FGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDD 214
Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
AQ + ++ + V W L++G+ + + ++A LF M+ +
Sbjct: 215 AQLVFD--ALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF------------RP 260
Query: 307 AEFKYKS----CASIGALYHGIWVHVYIKKNQISI---------------DNIELAYDLF 347
+ F Y S C+S G L G WVH Y+ K+ + +I A +F
Sbjct: 261 SHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIF 320
Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
+++++V W S++ AYA G ++A+ F EM G +P++++F+++L+ACSH GL+D
Sbjct: 321 DRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLD 380
Query: 408 EGYDF--LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
EG+ + L KK I P+ HY +VDLLGRAG L + FI MPI P +IW +LL
Sbjct: 381 EGWHYYELMKKD---GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437
Query: 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525
ACR H+N +L +A +H+ E DP + G HV+L NIYA GR +D +R+R K+++ G+KK
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497
Query: 526 QLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL--------------- 570
+ S +E +H F + D +P EEI E+ +++ G
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557
Query: 571 QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNG 629
+E +LQ H E++A+AF L++T +TI I N+R+CGDCH+ +K+ S+V REI++RD
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617
Query: 630 RFHRFQGGQCSCRDYW 645
RFH F+ G CSC+DYW
Sbjct: 618 RFHHFKDGNCSCKDYW 633
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 135/291 (46%), Gaps = 31/291 (10%)
Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
+L+ T + L G+ +H + +S + + N L++MY KCG + EA+K+ + +
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEK--MP 122
Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASI 317
+ D V WTTL+SGY + + +A F++M+ +S ++ A + C
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCC--- 179
Query: 318 GALYHGIWV------HVYIKKNQISI-------DNIELAYDLFSEISEKNVYLWTSVIAA 364
G HG V +V++ + + D+ +L +D + +N W ++IA
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFD---ALESRNDVSWNALIAG 236
Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
+A +KA++LF M G +P ++ +L ACS G +++G K Y IK
Sbjct: 237 HARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-----KWVHAYMIKS 291
Query: 425 --KMQHYG--CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
K+ + ++D+ ++G + ++ + DV W+SLL A H
Sbjct: 292 GEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQH 341
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 346 bits (888), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 197/655 (30%), Positives = 333/655 (50%), Gaps = 79/655 (12%)
Query: 39 PVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
P ++ ++ V C+S+ +++H +T+ ++++ + + + G + A +
Sbjct: 227 PDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTV 286
Query: 96 IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
++ WN+ ++ GY Q G+ ++ +LF+K+
Sbjct: 287 FSNMSVKDVVSWNA-----MVAGYSQ------------------IGRFEDAVRLFEKMQE 323
Query: 156 R----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
DV++W+ IS Y G+ E LG+ +M + G+ P+EVT++S++S + L
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383
Query: 212 GKNLHLF-------LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
GK +H + L ++ ++N L+DMY KC K+ A+ + E DVV W
Sbjct: 384 GKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTW 443
Query: 265 TTLVSGYVKSNERDEARRLFDEMVERNLISW--TLMISGMLNQDAEFKYKSCASIGALYH 322
T ++ GY + + ++A L EM E + + IS L +CAS+ AL
Sbjct: 444 TVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL--------VACASLAALRI 495
Query: 323 GIWVHVYIKKNQ----------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
G +H Y +NQ +I A +F + KN WTS++ Y
Sbjct: 496 GKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYG 555
Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
M G+ ++A+ +F EM G K D VT + +L ACSH G++D+G ++ ++ V+ + P
Sbjct: 556 MHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGP 615
Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
+HY C+VDLLGRAG L + I MP+ P +W + L CR H V+L E+A + +TE
Sbjct: 616 EHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITE 675
Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546
+DG++ LL+N+YA AGR D++RIR +R G+KK+ G S +E F GD
Sbjct: 676 LASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDK 735
Query: 547 FNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAVAFGLIST 590
+PH++EIY +L + ++ G + ET +H E+LA+A+G+++T
Sbjct: 736 THPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTT 795
Query: 591 SEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
+ IRI NLR+CGDCH+ S++ + +I++RD+ RFH F+ G CSC+ YW
Sbjct: 796 PQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/518 (23%), Positives = 221/518 (42%), Gaps = 107/518 (20%)
Query: 51 CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI--WN 108
C +I + + IH L++ ++ +++ + + G L +A ++R+ + + WN
Sbjct: 38 CKTISQVKLIHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWN 96
Query: 109 SIIENQLINGYPQEVFAIY------------------------------------LYLVT 132
S+I + NG + ++ L LVT
Sbjct: 97 SLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVT 156
Query: 133 RTV-----------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181
+ + ++C L + ++FD++ DV+SWN++I Y +G + L +
Sbjct: 157 GFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMF 216
Query: 182 SKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
S+M E G PD +T+V+++ L +GK LH F S M + + N LVDMY K
Sbjct: 217 SRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAK 276
Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWT 296
CG + EA + + DVV W +V+GY + ++A RLF++M E ++++W+
Sbjct: 277 CGMMDEANTVFSNMSVK--DVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS 334
Query: 297 LMISGMLNQDAEFK-----------------------YKSCASIGALYHGIWVHVY---- 329
ISG + ++ CAS+GAL HG +H Y
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKY 394
Query: 330 ---IKKNQISIDN---------------IELAYDLFSEIS--EKNVYLWTSVIAAYAMAG 369
++KN +N ++ A +F +S E++V WT +I Y+ G
Sbjct: 395 PIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454
Query: 370 HAQKAIDLFLEM--EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
A KA++L EM E+ T+P+ T L AC+ + G + R +
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLF 514
Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL 465
C++D+ + G + ++ +M +V+ W+SL+
Sbjct: 515 VSNCLIDMYAKCGSISDARLVFDNMMAKNEVT-WTSLM 551
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/552 (34%), Positives = 303/552 (54%), Gaps = 57/552 (10%)
Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
+F ++ N ++ +N +I C+++ + G ++M + PD +T LI A +++
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
+ +G+ H + + + N LV MY CG I A ++ G+ DVV WT++V
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR--DVVSWTSMV 190
Query: 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA--------EFKYK-------- 312
+GY K + AR +FDEM RNL +W++MI+G + EF +
Sbjct: 191 AGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANET 250
Query: 313 -------SCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEI 350
SCA +GAL G + Y+ K+ ++++ +IE A +F +
Sbjct: 251 VMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGL 310
Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGY 410
E + W+S+I A+ GHA KA+ F +M G P VTF A+LSACSHGGLV++G
Sbjct: 311 PETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGL 370
Query: 411 DFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC 470
+ + + I+P+++HYGC+VD+LGRAG L E+ NFI M + P+ I +LL AC+
Sbjct: 371 EIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKI 430
Query: 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530
++N ++AE L + P + G +VLL+NIYA AG+ D + +R +++ +KK G+S
Sbjct: 431 YKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWS 490
Query: 531 LIEQGGFVHKFTSG-DIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETS 574
LIE G ++KFT G D +P +I EI ++ G +E+S
Sbjct: 491 LIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESS 550
Query: 575 LQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
+ H E+LA+A+G++ T TTIRIV NLR+C DCH+ K+ S+VY RE+++RD RFH
Sbjct: 551 IHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHH 610
Query: 634 FQGGQCSCRDYW 645
F+ G CSCRDYW
Sbjct: 611 FRNGVCSCRDYW 622
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 7/163 (4%)
Query: 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
AY +FS+I N++++ +I ++ KA + +M ++ PD +TF L+ A S
Sbjct: 70 AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129
Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
V G S+ R + + + +V + G + + M DV W+
Sbjct: 130 MECVLVGEQTHSQIVR-FGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGF-RDVVSWT 187
Query: 463 SLLRA-CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504
S++ C+C + E+A + E N ++ N YAK
Sbjct: 188 SMVAGYCKC----GMVENAREMFDEMPHRNLFTWSIMINGYAK 226
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 342 bits (876), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 193/551 (35%), Positives = 298/551 (54%), Gaps = 49/551 (8%)
Query: 132 TRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188
R +L++ KCG + +F+ + +D +SWN++IS Y G E + L M
Sbjct: 344 VRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIME 403
Query: 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248
D +T + LIS T+L DL+ GK LH +S + I S+ N L+DMY KCG++G++
Sbjct: 404 EQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSL 463
Query: 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMISGMLNQD 306
K+ + D V W T++S V+ + ++ +M + ++ T +++
Sbjct: 464 KIFS--SMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVT------ 515
Query: 307 AEFKYKSCASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEIS 351
CAS+ A G +H + + +++ I N +E + +F +S
Sbjct: 516 ----LPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMS 571
Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
++V WT +I AY M G +KA++ F +ME++G PD V FIA++ ACSH GLVDEG
Sbjct: 572 RRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLA 631
Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
K Y I P ++HY C+VDLL R+ + ++ FI +MPI PD SIW+S+LRACR
Sbjct: 632 CFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTS 691
Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
+++ AE + + E +P + G +L +N YA + D +S IR L+D + K GYS
Sbjct: 692 GDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSW 751
Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----QETSLQ----------- 576
IE G VH F+SGD P SE IY L + + ++G +E S
Sbjct: 752 IEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLI 811
Query: 577 --HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
H ERLA+AFGL++T T ++++ NLR+CGDCH K+ S++ REI++RD RFH F
Sbjct: 812 CGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLF 871
Query: 635 QGGQCSCRDYW 645
+ G CSC+D W
Sbjct: 872 KDGTCSCKDRW 882
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 184/393 (46%), Gaps = 44/393 (11%)
Query: 87 GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
GDL Y +QI+ G E ++ + N++++ + ++ G L
Sbjct: 125 GDLVY-EQILDMGFESDLFVGNALVD-----------------------MYSRMGLLTRA 160
Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
Q+FD++P RD++SWN++IS Y+S G Y E L + ++ + PD T+ S++ A L
Sbjct: 161 RQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNL 220
Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
++ G+ LH F +S + + N LV MY K + +A+++ E+D D V + T
Sbjct: 221 LVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFD--EMDVRDSVSYNT 278
Query: 267 LVSGYVKSNERDEARRLFDEMVERN-----LISWTLMISGMLNQDAEFKY------KSCA 315
++ GY+K +E+ R+F E +++ +S L G L + KY K+
Sbjct: 279 MICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF 338
Query: 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
+ + I + VY K ++ A D+F+ + K+ W S+I+ Y +G +A+
Sbjct: 339 VLESTVRNILIDVYAK-----CGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAM 393
Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
LF M + D +T++ L+S + + G S + I + ++D+
Sbjct: 394 KLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLSVSNALIDM 452
Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
+ G + +S +SM D W++++ AC
Sbjct: 453 YAKCGEVGDSLKIFSSMGT-GDTVTWNTVISAC 484
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/527 (21%), Positives = 221/527 (41%), Gaps = 65/527 (12%)
Query: 35 ANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
+ V P V ++C+ + + E ++ ++ D + + + G L
Sbjct: 100 SKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTR 159
Query: 92 AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCGK 142
A+Q+ + ++ WNS+I +GY +E IY L T + +L G
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGN 219
Query: 143 LKEVCQ--------------------------------------LFDKLPNRDVISWNTM 164
L V Q +FD++ RD +S+NTM
Sbjct: 220 LLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTM 279
Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
I Y + M E + + + + PD +T+ S++ A LRDL + K ++ ++ ++
Sbjct: 280 ICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF 338
Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLF 284
+ ++ N L+D+Y KCG + A+ + E D V W +++SGY++S + EA +LF
Sbjct: 339 VLESTVRNILIDVYAKCGDMITARDVFNSMECK--DTVSWNSIISGYIQSGDLMEAMKLF 396
Query: 285 DEMV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI--- 337
M+ + + I++ ++IS + + A+ K+ + GI + + + I +
Sbjct: 397 KMMMIMEEQADHITYLMLIS-VSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAK 455
Query: 338 -DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396
+ + +FS + + W +VI+A G + + +M ++ PD TF+
Sbjct: 456 CGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVT 515
Query: 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP 456
L C+ G + R + + ++Q ++++ + G LE S+ M
Sbjct: 516 LPMCASLAAKRLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLENSSRVFERMS-RR 573
Query: 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
DV W+ ++ A + + A F + ++ + D V +A IYA
Sbjct: 574 DVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSV-VFIAIIYA 619
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 169/378 (44%), Gaps = 40/378 (10%)
Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
P ++V WN++I ++ G++ E L K+ VSPD+ T S+I A L D EMG
Sbjct: 67 PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126
Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
++ + + + + N LVDMY + G + A+++ E+ D+V W +L+SGY
Sbjct: 127 LVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFD--EMPVRDLVSWNSLISGYSS 184
Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAE------------FKYKSCASIGALY 321
+EA ++ E+ ++ + +S +L F KS + +
Sbjct: 185 HGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVV 244
Query: 322 HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
+ V +Y+K + + A +F E+ ++ + ++I Y ++++ +FLE
Sbjct: 245 NNGLVAMYLKFRRPTD-----ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN 299
Query: 382 EETGTKPDQVTFIALLSACSH---GGLVDEGYDFLSK-----KSRVYNIKPKMQHYGCMV 433
+ KPD +T ++L AC H L Y+++ K +S V NI ++
Sbjct: 300 LDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNI---------LI 349
Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
D+ + G + + + SM VS W+S++ ++ A FK + + D
Sbjct: 350 DVYAKCGDMITARDVFNSMECKDTVS-WNSIISGYIQSGDLMEAMKLFKMMMIMEEQAD- 407
Query: 494 AHVLLANIYAKAGRLDDM 511
H+ + + + RL D+
Sbjct: 408 -HITYLMLISVSTRLADL 424
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 342 bits (876), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 186/537 (34%), Positives = 294/537 (54%), Gaps = 40/537 (7%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
KCG L+ QLFD + R+V+SWN+MI Y +E + + KM EGV P +V+++
Sbjct: 283 KCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMG 342
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
+ A L DLE G+ +H E + + S++N L+ MY KC ++ A + G+ +
Sbjct: 343 ALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK--LQS 400
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
+V W ++ G+ ++ +A F +M R + T ++ AE +
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE--------LS 452
Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
+H W+H + ++ + + I +A +F +SE++V W ++I
Sbjct: 453 ITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMID 512
Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
Y G + A++LF EM++ KP+ VTF++++SACSH GLV+ G Y+I+
Sbjct: 513 GYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIE 572
Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
M HYG MVDLLGRAG L E+ +FI MP+ P V+++ ++L AC+ H+NV AE A +
Sbjct: 573 LSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAER 632
Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
L E +P + G HVLLANIY A + + ++R+ + GL+K G S++E VH F S
Sbjct: 633 LFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFS 692
Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL--------------QHRERLAVAFGLI 588
G +P S++IY L ++ +++ G + +T+L H E+LA++FGL+
Sbjct: 693 GSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLL 752
Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
+T+ TTI + NLR+C DCH+ K S V REIV+RD RFH F+ G CSC DYW
Sbjct: 753 NTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 163/316 (51%), Gaps = 29/316 (9%)
Query: 99 GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV 158
GDE E+++ I + +G+ ++FA + + KC ++ E ++FD++P RD+
Sbjct: 146 GDEAELRVGKEIHGLLVKSGFSLDLFA----MTGLENMYAKCRQVNEARKVFDRMPERDL 201
Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
+SWNT+++ Y+ GM R L ++ M E + P +T+VS++ A + LR + +GK +H +
Sbjct: 202 VSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGY 261
Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278
S ++ LVDMY KCG + A++L + E +VV W +++ YV++
Sbjct: 262 AMRSGFDSLVNISTALVDMYAKCGSLETARQLFD--GMLERNVVSWNSMIDAYVQNENPK 319
Query: 279 EARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH----------- 327
EA +F +M++ + + + G L+ +CA +G L G ++H
Sbjct: 320 EAMLIFQKMLDEGVKPTDVSVMGALH--------ACADLGDLERGRFIHKLSVELGLDRN 371
Query: 328 VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383
V + + IS+ ++ A +F ++ + + W ++I +A G A++ F +M
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 431
Query: 384 TGTKPDQVTFIALLSA 399
KPD T++++++A
Sbjct: 432 RTVKPDTFTYVSVITA 447
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 136/303 (44%), Gaps = 19/303 (6%)
Query: 117 NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYRE 176
NG QE F + L + G + E ++F+ + ++ + ++TM+ + + +
Sbjct: 63 NGLYQEHF----FQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDK 118
Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
L +M + V P L+ +L +GK +H L +S + + L +
Sbjct: 119 ALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178
Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
MY KC ++ EA+K+ R + E D+V W T+V+GY ++ A + M E NL
Sbjct: 179 MYAKCRQVNEARKVFDR--MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSF 236
Query: 297 LMISGMLNQDAEFKYKSCASIGALYHG----------IWVHVYIKKNQISIDNIELAYDL 346
+ I +L + + S+G HG + + + ++E A L
Sbjct: 237 ITIVSVLPAVSALRL---ISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293
Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
F + E+NV W S+I AY + ++A+ +F +M + G KP V+ + L AC+ G +
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL 353
Query: 407 DEG 409
+ G
Sbjct: 354 ERG 356
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 338 bits (868), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 177/526 (33%), Positives = 298/526 (56%), Gaps = 21/526 (3%)
Query: 139 KCGKLKEVCQLFDKLPNRDVIS--WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM 196
KCG + + ++F++ P +S +N +IS YT+ + + +M GVS D VTM
Sbjct: 100 KCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTM 159
Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
+ L+ T L +G++LH + + ++LN + MY KCG + ++L E+
Sbjct: 160 LGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFD--EM 217
Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA- 315
++ W ++SGY ++ + L+++M + + +L+ A K
Sbjct: 218 PVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGH 277
Query: 316 SIGALY--HGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
+G L +G +V++ IS+ N+ A +F + K++ WT++I Y M G
Sbjct: 278 EVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHG 337
Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
+ + LF +M + G +PD F+ +LSACSH GL D+G + R Y ++P +HY
Sbjct: 338 MGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHY 397
Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
C+VDLLGRAG L+E+ FI SMP+ PD ++W +LL AC+ H+NV +AE AF + E +P
Sbjct: 398 SCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEP 457
Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
N G +VL++NIY+ + + + RIR+ +R+ +K+ GYS +E G VH F +GD +
Sbjct: 458 NNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHE 517
Query: 550 HSEEIYLMLNEIEMTLQQ----------QGLQETSLQHRERLAVAFGLISTSEKTTIRIV 599
+EE++ ML+E+E ++ + + + T+ +H ERLA+AFG++++ T I ++
Sbjct: 518 QTEEVHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVI 577
Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
NLR+C DCH F+K S++ +R+ V+RD RFH F+ G CSC+DYW
Sbjct: 578 KNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 150/344 (43%), Gaps = 15/344 (4%)
Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
WN + ++ E + L M G SPD + ++ + L G+ LH +
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEA 280
+ + +L L+ MY KCG + +A+K+ V + L+SGY +++ +A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 281 RRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV------HVYIKKNQ 334
+F M E + ++ + G++ +Y +G HG V V + +
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEY---LWLGRSLHGQCVKGGLDSEVAVLNSF 197
Query: 335 ISI----DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
I++ ++E LF E+ K + W +VI+ Y+ G A ++L+ +M+ +G PD
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257
Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
T +++LS+C+H G G++ + K P + + + R G+L ++
Sbjct: 258 FTLVSVLSSCAHLGAKKIGHE-VGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFD 316
Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
MP+ VS W++++ H ++ F + + DGA
Sbjct: 317 IMPVKSLVS-WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGA 359
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 338 bits (866), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/571 (33%), Positives = 315/571 (55%), Gaps = 54/571 (9%)
Query: 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTM 164
N I + NG+ +F + VL+N K L + QLFD++P R+VISW TM
Sbjct: 81 NLICRHLYFNGHRPMMFLV-------NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTM 133
Query: 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224
IS Y+ ++++ L LL M + V P+ T S++ + + D+ M LH + + +
Sbjct: 134 ISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGL 190
Query: 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRY-EIDEVDVVLWTTLVSGYVKSNERDEARRL 283
+ + + L+D++ K+GE + L + E+ D ++W +++ G+ +++ D A L
Sbjct: 191 ESDVFVRSALIDVF---AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALEL 247
Query: 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK-------NQIS 336
F M I+ ++ +L ++C + L G+ HV+I K N
Sbjct: 248 FKRMKRAGFIAEQATLTSVL--------RACTGLALLELGMQAHVHIVKYDQDLILNNAL 299
Query: 337 ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
+D ++E A +F+++ E++V W+++I+ A G++Q+A+ LF M+ +GTKP+
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359
Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
+T + +L ACSH GL+++G+ + ++Y I P +HYGCM+DLLG+AG L+++ +
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419
Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
M PD W +LL ACR +N+ LAE+A K + DP + G + LL+NIYA + + D
Sbjct: 420 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDS 479
Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE---------- 560
+ IR ++RD G+KK+ G S IE +H F GD +P E+ LN+
Sbjct: 480 VEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGY 539
Query: 561 ------IEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
+ L+ + ++++ H E+LA+AFGL++ + IRI NLRICGDCH F K+
Sbjct: 540 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599
Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
S++ R IVIRD R+H FQ G+CSC DYW
Sbjct: 600 ASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 117/290 (40%), Gaps = 65/290 (22%)
Query: 36 NVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
NV P V RSC+ + + +H +I L D + + + + G+ A +
Sbjct: 157 NVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSV 216
Query: 96 IRQGDEPEIKIWNSIIENQLINGYPQ--------EVFA---------------------- 125
+ + +WNSI I G+ Q E+F
Sbjct: 217 FDEMVTGDAIVWNSI-----IGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACT 271
Query: 126 ------------IYLYLVTRTVLLN--------KCGKLKEVCQLFDKLPNRDVISWNTMI 165
+++ + ++LN KCG L++ ++F+++ RDVI+W+TMI
Sbjct: 272 GLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331
Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
S G +E L L +M + G P+ +T+V ++ A + LE G + S K
Sbjct: 332 SGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG----WYYFRSMKK 387
Query: 226 ISG-----SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
+ G ++D+ K GK+ +A KLL E E D V W TL+
Sbjct: 388 LYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC-EPDAVTWRTLLGA 436
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 196/541 (36%), Positives = 285/541 (52%), Gaps = 44/541 (8%)
Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
L +KCGK+K LF + D++++N MI YTS G L L ++ G T
Sbjct: 265 LYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSST 324
Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
+VSL+ L + +H + +S S+ L +Y K +I A+KL E
Sbjct: 325 LVSLVPVSGHLM---LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFD--E 379
Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
E + W ++SGY ++ ++A LF EM + + I+ +L+ +CA
Sbjct: 380 SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILS--------ACA 431
Query: 316 SIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISEKNVYLWTS 360
+GAL G WVH +Y+ I + +I A LF +++KN W +
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491
Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
+I+ Y + G Q+A+++F EM +G P VTF+ +L ACSH GLV EG + + Y
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551
Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
+P ++HY CMVD+LGRAGHL+ + FI +M I P S+W +LL ACR H++ LA
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611
Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
+ L E DP N G HVLL+NI++ + +R + L K GY+LIE G H
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671
Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSLQ---------------HRERLAVA 584
FTSGD +P +EIY L ++E +++ G Q ET L H ERLA+A
Sbjct: 672 FTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731
Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
FGLI+T T IRI+ NLR+C DCH+ K+ S++ R IV+RD RFH F+ G CSC DY
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791
Query: 645 W 645
W
Sbjct: 792 W 792
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/491 (21%), Positives = 204/491 (41%), Gaps = 87/491 (17%)
Query: 49 RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
+ +SI + H+ +I D + T++ + L G + YA+ I P++ ++N
Sbjct: 28 KRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFN 87
Query: 109 SIIENQLINGYPQEVFAIYLYLVTRT-------------------------------VLL 137
++ +N P +++ +L T ++
Sbjct: 88 VLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVV 147
Query: 138 NKCG-----------------KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
+ C ++++ ++FD++P +D I WNTMIS Y MY E + +
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207
Query: 181 LSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
+ E + D T++ ++ A +L++L +G +H ++ +L + +Y
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYS 267
Query: 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299
KCGKI L E + D+V + ++ GY + E + + LF E LM+
Sbjct: 268 KCGKIKMGSALF--REFRKPDIVAYNAMIHGYTSNGETELSLSLFKE----------LML 315
Query: 300 SGMLNQDAEFKYKSCASI----GALYHGIWVHVY-IKKNQIS--------------IDNI 340
SG A + + S+ G L +H Y +K N +S ++ I
Sbjct: 316 SG-----ARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEI 370
Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
E A LF E EK++ W ++I+ Y G + AI LF EM+++ P+ VT +LSAC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430
Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
+ G + G ++ R + + + ++ + + G + E+ M +V+
Sbjct: 431 AQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT- 488
Query: 461 WSSLLRACRCH 471
W++++ H
Sbjct: 489 WNTMISGYGLH 499
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 187/546 (34%), Positives = 292/546 (53%), Gaps = 58/546 (10%)
Query: 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKN 214
N ++++N MIS Y + G Y+E L ++ +M + G+ DE T S+I A L++GK
Sbjct: 248 NMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQ 307
Query: 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS 274
+H ++ S N LV +Y+KCGK EA+ + + + D+V W L+SGYV S
Sbjct: 308 VHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEK--MPAKDLVSWNALLSGYVSS 364
Query: 275 NERDEARRLFDEMVERNLISWTLMISGMLNQ---------------------DAEFK--Y 311
EA+ +F EM E+N++SW +MISG+ D F
Sbjct: 365 GHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAI 424
Query: 312 KSCASIGALYHGIWVHVYIKK----NQISIDN-----------IELAYDLFSEISEKNVY 356
KSCA +GA +G H + K + +S N +E A +F + +
Sbjct: 425 KSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSV 484
Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
W ++IAA GH +A+D++ EM + G +PD++T + +L+ACSH GLVD+G +
Sbjct: 485 SWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSM 544
Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
VY I P HY ++DLL R+G ++ + I S+P P IW +LL CR H N++L
Sbjct: 545 ETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMEL 604
Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
A L P +DG ++LL+N++A G+ ++++R+R +RD G+KK++ S IE
Sbjct: 605 GIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMET 664
Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL----------------QHRE 579
VH F D +P +E +Y+ L ++ +++ G + +TS H E
Sbjct: 665 QVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSE 724
Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
++AVAFGL+ TTIRI NLR CGDCH+F + S V R+I++RD RFH F+ G+C
Sbjct: 725 KIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGEC 784
Query: 640 SCRDYW 645
SC ++W
Sbjct: 785 SCGNFW 790
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 116/522 (22%), Positives = 204/522 (39%), Gaps = 104/522 (19%)
Query: 26 PKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVF 85
P + R AN +L + + R +S+ +H ++IT I ++ +
Sbjct: 3 PNPDLVRAIANRYAANLRLCLPLRR-TSLQLARAVHGNIITFGFQPRAHILNRLIDVYCK 61
Query: 86 TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145
+ +L YA+Q+ + EP+ I +++GY G +
Sbjct: 62 SSELNYARQLFDEISEPD-----KIARTTMVSGYCAS------------------GDITL 98
Query: 146 VCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
+F+K P RD + +N MI+ ++ + L KM EG PD T S+++
Sbjct: 99 ARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGL 158
Query: 204 TKLRDLE-MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK----IGEAQKLLGRYEIDE 258
+ D E H +S S+ N LV +Y KC + A+K+ EI E
Sbjct: 159 ALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFD--EILE 216
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLN----QDA------ 307
D WTT+++GYVK+ D L + M + L+++ MISG +N Q+A
Sbjct: 217 KDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRR 276
Query: 308 ---------EFKY----KSCASIGALYHGIWVHVYIKKNQ-------------------- 334
EF Y ++CA+ G L G VH Y+ + +
Sbjct: 277 MVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKF 336
Query: 335 -------------------------ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
+S +I A +F E+ EKN+ W +I+ A G
Sbjct: 337 DEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENG 396
Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
++ + LF M+ G +P F + +C+ G G + ++ ++ +
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKI-GFDSSLSAG 455
Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
++ + + G +EE+ +MP VS W++L+ A H
Sbjct: 456 NALITMYAKCGVVEEARQVFRTMPCLDSVS-WNALIAALGQH 496
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
KCG ++E Q+F +P D +SWN +I+ G E + + +M +G+ PD +T+++
Sbjct: 464 KCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLT 523
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEI 256
+++A + ++ G+ + E+ +I +Y L+D+ + GK +A+ ++
Sbjct: 524 VLTACSHAGLVDQGRK-YFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPF 582
Query: 257 DEVDVVLWTTLVSG 270
+W L+SG
Sbjct: 583 KPT-AEIWEALLSG 595
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 336 bits (861), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 198/528 (37%), Positives = 283/528 (53%), Gaps = 71/528 (13%)
Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH----LFLEESTMKISGSLLNYLVDMY 238
+M VSPD T L+ + L +G+ H LF + + SLLN MY
Sbjct: 52 RMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLN----MY 107
Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
CG + AQ++ + D+ W ++V+ Y K+ D+AR+LFDEM ERN+ISW+ +
Sbjct: 108 SSCGDLRSAQRVFD--DSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCL 165
Query: 299 ISGMLN------------------------QDAEFKYKS----CASIGALYHGIWVHVYI 330
I+G + + EF + C +GAL G WVH YI
Sbjct: 166 INGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYI 225
Query: 331 KKNQISID---------------NIELAYDLFSEI-SEKNVYLWTSVIAAYAMAGHAQKA 374
K + ID ++E A +F+ + S+K+V ++++I AM G +
Sbjct: 226 DKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDEC 285
Query: 375 IDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
LF EM + P+ VTF+ +L AC H GL++EG + + I P +QHYGCMV
Sbjct: 286 FQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMV 345
Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
DL GR+G ++E+ +FI SMP+ PDV IW SLL R ++K E A K L E DP+N G
Sbjct: 346 DLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSG 405
Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
A+VLL+N+YAK GR ++ IR ++ G+ K G S +E G VH+F GD SE
Sbjct: 406 AYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESER 465
Query: 554 IYLMLNEIEMTLQQQGL---------------QETSLQ-HRERLAVAFGLISTSEKTTIR 597
IY ML+EI L++ G +E +L H E+LA+AF L+ T T +R
Sbjct: 466 IYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVR 525
Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
I+ NLRICGDCH MK+ S++++REIV+RD RFH F+ G CSCRD+W
Sbjct: 526 IIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 149/331 (45%), Gaps = 47/331 (14%)
Query: 58 ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
+R H+ ++ L +DP + T + GDL AQ++ ++ WNS++ N
Sbjct: 82 QRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVV-----N 136
Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
Y K G + + +LFD++P R+VISW+ +I+ Y G Y+E
Sbjct: 137 AYA------------------KAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEA 178
Query: 178 LGL-----LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
L L L K V P+E TM +++SA +L LE GK +H ++++ ++I L
Sbjct: 179 LDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGT 238
Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM----- 287
L+DMY KCG + A+++ + DV ++ ++ DE +LF EM
Sbjct: 239 ALIDMYAKCGSLERAKRVFNALG-SKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDN 297
Query: 288 VERNLISWTLMIS-----GMLNQDAEFKYKSCASIGAL----YHGIWVHVYIKKNQISID 338
+ N +++ ++ G++N+ + G ++G V +Y + I
Sbjct: 298 INPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIK-- 355
Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
E + S E +V +W S+++ M G
Sbjct: 356 --EAESFIASMPMEPDVLIWGSLLSGSRMLG 384
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 332 bits (852), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 198/562 (35%), Positives = 309/562 (54%), Gaps = 64/562 (11%)
Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
GK++ LF + + D+ + I+ + G+ + L ++ + ++P+E T SL+
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137
Query: 201 -SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
S TK GK +H + + + I + LVD+Y K G + AQK+ R + E
Sbjct: 138 KSCSTK-----SGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR--MPER 190
Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG-----------MLNQD-- 306
+V T +++ Y K + AR LFD M ER+++SW +MI G ML Q
Sbjct: 191 SLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLL 250
Query: 307 AEFKYK-----------SCASIGALYHGIWVHVYIKKNQISID---------------NI 340
AE K K +C+ IGAL G W+HV++K ++I ++ ++
Sbjct: 251 AEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSL 310
Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE-TGTKPDQVTFIALLSA 399
E A +F++ K++ W ++IA YAM G++Q A+ LF EM+ TG +P +TFI L A
Sbjct: 311 EEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQA 370
Query: 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459
C+H GLV+EG + Y IKPK++HYGC+V LLGRAG L+ + I +M + D
Sbjct: 371 CAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSV 430
Query: 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519
+WSS+L +C+ H + L + ++L + N G +VLL+NIYA G + ++++R ++
Sbjct: 431 LWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMK 490
Query: 520 DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG---------- 569
+ G+ K+ G S IE VH+F +GD + S+EIY ML +I ++ G
Sbjct: 491 EKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQ 550
Query: 570 -LQET----SLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREI 623
L+ET SLQ H ERLA+A+GLIST + ++I NLR+C DCH+ K+ S++ R+I
Sbjct: 551 DLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKI 610
Query: 624 VIRDNGRFHRFQGGQCSCRDYW 645
V+RD RFH F G CSC D+W
Sbjct: 611 VMRDRNRFHHFTDGSCSCGDFW 632
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 140/281 (49%), Gaps = 38/281 (13%)
Query: 49 RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
+SCS+ + IH+H++ L DP ++T + + GD+ AQ++ + PE + +
Sbjct: 138 KSCST-KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR--MPERSLVS 194
Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCY 168
S +I Y ++ G ++ LFD + RD++SWN MI Y
Sbjct: 195 S---TAMITCYAKQ------------------GNVEAARALFDSMCERDIVSWNVMIDGY 233
Query: 169 TSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227
G + L L K+ AEG PDE+T+V+ +SA +++ LE G+ +H+F++ S ++++
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLN 293
Query: 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287
+ L+DMY KCG + EA +L + D+V W +++GY +A RLF+EM
Sbjct: 294 VKVCTGLIDMYSKCGSLEEA--VLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEM 351
Query: 288 VERNLISWTLMISGMLNQDAEF--KYKSCASIGALYHGIWV 326
I+G+ D F ++CA G + GI +
Sbjct: 352 QG---------ITGLQPTDITFIGTLQACAHAGLVNEGIRI 383
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 330 bits (847), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 191/546 (34%), Positives = 296/546 (54%), Gaps = 44/546 (8%)
Query: 134 TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
VL+N KCG ++ Q+FD + R ++SWNTMI YT M E L + +M EG
Sbjct: 100 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159
Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
E T+ S++SA D K LH ++ + ++ + L+D+Y KCG I +A ++
Sbjct: 160 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQV 219
Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
+ + V W+++V+GYV++ +EA L+ +L +S ++
Sbjct: 220 FE--SMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVIC------ 271
Query: 311 YKSCASIGALYHGIWVHVYIKKNQI---------SID------NIELAYDLFSEISEKNV 355
+C+++ AL G +H I K+ ++D ++ +Y +FSE+ EKN+
Sbjct: 272 --ACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNL 329
Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
LW ++I+ +A ++ + LF +M++ G P++VTF +LLS C H GLV+EG F
Sbjct: 330 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 389
Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
Y + P + HY CMVD+LGRAG L E+ I S+P P SIW SLL +CR ++N++
Sbjct: 390 MRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLE 449
Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
LAE A + L E +P N G HVLL+NIYA + +++++ R LRD +KK G S I+
Sbjct: 450 LAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIK 509
Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRE 579
VH F+ G+ +P EI L+ + + ++ G +E +QH E
Sbjct: 510 DKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSE 569
Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQC 639
+LA+ FGL+ E + +RI+ NLRIC DCH FMK S R I++RD RFH F G C
Sbjct: 570 KLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHC 629
Query: 640 SCRDYW 645
SC D+W
Sbjct: 630 SCGDFW 635
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 134/327 (40%), Gaps = 50/327 (15%)
Query: 25 VPKMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV 84
V R S +F+N V + + R+ ++ E + H +I +L D + +
Sbjct: 49 VSPGRYSNEFSNRNLVHEILQLCARN-GAVMEAKACHGKIIRIDLEGDVTLLNVLINAYS 107
Query: 85 FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIY----------------- 127
G + A+Q+ E + WN++I N E I+
Sbjct: 108 KCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISS 167
Query: 128 ---------------------------LYLVTRTVLLN---KCGKLKEVCQLFDKLPNRD 157
L L T LL+ KCG +K+ Q+F+ + ++
Sbjct: 168 VLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKS 227
Query: 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217
++W++M++ Y Y E L L + + ++ T+ S+I A + L L GK +H
Sbjct: 228 SVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHA 287
Query: 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNER 277
+ +S + + + VDMY KCG + E+ + E+ E ++ LW T++SG+ K
Sbjct: 288 VICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFS--EVQEKNLELWNTIISGFAKHARP 345
Query: 278 DEARRLFDEMVERNLISWTLMISGMLN 304
E LF++M + + + S +L+
Sbjct: 346 KEVMILFEKMQQDGMHPNEVTFSSLLS 372
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 130/310 (41%), Gaps = 53/310 (17%)
Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRY-EID-EVDVVLWTTLVSGYVKSNERDEARRLFDE 286
+L++ ++ + + G + EA+ G+ ID E DV L L++ Y K + AR++FD
Sbjct: 62 NLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDG 121
Query: 287 MVERNLISWTLMIS----------------GMLNQDAEFKYKSCASI--------GAL-- 320
M+ER+L+SW MI M N+ +F + +S+ AL
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC 181
Query: 321 --YHGIWVHVYIKKN----------QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
H + V I N I+ A +F + +K+ W+S++A Y
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 241
Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG---YDFLSKKSRVYNIKPK 425
+ ++A+ L+ + + +Q T +++ ACS+ + EG + + K N+
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVA 301
Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485
VD+ + G L ES I S ++ +W++++ H K F+ +
Sbjct: 302 SS----AVDMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQ 356
Query: 486 ETDPLNDGAH 495
+ DG H
Sbjct: 357 Q-----DGMH 361
Score = 32.7 bits (73), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 82/189 (43%), Gaps = 24/189 (12%)
Query: 44 VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE 103
VI + +++ E +++H+ + + + +++ + G L + I + E
Sbjct: 269 VICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKN 328
Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKCGK--LKEVCQLFDK 152
+++WN+II + P+EV ++ + VT + LL+ CG L E + F K
Sbjct: 329 LELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFK 388
Query: 153 L--------PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISART 204
L PN V+ ++ M+ G+ E L+ + + P SL+++
Sbjct: 389 LMRTTYGLSPN--VVHYSCMVDILGRAGLLSEAYELIKSIPFD---PTASIWGSLLASCR 443
Query: 205 KLRDLEMGK 213
++LE+ +
Sbjct: 444 VYKNLELAE 452
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 330 bits (845), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 188/531 (35%), Positives = 284/531 (53%), Gaps = 43/531 (8%)
Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
Q+FD++ + WNT+ Y + E L L KM GV PDE T ++ A ++L
Sbjct: 64 QVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLG 123
Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
D G LH + + G + LV MY K G++ A+ L ++ D+V W
Sbjct: 124 DFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVK--DLVAWNAF 181
Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
++ V++ A F++M + + + ML+ +C +G+L G ++
Sbjct: 182 LAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS--------ACGQLGSLEIGEEIY 233
Query: 328 VYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQ 372
+K +I + N E A LF E+ ++NV W+++I YAM G ++
Sbjct: 234 DRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSR 293
Query: 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS--KKSRVYNIKPKMQHYG 430
+A+ LF M+ G +P+ VTF+ +LSACSH GLV+EG + S +S N++P+ +HY
Sbjct: 294 EALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYA 353
Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490
CMVDLLGR+G LEE+ FI MP+ PD IW +LL AC H+++ L + L ET P
Sbjct: 354 CMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPD 413
Query: 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPH 550
HVLL+NIYA AG+ D + ++R K+R +G KK YS +E G +H F GD +P
Sbjct: 414 IGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQ 473
Query: 551 SEEIYLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKT 594
S+ IY L+EI +++ G +E SL H E+LA+AFGLI
Sbjct: 474 SKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGH 533
Query: 595 TIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
IR++ NLR C DCH+F K S + + EI++RD RFH F+ G CSC+++W
Sbjct: 534 PIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 95/422 (22%), Positives = 182/422 (43%), Gaps = 84/422 (19%)
Query: 46 MVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
++ S S + ++IH+ ++ T + TQ+ E LV GD+ YA+Q+ + +P I
Sbjct: 16 LLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIF 75
Query: 106 IWNSIIENQLINGYPQEV-----------------------------------FAIYLYL 130
+WN++ + + N P E FA++ ++
Sbjct: 76 LWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHV 135
Query: 131 V-----------TRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
V T V++ K G+L LF+ + +D+++WN ++ G L
Sbjct: 136 VKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIAL 195
Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
+KM A+ V D T+VS++SA +L LE+G+ ++ + + + + N +DM+
Sbjct: 196 EYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMH 255
Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
KCG A+ L E+ + +VV W+T++ GY + + EA LF M L +
Sbjct: 256 LKCGNTEAARVLFE--EMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVT 313
Query: 299 ISGMLNQDAEFKYKSCASIGALYHGI-WVHVYIKKNQISIDN-----------------I 340
G+L+ +C+ G + G + + ++ N +++ +
Sbjct: 314 FLGVLS--------ACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLL 365
Query: 341 ELAYDLFSEIS-EKNVYLWTSVIAAYAMAGH---AQKAIDLFLEMEETGTKPDQVTFIAL 396
E AY+ ++ E + +W +++ A A+ QK D+ +E T PD ++ L
Sbjct: 366 EEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVE-----TAPDIGSYHVL 420
Query: 397 LS 398
LS
Sbjct: 421 LS 422
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 327 bits (837), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 184/543 (33%), Positives = 285/543 (52%), Gaps = 48/543 (8%)
Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
+K ++ E LFD++P D +S+N +IS Y+ Y L +M G
Sbjct: 296 SKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFA 355
Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQKLLGRY 254
+++S L L+MG+ LH ++ + + S+L N LVDMY KC EA+ +
Sbjct: 356 TMLSIAANLSSLQMGRQLHC---QALLATADSILHVGNSLVDMYAKCEMFEEAELIFK-- 410
Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
+ + V WT L+SGYV+ +LF +M NL + + +L K+
Sbjct: 411 SLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVL--------KAS 462
Query: 315 ASIGALYHGIWVHVYIKKN---------------QISIDNIELAYDLFSEISEKNVYLWT 359
AS +L G +H +I ++ +I+ A +F E+ ++N W
Sbjct: 463 ASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWN 522
Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
++I+A+A G + AI F +M E+G +PD V+ + +L+ACSH G V++G ++ S +
Sbjct: 523 ALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPI 582
Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
Y I PK +HY CM+DLLGR G E+ + MP PD +WSS+L ACR H+N LAE
Sbjct: 583 YGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAER 642
Query: 480 AFKHLTETDPLND-GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
A + L + L D A+V ++NIYA AG + + ++ +R+ G+KK YS +E +
Sbjct: 643 AAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKI 702
Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ----------------ETSLQHRERLA 582
H F+S D +P+ +EI +NE+ ++++G + E+ H ERLA
Sbjct: 703 HVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLA 762
Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
VAF LIST E I ++ NLR C DCH+ +K+ S++ REI +RD RFH F G CSC
Sbjct: 763 VAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCG 822
Query: 643 DYW 645
DYW
Sbjct: 823 DYW 825
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 172/384 (44%), Gaps = 24/384 (6%)
Query: 129 YLVTRTVLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
+L VLL + +L C LF+++P +D +++NT+I+ Y G+Y E + L KM
Sbjct: 183 FLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMR 242
Query: 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245
G P + T ++ A L D +G+ LH + S+ N ++D Y K ++
Sbjct: 243 QSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVL 302
Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV-----ERNLISWTLM-I 299
E + L E+ E+D V + ++S Y ++++ + + F EM RN T++ I
Sbjct: 303 ETRMLFD--EMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360
Query: 300 SGMLNQDAEFKYKSCASIGALYHGI------WVHVYIKKNQISIDNIELAYDLFSEISEK 353
+ L+ + C ++ A I V +Y K + E A +F + ++
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAK-----CEMFEEAELIFKSLPQR 415
Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
WT++I+ Y G + LF +M + + DQ TF +L A + + G
Sbjct: 416 TTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLH 475
Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
+ R N++ G +VD+ + G ++++ MP VS W++L+ A + +
Sbjct: 476 AFIIRSGNLENVFSGSG-LVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISAHADNGD 533
Query: 474 VKLAEHAFKHLTETDPLNDGAHVL 497
+ A AF + E+ D +L
Sbjct: 534 GEAAIGAFAKMIESGLQPDSVSIL 557
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 92/422 (21%), Positives = 163/422 (38%), Gaps = 46/422 (10%)
Query: 59 RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
R+ + +I T D S + E L+ G + A+++ E+ N++ N +I+G
Sbjct: 34 RVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVY-----DEMPHKNTVSTNTMISG 88
Query: 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
+ K G + LFD +P+R V++W ++ Y + E
Sbjct: 89 HV------------------KTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAF 130
Query: 179 GLLSKM--GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL--NYL 234
L +M + PD VT +L+ +H F + + L N L
Sbjct: 131 KLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVL 190
Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
+ Y + ++ A L EI E D V + TL++GY K E+ LF +M +
Sbjct: 191 LKSYCEVRRLDLACVLF--EEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQP 248
Query: 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKK-----NQI-----SIDNIELAY 344
SG+L ++G H + V + NQI D +
Sbjct: 249 SDFTFSGVLKAVVGLHD---FALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETR 305
Query: 345 DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404
LF E+ E + + VI++Y+ A + ++ F EM+ G F +LS ++
Sbjct: 306 MLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLS 365
Query: 405 LVDEGYDFLSKKSRVYNIKPKMQHYG-CMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
+ G + + + H G +VD+ + EE+ S+P VS W++
Sbjct: 366 SLQMGRQLHCQA--LLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS-WTA 422
Query: 464 LL 465
L+
Sbjct: 423 LI 424
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 326 bits (836), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 184/542 (33%), Positives = 299/542 (55%), Gaps = 47/542 (8%)
Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCY-TSMGMYREGLGLLSKMGAEG-VSPDEVTMVS 198
G + + ++FD++ + V+SW +I+ Y + + E + L S+M +G V P+ T S
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
A L D +GK + + + + S+ N ++ M+ K ++ +AQ+ + E
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF--ESLSE 436
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
++V + T + G ++ ++A +L E+ ER L + +L+ A++G
Sbjct: 437 KNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLS--------GVANVG 488
Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
++ G +H + K +S + +I+ A +F+ + +NV WTS+I
Sbjct: 489 SIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMIT 548
Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
+A G A + ++ F +M E G KP++VT++A+LSACSH GLV EG+ + + IK
Sbjct: 549 GFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIK 608
Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483
PKM+HY CMVDLL RAG L ++ FI +MP DV +W + L ACR H N +L + A +
Sbjct: 609 PKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARK 668
Query: 484 LTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTS 543
+ E DP A++ L+NIYA AG+ ++ + +R K+++ L K+ G S IE G +HKF
Sbjct: 669 ILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYV 728
Query: 544 GDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSL-------------------QHRERLAV 583
GD +P++ +IY L+ + +++ G + +T L QH E++AV
Sbjct: 729 GDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAV 788
Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
AFGLISTS+ +R+ NLR+CGDCH+ MK S V REIV+RD RFH F+ G+CSC D
Sbjct: 789 AFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCND 848
Query: 644 YW 645
YW
Sbjct: 849 YW 850
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 48/290 (16%)
Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
++FDK+ +V++W MI+ MG RE + M G D+ T+ S+ SA +L
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283
Query: 208 DLEMGKNLHLFLEESTMKISGSLLN----YLVDMYFKC---GKIGEAQKLLGRYEIDEVD 260
+L +GK LH + I L++ LVDMY KC G + + +K+ R E +
Sbjct: 284 NLSLGKQLH------SWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRME--DHS 335
Query: 261 VVLWTTLVSGYVKS-NERDEARRLFDEM-----VERNLISWTLMISGMLNQDAEFKYKSC 314
V+ WT L++GY+K+ N EA LF EM VE N +++ +K+C
Sbjct: 336 VMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS------------AFKAC 383
Query: 315 ASIG-----------ALYHGIWVHVYIKKNQISI----DNIELAYDLFSEISEKNVYLWT 359
++ A G+ + + + IS+ D +E A F +SEKN+ +
Sbjct: 384 GNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYN 443
Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
+ + + ++A L E+ E TF +LLS ++ G + +G
Sbjct: 444 TFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKG 493
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 31/255 (12%)
Query: 168 YTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226
+ + G R + L M +G+ P D VT SL+ + + RD +GK +H L E ++
Sbjct: 36 HLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEP 95
Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
L N L+ +Y K G +A+ + + DVV W+ +++ Y + +A ++F
Sbjct: 96 DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFV 155
Query: 286 EMVERNLIS----WTLMISGMLNQD---------------AEFKYKSCASIGALYHGIWV 326
E +E L+ +T +I N D F+ C +
Sbjct: 156 EFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCS------LI 209
Query: 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
+++K ++ E AY +F ++SE NV WT +I G ++AI FL+M +G
Sbjct: 210 DMFVKGE----NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGF 265
Query: 387 KPDQVTFIALLSACS 401
+ D+ T ++ SAC+
Sbjct: 266 ESDKFTLSSVFSACA 280
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 164/377 (43%), Gaps = 57/377 (15%)
Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
K ++V + + RDV+SW+ M++CY + G + + + + G+ P++ ++I
Sbjct: 114 AKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVI 173
Query: 201 SARTKLRDLEMGK-NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE-AQKLLGRYEIDE 258
A + + +G+ L ++ + + L+DM+ K E A K+ + + E
Sbjct: 174 RACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK--MSE 231
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
++VV WT +++ ++ EA R F +MV S +S + + +CA +
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV--------FSACAELE 283
Query: 319 ALYHGIWVHVYIKKNQISIDNIELAY-----------------DLFSEISEKNVYLWTSV 361
L G +H + ++ + +D++E + +F + + +V WT++
Sbjct: 284 NLSLGKQLHSWAIRSGL-VDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTAL 342
Query: 362 IAAYAMAGH-AQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDE-------GYDF 412
I Y + A +AI+LF EM G +P+ TF + AC G L D G F
Sbjct: 343 ITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC--GNLSDPRVGKQVLGQAF 400
Query: 413 ---LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
L+ S V N ++ + ++ +E++ S+ VS + L CR
Sbjct: 401 KRGLASNSSVAN---------SVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451
Query: 470 CHQNVKLAEHAFKHLTE 486
N+ E AFK L+E
Sbjct: 452 ---NLNF-EQAFKLLSE 464
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
+ +KCG + ++F+ + NR+VISW +MI+ + G L ++M EGV P+EVT
Sbjct: 518 MYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVT 577
Query: 196 MVSLISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
V+++SA + + + G ++ + E+ +K +VD+ + G + +A + +
Sbjct: 578 YVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTM 637
Query: 255 EIDEVDVVLWTTLVSG 270
+ DV++W T +
Sbjct: 638 PF-QADVLVWRTFLGA 652
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
K ++++ + F+ L ++++S+NT + + + LLS++ + T S
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFAS 479
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
L+S + + G+ +H + + + + + N L+ MY KCG I A ++ E
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFME--N 537
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMISGMLNQDAEFKYKSC 314
+V+ WT++++G+ K F++M+E N +++ ++S +C
Sbjct: 538 RNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILS------------AC 585
Query: 315 ASIGALYHGIWVH 327
+ +G + G W H
Sbjct: 586 SHVGLVSEG-WRH 597
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 326 bits (835), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 187/569 (32%), Positives = 296/569 (52%), Gaps = 66/569 (11%)
Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTM 196
KCG Q+FD++P+RD I+W ++++ + + L + S +G+ + PD+
Sbjct: 49 GKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVF 108
Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
+L+ A L ++ G+ +H S + + LVDMY KCG + A+ + +
Sbjct: 109 SALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRV 168
Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS--- 313
+ + WT +VSGY KS ++EA LF + +NL SWT +ISG + + S
Sbjct: 169 K--NTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFT 226
Query: 314 ---------------------CASIGALYHGIWVH-----------VYIKKNQISI---- 337
CA++ A G VH V+I I +
Sbjct: 227 EMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKC 286
Query: 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397
++ A D+FS + ++V WTS+I A G A+KA+ L+ +M G KP++VTF+ L+
Sbjct: 287 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 346
Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
ACSH G V++G + ++ Y I+P +QHY C++DLLGR+G L+E+ N I +MP PPD
Sbjct: 347 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD 406
Query: 458 VSIWSSLLRAC----RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
W++LL AC R +++A+H DP ++LL+NIYA A +S
Sbjct: 407 EPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDP---STYILLSNIYASASLWGKVSE 463
Query: 514 IRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI--EMTLQQQGLQ 571
R KL +M ++K G+S +E F +G+ +P E+I+ +L ++ EM ++ +
Sbjct: 464 ARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVP 523
Query: 572 ETS---------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTS 616
+TS H ER AVA+GL+ T IRIV NLR+CGDCH +K S
Sbjct: 524 DTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHIS 583
Query: 617 QVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
++ REI++RD R+H F+GG+CSC D+W
Sbjct: 584 EITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 32/191 (16%)
Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
R L K LH + + + L N LV++Y KCG A ++ E+ D + W +
Sbjct: 17 RTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFD--EMPHRDHIAWAS 74
Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY----KSCASIGALYH 322
+++ ++N + + L ++ + S + +F + K+CA++G++ H
Sbjct: 75 VLTALNQAN-----------LSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 123
Query: 323 GIWVHVYIKKNQISIDNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAM 367
G VH + ++ + D + A +F I KN WT++++ YA
Sbjct: 124 GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 183
Query: 368 AGHAQKAIDLF 378
+G ++A++LF
Sbjct: 184 SGRKEEALELF 194
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 325 bits (834), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 191/595 (32%), Positives = 304/595 (51%), Gaps = 92/595 (15%)
Query: 51 CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGD--LGYAQQIIRQGDEPEIKIWN 108
C + ++I + +I L+ DP S+++ F + L Y+ +I++ + P I WN
Sbjct: 63 CKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWN 122
Query: 109 SIIENQLINGYPQEVFAIYLYLV------------TRTVLLN------------------ 138
I + P+E F +Y ++ T VL
Sbjct: 123 VTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHV 182
Query: 139 --------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
CG ++ ++FD+ P RD++SWN +I+ Y +G + +
Sbjct: 183 LKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAI 242
Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
+ M +EGV PD+VTM+ L+S+ + L DL GK + +++E+ ++++ L+N L+DM+
Sbjct: 243 YVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMF 302
Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
KCG I EA+++ E + +V WTT++SGY + D +R+LFD+M E++++ W M
Sbjct: 303 SKCGDIHEARRIFDNLE--KRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAM 360
Query: 299 ISGML----NQDAEFKYK-------------------SCASIGALYHGIWVHVYIKKNQI 335
I G + QDA ++ +C+ +GAL GIW+H YI+K +
Sbjct: 361 IGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSL 420
Query: 336 SID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
S++ NI A +F I +N +T++I A+ G A AI F E
Sbjct: 421 SLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNE 480
Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
M + G PD++TFI LLSAC HGG++ G D+ S+ +N+ P+++HY MVDLLGRAG
Sbjct: 481 MIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAG 540
Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
LEE+ + SMP+ D ++W +LL CR H NV+L E A K L E DP + G +VLL
Sbjct: 541 LLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDG 600
Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
+Y +A +D R R + + G++K G S IE G V +F D P SE+IY
Sbjct: 601 MYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIY 655
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 123/271 (45%), Gaps = 28/271 (10%)
Query: 37 VCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
V P + +I + SCS + + R + ++ L + + + GD+ A+
Sbjct: 253 VKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEAR 312
Query: 94 QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
+I ++ I W + +I+GY +CG L +LFD +
Sbjct: 313 RIFDNLEKRTIVSWTT-----MISGYA------------------RCGLLDVSRKLFDDM 349
Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
+DV+ WN MI ++ L L +M PDE+TM+ +SA ++L L++G
Sbjct: 350 EEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409
Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
+H ++E+ ++ ++ +L LVDMY KCG I EA + + I + + +T ++ G
Sbjct: 410 WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVF--HGIQTRNSLTYTAIIGGLAL 467
Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLN 304
+ A F+EM++ + + G+L+
Sbjct: 468 HGDASTAISYFNEMIDAGIAPDEITFIGLLS 498
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 325 bits (832), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 187/542 (34%), Positives = 295/542 (54%), Gaps = 38/542 (7%)
Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG-AEGVSPDEVTMVS 198
C ++ ++FD + +R + WN MI+ Y+ +E L L M + G+ + TM
Sbjct: 351 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
++ A + + +H F+ + + + N L+DMY + GKI A ++ G+ E +
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME--D 468
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEM--VERNLISWTLMISGMLNQDAEFK-YKSCA 315
D+V W T+++GYV S ++A L +M +ER + +S N SCA
Sbjct: 469 RDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCA 528
Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
++ AL G +H Y KN ++ D ++++ +F +I +KNV W
Sbjct: 529 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNV 588
Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
+I AY M G+ Q+AIDL M G KP++VTFI++ +ACSH G+VDEG Y
Sbjct: 589 IIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDY 648
Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD-VSIWSSLLRACRCHQNVKLAEH 479
++P HY C+VDLLGRAG ++E+ + MP + WSSLL A R H N+++ E
Sbjct: 649 GVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEI 708
Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
A ++L + +P +VLLANIY+ AG D + +R +++ G++K+ G S IE G VH
Sbjct: 709 AAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768
Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETS---------------LQHRERLAV 583
KF +GD +P SE++ L + ++++G + +TS H E+LA+
Sbjct: 769 KFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAI 828
Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
AFG+++TS T IR+ NLR+C DCH K S++ +REI++RD RFHRF+ G CSC D
Sbjct: 829 AFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGD 888
Query: 644 YW 645
YW
Sbjct: 889 YW 890
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 165/377 (43%), Gaps = 54/377 (14%)
Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
T + K GKL L RD+++WNT++S E L L +M EGV P
Sbjct: 241 TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
Query: 192 DEVTMVSLISARTKLRDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
DE T+ S++ A + L L GK LH + L+ ++ + + + LVDMY C ++ L
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV-----L 355
Query: 251 LGRYEID---EVDVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLNQD 306
GR D + + LW +++GY ++ EA LF M E L++ + ++G++
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV--- 412
Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
+C GA +H ++ K + D I++A +F ++
Sbjct: 413 -----PACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME 467
Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEME-----------ETGTKPDQVTFIALLSAC 400
++++ W ++I Y + H + A+ L +M+ KP+ +T + +L +C
Sbjct: 468 DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSC 527
Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQH----YGCMVDLLGRAGHLEESANFITSMPIPP 456
+ + +G K+ Y IK + +VD+ + G L+ S +P
Sbjct: 528 AALSALAKG-----KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QK 581
Query: 457 DVSIWSSLLRACRCHQN 473
+V W+ ++ A H N
Sbjct: 582 NVITWNVIIMAYGMHGN 598
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 119/453 (26%), Positives = 188/453 (41%), Gaps = 97/453 (21%)
Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
L KCG V ++FD++ R+ +SWN++IS S + L M E V P T
Sbjct: 142 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201
Query: 196 MVSLISARTKL---RDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251
+VS+++A + L L MGK +H + L + +++ ++N LV MY K GK+ ++ LL
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG--ELNSFIINTLVAMYGKLGKLASSKVLL 259
Query: 252 GRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311
G + D+V W T++S ++ + EA EMV + IS +L
Sbjct: 260 GSF--GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL-------- 309
Query: 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL----------------FSEISEKNV 355
+C+ + L G +H Y KN +N + L F + ++ +
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369
Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACS-----------HG 403
LW ++IA Y+ H ++A+ LF+ MEE+ G + T ++ AC HG
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHG 429
Query: 404 GLVDEGYD--------FLSKKSRVYNIKPKMQHYGCMVD--------------------- 434
+V G D + SR+ I M+ +G M D
Sbjct: 430 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489
Query: 435 ---LLGRAGHLEESA-----------NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
LL + +LE N IT M I P + S+L + H +A
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA------YA 543
Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513
K+ TD A L ++YAK G L MSR
Sbjct: 544 IKNNLATDVAVGSA---LVDMYAKCGCL-QMSR 572
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 22/257 (8%)
Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220
W ++ + RE + M G+ PD +L+ A L+D+E+GK +H +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 221 ESTMKI-SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
+ + S ++ N LV++Y KCG G K+ R I E + V W +L+S + +
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEM 182
Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY-IKKNQIS-- 336
A F M++ N+ + + ++ + L G VH Y ++K +++
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-----GLMMGKQVHAYGLRKGELNSF 237
Query: 337 -IDNIELAYDLFSEISEKNVYL----------WTSVIAAYAMAGHAQKAIDLFLEMEETG 385
I+ + Y +++ V L W +V+++ +A++ EM G
Sbjct: 238 IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG 297
Query: 386 TKPDQVTFIALLSACSH 402
+PD+ T ++L ACSH
Sbjct: 298 VEPDEFTISSVLPACSH 314
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
KCG L+ ++FD++P ++VI+WN +I Y G +E + LL M +GV P+EVT +S
Sbjct: 564 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623
Query: 199 LISARTKLRDLEMG-KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
+ +A + ++ G + ++ + ++ S +VD+ + G+I EA +L+ D
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683
Query: 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293
W++L+ N + E+ +NLI
Sbjct: 684 FNKAGAWSSLLGASRIHNNLE-----IGEIAAQNLI 714
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 201/644 (31%), Positives = 323/644 (50%), Gaps = 95/644 (14%)
Query: 64 LITTNLMRDPQISTQVFEF------LVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
L+ ++ + P Q+F V +GD+ A ++ ++ N+I N L+
Sbjct: 46 LVRSDYLTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHG-----MRAKNTITWNSLLI 100
Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
G ++ ++ E QLFD++P D S+N M+SCY + +
Sbjct: 101 GISKDP-----------------SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKA 143
Query: 178 LGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237
+M + D + ++I+ + ++E + L S M+ + N ++
Sbjct: 144 QSFFDRMPFK----DAASWNTMITGYARRGEMEKARELFY----SMMEKNEVSWNAMISG 195
Query: 238 YFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEM-VERNLISW 295
Y +CG + +A +++ V VV WT +++GY+K+ + + A +F +M V +NL++W
Sbjct: 196 YIECGDLEKASHF---FKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTW 252
Query: 296 TLMISGML-NQDAEFKYK----------------------SCASIGALYHGIWVHVYIKK 332
MISG + N E K C+ + AL G +H + K
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSK 312
Query: 333 NQISIDNIEL---------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
+ + D L A+ LF + +K+V W ++I+ YA G+A KA+ L
Sbjct: 313 STLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCL 372
Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
F EM + +PD +TF+A+L AC+H GLV+ G + R Y ++P+ HY CMVDLLG
Sbjct: 373 FREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLG 432
Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
RAG LEE+ I SMP P +++ +LL ACR H+NV+LAE A + L + + N +V
Sbjct: 433 RAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQ 492
Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
LANIYA R +D++R+R ++++ + K GYS IE VH F S D +P + I+
Sbjct: 493 LANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKK 552
Query: 558 LN-------------EIEMTL---QQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNN 601
L E+E L +++ ++ L H E+LAVAFG I + + I++ N
Sbjct: 553 LKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKN 612
Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
LRICGDCH +K S++ REI++RD RFH F+ G CSC DYW
Sbjct: 613 LRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 206/640 (32%), Positives = 317/640 (49%), Gaps = 80/640 (12%)
Query: 70 MRDPQIST---------QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII--------- 111
+ +P IS+ Q+ + L G L A +++ Q P + + +I
Sbjct: 34 LNNPSISSGAGAKISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSL 93
Query: 112 -------ENQLINGYPQEVFAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNT 163
+ L NG Q+ F L T+ + + + G + ++FDK R + WN
Sbjct: 94 SDALRVHRHILDNGSDQDPF-----LATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNA 148
Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVT----MVSLISARTKLRDLEMGKNLHLFL 219
+ T G E LGL KM GV D T + + +++ + L GK +H L
Sbjct: 149 LFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHL 208
Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
++ LVDMY + G + A + G + +VV W+ +++ Y K+ + E
Sbjct: 209 TRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR--NVVSWSAMIACYAKNGKAFE 266
Query: 280 ARRLFDEMVERNLISW---TLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS 336
A R F EM+ S M+S + ++CAS+ AL G +H YI + +
Sbjct: 267 ALRTFREMMRETKDSSPNSVTMVSVL---------QACASLAALEQGKLIHGYILRRGLD 317
Query: 337 ---------------IDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM 381
+E+ +F + +++V W S+I++Y + G+ +KAI +F EM
Sbjct: 318 SILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEM 377
Query: 382 EETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441
G P VTF+++L ACSH GLV+EG R + IKP+++HY CMVDLLGRA
Sbjct: 378 LANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANR 437
Query: 442 LEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501
L+E+A + M P +W SLL +CR H NV+LAE A + L +P N G +VLLA+I
Sbjct: 438 LDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADI 497
Query: 502 YAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
YA+A D++ R++ L GL+K G +E ++ F S D FNP E+I+ L ++
Sbjct: 498 YAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKL 557
Query: 562 EMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIVNNLRIC 605
++++G + L H E+LA+AFGLI+TS+ IRI NLR+C
Sbjct: 558 AEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLC 617
Query: 606 GDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
DCH F K S+ +EI++RD RFHRF+ G CSC DYW
Sbjct: 618 EDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 322 bits (826), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 185/544 (34%), Positives = 277/544 (50%), Gaps = 53/544 (9%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
K GKL + + +DV+SW TMI+ YT + L +M G+ DEV + +
Sbjct: 537 KLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTN 596
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
+SA L+ L+ G+ +H S N LV +Y +CGKI E+ L + +
Sbjct: 597 AVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES--YLAFEQTEA 654
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF--KYKSCAS 316
D + W LVSG+ +S +EA R+F M G+ N + F K+ +
Sbjct: 655 GDNIAWNALVSGFQQSGNNEEALRVFVRMNRE----------GIDNNNFTFGSAVKAASE 704
Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
+ G VH I K + +I A F E+S KN W ++
Sbjct: 705 TANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAI 764
Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
I AY+ G +A+D F +M + +P+ VT + +LSACSH GLVD+G + + Y
Sbjct: 765 INAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYG 824
Query: 422 IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481
+ PK +HY C+VD+L RAG L + FI MPI PD +W +LL AC H+N+++ E A
Sbjct: 825 LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAA 884
Query: 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541
HL E +P + +VLL+N+YA + + D R K+++ G+KK+ G S IE +H F
Sbjct: 885 HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 944
Query: 542 TSGDIFNPHSEEI--------------------YLMLNEIEMTLQQQGLQETSLQHRERL 581
GD +P ++EI + +LNE LQ + H E+L
Sbjct: 945 YVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNE----LQHEQKDPIIFIHSEKL 1000
Query: 582 AVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSC 641
A++FGL+S I ++ NLR+C DCH+++K S+V NREI++RD RFH F+GG CSC
Sbjct: 1001 AISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSC 1060
Query: 642 RDYW 645
+DYW
Sbjct: 1061 KDYW 1064
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 107/482 (22%), Positives = 201/482 (41%), Gaps = 79/482 (16%)
Query: 49 RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWN 108
++ S+DE ++HS ++ L + +S ++F+F +F GDL A ++ + E I WN
Sbjct: 96 KTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWN 155
Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNK---CGKLKE-------------------- 145
+I+ EVF +++ +V+ V N+ G L+
Sbjct: 156 KMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 215
Query: 146 --------VC-----------------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
VC ++FD L +D SW MIS + E + L
Sbjct: 216 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 275
Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
M G+ P S++SA K+ LE+G+ LH + + + N LV +YF
Sbjct: 276 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 335
Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
G + A+ + + + D V + TL++G + ++A LF M L + ++
Sbjct: 336 LGNLISAEHIFSN--MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLA 393
Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYD 345
++ +C++ G L+ G +H Y K + +N IE A D
Sbjct: 394 SLV--------VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALD 445
Query: 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405
F E +NV LW ++ AY + + + +F +M+ P+Q T+ ++L C G
Sbjct: 446 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 505
Query: 406 VDEGYDFLSKKSRVYNIKPKMQHYGC--MVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
++ G S++ ++ Y C ++D+ + G L+ + + + DV W++
Sbjct: 506 LELGEQI---HSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTT 561
Query: 464 LL 465
++
Sbjct: 562 MI 563
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 162/362 (44%), Gaps = 49/362 (13%)
Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
L KC ++ F + +V+ WN M+ Y + R + +M E + P++ T
Sbjct: 433 LYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYT 492
Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
S++ +L DLE+G+ +H + ++ +++ + + L+DMY K GK+ A +L R+
Sbjct: 493 YPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA 552
Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
DVV WTT+++GY + N D+A F +M++R + S + ++ ++ +CA
Sbjct: 553 GK--DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVS--------ACA 602
Query: 316 SIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTS 360
+ AL G +H + S D IE +Y F + + W +
Sbjct: 603 GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 662
Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-----------HGGLVDEG 409
+++ + +G+ ++A+ +F+ M G + TF + + A S H + G
Sbjct: 663 LVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTG 722
Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
YD ++ V N ++ + + G + ++ + +VS W++++ A
Sbjct: 723 YD---SETEVCN---------ALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYS 769
Query: 470 CH 471
H
Sbjct: 770 KH 771
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 34/324 (10%)
Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
G L +F + RD +++NT+I+ + G + + L +M +G+ PD T+ SL+
Sbjct: 337 GNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLV 396
Query: 201 SARTKLRDLEMGKNLHLFLEE----STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256
A + L G+ LH + + S KI G+LLN +Y KC I A E+
Sbjct: 397 VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLN----LYAKCADIETALDYFLETEV 452
Query: 257 DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316
+ +VVLW ++ Y ++ + R+F +M ++ +L K+C
Sbjct: 453 E--NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSIL--------KTCIR 502
Query: 317 IGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSV 361
+G L G +H I K ++ ++ A+D+ + K+V WT++
Sbjct: 503 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTM 562
Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421
IA Y KA+ F +M + G + D+V +SAC+ + EG + ++ V
Sbjct: 563 IAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSG 621
Query: 422 IKPKMQHYGCMVDLLGRAGHLEES 445
+ +V L R G +EES
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEES 645
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/421 (22%), Positives = 182/421 (43%), Gaps = 64/421 (15%)
Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
G L ++FD++P R + +WN MI S + E GL +M +E V+P+E T ++
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVL 193
Query: 201 SA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
A R ++ + +H + ++ S + N L+D+Y + G + A+++ +
Sbjct: 194 EACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-- 251
Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
D W ++SG K+ EA RLF +M ++ S +L+ +C I +
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLS--------ACKKIES 303
Query: 320 LYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAA 364
L G +H + K S D N+ A +FS +S+++ + ++I
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363
Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV-YNIK 423
+ G+ +KA++LF M G +PD T +L+ ACS G + G + +++ +
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423
Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSM------------------------------- 452
K++ G +++L + +E + ++
Sbjct: 424 NKIE--GALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 481
Query: 453 ---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRL 508
I P+ + S+L+ C +++L E + +T+ LN +L ++YAK G+L
Sbjct: 482 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKL 541
Query: 509 D 509
D
Sbjct: 542 D 542
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 28/266 (10%)
Query: 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194
L ++CGK++E F++ D I+WN ++S + G E L + +M EG+ +
Sbjct: 634 TLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNF 693
Query: 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY 254
T S + A ++ +++ GK +H + ++ + N L+ MY KCG I +A+K
Sbjct: 694 TFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQF--L 751
Query: 255 EIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
E+ + V W +++ Y K EA FD+M+ N+ + + G+L+ +C
Sbjct: 752 EVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLS--------AC 803
Query: 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
+ IG + GI +++ Y L + + V+ AG +A
Sbjct: 804 SHIGLVDKGI----------AYFESMNSEYGLSPKPEH-----YVCVVDMLTRAGLLSRA 848
Query: 375 IDLFLEMEETGTKPDQVTFIALLSAC 400
+ EM KPD + + LLSAC
Sbjct: 849 KEFIQEMP---IKPDALVWRTLLSAC 871
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 322 bits (825), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 198/636 (31%), Positives = 315/636 (49%), Gaps = 76/636 (11%)
Query: 49 RSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
+SC+ S+ +++H L+ + D I + GD A + + ++
Sbjct: 52 QSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGR-----MR 106
Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
N + N LINGY + G L ++FD++P+R + +WN MI
Sbjct: 107 KKNYMSSNILINGYV------------------RAGDLVNARKVFDEMPDRKLTTWNAMI 148
Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
+ EGL L +M G SPDE T+ S+ S LR + +G+ +H + + ++
Sbjct: 149 AGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLE 208
Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
+ + + L MY + GK+ + + ++ + ++V W TL+ G ++ + L+
Sbjct: 209 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR--NLVAWNTLIMGNAQNGCPETVLYLYK 266
Query: 286 EM----VERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH---VYIKKNQISID 338
M N I++ ++S SC+ + G +H + I + +
Sbjct: 267 MMKISGCRPNKITFVTVLS------------SCSDLAIRGQGQQIHAEAIKIGASSVVAV 314
Query: 339 NIEL------------AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETG 385
L A FSE +++ +W+S+I+AY G +AI+LF M E+T
Sbjct: 315 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTN 374
Query: 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445
+ ++V F+ LL ACSH GL D+G + Y KP ++HY C+VDLLGRAG L+++
Sbjct: 375 MEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQA 434
Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505
I SMPI D+ IW +LL AC H+N ++A+ FK + + DP + +VLLAN++A A
Sbjct: 435 EAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASA 494
Query: 506 GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTL 565
R D+S +R +RD +KK+ G S E G VH+F GD S+EIY L E+ + +
Sbjct: 495 KRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEM 554
Query: 566 QQQGLQETS----------------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCH 609
+ +G + + +QH E+LAVAF L+ E IRI+ NLR+C DCH
Sbjct: 555 KLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCH 614
Query: 610 SFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
K S + NREI +RD RFH F G+CSC DYW
Sbjct: 615 VAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 162/377 (42%), Gaps = 53/377 (14%)
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
I + T + L GK LH L S + N+L+ MY K G A + GR + +
Sbjct: 50 FIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGR--MRK 107
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML----NQDA------- 307
+ + L++GYV++ + AR++FDEM +R L +W MI+G++ N++
Sbjct: 108 KNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM 167
Query: 308 --------EFK----YKSCASIGALYHGIWVHVYIKKNQISID---NIELAY-------- 344
E+ + A + ++ G +H Y K + +D N LA+
Sbjct: 168 HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKL 227
Query: 345 ----DLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
+ + +N+ W ++I A G + + L+ M+ +G +P+++TF+ +LS+C
Sbjct: 228 QDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSC 287
Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
S + +G ++ ++ + ++ + + G L ++A + +V +
Sbjct: 288 SDLAIRGQGQQIHAEAIKI-GASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEV-M 345
Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
WSS++ A H A F + E + L +YA + L+D
Sbjct: 346 WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACS---------HSGLKD 396
Query: 521 MGLKKQLGYSLIEQGGF 537
GL +L ++E+ GF
Sbjct: 397 KGL--ELFDMMVEKYGF 411
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 198/610 (32%), Positives = 306/610 (50%), Gaps = 103/610 (16%)
Query: 136 LLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
L+ LK+V ++FD++P R+VI N MI Y + G Y EG+ + M V PD
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139
Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
T ++ A + + +G+ +H + + + + N LV MY KCG + EA+ +L
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199
Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEA-------------------------------- 280
E+ DVV W +LV GY ++ D+A
Sbjct: 200 --EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE 257
Query: 281 -----RRLFDEMVERNLISWTLMI-----SGMLNQDAEFKYK------------------ 312
+ +F +M +++L+SW +MI + M + E +
Sbjct: 258 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLP 317
Query: 313 SCASIGALYHGIWVHVYIKKNQISIDNI----------------ELAYDLFSEISEKNVY 356
+C AL G +H YI++ ++ I N+ E A D+F + ++V
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKL-IPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376
Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416
WT++I+AY +G A+ LF +++++G PD + F+ L+ACSH GL++EG
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436
Query: 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476
+ Y I P+++H CMVDLLGRAG ++E+ FI M + P+ +W +LL ACR H + +
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496
Query: 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGG 536
A L + P G +VLL+NIYAKAGR ++++ IR ++ GLKK G S +E
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 556
Query: 537 FVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQ-HRER 580
+H F GD +P S+EIY L+ + +++ G +ET L H E+
Sbjct: 557 IIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEK 616
Query: 581 LAVAFGLISTSEK-----TTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
LA+ F L++T E+ TIRI NLRICGDCH K+ SQ+ +REI+IRD RFH F+
Sbjct: 617 LAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676
Query: 636 GGQCSCRDYW 645
G CSC DYW
Sbjct: 677 FGVCSCGDYW 686
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
V + + S+ ++ A +F EI E+NV + +I +Y G + + +F M +
Sbjct: 78 VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVR 137
Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
PD TF +L ACS G + G ++V + + +V + G+ G L E+
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKV-GLSSTLFVGNGLVSMYGKCGFLSEARL 196
Query: 448 FITSMPIPPDVSIWSSL-------------LRACRCHQNVKLAEHA 480
+ M DV W+SL L CR ++VK++ A
Sbjct: 197 VLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDA 241
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 179/539 (33%), Positives = 292/539 (54%), Gaps = 42/539 (7%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
KCG L ++F + ++ V SWN +I + R L +M G+ PD T+ S
Sbjct: 442 KCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCS 501
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
L+SA +KL+ L +GK +H F+ + ++ + ++ +Y CG++ Q L E +
Sbjct: 502 LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME--D 559
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
+V W T+++GY+++ D A +F R ++ + + + G+ + +C+ +
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVF-----RQMVLYGIQLCGISMMPV---FGACSLLP 611
Query: 319 ALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIA 363
+L G H Y K+ + D +I + +F+ + EK+ W ++I
Sbjct: 612 SLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIM 671
Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
Y + G A++AI LF EM+ TG PD +TF+ +L+AC+H GL+ EG +L + + +K
Sbjct: 672 GYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLK 731
Query: 424 PKMQHYGCMVDLLGRAGHLEESANFIT-SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
P ++HY C++D+LGRAG L+++ + M DV IW SLL +CR HQN+++ E
Sbjct: 732 PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAA 791
Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
L E +P +VLL+N+YA G+ +D+ ++R ++ +M L+K G S IE V F
Sbjct: 792 KLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFV 851
Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFG 586
G+ F EEI + + +EM + + G + ++ H E+LA+ +G
Sbjct: 852 VGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYG 911
Query: 587 LISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
LI TSE TTIR+ NLRIC DCH+ K+ S+V REIV+RDN RFH F+ G CSC DYW
Sbjct: 912 LIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/500 (20%), Positives = 193/500 (38%), Gaps = 88/500 (17%)
Query: 60 IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGY 119
+H ++ T L+ D + + F G + A Q+ E + WNS+I NG+
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268
Query: 120 PQEVF--------------------------------------------AIYLYLVTRTV 135
+E F A+ L L V
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELV 328
Query: 136 LLN-------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM--GA 186
L N KCG + +F N++V+SWNTM+ +++ G +L +M G
Sbjct: 329 LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGG 388
Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
E V DEVT+++ + L K LH + + + + N V Y KCG +
Sbjct: 389 EDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSY 448
Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
AQ++ + I V W L+ G+ +SN+ + +M L+ + + +L+
Sbjct: 449 AQRVF--HGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS-- 504
Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
+C+ + +L G VH +I +N + D + LF +
Sbjct: 505 ------ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME 558
Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
+K++ W +VI Y G +A+ +F +M G + ++ + + ACS +
Sbjct: 559 DKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLR---- 614
Query: 412 FLSKKSRVYNIKPKMQ---HYGC-MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
L +++ Y +K ++ C ++D+ + G + +S+ + S W++++
Sbjct: 615 -LGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMG 672
Query: 468 CRCHQNVKLAEHAFKHLTET 487
H K A F+ + T
Sbjct: 673 YGIHGLAKEAIKLFEEMQRT 692
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/289 (20%), Positives = 117/289 (40%), Gaps = 53/289 (18%)
Query: 33 KFANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
K + + P S V + +CS + + +H +I L RD + V + G+L
Sbjct: 488 KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGEL 547
Query: 90 GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLL------------ 137
Q + ++ + WN++I L NG+P ++ +V + L
Sbjct: 548 CTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 607
Query: 138 -----------------------------------NKCGKLKEVCQLFDKLPNRDVISWN 162
K G + + ++F+ L + SWN
Sbjct: 608 SLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWN 667
Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
MI Y G+ +E + L +M G +PD++T + +++A + G +L +S
Sbjct: 668 AMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLR-YLDQMKS 726
Query: 223 TMKISGSLLNY--LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
+ + +L +Y ++DM + G++ +A +++ +E DV +W +L+S
Sbjct: 727 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 775
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 137/317 (43%), Gaps = 34/317 (10%)
Query: 130 LVTRTVLLNK-CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM-GAE 187
L TR + + CG + +FD L ++++ WN +IS Y+ +Y E L +M
Sbjct: 122 LCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTT 181
Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
+ PD T +I A + D+ +G +H + ++ + + N LV Y G + +A
Sbjct: 182 DLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDA 241
Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-------ISWTLMIS 300
+L + E ++V W +++ + + +E+ L EM+E N ++ + +
Sbjct: 242 LQLFDI--MPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 299
Query: 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN-----------IELAYDLFSE 349
+ ++ E +G HG V + + K ++ ++N I A +F
Sbjct: 300 PVCAREREI------GLGKGVHGWAVKLRLDK-ELVLNNALMDMYSKCGCITNAQMIFKM 352
Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG--TKPDQVTFIALLSACSHGGL-- 405
+ KNV W +++ ++ G D+ +M G K D+VT + + C H
Sbjct: 353 NNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLP 412
Query: 406 -VDEGYDFLSKKSRVYN 421
+ E + + K+ VYN
Sbjct: 413 SLKELHCYSLKQEFVYN 429
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 43/230 (18%)
Query: 199 LISARTKLRDLEMGKNLHLFLEEST-MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
L+ A K +D+EMG+ +H + ST ++ L ++ MY CG ++ R+ D
Sbjct: 90 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDS-----RFVFD 144
Query: 258 EV---DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY--- 311
+ ++ W ++S Y ++ DE F EM IS T ++ F Y
Sbjct: 145 ALRSKNLFQWNAVISSYSRNELYDEVLETFIEM-----ISTTDLLPD------HFTYPCV 193
Query: 312 -KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNV 355
K+CA + + G+ VH + K + D + A LF + E+N+
Sbjct: 194 IKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNL 253
Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLE-MEETGTK---PDQVTFIALLSACS 401
W S+I ++ G ++++ L E MEE G PD T + +L C+
Sbjct: 254 VSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 186/542 (34%), Positives = 288/542 (53%), Gaps = 50/542 (9%)
Query: 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
N+C K E+ LF++ N D+++WN M++ YT + L L + M +G D+ T+
Sbjct: 465 NRCMKEAEI--LFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLA 521
Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
++ L + GK +H + +S + + + ++DMY KCG + AQ + D
Sbjct: 522 TVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ-----FAFD 576
Query: 258 EV---DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314
+ D V WTT++SG +++ E + A +F +M ++ I+ + K SC
Sbjct: 577 SIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLA------KASSC 630
Query: 315 ASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWT 359
+ AL G +H K + D +I+ AY LF I N+ W
Sbjct: 631 --LTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 688
Query: 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419
+++ A G ++ + LF +M+ G KPD+VTFI +LSACSH GLV E Y +
Sbjct: 689 AMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748
Query: 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
Y IKP+++HY C+ D LGRAG ++++ N I SM + S++ +LL ACR + + +
Sbjct: 749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808
Query: 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVH 539
L E +PL+ A+VLL+N+YA A + D+M R ++ +KK G+S IE +H
Sbjct: 809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868
Query: 540 KFTSGDIFNPHSEEIYLMLNEIEMTLQQQG-LQETSLQ---------------HRERLAV 583
F D N +E IY + ++ ++Q+G + ET H E+LAV
Sbjct: 869 IFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAV 928
Query: 584 AFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
AFGL+ST T IR++ NLR+CGDCH+ MK ++VYNREIV+RD RFHRF+ G CSC D
Sbjct: 929 AFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD 988
Query: 644 YW 645
YW
Sbjct: 989 YW 990
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 165/376 (43%), Gaps = 32/376 (8%)
Query: 128 LYLVTRTVLLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKM 184
L L L+N KL++ +FD + RD+ISWN++I+ G+ E + L ++
Sbjct: 348 LMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQL 407
Query: 185 GAEGVSPDEVTMVSLISARTKLRD-LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243
G+ PD+ TM S++ A + L + L + K +H+ + + L+D Y +
Sbjct: 408 LRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRC 467
Query: 244 IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303
+ EA+ L R+ D+V W +++GY +S++ + +LF M ++ S ++ +
Sbjct: 468 MKEAEILFERHNF---DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATV- 523
Query: 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFS 348
+K+C + A+ G VH Y K+ +D ++ A F
Sbjct: 524 -------FKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFD 576
Query: 349 EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408
I + WT++I+ G ++A +F +M G PD+ T L A S +++
Sbjct: 577 SIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQ 636
Query: 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468
G + ++ N +VD+ + G ++++ + + +++ W+++L
Sbjct: 637 GRQIHANALKL-NCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGL 694
Query: 469 RCHQNVKLAEHAFKHL 484
H K FK +
Sbjct: 695 AQHGEGKETLQLFKQM 710
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/461 (20%), Positives = 189/461 (40%), Gaps = 50/461 (10%)
Query: 58 ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
E H + L D ++ + + G + + + + ++ +WN +++ L
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224
Query: 118 GYPQEVF--------------AIYLYLVTRTVLLNK-CGKLKEVCQLFDKLPNRDVISWN 162
G+ +E I L L+ R + G++K D ++I N
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRN 284
Query: 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222
+S Y G Y L + M V D+VT + +++ K+ L +G+ +H +
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344
Query: 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARR 282
+ + ++ N L++MY K K G A+ + + E D++ W ++++G ++ EA
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFD--NMSERDLISWNSVIAGIAQNGLEVEAVC 402
Query: 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG-ALYHGIWVHVY-IKKNQISIDNI 340
LF +++ L ++ +L K+ +S+ L VHV+ IK N +S +
Sbjct: 403 LFMQLLRCGLKPDQYTMTSVL--------KAASSLPEGLSLSKQVHVHAIKINNVSDSFV 454
Query: 341 ELAY-DLFS------------EISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
A D +S E ++ W +++A Y + K + LF M + G +
Sbjct: 455 STALIDAYSRNRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGER 514
Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGCMVDLLGRAGHLE 443
D T + C +++G K+ Y IK + ++D+ + G +
Sbjct: 515 SDDFTLATVFKTCGFLFAINQG-----KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569
Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
+ S+P+P DV+ W++++ C + + A H F +
Sbjct: 570 AAQFAFDSIPVPDDVA-WTTMISGCIENGEEERAFHVFSQM 609
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 32/207 (15%)
Query: 208 DLEMGKNLH---LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW 264
DL +GK H L EE+ + L+N L+ MY KCG + A+++ + + + D+V W
Sbjct: 54 DLMLGKCTHARILTFEENPERF---LINNLISMYSKCGSLTYARRVFDK--MPDRDLVSW 108
Query: 265 TTLVSGYVKSNE-----RDEARRLF----DEMVERNLISWTLMI-----SGMLNQDAEFK 310
++++ Y +S+E +A LF ++V + ++ + M+ SG + F
Sbjct: 109 NSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFH 168
Query: 311 YKSCASIG----ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366
+C IG G V++Y+K ++ + LF E+ ++V LW ++ AY
Sbjct: 169 GYAC-KIGLDGDEFVAGALVNIYLKFGKVKEGKV-----LFEEMPYRDVVLWNLMLKAYL 222
Query: 367 MAGHAQKAIDLFLEMEETGTKPDQVTF 393
G ++AIDL +G P+++T
Sbjct: 223 EMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 34/269 (12%)
Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS-----MGMYREGLGLLSKMGAEGVS 190
+ +KCG L ++FDK+P+RD++SWN++++ Y + ++ L + + V
Sbjct: 83 MYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVY 142
Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
+T+ ++ + ++ H + + + + LV++Y K GK+ E + L
Sbjct: 143 TSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVL 202
Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
E+ DVVLW ++ Y++ ++EA L S SG LN + E
Sbjct: 203 FE--EMPYRDVVLWNLMLKAYLEMGFKEEAIDL----------SSAFHSSG-LNPN-EIT 248
Query: 311 YKSCASI-GALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
+ A I G V + N S SEI +N L + Y +G
Sbjct: 249 LRLLARISGDDSDAGQVKSFANGNDASS---------VSEIIFRNKGL-----SEYLHSG 294
Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLS 398
+ F +M E+ + DQVTFI +L+
Sbjct: 295 QYSALLKCFADMVESDVECDQVTFILMLA 323
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/285 (18%), Positives = 115/285 (40%), Gaps = 49/285 (17%)
Query: 53 SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIE 112
+I++ +++H++ I + D +S+ + + V GD+ AQ P+ W ++I
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMIS 591
Query: 113 NQLINGYPQEVFAIYLYLVTRTVL-------------------------------LN--- 138
+ NG + F ++ + VL LN
Sbjct: 592 GCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTN 651
Query: 139 -------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185
KCG + + LF ++ ++ +WN M+ G +E L L +M
Sbjct: 652 DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMK 711
Query: 186 AEGVSPDEVTMVSLISARTKLRDL-EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244
+ G+ PD+VT + ++SA + + E K++ + +K + L D + G +
Sbjct: 712 SLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLV 771
Query: 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
+A+ L+ + E ++ TL++ + + +R+ +++E
Sbjct: 772 KQAENLIESMSM-EASASMYRTLLAACRVQGDTETGKRVATKLLE 815
Score = 37.0 bits (84), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 47/258 (18%), Positives = 105/258 (40%), Gaps = 35/258 (13%)
Query: 33 KFANVCPVSLDVIMVERSCSSIDEFER---IHSHLITTNLMRDPQISTQVFEFLVFTGDL 89
+ V P + + ++ S + E+ IH++ + N DP + T + + G +
Sbjct: 610 RLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSI 669
Query: 90 GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL 149
A + ++ + I WN+++ V L + G+ KE QL
Sbjct: 670 DDAYCLFKRIEMMNITAWNAML-----------------------VGLAQHGEGKETLQL 706
Query: 150 FDKLPN----RDVISWNTMISCYTSMGMYREGLGLLSKM-GAEGVSPDEVTMVSLISART 204
F ++ + D +++ ++S + G+ E + M G G+ P+ L A
Sbjct: 707 FKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALG 766
Query: 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR-YEIDEVDVVL 263
+ ++ +NL +E +M+ S S+ L+ G +++ + E++ +D
Sbjct: 767 RAGLVKQAENL---IESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA 823
Query: 264 WTTLVSGYVKSNERDEAR 281
+ L + Y +++ DE +
Sbjct: 824 YVLLSNMYAAASKWDEMK 841
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 319 bits (818), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 194/599 (32%), Positives = 304/599 (50%), Gaps = 90/599 (15%)
Query: 51 CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLV--FTGDLGYAQQIIRQGDEPEIKIWN 108
C + D+F+++HS IT + +P ++F F G + YA ++ + EP++ +WN
Sbjct: 44 CKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWN 103
Query: 109 SIIENQLINGYPQEVFAIYLYLVTRTV---------LLN---------KCGK-------- 142
++I+ E +YL ++ V LLN CGK
Sbjct: 104 NMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVK 163
Query: 143 ---------------LKEVCQL-------FDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
+ +C L FD+ DV SWN MIS Y M Y E + L
Sbjct: 164 FGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIEL 223
Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
L +M VSP VT++ ++SA +K++D ++ K +H ++ E + S L N LV+ Y
Sbjct: 224 LVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAA 283
Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
CG++ A ++ + DV+ WT++V GYV+ AR FD+M R+ ISWT+MI
Sbjct: 284 CGEMDIAVRIF--RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMID 341
Query: 301 GMLN--------------QDA-----EFKYKS----CASIGALYHGIWVHVYIKKNQISI 337
G L Q A EF S CA +G+L G W+ YI KN+I
Sbjct: 342 GYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN 401
Query: 338 DNI---------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382
D + E A +F ++ +++ + WT+++ A G Q+AI +F +M+
Sbjct: 402 DVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQ 461
Query: 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
+ +PD +T++ +LSAC+H G+VD+ F +K + I+P + HYGCMVD+LGRAG +
Sbjct: 462 DMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLV 521
Query: 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502
+E+ + MP+ P+ +W +LL A R H + +AE A K + E +P N + LL NIY
Sbjct: 522 KEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIY 581
Query: 503 AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561
A R D+ +R K+ D+ +KK G+SLIE GF H+F +GD + SEEIY+ L E+
Sbjct: 582 AGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEEL 640
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 318 bits (816), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 185/526 (35%), Positives = 290/526 (55%), Gaps = 36/526 (6%)
Query: 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207
+ F+ P + +W+++ISC+ + L L KM A + PD+ + S + L
Sbjct: 71 RAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILS 130
Query: 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267
++G+++H ++ + + LVDMY KCG+I A+K+ E+ + +VV W+ +
Sbjct: 131 RCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFD--EMPQRNVVTWSGM 188
Query: 268 VSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327
+ GY + E +EA LF E + NL S +++ A + +G HG+ +
Sbjct: 189 MYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCAN---STLLELGRQIHGLSIK 245
Query: 328 VYIKKNQISIDNI----------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
+ ++ E AY +F+E+ KN+ +W +++ AYA H QK I+L
Sbjct: 246 SSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIEL 305
Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS--KKSRVYNIKPKMQHYGCMVDL 435
F M+ +G KP+ +TF+ +L+ACSH GLVDEG + K+SR I+P +HY +VD+
Sbjct: 306 FKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESR---IEPTDKHYASLVDM 362
Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
LGRAG L+E+ IT+MPI P S+W +LL +C H+N +LA A + E P++ G H
Sbjct: 363 LGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMH 422
Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
+ L+N YA GR +D ++ R LRD G KK+ G S +E+ VH F +G+ + S+EIY
Sbjct: 423 ISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIY 482
Query: 556 LMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTSEKTTIRIV 599
L E+ +++ G +T H ERLA+AFGLI+ IR++
Sbjct: 483 EKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVM 542
Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
NLR+CGDCH+ +K S R I++RDN RFHRF+ G+CSC DYW
Sbjct: 543 KNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 122/263 (46%), Gaps = 29/263 (11%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
KCG++ ++FD++P R+V++W+ M+ Y MG E L L + E ++ ++ + S
Sbjct: 163 KCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSS 222
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
+IS LE+G+ +H +S+ S + + LV +Y KCG A ++ E+
Sbjct: 223 VISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFN--EVPV 280
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
++ +W ++ Y + + + LF M + + +LN +C+ G
Sbjct: 281 KNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLN--------ACSHAG 332
Query: 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
+ G + +K+++I E ++K+ + S++ AG Q+A+++
Sbjct: 333 LVDEGRYYFDQMKESRI-------------EPTDKH---YASLVDMLGRAGRLQEALEVI 376
Query: 379 LEMEETGTKPDQVTFIALLSACS 401
M P + + ALL++C+
Sbjct: 377 TNMP---IDPTESVWGALLTSCT 396
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 83/165 (50%), Gaps = 1/165 (0%)
Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
L +KCG + Q+F+++P +++ WN M+ Y ++ + L +M G+ P+ +T
Sbjct: 261 LYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFIT 320
Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
+++++A + ++ G+ ++ES ++ + LVDM + G++ EA +++
Sbjct: 321 FLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMP 380
Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
ID + V W L++ + A D++ E +S + IS
Sbjct: 381 IDPTESV-WGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHIS 424
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 40/258 (15%)
Query: 265 TTLVSGYVKSNERDEARRLFDEMVER--------------NLISW------TLMISGMLN 304
L++ Y KS ++RR F++ ++ N + W M++G L
Sbjct: 54 NNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLR 113
Query: 305 QDAEF---KYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDL 346
D KSCA + G VH K D I A +
Sbjct: 114 PDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKM 173
Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
F E+ ++NV W+ ++ YA G ++A+ LF E + +F +++S C++ L+
Sbjct: 174 FDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLL 233
Query: 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
+ G + S + +V L + G E + +P+ ++ IW+++L+
Sbjct: 234 ELGRQ-IHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPV-KNLGIWNAMLK 291
Query: 467 ACRCHQNVKLAEHAFKHL 484
A H + + FK +
Sbjct: 292 AYAQHSHTQKVIELFKRM 309
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 196/579 (33%), Positives = 297/579 (51%), Gaps = 86/579 (14%)
Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTKLRDLEM 211
P D +NT++ Y+ + + +M +G V PD + +I A R L
Sbjct: 65 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124
Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL-------------------- 251
G +H + ++ + L+ MY CG + A+K+
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184
Query: 252 -----GRYEIDEVDVVL----WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
G EI + +V W +++GY+K+ E + A+R+F EM R+ +SW+ MI G+
Sbjct: 185 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 244
Query: 303 LNQ---DAEFKY--------------------KSCASIGALYHGIWVHVYIKK------- 332
+ + F Y +C+ G+ G +H +++K
Sbjct: 245 AHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIV 304
Query: 333 --NQISID------NIELAYDLFSEISEKNVYL-WTSVIAAYAMAGHAQKAIDLFLEMEE 383
N ID N+ +A +F + EK + WTS+IA AM G ++A+ LF EM
Sbjct: 305 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 364
Query: 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443
G PD ++FI+LL ACSH GL++EG D+ S+ RVY+I+P+++HYGCMVDL GR+G L+
Sbjct: 365 YGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQ 424
Query: 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503
++ +FI MPIPP +W +LL AC H N++LAE + L E DP N G VLL+N YA
Sbjct: 425 KAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYA 484
Query: 504 KAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEM 563
AG+ D++ IR + +KK +SL+E G ++KFT+G+ E + L EI +
Sbjct: 485 TAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIIL 544
Query: 564 TLQQQG-----------------LQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICG 606
L+ + ++ +H E+LA+AF L S+ IRIV NLRIC
Sbjct: 545 RLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICR 604
Query: 607 DCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
DCH+ MK+TS+VY EI++RD RFH F+ G CSCRDYW
Sbjct: 605 DCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 317 bits (811), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 191/663 (28%), Positives = 332/663 (50%), Gaps = 92/663 (13%)
Query: 49 RSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
+ C+ + F+ +IH + L D + +F + G +G A+++ + + ++
Sbjct: 124 KVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDV- 182
Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR----DVISW 161
+ + L+ Y ++ G L+EV ++ ++ + +++SW
Sbjct: 183 ----VTCSALLCAYARK------------------GCLEEVVRILSEMESSGIEANIVSW 220
Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
N ++S + G ++E + + K+ G PD+VT+ S++ + L MG+ +H ++ +
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280
Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
+ +++ ++DMY K G + L ++E+ E V ++G ++ D+A
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVC--NAYITGLSRNGLVDKAL 338
Query: 282 RLFD----EMVERNLISWTLMISGMLNQDAEFK-----------------------YKSC 314
+F+ + +E N++SWT +I+G + + +C
Sbjct: 339 EMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPAC 398
Query: 315 ASIGALYHGIWVHVYIKKNQISIDN----------------IELAYDLFSEISEKNVYLW 358
+I AL HG H + + + +DN I L+ +F+ + KN+ W
Sbjct: 399 GNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457
Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
S++ ++M G A++ + +F + T KPD ++F +LLSAC GL DEG+ + S
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517
Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
Y IKP+++HY CMV+LLGRAG L+E+ + I MP PD +W +LL +CR NV LAE
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577
Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
A + L +P N G +VLL+NIYA G ++ IR K+ +GLKK G S I+ V
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRV 637
Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETSLQ--------HRERLA 582
+ +GD +P ++I ++EI +++ G L + Q H E+LA
Sbjct: 638 YTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLA 697
Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
V FGL++T + T ++++ NLRICGDCH+ +K S REI IRD RFH F+ G CSC
Sbjct: 698 VVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCG 757
Query: 643 DYW 645
D+W
Sbjct: 758 DFW 760
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/417 (19%), Positives = 163/417 (39%), Gaps = 83/417 (19%)
Query: 149 LFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208
+ +P+ + S++++I T ++ + +G+ S+M + G+ PD + +L +L
Sbjct: 72 VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSA 131
Query: 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLV 268
++GK +H S + + + + MY +CG++G+A+K+ R + + DVV + L+
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDR--MSDKDVVTCSALL 189
Query: 269 SGYVKSNERDEARRLFDEM----VERNLISWTLMISGM----LNQDAEFKYKSCASIG-- 318
Y + +E R+ EM +E N++SW ++SG +++A ++ +G
Sbjct: 190 CAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFC 249
Query: 319 -----------------ALYHGIWVHVYIKKNQISIDNIELA---------------YDL 346
L G +H Y+ K + D ++ L
Sbjct: 250 PDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISL 309
Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF---------------------------- 378
F++ + + I + G KA+++F
Sbjct: 310 FNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKD 369
Query: 379 -------LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG- 430
EM+ G KP+ VT ++L AC + + G RV+ + H G
Sbjct: 370 IEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDN--VHVGS 427
Query: 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
++D+ + G + S MP ++ W+SL+ H K F+ L T
Sbjct: 428 ALIDMYAKCGRINLSQIVFNMMPT-KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 198/667 (29%), Positives = 328/667 (49%), Gaps = 93/667 (13%)
Query: 59 RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
++H+ ++ L + +S + + G++ A+ + + + + WNS+I NG
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274
Query: 119 YPQEVFAIYLYLVTRTVLLNK---------CGKLKEV-------CQ------LFDKLPNR 156
E ++ + V L++ C LKE+ C LFD+
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334
Query: 157 --------------------------DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
+V+SW MIS + E + L S+M +GV
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVR 394
Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
P+E T +++A + E +H + ++ + S ++ L+D Y K GK+ EA K+
Sbjct: 395 PNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKV 450
Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
ID+ D+V W+ +++GY ++ E + A ++F E+ + + S +LN A
Sbjct: 451 FS--GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA-- 506
Query: 311 YKSCASIGALYHGIWVH---------------VYIKKNQISIDNIELAYDLFSEISEKNV 355
+ G +HG + +Y KK NIE A ++F EK++
Sbjct: 507 TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG-----NIESAEEVFKRQREKDL 561
Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415
W S+I+ YA G A KA+D+F EM++ K D VTFI + +AC+H GLV+EG +
Sbjct: 562 VSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDI 621
Query: 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475
R I P +H CMVDL RAG LE++ I +MP P +IW ++L ACR H+ +
Sbjct: 622 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTE 681
Query: 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQG 535
L A + + P + A+VLL+N+YA++G + +++R + + +KK+ GYS IE
Sbjct: 682 LGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVK 741
Query: 536 GFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETS---------------LQHRE 579
+ F +GD +P ++IY+ L ++ L+ G + +TS QH E
Sbjct: 742 NKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSE 801
Query: 580 RLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG-GQ 638
RLA+AFGLI+T + + + I+ NLR+CGDCH +K+ +++ REIV+RD+ RFH F G
Sbjct: 802 RLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGV 861
Query: 639 CSCRDYW 645
CSC D+W
Sbjct: 862 CSCGDFW 868
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 102/408 (25%), Positives = 194/408 (47%), Gaps = 43/408 (10%)
Query: 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163
+++ +++N L P I LYL KCG +++ LFDK + V++WN+
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYL--------KCGNVRKARILFDKTEVKSVVTWNS 265
Query: 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
MIS Y + G+ E LG+ M V E + S+I L++L + LH + +
Sbjct: 266 MISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG 325
Query: 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARR 282
++ L+ Y KC + +A +L EI V +VV WT ++SG+++++ ++EA
Sbjct: 326 FLFDQNIRTALMVAYSKCTAMLDALRLFK--EIGCVGNVVSWTAMISGFLQNDGKEEAVD 383
Query: 283 LFDEM----VERNLISWTLMISGML--------NQDAEFKYKSCASIGALYHGIWVHVYI 330
LF EM V N +++++++ + Q + Y+ +++G + Y+
Sbjct: 384 LFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTAL----LDAYV 439
Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
K + +E A +FS I +K++ W++++A YA G + AI +F E+ + G KP++
Sbjct: 440 K-----LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNE 494
Query: 391 VTFIALLSACSH-GGLVDEGYDFLSKKSRVYNIKPKMQHYGC----MVDLLGRAGHLEES 445
TF ++L+ C+ + +G F + IK ++ C ++ + + G++ ES
Sbjct: 495 FTFSSILNVCAATNASMGQGKQFHG-----FAIKSRLDSSLCVSSALLTMYAKKGNI-ES 548
Query: 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
A + D+ W+S++ H A FK + + DG
Sbjct: 549 AEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 596
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 166/373 (44%), Gaps = 50/373 (13%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
K K+ ++FD++ R+V++W T+IS Y M E L L +M EG P+ T +
Sbjct: 140 KGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAA 199
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
+ + G +H + ++ + + + N L+++Y KCG + +A+ L + E+
Sbjct: 200 ALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK- 258
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCAS 316
VV W +++SGY + EA +F +++ ++ + ++ F K CA+
Sbjct: 259 -SVVTWNSMISGYAANGLDLEALGMF----------YSMRLNYVRLSESSFASVIKLCAN 307
Query: 317 IGALYHGIWVHVYIKKNQISID-NIE----LAYD----------LFSEIS-EKNVYLWTS 360
+ L +H + K D NI +AY LF EI NV WT+
Sbjct: 308 LKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTA 367
Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS-------HGGLVDEGYDFL 413
+I+ + ++A+DLF EM+ G +P++ T+ +L+A H +V Y+
Sbjct: 368 MISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYE-- 425
Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
+ S V ++D + G +EE+A + + D+ WS++L
Sbjct: 426 -RSSTVGT---------ALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAGYAQTGE 474
Query: 474 VKLAEHAFKHLTE 486
+ A F LT+
Sbjct: 475 TEAAIKMFGELTK 487
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 119/299 (39%), Gaps = 71/299 (23%)
Query: 142 KLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS 201
+L LFDK P RD S+ +++ ++ G +E L + G+ D S++
Sbjct: 42 RLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLK 101
Query: 202 ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV 261
L D G+ LH +C K G DV
Sbjct: 102 VSATLCDELFGRQLHC----------------------QCIKFGFLD-----------DV 128
Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISG----------------MLNQ 305
+ T+LV Y+K + + R++FDEM ERN+++WT +ISG M N+
Sbjct: 129 SVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNE 188
Query: 306 DAE-FKYKSCASIGALY------HGIWVHVYIKKNQ---------------ISIDNIELA 343
+ + A++G L G+ VH + KN + N+ A
Sbjct: 189 GTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKA 248
Query: 344 YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
LF + K+V W S+I+ YA G +A+ +F M + + +F +++ C++
Sbjct: 249 RILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 264 WTTLVSGYVKSNERDEARRLFDEM------VERNLISWTLMISGMLNQDAEFKYKSCASI 317
+ +L+ G+ + EA+RLF + ++ ++ S L +S L + + C I
Sbjct: 61 YISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCI 120
Query: 318 G-ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
+ V + + N + +F E+ E+NV WT++I+ YA + +
Sbjct: 121 KFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLT 180
Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
LF+ M+ GT+P+ TF A L + G+ G
Sbjct: 181 LFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 316 bits (810), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 194/625 (31%), Positives = 322/625 (51%), Gaps = 76/625 (12%)
Query: 86 TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYL-----VTRTVLLN-- 138
G++ A+++ E + W ++++ + NG +++ + V+ TV+L
Sbjct: 92 NGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGF 151
Query: 139 -KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV 197
+ G++ + C+L++ +P++D I+ +MI G E + +M V +T
Sbjct: 152 LQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV----ITWT 207
Query: 198 SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID 257
++++ + ++ + + + E T S+L Y + G+I +A++L +E+
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMG----YVQNGRIEDAEEL---FEVM 260
Query: 258 EVD-VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI-----SG---------- 301
V V+ ++SG + E +ARR+FD M ERN SW +I +G
Sbjct: 261 PVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFI 320
Query: 302 -MLNQDAEFKYKS-------CASIGALYHGIWVHVYIKKNQISID--------------- 338
M Q + + CAS+ +L+HG VH + + Q +D
Sbjct: 321 LMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCG 380
Query: 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALL 397
+ + +F K++ +W S+I+ YA G ++A+ +F EM +G TKP++VTF+A L
Sbjct: 381 ELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATL 440
Query: 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457
SACS+ G+V+EG V+ +KP HY CMVD+LGRAG E+ I SM + PD
Sbjct: 441 SACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPD 500
Query: 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517
++W SLL ACR H + +AE K L E +P N G ++LL+N+YA GR D++ +R
Sbjct: 501 AAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKL 560
Query: 518 LRDMGLKKQLGYSLIEQGGFVHKFTSGDI-FNPHSEEIYLMLNEIEMTLQQQGLQE---- 572
++ ++K G S E VH FT G I +P E I +L+E++ L++ G
Sbjct: 561 MKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSY 620
Query: 573 -----------TSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYN 620
SL+ H ERLAVA+ L+ SE IR++ NLR+C DCH+ +K+ S+V
Sbjct: 621 ALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKE 680
Query: 621 REIVIRDNGRFHRFQGGQCSCRDYW 645
REI++RD RFH F+ G+CSC+DYW
Sbjct: 681 REIILRDANRFHHFRNGECSCKDYW 705
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 150/338 (44%), Gaps = 60/338 (17%)
Query: 133 RTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD 192
R L++ GK+ E +LFD ++ + SWN+M++ Y + M R+ L +M PD
Sbjct: 23 RITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM------PD 76
Query: 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252
++IS N LV Y K G+I EA+K+
Sbjct: 77 R----NIIS-----------------------------WNGLVSGYMKNGEIDEARKVFD 103
Query: 253 RYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN----QDAE 308
+ E +VV WT LV GYV + + D A LF +M E+N +SWT+M+ G L DA
Sbjct: 104 L--MPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDAC 161
Query: 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368
Y+ + +H K+ + ++ A ++F E+SE++V WT+++ Y
Sbjct: 162 KLYEMIPDKDNIARTSMIHGLCKEGR-----VDEAREIFDEMSERSVITWTTMVTGYGQN 216
Query: 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH 428
A +F M E +V++ ++L G +++ + V +KP +
Sbjct: 217 NRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRIEDAEELF----EVMPVKPVIA- 267
Query: 429 YGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLR 466
M+ LG+ G + ++ SM D S W ++++
Sbjct: 268 CNAMISGLGQKGEIAKARRVFDSMKERNDAS-WQTVIK 304
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 50/259 (19%)
Query: 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286
S S N +V YF +A+KL E+ + +++ W LVSGY+K+ E DEAR++FD
Sbjct: 47 SISSWNSMVAGYFANLMPRDARKLFD--EMPDRNIISWNGLVSGYMKNGEIDEARKVFDL 104
Query: 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346
M ERN++SWT ++ G ++ +++A L
Sbjct: 105 MPERNVVSWTALVKGYVHN--------------------------------GKVDVAESL 132
Query: 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406
F ++ EKN WT ++ + G A L+ E D + +++ G V
Sbjct: 133 FWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY----EMIPDKDNIARTSMIHGLCKEGRV 188
Query: 407 DEG---YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS 463
DE +D +S++S + + MV G+ ++++ MP +VS W+S
Sbjct: 189 DEAREIFDEMSERSVIT--------WTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTS 239
Query: 464 LLRACRCHQNVKLAEHAFK 482
+L + ++ AE F+
Sbjct: 240 MLMGYVQNGRIEDAEELFE 258
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 106/252 (42%), Gaps = 29/252 (11%)
Query: 39 PVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ 98
P + ++ V S +S+ +++H+ L+ D +++ + + G+L ++ I +
Sbjct: 332 PTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDR 391
Query: 99 GDEPEIKIWNSIIENQLINGYPQEVFAIYLYL----------VTRTVLLNKC---GKLKE 145
+I +WNSII +G +E ++ + VT L+ C G ++E
Sbjct: 392 FPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEE 451
Query: 146 VCQLFDKLPNRDVISWNTMISCYTSM-------GMYREGLGLLSKMGAEGVSPDEVTMVS 198
++++ + + V + + Y M G + E + ++ M E PD S
Sbjct: 452 GLKIYESMES--VFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVE---PDAAVWGS 506
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK---IGEAQKLLGRYE 255
L+ A L++ + L E + SG+ + L +MY G+ + E +KL+
Sbjct: 507 LLGACRTHSQLDVAEFCAKKLIEIEPENSGTYI-LLSNMYASQGRWADVAELRKLMKTRL 565
Query: 256 IDEVDVVLWTTL 267
+ + WT +
Sbjct: 566 VRKSPGCSWTEV 577
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/553 (33%), Positives = 289/553 (52%), Gaps = 70/553 (12%)
Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
R+ W +I Y G + E + + M E ++P T +L+ A ++DL +G+
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171
Query: 216 HLFLEESTMKISGSLL----NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
H T ++ G N ++DMY KC I A+K+ E+ E DV+ WT L++ Y
Sbjct: 172 H----AQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFD--EMPERDVISWTELIAAY 225
Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAE----FKY---------------- 311
+ + A LF+ + +++++WT M++G Q+A+ +Y
Sbjct: 226 ARVGNMECAAELFESLPTKDMVAWTAMVTG-FAQNAKPQEALEYFDRMEKSGIRADEVTV 284
Query: 312 ----KSCASIGALYHGIWV-------------HVYIKKNQISI----DNIELAYDLFSEI 350
+CA +GA + HV I I + N+E A ++F +
Sbjct: 285 AGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
Query: 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEM-EETGTKPDQVTFIALLSACSHGGLVDEG 409
+ KNV+ ++S+I A G AQ+A+ LF M +T KP+ VTF+ L ACSH GLVD+G
Sbjct: 345 NNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQG 404
Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
+ + ++P HY CMVDLLGR G L+E+ I +M + P +W +LL ACR
Sbjct: 405 RQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACR 464
Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
H N ++AE A +HL E +P G ++LL+N+YA AG + R+R +++ GLKK
Sbjct: 465 IHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAV 524
Query: 530 S-LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQE---------------- 572
S ++++ G +HKF G++ +P S +I L E+ L G Q
Sbjct: 525 SWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRL 584
Query: 573 TSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFH 632
+QH E+LA+AF L++T+ +TI I+ NLR+C DCH FM++ S+V + I++RDN RFH
Sbjct: 585 ILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFH 644
Query: 633 RFQGGQCSCRDYW 645
F+ G CSC D+W
Sbjct: 645 HFRSGDCSCGDFW 657
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/370 (21%), Positives = 147/370 (39%), Gaps = 57/370 (15%)
Query: 37 VCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF----LVFTGDLGYA 92
+ PVS + ++C ++ + NL R Q Q F V+ G+
Sbjct: 145 ITPVSFTFSALLKACGTMKDL----------NLGR--QFHAQTFRLRGFCFVYVGNTMID 192
Query: 93 QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152
+ + + K+++ + E +I+ E+ A Y + G ++ +LF+
Sbjct: 193 MYVKCESIDCARKVFDEMPERDVISW--TELIAAYA----------RVGNMECAAELFES 240
Query: 153 LPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMG 212
LP +D+++W M++ + +E L +M G+ DEVT+ ISA +L +
Sbjct: 241 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300
Query: 213 KNLHLFLEESTMKISGSLL--NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270
++S S ++ + L+DMY KCG + EA + ++ +V +++++ G
Sbjct: 301 DRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF--MSMNNKNVFTYSSMILG 358
Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330
EA LF MV + E K + +GAL +
Sbjct: 359 LATHGRAQEALHLFHYMVTQT----------------EIKPNTVTFVGALMACSHSGLVD 402
Query: 331 KKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
+ Q+ + Y F ++ Y T ++ G Q+A++L M +P
Sbjct: 403 QGRQV----FDSMYQTFGVQPTRDHY--TCMVDLLGRTGRLQEALELIKTMS---VEPHG 453
Query: 391 VTFIALLSAC 400
+ ALL AC
Sbjct: 454 GVWGALLGAC 463
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 198/593 (33%), Positives = 305/593 (51%), Gaps = 62/593 (10%)
Query: 93 QQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL-FD 151
+ I+R G P +K + + ++ GY + L+T+ + L + L F
Sbjct: 13 EAIVRAG--PRVKQLQQVHAHLIVTGYGRS-----RSLLTKLITLACSARAIAYTHLLFL 65
Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
+P D +N++I + + + + +M + VSP T S+I + L L +
Sbjct: 66 SVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRI 125
Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
GK +H S + + LV Y KCG + A+++ R + E +V W +LVSG+
Sbjct: 126 GKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDR--MPEKSIVAWNSLVSGF 183
Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVY 329
++ DEA ++F +M E SG A F +CA GA+ G WVH Y
Sbjct: 184 EQNGLADEAIQVFYQMRE----------SGFEPDSATFVSLLSACAQTGAVSLGSWVHQY 233
Query: 330 IKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
I + ++ ++ A ++F ++ E NV WT++I+AY G+ Q+A
Sbjct: 234 IISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQA 293
Query: 375 IDLFLEMEE-TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
++LF +ME+ G P+ VTF+A+LSAC+H GLV+EG + ++ Y + P ++H+ CMV
Sbjct: 294 VELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMV 353
Query: 434 DLLGRAGHLEESANFI-----TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488
D+LGRAG L+E+ FI T P ++W+++L AC+ H+N L K L +
Sbjct: 354 DMLGRAGFLDEAYKFIHQLDATGKATAP--ALWTAMLGACKMHRNYDLGVEIAKRLIALE 411
Query: 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFN 548
P N G HV+L+NIYA +G+ D++S IR + L+KQ+GYS+IE + F+ GD +
Sbjct: 412 PDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESH 471
Query: 549 PHSEEIYLMLNEIEMTLQQQGLQETSLQ----------------HRERLAVAFGLISTSE 592
+ EIY L + ++ G S + H E+LAVAFGL+ T +
Sbjct: 472 QETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD 531
Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
I IV NLRIC DCHS K S V NR+I +RD RFH FQ G CSC DYW
Sbjct: 532 -VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 54/290 (18%)
Query: 35 ANVCPVSLDVIMVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
+NV P + V +SC+ + + +H H + + D + + F GD+
Sbjct: 101 SNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEG 160
Query: 92 AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYL----------------------- 128
A+Q+ + E I WNS++ NG E ++
Sbjct: 161 ARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQ 220
Query: 129 ------------YLVTR---------TVLLN---KCGKLKEVCQLFDKLPNRDVISWNTM 164
Y+++ T L+N +CG + + ++FDK+ +V +W M
Sbjct: 221 TGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAM 280
Query: 165 ISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223
IS Y + G ++ + L +KM + G P+ VT V+++SA +E G++++ + +S
Sbjct: 281 ISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSY 340
Query: 224 MKISGSLLNY-LVDMYFKCGKIGEAQKLLGRYEI--DEVDVVLWTTLVSG 270
I G + +VDM + G + EA K + + + LWT ++
Sbjct: 341 RLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGA 390
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 312 bits (800), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 182/571 (31%), Positives = 286/571 (50%), Gaps = 60/571 (10%)
Query: 132 TRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG--V 189
+ V L+ L Q+ D+ + + N+MI + + + ++ + G +
Sbjct: 45 VKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDL 104
Query: 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249
PD T+ L+ A T LR E G +H + L+ +Y + G + K
Sbjct: 105 KPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHK 164
Query: 250 LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309
+ I D V T +V+ + + AR+LF+ M ER+ I+W MISG Q E
Sbjct: 165 VFN--SIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYA-QVGES 221
Query: 310 K------------------------YKSCASIGALYHGIWVHVYIKKNQISI-------- 337
+ +C +GAL G W H YI++N+I I
Sbjct: 222 REALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTL 281
Query: 338 -------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
++E A ++F + EKNVY W+S + AM G +K ++LF M++ G P+
Sbjct: 282 VDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNA 341
Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
VTF+++L CS G VDEG + I+P+++HYGC+VDL RAG LE++ + I
Sbjct: 342 VTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQ 401
Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
MP+ P ++WSSLL A R ++N++L A K + E + N GA+VLL+NIYA + D+
Sbjct: 402 QMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDN 461
Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL 570
+S +R ++ G++KQ G S++E G VH+F GD +P +I + +I L+ G
Sbjct: 462 VSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGY 521
Query: 571 QETSLQ----------------HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
+ + H E+ A+AFG++S E IRIV NLR+CGDCH +
Sbjct: 522 KADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMM 581
Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
S+++NREI++RD RFH F+ G CSC +W
Sbjct: 582 ISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/189 (18%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 44 VIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD 100
+I V +C+ ++D+ HS++ + +++T + + GD+ A ++ +
Sbjct: 243 MISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGME 302
Query: 101 EPEIKIWNSIIENQLINGYPQEVFAIYLYL---------VTRTVLLNKC---GKLKEVCQ 148
E + W+S + +NG+ ++ ++ + VT +L C G + E +
Sbjct: 303 EKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQR 362
Query: 149 LFDKLPNRDVIS-----WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203
FD + N I + ++ Y G + + ++ +M + P SL+ A
Sbjct: 363 HFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQM---PMKPHAAVWSSLLHAS 419
Query: 204 TKLRDLEMG 212
++LE+G
Sbjct: 420 RMYKNLELG 428
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,568,242
Number of Sequences: 539616
Number of extensions: 9594531
Number of successful extensions: 29429
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 22320
Number of HSP's gapped (non-prelim): 2026
length of query: 645
length of database: 191,569,459
effective HSP length: 124
effective length of query: 521
effective length of database: 124,657,075
effective search space: 64946336075
effective search space used: 64946336075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)