Query 048812
Match_columns 645
No_of_seqs 713 out of 4604
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-118 2E-123 1023.4 67.6 606 19-643 169-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-112 9E-117 946.7 64.2 569 40-645 86-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 8.7E-70 1.9E-74 620.7 52.9 582 21-640 70-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 8.8E-59 1.9E-63 520.4 55.8 475 39-528 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.4E-58 5.2E-63 514.4 45.3 442 19-528 104-611 (697)
6 PLN03218 maturation of RBCL 1; 100.0 2.7E-57 5.9E-62 508.4 47.0 497 70-624 367-912 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-25 2.9E-30 261.3 49.3 461 52-519 411-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-25 5.7E-30 258.8 48.8 452 51-522 376-867 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.3E-28 2.7E-33 203.6 7.3 98 528-635 2-116 (116)
10 PRK11788 tetratricopeptide rep 99.9 4.8E-19 1E-23 185.5 33.2 306 163-529 40-355 (389)
11 PRK11447 cellulose synthase su 99.9 1.7E-17 3.7E-22 195.1 46.4 462 51-520 125-665 (1157)
12 KOG4626 O-linked N-acetylgluco 99.8 1E-18 2.2E-23 174.9 29.1 370 73-510 116-508 (966)
13 PRK11447 cellulose synthase su 99.8 9.9E-17 2.1E-21 188.7 46.0 447 52-520 161-739 (1157)
14 PRK11788 tetratricopeptide rep 99.8 3.4E-18 7.4E-23 179.0 29.7 282 141-486 49-346 (389)
15 KOG4626 O-linked N-acetylgluco 99.8 7.1E-17 1.5E-21 161.8 34.4 347 158-522 116-486 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-16 3.6E-21 175.4 41.0 383 77-521 131-571 (615)
17 PRK09782 bacteriophage N4 rece 99.8 1.1E-14 2.3E-19 164.3 48.1 474 35-522 105-707 (987)
18 PRK10049 pgaA outer membrane p 99.8 1.5E-15 3.3E-20 170.9 40.7 403 70-522 12-457 (765)
19 PRK15174 Vi polysaccharide exp 99.8 1.4E-15 3.1E-20 167.6 38.6 312 139-491 54-385 (656)
20 PRK09782 bacteriophage N4 rece 99.8 6E-15 1.3E-19 166.3 42.3 452 52-522 58-673 (987)
21 TIGR00990 3a0801s09 mitochondr 99.8 8.4E-15 1.8E-19 161.9 41.6 399 52-492 141-576 (615)
22 PRK15174 Vi polysaccharide exp 99.7 2E-14 4.2E-19 158.6 39.7 313 52-452 56-378 (656)
23 PRK14574 hmsH outer membrane p 99.7 3.1E-13 6.8E-18 149.5 47.3 415 52-522 48-514 (822)
24 PRK10049 pgaA outer membrane p 99.7 2.6E-14 5.7E-19 160.9 36.4 355 139-522 27-423 (765)
25 KOG4422 Uncharacterized conser 99.7 1.1E-12 2.3E-17 126.9 35.5 410 52-523 129-592 (625)
26 PRK14574 hmsH outer membrane p 99.7 5.8E-13 1.3E-17 147.4 38.6 388 107-521 38-479 (822)
27 KOG2002 TPR-containing nuclear 99.6 3.7E-12 8.1E-17 135.1 31.9 431 53-520 251-744 (1018)
28 KOG2003 TPR repeat-containing 99.5 5.3E-12 1.1E-16 122.7 27.1 420 75-507 203-709 (840)
29 KOG2002 TPR-containing nuclear 99.5 1.6E-10 3.4E-15 123.0 37.0 448 52-523 178-677 (1018)
30 KOG2076 RNA polymerase III tra 99.5 2.4E-11 5.2E-16 128.3 30.6 336 134-531 147-522 (895)
31 PF13429 TPR_15: Tetratricopep 99.5 3E-13 6.6E-18 134.3 13.4 158 358-518 113-274 (280)
32 KOG0495 HAT repeat protein [RN 99.5 5.1E-09 1.1E-13 106.9 42.7 459 33-536 371-893 (913)
33 KOG4422 Uncharacterized conser 99.5 1.2E-10 2.5E-15 113.0 29.5 355 86-488 192-591 (625)
34 KOG1126 DNA-binding cell divis 99.5 1.2E-11 2.7E-16 126.7 23.2 282 172-522 333-621 (638)
35 KOG1155 Anaphase-promoting com 99.4 2.2E-09 4.8E-14 105.5 34.8 286 166-518 235-533 (559)
36 TIGR00540 hemY_coli hemY prote 99.4 4.2E-10 9.1E-15 117.8 32.0 292 170-486 96-398 (409)
37 KOG4318 Bicoid mRNA stability 99.4 2E-10 4.4E-15 120.8 28.3 474 21-525 9-598 (1088)
38 KOG2076 RNA polymerase III tra 99.4 8.6E-09 1.9E-13 109.4 39.5 427 52-508 153-721 (895)
39 PRK10747 putative protoheme IX 99.4 6.2E-10 1.3E-14 115.9 31.2 286 171-518 97-387 (398)
40 KOG1126 DNA-binding cell divis 99.4 7.1E-11 1.5E-15 121.1 21.5 183 353-568 419-607 (638)
41 KOG0547 Translocase of outer m 99.4 1.5E-09 3.2E-14 107.3 29.3 386 80-519 122-564 (606)
42 PRK10747 putative protoheme IX 99.4 1.3E-09 2.7E-14 113.6 31.1 280 139-488 96-391 (398)
43 KOG1915 Cell cycle control pro 99.4 4.6E-09 9.9E-14 103.4 31.9 377 140-531 86-510 (677)
44 PF13041 PPR_2: PPR repeat fam 99.3 2.2E-12 4.8E-17 90.4 6.2 50 156-205 1-50 (50)
45 PF13041 PPR_2: PPR repeat fam 99.3 4.2E-12 9.1E-17 88.9 6.9 50 353-402 1-50 (50)
46 KOG0495 HAT repeat protein [RN 99.3 7E-08 1.5E-12 98.8 39.5 398 92-532 365-791 (913)
47 KOG1915 Cell cycle control pro 99.3 3.9E-08 8.4E-13 97.0 34.1 179 73-253 73-269 (677)
48 KOG1173 Anaphase-promoting com 99.3 1.6E-08 3.5E-13 102.1 31.9 427 54-519 32-516 (611)
49 PF13429 TPR_15: Tetratricopep 99.3 1.4E-11 2.9E-16 122.5 10.1 253 78-417 13-275 (280)
50 TIGR02521 type_IV_pilW type IV 99.3 2E-09 4.2E-14 103.6 24.3 200 260-520 30-231 (234)
51 TIGR00540 hemY_coli hemY prote 99.2 2.6E-09 5.6E-14 111.9 25.9 252 205-518 96-361 (409)
52 COG2956 Predicted N-acetylgluc 99.2 1.5E-08 3.2E-13 95.4 26.2 310 171-541 48-367 (389)
53 KOG1155 Anaphase-promoting com 99.2 3E-08 6.4E-13 97.7 29.2 161 355-520 330-494 (559)
54 COG3071 HemY Uncharacterized e 99.2 7.7E-08 1.7E-12 93.5 30.6 296 163-486 87-389 (400)
55 KOG4318 Bicoid mRNA stability 99.2 3.2E-09 6.9E-14 111.9 22.5 242 179-443 11-288 (1088)
56 KOG2003 TPR repeat-containing 99.2 8.3E-08 1.8E-12 94.0 29.4 394 109-520 206-688 (840)
57 PRK12370 invasion protein regu 99.1 1.1E-08 2.4E-13 111.3 25.5 262 193-522 256-536 (553)
58 TIGR02521 type_IV_pilW type IV 99.1 1.5E-08 3.2E-13 97.4 23.2 201 226-489 29-234 (234)
59 KOG2047 mRNA splicing factor [ 99.1 5.3E-06 1.1E-10 85.3 41.6 271 229-507 388-709 (835)
60 KOG2376 Signal recognition par 99.1 5.8E-07 1.3E-11 91.5 33.1 433 81-530 20-524 (652)
61 KOG1840 Kinesin light chain [C 99.1 2E-08 4.4E-13 104.4 23.6 241 227-519 198-477 (508)
62 KOG0547 Translocase of outer m 99.1 9.2E-08 2E-12 94.9 26.1 341 161-522 118-492 (606)
63 COG2956 Predicted N-acetylgluc 99.1 1.7E-07 3.6E-12 88.5 25.1 280 86-452 48-344 (389)
64 PRK12370 invasion protein regu 99.0 1.4E-07 3E-12 102.8 27.1 261 156-488 254-536 (553)
65 KOG1129 TPR repeat-containing 99.0 5.3E-08 1.1E-12 91.7 18.5 231 227-522 222-459 (478)
66 KOG4162 Predicted calmodulin-b 99.0 2.5E-06 5.5E-11 89.6 32.1 424 69-522 319-784 (799)
67 COG3071 HemY Uncharacterized e 99.0 1.2E-06 2.7E-11 85.3 27.7 165 352-519 184-388 (400)
68 KOG1840 Kinesin light chain [C 99.0 2.9E-07 6.3E-12 95.9 25.0 237 194-486 200-478 (508)
69 PRK11189 lipoprotein NlpI; Pro 98.9 5.5E-07 1.2E-11 89.8 26.1 231 207-504 40-283 (296)
70 KOG3785 Uncharacterized conser 98.9 3.3E-06 7.1E-11 80.7 28.8 200 265-491 289-494 (557)
71 KOG1174 Anaphase-promoting com 98.9 1.4E-05 3.1E-10 78.1 33.5 378 78-492 102-505 (564)
72 PRK11189 lipoprotein NlpI; Pro 98.9 2E-07 4.3E-12 93.0 21.5 193 261-522 64-266 (296)
73 KOG1174 Anaphase-promoting com 98.9 6.9E-06 1.5E-10 80.2 29.6 284 224-567 228-520 (564)
74 KOG1129 TPR repeat-containing 98.9 1.5E-07 3.2E-12 88.7 16.9 231 197-491 227-462 (478)
75 KOG1173 Anaphase-promoting com 98.8 2.2E-06 4.7E-11 87.1 25.8 273 163-499 249-530 (611)
76 KOG3616 Selective LIM binding 98.8 4.4E-06 9.5E-11 86.8 27.7 362 79-522 621-1025(1636)
77 KOG1125 TPR repeat-containing 98.8 8.2E-08 1.8E-12 97.5 14.8 222 237-520 294-526 (579)
78 COG3063 PilF Tfp pilus assembl 98.8 5.4E-07 1.2E-11 81.4 18.1 161 357-522 37-203 (250)
79 KOG1156 N-terminal acetyltrans 98.8 3.4E-05 7.4E-10 79.8 32.7 406 52-523 21-470 (700)
80 KOG2047 mRNA splicing factor [ 98.8 8E-05 1.7E-09 77.0 34.6 193 325-520 348-578 (835)
81 PF04733 Coatomer_E: Coatomer 98.8 3.3E-07 7.3E-12 90.0 16.8 147 365-520 112-264 (290)
82 KOG0985 Vesicle coat protein c 98.7 6.6E-05 1.4E-09 81.1 33.0 329 114-561 1058-1400(1666)
83 cd05804 StaR_like StaR_like; a 98.7 7.8E-05 1.7E-09 76.9 32.4 303 159-522 7-337 (355)
84 PF12569 NARP1: NMDA receptor- 98.7 2E-05 4.3E-10 83.3 27.8 68 168-238 14-82 (517)
85 KOG1127 TPR repeat-containing 98.7 9.7E-05 2.1E-09 80.0 32.1 443 56-518 474-993 (1238)
86 COG3063 PilF Tfp pilus assembl 98.6 1E-05 2.2E-10 73.4 20.9 194 161-419 38-236 (250)
87 KOG3616 Selective LIM binding 98.6 1.1E-05 2.5E-10 83.8 23.8 231 237-531 715-947 (1636)
88 KOG4340 Uncharacterized conser 98.6 1.8E-05 3.9E-10 74.1 22.7 290 193-517 10-335 (459)
89 PRK04841 transcriptional regul 98.6 0.00024 5.2E-09 83.2 38.3 409 55-522 292-761 (903)
90 KOG1156 N-terminal acetyltrans 98.6 0.00027 5.8E-09 73.5 31.2 348 137-523 51-436 (700)
91 KOG3785 Uncharacterized conser 98.5 0.00036 7.8E-09 67.2 29.4 183 335-522 296-491 (557)
92 KOG0985 Vesicle coat protein c 98.5 0.0003 6.5E-09 76.3 31.0 157 339-518 1090-1246(1666)
93 PF12569 NARP1: NMDA receptor- 98.5 0.00088 1.9E-08 71.1 34.4 45 472-516 471-515 (517)
94 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 4.9E-12 58.3 4.6 32 421-452 2-33 (34)
95 PF04733 Coatomer_E: Coatomer 98.5 8.8E-06 1.9E-10 80.1 17.6 222 160-418 37-264 (290)
96 KOG0624 dsRNA-activated protei 98.5 0.00054 1.2E-08 65.8 28.3 165 78-286 43-214 (504)
97 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.2E-12 58.6 3.7 34 67-100 1-34 (34)
98 TIGR03302 OM_YfiO outer membra 98.4 1.8E-05 3.9E-10 76.3 19.0 167 353-521 31-232 (235)
99 KOG0548 Molecular co-chaperone 98.4 0.00045 9.7E-09 70.4 28.5 373 135-522 10-456 (539)
100 KOG4162 Predicted calmodulin-b 98.4 0.0024 5.3E-08 67.9 34.0 398 45-493 330-789 (799)
101 cd05804 StaR_like StaR_like; a 98.4 0.00037 8.1E-09 71.9 28.6 115 171-288 93-213 (355)
102 KOG1070 rRNA processing protei 98.4 2.2E-05 4.8E-10 87.5 19.7 166 355-524 1497-1666(1710)
103 KOG1128 Uncharacterized conser 98.4 1.7E-05 3.6E-10 83.2 17.2 220 224-521 394-616 (777)
104 KOG2376 Signal recognition par 98.3 0.0037 8E-08 64.6 32.6 422 52-484 26-517 (652)
105 PRK10370 formate-dependent nit 98.3 5.4E-05 1.2E-09 70.3 18.1 146 362-522 23-174 (198)
106 PLN02789 farnesyltranstransfer 98.3 0.00023 5.1E-09 71.0 23.7 137 353-519 140-300 (320)
107 PRK15359 type III secretion sy 98.3 2.4E-05 5.3E-10 68.6 14.7 120 377-503 15-137 (144)
108 KOG3617 WD40 and TPR repeat-co 98.3 0.01 2.3E-07 63.5 34.9 216 52-287 742-993 (1416)
109 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.8E-11 55.7 4.3 35 159-193 1-35 (35)
110 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.6E-11 55.2 4.5 34 356-389 1-34 (35)
111 PRK15359 type III secretion sy 98.2 1.9E-05 4E-10 69.4 12.6 106 412-522 15-122 (144)
112 KOG1127 TPR repeat-containing 98.2 0.002 4.4E-08 70.2 29.2 439 54-518 578-1135(1238)
113 PRK15179 Vi polysaccharide bio 98.2 0.00012 2.5E-09 80.6 20.7 172 320-497 45-227 (694)
114 KOG3617 WD40 and TPR repeat-co 98.2 0.00034 7.4E-09 74.3 22.2 301 135-514 736-1057(1416)
115 TIGR03302 OM_YfiO outer membra 98.2 0.00024 5.3E-09 68.4 19.9 59 431-489 171-234 (235)
116 KOG4340 Uncharacterized conser 98.2 0.0018 3.9E-08 61.1 24.0 380 53-520 25-442 (459)
117 KOG1125 TPR repeat-containing 98.1 0.00014 3E-09 74.6 17.2 187 83-291 295-496 (579)
118 PRK04841 transcriptional regul 98.1 0.019 4.2E-07 67.3 37.9 358 105-521 318-720 (903)
119 PF13812 PPR_3: Pentatricopept 98.1 5.6E-06 1.2E-10 52.3 4.5 33 356-388 2-34 (34)
120 PF13812 PPR_3: Pentatricopept 98.1 5.1E-06 1.1E-10 52.5 4.3 34 158-191 1-34 (34)
121 COG4783 Putative Zn-dependent 98.1 0.00051 1.1E-08 69.4 20.1 186 328-519 241-435 (484)
122 KOG1070 rRNA processing protei 98.1 0.00089 1.9E-08 75.4 23.6 163 356-519 1531-1698(1710)
123 COG5010 TadD Flp pilus assembl 98.1 0.00014 3E-09 67.6 14.8 135 386-522 62-198 (257)
124 PRK15363 pathogenicity island 98.1 8E-05 1.7E-09 64.5 12.5 95 426-520 35-131 (157)
125 PRK10370 formate-dependent nit 98.1 0.00016 3.4E-09 67.2 15.2 128 140-269 52-185 (198)
126 KOG1128 Uncharacterized conser 98.0 0.00022 4.7E-09 75.1 16.3 64 354-418 552-615 (777)
127 TIGR02552 LcrH_SycD type III s 98.0 0.00011 2.4E-09 63.9 11.9 100 422-521 12-114 (135)
128 PRK14720 transcript cleavage f 98.0 0.0015 3.2E-08 72.9 23.1 47 457-503 222-268 (906)
129 COG5010 TadD Flp pilus assembl 98.0 0.0008 1.7E-08 62.6 17.3 155 359-516 70-226 (257)
130 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00017 3.8E-09 73.4 13.6 120 395-519 174-295 (395)
131 PRK15179 Vi polysaccharide bio 97.9 0.0013 2.8E-08 72.6 21.1 120 328-452 90-214 (694)
132 PF01535 PPR: PPR repeat; Int 97.9 1.5E-05 3.2E-10 49.1 3.6 31 159-189 1-31 (31)
133 PLN02789 farnesyltranstransfer 97.9 0.0049 1.1E-07 61.6 23.0 129 160-291 39-172 (320)
134 PF01535 PPR: PPR repeat; Int 97.8 1.9E-05 4.1E-10 48.6 3.4 31 356-386 1-31 (31)
135 PRK14720 transcript cleavage f 97.8 0.0037 8.1E-08 69.8 22.8 181 163-401 88-268 (906)
136 COG4783 Putative Zn-dependent 97.8 0.002 4.3E-08 65.3 18.1 141 360-522 311-455 (484)
137 KOG0624 dsRNA-activated protei 97.8 0.012 2.5E-07 56.9 22.2 243 335-605 49-314 (504)
138 KOG0548 Molecular co-chaperone 97.8 0.07 1.5E-06 55.0 31.3 365 112-504 10-472 (539)
139 KOG1914 mRNA cleavage and poly 97.7 0.076 1.6E-06 54.7 33.0 128 101-254 17-163 (656)
140 TIGR02552 LcrH_SycD type III s 97.7 0.0011 2.4E-08 57.5 14.1 112 377-493 5-120 (135)
141 KOG3081 Vesicle coat complex C 97.7 0.013 2.8E-07 54.8 21.1 148 363-520 116-270 (299)
142 cd00189 TPR Tetratricopeptide 97.7 0.00039 8.6E-09 55.3 10.4 92 429-520 3-96 (100)
143 PF09976 TPR_21: Tetratricopep 97.7 0.0017 3.7E-08 57.1 14.1 127 355-483 12-143 (145)
144 PF09976 TPR_21: Tetratricopep 97.6 0.0023 5E-08 56.3 14.9 124 160-286 14-143 (145)
145 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00095 2.1E-08 56.2 12.0 99 396-494 8-112 (119)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0011 2.3E-08 67.7 13.7 122 162-288 173-295 (395)
147 PF12895 Apc3: Anaphase-promot 97.6 8.2E-05 1.8E-09 58.5 4.5 77 440-517 3-83 (84)
148 KOG3060 Uncharacterized conser 97.6 0.0053 1.2E-07 56.9 16.4 179 339-521 27-220 (289)
149 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.001 2.2E-08 56.0 11.2 96 427-522 3-106 (119)
150 PLN03088 SGT1, suppressor of 97.6 0.0012 2.7E-08 67.4 13.7 95 399-496 11-108 (356)
151 PF13414 TPR_11: TPR repeat; P 97.5 0.00026 5.7E-09 53.1 6.3 64 457-520 2-66 (69)
152 PRK10153 DNA-binding transcrip 97.5 0.005 1.1E-07 65.9 17.8 65 457-522 419-483 (517)
153 PF04840 Vps16_C: Vps16, C-ter 97.5 0.079 1.7E-06 52.9 24.4 113 390-519 177-289 (319)
154 KOG1914 mRNA cleavage and poly 97.4 0.19 4.1E-06 51.9 27.4 406 39-482 18-534 (656)
155 KOG2053 Mitochondrial inherita 97.4 0.28 6.1E-06 53.8 35.9 67 460-526 438-507 (932)
156 PRK02603 photosystem I assembl 97.4 0.0057 1.2E-07 55.5 14.5 131 354-508 34-167 (172)
157 KOG2041 WD40 repeat protein [G 97.4 0.25 5.5E-06 52.4 27.3 201 70-293 689-910 (1189)
158 PF13432 TPR_16: Tetratricopep 97.4 0.00052 1.1E-08 50.8 6.0 58 464-521 3-60 (65)
159 KOG3081 Vesicle coat complex C 97.4 0.07 1.5E-06 50.1 20.6 172 214-418 94-270 (299)
160 PRK02603 photosystem I assembl 97.3 0.0026 5.6E-08 57.8 11.6 82 426-507 35-121 (172)
161 PF14559 TPR_19: Tetratricopep 97.3 0.00076 1.7E-08 50.4 6.0 52 469-520 2-53 (68)
162 PF07079 DUF1347: Protein of u 97.3 0.25 5.4E-06 50.0 24.6 72 446-518 444-521 (549)
163 CHL00033 ycf3 photosystem I as 97.2 0.0033 7.2E-08 56.9 11.1 93 426-518 35-139 (168)
164 PF14938 SNAP: Soluble NSF att 97.2 0.11 2.5E-06 51.3 22.5 98 356-453 156-264 (282)
165 cd00189 TPR Tetratricopeptide 97.2 0.0036 7.8E-08 49.5 9.9 89 358-450 3-92 (100)
166 PF06239 ECSIT: Evolutionarily 97.2 0.0042 9.1E-08 56.6 10.8 101 340-441 30-153 (228)
167 KOG2053 Mitochondrial inherita 97.2 0.31 6.8E-06 53.4 26.3 126 169-299 20-151 (932)
168 PF05843 Suf: Suppressor of fo 97.2 0.018 3.8E-07 56.8 16.2 133 356-491 2-140 (280)
169 KOG3060 Uncharacterized conser 97.2 0.045 9.7E-07 51.0 17.2 164 335-504 63-234 (289)
170 KOG0553 TPR repeat-containing 97.2 0.0028 6.1E-08 60.3 9.7 92 399-493 90-184 (304)
171 PF13432 TPR_16: Tetratricopep 97.1 0.0013 2.9E-08 48.5 6.2 61 432-492 3-65 (65)
172 PRK10153 DNA-binding transcrip 97.1 0.011 2.3E-07 63.4 15.1 143 350-494 332-489 (517)
173 PLN03088 SGT1, suppressor of 97.1 0.0085 1.8E-07 61.3 14.0 104 361-468 8-113 (356)
174 PF12895 Apc3: Anaphase-promot 97.1 0.0015 3.3E-08 51.2 6.7 80 368-451 2-83 (84)
175 KOG0553 TPR repeat-containing 97.1 0.0056 1.2E-07 58.3 11.2 99 363-465 89-189 (304)
176 CHL00033 ycf3 photosystem I as 97.1 0.037 8.1E-07 50.0 16.2 80 355-437 35-117 (168)
177 PF08579 RPM2: Mitochondrial r 97.1 0.0091 2E-07 48.2 10.3 80 161-240 28-116 (120)
178 KOG1130 Predicted G-alpha GTPa 97.0 0.0095 2.1E-07 58.9 12.3 128 392-519 197-342 (639)
179 PRK15331 chaperone protein Sic 97.0 0.0068 1.5E-07 52.9 10.0 90 431-520 42-133 (165)
180 PF13371 TPR_9: Tetratricopept 97.0 0.0022 4.9E-08 48.6 6.1 57 466-522 3-59 (73)
181 PF14559 TPR_19: Tetratricopep 96.9 0.0016 3.4E-08 48.6 4.8 53 439-491 4-58 (68)
182 PF08579 RPM2: Mitochondrial r 96.9 0.021 4.5E-07 46.2 10.7 81 357-438 27-116 (120)
183 PF10037 MRP-S27: Mitochondria 96.8 0.012 2.6E-07 60.5 11.7 121 385-505 61-186 (429)
184 PRK15363 pathogenicity island 96.8 0.035 7.6E-07 48.3 12.7 102 149-253 25-128 (157)
185 PF13431 TPR_17: Tetratricopep 96.8 0.00093 2E-08 41.8 2.2 33 481-513 2-34 (34)
186 COG4700 Uncharacterized protei 96.8 0.24 5.2E-06 44.0 17.4 130 386-519 85-220 (251)
187 KOG0550 Molecular chaperone (D 96.8 0.058 1.2E-06 53.7 15.2 154 363-522 177-351 (486)
188 PF05843 Suf: Suppressor of fo 96.7 0.029 6.3E-07 55.3 13.4 139 159-299 2-147 (280)
189 COG4700 Uncharacterized protei 96.7 0.044 9.5E-07 48.4 12.6 110 413-522 76-190 (251)
190 COG4235 Cytochrome c biogenesi 96.7 0.015 3.3E-07 55.8 10.7 102 423-524 152-259 (287)
191 PF12688 TPR_5: Tetratrico pep 96.7 0.028 6.1E-07 47.0 11.1 91 361-451 7-100 (120)
192 PF14938 SNAP: Soluble NSF att 96.7 0.092 2E-06 52.0 16.8 119 358-491 97-229 (282)
193 COG3898 Uncharacterized membra 96.7 0.76 1.6E-05 45.7 27.4 297 159-529 83-398 (531)
194 PRK10866 outer membrane biogen 96.6 0.18 4E-06 48.4 17.5 159 358-519 35-239 (243)
195 PF10037 MRP-S27: Mitochondria 96.6 0.06 1.3E-06 55.5 14.7 118 353-471 64-186 (429)
196 PF06239 ECSIT: Evolutionarily 96.5 0.02 4.4E-07 52.2 9.5 100 144-243 31-153 (228)
197 PF13414 TPR_11: TPR repeat; P 96.5 0.0074 1.6E-07 45.1 5.8 64 426-489 3-69 (69)
198 KOG2796 Uncharacterized conser 96.5 0.26 5.7E-06 46.2 16.6 224 106-395 71-324 (366)
199 PF13428 TPR_14: Tetratricopep 96.5 0.0055 1.2E-07 41.0 4.3 42 459-500 2-43 (44)
200 PRK10803 tol-pal system protei 96.4 0.023 5E-07 55.0 10.2 93 428-520 145-245 (263)
201 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.014 3E-07 59.6 8.7 62 426-487 75-141 (453)
202 PF12688 TPR_5: Tetratrico pep 96.4 0.044 9.5E-07 45.9 10.3 83 435-517 10-100 (120)
203 KOG2041 WD40 repeat protein [G 96.2 2.2 4.8E-05 45.7 26.1 181 89-291 679-882 (1189)
204 PF09205 DUF1955: Domain of un 96.2 0.15 3.3E-06 42.4 11.9 139 367-524 14-152 (161)
205 KOG1538 Uncharacterized conser 96.2 0.31 6.8E-06 51.3 16.8 88 389-486 746-845 (1081)
206 PF13371 TPR_9: Tetratricopept 96.1 0.025 5.4E-07 42.7 6.8 63 434-496 3-67 (73)
207 PF04840 Vps16_C: Vps16, C-ter 96.0 1.9 4.2E-05 43.1 25.8 62 235-300 184-245 (319)
208 PF13281 DUF4071: Domain of un 96.0 0.99 2.2E-05 45.7 19.3 127 362-491 186-338 (374)
209 PF12921 ATP13: Mitochondrial 96.0 0.088 1.9E-06 44.5 10.2 96 355-471 2-101 (126)
210 KOG0543 FKBP-type peptidyl-pro 96.0 0.099 2.1E-06 52.3 11.8 85 458-568 257-341 (397)
211 KOG1538 Uncharacterized conser 96.0 0.18 3.8E-06 53.1 14.0 191 64-288 626-844 (1081)
212 PRK10803 tol-pal system protei 95.9 0.19 4.1E-06 48.8 13.7 93 401-493 154-252 (263)
213 PF12921 ATP13: Mitochondrial 95.9 0.075 1.6E-06 45.0 9.5 99 389-505 1-101 (126)
214 PF03704 BTAD: Bacterial trans 95.9 0.035 7.6E-07 48.8 7.9 61 460-520 64-124 (146)
215 KOG3941 Intermediate in Toll s 95.9 0.077 1.7E-06 50.1 10.0 103 340-443 50-175 (406)
216 KOG2796 Uncharacterized conser 95.9 0.45 9.8E-06 44.7 14.8 137 356-492 178-320 (366)
217 PRK10866 outer membrane biogen 95.9 1.8 4E-05 41.6 20.2 56 361-416 181-238 (243)
218 PF04053 Coatomer_WDAD: Coatom 95.8 0.17 3.6E-06 53.1 13.6 130 107-253 298-427 (443)
219 COG4235 Cytochrome c biogenesi 95.8 0.11 2.5E-06 49.9 11.1 112 157-270 155-269 (287)
220 PF13525 YfiO: Outer membrane 95.7 0.97 2.1E-05 42.1 17.3 141 360-520 10-169 (203)
221 KOG2280 Vacuolar assembly/sort 95.5 4.8 0.0001 43.8 24.7 118 385-518 679-796 (829)
222 PF13424 TPR_12: Tetratricopep 95.4 0.026 5.7E-07 43.3 4.7 23 495-517 49-71 (78)
223 PF13424 TPR_12: Tetratricopep 95.4 0.028 6.1E-07 43.1 4.7 62 426-487 5-75 (78)
224 KOG1130 Predicted G-alpha GTPa 95.4 1.2 2.6E-05 44.6 16.5 234 166-415 25-300 (639)
225 PF03704 BTAD: Bacterial trans 95.2 0.1 2.2E-06 45.7 8.4 114 115-232 17-140 (146)
226 KOG1585 Protein required for f 95.2 2.1 4.6E-05 39.9 16.5 143 356-515 92-250 (308)
227 PF13525 YfiO: Outer membrane 94.9 2.7 5.8E-05 39.2 17.3 137 358-512 45-198 (203)
228 KOG0550 Molecular chaperone (D 94.6 5.7 0.00012 40.2 20.7 255 85-418 61-349 (486)
229 PLN03098 LPA1 LOW PSII ACCUMUL 94.4 0.27 5.9E-06 50.4 9.8 61 389-452 74-138 (453)
230 KOG4555 TPR repeat-containing 94.3 0.49 1.1E-05 39.4 9.2 88 435-522 52-145 (175)
231 COG1729 Uncharacterized protei 94.2 0.37 8E-06 45.9 9.6 81 438-520 153-243 (262)
232 KOG3941 Intermediate in Toll s 94.0 0.37 8.1E-06 45.7 9.1 102 143-244 50-174 (406)
233 PRK11906 transcriptional regul 93.8 1.2 2.6E-05 46.0 13.0 61 457-517 337-397 (458)
234 PF00515 TPR_1: Tetratricopept 93.6 0.13 2.9E-06 31.8 3.9 32 459-490 2-33 (34)
235 KOG0543 FKBP-type peptidyl-pro 93.5 1.3 2.9E-05 44.5 12.5 138 362-521 215-355 (397)
236 smart00299 CLH Clathrin heavy 93.4 4.7 0.0001 34.8 15.4 130 354-503 6-136 (140)
237 PRK11906 transcriptional regul 93.4 6.3 0.00014 40.9 17.3 157 356-516 252-431 (458)
238 PF07719 TPR_2: Tetratricopept 93.4 0.21 4.5E-06 30.8 4.6 33 459-491 2-34 (34)
239 PF04053 Coatomer_WDAD: Coatom 93.3 1.5 3.3E-05 46.1 13.2 133 364-522 270-403 (443)
240 smart00299 CLH Clathrin heavy 93.2 2.6 5.6E-05 36.5 12.8 78 49-130 18-95 (140)
241 PF13512 TPR_18: Tetratricopep 93.2 2.2 4.9E-05 36.6 11.7 58 436-493 20-82 (142)
242 COG4105 ComL DNA uptake lipopr 92.8 8.9 0.00019 36.4 18.4 142 356-521 35-196 (254)
243 KOG2280 Vacuolar assembly/sort 92.7 18 0.00039 39.6 24.8 103 410-518 668-770 (829)
244 COG1729 Uncharacterized protei 92.7 1.3 2.7E-05 42.4 10.5 103 358-492 145-249 (262)
245 PF13512 TPR_18: Tetratricopep 92.6 2.9 6.3E-05 35.9 11.5 115 361-492 16-133 (142)
246 COG3118 Thioredoxin domain-con 92.6 11 0.00023 36.7 17.3 155 362-518 141-299 (304)
247 PF04184 ST7: ST7 protein; In 92.5 3 6.4E-05 43.3 13.4 150 367-531 180-334 (539)
248 COG5107 RNA14 Pre-mRNA 3'-end 92.5 14 0.00031 37.9 30.1 135 353-491 395-535 (660)
249 COG0457 NrfG FOG: TPR repeat [ 92.0 10 0.00022 35.0 26.7 160 357-520 97-264 (291)
250 COG3898 Uncharacterized membra 91.7 16 0.00035 36.8 27.1 276 140-486 97-391 (531)
251 COG3629 DnrI DNA-binding trans 91.7 0.94 2E-05 43.9 8.5 61 460-520 155-215 (280)
252 KOG1920 IkappaB kinase complex 91.6 31 0.00068 40.0 22.3 82 396-484 971-1052(1265)
253 KOG2610 Uncharacterized conser 91.4 4.3 9.2E-05 39.8 12.4 113 368-483 116-234 (491)
254 COG4785 NlpI Lipoprotein NlpI, 91.4 1.9 4E-05 39.6 9.4 153 364-522 74-267 (297)
255 PRK15331 chaperone protein Sic 91.1 1.4 3.1E-05 38.7 8.3 87 165-253 44-130 (165)
256 PF13281 DUF4071: Domain of un 90.9 20 0.00044 36.5 18.3 162 360-522 146-335 (374)
257 COG3118 Thioredoxin domain-con 90.8 8.7 0.00019 37.3 13.8 121 398-522 142-266 (304)
258 KOG0276 Vesicle coat complex C 90.8 1.5 3.2E-05 46.3 9.3 149 85-253 598-746 (794)
259 PF04184 ST7: ST7 protein; In 90.8 10 0.00022 39.6 15.0 99 394-492 263-380 (539)
260 PF10300 DUF3808: Protein of u 90.8 15 0.00032 39.2 17.4 160 358-520 191-375 (468)
261 PF09205 DUF1955: Domain of un 90.5 9.7 0.00021 32.1 13.1 65 425-489 85-151 (161)
262 PF10300 DUF3808: Protein of u 90.2 2.3 5E-05 45.3 10.7 144 375-522 177-335 (468)
263 PF00637 Clathrin: Region in C 90.1 0.11 2.4E-06 45.4 0.6 117 52-173 21-140 (143)
264 KOG4555 TPR repeat-containing 90.1 2.8 6E-05 35.1 8.5 88 401-491 54-148 (175)
265 KOG2610 Uncharacterized conser 89.8 3.7 8E-05 40.2 10.4 115 402-518 115-235 (491)
266 TIGR02508 type_III_yscG type I 89.7 4.6 0.0001 32.0 9.0 83 108-198 25-107 (115)
267 KOG4234 TPR repeat-containing 89.6 2.4 5.3E-05 38.3 8.5 88 435-522 104-198 (271)
268 PF13181 TPR_8: Tetratricopept 89.3 0.64 1.4E-05 28.6 3.6 31 460-490 3-33 (34)
269 KOG1920 IkappaB kinase complex 89.3 36 0.00078 39.6 18.9 153 113-287 860-1025(1265)
270 KOG1258 mRNA processing protei 89.1 35 0.00077 36.5 24.6 347 157-513 44-421 (577)
271 PF02259 FAT: FAT domain; Int 89.0 28 0.00061 35.4 21.4 33 472-504 272-304 (352)
272 PF13176 TPR_7: Tetratricopept 88.9 0.68 1.5E-05 29.2 3.5 27 460-486 1-27 (36)
273 PF08631 SPO22: Meiosis protei 88.3 27 0.00059 34.3 22.7 59 230-288 86-148 (278)
274 PRK11619 lytic murein transgly 88.1 48 0.0011 36.9 30.0 54 225-278 126-180 (644)
275 PF13176 TPR_7: Tetratricopept 88.0 1.2 2.6E-05 28.0 4.2 26 357-382 1-26 (36)
276 PF08631 SPO22: Meiosis protei 88.0 14 0.0003 36.4 13.9 162 366-528 4-193 (278)
277 COG3947 Response regulator con 87.8 28 0.0006 33.8 15.6 60 461-520 282-341 (361)
278 COG4105 ComL DNA uptake lipopr 87.7 26 0.00057 33.4 20.4 167 335-520 45-232 (254)
279 TIGR02561 HrpB1_HrpK type III 87.2 14 0.0003 32.0 11.1 95 240-382 22-120 (153)
280 PF09613 HrpB1_HrpK: Bacterial 87.0 2.7 6E-05 36.8 7.1 48 471-518 23-70 (160)
281 PF13428 TPR_14: Tetratricopep 86.9 0.88 1.9E-05 30.2 3.2 22 232-253 5-26 (44)
282 COG5107 RNA14 Pre-mRNA 3'-end 86.6 42 0.00092 34.6 28.5 127 392-520 399-530 (660)
283 PF06552 TOM20_plant: Plant sp 86.6 9.3 0.0002 34.2 10.1 45 474-525 96-140 (186)
284 KOG1941 Acetylcholine receptor 86.5 13 0.00027 37.1 11.8 162 356-517 84-271 (518)
285 PF10602 RPN7: 26S proteasome 86.3 18 0.0004 32.7 12.5 95 356-452 37-139 (177)
286 COG0457 NrfG FOG: TPR repeat [ 86.3 27 0.00058 32.0 28.4 198 228-490 59-268 (291)
287 PF09613 HrpB1_HrpK: Bacterial 86.0 24 0.00051 31.1 13.5 88 400-490 20-109 (160)
288 PF10602 RPN7: 26S proteasome 85.9 7.5 0.00016 35.2 9.7 64 159-222 37-102 (177)
289 PF13170 DUF4003: Protein of u 85.6 39 0.00084 33.6 15.3 134 371-506 78-230 (297)
290 COG4649 Uncharacterized protei 85.4 22 0.00048 31.7 11.6 21 233-253 172-192 (221)
291 KOG3364 Membrane protein invol 85.3 4.3 9.4E-05 34.3 7.0 89 457-571 31-124 (149)
292 TIGR02561 HrpB1_HrpK type III 85.2 3.2 6.9E-05 35.8 6.4 52 471-522 23-74 (153)
293 PF04097 Nic96: Nup93/Nic96; 84.9 49 0.0011 36.8 17.3 31 426-456 500-535 (613)
294 PF00515 TPR_1: Tetratricopept 84.4 2.3 5E-05 26.0 4.1 28 356-383 2-29 (34)
295 PF13170 DUF4003: Protein of u 84.2 38 0.00082 33.6 14.5 26 371-396 198-223 (297)
296 PF07079 DUF1347: Protein of u 83.9 57 0.0012 33.8 29.5 44 71-114 126-177 (549)
297 PF14853 Fis1_TPR_C: Fis1 C-te 83.8 7.1 0.00015 27.1 6.6 50 495-570 4-53 (53)
298 KOG0890 Protein kinase of the 83.6 1.4E+02 0.003 38.0 25.7 47 165-213 1456-1503(2382)
299 KOG1464 COP9 signalosome, subu 83.5 12 0.00026 35.7 9.8 187 333-519 36-259 (440)
300 PF07035 Mic1: Colon cancer-as 83.5 32 0.0007 30.6 12.7 133 61-222 17-149 (167)
301 PF13374 TPR_10: Tetratricopep 83.3 2.6 5.7E-05 27.1 4.3 28 459-486 3-30 (42)
302 COG3629 DnrI DNA-binding trans 82.6 12 0.00027 36.4 10.0 79 355-434 153-235 (280)
303 PF13431 TPR_17: Tetratricopep 82.5 2.4 5.2E-05 26.3 3.5 24 225-248 10-33 (34)
304 PF00637 Clathrin: Region in C 82.2 1.3 2.9E-05 38.4 3.2 85 199-288 13-97 (143)
305 KOG2114 Vacuolar assembly/sort 81.0 65 0.0014 36.1 15.5 114 361-484 403-516 (933)
306 PF11207 DUF2989: Protein of u 80.3 16 0.00036 33.4 9.4 79 168-248 117-198 (203)
307 PRK09687 putative lyase; Provi 80.1 63 0.0014 31.8 24.7 58 353-417 204-261 (280)
308 KOG1941 Acetylcholine receptor 79.0 28 0.00061 34.8 11.0 112 340-451 145-271 (518)
309 PF13374 TPR_10: Tetratricopep 78.4 5 0.00011 25.7 4.4 28 356-383 3-30 (42)
310 PF02284 COX5A: Cytochrome c o 78.3 14 0.0003 29.6 7.2 49 451-499 38-86 (108)
311 PF13174 TPR_6: Tetratricopept 78.1 3.7 8E-05 24.7 3.4 27 464-490 6-32 (33)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 77.7 14 0.0003 29.3 6.9 47 452-498 36-82 (103)
313 PF02259 FAT: FAT domain; Int 77.6 50 0.0011 33.5 13.7 67 456-522 144-214 (352)
314 PF07719 TPR_2: Tetratricopept 77.0 5.8 0.00013 24.0 4.1 27 357-383 3-29 (34)
315 KOG1585 Protein required for f 77.0 68 0.0015 30.4 14.8 48 470-517 122-175 (308)
316 KOG0292 Vesicle coat complex C 76.9 1.4E+02 0.003 33.9 20.9 155 110-288 626-780 (1202)
317 PF07721 TPR_4: Tetratricopept 76.0 3.5 7.6E-05 23.6 2.6 24 493-516 2-25 (26)
318 cd00923 Cyt_c_Oxidase_Va Cytoc 75.9 21 0.00046 28.3 7.5 61 372-434 24-84 (103)
319 PRK10941 hypothetical protein; 75.5 25 0.00054 34.2 9.9 62 460-521 183-244 (269)
320 PF02284 COX5A: Cytochrome c o 75.4 19 0.00042 28.8 7.2 60 373-434 28-87 (108)
321 KOG2114 Vacuolar assembly/sort 75.4 1.5E+02 0.0032 33.5 23.6 96 59-155 418-518 (933)
322 smart00028 TPR Tetratricopepti 75.0 5.9 0.00013 22.8 3.8 31 460-490 3-33 (34)
323 PF11207 DUF2989: Protein of u 74.8 17 0.00037 33.3 7.9 76 436-512 117-198 (203)
324 COG2976 Uncharacterized protei 74.5 69 0.0015 29.3 14.3 129 357-491 56-192 (207)
325 PF10366 Vps39_1: Vacuolar sor 74.4 34 0.00073 28.0 8.9 41 141-186 27-67 (108)
326 PF14853 Fis1_TPR_C: Fis1 C-te 74.4 8.7 0.00019 26.7 4.6 30 464-493 7-36 (53)
327 KOG0276 Vesicle coat complex C 74.0 59 0.0013 35.0 12.4 146 339-518 601-747 (794)
328 KOG4648 Uncharacterized conser 72.1 14 0.00031 36.4 7.1 47 168-216 107-154 (536)
329 PF13929 mRNA_stabil: mRNA sta 71.9 44 0.00095 32.6 10.3 106 368-473 141-253 (292)
330 KOG4648 Uncharacterized conser 71.9 8.1 0.00017 38.0 5.4 110 398-514 105-217 (536)
331 PF04910 Tcf25: Transcriptiona 71.8 53 0.0012 33.6 11.7 95 426-520 40-167 (360)
332 KOG1258 mRNA processing protei 70.8 1.6E+02 0.0035 31.8 33.2 186 260-508 296-491 (577)
333 KOG1550 Extracellular protein 68.6 64 0.0014 35.3 12.3 152 365-524 259-429 (552)
334 PF09477 Type_III_YscG: Bacter 68.1 56 0.0012 26.5 8.3 72 110-188 28-99 (116)
335 PF13762 MNE1: Mitochondrial s 68.0 81 0.0018 27.4 11.0 51 156-206 77-128 (145)
336 PF13181 TPR_8: Tetratricopept 67.9 11 0.00023 22.8 3.8 28 493-520 2-29 (34)
337 COG4785 NlpI Lipoprotein NlpI, 66.9 1.1E+02 0.0024 28.5 15.4 63 158-223 99-163 (297)
338 COG4455 ImpE Protein of avirul 66.6 18 0.0004 33.4 6.2 64 429-492 4-69 (273)
339 KOG4570 Uncharacterized conser 66.6 20 0.00043 35.1 6.7 53 171-223 113-165 (418)
340 PRK15180 Vi polysaccharide bio 66.4 81 0.0017 32.9 11.2 72 377-452 312-383 (831)
341 KOG2396 HAT (Half-A-TPR) repea 66.4 91 0.002 32.8 11.7 42 389-430 104-145 (568)
342 COG4649 Uncharacterized protei 66.1 1E+02 0.0022 27.7 15.9 121 365-486 68-195 (221)
343 KOG0686 COP9 signalosome, subu 65.1 1.7E+02 0.0037 30.0 15.9 157 357-520 152-332 (466)
344 PF13174 TPR_6: Tetratricopept 64.5 9.1 0.0002 22.9 2.9 28 494-521 2-29 (33)
345 PF09670 Cas_Cas02710: CRISPR- 62.9 1.6E+02 0.0034 30.5 13.2 122 364-486 140-269 (379)
346 KOG1586 Protein required for f 62.9 1.3E+02 0.0029 28.4 10.9 62 430-491 117-187 (288)
347 PRK15180 Vi polysaccharide bio 62.4 53 0.0012 34.2 9.1 121 342-467 308-434 (831)
348 PF10579 Rapsyn_N: Rapsyn N-te 62.2 16 0.00035 27.7 4.2 45 470-514 18-65 (80)
349 PF07035 Mic1: Colon cancer-as 62.0 1.2E+02 0.0026 27.1 14.5 32 179-210 15-46 (167)
350 KOG2396 HAT (Half-A-TPR) repea 62.0 2.2E+02 0.0047 30.2 25.9 102 387-491 456-564 (568)
351 smart00386 HAT HAT (Half-A-TPR 61.7 16 0.00036 21.5 3.7 29 472-500 1-29 (33)
352 KOG3807 Predicted membrane pro 61.4 91 0.002 30.8 10.1 49 401-449 286-334 (556)
353 PF06552 TOM20_plant: Plant sp 61.3 51 0.0011 29.7 7.8 48 356-403 29-82 (186)
354 PF13934 ELYS: Nuclear pore co 60.2 1.6E+02 0.0034 27.9 12.3 106 358-472 79-186 (226)
355 TIGR02508 type_III_yscG type I 59.8 90 0.002 25.1 9.7 80 209-293 21-100 (115)
356 KOG2066 Vacuolar assembly/sort 59.3 3E+02 0.0065 30.9 26.2 53 80-132 363-420 (846)
357 KOG4234 TPR repeat-containing 57.7 1.6E+02 0.0034 27.2 10.7 31 466-496 176-206 (271)
358 PF08311 Mad3_BUB1_I: Mad3/BUB 57.5 74 0.0016 26.9 8.1 42 476-517 81-124 (126)
359 PF13929 mRNA_stabil: mRNA sta 57.3 1.7E+02 0.0036 28.7 11.1 124 161-287 134-264 (292)
360 PF07163 Pex26: Pex26 protein; 55.7 1.4E+02 0.003 29.1 10.1 88 362-452 90-184 (309)
361 PF09477 Type_III_YscG: Bacter 54.6 1.2E+02 0.0025 24.8 10.6 83 207-294 20-102 (116)
362 PF10579 Rapsyn_N: Rapsyn N-te 54.3 35 0.00076 25.9 4.8 46 402-447 18-64 (80)
363 COG3947 Response regulator con 54.2 2.2E+02 0.0048 27.9 11.6 41 210-252 150-190 (361)
364 PF14561 TPR_20: Tetratricopep 53.9 31 0.00068 27.1 4.9 40 481-520 11-50 (90)
365 KOG1308 Hsp70-interacting prot 52.7 9.2 0.0002 37.8 2.0 85 440-524 128-214 (377)
366 KOG1586 Protein required for f 52.3 2.1E+02 0.0046 27.1 17.9 60 435-494 163-231 (288)
367 PF10366 Vps39_1: Vacuolar sor 51.9 67 0.0015 26.3 6.7 28 262-289 40-67 (108)
368 PRK13800 putative oxidoreducta 51.8 4.6E+02 0.01 30.8 24.0 247 190-486 632-880 (897)
369 PF11768 DUF3312: Protein of u 51.5 2.2E+02 0.0048 30.6 11.8 26 263-288 410-435 (545)
370 PF11846 DUF3366: Domain of un 51.1 59 0.0013 29.8 7.2 36 454-489 140-175 (193)
371 PF11663 Toxin_YhaV: Toxin wit 50.9 16 0.00035 30.9 2.9 32 367-400 107-138 (140)
372 KOG4642 Chaperone-dependent E3 50.8 42 0.00092 31.6 5.8 52 467-518 53-104 (284)
373 PF11846 DUF3366: Domain of un 50.8 52 0.0011 30.2 6.7 51 402-452 120-170 (193)
374 TIGR03504 FimV_Cterm FimV C-te 50.4 32 0.0007 22.8 3.7 20 201-220 7-26 (44)
375 KOG0292 Vesicle coat complex C 49.6 69 0.0015 36.1 8.0 98 57-156 623-727 (1202)
376 PF14669 Asp_Glu_race_2: Putat 49.5 2.1E+02 0.0045 26.2 13.5 97 147-253 96-206 (233)
377 TIGR03504 FimV_Cterm FimV C-te 48.5 42 0.00091 22.3 4.0 25 361-385 5-29 (44)
378 PF13934 ELYS: Nuclear pore co 47.3 2E+02 0.0044 27.2 10.2 114 338-459 92-205 (226)
379 PRK09687 putative lyase; Provi 47.1 2.9E+02 0.0063 27.1 26.8 125 354-490 141-266 (280)
380 KOG4642 Chaperone-dependent E3 46.0 2.4E+02 0.0053 26.8 9.8 28 453-480 112-139 (284)
381 KOG4570 Uncharacterized conser 45.9 1.3E+02 0.0027 29.8 8.3 103 347-452 56-161 (418)
382 KOG0545 Aryl-hydrocarbon recep 44.6 1.5E+02 0.0032 28.3 8.2 56 465-520 237-292 (329)
383 KOG4077 Cytochrome c oxidase, 44.5 1.1E+02 0.0024 25.7 6.7 48 451-498 77-124 (149)
384 COG2976 Uncharacterized protei 44.4 2.6E+02 0.0056 25.7 12.2 89 433-522 96-189 (207)
385 PF13762 MNE1: Mitochondrial s 44.1 2.2E+02 0.0047 24.8 9.0 51 353-403 77-128 (145)
386 PRK10564 maltose regulon perip 43.9 45 0.00098 32.7 5.2 43 356-398 258-300 (303)
387 PHA02875 ankyrin repeat protei 43.9 3.7E+02 0.008 28.0 12.8 197 52-287 13-225 (413)
388 PF11838 ERAP1_C: ERAP1-like C 43.3 3.5E+02 0.0075 26.9 21.9 99 403-501 143-245 (324)
389 PF07720 TPR_3: Tetratricopept 42.7 80 0.0017 19.8 4.5 30 461-490 4-35 (36)
390 PF11663 Toxin_YhaV: Toxin wit 42.7 28 0.00061 29.5 3.1 31 171-203 108-138 (140)
391 KOG2422 Uncharacterized conser 42.7 4E+02 0.0087 28.9 11.9 54 466-519 350-405 (665)
392 PF07163 Pex26: Pex26 protein; 42.3 2.2E+02 0.0048 27.7 9.3 86 165-252 90-182 (309)
393 KOG4507 Uncharacterized conser 42.0 76 0.0016 34.0 6.7 99 402-503 619-721 (886)
394 PF14863 Alkyl_sulf_dimr: Alky 42.0 1.3E+02 0.0027 26.1 7.1 63 443-508 58-120 (141)
395 COG4455 ImpE Protein of avirul 41.9 3E+02 0.0065 25.8 11.9 75 357-435 3-81 (273)
396 KOG4279 Serine/threonine prote 41.8 2.6E+02 0.0056 31.3 10.6 143 44-203 166-333 (1226)
397 PRK13342 recombination factor 41.5 3.7E+02 0.0079 28.2 12.1 45 159-203 228-275 (413)
398 KOG3824 Huntingtin interacting 41.5 49 0.0011 32.3 4.9 47 469-515 127-173 (472)
399 PHA02875 ankyrin repeat protei 41.3 4.3E+02 0.0094 27.5 16.8 166 59-260 49-229 (413)
400 PRK10941 hypothetical protein; 41.2 2.2E+02 0.0047 27.8 9.5 66 430-495 185-252 (269)
401 KOG2063 Vacuolar assembly/sort 41.2 4.5E+02 0.0098 30.4 13.0 156 70-240 475-638 (877)
402 PF14561 TPR_20: Tetratricopep 40.7 1.8E+02 0.0039 22.8 8.3 62 457-518 21-85 (90)
403 PF04190 DUF410: Protein of un 40.6 3.5E+02 0.0076 26.2 16.3 51 226-278 88-138 (260)
404 PRK10564 maltose regulon perip 40.5 45 0.00098 32.7 4.6 44 156-199 254-298 (303)
405 PF11768 DUF3312: Protein of u 40.3 1.4E+02 0.003 32.1 8.4 114 159-292 409-525 (545)
406 PF12862 Apc5: Anaphase-promot 39.8 83 0.0018 24.8 5.4 53 468-520 8-69 (94)
407 KOG0376 Serine-threonine phosp 39.7 49 0.0011 34.5 4.9 53 466-518 46-98 (476)
408 PF11848 DUF3368: Domain of un 39.3 1.2E+02 0.0025 20.5 5.2 34 365-398 12-45 (48)
409 cd08819 CARD_MDA5_2 Caspase ac 39.0 1.2E+02 0.0027 23.6 5.8 39 139-178 48-86 (88)
410 PF09868 DUF2095: Uncharacteri 38.5 1.1E+02 0.0023 25.1 5.5 52 32-87 58-109 (128)
411 KOG2063 Vacuolar assembly/sort 38.3 7E+02 0.015 29.0 22.8 117 263-401 506-637 (877)
412 smart00777 Mad3_BUB1_I Mad3/BU 37.8 2.2E+02 0.0049 24.0 7.8 41 476-516 81-123 (125)
413 PRK11509 hydrogenase-1 operon 37.7 96 0.0021 26.4 5.6 83 536-621 35-126 (132)
414 PF11848 DUF3368: Domain of un 37.7 1E+02 0.0023 20.8 4.8 32 169-200 13-44 (48)
415 PF12862 Apc5: Anaphase-promot 37.7 1.8E+02 0.004 22.8 7.1 24 464-487 47-70 (94)
416 cd08819 CARD_MDA5_2 Caspase ac 36.7 2E+02 0.0043 22.5 6.6 65 57-123 21-85 (88)
417 KOG1498 26S proteasome regulat 36.5 4.9E+02 0.011 26.7 15.1 101 430-534 135-254 (439)
418 KOG4077 Cytochrome c oxidase, 36.3 2.1E+02 0.0046 24.1 7.1 71 373-454 67-137 (149)
419 cd00280 TRFH Telomeric Repeat 35.9 2E+02 0.0042 26.2 7.3 35 433-467 118-152 (200)
420 PRK11639 zinc uptake transcrip 35.7 1.2E+02 0.0025 27.2 6.3 37 406-443 41-77 (169)
421 COG1747 Uncharacterized N-term 35.4 5.9E+02 0.013 27.3 18.8 132 356-494 100-241 (711)
422 PF09986 DUF2225: Uncharacteri 35.0 2E+02 0.0043 27.0 7.9 56 467-522 127-195 (214)
423 KOG4521 Nuclear pore complex, 34.9 8.6E+02 0.019 29.1 14.8 127 356-490 984-1135(1480)
424 KOG2471 TPR repeat-containing 34.7 3.5E+02 0.0076 28.7 9.9 290 52-400 31-379 (696)
425 PF14689 SPOB_a: Sensor_kinase 34.7 66 0.0014 23.2 3.7 26 358-383 26-51 (62)
426 cd08326 CARD_CASP9 Caspase act 34.3 1.3E+02 0.0028 23.3 5.5 62 57-122 18-79 (84)
427 PF06957 COPI_C: Coatomer (COP 34.1 98 0.0021 32.3 6.1 45 447-491 287-333 (422)
428 PF10345 Cohesin_load: Cohesin 34.0 7E+02 0.015 27.8 32.5 154 366-519 415-604 (608)
429 COG5108 RPO41 Mitochondrial DN 33.7 2.5E+02 0.0054 30.9 8.9 72 360-435 33-112 (1117)
430 COG4976 Predicted methyltransf 33.3 59 0.0013 30.5 3.9 56 436-491 5-62 (287)
431 KOG2659 LisH motif-containing 33.1 3.7E+02 0.008 25.3 9.1 91 358-451 29-128 (228)
432 COG0735 Fur Fe2+/Zn2+ uptake r 32.6 2.1E+02 0.0047 24.8 7.3 51 355-405 20-70 (145)
433 KOG0551 Hsp90 co-chaperone CNS 31.3 2.4E+02 0.0052 28.3 7.8 92 427-518 82-179 (390)
434 KOG0403 Neoplastic transformat 31.3 1.7E+02 0.0037 30.4 7.0 75 232-306 513-588 (645)
435 PF14689 SPOB_a: Sensor_kinase 31.1 67 0.0014 23.2 3.2 24 163-186 28-51 (62)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 30.9 3.2E+02 0.007 23.0 9.6 42 373-414 81-123 (126)
437 KOG0403 Neoplastic transformat 30.3 6.6E+02 0.014 26.4 19.8 58 429-486 512-571 (645)
438 TIGR02710 CRISPR-associated pr 29.7 6.4E+02 0.014 26.0 12.7 35 363-397 138-172 (380)
439 PRK12798 chemotaxis protein; R 28.7 6.9E+02 0.015 26.1 21.3 133 355-489 147-288 (421)
440 PF02847 MA3: MA3 domain; Int 28.6 1.2E+02 0.0025 24.8 4.8 64 162-227 6-71 (113)
441 COG4976 Predicted methyltransf 27.9 3.3E+02 0.0071 25.8 7.7 56 468-523 5-60 (287)
442 PF14669 Asp_Glu_race_2: Putat 27.8 4.8E+02 0.01 24.0 13.8 58 395-452 137-207 (233)
443 KOG0991 Replication factor C, 27.7 2.1E+02 0.0046 27.1 6.5 57 147-205 228-284 (333)
444 KOG1350 F0F1-type ATP synthase 27.7 31 0.00066 33.7 1.2 71 560-637 237-307 (521)
445 PF10255 Paf67: RNA polymerase 27.6 3.4E+02 0.0075 28.2 8.8 69 262-382 123-191 (404)
446 KOG2062 26S proteasome regulat 27.6 9.3E+02 0.02 27.2 20.7 33 187-222 207-239 (929)
447 PF12968 DUF3856: Domain of Un 27.2 3.8E+02 0.0082 22.5 9.3 58 461-518 58-126 (144)
448 cd00280 TRFH Telomeric Repeat 27.1 3E+02 0.0066 25.0 7.1 30 464-494 117-146 (200)
449 PF08424 NRDE-2: NRDE-2, neces 26.9 6.6E+02 0.014 25.2 13.5 139 425-574 18-173 (321)
450 KOG4567 GTPase-activating prot 26.9 6.4E+02 0.014 25.1 10.3 73 375-453 263-345 (370)
451 KOG4507 Uncharacterized conser 26.6 2.4E+02 0.0052 30.5 7.3 135 386-522 567-706 (886)
452 smart00544 MA3 Domain in DAP-5 26.5 3.5E+02 0.0076 21.9 7.7 72 232-303 6-79 (113)
453 cd08332 CARD_CASP2 Caspase act 26.5 2.3E+02 0.005 22.2 5.8 60 57-120 22-81 (90)
454 PF04097 Nic96: Nup93/Nic96; 25.9 9.6E+02 0.021 26.8 20.7 216 233-454 116-355 (613)
455 KOG2034 Vacuolar sorting prote 25.7 1.1E+03 0.023 27.3 22.7 165 112-288 366-557 (911)
456 PRK14135 recX recombination re 25.7 6.1E+02 0.013 24.5 19.6 132 324-458 75-208 (263)
457 PF09454 Vps23_core: Vps23 cor 25.1 2.2E+02 0.0048 20.8 5.0 50 351-401 4-53 (65)
458 KOG1464 COP9 signalosome, subu 24.8 6.5E+02 0.014 24.4 16.6 47 242-288 41-92 (440)
459 PHA03100 ankyrin repeat protei 24.8 8.5E+02 0.018 25.8 14.0 43 59-101 49-98 (480)
460 PF11525 CopK: Copper resistan 24.3 33 0.00071 25.0 0.6 22 621-642 8-29 (73)
461 COG4003 Uncharacterized protei 24.2 2.2E+02 0.0047 21.8 4.8 41 35-79 31-71 (98)
462 PF03745 DUF309: Domain of unk 24.1 2.3E+02 0.005 20.4 4.9 36 168-203 9-44 (62)
463 PF11817 Foie-gras_1: Foie gra 23.6 4.7E+02 0.01 25.1 8.6 75 339-413 160-241 (247)
464 COG5191 Uncharacterized conser 23.5 1.7E+02 0.0037 28.9 5.3 73 425-497 106-181 (435)
465 COG0735 Fur Fe2+/Zn2+ uptake r 22.8 3.1E+02 0.0068 23.8 6.5 64 180-244 8-71 (145)
466 cd07153 Fur_like Ferric uptake 22.6 1.8E+02 0.004 23.7 5.0 48 360-407 5-52 (116)
467 smart00544 MA3 Domain in DAP-5 22.4 4.2E+02 0.0092 21.4 8.9 60 162-223 6-67 (113)
468 COG2178 Predicted RNA-binding 22.4 2.8E+02 0.0062 25.4 6.1 29 159-187 67-98 (204)
469 KOG2066 Vacuolar assembly/sort 22.2 1.2E+03 0.026 26.6 21.2 21 361-381 511-531 (846)
470 PF04034 DUF367: Domain of unk 22.2 4.9E+02 0.011 22.0 7.7 58 426-483 66-124 (127)
471 PF10255 Paf67: RNA polymerase 22.1 3.5E+02 0.0076 28.2 7.6 59 230-288 124-191 (404)
472 PF12926 MOZART2: Mitotic-spin 22.1 3.9E+02 0.0084 20.9 6.7 60 40-100 9-70 (88)
473 cd08326 CARD_CASP9 Caspase act 21.7 1.9E+02 0.0041 22.4 4.4 39 139-177 42-80 (84)
474 KOG1524 WD40 repeat-containing 21.5 4.4E+02 0.0096 28.2 8.0 89 426-517 573-669 (737)
475 KOG4279 Serine/threonine prote 21.1 4.3E+02 0.0092 29.7 8.1 28 603-630 489-516 (1226)
476 PF15161 Neuropep_like: Neurop 21.0 35 0.00075 23.6 0.1 15 601-616 12-26 (65)
477 COG5108 RPO41 Mitochondrial DN 20.8 5.5E+02 0.012 28.4 8.7 93 109-221 33-131 (1117)
478 PF01475 FUR: Ferric uptake re 20.6 1.6E+02 0.0035 24.4 4.2 49 358-406 10-58 (120)
479 KOG1550 Extracellular protein 20.6 1.1E+03 0.025 25.7 21.7 76 174-253 228-318 (552)
480 PF12926 MOZART2: Mitotic-spin 20.5 4.2E+02 0.0091 20.7 6.7 40 214-253 29-68 (88)
481 COG4259 Uncharacterized protei 20.5 2.8E+02 0.0061 22.2 5.0 29 489-517 69-97 (121)
482 PRK11639 zinc uptake transcrip 20.2 3.3E+02 0.0072 24.3 6.3 59 185-244 18-76 (169)
483 PRK14700 recombination factor 20.1 8E+02 0.017 24.3 9.2 69 156-224 121-197 (300)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.6e-119 Score=1023.38 Aligned_cols=606 Identities=34% Similarity=0.611 Sum_probs=588.6
Q ss_pred hhccCCchhHHhhhhccccCCChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHH
Q 048812 19 LVRLGLVPKMRISRKFANVCPVSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95 (645)
Q Consensus 19 ~~~~~~~~~m~~~~~~~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 95 (645)
-.++.+|..|... |+.||.+||+.++++| +++..+.++|..+++.|+.||+.++|+||++|+++|++++|.++
T Consensus 169 ~~A~~~f~~M~~~----g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 169 DEALCLYHRMLWA----GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred HHHHHHHHHHHHc----CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 3457778888876 9999999999999998 67899999999999999999999999999999999999999999
Q ss_pred HhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------------------------------------
Q 048812 96 IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT----------------------------------------- 134 (645)
Q Consensus 96 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------------------------- 134 (645)
|++|++||+++||+||.+|++.|++++|+++|++|...+
T Consensus 245 f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 999999999999999999999999999999999997721
Q ss_pred ------chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 135 ------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 135 ------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++ +.++|+++||+||.+|+++|+.++|+++|++|.
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~--m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN--IPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh--CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 778999999999999999999999999999997
Q ss_pred ---cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC---------------cHHHHHHHHhhc
Q 048812 289 ---ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEI 350 (645)
Q Consensus 289 ---~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~---------------~~~~A~~~f~~~ 350 (645)
.||.+||+++| .+|+..|.++.|+++|..+.+.|+..+ ++++|.++|+.+
T Consensus 483 ~~~~pd~~t~~~lL------------~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 483 LTLKPNSVTLIAAL------------SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred hCCCCCHhHHHHHH------------HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 79999999999 889999999999999999999998765 899999999999
Q ss_pred CcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 048812 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430 (645)
Q Consensus 351 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 430 (645)
.+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|++|.+++|+.|+..+|+
T Consensus 551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
+|+++|++.|++++|.+++++|+++||..+|++|+++|..+|+.+.|+.+.+++++++|+++..|+.|+++|++.|+|++
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc--------------hhh-h
Q 048812 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ--------------ETS-L 575 (645)
Q Consensus 511 a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~--------------~~~-~ 575 (645)
|.++++.|+++|++|+||+|||++++++|.|.+||++||+.++||..|++|..+|++.||+ ++. +
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~ 789 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFC 789 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 234 8
Q ss_pred hhhHHHHHHhhhccCCCCCeEEEEccccccCCcchhHHHhhhccCeeEEEecCCccccccCccccCCC
Q 048812 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643 (645)
Q Consensus 576 ~~se~la~~~~l~~~~~~~~~~~~~n~~~c~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~~g~csc~~ 643 (645)
+||||||+|||||++|+|.||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||||
T Consensus 790 ~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 790 GHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-112 Score=946.71 Aligned_cols=569 Identities=32% Similarity=0.569 Sum_probs=538.2
Q ss_pred ChhhHHHHHhhc---CCHHHHHHHHHHHHHhC-CCCChhhhhhHHHHHHhcCChHHHHHHHhhCC----CCCcccHHHHH
Q 048812 40 VSLDVIMVERSC---SSIDEFERIHSHLITTN-LMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD----EPEIKIWNSII 111 (645)
Q Consensus 40 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li 111 (645)
+..+++.++..+ +++.+|.+++..|.+.+ +.||..+|+.++.+|++.++++.|.+++..|. .||..+||.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 444666666553 67777888888777654 66778888888888888888888888877764 57777888888
Q ss_pred HHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 048812 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191 (645)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p 191 (645)
.+| +++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 166 ~~y-----------------------~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 166 LMH-----------------------VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHH-----------------------hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 777 678899999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHH
Q 048812 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271 (645)
Q Consensus 192 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~ 271 (645)
|..||+.++.+|+..|+.+.+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++ +..+|+++||+||.+|
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~--m~~~~~vt~n~li~~y 300 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG--MPEKTTVAWNSMLAGY 300 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh--CCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 7789999999999999
Q ss_pred HhcCCHHHHHHHHHhcc----cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC---------
Q 048812 272 VKSNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--------- 338 (645)
Q Consensus 272 ~~~g~~~~A~~~~~~m~----~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~--------- 338 (645)
++.|+.++|+++|++|. .||..||++++ .+|+..|.++.|+++|..+.+.|+..+
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll------------~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI------------RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH------------HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 99999999999999996 78999999999 778888999999999999999998766
Q ss_pred ------cHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048812 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412 (645)
Q Consensus 339 ------~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 412 (645)
++++|.++|+.|.+||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
|+.|.+++|+.|+..+|++||++|++.|++++|.+++++|+++||..+|++|+.+|+.+|+++.|+.+++++++++|++.
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc-
Q 048812 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ- 571 (645)
Q Consensus 493 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~- 571 (645)
.+|+.|+++|++.|+|++|.++++.|+++|++|.||+|||++++.+|.|.+||..||+.++|+..|.+|..+|++.||+
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------hhh-hhhhHHHHHHhhhccCCCCCeEEEEccccccCCcchhHHHhhhccCeeEEEecCCccccccC
Q 048812 572 --------------ETS-LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636 (645)
Q Consensus 572 --------------~~~-~~~se~la~~~~l~~~~~~~~~~~~~n~~~c~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~~ 636 (645)
+.. ++||||||+|||||++|||.||||+||||+|+|||+|+|+||++++|+|||||.+|||||+|
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~ 688 (697)
T PLN03081 609 EENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKL 688 (697)
T ss_pred CcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCC
Confidence 234 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 048812 637 GQCSCRDYW 645 (645)
Q Consensus 637 g~csc~~~~ 645 (645)
|+|||||||
T Consensus 689 g~csc~d~w 697 (697)
T PLN03081 689 GKCSCGDYW 697 (697)
T ss_pred CcccccccC
Confidence 999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.7e-70 Score=620.66 Aligned_cols=582 Identities=25% Similarity=0.353 Sum_probs=506.4
Q ss_pred ccCCchhHHhhhhccccCCChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHh
Q 048812 21 RLGLVPKMRISRKFANVCPVSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97 (645)
Q Consensus 21 ~~~~~~~m~~~~~~~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~ 97 (645)
++.+|+.|... |+.|+..+|..++++| +.+..|.++|+.+.+.|..+++.++|+|+++|+++|+++.|.++|+
T Consensus 70 A~~l~~~m~~~----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~ 145 (857)
T PLN03077 70 ALKLLESMQEL----RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG 145 (857)
T ss_pred HHHHHHHHHhc----CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHh
Confidence 45566666665 8899999999999998 6799999999999999999999999999999999999999999999
Q ss_pred hCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-------------------------------------------
Q 048812 98 QGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT------------------------------------------- 134 (645)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------------------------------- 134 (645)
+|++||+++||++|.+|++.|++++|+++|++|...+
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 9999999999999999999999999999999997511
Q ss_pred ----chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChH
Q 048812 135 ----VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210 (645)
Q Consensus 135 ----~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (645)
.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc--
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV-- 288 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 288 (645)
.|.++|..+.+.|+.||..+||+||++|+++|++++|.++|++ +..||+++||+||.+|++.|++++|+++|++|.
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~--m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR--METKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh--CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 778999999999999999999999999999996
Q ss_pred --cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC---------------cHHHHHHHHhhcC
Q 048812 289 --ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351 (645)
Q Consensus 289 --~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~---------------~~~~A~~~f~~~~ 351 (645)
.||..||++++ .+|+..|.++.|.++|..+.+.|+..+ ++++|.++|++|.
T Consensus 384 g~~Pd~~t~~~ll------------~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 384 NVSPDEITIASVL------------SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred CCCCCceeHHHHH------------HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 68999999999 788888999999999999999998765 8999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048812 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+.+|.+|++.|.++.|.+++..+. +.|+.|+..++++
T Consensus 452 ~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~na 529 (857)
T PLN03077 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNA 529 (857)
T ss_pred CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechH
Confidence 99999999999999999999999999999986 599999999999999999999999999999999 6899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHcCCchH
Q 048812 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
||++|+++|++++|.++|+++ .||..+|+++|.+|.++|+.++|.++|++|.+.+ ..|..+|..++.+|++.|++++
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 999999999999999999999 7999999999999999999999999999999854 2356899999999999999999
Q ss_pred HHHHHHHHH-hCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH----------------HcCcchh
Q 048812 511 MSRIRMKLR-DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ----------------QQGLQET 573 (645)
Q Consensus 511 a~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~----------------~~g~~~~ 573 (645)
|.++|+.|+ +.|+.|+...-.. .+......++.++++. ++++|. ..|..+.
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G~~~eA~~----~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAGKLTEAYN----FINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCCCHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 999999998 6787765421110 1111223455666663 333342 1111111
Q ss_pred hhhhhHHHH-HHhhhccCCCCCeEEEEccccccCCcchhHHHhhhccCeeEEEe-------cCCccccccCcccc
Q 048812 574 SLQHRERLA-VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR-------DNGRFHRFQGGQCS 640 (645)
Q Consensus 574 ~~~~se~la-~~~~l~~~~~~~~~~~~~n~~~c~~~~~~~~~~s~~~~~~i~~r-------d~~~~h~~~~g~cs 640 (645)
.|+.+ ..+.+.+..++..+.+.+-....|+..++.++...|..+.+-.. -.+..|-|.-|--|
T Consensus 676 ----~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 676 ----GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred ----HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 11111 22445555455444344445678999999999988877743211 13567888666544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.8e-59 Score=520.38 Aligned_cols=475 Identities=16% Similarity=0.214 Sum_probs=429.4
Q ss_pred CChhhHHHHHhhc---CCHHHHHHHHHHHHHhCC-CCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHH
Q 048812 39 PVSLDVIMVERSC---SSIDEFERIHSHLITTNL-MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQ 114 (645)
Q Consensus 39 p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 114 (645)
++...|..++..+ |++++|.++++.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+||.+|.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4444555555544 899999999999999996 578888999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHhhcC------------chhhccCChHHHHHHHccCC----CCCcchHHHHHHHHHhcCChHHHH
Q 048812 115 LINGYPQEVFAIYLYLVTRT------------VLLNKCGKLKEVCQLFDKLP----NRDVISWNTMISCYTSMGMYREGL 178 (645)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~------------~~~~~~g~~~~A~~~f~~m~----~~~~~~~n~li~~~~~~g~~~~A~ 178 (645)
++.|++++|+++|+.|.+.+ .+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999854 78999999999999999998 589999999999999999999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCC
Q 048812 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE--STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256 (645)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 256 (645)
++|++|.+.|+.||..||+.+|.+|++.|++++|.++|.+|.+ .|+.||..+|++||++|+++|++++|.++|+.|..
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 67899999999999999999999999999999654
Q ss_pred C--CCChhhHHHHHHHHHhcCCHHHHHHHHHhcc----cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHH
Q 048812 257 D--EVDVVLWTTLVSGYVKSNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330 (645)
Q Consensus 257 ~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~ 330 (645)
. .|+..+||++|.+|++.|++++|.++|++|. .||.+||++++ .+|...|.++.+.+++..+
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI------------~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV------------DVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH------------HHHHhCCCHHHHHHHHHHH
Confidence 4 4688999999999999999999999999998 68999999999 4555567889999999999
Q ss_pred HHcCCCCC---------------cHHHHHHHHhhcC----cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048812 331 KKNQISID---------------NIELAYDLFSEIS----EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391 (645)
Q Consensus 331 ~~~~~~~~---------------~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 391 (645)
.+.|+..+ ++++|.++|+.|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99888776 8999999999995 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----HcC-------------------CHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG----RAG-------------------HLEESANF 448 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~ 448 (645)
||+.++.+|++.|++++|.++|..|. +.|+.||..+|++|++++. +++ ..++|..+
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 99999999999999999999999999 6799999999999998743 222 24679999
Q ss_pred HHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 449 ITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE-TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 449 ~~~m---~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
|++| ++.||..||++++.++.+.+..+.+..+++.+.. -.+.+..+|.+|++.+.+. .++|..++++|.+.|+.
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 9999 7999999999999888888888988888887754 3355678999999988432 36899999999999998
Q ss_pred ccCc
Q 048812 525 KQLG 528 (645)
Q Consensus 525 ~~~~ 528 (645)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 7653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-58 Score=514.42 Aligned_cols=442 Identities=19% Similarity=0.337 Sum_probs=388.4
Q ss_pred hhccCCchhHHhhhhccccCCChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHH
Q 048812 19 LVRLGLVPKMRISRKFANVCPVSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95 (645)
Q Consensus 19 ~~~~~~~~~m~~~~~~~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 95 (645)
..++.+|..|... .+..||..+|+.++.+| ++++.+.++|..+.+.|+.||+.++|.|+++|+++|+++.|.++
T Consensus 104 ~~Al~~f~~m~~~---~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 104 REALELFEILEAG---CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH
Confidence 3456777777754 24679999999999998 78999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------------------------------------
Q 048812 96 IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT----------------------------------------- 134 (645)
Q Consensus 96 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------------------------- 134 (645)
|++|++||+++||++|.+|++.|++++|+++|++|...+
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 999999999999999999999999999999999996521
Q ss_pred ------chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 135 ------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 135 ------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
.+|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++.|.++|..|.+.|++||..++|+||++|+++|++++|.++|++ +.+||+++||+||.+|++.|+.++|+++|++|.
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~--m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR--MPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh--CCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 678999999999999999999999999999998
Q ss_pred cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 289 ~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
+.+. .||.+||+++|.+|++.
T Consensus 419 ~~g~-----------------------------------------------------------~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 419 AEGV-----------------------------------------------------------APNHVTFLAVLSACRYS 439 (697)
T ss_pred HhCC-----------------------------------------------------------CCCHHHHHHHHHHHhcC
Confidence 6554 58999999999999999
Q ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 048812 369 GHAQKAIDLFLEMEE-TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447 (645)
Q Consensus 369 g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 447 (645)
|+.++|.++|++|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999975 689999999999999999999999999988765 578999999999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCchhHHHHHH-------H---H-HHcCCchHHH
Q 048812 448 FITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDP--LNDGAHVLLAN-------I---Y-AKAGRLDDMS 512 (645)
Q Consensus 448 ~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p--~~~~~y~~l~~-------~---~-~~~g~~~~a~ 512 (645)
+++++ +..|+ ..+|..|++.|.+.|++++|.+++++|.+.+- .+..+|+.+.+ . . ....-++...
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 99887 56664 67899999999999999999999999988542 12111211100 0 0 0001134567
Q ss_pred HHHHHHHhCCCcccCc
Q 048812 513 RIRMKLRDMGLKKQLG 528 (645)
Q Consensus 513 ~~~~~m~~~~~~~~~~ 528 (645)
++..+|++.|..++..
T Consensus 596 ~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 596 ELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 7888999999776554
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-57 Score=508.37 Aligned_cols=497 Identities=18% Similarity=0.225 Sum_probs=410.9
Q ss_pred CCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHH
Q 048812 70 MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL 149 (645)
Q Consensus 70 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~ 149 (645)
.++...+..+++.++++|++++|.++|++|+.++...|+.++.+..-. .+.+.|.+++|..+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~------------------~~~~~g~~~eAl~l 428 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK------------------ACKKQRAVKEAFRF 428 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHH------------------HHHHCCCHHHHHHH
Confidence 567788999999999999999999999999987777666554432111 01456778888888
Q ss_pred HccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh
Q 048812 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229 (645)
Q Consensus 150 f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 229 (645)
|+.|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..
T Consensus 429 f~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhcc------cCCchhHHHHHHh
Q 048812 230 LLNYLVDMYFKCGKIGEAQKLLGRYEID--EVDVVLWTTLVSGYVKSNERDEARRLFDEMV------ERNLISWTLMISG 301 (645)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~t~~~ll~~ 301 (645)
+|++||++|++.|++++|.++|+.|... .||.++||.||.+|++.|++++|.++|++|. .||.++|+++|.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 9999999999999999999999997433 5899999999999999999999999999995 5899999999998
Q ss_pred hhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc----CChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 302 MLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE----KNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
|++.| ++++|.++|+.|.+ |+..+||++|.+|++.|++++|+++
T Consensus 589 y~k~G--------------------------------~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 589 CANAG--------------------------------QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHCC--------------------------------CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 88887 78888888888865 6779999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CC
Q 048812 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM---PI 454 (645)
Q Consensus 378 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~ 454 (645)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++||++|+++|++++|.++|++| +.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999 6799999999999999999999999999999998 57
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEE
Q 048812 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533 (645)
Q Consensus 455 ~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~ 533 (645)
.||..+|++||.+|++.|++++|.++|++|.+.+ ..+..+|..|+.+|++.|++++|.+++++|.+.|+.++.......
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 8999999999999999999999999999998854 335689999999999999999999999999999998775322111
Q ss_pred E-------------CCEEEEEEeCCC--CCcChHHHHHHHHHHHHHHHHcCcchhh---------------hhhhHHHHH
Q 048812 534 Q-------------GGFVHKFTSGDI--FNPHSEEIYLMLNEIEMTLQQQGLQETS---------------LQHRERLAV 583 (645)
Q Consensus 534 ~-------------~~~~~~f~~~~~--~~~~~~~~~~~l~~l~~~m~~~g~~~~~---------------~~~se~la~ 583 (645)
+ ...+..|-.+.. ......++. .++++|.+.|+.++. ....+.|-.
T Consensus 796 Iglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al----~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 796 TGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL----MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH----HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHH
Confidence 1 112222322211 111233344 789999999998332 122233334
Q ss_pred HhhhccCCCCCeE--EEEccccccCC-cchhHHHhhhccCeeEE
Q 048812 584 AFGLISTSEKTTI--RIVNNLRICGD-CHSFMKVTSQVYNREIV 624 (645)
Q Consensus 584 ~~~l~~~~~~~~~--~~~~n~~~c~~-~~~~~~~~s~~~~~~i~ 624 (645)
.+++.+.+++... .+++. |+. -+.|+.+...+..+.|+
T Consensus 872 ~m~~~~~~~~~~~y~~Li~g---~~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 872 NLGISADSQKQSNLSTLVDG---FGEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HhccCCCCcchhhhHHHHHh---hccChHHHHHHHHHHHHcCCC
Confidence 4555555544321 12222 222 24788888888877553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.3e-25 Score=261.29 Aligned_cols=461 Identities=11% Similarity=0.015 Sum_probs=307.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
++.+.|...+..+.+... ........++..|.+.|++++|..+++++. +++..+|+.+...+...|++++|++.|+
T Consensus 411 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred CChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 677777777777766552 234455566777777788888887777764 3456677777777777888888888887
Q ss_pred HHhhcC-----------chhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh
Q 048812 129 YLVTRT-----------VLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194 (645)
Q Consensus 129 ~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (645)
++...+ .++...|++++|.+.|+++.+ .+..+++.+...+.+.|++++|+..|+++...+ +.+..
T Consensus 490 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 568 (899)
T TIGR02917 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIE 568 (899)
T ss_pred HHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchh
Confidence 776533 455667777777777777642 355677777777777777777777777776653 23445
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHh
Q 048812 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVK 273 (645)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~ 273 (645)
.+..+...+...|+++.|.+++..+.+.. +.+..++..+...|.+.|++++|...|+.+....| +...|..+...+.+
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 66667777777777777777777776554 55666777777777777777777777776433333 55667777777777
Q ss_pred cCCHHHHHHHHHhccc--C-CchhHHHHHHhhhccCCchhh-hhhccccch-hhHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 048812 274 SNERDEARRLFDEMVE--R-NLISWTLMISGMLNQDAEFKY-KSCASIGAL-YHGIWVHVYIKKNQISIDNIELAYDLFS 348 (645)
Q Consensus 274 ~g~~~~A~~~~~~m~~--~-~~~t~~~ll~~~~~~~~~~~~-~a~~~~~~l-~~g~~i~~~~~~~~~~~~~~~~A~~~f~ 348 (645)
.|++++|...|+++.+ | +..++..+...+.+.|+.-.- ..+...... .....+...+.......+++++|...|.
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777652 2 345566666666555411000 000000000 0000111111122223346777777777
Q ss_pred hcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 048812 349 EISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426 (645)
Q Consensus 349 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 426 (645)
.+.. |+..++..++..+.+.|++++|.+.++++.+. .+.+...+..+...|...|+.++|.++|+++.+. -.++.
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 804 (899)
T TIGR02917 728 KALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNA 804 (899)
T ss_pred HHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCH
Confidence 6543 44566667777788888888888888877765 3345667777777777788888888888877742 23356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
..++.+..++...|+ .+|.+++++. ...| +..++..+...+...|++++|...++++++.+|.++.++..++.+|.+
T Consensus 805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 805 VVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 777777888888888 7777777765 3333 455667777777888888888888888888888777888888888888
Q ss_pred cCCchHHHHHHHHHH
Q 048812 505 AGRLDDMSRIRMKLR 519 (645)
Q Consensus 505 ~g~~~~a~~~~~~m~ 519 (645)
.|++++|.+++++|.
T Consensus 884 ~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 884 TGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHh
Confidence 888888888887774
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2.6e-25 Score=258.81 Aligned_cols=452 Identities=12% Similarity=0.047 Sum_probs=375.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHH
Q 048812 51 CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIY 127 (645)
Q Consensus 51 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 127 (645)
.++.++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|+++.. .+...+..++..+.+.|++++|+.++
T Consensus 376 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 489999999999998765 44677888899999999999999999998652 33556778889999999999999999
Q ss_pred HHHhhcC-----------chhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 048812 128 LYLVTRT-----------VLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193 (645)
Q Consensus 128 ~~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (645)
+.+.... ..|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+.
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 9998743 677789999999999998753 456678889999999999999999999998864 3466
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHH
Q 048812 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYV 272 (645)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~ 272 (645)
.++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+....| +..+|..+...|.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 788889999999999999999999998876 56777888999999999999999999998644444 6789999999999
Q ss_pred hcCCHHHHHHHHHhccc--C-CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHH--------------HHHcCC
Q 048812 273 KSNERDEARRLFDEMVE--R-NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY--------------IKKNQI 335 (645)
Q Consensus 273 ~~g~~~~A~~~~~~m~~--~-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~--------------~~~~~~ 335 (645)
+.|++++|...|+++.+ | +...+..+...|.+.|+ .+.+...... +.....
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN------------YAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999873 3 44566677777766652 2222222222 222223
Q ss_pred CCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048812 336 SIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412 (645)
Q Consensus 336 ~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 412 (645)
..+++++|.++++.+.. .+...|..+...+...|++++|++.|+++... .|+..++..+..++...|+.++|.+.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 34588899999888764 45677888889999999999999999999885 45657788888999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
++.+.+. ...+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ ++|+..++++++..|+
T Consensus 759 ~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 9998853 2346788899999999999999999999987 334577889999999999999 8899999999999999
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 491 ~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++..+..++.+|...|++++|.++++++.+.+
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998765
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.95 E-value=1.3e-28 Score=203.63 Aligned_cols=98 Identities=51% Similarity=0.840 Sum_probs=79.6
Q ss_pred ceeEEEECCEEEEEEeCCCCCcChHHHHHHHH-HHHHHHHHcCcc--------------hhh-hhhhHHHHHHhhhccCC
Q 048812 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN-EIEMTLQQQGLQ--------------ETS-LQHRERLAVAFGLISTS 591 (645)
Q Consensus 528 ~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~-~l~~~m~~~g~~--------------~~~-~~~se~la~~~~l~~~~ 591 (645)
|+||+++ |.|++||.+||+.+.+...+. .....++..|+. ++. ++||||||+||||+++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~- 76 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT- 76 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce-
Confidence 7899876 999999999999944443222 122233333332 124 8999999999999998
Q ss_pred CCCeEEEEccc-cccCCcchhHHHhhhccCeeEEEecCCcccccc
Q 048812 592 EKTTIRIVNNL-RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635 (645)
Q Consensus 592 ~~~~~~~~~n~-~~c~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~ 635 (645)
+|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 77 -----~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 -----RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred -----eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 899999 999999999999999999999999999999997
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=4.8e-19 Score=185.46 Aligned_cols=306 Identities=12% Similarity=0.068 Sum_probs=247.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHH
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS---GSLLNYLVDMYF 239 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~ 239 (645)
.....+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..++..+++.+..++ ..++..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33445678899999999999999873 23455788888899999999999999999887642222 356788899999
Q ss_pred HcCCHHHHHHHHcccCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhcccc
Q 048812 240 KCGKIGEAQKLLGRYEIDE-VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318 (645)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~ 318 (645)
+.|++++|..+|+++.... .+..+++.++..+.+.|++++|.+.|+.+.+.+......
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------------- 177 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--------------------- 177 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH---------------------
Confidence 9999999999999964433 467889999999999999999999999886433211000
Q ss_pred chhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048812 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398 (645)
Q Consensus 319 ~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 398 (645)
.....|..+...+.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 178 ----------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 222 (389)
T PRK11788 178 ----------------------------------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGD 222 (389)
T ss_pred ----------------------------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHH
Confidence 012235677888899999999999999998753 223567778888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChH
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~ 475 (645)
.+...|++++|.++|+++.+. .|+ ...++.++.+|.+.|++++|.+.++++ ...|+...+..+...+...|+++
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHH
Confidence 999999999999999999852 444 467889999999999999999999987 55688777788999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHH---cCCchHHHHHHHHHHhCCCcccCce
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANIYAK---AGRLDDMSRIRMKLRDMGLKKQLGY 529 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 529 (645)
+|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.+
T Consensus 300 ~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 300 AAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999874 56666666554 5699999999999999999988874
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=1.7e-17 Score=195.12 Aligned_cols=462 Identities=14% Similarity=0.058 Sum_probs=289.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhhh-hhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHH
Q 048812 51 CSSIDEFERIHSHLITTNLMRDPQIS-TQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAI 126 (645)
Q Consensus 51 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 126 (645)
.++.++|.+.+..+++.. +++.... ..+.......|+.++|++.|+++. +.+...+..+...+...|++++|+..
T Consensus 125 ~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 488999999999988664 3343221 112222334589999999999876 33566788888999999999999999
Q ss_pred HHHHhhcCc-------h------------------------hhccCChHHHHHHHccCC----CCCcchHHHHHHHHHhc
Q 048812 127 YLYLVTRTV-------L------------------------LNKCGKLKEVCQLFDKLP----NRDVISWNTMISCYTSM 171 (645)
Q Consensus 127 ~~~m~~~~~-------~------------------------~~~~g~~~~A~~~f~~m~----~~~~~~~n~li~~~~~~ 171 (645)
|+++..... . +......+.|...+.+.. .|+.. .......+...
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~ 282 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDS 282 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHC
Confidence 998865320 0 001111223333333221 11111 12334566778
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch-h------------HHHHHHHHH
Q 048812 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG-S------------LLNYLVDMY 238 (645)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~------------~~~~li~~y 238 (645)
|++++|+..|++..+.. +-+...+..+..++.+.|++++|...+..+++....... . ....+...+
T Consensus 283 g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 89999999998888753 225667888888888889999999999888876532211 1 112335677
Q ss_pred HHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhccc--CC-chhHHHHHHhhhccCCchhhhhh
Q 048812 239 FKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVE--RN-LISWTLMISGMLNQDAEFKYKSC 314 (645)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~t~~~ll~~~~~~~~~~~~~a~ 314 (645)
.+.|++++|...|++.....| +...+..+...+...|++++|++.|++..+ |+ ...+..+...|.+.+.+-....+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888999999999888544444 566777888888899999999999988873 33 23343343334322110000111
Q ss_pred ccccchh--------hH--HHHHHHHHHcCCCCCcHHHHHHHHhhcCc--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048812 315 ASIGALY--------HG--IWVHVYIKKNQISIDNIELAYDLFSEISE--K-NVYLWTSVIAAYAMAGHAQKAIDLFLEM 381 (645)
Q Consensus 315 ~~~~~l~--------~g--~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 381 (645)
..+.... .. ...+..........++.++|.+.|++... | +...+..+...|.+.|++++|+..|++.
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1100000 00 00111122222345688999999987754 3 4567788899999999999999999998
Q ss_pred HHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHh
Q 048812 382 EETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM---------QHYGCMVDLLGRAGHLEESANFITS 451 (645)
Q Consensus 382 ~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A~~~~~~ 451 (645)
.+. .| +...+..+...+...++.++|...++.+... ...++. ..+..+.+.+...|+.++|.++++.
T Consensus 522 l~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 522 AQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 874 34 3444444444566778888888887765421 111111 1123445566677777777777774
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 452 m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
-| ++...+..+...+...|+.++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+
T Consensus 599 ~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 599 QP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 33 34445566666677777777777777777777777777777777777777777777777776544
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1e-18 Score=174.87 Aligned_cols=370 Identities=15% Similarity=0.146 Sum_probs=277.7
Q ss_pred hhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhh
Q 048812 73 PQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLN 138 (645)
Q Consensus 73 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~ 138 (645)
..+|..+.+.+-..|++++|..+++.+. +..+..|-.+..++...|+.+.|.+.|...++.+ .+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 3456667777777788888888777664 2345677777778888888888887777777754 3344
Q ss_pred ccCChHHHHHHHccCC--CCC-cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChHHHHH
Q 048812 139 KCGKLKEVCQLFDKLP--NRD-VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLEMGKN 214 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~--~~~-~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~ 214 (645)
..|++++|...+-+.. +|. .++|+.|.-.+..+|+...|+..|++.... .|+- ..|..|-..+...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 4566666666555433 232 456777777777777777777777776653 4443 366667777777777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCch
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 293 (645)
.+..+.... +....++..+...|-..|.+|-|...+++.....|+ ...|+.|..++-..|+..+|.+.+.+...-.
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-- 350 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-- 350 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--
Confidence 766665443 334555666666777777777777777764444453 4567777777777777777777766554211
Q ss_pred hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHH
Q 048812 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373 (645)
Q Consensus 294 t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 373 (645)
..-..+.+.|...|...|.+++
T Consensus 351 ----------------------------------------------------------p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 351 ----------------------------------------------------------PNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred ----------------------------------------------------------CccHHHHHHHHHHHHHhccchH
Confidence 1123567789999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 048812 374 AIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITS 451 (645)
Q Consensus 374 A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (645)
|..+|....+ +.|. ...++.|...|-..|++++|+..+++..+ |+|+ ...|+.|...|-..|+.++|.+.+.+
T Consensus 373 A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 373 ATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred HHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 9999999887 5676 67899999999999999999999999884 8998 68999999999999999999999988
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 452 M-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 452 m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
. .+.|. ....+.|.+.|...|++.+|+..++..+.+.|+.+.+|..++..+.-..+|.+
T Consensus 448 AI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 448 AIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 6 67775 45789999999999999999999999999999999999998888776677766
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=9.9e-17 Score=188.74 Aligned_cols=447 Identities=9% Similarity=0.018 Sum_probs=229.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCC------cccHHH----------------
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE------IKIWNS---------------- 109 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~---------------- 109 (645)
++.++|.+.++.+++.. +.++.....|...+...|+.++|...|+++.... ...|..
T Consensus 161 g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 161 AQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHH
Confidence 78889999999998875 4567788899999999999999999998864211 011110
Q ss_pred -HHHHHHHcCChhHHHHHHHHHhhc-----------CchhhccCChHHHHHHHccCCC--C-CcchHHHHHHHHHhcCCh
Q 048812 110 -IIENQLINGYPQEVFAIYLYLVTR-----------TVLLNKCGKLKEVCQLFDKLPN--R-DVISWNTMISCYTSMGMY 174 (645)
Q Consensus 110 -li~~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g~~ 174 (645)
.+..+-.......|...+.++... ...+...|++++|+..|++..+ | +...+..|...|.+.|++
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 010000011112223333222110 0223344555555555544332 2 334445555555555555
Q ss_pred HHHHHHHHHHhhCCCCC-ChhhH------------HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc
Q 048812 175 REGLGLLSKMGAEGVSP-DEVTM------------VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241 (645)
Q Consensus 175 ~~A~~~~~~m~~~g~~p-~~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 241 (645)
++|+..|++..+..... +...+ ......+.+.|++++|.+.+..+++.. +.+...+..+...|...
T Consensus 320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~ 398 (1157)
T PRK11447 320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR 398 (1157)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 55555555544432110 00000 011223344455555555555555443 23334444445555555
Q ss_pred CCHHHHHHHHcccCCCCC-ChhhH------------------------------------------HHHHHHHHhcCCHH
Q 048812 242 GKIGEAQKLLGRYEIDEV-DVVLW------------------------------------------TTLVSGYVKSNERD 278 (645)
Q Consensus 242 g~~~~A~~~~~~m~~~~~-~~~~~------------------------------------------~~li~~~~~~g~~~ 278 (645)
|++++|.+.|++.....| +...+ ..+...+...|+++
T Consensus 399 g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~ 478 (1157)
T PRK11447 399 KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWA 478 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHH
Confidence 555555555544322222 12222 23334455566666
Q ss_pred HHHHHHHhcc--cCCc-hhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcC--------------CCCCcHH
Q 048812 279 EARRLFDEMV--ERNL-ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ--------------ISIDNIE 341 (645)
Q Consensus 279 ~A~~~~~~m~--~~~~-~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~--------------~~~~~~~ 341 (645)
+|++.|++.. .|+. ..+..+...| ...|..+.+......+++.. ...++.+
T Consensus 479 eA~~~~~~Al~~~P~~~~~~~~LA~~~------------~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 479 QAAELQRQRLALDPGSVWLTYRLAQDL------------RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHH
Confidence 6666666665 2321 1222222222 22233333333333332211 1122455
Q ss_pred HHHHHHhhcCcCC----hh---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 048812 342 LAYDLFSEISEKN----VY---------LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408 (645)
Q Consensus 342 ~A~~~f~~~~~~~----~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 408 (645)
+|...++.+.... .. .+..+...+...|+.++|+.+++ . .+++...+..+...+...|+.++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHH
Confidence 5666666554311 10 11223445566666666666655 1 23344455556666677777777
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048812 409 GYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLT 485 (645)
Q Consensus 409 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 485 (645)
|.+.|++..+ ..| +...+..+..+|...|++++|.+.++.. ...| +..++..+..++...|++++|.+++++++
T Consensus 622 A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 622 ARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7777777664 244 3566666777777777777777777665 2333 34455566666667777777777777777
Q ss_pred hcCCCCc------hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 486 ETDPLND------GAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 486 ~~~p~~~------~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+..|+++ ..+..+..++...|++++|...+++...
T Consensus 699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 699 PQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6554433 2444556677777777777777776643
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=3.4e-18 Score=179.01 Aligned_cols=282 Identities=15% Similarity=0.134 Sum_probs=227.6
Q ss_pred CChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHhcCCChHHHHH
Q 048812 141 GKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD---EVTMVSLISARTKLRDLEMGKN 214 (645)
Q Consensus 141 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~ 214 (645)
|++++|...|.++.+ .+..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|+++.|..
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 444444444444432 3456889999999999999999999999987643222 2467788889999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD------VVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+....|+ ...|..+...+.+.|++++|.+.|+++.
T Consensus 129 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999998764 567788999999999999999999999985433332 1245677888899999999999998876
Q ss_pred cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 289 ~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
+.+ +.+...+..+...|.+.
T Consensus 208 ~~~------------------------------------------------------------p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 208 AAD------------------------------------------------------------PQCVRASILLGDLALAQ 227 (389)
T ss_pred hHC------------------------------------------------------------cCCHHHHHHHHHHHHHC
Confidence 432 12345677888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
|++++|+++|+++...+..+...++..+..++...|++++|.+.++++.+ ..|+...+..++..+.+.|++++|.++
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999764332356788899999999999999999999885 367777779999999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 048812 449 ITSM-PIPPDVSIWSSLLRACRC---HQNVKLAEHAFKHLTE 486 (645)
Q Consensus 449 ~~~m-~~~pd~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~ 486 (645)
++++ ...|+...++.++..+.. .|+.+++..+++++++
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9876 667999999999988764 5689999999999987
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=7.1e-17 Score=161.77 Aligned_cols=347 Identities=15% Similarity=0.161 Sum_probs=251.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh-HHHHHH
Q 048812 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS-LLNYLV 235 (645)
Q Consensus 158 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li 235 (645)
..+|..+...+-..|++++|+++|+.|++. +|+ ...|..+..++...|+.+.|.+.+.+.++.+ |+.. ..+-+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 456777777777777777777777777765 343 4467777777777777777777777766553 3333 223344
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhh
Q 048812 236 DMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314 (645)
Q Consensus 236 ~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~ 314 (645)
+..-..|++++|...+.+..+..|. .+.|+.|...+-..|+...|+.-|++..+-|..- +.+|...| ...
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f----~dAYiNLG-----nV~ 262 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF----LDAYINLG-----NVY 262 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc----hHHHhhHH-----HHH
Confidence 4445567777777666654444453 4567777777777777777777777766333211 11222222 111
Q ss_pred ccccchhhHH--------------HHHHHHHHcCCCCCcHHHHHHHHhhcCc--CC-hhHHHHHHHHHHHcCCHHHHHHH
Q 048812 315 ASIGALYHGI--------------WVHVYIKKNQISIDNIELAYDLFSEISE--KN-VYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 315 ~~~~~l~~g~--------------~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l 377 (645)
...+..+.+- .+|+.+.-...+.+.++.|...|++..+ |+ ...||.|..++-..|+..+|.+.
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHH
Confidence 1111111111 1222222222334488899999887765 33 57899999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 048812 378 FLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PI 454 (645)
Q Consensus 378 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 454 (645)
|.+.... .|+ ..+.+.|...+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|...+++. .+
T Consensus 343 YnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 343 YNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9998874 565 67899999999999999999999998774 6776 678899999999999999999999886 78
Q ss_pred CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 455 PPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 455 ~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|+. ..++.+...|...|+.+.|.+.+.+++..+|.-+.++..|..+|-.+|+..+|+.-++...+..
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 8875 4899999999999999999999999999999999999999999999999999999999886643
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.7e-16 Score=175.36 Aligned_cols=383 Identities=12% Similarity=0.042 Sum_probs=235.7
Q ss_pred hhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCC
Q 048812 77 TQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154 (645)
Q Consensus 77 ~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~ 154 (645)
..+-+.|.+.|+++.|...|++.. .|+...|..+..+|.+.|++++|++.+.+.+..+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------------------- 190 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------------------- 190 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------------------
Confidence 345566778888999998888754 5677778888888888888888888777766532
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC----------------------------CC-ChhhHHHHHHHHhc
Q 048812 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV----------------------------SP-DEVTMVSLISARTK 205 (645)
Q Consensus 155 ~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~----------------------------~p-~~~t~~~ll~~~~~ 205 (645)
..+...|..+..+|...|++++|+.-|......+- .| +...+..+.. +..
T Consensus 191 p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~ 269 (615)
T TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQ 269 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHH
Confidence 11223344444444444444444444333222110 00 0001110000 000
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH------HHcCCHHHHHHHHcccCCC---CC-ChhhHHHHHHHHHhcC
Q 048812 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY------FKCGKIGEAQKLLGRYEID---EV-DVVLWTTLVSGYVKSN 275 (645)
Q Consensus 206 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y------~~~g~~~~A~~~~~~m~~~---~~-~~~~~~~li~~~~~~g 275 (645)
.........-+.... ..+......++..+ ...+++++|.+.|+..... .| +...|+.+...+...|
T Consensus 270 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 270 SFRPKPRPAGLEDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred HccCCcchhhhhccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 000000000000000 00000001111111 1234566666666653221 12 3445666666666677
Q ss_pred CHHHHHHHHHhcccCCch---hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC-
Q 048812 276 ERDEARRLFDEMVERNLI---SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS- 351 (645)
Q Consensus 276 ~~~~A~~~~~~m~~~~~~---t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~- 351 (645)
++++|+..|++..+.+.. +|..+-..+.. .+++++|...|+...
T Consensus 346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~--------------------------------~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLE--------------------------------LGDPDKAEEDFDKALK 393 (615)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------------------------------CCCHHHHHHHHHHHHH
Confidence 777777777666532221 22222211211 125555665555433
Q ss_pred --cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChH
Q 048812 352 --EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQ 427 (645)
Q Consensus 352 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 427 (645)
..+...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|...|+...+ ..| +..
T Consensus 394 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~ 468 (615)
T TIGR00990 394 LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPD 468 (615)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChH
Confidence 245778999999999999999999999999885 454 66777788899999999999999999885 345 478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPPDV-S-------IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~-~-------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
.|+.+..++...|++++|.+.|++. ...|+. . .++..+..+...|++++|+.+++++++++|++...+..+
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~l 548 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 8899999999999999999999885 444431 1 122222234446999999999999999999998899999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+.+|...|++++|.+.+++..+.
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.1e-14 Score=164.30 Aligned_cols=474 Identities=11% Similarity=0.010 Sum_probs=301.8
Q ss_pred cccCCChhhHHHHHhhcCCHHHHHHHHHHHHHhCCCCChhhhhhHHHH--------HHhcCChHHHHHHHhhCCCCC--c
Q 048812 35 ANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF--------LVFTGDLGYAQQIIRQGDEPE--I 104 (645)
Q Consensus 35 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~g~~~~A~~~f~~~~~~~--~ 104 (645)
....|+...|...+...++.+.+..+++.+++.. +.+..++..+... |.+.+....|+. .+...|+ .
T Consensus 105 v~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~ 181 (987)
T PRK09782 105 LKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEG 181 (987)
T ss_pred HhcCcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCc
Confidence 3456666666666655677777778888887775 3445555555555 777766666666 3333333 3
Q ss_pred cc-HHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhhc-cCChHHHHHHHccCCCCCcchHHHHHHHHHhc
Q 048812 105 KI-WNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLNK-CGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171 (645)
Q Consensus 105 ~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~-~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~ 171 (645)
.. .-.+...|.+.+++++|+.++.++.+.+ ..|.. .++ +.|..+++...+.|...+.++...|.+.
T Consensus 182 ~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~ 260 (987)
T PRK09782 182 KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYR 260 (987)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHC
Confidence 33 3444889999999999999999999865 45665 366 8888888765556888999999999999
Q ss_pred CChHHHHHHHHHHhhCCCC-CChhhHHHHH------------------------------HHHhcCCChHHHHHH-----
Q 048812 172 GMYREGLGLLSKMGAEGVS-PDEVTMVSLI------------------------------SARTKLRDLEMGKNL----- 215 (645)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll------------------------------~~~~~~~~~~~a~~~----- 215 (645)
|+.++|.++++++...-.. |...++..++ .-+.+.++++.++++
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 9999999999998654222 3333332222 112222333322222
Q ss_pred ------------------------HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC----ChhhHHHH
Q 048812 216 ------------------------HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV----DVVLWTTL 267 (645)
Q Consensus 216 ------------------------~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~~~~l 267 (645)
+..+.+.. +-+....--+.-...+.|+.++|.++|++.-...+ +...-+-+
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 341 ANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred cchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 11111110 11222222222334566777777777765322111 12223344
Q ss_pred HHHHHhcCC-------------------------HHH---HHHHHHhcc--cCC---chhHHHHHHhhhccCCchhh---
Q 048812 268 VSGYVKSNE-------------------------RDE---ARRLFDEMV--ERN---LISWTLMISGMLNQDAEFKY--- 311 (645)
Q Consensus 268 i~~~~~~g~-------------------------~~~---A~~~~~~m~--~~~---~~t~~~ll~~~~~~~~~~~~--- 311 (645)
+..|.+.+. ..+ +...+.... .|+ ...|..+-..+......-.+
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~ 499 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAW 499 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHH
Confidence 444444433 111 222222222 122 22233222222221100000
Q ss_pred -hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048812 312 -KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388 (645)
Q Consensus 312 -~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 388 (645)
.++.....- ..+-.+.......++.++|...|+.+.. ++...+..+...+.+.|+.++|...|++..+.. |
T Consensus 500 ~~Al~~~Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P 573 (987)
T PRK09782 500 LQAEQRQPDA----WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--L 573 (987)
T ss_pred HHHHHhCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 111111110 0111111111244588999999986654 445567777888899999999999999998753 4
Q ss_pred CH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048812 389 DQ-VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLL 465 (645)
Q Consensus 389 d~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll 465 (645)
+. ..+..+.......|++++|...+++..+ +.|+...|..+..++.+.|++++|...+++. ...| +...+..+.
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 43 3333444455667999999999999884 5788889999999999999999999999887 5556 456778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++...|+.++|+..++++++.+|+++..+..+..+|...|++++|...+++..+..
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999999999999999999999999987644
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=1.5e-15 Score=170.85 Aligned_cols=403 Identities=9% Similarity=-0.007 Sum_probs=286.8
Q ss_pred CCChhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHH
Q 048812 70 MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146 (645)
Q Consensus 70 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A 146 (645)
+.++....-.+......|+.++|++++.+..+ .+...+..+...+...|++++|+++|++...
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~-------------- 77 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS-------------- 77 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 34555566677778888999999988887653 3344578888888777776666666655431
Q ss_pred HHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 048812 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226 (645)
Q Consensus 147 ~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 226 (645)
....+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.+.|...+..+++.. +.
T Consensus 78 ------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~ 148 (765)
T PRK10049 78 ------LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQ 148 (765)
T ss_pred ------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 112345667788888999999999999999998762 23444 7777788888999999999999999875 44
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHhccc---
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV------VLWTTLVSGYV-----KSNER---DEARRLFDEMVE--- 289 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~--- 289 (645)
+...+..+...+.+.|..+.|.+.++.... .|+. .....++.... ..+++ ++|++.++.+.+
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 666667788888889999999999987443 3321 11222222222 22334 778888887762
Q ss_pred CCchhHHHHHHhhhccCCchhhhhhccccchhhHHHH-HHHHHHcCCCCCcHHHHHHHHhhcCcCC--hh--HHHHHHHH
Q 048812 290 RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV-HVYIKKNQISIDNIELAYDLFSEISEKN--VY--LWTSVIAA 364 (645)
Q Consensus 290 ~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i-~~~~~~~~~~~~~~~~A~~~f~~~~~~~--~~--~~~~li~~ 364 (645)
.+......... +..- ...+ +..+++++|...|+.+...+ .. .--.+...
T Consensus 228 ~~p~~~~~~~~----------------------a~~d~l~~L----l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~ 281 (765)
T PRK10049 228 DNPDATADYQR----------------------ARIDRLGAL----LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASA 281 (765)
T ss_pred cCCccchHHHH----------------------HHHHHHHHH----HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 12111111110 0000 0001 12247899999999887632 11 12225778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKP---DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN----------IKPK---MQH 428 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~ 428 (645)
|...|++++|+..|+++....... .......+..++...|++++|.++++.+.+... -.|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999999987643111 134566677788999999999999999885321 1123 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
+..+..++...|++++|+++++++ ...| +...+..+...+...|++++|+..++++++++|+++..+..++..+...|
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 567888999999999999999997 3334 67789999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 048812 507 RLDDMSRIRMKLRDMG 522 (645)
Q Consensus 507 ~~~~a~~~~~~m~~~~ 522 (645)
+|++|..+++.+.+..
T Consensus 442 ~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 442 EWRQMDVLTDDVVARE 457 (765)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999997643
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.4e-15 Score=167.58 Aligned_cols=312 Identities=12% Similarity=0.024 Sum_probs=158.7
Q ss_pred ccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHHH
Q 048812 139 KCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGKN 214 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 214 (645)
+.|+.++|..+++.... .+...+..++.+....|++++|++.|+++... .|+ ...+..+...+...|+++.|..
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666555432 23334444455555566666666666666554 232 3345555555566666666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCc-
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNL- 292 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 292 (645)
.+..+++.. +.+...+..+...|...|+.++|...++.+....| +...+..+ ..+.+.|++++|...++.+...+.
T Consensus 132 ~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 132 LAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 666666543 33455555566666666666666666654322223 22222222 235556666666666665543221
Q ss_pred ---hhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHH
Q 048812 293 ---ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYA 366 (645)
Q Consensus 293 ---~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 366 (645)
..+..+...+. ..++.++|...|+.... .+...+..+...|.
T Consensus 210 ~~~~~~~~l~~~l~--------------------------------~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 210 ERQESAGLAVDTLC--------------------------------AVGKYQEAIQTGESALARGLDGAALRRSLGLAYY 257 (656)
T ss_pred cchhHHHHHHHHHH--------------------------------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 11111111111 12255555555554432 23445555555566
Q ss_pred HcCCHHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcC
Q 048812 367 MAGHAQK----AIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAG 440 (645)
Q Consensus 367 ~~g~~~~----A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 440 (645)
..|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++..+ ..|+ ...+..+...|.+.|
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCC
Confidence 6666553 55556555543 233 44555555555566666666666655553 2333 334445555566666
Q ss_pred CHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 441 HLEESANFITSM-PIPPDVSIW-SSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 441 ~~~~A~~~~~~m-~~~pd~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 666666655554 233443222 223344555666666666666666655543
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=6e-15 Score=166.30 Aligned_cols=452 Identities=11% Similarity=0.002 Sum_probs=291.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHHcCChhHHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE--PEIKIWNSIIENQLINGYPQEVFAIYLY 129 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 129 (645)
|++.+|...+..+++.. |-++.++..|...|.+.|++++|+..+++... |+-..|..++... +++.+|...|++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 89999999999999887 34588899999999999999999999998763 3323333333332 888999999999
Q ss_pred HhhcC-----------ch--------hhccCChHHHHHHHccCCCCC--cchHHH-HHHHHHhcCChHHHHHHHHHHhhC
Q 048812 130 LVTRT-----------VL--------LNKCGKLKEVCQLFDKLPNRD--VISWNT-MISCYTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 130 m~~~~-----------~~--------~~~~g~~~~A~~~f~~m~~~~--~~~~n~-li~~~~~~g~~~~A~~~~~~m~~~ 187 (645)
+...+ .. |.+.+....|++ .+...|+ ...... +...|.+.|++++|++++.++.+.
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 98854 22 656655556665 2322333 443344 488999999999999999999988
Q ss_pred CCCCChhhHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CCChhh
Q 048812 188 GVSPDEVTMVSLISARTK-LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID---EVDVVL 263 (645)
Q Consensus 188 g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~ 263 (645)
+.. +..-...+-.++.. .++ +.+..++.. .+..+..+..++.+.|.+.|+.++|.+++.++... .|+..+
T Consensus 212 ~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 212 NTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred CCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 633 34445556667776 466 666666442 33468888999999999999999999999985433 234444
Q ss_pred HHHHHH------------------------------HHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccC-------
Q 048812 264 WTTLVS------------------------------GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD------- 306 (645)
Q Consensus 264 ~~~li~------------------------------~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~------- 306 (645)
|--++. -+.+.+.++-+.++.. ..|.......-..+....+
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA--TLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCCcchHHHHHHhhccccCchhHHHH
Confidence 433322 1223333333333311 1222221111111111100
Q ss_pred ----------------Cchhh----------------hhhc--------------------cccc---------------
Q 048812 307 ----------------AEFKY----------------KSCA--------------------SIGA--------------- 319 (645)
Q Consensus 307 ----------------~~~~~----------------~a~~--------------------~~~~--------------- 319 (645)
+..++ .+.. ..+.
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 00000 0000 0000
Q ss_pred ----------hhhHHHHHHHHHHc-CCC-----------------CCcHHHHHHHHhhcCcCChhHHHHHHHH--HHHcC
Q 048812 320 ----------LYHGIWVHVYIKKN-QIS-----------------IDNIELAYDLFSEISEKNVYLWTSVIAA--YAMAG 369 (645)
Q Consensus 320 ----------l~~g~~i~~~~~~~-~~~-----------------~~~~~~A~~~f~~~~~~~~~~~~~li~~--~~~~g 369 (645)
+.........+.+. +.. .+..++|...|..........|+.+..+ +...|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCC
Confidence 00000000000000 000 0133345554444333222234444333 35788
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHH
Q 048812 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 370 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
++++|+..|+++... .|+...+..+..++...|+.++|..+++...+ ..|+ ...+..+...+.+.|++++|...
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~---l~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 888998888887553 45555566677778888999999999988874 2344 33344444455566999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 449 ITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 449 ~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+++. ...|+...|..+...+.+.|+.++|+..++++++++|+++..+..++.++...|++++|+..+++..+..
T Consensus 599 ~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 599 LTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9886 6678888999999999999999999999999999999999999999999999999999999999887643
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=8.4e-15 Score=161.88 Aligned_cols=399 Identities=11% Similarity=-0.013 Sum_probs=239.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
++++.|...+...++. .|++..+..+...|.+.|++++|...+++.. +.+...|..+..+|...|++++|+..|.
T Consensus 141 ~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~ 218 (615)
T TIGR00990 141 KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218 (615)
T ss_pred CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8899999999998876 4678888999999999999999999999865 3456689999999999999999999887
Q ss_pred HHhhcC--------chhh---ccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhH
Q 048812 129 YLVTRT--------VLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTM 196 (645)
Q Consensus 129 ~m~~~~--------~~~~---~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 196 (645)
.....+ .++. +......+...++.-+ ++..+|..+.. |........+..-+..-.+ ..|.. ..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 294 (615)
T TIGR00990 219 ASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQ 294 (615)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccch
Confidence 665422 0000 0011122333333322 22233332222 2111111111111111100 01110 001
Q ss_pred HHHHHH---HhcCCChHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHH
Q 048812 197 VSLISA---RTKLRDLEMGKNLHLFLEEST-M-KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSG 270 (645)
Q Consensus 197 ~~ll~~---~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~ 270 (645)
..+... ....+++++|.+.+..+++.+ . +.....++.+...|...|++++|...|++.....| +..+|..+...
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~ 374 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 100000 012244555555555555443 1 22233445555555555555555555555332333 23355555555
Q ss_pred HHhcCCHHHHHHHHHhcccCC---chhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHH
Q 048812 271 YVKSNERDEARRLFDEMVERN---LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLF 347 (645)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~~---~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f 347 (645)
+...|++++|...|++..+.+ ...|..+-..+. ..+++++|...|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~--------------------------------~~g~~~~A~~~~ 422 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF--------------------------------IKGEFAQAGKDY 422 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------------HcCCHHHHHHHH
Confidence 555555555555555554211 111211111111 112445555555
Q ss_pred hhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 048812 348 SEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424 (645)
Q Consensus 348 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 424 (645)
+.... .+...|..+...+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|.+.|+...+ +.|
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p 498 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEK 498 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCC
Confidence 44332 35667888889999999999999999998874 233467888888999999999999999999884 344
Q ss_pred Ch--------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 425 KM--------QHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 425 ~~--------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+. ..++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...|+++.++.+...
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 31 11222233344579999999999885 55564 45788999999999999999999999999877543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=2e-14 Score=158.59 Aligned_cols=313 Identities=15% Similarity=0.018 Sum_probs=211.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
|++..|..+...++.....+ +.....|.......|+++.|...|+++. +.+...|..+...+.+.|++++|+..|+
T Consensus 56 g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred CCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777776665333 3334444455556777777777777764 2345566666666666666666665555
Q ss_pred HHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 129 ~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
++.. ....+...|..+...+.+.|++++|+..++.+...... +...+.. +..+...|+
T Consensus 135 ~Al~--------------------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~ 192 (656)
T PRK15174 135 QAWL--------------------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSR 192 (656)
T ss_pred HHHH--------------------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCC
Confidence 5432 11234567778888888888888888888877665322 2222322 234667788
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHH----HHHH
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDE----ARRL 283 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~----A~~~ 283 (645)
+++|...+..+++....++......+...+.+.|+.++|...|++.....| +...+..+...+.+.|++++ |+..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 888888888877664334444455556778888888888888887544444 56677778888888888875 6777
Q ss_pred HHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHH
Q 048812 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA 363 (645)
Q Consensus 284 ~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~ 363 (645)
|++....+ +.+...+..+..
T Consensus 273 ~~~Al~l~------------------------------------------------------------P~~~~a~~~lg~ 292 (656)
T PRK15174 273 WRHALQFN------------------------------------------------------------SDNVRIVTLYAD 292 (656)
T ss_pred HHHHHhhC------------------------------------------------------------CCCHHHHHHHHH
Confidence 66654322 234567778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCC
Q 048812 364 AYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-QHYGCMVDLLGRAGH 441 (645)
Q Consensus 364 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 441 (645)
.+...|++++|+..+++.... .|+ ......+..++...|++++|...|+.+.+ ..|+. ..+..+..++...|+
T Consensus 293 ~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 293 ALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCC
Confidence 888889999999988888874 444 45566677788888999999888888775 35553 334445677888899
Q ss_pred HHHHHHHHHhC
Q 048812 442 LEESANFITSM 452 (645)
Q Consensus 442 ~~~A~~~~~~m 452 (645)
.++|.+.+++.
T Consensus 368 ~deA~~~l~~a 378 (656)
T PRK15174 368 TSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHH
Confidence 99999888875
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=3.1e-13 Score=149.52 Aligned_cols=415 Identities=10% Similarity=0.038 Sum_probs=290.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII---ENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~ 128 (645)
|+...|...+..+++......+.++ .++..+...|+.++|+..+++...|+...+..+. ..|...|++++|+++|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888888888777522212344 7888888889999999998888766444443333 35555566666665555
Q ss_pred HHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 129 ~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
++.+. - ..|...+..++..|.+.++.++|++.++++... .|+...+..++..+...++
T Consensus 127 kaL~~-------------------d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 127 SSLKK-------------------D-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHhh-------------------C-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 54321 1 123455667788899999999999999998876 5665666444444444566
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhh-----H--HHHHHHHH---------
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL-----W--TTLVSGYV--------- 272 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~-----~--~~li~~~~--------- 272 (645)
..+|.+.++.+++.. +.+...+..++....+.|-...|.++..+ - |+..+ | ...+.-.+
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~--~--p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE--N--PNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh--C--ccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 656999999999886 66777888888999999999999988876 2 22111 1 00111111
Q ss_pred hcCCH---HHHHHHHHhccc-----CCchh-HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHH
Q 048812 273 KSNER---DEARRLFDEMVE-----RNLIS-WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA 343 (645)
Q Consensus 273 ~~g~~---~~A~~~~~~m~~-----~~~~t-~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A 343 (645)
...++ +.|+.-++.+.. |...+ |.. +...-+-.....+++.++
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~----------------------------~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQR----------------------------ARIDRLGALLVRHQTADL 311 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHH----------------------------HHHHHHHHHHHhhhHHHH
Confidence 11222 334444444432 21111 100 011111111223378899
Q ss_pred HHHHhhcCcCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048812 344 YDLFSEISEKN----VYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-----TKPDQVTFIALLSACSHGGLVDEGYDFLS 414 (645)
Q Consensus 344 ~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 414 (645)
.+.|+.+..+. ..+--++..+|...+++++|+.+|++..... ..++......|..++...+++++|..+++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999988532 3455678899999999999999999987643 12334446788999999999999999999
Q ss_pred HhHHhcC----------CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHH
Q 048812 415 KKSRVYN----------IKPK---MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 415 ~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~ 479 (645)
.+.+... -.|+ ...+..++..+.-.|++.+|++.++++ . .+-|...+..+...+...|++.+|+.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9985221 0122 345566788899999999999999998 3 33478899999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 480 ~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++.+..++|++..+...++..+...|+|.+|..+.+...+..
T Consensus 472 ~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 472 ELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999998886643
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=2.6e-14 Score=160.93 Aligned_cols=355 Identities=11% Similarity=0.050 Sum_probs=258.5
Q ss_pred ccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 048812 139 KCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (645)
..|+.++|++++.+... .+...+..+...+.+.|++++|+++|++.++.. +.+...+..+...+...|++++|...
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666666542 344568999999999999999999999988762 23455677788888999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchh
Q 048812 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294 (645)
Q Consensus 216 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t 294 (645)
++.+++.. +.+.. +..+..++...|+.++|...++++....| +...+..+...+...|..++|++.++.... +..
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~- 181 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA- 181 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH-
Confidence 99999874 55566 88899999999999999999998655566 556677788889999999999999987764 211
Q ss_pred HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCC-----CCCcH---HHHHHHHhhcCc-----CChh-HH--
Q 048812 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI-----SIDNI---ELAYDLFSEISE-----KNVY-LW-- 358 (645)
Q Consensus 295 ~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~-----~~~~~---~~A~~~f~~~~~-----~~~~-~~-- 358 (645)
+..-+. ...+...++..+ ..+++ ++|...++.+.. |+.. .+
T Consensus 182 ~~~~l~-----------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 182 EKRDLE-----------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHHH-----------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 000000 000111111111 11122 566666665552 2211 11
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHH
Q 048812 359 --TSVIAAYAMAGHAQKAIDLFLEMEETGTK-PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP--KMQHYGCMV 433 (645)
Q Consensus 359 --~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li 433 (645)
...+.++...|++++|+..|+++.+.+.. |+.. -..+..++...|++++|..+|+++.+.....+ .......|.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11134556779999999999999987632 4432 22246689999999999999999874322111 135567777
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCC-------------C---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 434 DLLGRAGHLEESANFITSMP-IPP-------------D---VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~-~~p-------------d---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
.++...|++++|.++++++. ..| + ...+..+...+...|++++|+.+++++++..|.++..+.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 78899999999999998872 222 2 224556777789999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++.++...|++++|++.+++..+..
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999887644
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.1e-12 Score=126.86 Aligned_cols=410 Identities=13% Similarity=0.127 Sum_probs=279.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHH---HHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEF---LVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFA 125 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 125 (645)
+.+.++.-++.+|...|++-++.+--.|+.. |-...-+-.-++.|-.|.. .+..+|
T Consensus 129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------------------ 190 (625)
T KOG4422|consen 129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------------------ 190 (625)
T ss_pred cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------------------
Confidence 6677777888888888877777665555543 2222222222344444442 223333
Q ss_pred HHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc
Q 048812 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205 (645)
Q Consensus 126 ~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (645)
|.|.+.+ -+|+..| +...+|..||.|.|+-...+.|.++|++-.+...+.+..+||.+|.+.+-
T Consensus 191 -------------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~ 254 (625)
T KOG4422|consen 191 -------------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY 254 (625)
T ss_pred -------------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence 3455544 4454444 67789999999999999999999999999998889999999999988654
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHH----cccCC--CCCChhhHHHHHHHHHhcCCHHH
Q 048812 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL----GRYEI--DEVDVVLWTTLVSGYVKSNERDE 279 (645)
Q Consensus 206 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~----~~m~~--~~~~~~~~~~li~~~~~~g~~~~ 279 (645)
. .++.+..+|+...+.||..|+|+++.+.++.|+++.|++.+ .+|+. .+|...+|.-+|..+.+.++..+
T Consensus 255 ~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 255 S----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred h----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 3 34889999999999999999999999999999998876654 44332 36889999999999999887744
Q ss_pred -HHHHHHhcc--------cC----CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHH
Q 048812 280 -ARRLFDEMV--------ER----NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346 (645)
Q Consensus 280 -A~~~~~~m~--------~~----~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~ 346 (645)
|..++.++. +| |..-+.+.+ +.|.++.+.+.+.++|+.+.... .
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM------------~Ic~~l~d~~LA~~v~~ll~tg~-N---------- 387 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAM------------SICSSLRDLELAYQVHGLLKTGD-N---------- 387 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHH------------HHHHHhhhHHHHHHHHHHHHcCC-c----------
Confidence 455555443 22 223344444 78999999999999998765431 1
Q ss_pred HhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 048812 347 FSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424 (645)
Q Consensus 347 f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 424 (645)
+..|.. ....-|..+..+.++....+.-+.+|+.|.-.-+-|+..+...++.|....+.++--.+++..++ .+|-.-
T Consensus 388 ~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~ 466 (625)
T KOG4422|consen 388 WKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTF 466 (625)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-Hhhhhh
Confidence 111111 12234566777888888899999999999877788999999999999999999888888888887 566544
Q ss_pred ChHHHHHHHHHHHHcC---------CHHH-----HHHHHHh-------C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048812 425 KMQHYGCMVDLLGRAG---------HLEE-----SANFITS-------M-PIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g---------~~~~-----A~~~~~~-------m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 482 (645)
+...-.-+...+++.. ++.. |.++++. | .........+..+--+.+.|..++|-+++.
T Consensus 467 r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~ 546 (625)
T KOG4422|consen 467 RSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLG 546 (625)
T ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHH
Confidence 4444444445555443 1111 1111111 1 122344455566666778899999999998
Q ss_pred HHHhcC---CCCchh--HHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 483 HLTETD---PLNDGA--HVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 483 ~~~~~~---p~~~~~--y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
.++..+ |..+.. ..-|.+.-........|..+++.|...+.
T Consensus 547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 887633 433322 12344444556667788888888866554
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=5.8e-13 Score=147.40 Aligned_cols=388 Identities=13% Similarity=0.066 Sum_probs=253.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhhccCChHHHHHHHccCCCCCcchHHHH---HHHHHhcC
Q 048812 107 WNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLNKCGKLKEVCQLFDKLPNRDVISWNTM---ISCYTSMG 172 (645)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~l---i~~~~~~g 172 (645)
|...|. ..+.|++.+|++.|++..+.+ .++...|+.++|+..+++...|+...+..+ ...|...|
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 444443 357888888888888877643 234466777777777777665544333332 33555667
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHc
Q 048812 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252 (645)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 252 (645)
++++|+++|+++.+... -+...+..++..+...++.++|.+.+..+.+. .|+...+-.++..+...++..+|.+.++
T Consensus 117 dyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 77777777777766531 13445555666666777777777777666655 3333344444444444455555777777
Q ss_pred ccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHH
Q 048812 253 RYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331 (645)
Q Consensus 253 ~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~ 331 (645)
++....| +...+..+..+..+.|-...|.++..+- |+.++-..... ++ .......+
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~--p~~f~~~~~~~-------------------l~--~~~~a~~v 250 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN--PNLVSAEHYRQ-------------------LE--RDAAAEQV 250 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC--ccccCHHHHHH-------------------HH--HHHHHHHH
Confidence 6544455 4555666667777777777776665542 33222111110 00 00111222
Q ss_pred HcCCCC-----C---cHHHHHHHHhhcCc-----CCh-hHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048812 332 KNQISI-----D---NIELAYDLFSEISE-----KNV-YLW----TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393 (645)
Q Consensus 332 ~~~~~~-----~---~~~~A~~~f~~~~~-----~~~-~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 393 (645)
+..... + -++.|..-++.+.. |.. ..| -=.+-++...|++.++++.|+.|...|.+.-..+-
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 222111 1 33444444444332 221 122 23466888999999999999999998866444588
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcC----CCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC-C-------------
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYN----IKPKMQHYGCMVDLLGRAGHLEESANFITSMPI-P------------- 455 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~------------- 455 (645)
..+..+|...+.+++|..+++++....+ ..++......|..+|...+++++|..+++++.- .
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 8999999999999999999999875432 233455568899999999999999999998821 1
Q ss_pred C--CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 456 P--DVS-IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 456 p--d~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
| |-. ....++..+.-.|++.+|++.+++++...|.|+.....+.+++...|+..+|++.++.....
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 2 222 33455666888999999999999999999999999999999999999999999999777654
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=3.7e-12 Score=135.13 Aligned_cols=431 Identities=15% Similarity=0.154 Sum_probs=292.2
Q ss_pred CHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCC------cccHHHHHHHHHHcCChhHHHHH
Q 048812 53 SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE------IKIWNSIIENQLINGYPQEVFAI 126 (645)
Q Consensus 53 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~ 126 (645)
+...|.++.....+.. +.+|.+.+.|.+.|..-|++..+..+...+...+ ..+|--+..+|-..|++++|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3455555555555444 4678888888888888999999888887765332 33577788888889999999999
Q ss_pred HHHHhhcC------------chhhccCChHHHHHHHccCCC--C-CcchHHHHHHHHHhcC----ChHHHHHHHHHHhhC
Q 048812 127 YLYLVTRT------------VLLNKCGKLKEVCQLFDKLPN--R-DVISWNTMISCYTSMG----MYREGLGLLSKMGAE 187 (645)
Q Consensus 127 ~~~m~~~~------------~~~~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g----~~~~A~~~~~~m~~~ 187 (645)
|.+....+ .||.+.|+++.|...|+.+.. | +..+--.|...|+..+ ..+.|..++.+..+.
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 98887744 778888999999988888764 3 3445555566666654 345666666665554
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC-----C
Q 048812 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFL----EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID-----E 258 (645)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~ 258 (645)
- +.|...|..+...+....- ......+..+ ...+-++.+.+.|.+...+...|+++.|...|++.... .
T Consensus 410 ~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 2 3355667666666655433 3335555444 34455677888899999999999999999888774222 1
Q ss_pred CCh------hhHHHHHHHHHhcCCHHHHHHHHHhccc--CCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHH
Q 048812 259 VDV------VLWTTLVSGYVKSNERDEARRLFDEMVE--RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330 (645)
Q Consensus 259 ~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~ 330 (645)
+|. .+--.+...+-..++++.|.+.|..+.+ |+. |++|.+.| | +
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y------Id~ylRl~-------~---------------m 539 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY------IDAYLRLG-------C---------------M 539 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh------HHHHHHhh-------H---------------H
Confidence 222 1222345555667788888888888873 443 23333321 0 0
Q ss_pred HHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc----
Q 048812 331 KKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSH---- 402 (645)
Q Consensus 331 ~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~---- 402 (645)
. ...+...+|...+..... .|...|+-+...|.....+..|.+-|...... ...+|..+..+|.+.|..
T Consensus 540 a---~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 540 A---RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred H---HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 0 111245556666654443 56677777777888888888888877766543 234677777777775542
Q ss_pred --------cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 048812 403 --------GGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSMP--IPPDVSIWSSLLRACRCH 471 (645)
Q Consensus 403 --------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~ 471 (645)
.+..++|++.|.+..+ ..| +...-|.+.-.++..|++.+|.++|.+.. ..-+..+|-.|...|...
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 2356677777777764 344 56666778888888999999999998872 222456788888899999
Q ss_pred CChHHHHHHHHHHHhcC--CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 472 QNVKLAEHAFKHLTETD--PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~--p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|++-.|+++|+..+... .+++.....|..++.+.|+|.+|.+.......
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999888733 34566777889999999999988888776654
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=5.3e-12 Score=122.68 Aligned_cols=420 Identities=14% Similarity=0.132 Sum_probs=260.2
Q ss_pred hhhhHHHHHHhcCChHHHHHHHhhCCC----CC-cccHHHHHHHHHHcCChhHHHHHHHHHhhcC---------------
Q 048812 75 ISTQVFEFLVFTGDLGYAQQIIRQGDE----PE-IKIWNSIIENQLINGYPQEVFAIYLYLVTRT--------------- 134 (645)
Q Consensus 75 ~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------- 134 (645)
+...|...|.......+|+..++-+.+ || ...--.+-..+.+...+.+|+.+|+-.+..-
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 444555667777788888887775432 22 1222234455677778889999888766521
Q ss_pred -chhhccCChHHHHHHHccCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC------------ChhhHHHH
Q 048812 135 -VLLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP------------DEVTMVSL 199 (645)
Q Consensus 135 -~~~~~~g~~~~A~~~f~~m~--~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~t~~~l 199 (645)
..+.+.|.+++|..-|+... .||..+--.|+-++.--|+.++..+.|.+|+.-...| +....+..
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 56778999999999999865 3777665556666677789999999999998643333 33223322
Q ss_pred HH-----HHhcCC--ChHHHHHHHHHHHHhCCCCchh-------------HH--------HHHHHHHHHcCCHHHHHHHH
Q 048812 200 IS-----ARTKLR--DLEMGKNLHLFLEESTMKISGS-------------LL--------NYLVDMYFKCGKIGEAQKLL 251 (645)
Q Consensus 200 l~-----~~~~~~--~~~~a~~~~~~~~~~g~~~~~~-------------~~--------~~li~~y~~~g~~~~A~~~~ 251 (645)
|+ -..+.+ +.+++.-.-..++.--+.|+-. .+ -.-..-|.+.|+++.|.+++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 22 122211 1111111111111111222210 00 01123478999999998877
Q ss_pred cccCCCC-C--ChhhHHHHHHHHHhc-CCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHH
Q 048812 252 GRYEIDE-V--DVVLWTTLVSGYVKS-NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327 (645)
Q Consensus 252 ~~m~~~~-~--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~ 327 (645)
.-+.... + +...-|.-.--|.+- .++..|.+.-+.....|...-..+. ..| ...-..|+++.+...+
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~----nkg-----n~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT----NKG-----NIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh----cCC-----ceeeecCcHHHHHHHH
Confidence 6532221 1 111111111112221 2334444443333322221111110 111 1111122222222222
Q ss_pred HHHH-----------HcCCC---CCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048812 328 VYIK-----------KNQIS---IDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390 (645)
Q Consensus 328 ~~~~-----------~~~~~---~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 390 (645)
...+ ..|+. .+++++|+..|-.+.. .++...-.+.+.|-...+..+|++++.+.... ++.|.
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 2211 11221 2378888888866543 56777778888999999999999999766553 45567
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 048812 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRAC 468 (645)
Q Consensus 391 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~ 468 (645)
..+..|...|-+.|+-.+|.+++-.-. ..-| +.++...|..-|....-+++|...|++. -++|+..-|..++..|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 788888899999999999998876533 3444 7888889999999999999999999997 5789999999999886
Q ss_pred -HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 469 -RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 469 -~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
++.|++++|..+++......|.+....-.|+.++...|-
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 568999999999999999999999988889998888774
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.6e-10 Score=123.02 Aligned_cols=448 Identities=13% Similarity=0.059 Sum_probs=243.7
Q ss_pred CCHHHHHHHHHHHHHh--CCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHH
Q 048812 52 SSIDEFERIHSHLITT--NLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLY 129 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 129 (645)
++...+..++..+++. ..+||+.+.-. ..+.++|+.+.|+..|.+..+-|+..-++++....-.-.+
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~--------- 246 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF--------- 246 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc---------
Confidence 5666666666664443 23455543322 4455667777777777666544443333333221110000
Q ss_pred HhhcCchhhccCChHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CChhhHHHHHHHHh
Q 048812 130 LVTRTVLLNKCGKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS--PDEVTMVSLISART 204 (645)
Q Consensus 130 m~~~~~~~~~~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~ 204 (645)
.....+..+..++.+.- ..|++..|.|..-|.-.|++..+..+...+...-.. .-...|-.+.+++-
T Consensus 247 --------~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 247 --------NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred --------cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 01122333333333322 235556666666666666666666666655543211 01224555666666
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcC----CHHH
Q 048812 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSN----ERDE 279 (645)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g----~~~~ 279 (645)
..|+++.|...|-+..+..-..-...+--|..+|.+.|+++.|...|+.+....| +..+...|...|+..+ ..+.
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 6666666666665555443111122223355666666666666666665433344 3444555555555443 3445
Q ss_pred HHHHHHhcccCC---chhHHHHHHhhhccCCchhhhhhcccc-------chhhHHHHHHHHHHcCCCCCcHHHHHHHHhh
Q 048812 280 ARRLFDEMVERN---LISWTLMISGMLNQDAEFKYKSCASIG-------ALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349 (645)
Q Consensus 280 A~~~~~~m~~~~---~~t~~~ll~~~~~~~~~~~~~a~~~~~-------~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~ 349 (645)
|..++.+..++. ...|-.+-..|-+..-..++.+..... .. ....+...+.-..+..+.++.|...|..
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 555554444222 222222222222222111111110000 00 1112222222222333356666666654
Q ss_pred cCc-------CCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 048812 350 ISE-------KNV------YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-VTFIALLSACSHGGLVDEGYDFLSK 415 (645)
Q Consensus 350 ~~~-------~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~ 415 (645)
... +|. .+--.+...+-..++++.|.+.|...... .|.- ..|..++..-...+...+|...+..
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 332 222 22223556666778999999999999875 5663 4455554333345777888888888
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH----hCCCCCCHHHHHHHHHHHHh------------cCChHHHHH
Q 048812 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT----SMPIPPDVSIWSSLLRACRC------------HQNVKLAEH 479 (645)
Q Consensus 416 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~pd~~~~~~ll~a~~~------------~g~~~~a~~ 479 (645)
... ....++..++-+.+.+.+...+.-|.+-|. +....+|+.+.-+|.+.|.. .+..++|++
T Consensus 556 ~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 556 ALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 875 334456666667777877777777777444 33344788887777776542 234688889
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 480 ~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
+|.+++..+|.|..+-+-++-+++..|+|.+|..+|.+.++...
T Consensus 634 ~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 634 LYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 99999999998877777788889999999999999999988664
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=2.4e-11 Score=128.33 Aligned_cols=336 Identities=14% Similarity=0.161 Sum_probs=223.9
Q ss_pred CchhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChH
Q 048812 134 TVLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210 (645)
Q Consensus 134 ~~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (645)
|..+++ |++++|.+++.++.. ++...|-+|...|-+.|+.++++..+-..-... +-|..-|..+-.-..+.|++.
T Consensus 147 N~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 344555 788888888777653 466778888888888888887776654443321 224456777777777788888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC--ChhhHHH----HHHHHHhcCCHHHHHHHH
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV--DVVLWTT----LVSGYVKSNERDEARRLF 284 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~--~~~~~~~----li~~~~~~g~~~~A~~~~ 284 (645)
.|.-.+..+++.. +++....---+.+|-+.|+...|..-|.++....| |..-.-. ++..|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888776 45555555566777788888888777776433333 1111112 233344444445554444
Q ss_pred HhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHH
Q 048812 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~ 364 (645)
+.... +.+ ..-+...+|.++..
T Consensus 304 e~~~s--------------~~~--------------------------------------------~~~~~ed~ni~ael 325 (895)
T KOG2076|consen 304 EGALS--------------KEK--------------------------------------------DEASLEDLNILAEL 325 (895)
T ss_pred HHHHh--------------hcc--------------------------------------------ccccccHHHHHHHH
Confidence 43221 000 01234557788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTF--------------------------IALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--------------------------~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
|.+...++.|......+......||..-+ .-+.-++.+....+....+.....
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~- 404 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV- 404 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH-
Confidence 88888899999888888762222222111 112222333333333333333333
Q ss_pred hcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 419 VYNIKP--KMQHYGCMVDLLGRAGHLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 419 ~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
...+.| +...|.-+.++|...|++.+|.+++..+- ..-+...|--+...|...|..+.|.+.+++++...|++..
T Consensus 405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 344334 57889999999999999999999999882 2235779999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 494 ~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
+-..|..+|...|+.++|.+++..|..-+-+..+++.|
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999886444333345555
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=3e-13 Score=134.30 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDL 435 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 435 (645)
+..++..+...|+++++..++++..... .+++...|..+...+.+.|+.++|.+.+++..+ ..|+ ......++..
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWL 189 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHH
Confidence 3444445555555555555555544322 223444455555555556666666666655553 3443 4455555666
Q ss_pred HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 048812 436 LGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 513 (645)
+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...+++.....|+|+.....+++++...|+.++|.+
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66666666555555444 1134566788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 048812 514 IRMKL 518 (645)
Q Consensus 514 ~~~~m 518 (645)
++++.
T Consensus 270 ~~~~~ 274 (280)
T PF13429_consen 270 LRRQA 274 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 98765
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=5.1e-09 Score=106.92 Aligned_cols=459 Identities=13% Similarity=0.123 Sum_probs=284.9
Q ss_pred hccccCCChhhHHHHHhhcCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHH
Q 048812 33 KFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNS 109 (645)
Q Consensus 33 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~ 109 (645)
+....-|++..+=-..-.....+.|+.++.+.++.- +.+.. |..+|++...++.|.+++++.. +.+...|-+
T Consensus 371 KALe~iP~sv~LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWit 445 (913)
T KOG0495|consen 371 KALEHIPRSVRLWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWIT 445 (913)
T ss_pred HHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Confidence 334445665544322222345666777777776653 22333 4456777888899999988654 567788887
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhc----C-------------------------------------------------ch
Q 048812 110 IIENQLINGYPQEVFAIYLYLVTR----T-------------------------------------------------VL 136 (645)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~----~-------------------------------------------------~~ 136 (645)
-...--.+|..+....+..+.+.. + ..
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 777667788888777777765540 0 22
Q ss_pred hhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 048812 137 LNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213 (645)
Q Consensus 137 ~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (645)
+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... .+-....|....+..-..||...|+
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 2333444444444443332 23344444444444445555555555555544 1112223333334444456666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhccc--CC
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE--RN 291 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~ 291 (645)
.++..+.+.. +.+..+|-+-+..-.....++.|+.+|.+.....+....|.--+..---.+..++|++++++..+ |+
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 6666655554 33455555555666666666666666665444445555555544444445556666666655442 22
Q ss_pred chhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--C-ChhHHHHHHHHHHHc
Q 048812 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--K-NVYLWTSVIAAYAMA 368 (645)
Q Consensus 292 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~ 368 (645)
..-+-.|+ | ||.. +.+.++.|...|..-.. | .+..|-.+...=-+.
T Consensus 684 f~Kl~lml------------------G------Qi~e-------~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 684 FHKLWLML------------------G------QIEE-------QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hHHHHHHH------------------h------HHHH-------HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 11111111 1 1111 11256777777765543 3 345677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
|..-+|..++++-+..+ +-|..-|...|..=.+.|+.+.|.....+..++ ...+...|..-|.+..+.++-....+.
T Consensus 733 ~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred cchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHH
Confidence 88888888888877653 336777888888888888888888877777754 344566777777777777776666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCc
Q 048812 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528 (645)
Q Consensus 449 ~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 528 (645)
+++-. -|+.+.-++...+....+++.|.+.|.+.+..+|++..+|.-+...+...|.-++-.+++++..... |..|
T Consensus 810 Lkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG 885 (913)
T KOG0495|consen 810 LKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHG 885 (913)
T ss_pred HHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCC
Confidence 66654 5667777778888889999999999999999999999999999999999999999999998876643 5567
Q ss_pred eeEEEECC
Q 048812 529 YSLIEQGG 536 (645)
Q Consensus 529 ~s~i~~~~ 536 (645)
..|.-+..
T Consensus 886 ~~W~avSK 893 (913)
T KOG0495|consen 886 ELWQAVSK 893 (913)
T ss_pred cHHHHHhh
Confidence 78865443
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.2e-10 Score=112.98 Aligned_cols=355 Identities=12% Similarity=0.096 Sum_probs=229.0
Q ss_pred cCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHH
Q 048812 86 TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165 (645)
Q Consensus 86 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li 165 (645)
.|++.+ ++-+..+.+..++..||.+.++-...+.|.++|++-.. +.| +-+..++|.+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~------~k~-------------kv~~~aFN~lI 249 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA------AKG-------------KVYREAFNGLI 249 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH------hhh-------------eeeHHhhhhhh
Confidence 455544 55555666778899999999776555555555554321 111 24567888887
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHHc
Q 048812 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM----GKNLHLFLEESTMKISGSLLNYLVDMYFKC 241 (645)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 241 (645)
.+-.- ....+++.+|....+.||..|||+++++.++.|+++. +.+++.+|.+.|++|...+|.-+|..+++.
T Consensus 250 ~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 250 GASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 65432 2337899999999999999999999999999998765 557889999999999999999999999998
Q ss_pred CCHHH-HHHHH----cccCC-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccC-CchhHHHHHHhhhccCCch
Q 048812 242 GKIGE-AQKLL----GRYEI-----DEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLNQDAEF 309 (645)
Q Consensus 242 g~~~~-A~~~~----~~m~~-----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~t~~~ll~~~~~~~~~~ 309 (645)
++..+ |..+. +.+.. ..| |..-|..-++.|.+..+.+-|.++-.-.... |..
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~---------------- 389 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK---------------- 389 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh----------------
Confidence 88754 33333 22111 112 5566777788888888888888776554411 110
Q ss_pred hhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 310 ~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
-.|....-...+......-....+++.-...|+.|.. |+..+-..++.+....|+++-.-+++.+|+..|
T Consensus 390 ------~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 390 ------FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 0011100001111111111112256677777777765 666777778888888999988888999988887
Q ss_pred CCCCHHHHHHHHHHHhccC---------cHHH-HHHHHHHhHHh--------cCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 048812 386 TKPDQVTFIALLSACSHGG---------LVDE-GYDFLSKKSRV--------YNIKPKMQHYGCMVDLLGRAGHLEESAN 447 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g---------~~~~-a~~~~~~~~~~--------~~~~p~~~~~~~li~~~~~~g~~~~A~~ 447 (645)
..-+...-.-++.-+++.. ++.. ..++...+.+. ...+-.....++..-++.|.|+.++|.+
T Consensus 464 ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 464 HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHH
Confidence 6555554444444444433 1111 11111111111 1123345667888899999999999999
Q ss_pred HHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 448 FITSM-------PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 448 ~~~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
++.-. +..|......-|+.+-.+.++...|..+++-+...+
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 88655 445555555567777778888888888888886644
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.2e-11 Score=126.66 Aligned_cols=282 Identities=14% Similarity=0.096 Sum_probs=211.6
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHcCCHH-HHH
Q 048812 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM--KISGSLLNYLVDMYFKCGKIG-EAQ 248 (645)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~-~A~ 248 (645)
-+..+|+.+|...... +.-+......+.++|...+++++++.+|+.+.+... --+..+|++.+--+-+.=.+. -|.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568999999995544 333446777788999999999999999999987642 236777877765443322221 233
Q ss_pred HHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHH
Q 048812 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328 (645)
Q Consensus 249 ~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~ 328 (645)
.+.+. ..-...+|-++..+|.-+++.+.|++.|++..+-|.
T Consensus 412 ~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp------------------------------------ 452 (638)
T KOG1126|consen 412 DLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP------------------------------------ 452 (638)
T ss_pred HHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC------------------------------------
Confidence 44433 233678999999999999999999999998876553
Q ss_pred HHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHH
Q 048812 329 YIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVD 407 (645)
Q Consensus 329 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 407 (645)
....+|+-+..-+.....+|.|...|+..+. +.|. -..|..+...|.+.++++
T Consensus 453 ------------------------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 453 ------------------------RFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred ------------------------ccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhh
Confidence 3456676677777777888888888887765 3343 456677778888899999
Q ss_pred HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048812 408 EGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHL 484 (645)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~ 484 (645)
.|.-.|+++.+ +.|. .....++...+-+.|+.|+|++++++. ...| |+..--.-+..+...+++++|+..++++
T Consensus 507 ~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 507 FAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99988888773 7774 566677788888999999999999887 3333 4444444455567778999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 485 ~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++-|+++..|..++.+|-+.|+.+.|..-+.-+-+.+
T Consensus 584 k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 584 KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 99999999999999999999999999988877665543
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.2e-09 Score=105.49 Aligned_cols=286 Identities=15% Similarity=0.157 Sum_probs=192.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHcCC
Q 048812 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM--KISGSLLNYLVDMYFKCGK 243 (645)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 243 (645)
.+|-...+.++++.=.......|++-+...-+....+.-...|+++|+.+|+.+.+... -.|..+|+.++-.--.+..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444445566666666666555544333333333334455666666666666666531 1244455554432222112
Q ss_pred HH-HHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 244 IG-EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 244 ~~-~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
+. -|..+++- ..--+.|...+..-|+-.++.++|...|++..+-|
T Consensus 315 Ls~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN------------------------------- 360 (559)
T KOG1155|consen 315 LSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN------------------------------- 360 (559)
T ss_pred HHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-------------------------------
Confidence 11 23344332 22233444445555555666666666666555443
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 402 (645)
+.....|+.|..-|....+...|++-|+...+- .+-|...|-.|.++|.-
T Consensus 361 -----------------------------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 361 -----------------------------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEI 410 (559)
T ss_pred -----------------------------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHH
Confidence 234577999999999999999999999999885 34478899999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~ 479 (645)
.+...-|.-+|++..+ ++| |...|.+|.+.|.+.+++++|.+.|... ....+...+..|...+-+.++.++|..
T Consensus 411 m~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred hcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999998874 677 5889999999999999999999999887 223355788899999999999999999
Q ss_pred HHHHHHh-------cCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 480 AFKHLTE-------TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 480 ~~~~~~~-------~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
.+++-++ .+|....+-.-|.+-+.+.+++++|.......
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9998887 23333334445778888999999998876554
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=4.2e-10 Score=117.78 Aligned_cols=292 Identities=11% Similarity=0.056 Sum_probs=176.2
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHH
Q 048812 170 SMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248 (645)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 248 (645)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777666554 34332 333444556666777777777777665432222233444466677777777777
Q ss_pred HHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHH
Q 048812 249 KLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327 (645)
Q Consensus 249 ~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~ 327 (645)
..++.+....| +...+..+...+.+.|++++|.+++....+.+..+-..... +. ...+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~-------------------l~--~~a~ 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD-------------------LE--QKAE 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH-------------------HH--HHHH
Confidence 77777555555 55566777777777777777777777776432211100000 00 0000
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHh
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF---IALLSACS 401 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~ 401 (645)
......+......+...+.....++ .+...+..+...+...|+.++|.+++++..+. .||.... ........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhc
Confidence 0001111111123344444444443 47788888889999999999999999998875 3444321 11112233
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS---MPIPPDVSIWSSLLRACRCHQNVKLAE 478 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~pd~~~~~~ll~a~~~~g~~~~a~ 478 (645)
..++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....||...+..+...+.+.|+.++|.
T Consensus 311 ~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45777778877777775433333325566777788888888888888883 355677777778888888888888888
Q ss_pred HHHHHHHh
Q 048812 479 HAFKHLTE 486 (645)
Q Consensus 479 ~~~~~~~~ 486 (645)
+++++.+.
T Consensus 391 ~~~~~~l~ 398 (409)
T TIGR00540 391 AMRQDSLG 398 (409)
T ss_pred HHHHHHHH
Confidence 88887655
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=2e-10 Score=120.75 Aligned_cols=474 Identities=13% Similarity=0.091 Sum_probs=270.1
Q ss_pred ccCCchhHHhhhhccccCCChhhHHHHHhh-c--CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHh
Q 048812 21 RLGLVPKMRISRKFANVCPVSLDVIMVERS-C--SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97 (645)
Q Consensus 21 ~~~~~~~m~~~~~~~~~~p~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~ 97 (645)
...++..++.. |+.|+..||..++.. | |+.+.|- ++..|.-..++-+..+++.++......++.+.+.
T Consensus 9 ptnfla~~e~~----gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 9 PTNFLALHEIS----GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred cchHHHHHHHh----cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----
Confidence 33445556665 999999999888765 6 8888777 9999988877777888888888888888877665
Q ss_pred hCCCCCcccHHHHHHHHHHcCChhH---HHHHHHHHhhc-------------------------C-----chhhccCChH
Q 048812 98 QGDEPEIKIWNSIIENQLINGYPQE---VFAIYLYLVTR-------------------------T-----VLLNKCGKLK 144 (645)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~-------------------------~-----~~~~~~g~~~ 144 (645)
.|...+|+.+..+|.+.|+... ..+.+.....+ + ....-.|.++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 6777788999999988888654 22212222210 0 1111122333
Q ss_pred HHHHHHccCC----------------------------------CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 048812 145 EVCQLFDKLP----------------------------------NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190 (645)
Q Consensus 145 ~A~~~f~~m~----------------------------------~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~ 190 (645)
.+.+++..+| .++..+|.+++.+-.-+|+.+.|..++.+|++.|++
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 3333333222 156667777777777777777777777778777777
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHH
Q 048812 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270 (645)
Q Consensus 191 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~ 270 (645)
.+.+-|-.+|-+ .++...+..+..-|...|+.|+..|+..-+-...+.|....+....+. ...-....+..+..+
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~--~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL--AHGFTAAVRSAACRG 311 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch--hhhhhHHHHHHHhcc
Confidence 777766666644 666777777777777777777777777666655555543332222221 111112222222222
Q ss_pred HHhcCCHHHHHHHHHhcccCCc--hhHHHHHHhhhccCCchhhhhhccc---cchhhHHHHHHHHHHcCCCCC------c
Q 048812 271 YVKSNERDEARRLFDEMVERNL--ISWTLMISGMLNQDAEFKYKSCASI---GALYHGIWVHVYIKKNQISID------N 339 (645)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~~~--~t~~~ll~~~~~~~~~~~~~a~~~~---~~l~~g~~i~~~~~~~~~~~~------~ 339 (645)
..|.+.++.-..+-+ .+-..++.|+-... ..++-|..+ |.-+...++-+.+...-+... .
T Consensus 312 -------~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~--aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 312 -------LLANKRLRQNLRKSVIGSTKKLFLLGTDILE--AIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred -------cHhHHHHHHHHHHHHHHHhhHHHHhccccch--HHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 222222221110000 00001111111000 000222111 222223333333332221111 2
Q ss_pred HHHHHHHHhhcCcCChh-HHHHHHHHHHH---cCCHHHHHHHHHHHHH----------------cCCCC-------CHHH
Q 048812 340 IELAYDLFSEISEKNVY-LWTSVIAAYAM---AGHAQKAIDLFLEMEE----------------TGTKP-------DQVT 392 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~----------------~g~~p-------d~~t 392 (645)
-+.+.+.|.+...++.. .++ .-.+... ..+..+..++....+. .-..| -...
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 23456667666655432 222 2222222 1122222222221110 00111 1122
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHH
Q 048812 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP-----IPPDVSIWSSLLRA 467 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~pd~~~~~~ll~a 467 (645)
-+.++..|++.-+..++...-+... ++-+ .-.|..||+.+....++++|..+.++.. +.-|..-+..+.+-
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 3455566666666666654433333 2111 2678999999999999999999999873 34566778889999
Q ss_pred HHhcCChHHHHHHHHHHHhc---CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 048812 468 CRCHQNVKLAEHAFKHLTET---DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525 (645)
Q Consensus 468 ~~~~g~~~~a~~~~~~~~~~---~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 525 (645)
..+++....+..+++++.+. .|.......-+.+.-+..|+.+...++.+-+...|+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999872 24334555667888888999999999999999988765
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.40 E-value=8.6e-09 Score=109.41 Aligned_cols=427 Identities=16% Similarity=0.155 Sum_probs=266.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHh---hCCCCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR---QGDEPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
|++++|..+...+++.. +.....|..|-..|-..|+.+++...+- +..+.|...|-.+..-..+.|.+.+|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 89999999999999987 5677889999999999999999987764 3456677889999999999999999999999
Q ss_pred HHhhcC-----------chhhccCChHHHHHHHccCCC--C---------------------------------------
Q 048812 129 YLVTRT-----------VLLNKCGKLKEVCQLFDKLPN--R--------------------------------------- 156 (645)
Q Consensus 129 ~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~--~--------------------------------------- 156 (645)
++++.+ .+|-+.|+...|..-|.++-+ |
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 998854 677778887777766665532 1
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----------------------hhhHH----HHHHHHhcCC
Q 048812 157 ---DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD----------------------EVTMV----SLISARTKLR 207 (645)
Q Consensus 157 ---~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------------~~t~~----~ll~~~~~~~ 207 (645)
+...+|.++..|.+...++.|+.....+.....++| ...|. -+.-++...+
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 112344455555555555666555555544111111 11111 1112233444
Q ss_pred ChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 048812 208 DLEMGKNLHLFLEEST--MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV--DVVLWTTLVSGYVKSNERDEARRL 283 (645)
Q Consensus 208 ~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~--~~~~~~~li~~~~~~g~~~~A~~~ 283 (645)
..+....+.....+.. +.-++..+.-+.++|...|++.+|.++|..+...++ +...|--+..+|...|.+++|++.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 4455555555555555 334566777888888899999999998887543333 567888888999999999999999
Q ss_pred HHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCCh--------
Q 048812 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNV-------- 355 (645)
Q Consensus 284 ~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~-------- 355 (645)
|+.....++.++..-++ ++... ...++.++|.+.+..+..||.
T Consensus 472 y~kvl~~~p~~~D~Ri~-------------------------Lasl~----~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARIT-------------------------LASLY----QQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHhcCCCchhhhhh-------------------------HHHHH----HhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 88887433322222220 00000 112367788888887766552
Q ss_pred ----hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-----------------CHHHHHHHHHHHhccCcHHHH
Q 048812 356 ----YLWTSVIAAYAMAGHAQKAIDLFLEMEETG-----TKP-----------------DQVTFIALLSACSHGGLVDEG 409 (645)
Q Consensus 356 ----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p-----------------d~~t~~~ll~a~~~~g~~~~a 409 (645)
..--.....|.+.|+.++=+..-.+|...+ +-| ...+...++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 112233456777888877666666665432 111 111222222222222221111
Q ss_pred HHHHH-----HhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHhcCCh
Q 048812 410 YDFLS-----KKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSMP-----IPPDV---SIWSSLLRACRCHQNV 474 (645)
Q Consensus 410 ~~~~~-----~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~pd~---~~~~~ll~a~~~~g~~ 474 (645)
.+... ......++.-+ -..+.-++..+++.+++++|+.+...+- ..++. ..=...+.++...+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 11000 01111223222 2345678889999999999999988762 22222 1234455667788999
Q ss_pred HHHHHHHHHHHhc-----CCCCchhHHHHHHHHHHcCCc
Q 048812 475 KLAEHAFKHLTET-----DPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 475 ~~a~~~~~~~~~~-----~p~~~~~y~~l~~~~~~~g~~ 508 (645)
..|....+.++.. +|.-...|++..+...+.|+-
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR 721 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886 666666677666666665543
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=6.2e-10 Score=115.89 Aligned_cols=286 Identities=10% Similarity=0.043 Sum_probs=151.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHcCCHHHHH
Q 048812 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS--LLNYLVDMYFKCGKIGEAQ 248 (645)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~ 248 (645)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.+.+.+..+.+. .|+.. ........+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777666654432111 223333344446777788888877777664 33332 2223356777788888888
Q ss_pred HHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHH
Q 048812 249 KLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327 (645)
Q Consensus 249 ~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~ 327 (645)
..++.+....| +......+...|.+.|++++|.+++..+.+....+-...-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~---------------------------- 225 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA---------------------------- 225 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH----------------------------
Confidence 88877555555 5666777778888888888888888777644332100000
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 407 (645)
++ -..+|..++.......+.+...++++...+. .+.+......+..++...|+.+
T Consensus 226 -----------------~l-------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 226 -----------------ML-------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred -----------------HH-------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 00 0001222222222223333334444443221 2234445555555555555555
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048812 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLT 485 (645)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 485 (645)
+|.+++++..+ ..|+.... ++.+....++.+++.+.+++. ...| |+..+.++...|...+++++|.+.|++++
T Consensus 281 ~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555442 12232111 111122335555555555554 2233 33445556666666666666666666666
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 486 ~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+..|++ ..|..|..++.+.|+.++|.+++++-
T Consensus 356 ~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 356 KQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred hcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666654 44556666666666666666666544
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=7.1e-11 Score=121.14 Aligned_cols=183 Identities=16% Similarity=0.191 Sum_probs=156.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
....+|-++...|.-+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+... ..++.+|++
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnA 491 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNA 491 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHH
Confidence 4578999999999999999999999999987 566 57888888888888899999999998766 456667765
Q ss_pred ---HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 432 ---MVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 432 ---li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
|.-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.|+|+.+++++..++|.++-.-+..+.++...+
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 556799999999999999987 6777 56677888888999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHc
Q 048812 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568 (645)
Q Consensus 507 ~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~ 568 (645)
++++|.+.++++++. -|+-.-++..+.++.++|...
T Consensus 572 ~~~eal~~LEeLk~~--------------------------vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 572 RYVEALQELEELKEL--------------------------VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred chHHHHHHHHHHHHh--------------------------CcchHHHHHHHHHHHHHHccc
Confidence 999999999999872 245555677777777777644
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.5e-09 Score=107.34 Aligned_cols=386 Identities=13% Similarity=0.101 Sum_probs=237.0
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCC-cccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhhccCChHH
Q 048812 80 FEFLVFTGDLGYAQQIIRQGD--EPE-IKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLNKCGKLKE 145 (645)
Q Consensus 80 l~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~g~~~~ 145 (645)
-+-|-+.|.+++|++.+.... .|| .+-|.....+|...|+++++++.-.+.++.+ ..+-..|++++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 345778899999999999875 577 7779999999999999999999988888866 22233455555
Q ss_pred HHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHH---------HhhCC--CCCChhhHHHHHHHHhcCCChHHHHH
Q 048812 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK---------MGAEG--VSPDEVTMVSLISARTKLRDLEMGKN 214 (645)
Q Consensus 146 A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~---------m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~ 214 (645)
|.. -+|-.++..++..+.-..-+.+++++ |.+.+ +-|+.....+....+...-..
T Consensus 202 al~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~----- 267 (606)
T KOG0547|consen 202 ALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP----- 267 (606)
T ss_pred HHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc-----
Confidence 532 23445555555554443344444433 22112 335555444544443221000
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcC-CHHHHHHHHcc--------cCCCCCChh------hHHHHHHHHHhcCCHHH
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCG-KIGEAQKLLGR--------YEIDEVDVV------LWTTLVSGYVKSNERDE 279 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~--------m~~~~~~~~------~~~~li~~~~~~g~~~~ 279 (645)
.+...+-..|...-..+=..|.... .+..|...+.+ ....+.|.. +...-..-+.-.|+.-.
T Consensus 268 ---~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 268 ---LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ---cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 0000000111111111111111100 12222222111 000011111 11111122334566677
Q ss_pred HHHHHHhcccCCc--hh-HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cC
Q 048812 280 ARRLFDEMVERNL--IS-WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EK 353 (645)
Q Consensus 280 A~~~~~~m~~~~~--~t-~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~ 353 (645)
|...|+.....+. .. |--+-..|.+. ++-++-++.|+... ..
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~--------------------------------~~~~~~~~~F~~A~~ldp~ 392 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADE--------------------------------NQSEKMWKDFNKAEDLDPE 392 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhh--------------------------------hccHHHHHHHHHHHhcCCC
Confidence 7777776653222 11 22222223222 24455555555443 34
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
|..+|..-...+.-.+++++|+.=|++.+. +.|+ ...|.-+-.+..+.+.++++...|++.+++ +..-+++|+-.
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~f 468 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLF 468 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHH
Confidence 667787777888888999999999999887 4554 567777777778899999999999999975 44457889999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPPD---------VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~pd---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
...+...+++++|.+.++.. .+.|+ +.+-.+++-.-.+ +|+..|+.+++++++++|....+|..|..+-
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 99999999999999999875 44443 2233333333233 8999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHH
Q 048812 503 AKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~ 519 (645)
...|+.++|+++|++-.
T Consensus 548 lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 548 LQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99999999999998753
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=1.3e-09 Score=113.58 Aligned_cols=280 Identities=13% Similarity=0.108 Sum_probs=206.9
Q ss_pred ccCChHHHHHHHccCCCC--C-cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHH--HHHHHHhcCCChHHHH
Q 048812 139 KCGKLKEVCQLFDKLPNR--D-VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV--SLISARTKLRDLEMGK 213 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~~--~-~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~ 213 (645)
-.|+++.|++.+...++. + ...|-.......+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 358888888888876643 2 233333344557899999999999999875 56654333 3356778899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-Chh--------hHHHHHHHHHhcCCHHHHHHHH
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVV--------LWTTLVSGYVKSNERDEARRLF 284 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~--------~~~~li~~~~~~g~~~~A~~~~ 284 (645)
+.++.+.+.. +.++.+...+...|.+.|++++|.+++..+..... +.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999887 66788899999999999999999999988543322 111 2222222222222233333333
Q ss_pred HhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHH
Q 048812 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~ 364 (645)
+...+. .+.+......+..+
T Consensus 253 ~~lp~~------------------------------------------------------------~~~~~~~~~~~A~~ 272 (398)
T PRK10747 253 KNQSRK------------------------------------------------------------TRHQVALQVAMAEH 272 (398)
T ss_pred HhCCHH------------------------------------------------------------HhCCHHHHHHHHHH
Confidence 332210 02466778889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 443 (645)
+...|+.++|..++++..+. .||... .++.+....++.+++.+..+...+. .| |...+.++..++.+.|+++
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999998874 555522 2334444669999999999988864 45 4667889999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 444 ESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 444 ~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
+|.+.|+.. ...|+...+..|...+...|+.++|..++++.+.+-
T Consensus 346 ~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 346 EASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999987 778999999999999999999999999999998743
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=4.6e-09 Score=103.41 Aligned_cols=377 Identities=10% Similarity=0.070 Sum_probs=270.0
Q ss_pred cCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 048812 140 CGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216 (645)
Q Consensus 140 ~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (645)
.+++..|+.+|++... +++..|---+..=.++.+...|..++++.+..=...|.. |--.+-.=...|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 4566778888887653 677788888888888999999999999887652222332 333333445678999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhccc--CCchh
Q 048812 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE--RNLIS 294 (645)
Q Consensus 217 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~t 294 (645)
..-.+. +|+...|++.|+.=.+-..++.|+.++++..+..|++.+|--...-=-++|...-|..+|+...+ .|...
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 887754 79999999999999999999999999999888899999998888888889999999998887652 12111
Q ss_pred HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC-------------------cHHHHHH-----HHhhc
Q 048812 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------------------NIELAYD-----LFSEI 350 (645)
Q Consensus 295 ~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~-------------------~~~~A~~-----~f~~~ 350 (645)
-..+..+|++ --......+.++.++.+.+..--... .++++.- -++.+
T Consensus 243 ~e~lfvaFA~--------fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 243 AEILFVAFAE--------FEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 2222222221 11122234445555555554432221 2222221 12222
Q ss_pred Cc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hccCcHHHHHHHHHHhH
Q 048812 351 SE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-------VTFIALLSAC---SHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 351 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~ 417 (645)
.. -|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=.+| ....+++.+.++++...
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22 25567888888888889999999999999875 66632 1233332333 35688999999999888
Q ss_pred HhcCCCCC-hHHHHHHHHHH----HHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 418 RVYNIKPK-MQHYGCMVDLL----GRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 418 ~~~~~~p~-~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
+ +.|. ..++.-+--+| .|+.++..|.+++... |.-|...++...|.--.+.++++....++++.++..|.+
T Consensus 394 ~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 394 D---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred h---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 4 5564 55555554444 5788999999999775 788999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 492 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
..++.-.+..-...|+++.|..+++...++...-.|..-|
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999999999999887766444444444
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=2.2e-12 Score=90.37 Aligned_cols=50 Identities=38% Similarity=0.624 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (645)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
No 45
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=4.2e-12 Score=88.93 Aligned_cols=50 Identities=32% Similarity=0.600 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 402 (645)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=7e-08 Score=98.83 Aligned_cols=398 Identities=12% Similarity=0.113 Sum_probs=300.7
Q ss_pred HHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-------chhhccCChHHHHHHHccCCC---CCc
Q 048812 92 AQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-------VLLNKCGKLKEVCQLFDKLPN---RDV 158 (645)
Q Consensus 92 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~g~~~~A~~~f~~m~~---~~~ 158 (645)
=.+++.+.. +.++..|-..+ .....+.|+-++.+..+.. ..|++..-++.|.+++++..+ .+.
T Consensus 365 K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~ 440 (913)
T KOG0495|consen 365 KKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDR 440 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCh
Confidence 345555543 34555675544 4456777888998888743 567788888999999887653 577
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHH----HhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--chhHHH
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSK----MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI--SGSLLN 232 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~ 232 (645)
..|-+-...=-++|+.+...++..+ +...|+..|...|..=..+|-..|..-.+..+....+..|++. -..+|+
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 7888777777788998888887765 4567999999999998899999999999999999888888754 346788
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhccc--CCc-hhHHHHHHhhhccCCc
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVE--RNL-ISWTLMISGMLNQDAE 308 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~t~~~ll~~~~~~~~~ 308 (645)
.-...+.+.+.++-|+.+|.......| +...|...+..=-..|..++-..+|++... |.. +-|-.
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM----------- 589 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLM----------- 589 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHH-----------
Confidence 888899999999999999987433344 677888888877788999999999988762 222 11211
Q ss_pred hhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 309 ~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
..+.....+++..|+.++...-+ .+...|-+-+.....+..+++|..+|.+...
T Consensus 590 ---------------------~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 590 ---------------------YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred ---------------------HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 11222222355566655554433 3567788888888899999999999998876
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHH
Q 048812 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWS 462 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~ 462 (645)
..|+...|.--+..-.-.+++++|.+++++..+. -|+ ...|-.+.+.+-+.++++.|.+.+..- . .+-.+..|-
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl 723 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL 723 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH
Confidence 5677777777676677788999999999888864 354 567888888999999999999888764 3 334567898
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEE
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 532 (645)
.|..-=-+.|++-+|..++++..-.+|.++..|...+.+-.+.|+.+.|..+..+..+.- |..|.-|.
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 888888888999999999999999999999999999999999999999998877665432 33455554
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=3.9e-08 Score=97.02 Aligned_cols=179 Identities=11% Similarity=0.097 Sum_probs=140.3
Q ss_pred hhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhh
Q 048812 73 PQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLN 138 (645)
Q Consensus 73 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~ 138 (645)
...|-.-..-=-..+++..|+.+|++.. .++...|---+..=.++.....|..++++.+..- .|--
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3334333333345678889999999876 5677889888888899999999999999887732 3444
Q ss_pred ccCChHHHHHHHccCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 048812 139 KCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~--~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (645)
..|++..|+++|++-. +|+..+|++.|..=.+....+.|..+|++.+-. .|+..+|.-..+-=.+.|....+.+++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6799999999999854 699999999999999999999999999998864 599999988888888899999999999
Q ss_pred HHHHHh-CC-CCchhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 217 LFLEES-TM-KISGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 217 ~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
..+++. |- ..+...+.+....=.++..++.|.-+|.-
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988764 21 12334555555555667778888888764
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.6e-08 Score=102.08 Aligned_cols=427 Identities=12% Similarity=0.030 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhh--CCCCCcccHHHHHHHHHHcCChhHHHHHHHHHh
Q 048812 54 IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ--GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131 (645)
Q Consensus 54 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (645)
...|.-+-+.+...+ -|+.-.--+..+|.-.|+++.|..+... +...|..+.......+.+...+++|+.++....
T Consensus 32 y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~ 109 (611)
T KOG1173|consen 32 YKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGH 109 (611)
T ss_pred hhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333444444443333 4455555566777777778777777653 456777777777777777788888887777321
Q ss_pred hc------------------------------------CchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhc-CCh
Q 048812 132 TR------------------------------------TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM-GMY 174 (645)
Q Consensus 132 ~~------------------------------------~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~-g~~ 174 (645)
.. +..|......+.|+..|.+....|+..+.++..--... =-.
T Consensus 110 ~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~ 189 (611)
T KOG1173|consen 110 VETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTA 189 (611)
T ss_pred hhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcch
Confidence 10 03333344455555555544433443333322111100 000
Q ss_pred HHHHHHHHHHhhC-CCCCChhhHHHHHHHH-hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHc
Q 048812 175 REGLGLLSKMGAE-GVSPDEVTMVSLISAR-TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252 (645)
Q Consensus 175 ~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 252 (645)
.+-.++|..+--. -..-+....-.+.... ++..+.+ ....-....-.+..-+..+.-...+-+...+++.+..++++
T Consensus 190 ~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~ 268 (611)
T KOG1173|consen 190 QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITE 268 (611)
T ss_pred hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhH
Confidence 1111122110000 0000111111111110 0000000 00000000001223344444555555666677777777766
Q ss_pred ccCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhccc--C-CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHH
Q 048812 253 RYEIDE-VDVVLWTTLVSGYVKSNERDEARRLFDEMVE--R-NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328 (645)
Q Consensus 253 ~m~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~ 328 (645)
.+.... +....+..-|.++...|+..+-..+=.++.+ | ..++|-++--.|.-.|
T Consensus 269 ~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~---------------------- 326 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG---------------------- 326 (611)
T ss_pred HHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc----------------------
Confidence 632222 2444555556666666666555555455542 2 3455554443333222
Q ss_pred HHHHcCCCCCcHHHHHHHHhhcCcC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 048812 329 YIKKNQISIDNIELAYDLFSEISEK---NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405 (645)
Q Consensus 329 ~~~~~~~~~~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 405 (645)
...+|++.|.....- =...|-.....|+-.|..++|+..|...-+. ++-....+.-+..-|...+.
T Consensus 327 ----------k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 327 ----------KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred ----------CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 566777777654432 2467999999999999999999988876653 22233334444556888999
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--------CC-CCHHHHHHHHHHHHhcCChH
Q 048812 406 VDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSMP--------IP-PDVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~-pd~~~~~~ll~a~~~~g~~~ 475 (645)
.+.|.++|.+.. ++.| |+...+-+.-.....+.+.+|..+|+..- -. ....+|+.|..+|++.+.++
T Consensus 396 ~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 396 LKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred HHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 999999998876 5777 46777777777778899999999988751 11 24567899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+|+..+++.+.+.|.++.+|.+++-+|...|+++.|...+.+..
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.28 E-value=1.4e-11 Score=122.49 Aligned_cols=253 Identities=19% Similarity=0.235 Sum_probs=102.5
Q ss_pred hHHHHHHhcCChHHHHHHHhhC-C----CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHcc
Q 048812 78 QVFEFLVFTGDLGYAQQIIRQG-D----EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152 (645)
Q Consensus 78 ~ll~~~~~~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~ 152 (645)
.+..++.+.|++++|.+++++. . +.|..-|..+....... ++.+.|...+++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-----------------------~~~~~A~~ay~~ 69 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-----------------------GDYDEAIEAYEK 69 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----------------------cccccccccccc
Confidence 5577788889999999999543 2 22444455544444334 445555555555
Q ss_pred CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCch
Q 048812 153 LPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST-MKISG 228 (645)
Q Consensus 153 m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 228 (645)
+.. -+...+..++.. ...+++++|++++.+..+. .++...+..++..+...++++.+.+++..+.... .+.+.
T Consensus 70 l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 70 LLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred cccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 543 234456666666 6888999999988877655 3566667778888888899999998888876533 35677
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCC
Q 048812 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307 (645)
Q Consensus 229 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~ 307 (645)
..+..+...|.+.|+.++|.+.|++.....| |...++.++..+...|+.+++.++++...+..
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---------------- 210 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---------------- 210 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC----------------
Confidence 8888888889999999999999988544456 56778888888888888888777776543221
Q ss_pred chhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048812 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387 (645)
Q Consensus 308 ~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 387 (645)
+.|...|..+..+|...|++++|+.+|++.... .+
T Consensus 211 --------------------------------------------~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 211 --------------------------------------------PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp --------------------------------------------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred --------------------------------------------cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 245566788888999999999999999998875 23
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 388 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
.|..+...+..++...|+.++|.++.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 467778888889999999999998877655
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=2e-09 Score=103.56 Aligned_cols=200 Identities=14% Similarity=0.123 Sum_probs=162.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
....+..+...+...|++++|.+.|++..+.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------------------------------ 61 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD------------------------------------------------ 61 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 34567777888888888888888887764322
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
+.+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++...+.
T Consensus 62 ------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 62 ------------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred ------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 2245667788889999999999999999988763 335667778888899999999999999998853
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
.........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++..|.++..+..
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 208 (234)
T TIGR02521 129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWL 208 (234)
T ss_pred cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 222224567778888999999999999999886 3334 46688889999999999999999999999998888888889
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
++.++...|++++|..+.+.+..
T Consensus 209 ~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 209 GIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999888765
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.25 E-value=2.6e-09 Score=111.86 Aligned_cols=252 Identities=14% Similarity=0.017 Sum_probs=174.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHHcCCHHHHHHHHcccCCCCCCh--hhHHHHHHHHHhcCCHHHHH
Q 048812 205 KLRDLEMGKNLHLFLEESTMKISGSL-LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV--VLWTTLVSGYVKSNERDEAR 281 (645)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~~~li~~~~~~g~~~~A~ 281 (645)
..|+++.|++......+.. |++.. +-....++.+.|+.+.|.+.|.+.....|+. ...-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4688999998887776653 33332 3334567778899999999988743334543 23334577778889999998
Q ss_pred HHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHH
Q 048812 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSV 361 (645)
Q Consensus 282 ~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~l 361 (645)
..++.+.+.+ +.+...+..+
T Consensus 174 ~~l~~l~~~~------------------------------------------------------------P~~~~~l~ll 193 (409)
T TIGR00540 174 HGVDKLLEMA------------------------------------------------------------PRHKEVLKLA 193 (409)
T ss_pred HHHHHHHHhC------------------------------------------------------------CCCHHHHHHH
Confidence 8888876443 2345567788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCcHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHH
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC---SHGGLVDEGYDFLSKKSRVYN--IKPKMQHYGCMVDLL 436 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~ 436 (645)
...|.+.|++++|.+++.+..+.++.+.......-..+. ...+..+++.+.+..+.+... ...+...+..++..+
T Consensus 194 ~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l 273 (409)
T TIGR00540 194 EEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL 273 (409)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence 889999999999999999999886543322211111221 223333334445555553211 113788889999999
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHcCCchH
Q 048812 437 GRAGHLEESANFITSM-PIPPDVSI---WSSLLRACRCHQNVKLAEHAFKHLTETDPLND--GAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 437 ~~~g~~~~A~~~~~~m-~~~pd~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~--~~y~~l~~~~~~~g~~~~ 510 (645)
...|+.++|.+++++. ...||... ...........++.+.+++.+++.++..|+++ ....+++.+|.+.|+|++
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred HHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHH
Confidence 9999999999999887 44565542 11222223345788999999999999999998 778899999999999999
Q ss_pred HHHHHHHH
Q 048812 511 MSRIRMKL 518 (645)
Q Consensus 511 a~~~~~~m 518 (645)
|.+.++..
T Consensus 354 A~~~le~a 361 (409)
T TIGR00540 354 AADAFKNV 361 (409)
T ss_pred HHHHHHHh
Confidence 99999853
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.5e-08 Score=95.41 Aligned_cols=310 Identities=15% Similarity=0.134 Sum_probs=181.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHHcCCHHHH
Q 048812 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI---SGSLLNYLVDMYFKCGKIGEA 247 (645)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A 247 (645)
+.++++|+++|-+|.+.. +-+..+-.+|-+-+-+.|..+.|..+|+.+.++.--+ -......|..=|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578899999999999852 2233456678888889999999999999998753111 123445577889999999999
Q ss_pred HHHHcccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHH
Q 048812 248 QKLLGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326 (645)
Q Consensus 248 ~~~~~~m~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i 326 (645)
+.+|..+.. .+--.....-|+..|-...+|++|++.-++..+-+.-+++.-|. +.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------qf 182 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------QF 182 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH------------------------HH
Confidence 999998432 12245567779999999999999999998887666656555552 33
Q ss_pred HHHHHHcCCCCCcHHHHHHHHhhcCcCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048812 327 HVYIKKNQISIDNIELAYDLFSEISEKN---VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403 (645)
Q Consensus 327 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 403 (645)
++.+.......++.+.|..++.+....| +..--.+...+...|+++.|++.++...+.+..--..+...|..+|.+.
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 3344444444445555555555444322 1222223345555666666666666665543222234455555566666
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048812 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483 (645)
Q Consensus 404 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~ 483 (645)
|+.+++..++..+.+ ..+....-..|.+.-....- .+.|...+.+
T Consensus 263 g~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G--------------------------------~~~Aq~~l~~ 307 (389)
T COG2956 263 GKPAEGLNFLRRAME---TNTGADAELMLADLIELQEG--------------------------------IDAAQAYLTR 307 (389)
T ss_pred CCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhC--------------------------------hHHHHHHHHH
Confidence 666666666655553 23333333333333333333 3334444444
Q ss_pred HHhcCCCCchhHHHHHHHH---HHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEE
Q 048812 484 LTETDPLNDGAHVLLANIY---AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541 (645)
Q Consensus 484 ~~~~~p~~~~~y~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 541 (645)
-+...|.- ..+..|++.- +..|++.+...+++.|....++..|.+.--.-+-..|.|
T Consensus 308 Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 308 QLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred HHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 44444432 2222233322 123456666777777766666666655443333334444
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3e-08 Score=97.74 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCM 432 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 432 (645)
..|-..+.+-|+-.++.++|+..|++..+. .|. ...|+.+..-|....+...|.+-++.+++ +.| |-..|-.|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGL 404 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGL 404 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhh
Confidence 345556667788889999999999999885 454 56777778899999999999999999884 666 67899999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
.++|.-.+...=|+-.|++. ..+| |...|.+|...|.+.++.++|++.|+++...+-.+...|+.|+++|.+.++.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999998 5666 788999999999999999999999999999887788999999999999999999
Q ss_pred HHHHHHHHHh
Q 048812 511 MSRIRMKLRD 520 (645)
Q Consensus 511 a~~~~~~m~~ 520 (645)
|...+++-.+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=7.7e-08 Score=93.54 Aligned_cols=296 Identities=9% Similarity=0.008 Sum_probs=176.0
Q ss_pred HHHHHHHh--cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 048812 163 TMISCYTS--MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240 (645)
Q Consensus 163 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 240 (645)
.+..|..+ .|+|..|.++..+-.+.+-.| ...|.....+--..||.+.+-+...++.+.--.++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 577888888887766665433 345555666667778888888887777766445666666677777777
Q ss_pred cCCHHHHHHHHcccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccc
Q 048812 241 CGKIGEAQKLLGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319 (645)
Q Consensus 241 ~g~~~~A~~~~~~m~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 319 (645)
.|+.+.|..-.+++.. ...+.........+|.+.|++.+...++.+|.+.+..+-.-+..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~------------------- 226 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR------------------- 226 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-------------------
Confidence 8888877776665432 33467777778888888888888888888887555432111110
Q ss_pred hhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048812 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 396 (645)
.-.+...-+.+.....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|+.. .
T Consensus 227 --le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~ 300 (400)
T COG3071 227 --LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----R 300 (400)
T ss_pred --HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----H
Confidence 0000000000000011111222223333332 234455566667777777777777777777766666522 2
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChH
Q 048812 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 397 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~ 475 (645)
+-.+.+.++.+.=.+..+.-.+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.+
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 2345555666555555555554444444 55666666777777777777777654 56667777777777777777777
Q ss_pred HHHHHHHHHHh
Q 048812 476 LAEHAFKHLTE 486 (645)
Q Consensus 476 ~a~~~~~~~~~ 486 (645)
+|.++.++.+.
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 77777666654
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.19 E-value=3.2e-09 Score=111.94 Aligned_cols=242 Identities=16% Similarity=0.127 Sum_probs=161.1
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCC
Q 048812 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258 (645)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 258 (645)
.++-.|...|+.||.+||.++|.-|+..|+++.|- +|..|.-..++.+..+++.++.+....++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 45667777888888888888888888888888887 8888887777888888888888888777765443 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHh-cccCCchhHHHHHHhhhccC-----Cchhh---------hhhccccchhhH
Q 048812 259 VDVVLWTTLVSGYVKSNERDEARRLFDE-MVERNLISWTLMISGMLNQD-----AEFKY---------KSCASIGALYHG 323 (645)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~t~~~ll~~~~~~~-----~~~~~---------~a~~~~~~l~~g 323 (645)
|...+|+.|..+|.+.|+... ++..++ |. .+...+..+| +.|-. +...+.-.+..-
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe--------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLE--------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHH--------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 667788888888888887654 222222 11 0000011111 00000 000011111111
Q ss_pred HHHHHHHHHc--------------------CCCCCcHHHHHHHHhhcCc-CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048812 324 IWVHVYIKKN--------------------QISIDNIELAYDLFSEISE-KNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382 (645)
Q Consensus 324 ~~i~~~~~~~--------------------~~~~~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 382 (645)
+.+.+.+++. -.....+++-...-..... ++..+|.+.+..-...|+.+.|..++.+|.
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2222222222 2222234444433333333 889999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 048812 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 383 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 443 (645)
+.|++.+..-|-.||-+ .++...+..+.+.|. ..|+.|+.+|+.-.+-.+...|...
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhcchhhh
Confidence 99999998888888866 778878888888777 7899999999988877777755533
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=8.3e-08 Score=94.00 Aligned_cols=394 Identities=13% Similarity=0.168 Sum_probs=262.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcC-------------chhhccCChHHHHHHHc----cCCCCC----cchHHHHHHH
Q 048812 109 SIIENQLINGYPQEVFAIYLYLVTRT-------------VLLNKCGKLKEVCQLFD----KLPNRD----VISWNTMISC 167 (645)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~~g~~~~A~~~f~----~m~~~~----~~~~n~li~~ 167 (645)
.+..-|.-+....+|+..|+-+++.. +.|.+...+.+|.+.++ +.|.-+ +-..|.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34556666777889999998887732 67778888999998775 333222 2345566667
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------------CchhHHHHHH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK------------ISGSLLNYLV 235 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~li 235 (645)
+.+.|+++.|+..|+...+. .||-.+-..|+-++...|+.++.++.|..++..... |+....|--|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999988776 688877666666667789999999999999865322 3333333222
Q ss_pred -----HHHHHcCCHHHHHHHH-cccCC----CCCChh---hHH------------------HHHHHHHhcCCHHHHHHHH
Q 048812 236 -----DMYFKCGKIGEAQKLL-GRYEI----DEVDVV---LWT------------------TLVSGYVKSNERDEARRLF 284 (645)
Q Consensus 236 -----~~y~~~g~~~~A~~~~-~~m~~----~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~ 284 (645)
.-.-+... ..|.+.. -..+. ..||-. -|. .-...|.++|+++.|++++
T Consensus 364 ~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11222221 1222211 11101 122210 111 1223578999999999999
Q ss_pred HhcccCCchhHHHHHH-----hhhccCCchhhhhhccccchhhHHHHHHHH------------HHc--CCCCCcHHHHHH
Q 048812 285 DEMVERNLISWTLMIS-----GMLNQDAEFKYKSCASIGALYHGIWVHVYI------------KKN--QISIDNIELAYD 345 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~-----~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~------------~~~--~~~~~~~~~A~~ 345 (645)
+-..+.|..|-+..-. .|.+.| .++..+.+.-... -+. .+..+++++|.+
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqgg-----------k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGG-----------KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcc-----------cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 8887666554333221 222222 1122222221111 111 123449999999
Q ss_pred HHhhcCcCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 048812 346 LFSEISEKNVYLWTSV---IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422 (645)
Q Consensus 346 ~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 422 (645)
.|.+....|...-.+| .-.+-..|+.++|++.|-++..- +..+...+..+.+.|-...+..+|++++-+... +
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s---l 587 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS---L 587 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---c
Confidence 9998887776543333 33567789999999999887654 445677888888999999999999999877663 4
Q ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 423 KP-KMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 423 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
.| |+.+.+.|.++|-+.|+-..|.+..-+- . ++-+..+..=|..-|....-.++++..|+++--+.|+-+.--..+.
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA 667 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 55 6899999999999999999999875443 3 3335555555666677777889999999999999997644334455
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 048812 500 NIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~m~~ 520 (645)
.++.+.|++..|..+++..-.
T Consensus 668 sc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 667789999999999988754
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.1e-08 Score=111.30 Aligned_cols=262 Identities=12% Similarity=-0.022 Sum_probs=182.9
Q ss_pred hhhHHHHHHHHhc-----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH---------cCCHHHHHHHHcccCCCC
Q 048812 193 EVTMVSLISARTK-----LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK---------CGKIGEAQKLLGRYEIDE 258 (645)
Q Consensus 193 ~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~m~~~~ 258 (645)
...|...+++-.. .+++++|.+.+.++++.. +.+...+..+..+|.. .+++++|...+++.....
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 3445555555321 234678888888888764 3345556555555442 244788988888754455
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCC
Q 048812 259 V-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337 (645)
Q Consensus 259 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~ 337 (645)
| +...|..+...+...|++++|...|++..+.+.
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--------------------------------------------- 369 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP--------------------------------------------- 369 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------------------------------------
Confidence 5 677888888888899999999999988764332
Q ss_pred CcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 048812 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-VTFIALLSACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 338 ~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 416 (645)
.+...|..+...|...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++++
T Consensus 370 ---------------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 370 ---------------ISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred ---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34556788888999999999999999999885 4543 23334444566689999999999988
Q ss_pred HHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 417 SRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVS-IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 417 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
.+. ..|+ ...+..+...|...|++++|...++++ +..|+.. .++.+...+...| +.|...++++++..-..+.
T Consensus 433 l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 742 2353 556777888999999999999999987 4455544 4555555667777 4888888888773322222
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 494 ~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.+..+..+|+-.|+-+.+..+ +++.+.|
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 233377778888888877777 7776654
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.5e-08 Score=97.42 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=150.4
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
.....+..+...|...|++++|...|++.....| +...+..+...+...|++++|.+.|++..+.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------- 95 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------------- 95 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------
Confidence 3456677788888889999999988887543344 56778888888888999999988887765322
Q ss_pred cCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048812 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384 (645)
Q Consensus 305 ~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 384 (645)
..+...+..+...+...|++++|+..|++....
T Consensus 96 -----------------------------------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 96 -----------------------------------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred -----------------------------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 223455677778888889999999999988764
Q ss_pred CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHH
Q 048812 385 GTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSI 460 (645)
Q Consensus 385 g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~ 460 (645)
...| +...+..+..++...|++++|.+.+.+..+ ..| +...+..+...+...|++++|.+.+++. .. +.+...
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3223 345566677788888999999999988874 234 3567788888899999999999888876 22 335566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+..+...+...|+.+.|..+.+.+....|
T Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 206 LWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 77777788888999999988888776544
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.13 E-value=5.3e-06 Score=85.33 Aligned_cols=271 Identities=14% Similarity=0.197 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHcccCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcc-cCCchhHHHHHHhh
Q 048812 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEID-EVD----VVLWTTLVSGYVKSNERDEARRLFDEMV-ERNLISWTLMISGM 302 (645)
Q Consensus 229 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~t~~~ll~~~ 302 (645)
..|..+.+.|-..|+++.|+.+|++.... -+. ..+|-.-...=.+..+++.|+++.+... -|.... + .|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~----~-~~ 462 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE----L-EY 462 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh----h-hh
Confidence 35667778888888899999888872211 121 2346666666667778888888877764 111100 0 11
Q ss_pred hccCC--------chhh-----hhhccccchhhHHHHHHHHHHcCCCCC--------------cHHHHHHHHhhcCc---
Q 048812 303 LNQDA--------EFKY-----KSCASIGALYHGIWVHVYIKKNQISID--------------NIELAYDLFSEISE--- 352 (645)
Q Consensus 303 ~~~~~--------~~~~-----~a~~~~~~l~~g~~i~~~~~~~~~~~~--------------~~~~A~~~f~~~~~--- 352 (645)
..++. ...+ .---+.|.++..+.++..++...+... .++++.+++++-..
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 11110 0000 233456778888888888888776554 67888888887654
Q ss_pred -CCh-hHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHhHHhcCCCCC
Q 048812 353 -KNV-YLWTSVIAAYAM---AGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC--SHGGLVDEGYDFLSKKSRVYNIKPK 425 (645)
Q Consensus 353 -~~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~ 425 (645)
|++ ..||..+.-+.+ .-+.+.|..+|++..+ |.+|...-+.-|+.|- -.-|....|..+++.... ++.+.
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a 619 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEA 619 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHH
Confidence 554 468877766654 2357899999999988 6777755444444332 235788888888888664 34443
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHHh-cCCC-CchhHHH
Q 048812 426 --MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSS---LLRACRCHQNVKLAEHAFKHLTE-TDPL-NDGAHVL 497 (645)
Q Consensus 426 --~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~---ll~a~~~~g~~~~a~~~~~~~~~-~~p~-~~~~y~~ 497 (645)
...|+..|.--+..=-+.....++++. ..-||...-.. ...--.+.|..++|..++...-+ .+|. ++..|.+
T Consensus 620 ~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~t 699 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDT 699 (835)
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHH
Confidence 455666554322221111222222222 11233332222 22223566777888887777777 3453 3445556
Q ss_pred HHHHHHHcCC
Q 048812 498 LANIYAKAGR 507 (645)
Q Consensus 498 l~~~~~~~g~ 507 (645)
.=+.-.+.|+
T Consensus 700 wk~FEvrHGn 709 (835)
T KOG2047|consen 700 WKEFEVRHGN 709 (835)
T ss_pred HHHHHHhcCC
Confidence 6666667777
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=5.8e-07 Score=91.48 Aligned_cols=433 Identities=13% Similarity=0.122 Sum_probs=233.6
Q ss_pred HHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhh--cC------chh--hccCChHHHH
Q 048812 81 EFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVT--RT------VLL--NKCGKLKEVC 147 (645)
Q Consensus 81 ~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~------~~~--~~~g~~~~A~ 147 (645)
+.+...|++++|.+.-+++. +.|...+..=+-+.++.+++++|+.+.+.-.. .+ ..| .+.+..|+|.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHH
Confidence 44455555555555555543 22334445555555566666666644443332 11 122 3678889998
Q ss_pred HHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 048812 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226 (645)
Q Consensus 148 ~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 226 (645)
..++....-+..+-..-...+-+.|++++|+++|+.+.+.+..- +..--..++.+-... +. ..+......|
T Consensus 100 k~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q~v~~v~ 171 (652)
T KOG2376|consen 100 KTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQSVPEVP 171 (652)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHHhccCCC
Confidence 88885554444455555667788999999999999997765331 111222222221111 11 0111112122
Q ss_pred --chhHHHHHHHHHHHcCCHHHHHHHHccc--------CCCCCC---hh-----hHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 227 --SGSLLNYLVDMYFKCGKIGEAQKLLGRY--------EIDEVD---VV-----LWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 227 --~~~~~~~li~~y~~~g~~~~A~~~~~~m--------~~~~~~---~~-----~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
+-..+-.....+...|++.+|.++++.. .....+ .. .---|.-.+-..|+.++|.+++....
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1122222345567788899888888763 111111 11 12234445667899999999888776
Q ss_pred c---CCchhHHHHHH---hhhccCCchh------h-hhhccccchhhHHH-------HHHHHHHcCCCCCcHHHHHHHHh
Q 048812 289 E---RNLISWTLMIS---GMLNQDAEFK------Y-KSCASIGALYHGIW-------VHVYIKKNQISIDNIELAYDLFS 348 (645)
Q Consensus 289 ~---~~~~t~~~ll~---~~~~~~~~~~------~-~a~~~~~~l~~g~~-------i~~~~~~~~~~~~~~~~A~~~f~ 348 (645)
. +|........+ ++....+-++ + +.|..+...-..+. |.....-..+-.+..+.+++.-.
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2 23221111111 1111111111 0 22222221111111 11111111122335566666666
Q ss_pred hcCcCC-hhHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH--------HhH
Q 048812 349 EISEKN-VYLWTSVIAAYA--MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS--------KKS 417 (645)
Q Consensus 349 ~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~--------~~~ 417 (645)
..+... ...+.+++.... +...+.+|.+++...-+....-..+.....+..-...|+++.|.+++. .+.
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence 555422 233444443332 223477788887777654222224455566667788999999999998 444
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
+ +.-.+.+...++.++.+.++-+.|..++.+. ...+. ..+|.-+..--.++|+.++|...++++.+.+
T Consensus 412 -~--~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 412 -E--AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred -h--hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 2 2334556677888999988866666665543 22222 1233333444456799999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCcee
Q 048812 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530 (645)
Q Consensus 489 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 530 (645)
|++..+.+.++.+|++.. .+.|..+-+ .+++.++..
T Consensus 489 ~~d~~~l~~lV~a~~~~d-~eka~~l~k-----~L~p~~~l~ 524 (652)
T KOG2376|consen 489 PNDTDLLVQLVTAYARLD-PEKAESLSK-----KLPPLKGLK 524 (652)
T ss_pred CchHHHHHHHHHHHHhcC-HHHHHHHhh-----cCCCcccch
Confidence 999999999999998754 455555543 344555444
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=2e-08 Score=104.36 Aligned_cols=241 Identities=18% Similarity=0.208 Sum_probs=171.8
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCC--------CCCChhh-HHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHH
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEI--------DEVDVVL-WTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ 297 (645)
-..+...|..+|...|+++.|..++..... ..+.+.+ .+.+...|...+++++|..+|+++.. +
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~-------i 270 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT-------I 270 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------H
Confidence 344555577777788888877777765211 1223332 33466678888999999888877541 1
Q ss_pred HHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 298 ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
. +.+|..+.+.-..+++.|..+|.+.|++++|...
T Consensus 271 ~---------------------------------------------e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~ 305 (508)
T KOG1840|consen 271 R---------------------------------------------EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEY 305 (508)
T ss_pred H---------------------------------------------HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHH
Confidence 1 1112222223356788889999999999999888
Q ss_pred HHHHHH-----cCC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHHcCCHHH
Q 048812 378 FLEMEE-----TGT-KPDQ-VTFIALLSACSHGGLVDEGYDFLSKKSRVYN--IKPK----MQHYGCMVDLLGRAGHLEE 444 (645)
Q Consensus 378 ~~~m~~-----~g~-~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~ 444 (645)
+++..+ .|. .|.. .-++.+...|...+.+++|..+++...+.+- +.++ ..+|+.|...|-..|++++
T Consensus 306 ~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~e 385 (508)
T KOG1840|consen 306 CERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKE 385 (508)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhH
Confidence 877643 122 2332 3466677789999999999999987775443 2222 4789999999999999999
Q ss_pred HHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCC---chhHHHHHHHHHHcCC
Q 048812 445 SANFITSM---------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTE----TDPLN---DGAHVLLANIYAKAGR 507 (645)
Q Consensus 445 A~~~~~~m---------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p~~---~~~y~~l~~~~~~~g~ 507 (645)
|++++++. +..+. ...++.|..+|.+.++.+.|.++|.+... .+|+. ..+|..|+..|.+.|+
T Consensus 386 a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 386 AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 99999876 11222 45678889999999999999999998876 34544 3567789999999999
Q ss_pred chHHHHHHHHHH
Q 048812 508 LDDMSRIRMKLR 519 (645)
Q Consensus 508 ~~~a~~~~~~m~ 519 (645)
+++|.++.+...
T Consensus 466 ~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 466 YEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999988774
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=9.2e-08 Score=94.92 Aligned_cols=341 Identities=13% Similarity=0.050 Sum_probs=212.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 239 (645)
+-+...-|.++|.+++|++.|.+.++. .|| +..|.....+|...|+|+.+.+--...++.+ +.-+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 445566678889999999999988876 677 6677777778888899988887766666553 222344555566777
Q ss_pred HcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh---------cc--cCCchhHHHHHHhhhccC-C
Q 048812 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE---------MV--ERNLISWTLMISGMLNQD-A 307 (645)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~--~~~~~t~~~ll~~~~~~~-~ 307 (645)
..|++++|+.= +|-.++..+|....-.--+.+++.+ |. ++-+.+-.+.|..|...- +
T Consensus 195 ~lg~~~eal~D-----------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 195 QLGKFDEALFD-----------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred hhccHHHHHHh-----------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 77887776531 1122222222222222222222221 11 122233334443333221 1
Q ss_pred chhh--hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHh-------hcCcCC---------hhHHHHHHHHHHHcC
Q 048812 308 EFKY--KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFS-------EISEKN---------VYLWTSVIAAYAMAG 369 (645)
Q Consensus 308 ~~~~--~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~-------~~~~~~---------~~~~~~li~~~~~~g 369 (645)
..+. ..-+.-++-.....+.....+. ...+..|...+. .-...+ ..+.+.-..-+.-.|
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~---~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGL---EEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhC---chhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 1111 0000111111111111111110 012222222222 111112 112222222334568
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Q 048812 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 370 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
+.-.|.+.|+..+.....++.. |.-+..+|....+.++.++.|++..+ +.| +..+|..=..++.-.+++++|..=
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 8899999999999865444432 76777789999999999999999884 666 477787778888888999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 449 ITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 449 ~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|++. .+.| ++..|-.+.-+..+.+.+++++..|++..+..|..+..|.....++...+++++|.+.++...+..
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9887 5666 456777777777788899999999999999999999999999999999999999999999987644
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.7e-07 Score=88.51 Aligned_cols=280 Identities=15% Similarity=0.174 Sum_probs=178.2
Q ss_pred cCChHHHHHHHhhCCCCCcccHH---HHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCc----
Q 048812 86 TGDLGYAQQIIRQGDEPEIKIWN---SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV---- 158 (645)
Q Consensus 86 ~g~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~---- 158 (645)
..+.++|..+|-+|.+-|..++. ++.+.|.+.|..+.|+.+...... .||.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~----------------------spdlT~~q 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE----------------------SPDLTFEQ 105 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc----------------------CCCCchHH
Confidence 35678888888888766655544 445555555544444444443322 2332
Q ss_pred --chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch----hHHH
Q 048812 159 --ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG----SLLN 232 (645)
Q Consensus 159 --~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~ 232 (645)
.+.-.|..-|...|-++.|..+|..+.+.|. --......|+..|-...+|++|..+-..+.+.+-++.. ..|.
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 2334566778888888999999988887642 23456677888888888999998888888887644432 2344
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhh
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~ 311 (645)
-|...+.-..+++.|..++.+.....| .+..--.+...+...|+++.|.+.++...+.|..-..
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~--------------- 249 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS--------------- 249 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH---------------
Confidence 455556667788888888887444444 4444555667788899999999998888766543211
Q ss_pred hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048812 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391 (645)
Q Consensus 312 ~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 391 (645)
.+-..|..+|.+.|+.++.+..+.++.+....++..
T Consensus 250 --------------------------------------------evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 250 --------------------------------------------EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred --------------------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 234568889999999999999999988764444432
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH---cCCHHHHHHHHHhC
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR---AGHLEESANFITSM 452 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m 452 (645)
..+-.--....-.+.|..+..+-.+ -+|+...+..+|+.-.. .|+..+-..++++|
T Consensus 286 --l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 286 --LMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred --HHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 2222222223334455554444332 37888888888876532 23344444444444
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.02 E-value=1.4e-07 Score=102.80 Aligned_cols=261 Identities=11% Similarity=-0.009 Sum_probs=178.0
Q ss_pred CCcchHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHh---------cCCChHHHHHHHHHHH
Q 048812 156 RDVISWNTMISCYTS-----MGMYREGLGLLSKMGAEGVSPDE-VTMVSLISART---------KLRDLEMGKNLHLFLE 220 (645)
Q Consensus 156 ~~~~~~n~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 220 (645)
.+..+|...+.+-.. .+..++|+++|++..+. .|+. ..|..+..++. ..+++++|...+..++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455667677776432 23467999999999876 5554 34544443332 2345789999999999
Q ss_pred HhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHH
Q 048812 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299 (645)
Q Consensus 221 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll 299 (645)
+.+ +.+...+..+...+...|++++|...|++.....| +...|..+...+...|++++|+..+++..+.+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------ 404 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------ 404 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------
Confidence 886 56778888899999999999999999998655566 5678889999999999999999999988754421
Q ss_pred HhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048812 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379 (645)
Q Consensus 300 ~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 379 (645)
+...+..++..+...|++++|+..++
T Consensus 405 ------------------------------------------------------~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 405 ------------------------------------------------------RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred ------------------------------------------------------ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 11122233444566788999999998
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 048812 380 EMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM----P 453 (645)
Q Consensus 380 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 453 (645)
+..+.. .|+ ...+..+..++...|+.++|...+.++.. ..|+ ....+.+...|.+.| ++|...++.+ .
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 887652 354 34455666677788999999998887663 2444 344455556667666 4666655554 3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 454 ~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
..|...-+..++ +.-+|+-+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 334434443333 5556777766666 7766643
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=5.3e-08 Score=91.71 Aligned_cols=231 Identities=11% Similarity=0.054 Sum_probs=153.0
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc--cCCchhHHHHHHhhhc
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV--ERNLISWTLMISGMLN 304 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~t~~~ll~~~~~ 304 (645)
|..=-+-+..+|.+.|.+.+|.+.|++-....|-+.||-.|-.+|.+..+++.|+.+|.+-. .|..+|+-.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~------- 294 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL------- 294 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh-------
Confidence 33444678899999999999999999865567788899999999999999999999998876 344444321
Q ss_pred cCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048812 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384 (645)
Q Consensus 305 ~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 384 (645)
-+...+-..++.++|+++|+...+.
T Consensus 295 -------------------------------------------------------g~ARi~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 295 -------------------------------------------------------GQARIHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred -------------------------------------------------------hhHHHHHHHHhHHHHHHHHHHHHhc
Confidence 2223333344455555555554443
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HH
Q 048812 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPD--VS 459 (645)
Q Consensus 385 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~pd--~~ 459 (645)
...+......+...|.-.++++-|..+++.+. ..|+ .+.+.|+.+.-.|.-.+++|-++.-|++. -.+|+ ..
T Consensus 320 -~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 320 -HPINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred -CCccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 11223333333344444455555555555544 2332 23344444444444445555554444443 11233 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|-.|.......||+..|.+.|+-.+..+|++..+++.|.-.-.+.|+.++|..+++..++..
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 677777777888999999999999999999999999999999999999999999999887643
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=2.5e-06 Score=89.63 Aligned_cols=424 Identities=16% Similarity=0.085 Sum_probs=243.2
Q ss_pred CCCChhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHH
Q 048812 69 LMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145 (645)
Q Consensus 69 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~ 145 (645)
+.-|+.+|..|.-+...+|+++.+.+.|++... .....|+.+...|.-.|.-..|+.+++.-..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~------------- 385 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK------------- 385 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc-------------
Confidence 345777777777777788888888888876542 2234577777777555554444444433210
Q ss_pred HHHHHccCCCCCcchHHHHHH-HHH-hcCChHHHHHHHHHHhhC--CCC--CChhhHHHHHHHHhcC----C-------C
Q 048812 146 VCQLFDKLPNRDVISWNTMIS-CYT-SMGMYREGLGLLSKMGAE--GVS--PDEVTMVSLISARTKL----R-------D 208 (645)
Q Consensus 146 A~~~f~~m~~~~~~~~n~li~-~~~-~~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~~----~-------~ 208 (645)
.-++|+..+--.|++ .|. +-+..++++++-.+.... |.. .....|..+.-+|... . .
T Consensus 386 ------~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~ 459 (799)
T KOG4162|consen 386 ------KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDAL 459 (799)
T ss_pred ------cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 011243333333333 232 346777887777776652 111 1122333333333221 1 1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI--DEVDVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
..++.+.++..++.+ +.|+.+.-.|.--|+..++++.|.....+... .+-+...|..+.-.+.-.+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 245666777777665 33333333344567888899999888776433 344788999999999999999999999887
Q ss_pred cccCCchhHHHHHHhhhccCCchhh-hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc-----CCh-hHHH
Q 048812 287 MVERNLISWTLMISGMLNQDAEFKY-KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE-----KNV-YLWT 359 (645)
Q Consensus 287 m~~~~~~t~~~ll~~~~~~~~~~~~-~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~-----~~~-~~~~ 359 (645)
....-...++.+. .+..-+.+| ..|..++.+.+--.++.......... +-....+.+..+.- .+. .++.
T Consensus 539 al~E~~~N~~l~~---~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~-~~g~~~~lk~~l~la~~q~~~a~s~sr 614 (799)
T KOG4162|consen 539 ALEEFGDNHVLMD---GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL-DEGKLLRLKAGLHLALSQPTDAISTSR 614 (799)
T ss_pred HHHHhhhhhhhch---hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh-hhhhhhhhhcccccCcccccccchhhH
Confidence 6522111111110 000001111 22333222222222211000000000 00111122221110 111 2222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTK--PDQ------VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
.+..-.+..+ ..+..-.. |...-+. |+. ..+......+...+..++|...+.+..+ +.| ....|.
T Consensus 615 ~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~ 688 (799)
T KOG4162|consen 615 YLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYY 688 (799)
T ss_pred HHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHH
Confidence 2222221111 11100000 2222222 232 2344555677888888999888777663 455 467777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEH--AFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
.....+...|.+++|.+.|... -+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++..|..|+.++-+.|
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 7888899999999999988775 56675 5688999999999999999988 999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 048812 507 RLDDMSRIRMKLRDMG 522 (645)
Q Consensus 507 ~~~~a~~~~~~m~~~~ 522 (645)
+.++|.+.|....+..
T Consensus 769 d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLE 784 (799)
T ss_pred chHHHHHHHHHHHhhc
Confidence 9999999999876654
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.96 E-value=1.2e-06 Score=85.34 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=119.1
Q ss_pred cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 048812 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-------VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 424 (645)
.++.........+|.+.|++.+...+...|.+.|+--|. .++..++.-+.+.+..+.-...|+..-++ .+-
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~ 261 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--LRN 261 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--hhc
Confidence 456666777778888888888888888888887765443 36777777777777666666666666543 344
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C--------------------------------CCCCHHHHHHHHHHHHhc
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-P--------------------------------IPPDVSIWSSLLRACRCH 471 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~--------------------------------~~pd~~~~~~ll~a~~~~ 471 (645)
++..-.+++.-+.++|+.++|.+++.+. + .+-++-.+.+|..-|.++
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN 341 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 5555667777777888888887776543 1 223456777888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+.+.+|...|+..++..|+. ..|..+..+|.+.|+.++|.+++++-.
T Consensus 342 ~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 342 KLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 88888888888888887754 778888888888888888888877654
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.95 E-value=2.9e-07 Score=95.88 Aligned_cols=237 Identities=17% Similarity=0.159 Sum_probs=176.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHHcCCHHHHHHHHcccCC-----CCC--
Q 048812 194 VTMVSLISARTKLRDLEMGKNLHLFLEES-----TM-KISG-SLLNYLVDMYFKCGKIGEAQKLLGRYEI-----DEV-- 259 (645)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~-- 259 (645)
.|...+...|...|+++.|.++++..++. |. .|.. ...+.+...|...+++++|..+|+.+.. -++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46777888999999999999999988765 21 2222 2334577889999999999999887421 122
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCC
Q 048812 260 --DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337 (645)
Q Consensus 260 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~ 337 (645)
-..+++.|...|.+.|++++|...+++..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al------------------------------------------------- 310 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERAL------------------------------------------------- 310 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHH-------------------------------------------------
Confidence 24568888889999999999998876643
Q ss_pred CcHHHHHHHHhhc---CcCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhccCcH
Q 048812 338 DNIELAYDLFSEI---SEKNV-YLWTSVIAAYAMAGHAQKAIDLFLEMEET---GTKPD----QVTFIALLSACSHGGLV 406 (645)
Q Consensus 338 ~~~~~A~~~f~~~---~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~ll~a~~~~g~~ 406 (645)
+++... ..+.+ .-.+.++..+...+++++|..+++...+. -+.++ ..++..+...|.+.|++
T Consensus 311 -------~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 311 -------EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred -------HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 222221 11222 23566778888999999999998876532 13333 35789999999999999
Q ss_pred HHHHHHHHHhHHhc-----CCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhc
Q 048812 407 DEGYDFLSKKSRVY-----NIKPK-MQHYGCMVDLLGRAGHLEESANFITSM--------PIPPDV-SIWSSLLRACRCH 471 (645)
Q Consensus 407 ~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd~-~~~~~ll~a~~~~ 471 (645)
++|.++|+++.+.. +..+. ...++.|...|.+.+++++|.++|.+. +..|++ .+|..|...|...
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 99999999887532 11222 467788999999999999998888765 344554 5899999999999
Q ss_pred CChHHHHHHHHHHHh
Q 048812 472 QNVKLAEHAFKHLTE 486 (645)
Q Consensus 472 g~~~~a~~~~~~~~~ 486 (645)
|+++.|+++.+.+..
T Consensus 464 g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 464 GNYEAAEELEEKVLN 478 (508)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999999885
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=5.5e-07 Score=89.78 Aligned_cols=231 Identities=13% Similarity=0.028 Sum_probs=151.4
Q ss_pred CChHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 048812 207 RDLEMGKNLHLFLEEST-MKI--SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARR 282 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 282 (645)
+..+.+..-+.+++... +.| ....+..+...|.+.|+.++|...|++.....| +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455556666666432 122 245577778888999999999998887544455 67889999999999999999999
Q ss_pred HHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHH
Q 048812 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVI 362 (645)
Q Consensus 283 ~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li 362 (645)
.|++..+.+ ..+..+|..+.
T Consensus 120 ~~~~Al~l~------------------------------------------------------------P~~~~a~~~lg 139 (296)
T PRK11189 120 AFDSVLELD------------------------------------------------------------PTYNYAYLNRG 139 (296)
T ss_pred HHHHHHHhC------------------------------------------------------------CCCHHHHHHHH
Confidence 888776433 12456677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 442 (645)
..+...|++++|++.|++..+. .|+..........+...++.++|...|.+... ...|+...+ .++.. ..|++
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~--~lg~~ 212 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEF--YLGKI 212 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHH--HccCC
Confidence 8888899999999999998874 45543222222234456789999999976553 223443222 33333 34444
Q ss_pred HH--HHHHHHh-CCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHH
Q 048812 443 EE--SANFITS-MPI----PP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN-DGAHVLLANIYAK 504 (645)
Q Consensus 443 ~~--A~~~~~~-m~~----~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~ 504 (645)
.+ +.+.+.+ ... .| ....|..+...+...|+.++|+..|+++++.+|.+ ...-..++.....
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 33 3322222 111 12 23578889999999999999999999999999744 3343445544433
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=3.3e-06 Score=80.70 Aligned_cols=200 Identities=16% Similarity=0.186 Sum_probs=133.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHH
Q 048812 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAY 344 (645)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~ 344 (645)
-.|+--|.+.++..+|..+.++.....+ +.-++.|.. |..+.+.--..+-+.-|.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP--~EyilKgvv-----------------------~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTP--YEYILKGVV-----------------------FAALGQETGSREHLKIAQ 343 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCCh--HHHHHHHHH-----------------------HHHhhhhcCcHHHHHHHH
Confidence 3456668899999999998877652222 222222111 111111111122455666
Q ss_pred HHHhhcCc-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 345 DLFSEISE-----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 345 ~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
+.|..... .++.--.+|.+.+.-..++++.+-.+...... ...|.+--..+..|.+..|.+.+|.++|-.+. .
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~ 421 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-G 421 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-C
Confidence 66665443 23344667888888888899999888888776 33344444467889999999999999997765 2
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL-RACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
-.++.+..-...|...|.+.|+.+-|.+++-++..+.+..+...|| +-|.+.+.+--|-+.|..+..++|.+
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 2333333334567788999999999999999997656666655554 45999999999999999998899854
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.4e-05 Score=78.07 Aligned_cols=378 Identities=11% Similarity=0.070 Sum_probs=220.1
Q ss_pred hHHHHHHhcCChHHHHHHHhhCCCCCcc-cHHHHHHHHHHcCC-hhHHHHHHHHHhhcC-ch------hh--ccCChHHH
Q 048812 78 QVFEFLVFTGDLGYAQQIIRQGDEPEIK-IWNSIIENQLINGY-PQEVFAIYLYLVTRT-VL------LN--KCGKLKEV 146 (645)
Q Consensus 78 ~ll~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~-~~~A~~~~~~m~~~~-~~------~~--~~g~~~~A 146 (645)
..+..|-..++-+.|.....+.++.-.. --|.|+.-+-+.|. -.++.--+...+... .. .. .....+.+
T Consensus 102 ~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~ 181 (564)
T KOG1174|consen 102 RAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEIN 181 (564)
T ss_pred HHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhh
Confidence 3445566667778888887777644332 23444443333322 122222222222211 00 00 00111111
Q ss_pred HHHHccCCCCCcchHHH-HHHHHHh--cCChHHHHHHHHHHhhC-CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 048812 147 CQLFDKLPNRDVISWNT-MISCYTS--MGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222 (645)
Q Consensus 147 ~~~f~~m~~~~~~~~n~-li~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (645)
-.....+.-++..-|-. .|.++++ .++...|..++-.+... -++-|......+.+.+...|+..++...|+.....
T Consensus 182 S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~ 261 (564)
T KOG1174|consen 182 SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA 261 (564)
T ss_pred hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence 11111222233333433 2444433 45555555554444333 23445566777777888888888888888776644
Q ss_pred CCCCchhHH-HHHHHHHHHcCCHHHHHHHHcccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHH
Q 048812 223 TMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300 (645)
Q Consensus 223 g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~ 300 (645)
+ |+.... .-..-.+.+.|+.++-.++-..+.. .......|-.-........+++.|+.+-++-.+.|......+|
T Consensus 262 d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ali- 338 (564)
T KOG1174|consen 262 N--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALI- 338 (564)
T ss_pred C--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHH-
Confidence 2 222111 1111223455666655554443211 1123344544445555667777787777776654443322222
Q ss_pred hhhccCCchhhhhhccccchhhHHHHHHHHHHc--CCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHH
Q 048812 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN--QISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAI 375 (645)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~--~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 375 (645)
.|. -+..++.++|.-.|+.... -+..+|.-|+..|...|++.+|.
T Consensus 339 ------------------------------lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 339 ------------------------------LKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred ------------------------------hccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 111 1223467777777765432 47789999999999999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 376 DLFLEMEETGTKPDQVTFIALL-SACS-HGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 376 ~l~~~m~~~g~~pd~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
.+-+...+. .+.+..|...+. ..|. ...--++|.+++++.. .+.|+ ....+.+..++.+.|+.+++..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 877665443 344555555442 2333 2334577888887766 36787 566778888999999999999999886
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 453 -PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 453 -~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
...||...-+.|...++..+.+++|...|..++.++|.+.
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 6779999999999999999999999999999999999873
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=2e-07 Score=92.97 Aligned_cols=193 Identities=15% Similarity=0.045 Sum_probs=144.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcH
Q 048812 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI 340 (645)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~ 340 (645)
...|..+...|...|+.++|...|++..+.+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~------------------------------------------------- 94 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR------------------------------------------------- 94 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------------------------------------------------
Confidence 4568888889999999999999888766433
Q ss_pred HHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 341 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
..+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+
T Consensus 95 -----------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~- 160 (296)
T PRK11189 95 -----------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ- 160 (296)
T ss_pred -----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 24567899999999999999999999999987 4565 67788888889999999999999999885
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hcCCC
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT-------ETDPL 490 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~p~ 490 (645)
..|+..........+...+++++|.+.+++. ...|+...| .......|+...+ ..++.+. ++.|.
T Consensus 161 --~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~ 234 (296)
T PRK11189 161 --DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAER 234 (296)
T ss_pred --hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH
Confidence 4565332222233345678899999999664 233433222 2222335665544 3445544 35566
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 491 ~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.+.+|..|+.+|...|++++|...+++..+.+
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77899999999999999999999999987755
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=6.9e-06 Score=80.22 Aligned_cols=284 Identities=12% Similarity=0.067 Sum_probs=160.7
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhh
Q 048812 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL-WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302 (645)
Q Consensus 224 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~ 302 (645)
++.|+....++.+.|...|+.++|...|++..+..|+.++ .....-.+.+.|+.+.-..+...+...+..|-....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf--- 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF--- 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh---
Confidence 4555666666666666666666666666665454553322 111122234455555555444444322111100000
Q ss_pred hccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048812 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFL 379 (645)
Q Consensus 303 ~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 379 (645)
+|. ...+...+.+.|...-+...+ +++..|-.-...+.+.|++++|.-.|+
T Consensus 305 -----------------------V~~---~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 305 -----------------------VHA---QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred -----------------------hhh---hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHH
Confidence 000 001122244555555444433 333334333456667778888888787
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH-HHHHH-cCCHHHHHHHHHhC-CCC
Q 048812 380 EMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV-DLLGR-AGHLEESANFITSM-PIP 455 (645)
Q Consensus 380 ~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m-~~~ 455 (645)
..+. ..| +...|..|+.+|...|.+.+|.-.-+...+.. ..+..+.+-+. +.+.- ..--++|.+++++. .++
T Consensus 359 ~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 359 TAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 7765 343 46778888888888888777776665555322 22233332221 11111 12235677777664 566
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEE
Q 048812 456 PDV-SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534 (645)
Q Consensus 456 pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~ 534 (645)
|+- ..-+.+..-|...|..+.+..++++.+...|+. ..++.|.+++...+.+.+|...+.....
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-------------- 499 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR-------------- 499 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------
Confidence 653 355566666778888888888888888887755 6778888888888888888877766543
Q ss_pred CCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 048812 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567 (645)
Q Consensus 535 ~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 567 (645)
.+|+.+....-+..|.++|++
T Consensus 500 ------------~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 500 ------------QDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred ------------cCccchHHHHHHHHHHhccCC
Confidence 457777777777777666654
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=1.5e-07 Score=88.74 Aligned_cols=231 Identities=9% Similarity=0.010 Sum_probs=182.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhH-HHHHHHHHhcC
Q 048812 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW-TTLVSGYVKSN 275 (645)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~-~~li~~~~~~g 275 (645)
+.+.++|.+.|.+..|+..++..++. .|-+.+|--|-..|.+..+.+.|..+|.+-...-|-.+|+ .-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45778888999999999998888876 4556677778899999999999999998854455644444 45667777788
Q ss_pred CHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCCh
Q 048812 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNV 355 (645)
Q Consensus 276 ~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~ 355 (645)
+.++|.++++...+.+. -|+
T Consensus 305 ~~~~a~~lYk~vlk~~~------------------------------------------------------------~nv 324 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHP------------------------------------------------------------INV 324 (478)
T ss_pred hHHHHHHHHHHHHhcCC------------------------------------------------------------ccc
Confidence 88888888887764432 244
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYGCMV 433 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li 433 (645)
.+..++..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|.-.+++|-+..-|+.... .--.|+ ..+|-.+.
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg 402 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLG 402 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccc
Confidence 44555667788889999999999999999876 778888888899999999999998888773 334454 56788888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
......|++.-|.+.|+-. ...| +...++.|.---.+.|+++.|..++..+....|.-
T Consensus 403 ~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 403 FVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred eeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 8888899999999998875 3333 45688888887889999999999999999988864
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.2e-06 Score=87.07 Aligned_cols=273 Identities=14% Similarity=0.069 Sum_probs=181.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 242 (645)
.-..-+...+++.+.+++++...+. .++....+..=|.++...|+..+-..+-..+++. .|..+.+|-++.--|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 3344455677788888888777665 2444455555555666777666555555555544 3556677777777777778
Q ss_pred CHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchh
Q 048812 243 KIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321 (645)
Q Consensus 243 ~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~ 321 (645)
+.++|++.|.+..+-+| =...|-.....|+-.|..|+|+..+...
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA---------------------------------- 372 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA---------------------------------- 372 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH----------------------------------
Confidence 88888888876322233 2456778888888888877777765432
Q ss_pred hHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 048812 322 HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSAC 400 (645)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~ 400 (645)
-++|.....|... +..-|.+.+..+-|.+.|.+... +-|+ +...+-+.-..
T Consensus 373 ----------------------arl~~G~hlP~LY----lgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 373 ----------------------ARLMPGCHLPSLY----LGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVA 424 (611)
T ss_pred ----------------------HHhccCCcchHHH----HHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhhee
Confidence 3333333333221 33456677888888888877665 4454 45555555455
Q ss_pred hccCcHHHHHHHHHHhHHhc-CCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC
Q 048812 401 SHGGLVDEGYDFLSKKSRVY-NIKP----KMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQN 473 (645)
Q Consensus 401 ~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~ 473 (645)
.+.+.+.+|..+|+.....- .+.+ ...+++.|..+|.+.+++++|...+++. . .+.|..++.++.-.+...|+
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 56778888888887766211 0111 2455788888899999999999999886 2 33477888888888999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 474 VKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
++.|...|.+.+.+.|++..+-..|.
T Consensus 505 ld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 505 LDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999999999998855444444
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=4.4e-06 Score=86.79 Aligned_cols=362 Identities=12% Similarity=0.156 Sum_probs=207.0
Q ss_pred HHHHHHhcCChHHHHHHHh--hCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCC--
Q 048812 79 VFEFLVFTGDLGYAQQIIR--QGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP-- 154 (645)
Q Consensus 79 ll~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~-- 154 (645)
-|..|.+.|.+..|.+.-. +-...|......+..++++...++.|-.+|+++ .++++|.+.|++-.
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki----------~d~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKI----------HDFDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh----------hCHHHHHHHHHcccHH
Confidence 3455555555555544332 112234444444555555555555555555544 34455555554321
Q ss_pred ----------CC-CcchH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 048812 155 ----------NR-DVISW-NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222 (645)
Q Consensus 155 ----------~~-~~~~~-n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (645)
-| .++.. .....-+.+.|+++.|+..|-+... ..-.+.+....+.+.+|..+++.+...
T Consensus 691 ~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 01 11111 1223334455666666666654321 122344555567777777777766544
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchh--HHHHHH
Q 048812 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMIS 300 (645)
Q Consensus 223 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t--~~~ll~ 300 (645)
. .-..-|.-+.+-|+..|+++.|.++|-+ ...++.-|..|.++|+|+.|.++-++...|.... |.+--.
T Consensus 762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e-------~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakae 832 (1636)
T KOG3616|consen 762 K--TASGYYGEIADHYANKGDFEIAEELFTE-------ADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAE 832 (1636)
T ss_pred c--cccccchHHHHHhccchhHHHHHHHHHh-------cchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHH
Confidence 2 2233455667788888888888888876 2345667778888888888888877766553321 111110
Q ss_pred hhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048812 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380 (645)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 380 (645)
-+- +.+++.+|+++|-.+..|+. -|..|-++|..+..+++..+
T Consensus 833 dld--------------------------------ehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 833 DLD--------------------------------EHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred hHH--------------------------------hhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH
Confidence 011 12266777777777777764 46788889999888888766
Q ss_pred HHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---
Q 048812 381 MEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP--- 455 (645)
Q Consensus 381 m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 455 (645)
-. || ..|-..+..-+-..|++..|.+.|-+.. -|.+-+++|-..+.+++|.++-+.-+-.
T Consensus 876 ~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~ 940 (1636)
T KOG3616|consen 876 HH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAE 940 (1636)
T ss_pred hC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHH
Confidence 43 33 4566677777788888888888776544 2566778888888888888887665311
Q ss_pred -CCHHHHHHH------HHHHHhcCChHHHHH-------------HHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 456 -PDVSIWSSL------LRACRCHQNVKLAEH-------------AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 456 -pd~~~~~~l------l~a~~~~g~~~~a~~-------------~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
.-...|.-- ..-+-++|-++.|.. +.+-..+ ..-+..+.-+.--+...|++++|.+-+
T Consensus 941 k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhh
Confidence 012233221 222344454444443 3222222 122356667777788889999987766
Q ss_pred HHHHhCC
Q 048812 516 MKLRDMG 522 (645)
Q Consensus 516 ~~m~~~~ 522 (645)
-+..+.+
T Consensus 1019 veaikln 1025 (1636)
T KOG3616|consen 1019 VEAIKLN 1025 (1636)
T ss_pred HHHhhcc
Confidence 6655543
No 77
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=8.2e-08 Score=97.52 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=173.5
Q ss_pred HHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
-+.+.|++.+|.-.|+...+..| +...|--|....+.+++-..|+..+++..+-|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP----------------------- 350 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP----------------------- 350 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-----------------------
Confidence 35678888888888887555566 677888888888888888888888877765543
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-------- 387 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------- 387 (645)
.|....-+|.-.|...|.-.+|+..++.-+....+
T Consensus 351 -------------------------------------~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~ 393 (579)
T KOG1125|consen 351 -------------------------------------TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAG 393 (579)
T ss_pred -------------------------------------ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccC
Confidence 35555567777888899999999999887654211
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048812 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLL 465 (645)
Q Consensus 388 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll 465 (645)
++..+-.. ..+.+...+....++|-++....+..+|..++.+|.-+|--.|.+++|.+.|+.. ..+| |..+||-|.
T Consensus 394 ~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 394 ENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG 471 (579)
T ss_pred ccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence 01000000 1223333445666777777777777788999999999999999999999999987 6777 667999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..++.....++|+..|.+++++.|.-..+.+.|+-.|...|.++||.+.+-....
T Consensus 472 AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 472 ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876544
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=5.4e-07 Score=81.40 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVD 434 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 434 (645)
+...+.-+|.+.|+...|...+++.++. .|+ ..++..+...|...|..+.|.+.|++..+ +.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 4556778999999999999999999985 455 67888999999999999999999999884 6775 678888999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 435 LLGRAGHLEESANFITSMPIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
.+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|+..+++.++++|+.+.+...+.+...+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998732232 45788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 048812 511 MSRIRMKLRDMG 522 (645)
Q Consensus 511 a~~~~~~m~~~~ 522 (645)
|...++....++
T Consensus 192 Ar~~~~~~~~~~ 203 (250)
T COG3063 192 ARLYLERYQQRG 203 (250)
T ss_pred HHHHHHHHHhcc
Confidence 999999887765
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=3.4e-05 Score=79.81 Aligned_cols=406 Identities=13% Similarity=0.087 Sum_probs=221.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
+....+.+..+.+++ +++..+.+..-.--.+...|+-++|........+ .+.+.|..+.-.+....++++|+..|+
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 456666666666665 3333333333333345566888888888876654 456779988888888888889998888
Q ss_pred HHhhcC-----------chhhccCChHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCh
Q 048812 129 YLVTRT-----------VLLNKCGKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDE 193 (645)
Q Consensus 129 ~m~~~~-----------~~~~~~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 193 (645)
.+...+ -+-...|+++.....-.+.. ......|..+..++.-.|++..|..+.++..+.- -.|+.
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~ 179 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSK 179 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCH
Confidence 877643 11223344443333322222 2355677777777777788888887777776653 23454
Q ss_pred hhHHHHH------HHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHH
Q 048812 194 VTMVSLI------SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267 (645)
Q Consensus 194 ~t~~~ll------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~l 267 (645)
..|.-.. ....+.|.++.|.+.+..-.. .+......-..-.+.+.+.+++++|..++..+....||..-|+-.
T Consensus 180 ~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~ 258 (700)
T KOG1156|consen 180 EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH
Confidence 4443222 223445555555554332221 112222233344566677777777777777766666666655544
Q ss_pred HHHHH-hcCCHHHHH-HHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHH
Q 048812 268 VSGYV-KSNERDEAR-RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345 (645)
Q Consensus 268 i~~~~-~~g~~~~A~-~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~ 345 (645)
...+. +--+.-+++ .+|....+.=. .
T Consensus 259 l~~~lgk~~d~~~~lk~ly~~ls~~y~-r--------------------------------------------------- 286 (700)
T KOG1156|consen 259 LEKALGKIKDMLEALKALYAILSEKYP-R--------------------------------------------------- 286 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhcCc-c---------------------------------------------------
Confidence 43332 222222222 33333221000 0
Q ss_pred HHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH----HHHHHHHHhHHhcC
Q 048812 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD----EGYDFLSKKSRVYN 421 (645)
Q Consensus 346 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~----~a~~~~~~~~~~~~ 421 (645)
...|--...+. +.+ ..-.+..-.++..+.+.|++|--..+.++. -.....+ -+..+...+. ..|
T Consensus 287 ----~e~p~Rlplsv-l~~---eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~-~~~ 354 (700)
T KOG1156|consen 287 ----HECPRRLPLSV-LNG---EELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLS-GTG 354 (700)
T ss_pred ----cccchhccHHH-hCc---chhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcc-ccc
Confidence 00000000000 000 111223334555566666654333332222 2111111 1111111111 011
Q ss_pred ----------CCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 422 ----------IKPK--MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVS-IWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 422 ----------~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
-.|. ..++-.++..+-+.|+++.|+.+++.. .-.|+.+ .|.+=.+.+...|+++.|...++++.++
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 1344 355567888889999999999999876 5556544 5555556688889999999999999998
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 488 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
+-.|...-.--++-..++.+.++|.++.....+.|.
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 865533222355556688889999998888776664
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.78 E-value=8e-05 Score=76.98 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHhhcCc---------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHH
Q 048812 325 WVHVYIKKNQISIDNIELAYDLFSEISE---------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD---QVT 392 (645)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t 392 (645)
.++.+..+..+..++..+-..+|.+... .-...|-.+...|-.+|+.+.|..+|++..+...+-- ..+
T Consensus 348 nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 348 NVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred cHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 3555566665655555555555544322 1235688888899999999999999998876432211 223
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----------C-------ChHHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 048812 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIK----------P-------KMQHYGCMVDLLGRAGHLEESANFITSM--- 452 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 452 (645)
|..-...=.+..+++.|.++.+.... -.-. | +...|+..+|..-..|-++....+++++
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33333333455677888887776652 1111 1 1345677788888888888888888887
Q ss_pred C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHH-H--cCCchHHHHHHHHHHh
Q 048812 453 P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYA-K--AGRLDDMSRIRMKLRD 520 (645)
Q Consensus 453 ~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~y~~l~~~~~-~--~g~~~~a~~~~~~m~~ 520 (645)
. ..|..+. ...--+-.+.-++++.+++++-+.+.|- -...|+..+.-+. + ..+++.|..+|++..+
T Consensus 507 riaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 507 RIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred hcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 2 3343332 2222245677789999999999887743 2234444333332 2 3467889999999887
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=3.3e-07 Score=90.05 Aligned_cols=147 Identities=12% Similarity=0.069 Sum_probs=83.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH---HHHHHHHHHHHcCC
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ---HYGCMVDLLGRAGH 441 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~ 441 (645)
+...|++++|++++.+- .+.......+..+...++++.|.+.++.|.+ +..|.. ...+.+..+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchh
Confidence 33445566665555431 2334444455556666666666666666552 233321 11222222222235
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc-hHHHHHHHHH
Q 048812 442 LEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL-DDMSRIRMKL 518 (645)
Q Consensus 442 ~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~-~~a~~~~~~m 518 (645)
+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|.++.+...++-+..-.|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 66677777666 33456667777777777777777777777777777777777777777777777777 4566677766
Q ss_pred Hh
Q 048812 519 RD 520 (645)
Q Consensus 519 ~~ 520 (645)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=6.6e-05 Score=81.10 Aligned_cols=329 Identities=14% Similarity=0.173 Sum_probs=206.5
Q ss_pred HHHcCChhHHHHHHHHHhhcC----chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048812 114 QLINGYPQEVFAIYLYLVTRT----VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189 (645)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~----~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (645)
.+.++.+++|+.+|++--... .+.-.-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1058 ai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 344555666777766543322 2233445666666666655544 45888888888888888888877543
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHH
Q 048812 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269 (645)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~ 269 (645)
-|+..|.-++..+.+.|.+++-...+..+.+..-+|. +-+.||-+|++.+++.+-+++.. +||+.....+.+
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~-----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA-----GPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-----CCCchhHHHHhH
Confidence 2667788888888888888888887777666654444 44678888888888888777643 466666666677
Q ss_pred HHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhh
Q 048812 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349 (645)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~ 349 (645)
-|...|.++.|.-+|.
T Consensus 1203 rcf~~~~y~aAkl~y~---------------------------------------------------------------- 1218 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYS---------------------------------------------------------------- 1218 (1666)
T ss_pred HHhhhhhhHHHHHHHH----------------------------------------------------------------
Confidence 7777777776665553
Q ss_pred cCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 048812 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429 (645)
Q Consensus 350 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (645)
++.-|..+...+...|+++.|...-++. .+..||.-+-.+|...+.+.-|. |. -.++.....-.
T Consensus 1219 ----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iC-GL~iivhadeL 1282 (1666)
T KOG0985|consen 1219 ----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----IC-GLNIIVHADEL 1282 (1666)
T ss_pred ----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hc-CceEEEehHhH
Confidence 3344777778888888888887654432 25678888888888776654432 22 12233455666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cC-C------CCchhHHHHH
Q 048812 430 GCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTE-TD-P------LNDGAHVLLA 499 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~-p------~~~~~y~~l~ 499 (645)
..|+..|-..|-++|-..+++.. +.+. ....|+-|.--|++.+ +++..+-++-... ++ | +....|.-|.
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888764 4332 3334444444444433 2333322222221 11 1 1224566677
Q ss_pred HHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH
Q 048812 500 NIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l 561 (645)
-.|.+-..|+.|.-.. | + .|.-.| .|.+.++|..+...+
T Consensus 1362 fLY~~y~eyDNAa~tm--m-~-----h~teaw---------------~~~~FKdii~kVaNv 1400 (1666)
T KOG0985|consen 1362 FLYDKYEEYDNAALTM--M-E-----HPTEAW---------------DHGQFKDIITKVANV 1400 (1666)
T ss_pred HHHHhhhhhhHHHHHH--H-h-----CChhhh---------------hhhhHHHHHHHHhhH
Confidence 7777777777765442 2 1 233344 677777777666554
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=7.8e-05 Score=76.92 Aligned_cols=303 Identities=12% Similarity=-0.007 Sum_probs=176.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhhHH-HHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHH---H
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMV-SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN---Y 233 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~ 233 (645)
..|..+...+...|+++++...+.+...... .++..... .....+...|+++.+.+++..+.+.. +.+...++ .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 4566666667777777777666666544311 22222111 12223456788888888888887764 44444444 2
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhh
Q 048812 234 LVDMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312 (645)
Q Consensus 234 li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~ 312 (645)
+.......|..+.+.+.++......|+ ......+...+...|++++|.+.+++..+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------------------- 144 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------------------- 144 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------
Confidence 222222345566666666542112232 3344455667788888888888888765433
Q ss_pred hhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH-
Q 048812 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPDQ- 390 (645)
Q Consensus 313 a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~- 390 (645)
+.+...+..+...|...|++++|+.++++...... .|+.
T Consensus 145 ---------------------------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~ 185 (355)
T cd05804 145 ---------------------------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLR 185 (355)
T ss_pred ---------------------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchh
Confidence 23445567777788888888888888888776422 2332
Q ss_pred -HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHHcCCHHHHHHH---HHh---C-CCCCCHH
Q 048812 391 -VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY-G--CMVDLLGRAGHLEESANF---ITS---M-PIPPDVS 459 (645)
Q Consensus 391 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~pd~~ 459 (645)
..+..+...+...|+.++|..++++........+..... + .++.-+...|..+.+.++ ... . +......
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~ 265 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAF 265 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchH
Confidence 234456677788888888888888875321111111111 1 223333444432222222 111 1 1111122
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-C--------CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETD-P--------LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.......++...|+.+.|..+++.+.... . ...........++...|++++|.+.+.......
T Consensus 266 ~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 266 NDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 23356666788899999999999887622 1 123344566777889999999999988876543
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.67 E-value=2e-05 Score=83.35 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 238 (645)
+...|++++|++.+..-... -+|.. .+......+.+.|+.++|..++..+++.+ +.+..-|..|..+.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 44556666666665443222 23333 33334445555566666666666665554 33333344444443
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.65 E-value=9.7e-05 Score=80.02 Aligned_cols=443 Identities=12% Similarity=0.094 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHhCCCCC-hhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHHHHHh
Q 048812 56 EFERIHSHLITTNLMRD-PQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIYLYLV 131 (645)
Q Consensus 56 ~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (645)
.+..++..+....+.++ ...|..|-..|...-+...|.+.|++..+ .|..+|-.....|++...+++|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34455555555555444 35688888999888899999999998764 467789999999999999999999844333
Q ss_pred hc-------------CchhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhh
Q 048812 132 TR-------------TVLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195 (645)
Q Consensus 132 ~~-------------~~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 195 (645)
+. +-.|.+.++..+|..-|..... .|...|..+..+|.+.|.+..|+++|.+.... .|+. +
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-K 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-H
Confidence 31 1667788888888888886543 57889999999999999999999999988764 4543 3
Q ss_pred HHHHHH--HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc-------CCHHHHHHHHccc-------CCC--
Q 048812 196 MVSLIS--ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC-------GKIGEAQKLLGRY-------EID-- 257 (645)
Q Consensus 196 ~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-------g~~~~A~~~~~~m-------~~~-- 257 (645)
|...-. .-+..|.+.++...++.++..- .......+.|...+.++ |-...|...|+.- ...
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 332222 2456788999998888876542 12222233333333332 3333333333330 000
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchh--HHHHHHh-hhccC----Cchhh--hhhc---------cccc
Q 048812 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMISG-MLNQD----AEFKY--KSCA---------SIGA 319 (645)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t--~~~ll~~-~~~~~----~~~~~--~a~~---------~~~~ 319 (645)
..+...|-.+- .|..+|-... |+.+. +..++.. +-..+ +++-+ .-|. ...=
T Consensus 710 ~~~~~~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 710 QSDRLQWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred hhhHHHHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 01222333222 2333333333 33111 1111111 00011 11111 1111 1111
Q ss_pred hhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048812 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 396 (645)
...|.....+....+-...+...|...+.... ..|..+||.|.-. ...|.+.-|...|-+-... .+.+..+|..+
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~Nl 856 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNL 856 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheecc
Confidence 23455555555555555556667777776443 3678899987766 6667777777777665554 34467889888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHH
Q 048812 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-------PIPPDVSIWSSLLRAC 468 (645)
Q Consensus 397 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd~~~~~~ll~a~ 468 (645)
--.|....+++.|...|..... +.|+ ...|-.........|+.-++..+|..- +--|+...|-....-.
T Consensus 857 gvL~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h 933 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIH 933 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHH
Confidence 8889999999999999988773 6674 666766666667788888888888752 2345655565544445
Q ss_pred HhcCChHHH----------HHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 469 RCHQNVKLA----------EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 469 ~~~g~~~~a----------~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
...|+.++- --..++.+...|+...+|...+...-..+.+.+|.+...+.
T Consensus 934 ~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555555443 33444555567888888888888888888877777665553
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.64 E-value=1e-05 Score=73.38 Aligned_cols=194 Identities=13% Similarity=0.076 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 239 (645)
..-|.-+|.+.|++..|..-+++.++. .|+. .++..+...|-+.|+.+.|.+-|..+++.. +.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 445666788888888888888888776 3443 477777777788888888888888887765 556677777777788
Q ss_pred HcCCHHHHHHHHcccCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 240 KCGKIGEAQKLLGRYEIDEV----DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
..|++++|...|++. +..| -..+|..+.-+..+.|+++.|...|++..+.|.
T Consensus 115 ~qg~~~eA~q~F~~A-l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp----------------------- 170 (250)
T COG3063 115 AQGRPEEAMQQFERA-LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP----------------------- 170 (250)
T ss_pred hCCChHHHHHHHHHH-HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-----------------------
Confidence 888888888888763 2233 345777777777788888888887777654332
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 395 (645)
.+..+.-.|.......|++-.|...++.....+. ++..+...
T Consensus 171 -------------------------------------~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L 212 (250)
T COG3063 171 -------------------------------------QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLL 212 (250)
T ss_pred -------------------------------------CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHH
Confidence 1223344556666677788888887777776655 77777777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHh
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
.|..-...|+.+.+.++=..+.+.
T Consensus 213 ~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 213 GIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777777777777776666653
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.63 E-value=1.1e-05 Score=83.79 Aligned_cols=231 Identities=16% Similarity=0.226 Sum_probs=143.7
Q ss_pred HHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchh--HHHHHHhhhccCCchhhhhh
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMISGMLNQDAEFKYKSC 314 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t--~~~ll~~~~~~~~~~~~~a~ 314 (645)
-+...|+++.|..-|-+ . ...---|.+-.....|.+|+.+++.++..+..+ |..+-..|..
T Consensus 715 hl~~~~q~daainhfie--a-----~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan---------- 777 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIE--A-----NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN---------- 777 (1636)
T ss_pred HHHHHHhHHHHHHHHHH--h-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc----------
Confidence 33445555555555543 1 111123444556677778888877776544322 2222223332
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048812 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394 (645)
Q Consensus 315 ~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 394 (645)
.++++.|+++|.+.. .++--|..|.+.|+++.|.++-.+. .|.......|.
T Consensus 778 ----------------------~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yi 828 (1636)
T KOG3616|consen 778 ----------------------KGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYI 828 (1636)
T ss_pred ----------------------chhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHH
Confidence 236777777776432 3556788899999999998876543 34444556666
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~ 474 (645)
+-..-.-..|++.+|.+++-.+. .|+. -|.+|-+.|..++..++..+-.-..-..|-..+..-+-..|++
T Consensus 829 akaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 829 AKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred HhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 66666777888888887764333 3553 4678889999999888888764222234556666778888888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
..|+.-|-++ .-+-.-+++|-.++.|++|.++-+.--..+..|...+-|
T Consensus 899 kaae~~flea--------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 899 KAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 8888877544 345667788999999999988865433333333333444
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.8e-05 Score=74.06 Aligned_cols=290 Identities=13% Similarity=0.090 Sum_probs=183.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHH-HHHHH
Q 048812 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT-LVSGY 271 (645)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~-li~~~ 271 (645)
.--+.+++..+.+..+++.+.+++..-.+.. +.+....+.|..+|....++..|-..++++-...|...-|.. -...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3345555655666667777777766655553 335556666777777777777777777774333443333322 23445
Q ss_pred HhcCCHHHHHHHHHhcccC-CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhc
Q 048812 272 VKSNERDEARRLFDEMVER-NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEI 350 (645)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~ 350 (645)
.+.+.+.+|+++...|... +... ..+ ++... ...+.+++-.++.+.++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~--~~l-------------------------qLqaA---IkYse~Dl~g~rsLveQl 138 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHS--RVL-------------------------QLQAA---IKYSEGDLPGSRSLVEQL 138 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHH--HHH-------------------------HHHHH---HhcccccCcchHHHHHhc
Confidence 6677777888887777642 2111 000 00000 112334555666666666
Q ss_pred C-cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-----
Q 048812 351 S-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK----- 423 (645)
Q Consensus 351 ~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----- 423 (645)
+ +.+..+.+.......+.|++++|++-|+...+. |..| ...|+..+ +..+.|+.+.|.++..++++ .|++
T Consensus 139 p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIie-RG~r~HPEl 215 (459)
T KOG4340|consen 139 PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIE-RGIRQHPEL 215 (459)
T ss_pred cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHH-hhhhcCCcc
Confidence 5 345555555556666788888888888777654 3443 45565544 34456777788877777763 3432
Q ss_pred --------CC--------hHHHHHHHHH-------HHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHH
Q 048812 424 --------PK--------MQHYGCMVDL-------LGRAGHLEESANFITSMP----IPPDVSIWSSLLRACRCHQNVKL 476 (645)
Q Consensus 424 --------p~--------~~~~~~li~~-------~~~~g~~~~A~~~~~~m~----~~pd~~~~~~ll~a~~~~g~~~~ 476 (645)
|| .-+-+.++.+ +.+.|+++.|.+-+..|| ...|++|...+.-. -..+++..
T Consensus 216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~ 294 (459)
T KOG4340|consen 216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTE 294 (459)
T ss_pred CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccc
Confidence 11 2234455544 568899999999999995 34577777654322 23466777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 477 a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
+.+-+.-+++++|-++.++..++-+|++..-++-|..++-+
T Consensus 295 g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 295 GFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88888889999999999999999999999999988887744
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=0.00024 Score=83.22 Aligned_cols=409 Identities=15% Similarity=0.067 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHhCCC--C-C----hhhhhhHHHHHHhc----CChHHHHHHHhhCCC--CCcccHHHHHHHHHHcCChh
Q 048812 55 DEFERIHSHLITTNLM--R-D----PQISTQVFEFLVFT----GDLGYAQQIIRQGDE--PEIKIWNSIIENQLINGYPQ 121 (645)
Q Consensus 55 ~~~~~~~~~~~~~g~~--~-~----~~~~~~ll~~~~~~----g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~ 121 (645)
..+.++.+.+.+.|+. + + .+-++.|+.-+.+. .+.+....+..+.-. -+.--+...+..+...++..
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~ 371 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQ 371 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH
Confidence 3456677778777752 1 1 24567777766543 233333333322100 00001222233333344443
Q ss_pred HHHHHHHHHhhcCchhhccCChHHHHHHHccCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHhhC--CC----CC
Q 048812 122 EVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN----RDVISWNTMISCYTSMGMYREGLGLLSKMGAE--GV----SP 191 (645)
Q Consensus 122 ~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~----~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~--g~----~p 191 (645)
.+..++...- ..+...|+++.+...++.++. .+..........+...|++++|..++...... .. .|
T Consensus 372 ~~~~ll~~~a---~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~ 448 (903)
T PRK04841 372 LLRDILLQHG---WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDG 448 (903)
T ss_pred HHHHHHHHhH---HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccch
Confidence 3332222110 223345777777777777652 22222233444556678888888888776442 10 11
Q ss_pred Chh--hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHHcCCHHHHHHHHcccCCC-----CC-
Q 048812 192 DEV--TMVSLISARTKLRDLEMGKNLHLFLEESTMKISG----SLLNYLVDMYFKCGKIGEAQKLLGRYEID-----EV- 259 (645)
Q Consensus 192 ~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~- 259 (645)
... ....+-..+...|+++.+...+......-...+. ...+.+...+...|++++|...+++.... .+
T Consensus 449 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~ 528 (903)
T PRK04841 449 TLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH 528 (903)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH
Confidence 111 1112223345678888888888777653111121 23455566677788888888777663110 11
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC
Q 048812 260 -DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID 338 (645)
Q Consensus 260 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~ 338 (645)
...++..+...+...|++++|...+++...
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~------------------------------------------------- 559 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQ------------------------------------------------- 559 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------------
Confidence 123445556667778888888887765431
Q ss_pred cHHHHHHHHhhcCcC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhccCcHHHHH
Q 048812 339 NIELAYDLFSEISEK----NVYLWTSVIAAYAMAGHAQKAIDLFLEMEET--GTKPD--QVTFIALLSACSHGGLVDEGY 410 (645)
Q Consensus 339 ~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~ll~a~~~~g~~~~a~ 410 (645)
+......+ ....+..+...+...|++++|...+.+.... ...|. ..++..+.......|+.++|.
T Consensus 560 -------~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 632 (903)
T PRK04841 560 -------LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNAR 632 (903)
T ss_pred -------HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 11110000 1223444555667779999998888887542 11122 233444555677789999998
Q ss_pred HHHHHhHHhcCCCCChHHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChHHHHH
Q 048812 411 DFLSKKSRVYNIKPKMQHY-----GCMVDLLGRAGHLEESANFITSMPIP--PDV----SIWSSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--pd~----~~~~~ll~a~~~~g~~~~a~~ 479 (645)
+.++.......-......+ ...+..+...|+.+.|.+++...... ... ..+..+..++...|+.++|..
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 712 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEI 712 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888775321111111111 11224455688999999888765211 111 124556667888899999999
Q ss_pred HHHHHHhcC------CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 480 AFKHLTETD------PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 480 ~~~~~~~~~------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++++++.. +....++..+..+|.+.|+.++|...+.+..+..
T Consensus 713 ~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 713 ILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999888742 1122456678888899999999999888887644
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.56 E-value=0.00027 Score=73.46 Aligned_cols=348 Identities=13% Similarity=0.094 Sum_probs=210.3
Q ss_pred hhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 048812 137 LNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213 (645)
Q Consensus 137 ~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (645)
+...|+.++|......-.. ++.+.|+.+.-.+-...++++|++.|+.....+ +-|...+.-+----++.++++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3456777777776665443 577899999888888999999999999988763 224445554444455677887777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CCChhhHHHH------HHHHHhcCCHHHHHHHH
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID---EVDVVLWTTL------VSGYVKSNERDEARRLF 284 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~~~l------i~~~~~~g~~~~A~~~~ 284 (645)
..-....+.. +.....|..+.-++.-.|+...|..+.+..... .|+...+.-. .......|..++|++-+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6666666543 445667888888888899999999888765332 2444443332 23456678888888877
Q ss_pred HhcccC--CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhHHHH
Q 048812 285 DEMVER--NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYLWTS 360 (645)
Q Consensus 285 ~~m~~~--~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~ 360 (645)
..-... |-..+-- . -....+..+++++|..++..... ||-.-|+-
T Consensus 209 ~~~e~~i~Dkla~~e---------------------------~----ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~ 257 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEE---------------------------T----KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYE 257 (700)
T ss_pred HhhhhHHHHHHHHhh---------------------------h----HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHH
Confidence 654311 1110000 0 00001112267888888877665 44444444
Q ss_pred H-HHHHHHcCCHHHHH-HHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 048812 361 V-IAAYAMAGHAQKAI-DLFLEMEETGTKPDQV-TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437 (645)
Q Consensus 361 l-i~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 437 (645)
. ..++.+--+.-+++ .+|....+. .|-.. .-..=++........+...+++..+. ..|+.+- +..+...|-
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p~v---f~dl~SLyk 331 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVPSV---FKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCCch---hhhhHHHHh
Confidence 3 34443333334444 566655543 11111 00011111222333344445555555 3565443 223333332
Q ss_pred HcCCHHH----HHHHHHhC-C------------CCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 438 RAGHLEE----SANFITSM-P------------IPPDVSIWSSL--LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 438 ~~g~~~~----A~~~~~~m-~------------~~pd~~~~~~l--l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
.-...+= +.++...+ + -+|....|... +..+-+.|+++.|+...+.+++.-|.-...|.+-
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~K 411 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVK 411 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHH
Confidence 2211111 11222222 1 25777777764 4457889999999999999999999988999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
+.++.-.|.+++|...+++.++.+.
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999999999988764
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.00036 Score=67.16 Aligned_cols=183 Identities=15% Similarity=0.138 Sum_probs=116.5
Q ss_pred CCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcH
Q 048812 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH-------AQKAIDLFLEMEETGTKPDQV-TFIALLSACSHGGLV 406 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~ 406 (645)
+..+++.+|..+.....+.+..-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|.+ --.++.+++.-..++
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 344588899888887766554444332333344443 445666665444444433321 122344455556678
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-HHhcCChHHHHHHHHH
Q 048812 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI--PPDVSIWSSLLRA-CRCHQNVKLAEHAFKH 483 (645)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~pd~~~~~~ll~a-~~~~g~~~~a~~~~~~ 483 (645)
++..-++.++. .+-..-|...|| +..+++..|.+.+|+++|-.+.. -.|..+|.+++.- |.+.+.++.|-.++
T Consensus 376 ddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~-- 451 (557)
T KOG3785|consen 376 DDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM-- 451 (557)
T ss_pred HHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH--
Confidence 88888888887 455555665554 77899999999999999988732 1366777766655 56677887776554
Q ss_pred HHhcC-CCCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 484 LTETD-PLNDG-AHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 484 ~~~~~-p~~~~-~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+..+ |.+.. ....+.+-|.+++.+--|.+.|+.+...+
T Consensus 452 -lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 452 -LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred -HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 4433 33322 33356778889999988999999887655
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.0003 Score=76.26 Aligned_cols=157 Identities=15% Similarity=0.275 Sum_probs=119.4
Q ss_pred cHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 339 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
+++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. -|...|..++.++++.|.+++-.+++...+
T Consensus 1090 ~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR- 1160 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR- 1160 (1666)
T ss_pred hHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-
Confidence 3444444433333 3357999999999999999999887432 367889999999999999999999987666
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 419 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
+..-.|.+. +.||-+|++.+++.+-++++.- |+..-...+..-|...|.++.|.-++..+ ..|..|
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~L 1226 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKL 1226 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHH
Confidence 445555544 5899999999999998888753 78888888899999999999999888644 456667
Q ss_pred HHHHHHcCCchHHHHHHHHH
Q 048812 499 ANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m 518 (645)
...+...|.+..|...-++.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 77777777777666554433
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.50 E-value=0.00088 Score=71.09 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
.=+++|.++++-+.+..|++..+|..--.+|.+.|++--|.+.+.
T Consensus 471 dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred cHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 357889999999999999999999999999999999988877664
No 94
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2.3e-07 Score=58.32 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=20.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 421 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.47 E-value=8.8e-06 Score=80.08 Aligned_cols=222 Identities=20% Similarity=0.188 Sum_probs=129.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK-ISGSLLNYLVDMY 238 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y 238 (645)
...-+.++|...|+++.++ .+..... .|.......+...+....+-+.+..-+...+..... .+..+.-....+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4455677888888877654 3333332 666666666665555544444444444333323322 3334444445677
Q ss_pred HHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCc-hhHHHHHHhhhccCCchhhhhhccc
Q 048812 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKSCASI 317 (645)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~t~~~ll~~~~~~~~~~~~~a~~~~ 317 (645)
...|++++|.+++.. . .+.......+..|.+.++++.|.+.++.|.+.+. .+.+.+..+|+.
T Consensus 113 ~~~~~~~~AL~~l~~--~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~------------- 175 (290)
T PF04733_consen 113 FHEGDYEEALKLLHK--G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN------------- 175 (290)
T ss_dssp CCCCHHHHHHCCCTT--T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH-------------
T ss_pred HHcCCHHHHHHHHHc--c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-------------
Confidence 788999999999887 3 5677777888999999999999999999985442 233333322221
Q ss_pred cchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048812 318 GALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394 (645)
Q Consensus 318 ~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 394 (645)
+...+ +.+.+|..+|+++.+ +++.+.|.+..++...|++++|.+++.+..... +-|..|+.
T Consensus 176 ------------l~~g~---e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~La 239 (290)
T PF04733_consen 176 ------------LATGG---EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLA 239 (290)
T ss_dssp ------------HHHTT---TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHH
T ss_pred ------------HHhCc---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHH
Confidence 01111 355666666666654 345556666666667777777777766655432 22355666
Q ss_pred HHHHHHhccCcH-HHHHHHHHHhHH
Q 048812 395 ALLSACSHGGLV-DEGYDFLSKKSR 418 (645)
Q Consensus 395 ~ll~a~~~~g~~-~~a~~~~~~~~~ 418 (645)
.++.+....|+. +.+.+++.++..
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666665 555666666664
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.47 E-value=0.00054 Score=65.76 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=88.6
Q ss_pred hHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCC
Q 048812 78 QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII---ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154 (645)
Q Consensus 78 ~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~ 154 (645)
-|-+.+...|.+.+|+.-|....+-|+..|-++- ..|...|+...|+.-+.++++..
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-------------------- 102 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK-------------------- 102 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--------------------
Confidence 3445566778888999888888777766666553 46666677666665555554321
Q ss_pred CCCcchHHHH---HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 048812 155 NRDVISWNTM---ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231 (645)
Q Consensus 155 ~~~~~~~n~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 231 (645)
||- +.+- ...+.++|.+++|..=|+..+.. .|+..+- ..+..+.--.++-. ..
T Consensus 103 -pDF--~~ARiQRg~vllK~Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~~~~e~~----------------~l 158 (504)
T KOG0624|consen 103 -PDF--MAARIQRGVVLLKQGELEQAEADFDQVLQH--EPSNGLV---LEAQSKLALIQEHW----------------VL 158 (504)
T ss_pred -ccH--HHHHHHhchhhhhcccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHHhHHHHH----------------HH
Confidence 221 1111 12356677777777777777765 3332211 11111111111111 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
-..+..+...|+...|......+....| |...+..-..+|...|.+..|+.-++.
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ 214 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQ 214 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1122334445666666666665333333 556666666777777777777655443
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=1.9e-07 Score=58.61 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=28.4
Q ss_pred hCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC
Q 048812 67 TNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD 100 (645)
Q Consensus 67 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 100 (645)
.|+.||..+||.||+.|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888874
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1.8e-05 Score=76.30 Aligned_cols=167 Identities=16% Similarity=0.023 Sum_probs=123.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-H
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ----VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-Q 427 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~ 427 (645)
.....+..+...+...|++++|+..|++.... .|+. .++..+..++...|++++|...++.+.+.+.-.|.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 34566777888888999999999999988764 3432 466777788888999999999999988644333332 2
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCCCH-HHHH-----------------HHHHHHHhcCChHHHHHH
Q 048812 428 HYGCMVDLLGRA--------GHLEESANFITSM-PIPPDV-SIWS-----------------SLLRACRCHQNVKLAEHA 480 (645)
Q Consensus 428 ~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~pd~-~~~~-----------------~ll~a~~~~g~~~~a~~~ 480 (645)
.+..+...+... |+.++|.+.++++ ...|+. ..+. .+...+...|+++.|...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 344455555544 7788899888876 233432 2221 344557788999999999
Q ss_pred HHHHHhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 481 FKHLTETDPLN---DGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 481 ~~~~~~~~p~~---~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
++++++..|++ +..+..++.+|...|++++|..+++.+..+
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999987654 468899999999999999999999888654
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00045 Score=70.41 Aligned_cols=373 Identities=14% Similarity=0.076 Sum_probs=208.9
Q ss_pred chhhccCChHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChH
Q 048812 135 VLLNKCGKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLE 210 (645)
Q Consensus 135 ~~~~~~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~ 210 (645)
+.....|++++|...|.+.. .+|.+.|..=..+|+..|++++|++=-.+-++. .|+- -.|+-.-.++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 34456799999999998643 468888999999999999999998776666654 6664 37888888888899999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHH-HHHHHcccCCCCCChhhHHHH-----HHHHHhcCCHHHHHHHH
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE-AQKLLGRYEIDEVDVVLWTTL-----VSGYVKSNERDEARRLF 284 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~m~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~ 284 (645)
+|..-|..-++.. +.+...++.|.+++ ..+. +.+.|.. ...|..+ ...+...-.+..-++.+
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~~-------p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFTK-------PYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhccC-------cHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 9999998877765 66777888888887 1221 1222221 1222211 12222222222222222
Q ss_pred HhcccC-C-chhHHHHHHhhhcc-C-Cchhh-------hhh------------ccccchhh---HHHHH---HHHHHcCC
Q 048812 285 DEMVER-N-LISWTLMISGMLNQ-D-AEFKY-------KSC------------ASIGALYH---GIWVH---VYIKKNQI 335 (645)
Q Consensus 285 ~~m~~~-~-~~t~~~ll~~~~~~-~-~~~~~-------~a~------------~~~~~l~~---g~~i~---~~~~~~~~ 335 (645)
..-+.. + ......++.+.... + +...+ .++ ...++... .+..+ ..+.....
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 111100 0 00001111111000 0 00000 000 00001000 00000 11111112
Q ss_pred CCCcHHHHHHHHhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHHhccCcHH
Q 048812 336 SIDNIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK--PD----QVTFIALLSACSHGGLVD 407 (645)
Q Consensus 336 ~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd----~~t~~~ll~a~~~~g~~~ 407 (645)
...+.+.|.+-++...+ .++.-++....+|...|.+.+....-....+.|-. -| ...+..+-.++.+.++++
T Consensus 236 kkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred HhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 22245555555543332 33444566667788888777766666555554422 01 112233344566677888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHH-------------------------HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHH
Q 048812 408 EGYDFLSKKSRVYNIKPKMQHYG-------------------------CMVDLLGRAGHLEESANFITSM-PIPP-DVSI 460 (645)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~ 460 (645)
.|+++|.+....+. .|+...-. .=...+.+.|++.+|.+.+.++ ...| |...
T Consensus 316 ~ai~~~~kaLte~R-t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 316 GAIKYYQKALTEHR-TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 88888887664332 33321100 0123456677888888877776 3334 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|..-..+|.+.|++..|+.-.+..++++|+....|.--+.++....+|++|.+.+++-.+.+
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777778888888888888888888888877777777777777778888888877765543
No 100
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.40 E-value=0.0024 Score=67.90 Aligned_cols=398 Identities=11% Similarity=0.079 Sum_probs=219.9
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC--C--CCccc-HHHHHHHHHH-cC
Q 048812 45 IMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD--E--PEIKI-WNSIIENQLI-NG 118 (645)
Q Consensus 45 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~--~~~~~-~~~li~~~~~-~g 118 (645)
...+..||.+..+-+.++.....-+ .....|+.+-..|+.+|.-..|..+.+.-. + |+..+ +-..-..|.+ -+
T Consensus 330 t~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 330 TFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 4445667999988888888875543 456789999999999999999999998643 3 33232 2222233332 35
Q ss_pred ChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHh-----------cCChHHHHHHHHHHhhC
Q 048812 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS-----------MGMYREGLGLLSKMGAE 187 (645)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~-----------~g~~~~A~~~~~~m~~~ 187 (645)
..++++.+-.+....- -.+++.+ ....|-.+.-+|.. .....++++.+++..+.
T Consensus 409 ~~eegldYA~kai~~~--~~~~~~l-------------~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLL--GGQRSHL-------------KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hhhhHHHHHHHHHHHh--hhhhhhh-------------hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 5666666555554310 0011111 11122222222211 11123444444444433
Q ss_pred C-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-------
Q 048812 188 G-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV------- 259 (645)
Q Consensus 188 g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~------- 259 (645)
+ -.|+..-|.++ -++..++++.|.+...+..+.+-..+...|.-|.-.+.-.+++.+|..+.+......+
T Consensus 474 d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 474 DPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred CCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 2 12222222222 2334445555555555555554344455555554445555555555554443111000
Q ss_pred --------------ChhhHHHHHHHHH------hcCCHHHHHHHHHhcc----c-CC-chhHHHHHHhhhccCCchhhhh
Q 048812 260 --------------DVVLWTTLVSGYV------KSNERDEARRLFDEMV----E-RN-LISWTLMISGMLNQDAEFKYKS 313 (645)
Q Consensus 260 --------------~~~~~~~li~~~~------~~g~~~~A~~~~~~m~----~-~~-~~t~~~ll~~~~~~~~~~~~~a 313 (645)
-..|...++..+- +.+.-...+++...+. + .| +.++..+.+ .++.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a~-------- 622 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVAS-------- 622 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHHh--------
Confidence 1122222332221 2333444555555554 1 11 122222221 1000
Q ss_pred hccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048812 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKN------VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387 (645)
Q Consensus 314 ~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 387 (645)
..... ..+.....+...+.|+ ...|......+...+..++|...+.+.... ..
T Consensus 623 ---------------~~~~~-----~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~ 681 (799)
T KOG4162|consen 623 ---------------QLKSA-----GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DP 681 (799)
T ss_pred ---------------hhhhc-----ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-ch
Confidence 00000 0111122222222333 234666677788889999998877776653 22
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHHHHH
Q 048812 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESAN--FITSM-PIPP-DVSIWS 462 (645)
Q Consensus 388 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-d~~~~~ 462 (645)
-....|......+...|..++|.+.|.... -+.|+ +....++..++.+.|+..-|.+ ++..+ .+.| +...|-
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 234455555556677889999999998766 37886 7788999999999998777776 77776 5666 677999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
.|...+.+.|+.+.|...|....++++.+|.
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999877653
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.40 E-value=0.00037 Score=71.85 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=80.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHH
Q 048812 171 MGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249 (645)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 249 (645)
.+....+.+.+.. ..+..|+. .....+...+...|+++.|.+.+...++.. +.+...+..+...|...|++++|..
T Consensus 93 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 93 SGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred ccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555544 11223333 233445567778899999999999998876 5567778888899999999999999
Q ss_pred HHcccCCCCC---Ch--hhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 250 LLGRYEIDEV---DV--VLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 250 ~~~~m~~~~~---~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.+++.....| +. ..|..+...+...|++++|..+|++..
T Consensus 170 ~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 170 FMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9887433222 22 245577888899999999999998875
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=2.2e-05 Score=87.51 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
...|.++++.-...|.-+...++|++..+. .--...|..|...|.+.+..++|.++++.|.+.++ -....|...++
T Consensus 1497 LNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1497 LNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYAD 1572 (1710)
T ss_pred HHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHH
Confidence 356888888888888888889999998874 22246688889999999999999999999998777 67788999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 435 LLGRAGHLEESANFITSM-PIPP---DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p---d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
.+.+...-++|..++.+. ..-| ......-.+.--.++|+.++|..+|+..+.-.|.....|..++++-.+.|..+.
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH
Confidence 999999999999998875 3333 344555556666789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 048812 511 MSRIRMKLRDMGLK 524 (645)
Q Consensus 511 a~~~~~~m~~~~~~ 524 (645)
++.+|++....++.
T Consensus 1653 vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999887753
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=1.7e-05 Score=83.21 Aligned_cols=220 Identities=14% Similarity=0.144 Sum_probs=135.1
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhh
Q 048812 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303 (645)
Q Consensus 224 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~ 303 (645)
++|-...--.+...+.++|-...|..+|++ ...|...|.+|...|+..+|..+..+-.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er-------lemw~~vi~CY~~lg~~~kaeei~~q~lek------------- 453 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER-------LEMWDPVILCYLLLGQHGKAEEINRQELEK------------- 453 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh-------HHHHHHHHHHHHHhcccchHHHHHHHHhcC-------------
Confidence 455555666678889999999999999998 567888999999999988888887665532
Q ss_pred ccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048812 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 304 ~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 383 (645)
+||...|..+.......--+++|.++++..-.
T Consensus 454 ------------------------------------------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sa 485 (777)
T KOG1128|consen 454 ------------------------------------------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISA 485 (777)
T ss_pred ------------------------------------------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhH
Confidence 23334444444444444445555555544322
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHH
Q 048812 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSI 460 (645)
Q Consensus 384 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~ 460 (645)
. .-..+.....+.++++++.+.|+.-.+ +.| ...+|-.+..+..+.++++.|.+.|..- ...|| ...
T Consensus 486 r-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 486 R-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred H-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence 1 000111111224566666666655442 333 3455555555566666666666666554 44554 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
||.+-.+|.+.|+-.+|...++++++-+-.+...+...+-...+.|.|++|.+.+.++.+.
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7777777777777777777777777765555555555555566777777777777766554
No 104
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0037 Score=64.61 Aligned_cols=422 Identities=13% Similarity=0.072 Sum_probs=215.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHH--HHHH--HHcCChhHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSI--IENQ--LINGYPQEVFAIY 127 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l--i~~~--~~~g~~~~A~~~~ 127 (645)
+.+++|.+.-..++..+ +-++.....=+-+..+.+.+++|..+.+.-.... +++.. =.+| .+.+..++|+..+
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHHHH
Confidence 56777777777777665 4455556666666777778888876655433111 11111 2333 3667777777777
Q ss_pred HHHhhcC--------chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 048812 128 LYLVTRT--------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199 (645)
Q Consensus 128 ~~m~~~~--------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (645)
......+ ..+.+.|++++|..++..+.+.+...+...+.+-+-.-- .++.. ..|......| ..||..+
T Consensus 103 ~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~-~~~q~v~~v~-e~syel~ 178 (652)
T KOG2376|consen 103 KGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQV-QLLQSVPEVP-EDSYELL 178 (652)
T ss_pred hcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhH-HHHHhccCCC-cchHHHH
Confidence 7333322 444577788888888877765444444443332211100 01111 1233332333 2344443
Q ss_pred HH---HHhcCCChHHHHHHHHHHHHhCC----CCc---h------h-HHHHHHHHHHHcCCHHHHHHHHcccCCCCC-Ch
Q 048812 200 IS---ARTKLRDLEMGKNLHLFLEESTM----KIS---G------S-LLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DV 261 (645)
Q Consensus 200 l~---~~~~~~~~~~a~~~~~~~~~~g~----~~~---~------~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~ 261 (645)
.+ .+...|++..|++++....+.+. ..| . . +---|.-.+-..|+.++|..++.......+ |.
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 33 34466778888887777733221 000 0 0 111234455667888888887776433322 32
Q ss_pred ----hhHHHHHHHHHhcCCHH-HHHHHHHhcc---------------cCCchhHHHHHHhhhccCCchhhhhhccccchh
Q 048812 262 ----VLWTTLVSGYVKSNERD-EARRLFDEMV---------------ERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321 (645)
Q Consensus 262 ----~~~~~li~~~~~~g~~~-~A~~~~~~m~---------------~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~ 321 (645)
+.-|.|+..-....-++ .++..++... .....-=+.++..|...++..- ..|+.+....
T Consensus 259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r-~~~a~lp~~~ 337 (652)
T KOG2376|consen 259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR-ELSASLPGMS 337 (652)
T ss_pred hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHhCCccC
Confidence 22333333322222222 2233333222 1111111222222222110000 1122111111
Q ss_pred hHHHHHHHHHHcCCC-CCcHHHHHHHHh----hcCcCChhHHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCC
Q 048812 322 HGIWVHVYIKKNQIS-IDNIELAYDLFS----EISEKNVYLWTSVIAAYAMAGHAQKAIDLFL--------EMEETGTKP 388 (645)
Q Consensus 322 ~g~~i~~~~~~~~~~-~~~~~~A~~~f~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~p 388 (645)
.-..+-..+.+.... ......|..++. .-+....+.--.++......|+++.|++++. ...+.+..|
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P 417 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP 417 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh
Confidence 000000000000000 001223333332 2223334566677888889999999999999 666655666
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHH
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK-PK----MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIW 461 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~ 461 (645)
-.+ ..+..-+.+.++.+.|..++.+....+... +. ...+.-++..-.+.|+-++|..+++++ . .++|..+.
T Consensus 418 ~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 418 GTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred hHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 544 455566777777777777777666432211 11 233344445556789999999999998 3 55788899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHL 484 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~ 484 (645)
..++.+|+.. |.+.|+.+-+++
T Consensus 496 ~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 496 VQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999876 678888776665
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.32 E-value=5.4e-05 Score=70.27 Aligned_cols=146 Identities=10% Similarity=0.114 Sum_probs=115.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcC
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAG 440 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 440 (645)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..| +...|..|...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4578899999887555433221 11 022236677777777777664 345 6889999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 441 HLEESANFITSM-PIPP-DVSIWSSLLRAC-RCHQN--VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 441 ~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~-~~~g~--~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
++++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..|+..+...|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999987 4555 667788888774 67777 599999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 048812 516 MKLRDMG 522 (645)
Q Consensus 516 ~~m~~~~ 522 (645)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9997754
No 106
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=0.00023 Score=71.02 Aligned_cols=137 Identities=10% Similarity=0.091 Sum_probs=80.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
+|..+|+...-.+...|++++|++.++++++.... |...|+.....+.+.+... +.
T Consensus 140 kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~-------------~~---------- 195 (320)
T PLN02789 140 KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG-------------GL---------- 195 (320)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc-------------cc----------
Confidence 56777887777777888888888888888876544 3444444333333221100 00
Q ss_pred HHHHHHcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 433 VDLLGRAGHLEESANFITS-MPIPP-DVSIWSSLLRACRCH----QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~-m~~~p-d~~~~~~ll~a~~~~----g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
....+++.++..+ +...| |...|+-+...+... ++..+|...+.++.+.+|.++.+...|+++|+...
T Consensus 196 ------~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 196 ------EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred ------cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhh
Confidence 0011223333322 23333 455666666666553 34466778888887788888888888888887632
Q ss_pred ------------------CchHHHHHHHHHH
Q 048812 507 ------------------RLDDMSRIRMKLR 519 (645)
Q Consensus 507 ------------------~~~~a~~~~~~m~ 519 (645)
..++|.++.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 270 QPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2356777777773
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=2.4e-05 Score=68.64 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 048812 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PI 454 (645)
Q Consensus 377 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 454 (645)
+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. ..
T Consensus 15 ~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 15 ILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4444443 33443 44455666777777777777777663 445 4666777777777777777777777776 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 455 PP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 455 ~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
.| +...|..+..++...|+.++|...+++++++.|+++..+....++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34 56677777778888888888888888888888888777766655543
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.01 Score=63.51 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=135.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC-------------CCCcccHHHHHHHHHHcC
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD-------------EPEIKIWNSIIENQLING 118 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-------------~~~~~~~~~li~~~~~~g 118 (645)
|+.+.|.+-...+. +-.+|..+.+|+.+..+++-|.-.+-.|. .++ ..=........+.|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 78888776665553 45789999999999888888877776664 222 22222233336789
Q ss_pred ChhHHHHHHHHHhhcC---chhhccCChHHHHHHHccCCCC-CcchHHHHHHHHHhcCChHHHHHHHHH----------H
Q 048812 119 YPQEVFAIYLYLVTRT---VLLNKCGKLKEVCQLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSK----------M 184 (645)
Q Consensus 119 ~~~~A~~~~~~m~~~~---~~~~~~g~~~~A~~~f~~m~~~-~~~~~n~li~~~~~~g~~~~A~~~~~~----------m 184 (645)
-.++|+.+|++-.+.+ .+|-..|.+++|.++-+.-..- =..+|..-..-+-..++.+.|++.|++ |
T Consensus 815 MlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 9999999999998866 8888999999998876542211 012344444444455667777776664 2
Q ss_pred hhCC---------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccC
Q 048812 185 GAEG---------VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255 (645)
Q Consensus 185 ~~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 255 (645)
+... -.-|...|.-........|+.+.|..+|..+.. |-+++...|-.|+.++|-++-++
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-- 963 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-- 963 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh--
Confidence 2221 012344455555566678899998888877653 33455555556666666666554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 048812 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287 (645)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (645)
..|....--|...|-..|++.+|...|.+.
T Consensus 964 --sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 964 --SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 234444445555666666666666666554
No 109
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.3e-06 Score=55.69 Aligned_cols=35 Identities=31% Similarity=0.559 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (645)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 110
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=1.6e-06 Score=55.19 Aligned_cols=34 Identities=35% Similarity=0.649 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 389 (645)
.+||+||.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.25 E-value=1.9e-05 Score=69.37 Aligned_cols=106 Identities=9% Similarity=-0.036 Sum_probs=91.2
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+++...+ +.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++|
T Consensus 15 ~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444442 45553 556788899999999999999987 4445 678999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 490 ~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++..+..++.++...|++++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999987644
No 112
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.23 E-value=0.002 Score=70.22 Aligned_cols=439 Identities=11% Similarity=0.046 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHH---HHHHHHHcCChhHHHHHHHHH
Q 048812 54 IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS---IIENQLINGYPQEVFAIYLYL 130 (645)
Q Consensus 54 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m 130 (645)
...+..=+...++.. +.|...|..|..+|.++|.+..|.++|++...-++.+|-. ....-.-.|.+.+|+..+...
T Consensus 578 ~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444444444 4577889999999999999999999998876444333322 122235678888888888776
Q ss_pred hhcC------------------------chhhccC-C-------------------------hHHHHHHHccCC------
Q 048812 131 VTRT------------------------VLLNKCG-K-------------------------LKEVCQLFDKLP------ 154 (645)
Q Consensus 131 ~~~~------------------------~~~~~~g-~-------------------------~~~A~~~f~~m~------ 154 (645)
...- .++.+.- - ..+|..+|-...
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 6500 0000000 0 011111111111
Q ss_pred --------------C---------------------CCcchHHHHHHHHHh----c----CChHHHHHHHHHHhhCCCCC
Q 048812 155 --------------N---------------------RDVISWNTMISCYTS----M----GMYREGLGLLSKMGAEGVSP 191 (645)
Q Consensus 155 --------------~---------------------~~~~~~n~li~~~~~----~----g~~~~A~~~~~~m~~~g~~p 191 (645)
. -+..+|..|+..|.+ . .+...|+..+.+.++. ..
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~a 814 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CA 814 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hh
Confidence 0 123345555444433 1 1123455666555543 22
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHH
Q 048812 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSG 270 (645)
Q Consensus 192 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~ 270 (645)
|...|-+.+......|++.-+..-|-...... +....+|..+.-.+.+..+++.|...|.......| |.+.|--+...
T Consensus 815 nn~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali 893 (1238)
T KOG1127|consen 815 NNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALI 893 (1238)
T ss_pred ccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHh
Confidence 33333333333444444444433332222222 44555666666666677777777777776444444 56666666555
Q ss_pred HHhcCCHHHHHHHHHhcc--------cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHH
Q 048812 271 YVKSNERDEARRLFDEMV--------ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL 342 (645)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~--------~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~ 342 (645)
--..|+.-+++.+|..-- -++..-|- |...-....|. +-..+...+ ......-
T Consensus 894 ~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~-----------------c~te~h~~Ng~-~e~~I~t~~-ki~sAs~ 954 (1238)
T KOG1127|consen 894 PEAVGRIIERLILFAHSDELCSKEGKAKKFQYWL-----------------CATEIHLQNGN-IEESINTAR-KISSASL 954 (1238)
T ss_pred HHHHHHHHHHHHHHHhhHHhhccccccchhhHHH-----------------HHHHHHHhccc-hHHHHHHhh-hhhhhHH
Confidence 556666666666665411 11111111 11111111110 000000000 0001122
Q ss_pred HHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 048812 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421 (645)
Q Consensus 343 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 421 (645)
|..-|-.-...+...|.+.....-+.+.+.+|.++..+.+.. ..+-|..+|+.+. ...|++.-+..-|+......+
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak---~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK---PDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhhhcchhhHhhhhc
Confidence 222222222345677888888888888888888887775421 1234555555422 122333333333333333333
Q ss_pred CCCChHHHHHHHHHH--HHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 422 IKPKMQHYGCMVDLL--GRAGHLEESANFITSM----PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 422 ~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m----~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
..|-.+-=..+-..+ .-.|+++++.+.|++. ..+.| ++....++-+....+.-+.|...+-+...+.|.....
T Consensus 1032 ~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~s 1111 (1238)
T KOG1127|consen 1032 KEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASS 1111 (1238)
T ss_pred ccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhh
Confidence 333221111111111 3367888888888886 22334 3345555556667778888888888888877766666
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
...|.-++.-..+-.....+.+++
T Consensus 1112 ll~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1112 LLPLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 666655555444433333344443
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00012 Score=80.64 Aligned_cols=172 Identities=9% Similarity=0.006 Sum_probs=127.8
Q ss_pred hhhHHHHHHHHHHcCCCCC-------cHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HH
Q 048812 320 LYHGIWVHVYIKKNQISID-------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QV 391 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~-------~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ 391 (645)
-+.|+.+|..+.+.--... .+.++.....+-+ .++..+-.|.....+.|.+++|+.+++...+ ..|| ..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~ 121 (694)
T PRK15179 45 EEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSE 121 (694)
T ss_pred hhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHH
Confidence 3456777766544322222 3333333332221 3577788888888999999999999999988 5777 56
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSMP-IPP-DVSIWSSLLRAC 468 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 468 (645)
....+..++.+.+.+++|....++... ..|+ ......+..++.+.|++++|..+|++.- -.| +..+|.++..++
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l 198 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSL 198 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 677788899999999999999988874 5665 6777888889999999999999999872 334 477899999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
...|+.++|...|+++++...+-...|+.
T Consensus 199 ~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 199 TRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999966544455443
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.00034 Score=74.27 Aligned_cols=301 Identities=12% Similarity=0.152 Sum_probs=189.7
Q ss_pred chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC-C--------CCCChhhHHHHHHHHhc
Q 048812 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-G--------VSPDEVTMVSLISARTK 205 (645)
Q Consensus 135 ~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~t~~~ll~~~~~ 205 (645)
++|...|++|.|.+-..-+. +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .+=.-+.-....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 77888999999988776664 5678999999999998888887776666432 1 1222 222222222356
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 048812 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLF 284 (645)
Q Consensus 206 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 284 (645)
.|.+++|+.+|.+-.+.+ -|=..|-..|.+++|.++-+. ..... -.||..-..-+-..++.+.|++.|
T Consensus 813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~--~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAET--KDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhh--ccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 789999999998877654 234567778999999999775 32221 235666666666788899999999
Q ss_pred HhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHH
Q 048812 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~ 364 (645)
++...+-...+ .|+. +.+..-++..+++.++....| -..-
T Consensus 882 EK~~~hafev~-rmL~-------------------------------------e~p~~~e~Yv~~~~d~~L~~W--WgqY 921 (1416)
T KOG3617|consen 882 EKAGVHAFEVF-RMLK-------------------------------------EYPKQIEQYVRRKRDESLYSW--WGQY 921 (1416)
T ss_pred HhcCChHHHHH-HHHH-------------------------------------hChHHHHHHHHhccchHHHHH--HHHH
Confidence 88654322111 1111 023333344445555544443 3344
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 444 (645)
+-..|+.+.|+.+|...+. |.+++...|-.|++++|-++-++- -|....-.|...|-..|++.+
T Consensus 922 lES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred HhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHH
Confidence 4568999999999987653 445666777889999998876542 355566678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-----------hhHHHHHHHHHHcCCchHHHH
Q 048812 445 SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-----------GAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 445 A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-----------~~y~~l~~~~~~~g~~~~a~~ 513 (645)
|..+|.+.+ ++..-|+-|..++--+ +++.-.+.-.|.+- ...---+.+|-++|.+.+|.+
T Consensus 986 Av~FfTrAq------afsnAIRlcKEnd~~d---~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 986 AVKFFTRAQ------AFSNAIRLCKENDMKD---RLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred HHHHHHHHH------HHHHHHHHHHhcCHHH---HHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence 999998763 3444455554443222 12222222222211 112234456778888877776
Q ss_pred H
Q 048812 514 I 514 (645)
Q Consensus 514 ~ 514 (645)
+
T Consensus 1057 l 1057 (1416)
T KOG3617|consen 1057 L 1057 (1416)
T ss_pred H
Confidence 5
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=0.00024 Score=68.42 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 431 CMVDLLGRAGHLEESANFITSM----PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
.+.+.|.+.|++++|...+++. |-.| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788999999999988876 3233 356888999999999999999999888877665
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0018 Score=61.05 Aligned_cols=380 Identities=12% Similarity=0.070 Sum_probs=208.4
Q ss_pred CHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHH-HHHHHHHcCChhHHHHHHHH
Q 048812 53 SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNS-IIENQLINGYPQEVFAIYLY 129 (645)
Q Consensus 53 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~-li~~~~~~g~~~~A~~~~~~ 129 (645)
....+.++...-.+.. +.+..-.+.|-..|-...++..|...++++. .|...-|.. -...+-+.+.+.+|+.+...
T Consensus 25 ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 25 RYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3555555555544443 2245556666677788888888888888765 333322221 12344577788888888887
Q ss_pred HhhcC-----------chhhccCChHHHHHHHccCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCChhhH
Q 048812 130 LVTRT-----------VLLNKCGKLKEVCQLFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTM 196 (645)
Q Consensus 130 m~~~~-----------~~~~~~g~~~~A~~~f~~m~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~ 196 (645)
|...+ .+.-..+++..++.+.++.+ +.+..+-+...-...+.|++++|++-|+...+- |.. ....|
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAY 182 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAY 182 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHH
Confidence 77644 33335677778888888888 456666666666677889999999999888765 444 45567
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC---------------h
Q 048812 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD---------------V 261 (645)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---------------~ 261 (645)
+..+ +..+.++...|.....+++..|+...+...- | |.+..+| +
T Consensus 183 niAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI---------G-----------m~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 183 NLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI---------G-----------MTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------c-----------ceeccCchhcccchHHHHHHHHH
Confidence 7655 4456688999999999999888653332111 0 0111121 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHH
Q 048812 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIE 341 (645)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~ 341 (645)
..+|.-...+.+.|+++.|.+.+..|+..+..
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~------------------------------------------------ 273 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE------------------------------------------------ 273 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccc------------------------------------------------
Confidence 23444445566778888888888877632211
Q ss_pred HHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 048812 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421 (645)
Q Consensus 342 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 421 (645)
+-|.+|...+.-. -..+++.+..+-+.-+..... --..||..++-.||+..-++.|-.++.+-.. ..
T Consensus 274 ----------elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~-lT 340 (459)
T KOG4340|consen 274 ----------ELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAH-LT 340 (459)
T ss_pred ----------cCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hh
Confidence 1233333222111 113444444444444444322 2356888888888888877777776643220 00
Q ss_pred CC-CChHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChH----HHHHHHHHHHhcCCCCchh
Q 048812 422 IK-PKMQHYGCMVDLLGR-AGHLEESANFITSMPIPPDVSIWSSLLRA-CRCHQNVK----LAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 422 ~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~pd~~~~~~ll~a-~~~~g~~~----~a~~~~~~~~~~~p~~~~~ 494 (645)
.. .+...|+ |++++.- .-..++|++-++.+...-....-..-+.. -.++.+-+ .+.+-+++.+++.- .+
T Consensus 341 yk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PV 416 (459)
T KOG4340|consen 341 YKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PV 416 (459)
T ss_pred HHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HH
Confidence 00 1122222 3333332 33556666555443110000000111111 01111211 22233333333221 23
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
...-...|.+..++..++++|..-.+
T Consensus 417 lMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 417 LMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHh
Confidence 44556778888889999998876544
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00014 Score=74.60 Aligned_cols=187 Identities=18% Similarity=0.198 Sum_probs=125.3
Q ss_pred HHhcCChHHHHHHHhhCCC--C-CcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcc
Q 048812 83 LVFTGDLGYAQQIIRQGDE--P-EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVI 159 (645)
Q Consensus 83 ~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~ 159 (645)
+.+.|++.+|.-.|+.... | +...|--|....+.+++-..|+..+++.. ++...|..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl--------------------~LdP~Nle 354 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL--------------------ELDPTNLE 354 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH--------------------hcCCccHH
Confidence 3455666666666665432 2 34556666665555555444544444432 12234667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--------CChhhHHHHHHHHhcCCChHHHHHHHHHHHH-hCCCCchhH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVS--------PDEVTMVSLISARTKLRDLEMGKNLHLFLEE-STMKISGSL 230 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~ 230 (645)
+.-+|.-.|...|.-.+|+++++.-+....+ ++..+-.. +.......+....++|-.+.. .+..+|+.+
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 7778888899999999999999887654211 00000000 122222334455566655544 444588899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc--cCC
Q 048812 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV--ERN 291 (645)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~ 291 (645)
...|.-.|--.|+++.|...|+.....+| |...||-|...++...+.++|+..|.+.. +|+
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998766677 78899999999999999999999999886 454
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.11 E-value=0.019 Score=67.30 Aligned_cols=358 Identities=11% Similarity=0.000 Sum_probs=202.7
Q ss_pred ccHHHHHHHHHHcC----ChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcch--HHHHHHHHHhcCChHHHH
Q 048812 105 KIWNSIIENQLING----YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVIS--WNTMISCYTSMGMYREGL 178 (645)
Q Consensus 105 ~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~--~n~li~~~~~~g~~~~A~ 178 (645)
+.|+.++..+++.. .+.+..++..+.- ..+...|++.+|..........+... ...........|+++.+.
T Consensus 318 yr~H~L~r~~l~~~l~~~~~~~~~~lh~raa---~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~ 394 (903)
T PRK04841 318 FRYHPLFASFLRHRCQWELAQELPELHRAAA---EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLE 394 (903)
T ss_pred EehhHHHHHHHHHHHHhcCchHHHHHHHHHH---HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHH
Confidence 45677776665432 3444444444332 22445677777777666665432221 111122344567777766
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC------CCc--hhHHHHHHHHHHHcCCHHHHHHH
Q 048812 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM------KIS--GSLLNYLVDMYFKCGKIGEAQKL 250 (645)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~ 250 (645)
+.+..+.......+..........+...++++++...+..+...-- .+. ......+...+...|++++|...
T Consensus 395 ~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 474 (903)
T PRK04841 395 ECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERL 474 (903)
T ss_pred HHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666653221111222222233344566788888777776654310 111 11222233455677888888877
Q ss_pred HcccCC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHH
Q 048812 251 LGRYEI--DEVD----VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324 (645)
Q Consensus 251 ~~~m~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~ 324 (645)
+++... ...+ ...++.+...+...|++++|...+++....
T Consensus 475 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~---------------------------------- 520 (903)
T PRK04841 475 AELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM---------------------------------- 520 (903)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------------
Confidence 766321 1112 123455556667788888888777665421
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHhhcCcC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHH
Q 048812 325 WVHVYIKKNQISIDNIELAYDLFSEISEK--NVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTK--P-DQVTFIA 395 (645)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-d~~t~~~ 395 (645)
......+ -..+++.+...+...|++++|...+++.... |.. | ....+..
T Consensus 521 ----------------------~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 521 ----------------------ARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred ----------------------HhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 1111011 1234456667788899999999998886642 221 1 2233444
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcC-CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHH-----H
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRVYN-IKP--KMQHYGCMVDLLGRAGHLEESANFITSM----PIPPDVSIWS-----S 463 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd~~~~~-----~ 463 (645)
+...+...|++++|...+++...... ..+ ....+..+...+...|++++|.+.+++. ........+. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 45566778999999999888763211 112 2344555667888999999999887765 1111111111 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchh----HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGA----HVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~----y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.+..+...|+.+.|...+.......+..... +..+..++...|++++|...+++....
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2234556899999999987766533222211 356788899999999999999887653
No 119
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=5.6e-06 Score=52.30 Aligned_cols=33 Identities=39% Similarity=0.632 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 388 (645)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 120
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=5.1e-06 Score=52.50 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 048812 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191 (645)
Q Consensus 158 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p 191 (645)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00051 Score=69.37 Aligned_cols=186 Identities=18% Similarity=0.117 Sum_probs=133.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCc------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISE------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 401 (645)
.++..+.+..+++.+++..-+.++. ++...+...+.+.........+-.++. +... ..-...-|..-+ ...
T Consensus 241 ~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~ 317 (484)
T COG4783 241 EYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTY 317 (484)
T ss_pred hHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHH
Confidence 4555666777788888888887775 344555566655443333333333322 2222 111223333333 455
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAE 478 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~ 478 (645)
..|..++|+..++.+... .| |+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 678999999999998853 45 5667778889999999999999999987 55666 677888899999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 479 ~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
.+++.....+|+++..|..|..+|...|+..++...+.++-
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999998888877777666553
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.08 E-value=0.00089 Score=75.36 Aligned_cols=163 Identities=10% Similarity=0.159 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 435 (645)
..|..|...|.+.+++++|.++|+.|.+. ..-....|...+..+.+...-+.|..++..+.+...-.-.+....-.+++
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 45778889999999999999999999875 44567788899999999999999999999888532111135556677788
Q ss_pred HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCch-hHHHHHHHHHHcCCchH
Q 048812 436 LGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD--PLNDG-AHVLLANIYAKAGRLDD 510 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~~-~y~~l~~~~~~~g~~~~ 510 (645)
-.+.|+.+.+..+|+.. ..+.-.-.|+.++..-.++|+.+.++.+|++++.+. |.... .|--.+..--+.|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999886 222345689999999999999999999999999865 43333 44455555556677666
Q ss_pred HHHHHHHHH
Q 048812 511 MSRIRMKLR 519 (645)
Q Consensus 511 a~~~~~~m~ 519 (645)
++.+-.+..
T Consensus 1690 vE~VKarA~ 1698 (1710)
T KOG1070|consen 1690 VEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHH
Confidence 555544443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00014 Score=67.63 Aligned_cols=135 Identities=17% Similarity=0.165 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 048812 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSS 463 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ 463 (645)
..|+......+-.++.-.|+-+.+..+....... -.-+......++....+.|++.+|...|++. +-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 4554333356667777888888888877765532 2234556667888999999999999999987 45678889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+.-+|-+.|+.+.|...+.+.+++.|.++..+..|.-.|.-.|++++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998876644
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.08 E-value=8e-05 Score=64.45 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
....-.+...+...|++++|.++|+-+ ...| +..-|-.|..+|...|++++|+..|.++..++|+++.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455556667778899999999999887 4445 56788999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 048812 504 KAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 504 ~~g~~~~a~~~~~~m~~ 520 (645)
..|+.+.|++.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998755
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.06 E-value=0.00016 Score=67.20 Aligned_cols=128 Identities=12% Similarity=-0.021 Sum_probs=85.7
Q ss_pred cCChHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH-hcCCC--hHHHH
Q 048812 140 CGKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR-TKLRD--LEMGK 213 (645)
Q Consensus 140 ~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~--~~~a~ 213 (645)
.++.+++...++... ..|...|..|...|...|++++|+..|++..+.. +-+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344555555554433 2467788888888888888888888888887763 22445666666553 55565 47888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHH
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~ 269 (645)
+++..+++.+ +.+..++..+...+.+.|++++|...|+.+....|.......+|.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 8888888776 556777777888888888888888888875444443333344443
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.00 E-value=0.00022 Score=75.12 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=40.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
+..+||.+-.+|.+.|+-.+|...+.+..+.. .-+...+-+.+....+.|.+++|.+.+.++..
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 34567777777777777777777777776655 22334444445555666777777776666653
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.98 E-value=0.00011 Score=63.87 Aligned_cols=100 Identities=13% Similarity=0.210 Sum_probs=74.3
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 422 IKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 422 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 445566667777778888888777775 3333 566777777778888888888888888888888888888888
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
..+|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888777653
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.0015 Score=72.90 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
-+.++--|-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34556666677888999999999999999999999888877887776
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.0008 Score=62.63 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=121.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 048812 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438 (645)
Q Consensus 359 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 438 (645)
...-..+-..|+.+.+..+..+.... ..-|..............|++.+|...|++..+ .-.+|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 45566777788888888777665432 223444555677888889999999999988874 334578899999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 048812 439 AGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 439 ~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
.|++++|..-|.+. .+.| ++...+.|.-.+.-.|+.+.|+.++.......+.++.+-..|.-+....|++++|+.+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999877765 4444 566778888888899999999999999988888888888888889999999999888753
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00017 Score=73.39 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=82.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQ 472 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g 472 (645)
+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+......|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 4444555556666666666666532 243 2333555555566666666666554 2223 5556666666688888
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 473 ~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+.+.|+.+++++.+..|.+..+|..|+.+|...|++++|.-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88999999999999999888899999999999999999988887764
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.0013 Score=72.62 Aligned_cols=120 Identities=9% Similarity=0.067 Sum_probs=68.3
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCc--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISE--K-NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-VTFIALLSACSHG 403 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~ 403 (645)
..+.+.+...+..++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+. .....+..++...
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 3344444445566666666665543 2 3445555666666666666666666666653 4443 3334444455666
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 404 GLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 404 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
|+.++|..+|+++.. -.|+ ...+..+..++-..|+.++|...|++.
T Consensus 168 g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 168 GQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred cchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666663 1232 555666666666666666666666655
No 132
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.5e-05 Score=49.10 Aligned_cols=31 Identities=32% Similarity=0.753 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (645)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
No 133
>PLN02789 farnesyltranstransferase
Probab=97.88 E-value=0.0049 Score=61.64 Aligned_cols=129 Identities=11% Similarity=0.016 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLR-DLEMGKNLHLFLEESTMKISGSLLNYLVDM 237 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 237 (645)
+++.+-..+...++.++|+.++.++++. .|+.. .|+.--.++...+ +++++...+..+++.. +.+..+|+...-.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3445555566677888888888888765 44443 3444444444555 5678888888887765 4455566655555
Q ss_pred HHHcCCH--HHHHHHHcccCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 048812 238 YFKCGKI--GEAQKLLGRYEID-EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291 (645)
Q Consensus 238 y~~~g~~--~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 291 (645)
+.+.|.. +++..+++.+... ..|..+|+-....+.+.|++++|++.++++.+.|
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 5556652 5667777554333 4478889998888889999999999999887654
No 134
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=1.9e-05 Score=48.57 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 386 (645)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.82 E-value=0.0037 Score=69.80 Aligned_cols=181 Identities=12% Similarity=0.137 Sum_probs=124.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 242 (645)
.++.......++.-...+...|... .-+...+-.+..+|-+.|+.+++.++++++++.. +.|+.+.|.+...|+..
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 4455555555554444444555543 2345578888899999999999999999999988 77899999999999999
Q ss_pred CHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
++++|.+++.+ .+..|....++.++.+++.++..-++.-...++.
T Consensus 164 dL~KA~~m~~K-------------AV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~---------------------- 208 (906)
T PRK14720 164 DKEKAITYLKK-------------AIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLR---------------------- 208 (906)
T ss_pred hHHHHHHHHHH-------------HHHHHHhhhcchHHHHHHHHHHhcCcccchHHHH----------------------
Confidence 99999999887 4455888889999999999988555443222220
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 401 (645)
+...+...- ...+-+.++--+-..|-..+++++++.+++...+.... |......++.+|.
T Consensus 209 ---i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 209 ---IERKVLGHR---------------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---HHHHHHhhh---------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 000111000 01244566667777888888899999999998875322 4566666666654
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.78 E-value=0.002 Score=65.26 Aligned_cols=141 Identities=21% Similarity=0.196 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI-ALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLG 437 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 437 (645)
-..-.+...|++++|+..++.+... .||..-|. .....+...++..+|.+.++.+.. ..|+ ....-.+.++|.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all 385 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHH
Confidence 3344455789999999999998875 56655555 445688999999999999999985 5776 566777889999
Q ss_pred HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 438 RAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... ...|...|+|++|....
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFL 448 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHH
Confidence 999999999999987 44458889999999999999977666554 56688889999999999
Q ss_pred HHHHhCC
Q 048812 516 MKLRDMG 522 (645)
Q Consensus 516 ~~m~~~~ 522 (645)
...+++.
T Consensus 449 ~~A~~~~ 455 (484)
T COG4783 449 MRASQQV 455 (484)
T ss_pred HHHHHhc
Confidence 8887754
No 137
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.78 E-value=0.012 Score=56.93 Aligned_cols=243 Identities=14% Similarity=0.178 Sum_probs=166.8
Q ss_pred CCCCcHHHHHHHHhhcCcCChhHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCcHHHHH
Q 048812 335 ISIDNIELAYDLFSEISEKNVYLWTSVI---AAYAMAGHAQKAIDLFLEMEETGTKPDQVTF-IALLSACSHGGLVDEGY 410 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~g~~~~a~ 410 (645)
+..+.+.+|+.-|....+-|...|.++. ..|...|+...|+.=+.+.++ .+||-..- .--...+.+.|.+++|.
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHH
Confidence 3445788999999888887777776664 578889999999999988887 58884322 12223567899999999
Q ss_pred HHHHHhHHhcCCCCC----hHHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 048812 411 DFLSKKSRVYNIKPK----MQHYG------------CMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQ 472 (645)
Q Consensus 411 ~~~~~~~~~~~~~p~----~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g 472 (645)
.=|+...+. .|+ .+++. ..+..+.-.|+...|..++..+ .+.| |...+..=..+|...|
T Consensus 127 ~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 127 ADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 999988842 332 22222 2233456678999999998887 5555 6667777778888999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChH
Q 048812 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552 (645)
Q Consensus 473 ~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~ 552 (645)
++..|+.-++.+-++..++...+.-++.++...|+.+++....++-.+.+. .|...-
T Consensus 204 e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp-----------------------dHK~Cf 260 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP-----------------------DHKLCF 260 (504)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc-----------------------chhhHH
Confidence 999999999999999999999999999999999999988887777655331 222222
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhhhHHHHHHhhhccCCCC-CeEEEEcccccc
Q 048812 553 EIYLMLNEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEK-TTIRIVNNLRIC 605 (645)
Q Consensus 553 ~~~~~l~~l~~~m~~~g~~~~~~~~se~la~~~~l~~~~~~-~~~~~~~n~~~c 605 (645)
--|..|+++...+....-.-+.....+.++..-.++.+.|. .+||+----++|
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 23444444433332221111113445667777777777666 666654434444
No 138
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.07 Score=54.98 Aligned_cols=365 Identities=15% Similarity=0.110 Sum_probs=203.5
Q ss_pred HHHHHcCChhHHHHHHHHHhhcC-----------chhhccCChHHHHHHHccCCC--CC-cchHHHHHHHHHhcCChHHH
Q 048812 112 ENQLINGYPQEVFAIYLYLVTRT-----------VLLNKCGKLKEVCQLFDKLPN--RD-VISWNTMISCYTSMGMYREG 177 (645)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~--~~-~~~~n~li~~~~~~g~~~~A 177 (645)
.+....|+++.|+.+|-..+..+ ..|.+.|++++|.+=-.+-.+ |+ .-.|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 34567899999999999988744 677788999888765444432 33 24688888888888999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHhcC---CChHHHHHHHHHHHHh----CCCCchhHHHHHHHH----------HHH
Q 048812 178 LGLLSKMGAEGVSPDEVTMVSLISARTKL---RDLEMGKNLHLFLEES----TMKISGSLLNYLVDM----------YFK 240 (645)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~----------y~~ 240 (645)
+.-|.+=++.. +-|...++.+..+.... ++.-..-.+|..+... +. .....|..++.. |..
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~-~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYS-LSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhh-hccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999877652 33456777787776211 0000000111111100 00 000111111111 111
Q ss_pred cCCHHHHHHHHccc--------------CCCCC------------Ch----------hhHHHHHHHHHhcCCHHHHHHHH
Q 048812 241 CGKIGEAQKLLGRY--------------EIDEV------------DV----------VLWTTLVSGYVKSNERDEARRLF 284 (645)
Q Consensus 241 ~g~~~~A~~~~~~m--------------~~~~~------------~~----------~~~~~li~~~~~~g~~~~A~~~~ 284 (645)
-..+..|..++... .+..| |. .-...+..+..+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11122222222110 00011 10 12445666667777777887777
Q ss_pred HhcccCC-chhHHHHH-HhhhccCCchhh-hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHH
Q 048812 285 DEMVERN-LISWTLMI-SGMLNQDAEFKY-KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSV 361 (645)
Q Consensus 285 ~~m~~~~-~~t~~~ll-~~~~~~~~~~~~-~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~l 361 (645)
....+.+ ..++...+ .+|...|..... ..|.. .++.|++...... .+ ..+...+
T Consensus 248 ~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~--a~E~gre~rad~k-----------------lI----ak~~~r~ 304 (539)
T KOG0548|consen 248 AKALELATDITYLNNIAAVYLERGKYAECIELCEK--AVEVGRELRADYK-----------------LI----AKALARL 304 (539)
T ss_pred HHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHH--HHHHhHHHHHHHH-----------------HH----HHHHHHh
Confidence 7665332 23333322 233333210000 11111 2222222111100 00 0112224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-------------------------HHHHHHHHhccCcHHHHHHHHHHh
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVT-------------------------FIALLSACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-------------------------~~~ll~a~~~~g~~~~a~~~~~~~ 416 (645)
..+|.+.++++.|+..|.+.......||..+ ...=.+.+.+.|++..|...+.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4456666777777777776655544444332 112234566789999999999999
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 417 SRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 417 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
++. .| |...|..-.-+|.+.|.+..|++=-+.. ...|+ ...|.-=..++....+++.|.+.|++.++.+|.+..
T Consensus 385 Ikr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 385 IKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred Hhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 852 46 5888999999999999999988755543 44454 334544455566677999999999999999998876
Q ss_pred hHHHHHHHHHH
Q 048812 494 AHVLLANIYAK 504 (645)
Q Consensus 494 ~y~~l~~~~~~ 504 (645)
.-.-+.+++..
T Consensus 462 ~~~~~~rc~~a 472 (539)
T KOG0548|consen 462 AIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHH
Confidence 65555555544
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.73 E-value=0.076 Score=54.73 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=76.0
Q ss_pred CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCC--C-CcchHHHHHHHHHhcCChHHH
Q 048812 101 EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN--R-DVISWNTMISCYTSMGMYREG 177 (645)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g~~~~A 177 (645)
+-|+.+|+.||.-+- ...+++++..++++.. | ....|..-|++-....+++..
T Consensus 17 P~di~sw~~lire~q------------------------t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~V 72 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQ------------------------TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESV 72 (656)
T ss_pred CccHHHHHHHHHHHc------------------------cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHH
Confidence 458889999998752 2255666666666553 3 456788889999999999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHhc-CCChHH----HHHHHHHH-HHhCCCC-chhHHHHHHHH---------HHHc
Q 048812 178 LGLLSKMGAEGVSPDEVTMVSLISARTK-LRDLEM----GKNLHLFL-EESTMKI-SGSLLNYLVDM---------YFKC 241 (645)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~----a~~~~~~~-~~~g~~~-~~~~~~~li~~---------y~~~ 241 (645)
..+|.+-+..-+. ...|..-|.---+ .++... ..+.|+.. .+.|+++ ....|+..++. |...
T Consensus 73 EkLF~RCLvkvLn--lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~ 150 (656)
T KOG1914|consen 73 EKLFSRCLVKVLN--LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN 150 (656)
T ss_pred HHHHHHHHHHHhh--HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH
Confidence 9999887765333 3334333332222 222222 22333333 3445443 23345554443 4445
Q ss_pred CCHHHHHHHHccc
Q 048812 242 GKIGEAQKLLGRY 254 (645)
Q Consensus 242 g~~~~A~~~~~~m 254 (645)
.+++..+++++++
T Consensus 151 QRI~~vRriYqra 163 (656)
T KOG1914|consen 151 QRITAVRRIYQRA 163 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 5677788888885
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.73 E-value=0.0011 Score=57.47 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=82.7
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 048812 377 LFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-P 453 (645)
Q Consensus 377 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 453 (645)
+|++... ..|+ ......+...+...|+.++|.+.|+.+.. ..| +...+..+...+.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 3443 34455666677788888888888888774 234 5677778888888888888888888776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 454 IPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 454 ~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
..| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 334 5677777888899999999999999999999997754
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.013 Score=54.81 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=105.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH----HH
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL----GR 438 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~ 438 (645)
..|...|++++|++...... ..+.... =...+.+..+++-|.+.++.|.+ +. +-.+.+-|..++ .-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhcc
Confidence 45677888888888776521 1122222 22344566778888888888873 22 334444444443 44
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHH-HHH
Q 048812 439 AGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS-RIR 515 (645)
Q Consensus 439 ~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~-~~~ 515 (645)
.+.+.+|.-+|++| +..|+..+.+....++...|++++|+.+++.++..++.++.+...++-.-.-.|+-.++. +.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 56788999999998 377899999999999999999999999999999999999888888887777788876654 455
Q ss_pred HHHHh
Q 048812 516 MKLRD 520 (645)
Q Consensus 516 ~~m~~ 520 (645)
.+.+.
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 55543
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00039 Score=55.27 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
+..+...+...|++++|.+.+++. ...| +...+..+...+...++++.|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888775 3334 34667777778888899999999999998888888788888888999999
Q ss_pred CchHHHHHHHHHHh
Q 048812 507 RLDDMSRIRMKLRD 520 (645)
Q Consensus 507 ~~~~a~~~~~~m~~ 520 (645)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888877654
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0017 Score=57.10 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYG 430 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 430 (645)
...|..++..+. .++...+...++.+......-. ......+...+...|++++|...|+..... .-.|. ....-
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 344555555553 6666666666666665421110 122233334555666666666666666632 21121 12223
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048812 431 CMVDLLGRAGHLEESANFITSMPIP-PDVSIWSSLLRACRCHQNVKLAEHAFKH 483 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~ 483 (645)
.|...+...|++++|+..++..+.. .....+..+...+...|+.++|...|++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455555556666666655554211 1223334444445555555555555544
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0023 Score=56.27 Aligned_cols=124 Identities=14% Similarity=0.114 Sum_probs=88.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-h---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--hhHHHH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-V---TMVSLISARTKLRDLEMGKNLHLFLEESTMKIS--GSLLNY 233 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 233 (645)
.|..++..+ ..++...+...++.+.... |+. . ....+...+...|++++|...+..++.....++ ....-.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 455556555 4788888888888888763 332 2 233345667788999999999999888763332 223445
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 234 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
|...+...|++++|...++...........+......|.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67888889999999999987322233556677788889999999999998875
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.00095 Score=56.23 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=47.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACR 469 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~ 469 (645)
+...+...|++++|.+.|..+.+.++-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33344444444455544444443211111 1223333444555555555555555443 11122 334555555566
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchh
Q 048812 470 CHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
..|+.+.|...++++++..|+++..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChhH
Confidence 6666666666666666666665443
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.61 E-value=0.0011 Score=67.70 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc
Q 048812 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241 (645)
Q Consensus 162 n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 241 (645)
.+|+..+...++++.|+++|+++.+.. |+. ...+++.+...++-.+|.++..+.++.. +.+..........+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 355666677899999999999999873 553 4457777777788888999988888654 55677777778889999
Q ss_pred CCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 242 GKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 242 g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++.+.|.++.++.....| +..+|..|..+|.+.|+++.|+..++.++
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999998655567 55699999999999999999999999886
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=8.2e-05 Score=58.49 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 440 GHLEESANFITSM----PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 440 g~~~~A~~~~~~m----~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
|++++|..+++++ +..|+...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5555555555554 2112344555566667777777777777776 5555655556666677777777777777776
Q ss_pred HH
Q 048812 516 MK 517 (645)
Q Consensus 516 ~~ 517 (645)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0053 Score=56.87 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=109.6
Q ss_pred cHHHHHHHHhhcCc--------CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccCcHHH
Q 048812 339 NIELAYDLFSEISE--------KNV-YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL-SACSHGGLVDE 408 (645)
Q Consensus 339 ~~~~A~~~f~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~ 408 (645)
+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+= .-+-..|..++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhh
Confidence 55666666655532 222 23444555556677777777777777665 2 4432221111 12334677777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
|.++++.+.++- +.|..+|..=+-+.-..|+--+|.+-+.+. .+..|...|.-|..-|...|+++.|.-.+++++=
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888887777531 224566655555566666666666555544 3556777888888888888888888888888888
Q ss_pred cCCCCchhHHHHHHHHHHcCC---chHHHHHHHHHHhC
Q 048812 487 TDPLNDGAHVLLANIYAKAGR---LDDMSRIRMKLRDM 521 (645)
Q Consensus 487 ~~p~~~~~y~~l~~~~~~~g~---~~~a~~~~~~m~~~ 521 (645)
+.|.++..+..+++.+.-.|- .+-|.+++.+..+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 888777777777777655543 34466666665543
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.001 Score=56.05 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN---DGAHVLL 498 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~y~~l 498 (645)
.++-.++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...++++....|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999887 33343 3466778888999999999999999999988875 4678889
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
..+|...|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999997754
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.0012 Score=67.41 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=46.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~ 475 (645)
.+...|++++|.+.|+++.+ +.| +...|..+..+|.+.|++++|...+++. .+.| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 33444555555555555553 233 2344444555555555555555555444 2223 3334444555555555555
Q ss_pred HHHHHHHHHHhcCCCCchhHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~ 496 (645)
+|+..|+++++++|.++....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 555555555555555544333
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.53 E-value=0.00026 Score=53.15 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG-RLDDMSRIRMKLRD 520 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g-~~~~a~~~~~~m~~ 520 (645)
++.+|..+...+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999988755
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.005 Score=65.86 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+..+|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|...+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555554444455666666666666666666 34566666666666666666666666654443
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.079 Score=52.93 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~ 469 (645)
..+.+..+.-|...|....|.++-. ++.+ |+..-|-..+.+|+..|+|++-.++... +..+.-|...+.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 3455666777777888887776644 4554 8999999999999999999998887664 345688999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
..|+..+|..+..++ .+..-+.+|.++|.|.+|.+.--+.+
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999888772 22456789999999999988755443
No 154
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.45 E-value=0.19 Score=51.92 Aligned_cols=406 Identities=10% Similarity=0.103 Sum_probs=233.5
Q ss_pred CChhhHHHHHhhc--CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHHHHHHH
Q 048812 39 PVSLDVIMVERSC--SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQ 114 (645)
Q Consensus 39 p~~~~~~~~l~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~ 114 (645)
-|..+|..+++-. +..++++..++.+.+. ++.++..|..-+..-.+..+++..+++|.+.. .-++..|..-|+--
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 4566788888876 5788899999988754 46678899999999999999999999999865 45777888877643
Q ss_pred HH-cCChhH----HHHHHHHHhhcC-----------------------chhhccCChHHHHHHHccCCC-C---------
Q 048812 115 LI-NGYPQE----VFAIYLYLVTRT-----------------------VLLNKCGKLKEVCQLFDKLPN-R--------- 156 (645)
Q Consensus 115 ~~-~g~~~~----A~~~~~~m~~~~-----------------------~~~~~~g~~~~A~~~f~~m~~-~--------- 156 (645)
.+ .|+... -.+.|+-.+... .-|....+++..++++.++.. |
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 32 222222 222333222210 334455577778888887753 2
Q ss_pred CcchHHHHHHHH-------HhcCChHHHHHHHHHHhh--CCCCCChhh---------------HHHHHHHHhcCCChH--
Q 048812 157 DVISWNTMISCY-------TSMGMYREGLGLLSKMGA--EGVSPDEVT---------------MVSLISARTKLRDLE-- 210 (645)
Q Consensus 157 ~~~~~n~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~~~~~-- 210 (645)
|-..|..=|... -+...+..|.++++++.. .|..-+..+ |..+|. +.+.+-+.
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksNpL~t~ 255 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcCCcccc
Confidence 222232222211 123345667777777643 243222222 322332 12221111
Q ss_pred -------HHHHHHHHH-HHhCCCCchhHHHH-----HHHHHHHcCC-------HHHHHHHHcccCCC--CCChhhHHHHH
Q 048812 211 -------MGKNLHLFL-EESTMKISGSLLNY-----LVDMYFKCGK-------IGEAQKLLGRYEID--EVDVVLWTTLV 268 (645)
Q Consensus 211 -------~a~~~~~~~-~~~g~~~~~~~~~~-----li~~y~~~g~-------~~~A~~~~~~m~~~--~~~~~~~~~li 268 (645)
...-+|++. .-.++.|+.....+ .-+.+...|+ .+++.+++++.... ..+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222 22344454432211 1123333343 56777888762111 12344444443
Q ss_pred HHHH---hcCCHHHHHHHHHhcc-----cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcH
Q 048812 269 SGYV---KSNERDEARRLFDEMV-----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI 340 (645)
Q Consensus 269 ~~~~---~~g~~~~A~~~~~~m~-----~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~ 340 (645)
.--- .....+.....+++.. +++ .+|-..+..-.+.. .+
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~e--------------------------------Gl 382 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAE--------------------------------GL 382 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhh--------------------------------hH
Confidence 2111 1112444455555544 333 34545554444332 46
Q ss_pred HHHHHHHhhcCc-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048812 341 ELAYDLFSEISE-----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415 (645)
Q Consensus 341 ~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 415 (645)
+.|+.+|.+..+ ..+...+++|.-|+ .++..-|..+|+-=.+. ..-+..--...+.-+++.++-..+..+|+.
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 677777766554 36778889998887 47788999999874432 222233345667777888899999999999
Q ss_pred hHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048812 416 KSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSM----P--IPPDVSIWSSLLRACRCHQNVKLAEHAFK 482 (645)
Q Consensus 416 ~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m----~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 482 (645)
.... ++.|+ ...|..+++-=...|++..+.++-+++ + ..|....-..+++-|...+...--..-++
T Consensus 461 ~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 461 VLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred HHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 9964 77776 689999999999999999999988776 2 22222334455666666665544333333
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.44 E-value=0.28 Score=53.80 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccc
Q 048812 460 IWSSLLRACRCHQNV---KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~---~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 526 (645)
+-+.|+..|++.++. -+|+-+++..+...|.|...-..|+.+|+-.|-...|.++++.+.-+.+..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 446788889988875 4677778888888999988888999999999999999999998866665543
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.0057 Score=55.54 Aligned_cols=131 Identities=13% Similarity=0.173 Sum_probs=92.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
....|..+...+...|++++|+..|++.......|. ...+..+...+.+.|++++|...+++..+ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 445677777888888999999999988876543332 35677777888888899999888888774 344 355666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
.+...|...|+...+..-++.. ...+++|.+.+++++..+|++ |..++..+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 6677777777766655333221 123678889999999988876 66677777766653
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.25 Score=52.44 Aligned_cols=201 Identities=20% Similarity=0.165 Sum_probs=120.4
Q ss_pred CCChhhhhhHHHHHHhcCChHHHHHHHhhCCC-CCcc------------cHHHHHHHHHHcCChhHHHHHHHHHhhcC--
Q 048812 70 MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE-PEIK------------IWNSIIENQLINGYPQEVFAIYLYLVTRT-- 134 (645)
Q Consensus 70 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 134 (645)
.|.+.+|..|.......-.++.|+..|-+... +.+. .-.+=|++| -|.+++|..+|-.|-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 46777887777766666677777777765442 1111 011122222 366777777777776666
Q ss_pred -chhhccCChHHHHHHHccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 135 -VLLNKCGKLKEVCQLFDKLPN-----RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 135 -~~~~~~g~~~~A~~~f~~m~~-----~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
.++.+.|++-...++++.-.. --..+|+.+..-++....+++|.+.|..-... ...+.++....+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 566666777666666654221 12346777777777777777777776543211 113333433333
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
+++-+.+ ...++.+....-.+.+|+...|.-++|.+.|-+ -..|. +-+..|...++|.+|.++-+...
T Consensus 838 f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr--~s~pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 838 FGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR--RSLPK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred hhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHh--ccCcH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 3332222 123456667777788888888988888888766 44332 34567788888888888877766
Q ss_pred cCCch
Q 048812 289 ERNLI 293 (645)
Q Consensus 289 ~~~~~ 293 (645)
-|.+-
T Consensus 906 l~qv~ 910 (1189)
T KOG2041|consen 906 LPQVQ 910 (1189)
T ss_pred chhHH
Confidence 55543
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.37 E-value=0.00052 Score=50.80 Aligned_cols=58 Identities=28% Similarity=0.296 Sum_probs=44.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+...+...|++++|+..|+++++..|.++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888888888888888888888888877553
No 159
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.07 Score=50.08 Aligned_cols=172 Identities=20% Similarity=0.135 Sum_probs=101.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCC-c
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN-L 292 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 292 (645)
++.+.+.......+......-...|++.|++++|.+.... .. +......=+..+.+..+.+-|.+.+++|.+-| .
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~--~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL--GE--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc--cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 3444444444444444444445668888889998888876 32 23333333445667778888888888888654 3
Q ss_pred hhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcC
Q 048812 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAG 369 (645)
Q Consensus 293 ~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 369 (645)
.|.+.+-++|++. ......+.+|.-+|+++.+ |+..+.|-+..++...|
T Consensus 170 ~tLtQLA~awv~l----------------------------a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 170 ATLTQLAQAWVKL----------------------------ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHH----------------------------hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 4444455444321 1111256677777777766 45555566666677777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHhHH
Q 048812 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE-GYDFLSKKSR 418 (645)
Q Consensus 370 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~ 418 (645)
++++|..++++..... .-|..|...++.+-.+.|...+ -.+...+++.
T Consensus 222 ~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7777777777777653 2245666666655555554433 3344455553
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.35 E-value=0.0026 Score=57.84 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
...+..+...+.+.|++++|...+++. ...|+ ...|..+...+...|+++.|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344555666666666777666666654 22222 3567778888888899999999999999988888888888888
Q ss_pred HHHHcCC
Q 048812 501 IYAKAGR 507 (645)
Q Consensus 501 ~~~~~g~ 507 (645)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.00076 Score=50.37 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=41.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888876654
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.26 E-value=0.25 Score=50.01 Aligned_cols=72 Identities=22% Similarity=0.185 Sum_probs=58.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 446 ANFITSMPIPP----DVSIWSSLLRA--CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 446 ~~~~~~m~~~p----d~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+.++++.++.| +...-|.|..| +..+|++.++.-.-.=+.++.| ++.+|..++-......++++|..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34555666655 44566777777 6789999999988888889999 7799999999999999999999999765
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.25 E-value=0.0033 Score=56.86 Aligned_cols=93 Identities=13% Similarity=-0.039 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
...|..+...+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666677777788888888887776 22232 3478888899999999999999999999999998888888888
Q ss_pred HHH-------HcCCchHHHHHHHHH
Q 048812 501 IYA-------KAGRLDDMSRIRMKL 518 (645)
Q Consensus 501 ~~~-------~~g~~~~a~~~~~~m 518 (645)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 777877666655543
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.21 E-value=0.11 Score=51.31 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC--h
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-----PDQV-TFIALLSACSHGGLVDEGYDFLSKKSRVY-NIKPK--M 426 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~ 426 (645)
..+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...|++..|.+.|+...... ++..+ .
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 34567788899999999999999998764322 2222 33444446667889999999998876321 22222 3
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 048812 427 QHYGCMVDLLGR--AGHLEESANFITSMP 453 (645)
Q Consensus 427 ~~~~~li~~~~~--~g~~~~A~~~~~~m~ 453 (645)
.....|++++-. ...+++|..-|+.+.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 444556666543 345777777777763
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.20 E-value=0.0036 Score=49.51 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLL 436 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 436 (645)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...+++++|.+.++...+ ..| +...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE---LDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcchhHHHHHHHHH
Confidence 4455556666666666666666665531 12234444555555555666666665555442 112 123334444444
Q ss_pred HHcCCHHHHHHHHH
Q 048812 437 GRAGHLEESANFIT 450 (645)
Q Consensus 437 ~~~g~~~~A~~~~~ 450 (645)
...|++++|...+.
T Consensus 79 ~~~~~~~~a~~~~~ 92 (100)
T cd00189 79 YKLGKYEEALEAYE 92 (100)
T ss_pred HHHHhHHHHHHHHH
Confidence 44444444444433
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.20 E-value=0.0042 Score=56.56 Aligned_cols=101 Identities=19% Similarity=0.341 Sum_probs=82.1
Q ss_pred HHHHHHHHhhc--CcCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--------
Q 048812 340 IELAYDLFSEI--SEKNVYLWTSVIAAYAMA-----GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG-------- 404 (645)
Q Consensus 340 ~~~A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-------- 404 (645)
+.--...|+.. ..+|-.+|..++..|.+. |+.+=....+..|.+.|+.-|..+|+.||..+=+..
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33445566665 568889999999998864 677777888899999999999999999999876532
Q ss_pred --------cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 048812 405 --------LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 405 --------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 441 (645)
+-+-|++++++|. .+|+-||.+++..|++.+++.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 4567889999999 78999999999999999887765
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.19 E-value=0.31 Score=53.43 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=85.7
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH--hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHH
Q 048812 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR--TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246 (645)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 246 (645)
...+++..|+....++.+. -||. .|..+++++ .+.|..++|..+++.....+ ..|..+...+...|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 4567888888888887765 3443 355556654 47788888887777766555 3378888888899999999999
Q ss_pred HHHHHcccCCCCCChhhHHHHHHHHHhcCCHH----HHHHHHHhcccCCchhHHHHH
Q 048812 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD----EARRLFDEMVERNLISWTLMI 299 (645)
Q Consensus 247 A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~~~~t~~~ll 299 (645)
|..+|++.....|+......+..+|++.+.+. .|+++++...+ +...+-+++
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~ 151 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVI 151 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHH
Confidence 99999885555677666666777777776654 45555554433 233333444
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.18 E-value=0.018 Score=56.85 Aligned_cols=133 Identities=9% Similarity=0.130 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA-CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
.+|-.++...-+.+..+.|..+|.+.++.+. .+...|...... +...++.+.|.++|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 4688899999999999999999999986432 233334333333 344677888999999999764 456778889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 435 LLGRAGHLEESANFITSM-PIPPDV----SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.-=.+.|+++....+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999986 323333 499999999999999999999999999988875
No 169
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.045 Score=50.97 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=118.6
Q ss_pred CCCCcHHHHHHHHhhcCcCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048812 335 ISIDNIELAYDLFSEISEKNVYLWTSV---IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 411 (645)
+..++.+.|...++.+.++-.-++..+ ..-+-..|++++|+++|+...+.. +.|.+++..=+...-..|..-+|++
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 444577888888877654222222211 123445899999999999999875 4567777766666666777778888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 048812 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCH---QNVKLAEHAFKHLTE 486 (645)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~ 486 (645)
-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -++| ++..+..+...+.-. .|.+.+.+.+.+.++
T Consensus 142 ~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 87777753 5678999999999999999999999999998 3445 556666776665444 378899999999999
Q ss_pred cCCCCchhHHHHHHHHHH
Q 048812 487 TDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 487 ~~p~~~~~y~~l~~~~~~ 504 (645)
+.|.+ ...+..+|..
T Consensus 220 l~~~~---~ral~GI~lc 234 (289)
T KOG3060|consen 220 LNPKN---LRALFGIYLC 234 (289)
T ss_pred hChHh---HHHHHHHHHH
Confidence 99955 3445555544
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0028 Score=60.29 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=71.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChH
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~ 475 (645)
-..+.+++++|+..|.+.++ +.|+ ..-|..=..+|.+.|.++.|.+=.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 36677889999998888884 6775 455555677888999888888766554 66664 458888888899999999
Q ss_pred HHHHHHHHHHhcCCCCch
Q 048812 476 LAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~ 493 (645)
+|++.|++.++++|++..
T Consensus 167 ~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHhhhccCCCcHH
Confidence 999999999999998853
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.15 E-value=0.0013 Score=48.53 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=49.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455678888999999888887 4446 566888899999999999999999999999999864
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.14 E-value=0.011 Score=63.44 Aligned_cols=143 Identities=14% Similarity=0.018 Sum_probs=104.2
Q ss_pred cCcCChhHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc--------CcHHHHHHHHHH
Q 048812 350 ISEKNVYLWTSVIAAYAMAG-----HAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHG--------GLVDEGYDFLSK 415 (645)
Q Consensus 350 ~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~--------g~~~~a~~~~~~ 415 (645)
....|...|...+.+..... ..++|..+|++..+ ..|| ...+..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 33467899999998866533 26799999999998 4677 44555544433221 123344444444
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 416 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.........+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 3321112334577888877777889999999999987 677898899999999999999999999999999999998753
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.14 E-value=0.0085 Score=61.34 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=83.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHc
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRA 439 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 439 (645)
-...+...|++++|+++|++.++.. +-+...|..+..++...|++++|...++.+.+ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999853 23467788888899999999999999999885 566 477888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 048812 440 GHLEESANFITSM-PIPPDVSIWSSLLRAC 468 (645)
Q Consensus 440 g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~ 468 (645)
|++++|...|++. .+.|+......++..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999886 5666655544444433
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.14 E-value=0.0015 Score=51.17 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHH
Q 048812 368 AGHAQKAIDLFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 445 (645)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4667777777777766432 12344444466677777777777777765 2 12222 23333445666666666666
Q ss_pred HHHHHh
Q 048812 446 ANFITS 451 (645)
Q Consensus 446 ~~~~~~ 451 (645)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666653
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0056 Score=58.31 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=81.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCC
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGH 441 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 441 (645)
.-+.+.+++++|+..|.+.++. .+-|.+-|..=..+|++.|.++.|++=.+.... +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 3466789999999999999985 233567777788899999999999988877763 6776 6899999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHH
Q 048812 442 LEESANFITSM-PIPPDVSIWSSLL 465 (645)
Q Consensus 442 ~~~A~~~~~~m-~~~pd~~~~~~ll 465 (645)
+++|.+.|++. .+.|+-.+|-.=|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999886 7888877765533
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.08 E-value=0.037 Score=49.95 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGC 431 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 431 (645)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|.+.++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 45677888888889999999999998876532322 34777888888889999999998888774 3443 444555
Q ss_pred HHHHHH
Q 048812 432 MVDLLG 437 (645)
Q Consensus 432 li~~~~ 437 (645)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
No 177
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.07 E-value=0.0091 Score=48.19 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMVSLISARTKLR--------DLEMGKNLHLFLEESTMKISGSLL 231 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 231 (645)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 899999999999887653 234566789999999999999999
Q ss_pred HHHHHHHHH
Q 048812 232 NYLVDMYFK 240 (645)
Q Consensus 232 ~~li~~y~~ 240 (645)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.05 E-value=0.0095 Score=58.87 Aligned_cols=128 Identities=11% Similarity=-0.028 Sum_probs=84.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKK---SRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-------PI-PPDVS 459 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~pd~~ 459 (645)
.|..|-+.|.-.|+++.|+..++.- .+++|-.. ....++.|...+.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666677788877665532 22344332 2456677777777788888887776643 21 12345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETD------PLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+.-+|.++|....+++.|+.++.+-+.+. .....++.+|.++|...|.-+.|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66678888888888888888887765522 1234577888888888888888887766554
No 179
>PRK15331 chaperone protein SicA; Provisional
Probab=97.02 E-value=0.0068 Score=52.94 Aligned_cols=90 Identities=8% Similarity=-0.002 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
....-+...|++++|..+|+-+ -. .-+..-|..|..+|...++++.|...|.....++++||.++...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444456789999999999876 12 235667888998999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 048812 509 DDMSRIRMKLRD 520 (645)
Q Consensus 509 ~~a~~~~~~m~~ 520 (645)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.97 E-value=0.0022 Score=48.59 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=47.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
..+.+.++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457778888888888888888888888888888888888888888888888876543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.93 E-value=0.0016 Score=48.64 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 439 AGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 439 ~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
.|++++|.++++++ ...| +...+..+..+|...|++++|..+++++...+|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444443 1112 34444445555555555555555555555555544
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.87 E-value=0.021 Score=46.16 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCCChH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPDQVTFIALLSACSHGG--------LVDEGYDFLSKKSRVYNIKPKMQ 427 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 427 (645)
|-...|.-+...|++.....+|+.+++.|+ .|+..+|+.+|.+..+.. .+-+...+++.|. ..+++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence 344566677777999999999999999999 999999999999877543 3445667788887 567888888
Q ss_pred HHHHHHHHHHH
Q 048812 428 HYGCMVDLLGR 438 (645)
Q Consensus 428 ~~~~li~~~~~ 438 (645)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.84 E-value=0.012 Score=60.53 Aligned_cols=121 Identities=16% Similarity=0.027 Sum_probs=75.2
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHH
Q 048812 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN-IKPKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPDVSI 460 (645)
Q Consensus 385 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~pd~~~ 460 (645)
+.+.+......+++.+....+++++..++.+.+.... ...-..+..++|..|...|..+++.++++.= |+=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445666666777777777777777777666653211 1111233347777777777777777777653 56677777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHc
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTET-DPLNDGAHVLLANIYAKA 505 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~-~p~~~~~y~~l~~~~~~~ 505 (645)
++.|+..+.+.|++..|.+++..|... ..+++.++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777666553 345555655544444444
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.82 E-value=0.035 Score=48.34 Aligned_cols=102 Identities=7% Similarity=-0.081 Sum_probs=72.3
Q ss_pred HHccCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 048812 149 LFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226 (645)
Q Consensus 149 ~f~~m~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 226 (645)
.+..|. +.+....-.+..-+.+.|++++|..+|+.+..- .|.. .-|-.|-.+|-..|++++|...|..+.... +.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~d 101 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-ID 101 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 333444 344444555666677888888888888887765 3443 345556666667788888888888888777 46
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
|+..+-.+..+|.+.|+.+.|++.|+.
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677777778888888888888888876
No 185
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.81 E-value=0.00093 Score=41.81 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 048812 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 481 ~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 513 (645)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.78 E-value=0.24 Score=43.97 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-----CCCCHH
Q 048812 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-P-----IPPDVS 459 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~pd~~ 459 (645)
.-|+...-..|..+....|+..+|...|++.. ..-+.-|....-.+.++....+++.+|...++++ . -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 45666666677777778888888888887776 2233445666667777777778888888777776 2 2344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+-..+.+.+...|....|+..|+.+++..|.. ..-.....++++.|+.+++..-+..+.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33456677888999999999999999988753 555566778889998888776554443
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.058 Score=53.73 Aligned_cols=154 Identities=10% Similarity=0.028 Sum_probs=103.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCCChHH------------
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS--ACSHGGLVDEGYDFLSKKSRVYNIKPKMQH------------ 428 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------ 428 (645)
..+...|++++|...--...+.. ++ ..+..++. ++...++.+.|...|++..+ +.|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 34556677777776655544431 11 11222222 33445677777777776652 4454211
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 429 -YGCMVDLLGRAGHLEESANFITSM-PI-----PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 429 -~~~li~~~~~~g~~~~A~~~~~~m-~~-----~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
+..=.+...+.|++.+|.+.+.+. .+ +|+...|.....+..+.|+.++|+.--+++++++|.-...|..-.++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 111123456889999999998876 44 44566677777778889999999999999999999888888888999
Q ss_pred HHHcCCchHHHHHHHHHHhCC
Q 048812 502 YAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 502 ~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+...++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999888775543
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.74 E-value=0.029 Score=55.33 Aligned_cols=139 Identities=10% Similarity=0.056 Sum_probs=103.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 237 (645)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 478899999999999999999999998653 2233444433333 33357788899999999987 57788899999999
Q ss_pred HHHcCCHHHHHHHHcccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcc--cCCchhHHHHH
Q 048812 238 YFKCGKIGEAQKLLGRYEIDEVD----VVLWTTLVSGYVKSNERDEARRLFDEMV--ERNLISWTLMI 299 (645)
Q Consensus 238 y~~~g~~~~A~~~~~~m~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~t~~~ll 299 (645)
+.+.|+.+.|+.+|++....-+. ...|...+.-=.+.|+.+.+.++.+++. -++..+...++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999999985444333 3489999999999999999999998887 33433444444
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.73 E-value=0.044 Score=48.43 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=95.5
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+++..++..+.|++.+--.|...+.+.|+..||...|++. .+.-|......+.++....++.-.|...++.+.+-.|
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3445556668899999999999999999999999999987 4566888999999999999999999999999999877
Q ss_pred C--CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 490 L--NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 490 ~--~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
. .+.....+...|...|++++|+..++...+.-
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 4 56677889999999999999999999886643
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.015 Score=55.77 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=86.9
Q ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCCchhHH
Q 048812 423 KP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCH---QNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 423 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
.| |...|-.|...|.+.|+++.|..-|.+. .+. +++..+..+..++... ....++..++++++.++|.+..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 6899999999999999999999999886 333 4566777777775443 3568899999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
.|...+...|++.+|...++.|.+..-.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999886643
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.71 E-value=0.028 Score=47.03 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=67.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLG 437 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 437 (645)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..++++....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677889999999999999999887655 45677788899999999999999999886543211 1122222344677
Q ss_pred HcCCHHHHHHHHHh
Q 048812 438 RAGHLEESANFITS 451 (645)
Q Consensus 438 ~~g~~~~A~~~~~~ 451 (645)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999888877654
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.71 E-value=0.092 Score=51.96 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG-GLVDEGYDFLSKKSRVYNIKPK----MQHYGCM 432 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 432 (645)
|...+..|...|++..|-..+.++ ...|... |++++|.++|++..+-+.-... ..++..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 444455556666666555554443 3456666 7888888888877754332222 4556777
Q ss_pred HHHHHHcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 433 VDLLGRAGHLEESANFITSMP---I-----PPDVS-IWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m~---~-----~pd~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
...+.+.|++++|.++|++.. . +.+.. .+-..+-.+...||...|.+.+++..+.+|.-
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 888999999999999998762 1 11121 12222224556789999999999999888753
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.71 E-value=0.76 Score=45.75 Aligned_cols=297 Identities=17% Similarity=0.142 Sum_probs=175.7
Q ss_pred chHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCCchhH--HH
Q 048812 159 ISWNTMISCYTS--MGMYREGLGLLSKMGAEGVSPDEVTMVSLISART--KLRDLEMGKNLHLFLEESTMKISGSL--LN 232 (645)
Q Consensus 159 ~~~n~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~ 232 (645)
.-|.+|-.|+.- .|+-..|.++-.+-.+. +.-|...+.-|+.+-. -.|+.+.|++-|+.|... |.... ..
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 345566555544 45666666666554322 3345555555665443 458888888888888742 22211 11
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhh
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~ 311 (645)
.|.----+.|..+.|...-+..-...| =.-.|.+.+...+..|+++.|+++++.-+...++
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi------------------ 220 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI------------------ 220 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh------------------
Confidence 222223466788877777665212223 2346778888999999999999998765422111
Q ss_pred hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChh--HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC
Q 048812 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVY--LWTSVIAAYAM---AGHAQKAIDLFLEMEETGT 386 (645)
Q Consensus 312 ~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~ 386 (645)
++++. .-..|+.+-+. .-+...|...-.+..+ +
T Consensus 221 ----------------------------------------e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L 258 (531)
T COG3898 221 ----------------------------------------EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--L 258 (531)
T ss_pred ----------------------------------------chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--c
Confidence 01110 01111111111 1233344443333332 5
Q ss_pred CCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH--HHHH--HHHhCCCCC-CHHH
Q 048812 387 KPDQV-TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE--ESAN--FITSMPIPP-DVSI 460 (645)
Q Consensus 387 ~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~--~~~~m~~~p-d~~~ 460 (645)
.||-+ .-..-..++.+.|++.+|-.+++.+-+ ..|.+..+...+ +.|.|+-. .... -++. ++| +..+
T Consensus 259 ~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~s--lk~nnaes 331 (531)
T COG3898 259 APDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLES--LKPNNAES 331 (531)
T ss_pred CCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHh--cCccchHH
Confidence 67743 333444678888999999999988874 466665543333 34555422 1111 1233 345 4567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHhCCCcccCce
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA-GRLDDMSRIRMKLRDMGLKKQLGY 529 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~ 529 (645)
.-++..+-...|++..|..-.+.+....|.. ..|..|.++-... |+-.++...+-+..+. +.+|.+
T Consensus 332 ~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 332 SLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 7778888889999999999999999999965 7888999987654 9988888887666442 344543
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.61 E-value=0.18 Score=48.41 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HH---HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-VT---FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+-.....+...|++++|++.|++.... -|+. .+ ...+..++.+.+++++|...+++..+.++-.|++. |...+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHH
Confidence 334455566788888888888888774 3332 22 24556677888888888888888887666666542 11112
Q ss_pred HHHH--Hc---------------CC---HHHHHHHHHhC----CCC---CCHHHH-----H-------HHHHHHHhcCCh
Q 048812 434 DLLG--RA---------------GH---LEESANFITSM----PIP---PDVSIW-----S-------SLLRACRCHQNV 474 (645)
Q Consensus 434 ~~~~--~~---------------g~---~~~A~~~~~~m----~~~---pd~~~~-----~-------~ll~a~~~~g~~ 474 (645)
.+++ .. .+ ..+|.+.|+++ |-. |+.... + .+..-|.+.|.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 2211 01 11 23444444443 211 111111 1 223337788999
Q ss_pred HHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 475 KLAEHAFKHLTETDPLND---GAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
..|..-++.+++.-|+.+ .+...+.++|...|..++|..+...+.
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 999999999999887654 456688899999999999999887653
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.58 E-value=0.06 Score=55.48 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET--GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 430 (645)
-+.+....++.......+.+++..++.+.+.. ....-..|..+++..|...|..+.+..+++.=. .||+-||..+++
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~D~~s~n 142 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFPDNFSFN 142 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCCChhhHH
Confidence 34555666777777777888899988888765 222234567799999999999999999998877 799999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 048812 431 CMVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCH 471 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~ 471 (645)
.|++.+.+.|++..|.++...| ..-.+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999887 2234455665555566554
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.52 E-value=0.02 Score=52.25 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHHccC--CCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcC----------
Q 048812 144 KEVCQLFDKL--PNRDVISWNTMISCYTSM-----GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL---------- 206 (645)
Q Consensus 144 ~~A~~~f~~m--~~~~~~~~n~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---------- 206 (645)
..-...|++. ..+|-.+|..+|..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 31 ~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 31 APHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 3345566665 458888999999988764 67777778889999999999999999999886542
Q ss_pred ------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCC
Q 048812 207 ------RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243 (645)
Q Consensus 207 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 243 (645)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788899999999999999999999998877665
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.50 E-value=0.0074 Score=45.09 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQ-NVKLAEHAFKHLTETDP 489 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p 489 (645)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666667777777777777777665 3344 4567888888888888 68889999988888877
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.26 Score=46.18 Aligned_cols=224 Identities=13% Similarity=0.094 Sum_probs=127.6
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHHHhhcC----------chh-hccCC-hHHHHHH-HccCCCCCcchHHHHHHHHHhcC
Q 048812 106 IWNSIIENQLINGYPQEVFAIYLYLVTRT----------VLL-NKCGK-LKEVCQL-FDKLPNRDVISWNTMISCYTSMG 172 (645)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~~-~~~g~-~~~A~~~-f~~m~~~~~~~~n~li~~~~~~g 172 (645)
.|+.-+..+++....++|..-+......+ ..| .+.|. +.-+.++ ..++++.....|++|++.+.-..
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~ 150 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT 150 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 35555555555555555554444443332 111 12232 2233332 23344444556777777665544
Q ss_pred ChHHHHHHHHHHhhCCCCCC----------hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC
Q 048812 173 MYREGLGLLSKMGAEGVSPD----------EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242 (645)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 242 (645)
-.++-+..++. +..|. ......++..+...+.+.-....+..+++...+.++.....|+++-.+.|
T Consensus 151 ~V~~ii~~~e~----~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 151 VVSKILANLEQ----GLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHHHHHh----ccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc
Confidence 33333333322 11111 22345566667777888888888888888877888889999999999999
Q ss_pred CHHHHHHHHcccCCC--CCChhhHHHHH-----HHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 243 KIGEAQKLLGRYEID--EVDVVLWTTLV-----SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 243 ~~~~A~~~~~~m~~~--~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
+.+.|...|++.+.. .-|..+.+.++ ..|.-.+++.+|...|.+....|
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D------------------------ 282 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD------------------------ 282 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC------------------------
Confidence 999999999863221 11333333322 23444455555655555555433
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 395 (645)
..|++.-|.-.-+..-.|+..+|++..+.|.+. .|...+-.+
T Consensus 283 ------------------------------------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 283 ------------------------------------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred ------------------------------------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 234555554444455578899999999999874 455444443
No 199
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.45 E-value=0.0055 Score=41.05 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999888877654
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.44 E-value=0.023 Score=55.05 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHH
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND---GAHVLLA 499 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~y~~l~ 499 (645)
.|..-+..+.+.|++++|...|+.+ ...|+ ...+--+..++...|+++.|...|+.+++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444455566555555554 12222 12344455556666666666666666666555432 3344445
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 048812 500 NIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~m~~ 520 (645)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666666544
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.41 E-value=0.014 Score=59.59 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDV----SIWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555555555555555555552 444442 23555555555555555555555555554
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.39 E-value=0.044 Score=45.88 Aligned_cols=83 Identities=17% Similarity=0.081 Sum_probs=47.6
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHcC
Q 048812 435 LLGRAGHLEESANFITSM---PIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL---NDGAHVLLANIYAKAG 506 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m---~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~y~~l~~~~~~~g 506 (645)
++-..|+.++|..++++. +...+ ...+-.+.+++...|++++|..++++.....|+ +......+.-++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 344455555555555543 21111 224445566677777777777777777766665 4445555556666777
Q ss_pred CchHHHHHHHH
Q 048812 507 RLDDMSRIRMK 517 (645)
Q Consensus 507 ~~~~a~~~~~~ 517 (645)
+.++|.+.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 77777666543
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.22 E-value=2.2 Score=45.68 Aligned_cols=181 Identities=15% Similarity=0.192 Sum_probs=100.3
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-------------------chhhccCChHHHHHH
Q 048812 89 LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-------------------VLLNKCGKLKEVCQL 149 (645)
Q Consensus 89 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------------~~~~~~g~~~~A~~~ 149 (645)
+++|.+..+. .|....|..+.....+.-.++-|...|-+...-. ..-+-.|++++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4444444443 4556679888887777666666666664432200 222234677777777
Q ss_pred HccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 048812 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD----EVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225 (645)
Q Consensus 150 f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 225 (645)
+-.|..+|.. |..+.+-|++-...++++. -|-..| ...|..+...++....++.|.+.+..--.
T Consensus 757 yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---- 824 (1189)
T KOG2041|consen 757 YLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---- 824 (1189)
T ss_pred hhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 7766666642 4455566666555555432 111111 23455555555555556666555543211
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 048812 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291 (645)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 291 (645)
...++.+|.+..++++-+.+-.. .+ .|....-.|...+...|.-++|.+.|-+-..|.
T Consensus 825 -----~e~~~ecly~le~f~~LE~la~~--Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk 882 (1189)
T KOG2041|consen 825 -----TENQIECLYRLELFGELEVLART--LP-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK 882 (1189)
T ss_pred -----hHhHHHHHHHHHhhhhHHHHHHh--cC-cccchHHHHHHHHHhhchHHHHHHHHHhccCcH
Confidence 11245555555555555555444 22 244455667888888888888888876655443
No 204
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.21 E-value=0.15 Score=42.43 Aligned_cols=139 Identities=13% Similarity=0.204 Sum_probs=87.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 446 (645)
-.|..++..++..+.... .+..-++.+|--...+-+-+-..+.++.+-+-+.+.| +|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHHHH
Confidence 357777888888777764 3566677777666666666666677776665444433 33333333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 447 ~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
..+-.++ .+......-+++...+|.-+.-.+++..+...+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333332 233445566778888999999999999988766567788889999999999999999999999998874
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.16 E-value=0.31 Score=51.32 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHH-------
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP-IPPDVSI------- 460 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~------- 460 (645)
+..+...+..-+-+...+..|-++|.+|-. ...++++....+++++|..+-++.| +.||+..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 345555555556666777788888887763 2467888889999999999999885 4455431
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 461 ----WSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 461 ----~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
+.---.||.+.|+..+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 12233567888888889888888865
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.10 E-value=0.025 Score=42.74 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=51.0
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
..|.+.+++++|.++++.+ ...| ++..|......+...|+++.|.+.++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677888888888888887 4444 5667888888899999999999999999999998765443
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.02 E-value=1.9 Score=43.14 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=35.6
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHH
Q 048812 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300 (645)
Q Consensus 235 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~ 300 (645)
|.-+...|+...|.++-.+. .-||-.-|-..|.+++..++|++-.++-.. +..++.|..++.
T Consensus 184 i~~li~~~~~k~A~kl~k~F--kv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~ 245 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEF--KVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVE 245 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHH
Confidence 44455566667777776663 335666677777777777777665554332 233444444443
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.00 E-value=0.99 Score=45.71 Aligned_cols=127 Identities=22% Similarity=0.162 Sum_probs=81.4
Q ss_pred HHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---------cCcHHHHHHHHHHhHHhcCCCCChHHH
Q 048812 362 IAAYAM---AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH---------GGLVDEGYDFLSKKSRVYNIKPKMQHY 429 (645)
Q Consensus 362 i~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (645)
.-++-+ .|+.++|++++..+......++..||..+...|-. ....++|...|.+.- .+.|+..+-
T Consensus 186 afALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~G 262 (374)
T PF13281_consen 186 AFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSG 262 (374)
T ss_pred HHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccch
Confidence 334445 78888888888886666667777777766665532 234677777776544 456664443
Q ss_pred HHHHHHHHHcCCHH----HHHHHH---HhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 430 GCMVDLLGRAGHLE----ESANFI---TSM-------PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 430 ~~li~~~~~~g~~~----~A~~~~---~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
-.++.++...|.-. +..++- ..+ .-..|-..+.+++.++.-.||.+.|.++++++..+.|+.
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33344444444322 222222 111 123456677899999999999999999999999998765
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.98 E-value=0.088 Score=44.54 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
..++.++|.++++.|+.+....+.+..- |+.++... ..+. ......+.|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence 4456677777777777776666665432 22211000 0000 1112344555666666666
Q ss_pred HHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 048812 435 LLGRAGHLEESANFITSM----PIPPDVSIWSSLLRACRCH 471 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m----~~~pd~~~~~~ll~a~~~~ 471 (645)
+|+..|++..|.++++.. +++-+..+|..|+.-+...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 666666666666555443 4444556666666654443
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.099 Score=52.28 Aligned_cols=85 Identities=15% Similarity=0.074 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCE
Q 048812 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537 (645)
Q Consensus 458 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~ 537 (645)
..++..|.-+|.+.+.+..|++.-.++++++|+|..+.+.-..+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 456777888889999999999999999999999999999999999999999999999999976
Q ss_pred EEEEEeCCCCCcChHHHHHHHHHHHHHHHHc
Q 048812 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568 (645)
Q Consensus 538 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~ 568 (645)
..|..++|...|..+..++++.
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888764
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.96 E-value=0.18 Score=53.08 Aligned_cols=191 Identities=12% Similarity=0.184 Sum_probs=99.2
Q ss_pred HHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCC--cccHHH-----HHHHHHHcCChhHHHHHHHHHhhcC--
Q 048812 64 LITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE--IKIWNS-----IIENQLINGYPQEVFAIYLYLVTRT-- 134 (645)
Q Consensus 64 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~--~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~-- 134 (645)
+.+.|-.|+..+ +...++-.|++.+|.++|.+--..| ...|+- ...-|...|..++-..+.++-.++.
T Consensus 626 ~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 626 RKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred HHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 444554454432 2344556666777777776543222 222322 1233444555555444444322211
Q ss_pred --------chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcC
Q 048812 135 --------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206 (645)
Q Consensus 135 --------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (645)
.|+...|+.++|..+ ...+|-.+-++++=+++-.. +..+...+...+.+.
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l 760 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKL 760 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhc
Confidence 344445555555433 34445555555555544322 344555555555556
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChh-----------hHHHHHHHHHhcC
Q 048812 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV-----------LWTTLVSGYVKSN 275 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~-----------~~~~li~~~~~~g 275 (645)
..+..|-++|..|-.. .+++++....+++++|..+-++...-.+|+. -+.---.+|.+.|
T Consensus 761 ~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 761 DSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 6666677776655322 2466677777777777777776222223332 1222334667788
Q ss_pred CHHHHHHHHHhcc
Q 048812 276 ERDEARRLFDEMV 288 (645)
Q Consensus 276 ~~~~A~~~~~~m~ 288 (645)
+..||.++++++.
T Consensus 832 r~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 832 RQREAVQVLEQLT 844 (1081)
T ss_pred chHHHHHHHHHhh
Confidence 8888888888775
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.94 E-value=0.19 Score=48.78 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=55.6
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCh
Q 048812 401 SHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM----PIPP-DVSIWSSLLRACRCHQNV 474 (645)
Q Consensus 401 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~ 474 (645)
...|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ |..| ....+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3445566666666665543321110 234455566666666666666666655 2111 233444556667788899
Q ss_pred HHHHHHHHHHHhcCCCCch
Q 048812 475 KLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~~ 493 (645)
+.|...++++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 9999999999998887643
No 213
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.92 E-value=0.075 Score=44.97 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~ 468 (645)
|..++.+++.++++.|+++....+.+. .+|+.++...- .+. +-..-+..|+..+..+++.++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~---~WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKS---VWGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHH---hcCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 567788888888888888888777753 45676553110 000 222236789999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHc
Q 048812 469 RCHQNVKLAEHAFKHLTETDP--LNDGAHVLLANIYAKA 505 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p--~~~~~y~~l~~~~~~~ 505 (645)
...|++..|.++.+...+..| -+...+..|.+-....
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998553 3456777666654443
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.90 E-value=0.035 Score=48.75 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+...++..+...|+++.|....++++..+|.+...|..++.+|...|+..+|.++++++++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777788899999999999999999999999999999999999999999999988743
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.87 E-value=0.077 Score=50.08 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcC--cCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--------
Q 048812 340 IELAYDLFSEIS--EKNVYLWTSVIAAYAMA-----GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG-------- 404 (645)
Q Consensus 340 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-------- 404 (645)
+-..++.|.... ++|-.+|-+++..+..+ ++.+=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334456677776 58889999999888764 556666677899999999999999999999876543
Q ss_pred --------cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 048812 405 --------LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 405 --------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 443 (645)
+-+-++.++++|. .+|+.||-++-..|++++++.|..-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2345889999999 7999999999999999999988643
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.45 Score=44.67 Aligned_cols=137 Identities=11% Similarity=0.057 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----CCCChHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN----IKPKMQHYGC 431 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~ 431 (645)
..-++++..+.-+|.+.-.+.++.+.++...+-+..-...+.+.-.+.|+.+.|..+|+...+..+ +.-..-+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777777888888889999998876566777777888888889999999999997664433 2222333333
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 432 MVDLLGRAGHLEESANFITSMPI-PP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~~-~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+...|.-++++.+|...+.+.+. .| |+..-|.-.-...-.|+...|.+..+.+++..|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 44456667788888888877742 22 344444333334446888889999998888888653
No 217
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.85 E-value=1.8 Score=41.55 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=35.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEET--GTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 416 (645)
+..-|.+.|.+..|+.-|+.+.+. +.+........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 445577777777777777777753 22223445556667777777777776665443
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.82 E-value=0.17 Score=53.10 Aligned_cols=130 Identities=19% Similarity=0.142 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048812 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186 (645)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 186 (645)
.+.+++-+-+.|.++.|+++-..-...=.+..++|+++.|.++-++.. +...|..|.....++|+++-|.+.|.+...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 455555555556666665554443222245568999999999988876 666999999999999999999999988753
Q ss_pred CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
|..|+-.+...|+.+.-.++.......| . +|....++.-.|++++..+++.+
T Consensus 376 ---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 ---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666666777888888878777777665 2 45555666677888888888876
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.11 Score=49.90 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=80.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHH---HHhcCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS---ARTKLRDLEMGKNLHLFLEESTMKISGSLLNY 233 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 233 (645)
|...|--|...|.+.|+++.|+.-|.+..+.- .+|...+..+.. .-+...+-.++.+++.++++.. +.|+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 77889999999999999999999998887652 223333333333 3334445677888888888775 556666667
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHH
Q 048812 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270 (645)
Q Consensus 234 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~ 270 (645)
|...+...|++.+|...|+.|....|....|..+|..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 7778888888888888888876666666666666654
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.74 E-value=0.97 Score=42.15 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTK-P-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 437 (645)
.....+...|++++|+..|+++...-.. | -......+..++.+.|+++.|...++...+.++-.|... +...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHH
Confidence 4455667789999999999998865221 1 134556677788888999999999988887766555431 222222221
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-----------------hHHHHHH
Q 048812 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG-----------------AHVLLAN 500 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~y~~l~~ 500 (645)
......... . .....+....|...|+.+++..|+++- .-..++.
T Consensus 89 ~~~~~~~~~------~-------------~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGIL------R-------------SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccch------h-------------cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110 1 112223455666677777777776542 2235677
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 048812 501 IYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 501 ~~~~~g~~~~a~~~~~~m~~ 520 (645)
.|.+.|++..|..-++.+.+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH
Confidence 89999999999999988866
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=4.8 Score=43.77 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=86.5
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 048812 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464 (645)
Q Consensus 385 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~l 464 (645)
|..-...|.+--+.-+...|+..+|.++-.+.+ .||-..|--=+.+++..+++++-+++-+++. .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334444556666667777888888887765544 5788888888888999999999888888774 24566778
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
..+|.+.|+.++|.+++-+.-.+ .-...+|.+.|.+.+|.++--+-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 88899999999998887654222 15678888999988888775443
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.44 E-value=0.026 Score=43.29 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
+..++.+|...|++++|.+.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444443
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.38 E-value=0.028 Score=43.12 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-------P-IPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
..+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|++.+++.+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467899999999999999999998875 2 1233 557888999999999999999999998874
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.35 E-value=1.2 Score=44.63 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=120.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHH----hCC-CCchhHHHHHHH
Q 048812 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEV----TMVSLISARTKLRDLEMGKNLHLFLEE----STM-KISGSLLNYLVD 236 (645)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~ 236 (645)
.-+++.|+....+.+|+..++.|-. |.. .|..|-++|.-.+|+++|.+.|..=+- .|- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478899999999999999988743 433 466677788888899999988754221 110 011122223444
Q ss_pred HHHHcCCHHHHHHHHcc-cCCC----C--CChhhHHHHHHHHHhcCCH-------------HHHHHHHHhcccCCchhHH
Q 048812 237 MYFKCGKIGEAQKLLGR-YEID----E--VDVVLWTTLVSGYVKSNER-------------DEARRLFDEMVERNLISWT 296 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~-m~~~----~--~~~~~~~~li~~~~~~g~~-------------~~A~~~~~~m~~~~~~t~~ 296 (645)
.+--.|.+++|.-.-.+ +... . .....+-.+...|...|+. +++.+.|+...+ -|.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~----fy~ 179 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK----FYM 179 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH----HHH
Confidence 44445666665543222 1000 0 1223444556666555431 222222222210 000
Q ss_pred HHHHhhhccCCchhh-hhhcc-------ccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 297 LMISGMLNQDAEFKY-KSCAS-------IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 297 ~ll~~~~~~~~~~~~-~a~~~-------~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
.-+...-+.||..+- .+|.+ +|+++.+...|.. +++-|.+.=++..+ -..+..+..++.-.
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~---------RL~ia~efGDrAae--RRA~sNlgN~hifl 248 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKL---------RLEIAQEFGDRAAE--RRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHH---------HHHHHHHhhhHHHH--HHhhcccchhhhhh
Confidence 000001111122222 34444 3455555555443 22333333222221 23566777888888
Q ss_pred CCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048812 369 GHAQKAIDLFLEMEE----TGTK-PDQVTFIALLSACSHGGLVDEGYDFLSK 415 (645)
Q Consensus 369 g~~~~A~~l~~~m~~----~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 415 (645)
|+++.|.+.|+.-.. .|-+ ....+..+|.++|.-...+++|+.++..
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999888877542 2322 2244555667777777777777777754
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.21 E-value=0.1 Score=45.73 Aligned_cols=114 Identities=15% Similarity=0.061 Sum_probs=67.7
Q ss_pred HHcCChhHHHHHHHHHhhc--Cchhhcc---CChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048812 115 LINGYPQEVFAIYLYLVTR--TVLLNKC---GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189 (645)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~--~~~~~~~---g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (645)
...++...+++.++++... +..+... .-+...+..+.+. -......++..+...|++++|+.+.+.+....
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d- 92 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLREL---YLDALERLAEALLEAGDYEEALRLLQRALALD- 92 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 4556777777777766652 1222211 1122222222221 22456667777888899999999999888763
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHH-----hCCCCchhHHH
Q 048812 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEE-----STMKISGSLLN 232 (645)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~ 232 (645)
+-|...|..+|.++...|+...|.+.|..+.+ .|++|+..+-.
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34677888999999999999999988887743 47777766543
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=2.1 Score=39.94 Aligned_cols=143 Identities=13% Similarity=0.201 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEE--TGTKPDQV--TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
..|+--..+|..+|.++.|-..+++.-+ +++.||.. .|.--+...-..++...| ...|..
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk 155 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGK 155 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHH
Confidence 3466677888888888887777766432 23666632 222222222222222222 344555
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCchhHHHHH
Q 048812 432 MVDLLGRAGHLEESANFITSMP-------IPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTE----TDPLNDGAHVLLA 499 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~-------~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p~~~~~y~~l~ 499 (645)
.-..|.+..++++|-..|.+-. ..|+. ..+-+.|-.+....|+..|++.++.-.+ .+|++..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 5667888888888877766542 12332 2344455556666789999999998766 3466777777888
Q ss_pred HHHHHcCCchHHHHHH
Q 048812 500 NIYAKAGRLDDMSRIR 515 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~ 515 (645)
.+| ..|+.+++.++.
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 877 457777776655
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.87 E-value=2.7 Score=39.18 Aligned_cols=137 Identities=15% Similarity=0.084 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc-------------cCcHHHHHHHHHHhHHhcCCC
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSH-------------GGLVDEGYDFLSKKSRVYNIK 423 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~-------------~g~~~~a~~~~~~~~~~~~~~ 423 (645)
.-.++.++-+.|++++|...|++.++.- -.|. ..+...+.+.+. .+...+|...|+.+.+.
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~---- 119 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR---- 119 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----
Confidence 3456778888999999999999987642 1222 222222222221 12233445555554443
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch---hHHHHHH
Q 048812 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG---AHVLLAN 500 (645)
Q Consensus 424 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~---~y~~l~~ 500 (645)
|=......+|...+..+...--..- -.+..-|.+.|.+..|..-++.+++..|+.+. +...|+.
T Consensus 120 ------------yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 120 ------------YPNSEYAEEAKKRLAELRNRLAEHE-LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE 186 (203)
T ss_dssp -------------TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred ------------CcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 3334444455444443310000000 12445588899999999999999999987654 4457888
Q ss_pred HHHHcCCchHHH
Q 048812 501 IYAKAGRLDDMS 512 (645)
Q Consensus 501 ~~~~~g~~~~a~ 512 (645)
.|.+.|..+.+.
T Consensus 187 ~y~~l~~~~~a~ 198 (203)
T PF13525_consen 187 AYYKLGLKQAAD 198 (203)
T ss_dssp HHHHTT-HHHHH
T ss_pred HHHHhCChHHHH
Confidence 899999877443
No 228
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=5.7 Score=40.19 Aligned_cols=255 Identities=11% Similarity=0.004 Sum_probs=133.8
Q ss_pred hcCChHHHHHHHhhC---CCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhhccCChHHHHHHH
Q 048812 85 FTGDLGYAQQIIRQG---DEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLNKCGKLKEVCQLF 150 (645)
Q Consensus 85 ~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~g~~~~A~~~f 150 (645)
+..++..|+..+... -+.++.-|..-...+..-|++++|+--.++-.+.+ ..+...++..+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 334445555554432 23345556666667777777777666665555433 1122223333444443
Q ss_pred ccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhhHHHHHH-HHhcCCChHHHHHHHHHHHHhCCCCch
Q 048812 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMVSLIS-ARTKLRDLEMGKNLHLFLEESTMKISG 228 (645)
Q Consensus 151 ~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~ 228 (645)
+ |...| ....|+..++....... +|...++-.+-. ++...++.+.|.++-..+++.. ..+
T Consensus 141 ~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n- 202 (486)
T KOG0550|consen 141 K-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN- 202 (486)
T ss_pred h-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch-
Confidence 3 11111 12233333433333322 244445544332 3456788888888777777654 222
Q ss_pred hHHHHHH--HHHHHcCCHHHHHHHHcccCCCCCChh-------------hHHHHHHHHHhcCCHHHHHHHHHhcccCCch
Q 048812 229 SLLNYLV--DMYFKCGKIGEAQKLLGRYEIDEVDVV-------------LWTTLVSGYVKSNERDEARRLFDEMVERNLI 293 (645)
Q Consensus 229 ~~~~~li--~~y~~~g~~~~A~~~~~~m~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 293 (645)
.+..++ .++--.++.+.|..-|++-....|+-. .|..=..-..++|++.+|.+.|.+....|+.
T Consensus 203 -~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 203 -AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred -hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 222222 233345678888888887443444321 2333333456677777777777776633321
Q ss_pred hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHH
Q 048812 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373 (645)
Q Consensus 294 t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 373 (645)
. ..++...|-.......+.|+.++
T Consensus 282 n--------------------------------------------------------~~~naklY~nra~v~~rLgrl~e 305 (486)
T KOG0550|consen 282 N--------------------------------------------------------KKTNAKLYGNRALVNIRLGRLRE 305 (486)
T ss_pred c--------------------------------------------------------cchhHHHHHHhHhhhcccCCchh
Confidence 1 03455556666667777888888
Q ss_pred HHHHHHHHHHcCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 374 AIDLFLEMEETGTKPDQVT---FIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 374 A~~l~~~m~~~g~~pd~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
|+.--++... .|..- |..-..++...+.+++|.+.|++..+
T Consensus 306 aisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 306 AISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877666554 23322 22222344556778888888777764
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.41 E-value=0.27 Score=50.43 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM----QHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
+...++.+..+|...|++++|...|++..+ +.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467788888888889999999999888774 57763 34788888899999999998888875
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.34 E-value=0.49 Score=39.41 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=65.9
Q ss_pred HHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCC---chhHHHHHHHHHHcCCc
Q 048812 435 LLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLN---DGAHVLLANIYAKAGRL 508 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~~---~~~y~~l~~~~~~~g~~ 508 (645)
+++..|+++.|++.|.+. .+ +.....||.=..+++-+|+.++|+.-+++++++. |.. -..|+.-..+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888887765 22 2356778888888888888888888888888854 332 13577777788888888
Q ss_pred hHHHHHHHHHHhCC
Q 048812 509 DDMSRIRMKLRDMG 522 (645)
Q Consensus 509 ~~a~~~~~~m~~~~ 522 (645)
+.|..=|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888877766
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.23 E-value=0.37 Score=45.90 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=41.3
Q ss_pred HcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHcCC
Q 048812 438 RAGHLEESANFITSM-------PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL---NDGAHVLLANIYAKAGR 507 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~y~~l~~~~~~~g~ 507 (645)
+.|++.+|...|... ...|+..-| |..++...|+++.|..+|..+.+-.|+ -|..+.-|..+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555444443 123444444 445555555666666665555554333 23445555555555666
Q ss_pred chHHHHHHHHHHh
Q 048812 508 LDDMSRIRMKLRD 520 (645)
Q Consensus 508 ~~~a~~~~~~m~~ 520 (645)
.++|..++++..+
T Consensus 231 ~d~A~atl~qv~k 243 (262)
T COG1729 231 TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555544
No 232
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.03 E-value=0.37 Score=45.65 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=80.7
Q ss_pred hHHHHHHHccCC--CCCcchHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCC--------
Q 048812 143 LKEVCQLFDKLP--NRDVISWNTMISCYTSM-----GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR-------- 207 (645)
Q Consensus 143 ~~~A~~~f~~m~--~~~~~~~n~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-------- 207 (645)
+-..++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334556677777 68889999999888754 566667778899999999999999999998876533
Q ss_pred --------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 208 --------DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 208 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
+-+-+..++++|...|+-||..+-..|++++.+-|..
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345678889999999999999999999998887763
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=93.85 E-value=1.2 Score=45.99 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
|+.....+..+....++.+.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333444344444455555555555555555544555544444555555555544444
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.63 E-value=0.13 Score=31.85 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888899999999999999999998886
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=1.3 Score=44.52 Aligned_cols=138 Identities=12% Similarity=0.033 Sum_probs=93.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 441 (645)
...|.+.|++..|...|++.... |. +...-+.++..... ..-..++..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677778888888887776542 00 11111112222111 1223456667777888888
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHH-HHHHHHH
Q 048812 442 LEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM-SRIRMKL 518 (645)
Q Consensus 442 ~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a-~~~~~~m 518 (645)
+.+|++.-.+. ... +|+...--=..||...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+.++. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877665 333 45555555677889999999999999999999999988888888887777766554 7788888
Q ss_pred HhC
Q 048812 519 RDM 521 (645)
Q Consensus 519 ~~~ 521 (645)
-..
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 543
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.42 E-value=4.7 Score=34.82 Aligned_cols=130 Identities=11% Similarity=0.009 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+...-..++..+...+.......+++.+...+ ..+...++.++..|++.. .++..+++.. .++......++
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHH
Confidence 33445567888888889999999999988876 356777888888887653 3444555542 12223334577
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH-QNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
..+.+.+.++++.-++.+++... -.+..+..+ ++++.|.+.+++ +.++..|..++..+.
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77888888888888888876422 222233333 788888888775 335567776666554
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=93.42 E-value=6.3 Score=40.88 Aligned_cols=157 Identities=12% Similarity=0.128 Sum_probs=105.6
Q ss_pred hHH--HHHHHHHHHcC-----CHHHHHHHHHHHH-HcCCCCCHH-HHHHHHHHHh--------c-cCcHHHHHHHHHHhH
Q 048812 356 YLW--TSVIAAYAMAG-----HAQKAIDLFLEME-ETGTKPDQV-TFIALLSACS--------H-GGLVDEGYDFLSKKS 417 (645)
Q Consensus 356 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~-~~g~~pd~~-t~~~ll~a~~--------~-~g~~~~a~~~~~~~~ 417 (645)
..| ..++.|....- ..+.|+.+|.+.. ...+.|+-. .|..+..++. . .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66776665522 2467888999988 233677743 3333322221 1 234556666666666
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 418 RVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 418 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
+ +.| |......+..++.-.|+++.|..+|++. ...||. .+|....-.+.-.|+.++|.+.+++.+++.|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 455 5677777777788888999999999987 566653 466666666778899999999999999999976554
Q ss_pred HH--HHHHHHHHcCCchHHHHHHH
Q 048812 495 HV--LLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 495 y~--~l~~~~~~~g~~~~a~~~~~ 516 (645)
-+ ..+++|...+ .++|.+++-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 44 3444666544 677777763
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.42 E-value=0.21 Score=30.83 Aligned_cols=33 Identities=30% Similarity=0.268 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888999999999888888864
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.28 E-value=1.5 Score=46.05 Aligned_cols=133 Identities=14% Similarity=0.237 Sum_probs=89.8
Q ss_pred HHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 048812 364 AYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 364 ~~~~~g~~~~A~~l~~~m~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 442 (645)
.....|+++++.++...=. -..++ ..-...++.-+-+.|-.+.|+++...-.. =.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 4455788888777664111 11122 34467777888888999998876543322 24566789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 443 ~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+.|.++.++.. +...|..|......+|+++.|++.|++. .-+..|+-+|...|+.+.-.++.+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999888774 7889999999999999999999999876 346678888999999888888777776665
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.19 E-value=2.6 Score=36.46 Aligned_cols=78 Identities=9% Similarity=0.032 Sum_probs=57.2
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 49 RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
...+.+......+..+++.+ ..++...|.|+..|++.. .......+.. ..+......++..|.+.+.++++.-++.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 18 EKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYK 93 (140)
T ss_pred HhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHH
Confidence 33466788888888888887 478889999999999874 3444455542 3455666778888888888888888876
Q ss_pred HH
Q 048812 129 YL 130 (645)
Q Consensus 129 ~m 130 (645)
++
T Consensus 94 k~ 95 (140)
T smart00299 94 KD 95 (140)
T ss_pred hh
Confidence 55
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.18 E-value=2.2 Score=36.60 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 436 LGRAGHLEESANFITSM----PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
..+.|++++|.+.|+.+ |..| ....---|+.++.+.+++++|...+++.++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 44678888888888776 3333 3345566888899999999999999999999887653
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.84 E-value=8.9 Score=36.43 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGT--KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
..|-.=+..-.+.|++++|...|+.+..... +-...+...++.+..+.++.++|....++..+.++-.|++. |.--+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 3344444455678888888888888886421 11255667777788888888888888888887777676643 22333
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-----------------hhH
Q 048812 434 DLLGRAGHLEESANFITSMP-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-----------------GAH 495 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~y 495 (645)
.+++ .|.... ..-|. .-...|..-|+++++.-|++. ..=
T Consensus 114 kgLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 114 KGLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3333 111111 00011 112344455555555566542 122
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 496 VLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 496 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
....+.|.+.|.|.-|..-++.|.+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 36778899999999999999999764
No 243
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=18 Score=39.63 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=79.0
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+++.+.+...+|..-.--+.+--+.-+...|+..+|.++-++..+ ||-..|--=+.+++..+++++-+++.+....
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekfAkskks--- 743 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKFAKSKKS--- 743 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHHHhccCC---
Confidence 445555555666544444455556667788999999999999987 7888888888999999999988877765432
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 490 ~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
|.-|.=....|.+.|+.+||.+++-+.
T Consensus 744 --PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 744 --PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred --CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 466777888999999999999998554
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.69 E-value=1.3 Score=42.38 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTK--PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 435 (645)
|+.-+..| +.|++.+|...|...++.... -....+..|..++...|++++|..+|..+.++++-.|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA--------- 214 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA--------- 214 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---------
Confidence 44433332 344555555555555543211 012233445555555555555555555555444433331
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+..+--|.......|+.++|...++++.+..|..+
T Consensus 215 ----------------------pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 215 ----------------------PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred ----------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 22333444445555566666666666666555543
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.56 E-value=2.9 Score=35.92 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=66.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKP---DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 437 (645)
-.....+.|++++|.+.|+.+... .+. ....-..++.++...+++++|...++..++.+.-.|+ ..|...+.+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 344455678888888888877764 211 2345666777788888888888888877765444444 33444444444
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
.-...+..+.-+- ...-| .+....|...|+++++..|++.
T Consensus 94 ~~~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 3332222111111 11111 2235678888888888888763
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=11 Score=36.65 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=91.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 441 (645)
.......|++.+|..+|+........ +...-..+..++...|+++.|..++..+-.+.. .........=+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 34456678888888888887765222 345555677778888888888888776542110 0011112233455555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHcCCchH-HHHHHHH
Q 048812 442 LEESANFITSMPIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTET--DPLNDGAHVLLANIYAKAGRLDD-MSRIRMK 517 (645)
Q Consensus 442 ~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~--~p~~~~~y~~l~~~~~~~g~~~~-a~~~~~~ 517 (645)
..+..++-++..-.| |...--.|...+...|+.+.|.+.+-.++.. +-.+...-..|+.++..-|.-+. +.+.+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555554445 5555566666777778877777777666663 34455666677777777664443 3344444
Q ss_pred H
Q 048812 518 L 518 (645)
Q Consensus 518 m 518 (645)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.50 E-value=3 Score=43.32 Aligned_cols=150 Identities=19% Similarity=0.122 Sum_probs=88.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH---
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE--- 443 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--- 443 (645)
+..+.+.-+++=++..+ +.||-.+-..++ +--.+.-+.++.+++++..+. |- . .|.+....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----A-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----H-------hhchhhhhhccc
Confidence 34455555555555554 457654443333 233445577888888877642 10 0 011110000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 444 ~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
...+.+..-...|-..+-.-|..++.+.|..++|.+.++++++..|. +-.....|++.+...+++.++..++.+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 01111111122233445566777788899999999999999887764 4457778999999999999999999887655
Q ss_pred CCcccCceeE
Q 048812 522 GLKKQLGYSL 531 (645)
Q Consensus 522 ~~~~~~~~s~ 531 (645)
.+++...+++
T Consensus 325 ~lpkSAti~Y 334 (539)
T PF04184_consen 325 SLPKSATICY 334 (539)
T ss_pred cCCchHHHHH
Confidence 5555554443
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.48 E-value=14 Score=37.87 Aligned_cols=135 Identities=12% Similarity=0.142 Sum_probs=106.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-H
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY-G 430 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~ 430 (645)
+-...|...|..-.+..-.+.|..+|-+..+.| +.|+...+++++.-++ .|+..-|..+|+.-... -||...| +
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 345678888888888888899999999999998 6788888888887655 57777889999876643 3444333 5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 431 CMVDLLGRAGHLEESANFITSM--PIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m--~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
-.++.+.+.++-+.|..+|+.. .+..+ ..+|..+|.--...|++..+..+-+++.++.|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677888999999999999865 23333 5689999998899999999999999999988865
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.97 E-value=10 Score=35.03 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCC----ChHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS-ACSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGC 431 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~ 431 (645)
.+..+...+...+++.++...+.........+. ........ ++...|+++.+...+..... ..| ....+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~ 172 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHH
Confidence 344444444455555566666655554322221 11111111 45566666666666665532 222 2233333
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
....+...++.++|...+.+. ...++ ...+..+...+...++.+.|...+.......|.....+..+...+...|.+
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRY 252 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH
Confidence 333355666667766666655 22232 456666666677777777777777777777766445555555555555666
Q ss_pred hHHHHHHHHHHh
Q 048812 509 DDMSRIRMKLRD 520 (645)
Q Consensus 509 ~~a~~~~~~m~~ 520 (645)
+++...+.....
T Consensus 253 ~~~~~~~~~~~~ 264 (291)
T COG0457 253 EEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHH
Confidence 777766666544
No 250
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.65 E-value=16 Score=36.78 Aligned_cols=276 Identities=14% Similarity=0.092 Sum_probs=162.3
Q ss_pred cCChHHHHHHHccCC---CCCcchHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCChh--hHHHHHHHHhcCCChHHH
Q 048812 140 CGKLKEVCQLFDKLP---NRDVISWNTMISCY--TSMGMYREGLGLLSKMGAEGVSPDEV--TMVSLISARTKLRDLEMG 212 (645)
Q Consensus 140 ~g~~~~A~~~f~~m~---~~~~~~~n~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 212 (645)
.|+-..|+++-.+-. .-|....-.|+.+- .-.|+++.|.+-|+.|... |... -+..|.-.--+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 466666666554433 23444444444433 3369999999999999863 2211 233344444577999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCCChh--hHHHHHHHHHh---cCCHHHHHHHH
Q 048812 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI---DEVDVV--LWTTLVSGYVK---SNERDEARRLF 284 (645)
Q Consensus 213 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~--~~~~li~~~~~---~g~~~~A~~~~ 284 (645)
.+.-+..-..- +.-...+.+++...+..|+++.|.++.+.-+. .++++. .-..|+.+-+. .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877766543 34456788899999999999999999987211 123322 11222222110 01111111111
Q ss_pred HhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHH-HHHH
Q 048812 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT-SVIA 363 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~li~ 363 (645)
.+. ..- .||.+.=- .-..
T Consensus 253 ~~a-----------------------------------------------------------~KL--~pdlvPaav~AAr 271 (531)
T COG3898 253 LEA-----------------------------------------------------------NKL--APDLVPAAVVAAR 271 (531)
T ss_pred HHH-----------------------------------------------------------hhc--CCccchHHHHHHH
Confidence 111 100 23332211 2245
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCH
Q 048812 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 364 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 442 (645)
++.+.|+..++-.+++.+-+....|+.. .+....+.|+.- ..-++...+-..++|+ .+..-.+..+-...|++
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 7788899999999999998876666632 222334555432 2223333333345665 56666777777788888
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHh
Q 048812 443 EESANFITSM-PIPPDVSIWSSLLRAC-RCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 443 ~~A~~~~~~m-~~~pd~~~~~~ll~a~-~~~g~~~~a~~~~~~~~~ 486 (645)
..|..--+.. ...|....|..|...- ...||-.++...+.+.+.
T Consensus 346 ~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 346 SAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 8777655544 4567788887777774 445899999988888876
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.65 E-value=0.94 Score=43.87 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
++..++.++...|+.+.+...++++.+.+|-+...|..|+.+|...|+...|+..++.+++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666666677777777777777777777777777777777777777777777776655
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.62 E-value=31 Score=39.99 Aligned_cols=82 Identities=13% Similarity=0.016 Sum_probs=37.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~ 475 (645)
.+.+|-..|++.++..+..++.. +-.--..+-..|+.-+...++.-+|-++..+....|... +.-+++...++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHH
Confidence 34455555555555555544431 100012222455555566666666666555543222211 12233334455
Q ss_pred HHHHHHHHH
Q 048812 476 LAEHAFKHL 484 (645)
Q Consensus 476 ~a~~~~~~~ 484 (645)
+|.++....
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 555554443
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.39 E-value=4.3 Score=39.81 Aligned_cols=113 Identities=11% Similarity=0.010 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH----HHHHHHcCCHH
Q 048812 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM----VDLLGRAGHLE 443 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 443 (645)
+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+...|.-+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444555555555443 333444444444555555555555555544442 123333222222 22233455555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048812 444 ESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKH 483 (645)
Q Consensus 444 ~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~ 483 (645)
+|++.-++. ++.| |.-.-.++...+-..|+..++.+...+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555443 3322 333333344444444555555554443
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.35 E-value=1.9 Score=39.57 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=91.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcC
Q 048812 364 AYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYGCMVDLLGRAG 440 (645)
Q Consensus 364 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g 440 (645)
.|-..|-..-|.-=|.+... +.|+ ...||-+.--+...|+++.|.+.|+...+ +.|. -.+.|.=|.. .-.|
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~-YY~g 147 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIAL-YYGG 147 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceee-eecC
Confidence 35555666666655665554 7888 56777777788899999999999998774 5664 2233332322 2357
Q ss_pred CHHHHHHHHHhC----CCCCCHHHHHHHHH--------------HHHhcCChH-------------HHHHHHHHHHhcCC
Q 048812 441 HLEESANFITSM----PIPPDVSIWSSLLR--------------ACRCHQNVK-------------LAEHAFKHLTETDP 489 (645)
Q Consensus 441 ~~~~A~~~~~~m----~~~pd~~~~~~ll~--------------a~~~~g~~~-------------~a~~~~~~~~~~~p 489 (645)
++.-|.+=|... |..|=...|--|.. -+..+.+-. .-+.+++++.+-..
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 888777655443 43333334433222 122221100 01223333333222
Q ss_pred CC-------chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 490 LN-------DGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 490 ~~-------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++ ..+|.-|..-|...|..++|..+++.....+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22 3578889999999999999999999876543
No 255
>PRK15331 chaperone protein SicA; Provisional
Probab=91.11 E-value=1.4 Score=38.71 Aligned_cols=87 Identities=7% Similarity=-0.056 Sum_probs=53.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
.--+-+.|++++|..+|+-+...+.- |..-+..|..+|-..++++.|...|......+. .|+...--...+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33455678888888888777664321 333344444455556777777777777665552 3333344456677777777
Q ss_pred HHHHHHHcc
Q 048812 245 GEAQKLLGR 253 (645)
Q Consensus 245 ~~A~~~~~~ 253 (645)
+.|+..|+.
T Consensus 122 ~~A~~~f~~ 130 (165)
T PRK15331 122 AKARQCFEL 130 (165)
T ss_pred HHHHHHHHH
Confidence 777777776
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.90 E-value=20 Score=36.50 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTK--P-DQVTFIALLSACSH---GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-d~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
.|+-.|-...+++.-+++++.|...... + ....-.....|+.+ .|+.++|.+++..+.. ..-.++.++|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHH
Confidence 4555688999999999999999874211 1 11112233446666 9999999999998552 24456777887776
Q ss_pred HHHH----H-----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh----HHHHHHH----HHHHhc---CC-CC
Q 048812 434 DLLG----R-----AGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNV----KLAEHAF----KHLTET---DP-LN 491 (645)
Q Consensus 434 ~~~~----~-----~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~----~~a~~~~----~~~~~~---~p-~~ 491 (645)
..|- . ...+++|.+.+.+. .++||...--.+..-+...|.. .+..++. ..+.+. ++ .+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 6553 2 22478888888876 5666654322222223333322 1222222 111121 12 23
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 492 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
-..+.++..++.-.|+.++|.+..++|.+..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 4566689999999999999999999998653
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.84 E-value=8.7 Score=37.26 Aligned_cols=121 Identities=13% Similarity=0.127 Sum_probs=87.5
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCC
Q 048812 398 SACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS---LLRACRCHQN 473 (645)
Q Consensus 398 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~---ll~a~~~~g~ 473 (645)
......|+..++...|+..... .| +...--.|...|...|+.++|..++..+|.+-...-|.. -|..+.+..+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3456789999999999988853 33 356677889999999999999999999976544444433 2223333333
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
..+... +++-...+|+|...-..|...|...|+.++|.+.+=.+.+++
T Consensus 219 ~~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 219 TPEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 333322 333445789999999999999999999999998877765544
No 258
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=1.5 Score=46.28 Aligned_cols=149 Identities=17% Similarity=0.118 Sum_probs=101.7
Q ss_pred hcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHH
Q 048812 85 FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164 (645)
Q Consensus 85 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~l 164 (645)
-.|+++.|-.++..++++. -+.++.-+-++|..++|+++--.-...-.+..+.|+++.|.++..+. .+..-|..|
T Consensus 598 mrrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~--~s~~Kw~~L 672 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEA--NSEVKWRQL 672 (794)
T ss_pred hhccccccccccccCchhh---hhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhh--cchHHHHHH
Confidence 3466777766666665332 34455555666777777665322211114556778888888876554 467789999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
..+..+.|++..|.+.|..... |.+|+-.+...|+-+....+-....+.| .. |.-.-+|...|++
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~ 737 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDY 737 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCH
Confidence 9999999999999999987654 5667777778888776666666666665 22 3334467788999
Q ss_pred HHHHHHHcc
Q 048812 245 GEAQKLLGR 253 (645)
Q Consensus 245 ~~A~~~~~~ 253 (645)
+++.+++.+
T Consensus 738 ~~C~~lLi~ 746 (794)
T KOG0276|consen 738 EECLELLIS 746 (794)
T ss_pred HHHHHHHHh
Confidence 999998876
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.79 E-value=10 Score=39.61 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=64.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCCH--HHHHHHHHHHH
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI--PPDV--SIWSSLLRACR 469 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~pd~--~~~~~ll~a~~ 469 (645)
..+..++.+.|+.++|.+.|+++.+++...-...+...|+..|...+++.++..++.+... -|.. ..|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4456667788888888888888876554333455677788888888888888888887631 1332 34555443444
Q ss_pred hcCC---------------hHHHHHHHHHHHhcCCCCc
Q 048812 470 CHQN---------------VKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 470 ~~g~---------------~~~a~~~~~~~~~~~p~~~ 492 (645)
..++ ...|.++..++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3333 1235677888888777543
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.79 E-value=15 Score=39.24 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=110.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQ-----VTFIALLSACSH----GGLVDEGYDFLSKKSRVYNIKPKMQ 427 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 427 (645)
...+++..+-.|+-+.+++++.+-.+.+ ++-.. .+|..++..+.. ....+.+.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 4567777788899999999998876532 22111 234444544433 46788899999999864 56655
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH-HHH
Q 048812 428 HYGC-MVDLLGRAGHLEESANFITSMP-IP-----PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV-LLA 499 (645)
Q Consensus 428 ~~~~-li~~~~~~g~~~~A~~~~~~m~-~~-----pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~-~l~ 499 (645)
.|.- -...+...|++++|.+.|++.- .+ .....+--+.-.+....++++|...|.++.+........|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5533 3456778899999999999752 11 12223333455577789999999999999997766555555 455
Q ss_pred HHHHHcCCc-------hHHHHHHHHHHh
Q 048812 500 NIYAKAGRL-------DDMSRIRMKLRD 520 (645)
Q Consensus 500 ~~~~~~g~~-------~~a~~~~~~m~~ 520 (645)
-+|...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 566788888 788888877654
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.52 E-value=9.7 Score=32.13 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
..+....-++.+...|+-+.-.++...+ .-++++...-.+.+||.+.|+..++.+++.++.+.+-
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4456667778899999999999998886 3568889999999999999999999999999988654
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.15 E-value=2.3 Score=45.31 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHH----cCCHHHH
Q 048812 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-----QHYGCMVDLLGR----AGHLEES 445 (645)
Q Consensus 375 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~----~g~~~~A 445 (645)
.-+|.-|... ++| .+..+++...-.|+-+.|.+.+....+..++.-.. -.|..++..+.. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555543 444 35566677777899999999998877644444332 234444443332 4578899
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcC----CCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 446 ANFITSM-PIPPDVSIWSSLLRA-CRCHQNVKLAEHAFKHLTETD----PLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 446 ~~~~~~m-~~~pd~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~----p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
.++++.+ ..-|+...|.-.-.- +...|++++|.+.++++.... .-....+.-++..+.-..+|++|.+.+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999998 445887777554443 778999999999999877522 1123456678889999999999999999997
Q ss_pred hCC
Q 048812 520 DMG 522 (645)
Q Consensus 520 ~~~ 522 (645)
+..
T Consensus 333 ~~s 335 (468)
T PF10300_consen 333 KES 335 (468)
T ss_pred hcc
Confidence 743
No 263
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.12 E-value=0.11 Score=45.37 Aligned_cols=117 Identities=14% Similarity=0.193 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHh
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (645)
+.+....+....+.+.+...++...|.|+..|++.++.+...+.++.... .-...++..+-+.|.+++|.-+|.++.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 21 NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHHcc
Confidence 34555566677777766667799999999999999988888888874333 445677888888899999998887654
Q ss_pred hcC---chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCC
Q 048812 132 TRT---VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173 (645)
Q Consensus 132 ~~~---~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~ 173 (645)
... .++...++++.|.+.+.+. +|...|..+++.+...+.
T Consensus 98 ~~~~al~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 98 NHDEALEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp THTTCSSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred cHHHHHHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 433 2233445555555444444 356778888877766654
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.11 E-value=2.8 Score=35.10 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=43.4
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCC
Q 048812 401 SHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM----PIPPD--VSIWSSLLRACRCHQN 473 (645)
Q Consensus 401 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd--~~~~~~ll~a~~~~g~ 473 (645)
+..|+++.|++.|.+... +-| ....||.=..++--.|+.++|++=+++. +-+.- -..|..=..-|+..|+
T Consensus 54 aE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555555555544442 222 3444555555555555555554444332 11100 1112222233677788
Q ss_pred hHHHHHHHHHHHhcCCCC
Q 048812 474 VKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~ 491 (645)
.+.|..-|+.+-+++..-
T Consensus 131 dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHhHHHHHHhCCHH
Confidence 888888888877776543
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=3.7 Score=40.23 Aligned_cols=115 Identities=14% Similarity=-0.000 Sum_probs=89.3
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHH----HHHHHHHHhcCChH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIW----SSLLRACRCHQNVK 475 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~----~~ll~a~~~~g~~~ 475 (645)
..|...+|-..++++.++ .+.|...+.-.-+++.-.|+.+.-...++++ |. .||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456777777888888865 3446777777778888999999888888887 43 5665433 33333456789999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+|++..++.++++|.+..+.-.+..++.-.|+..++.+...+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999888888888888888888888876654
No 266
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.71 E-value=4.6 Score=32.03 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048812 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 187 (645)
|++...+...+..+++..+.+-+- +...|++++|..+.+.++.||+..|-+|-.. +.|..+++..-+.+|-.+
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIRlsS-----LmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIRLSS-----LMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHH-----HHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 344444555554566666555543 2567999999999999999999999888654 567777777777777777
Q ss_pred CCCCChhhHHH
Q 048812 188 GVSPDEVTMVS 198 (645)
Q Consensus 188 g~~p~~~t~~~ 198 (645)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
No 267
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.60 E-value=2.4 Score=38.30 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=67.3
Q ss_pred HHHHcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 435 LLGRAGHLEESANFITSM-P-IPP-----DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~-~~p-----d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
-+.+.|++++|..-+... . .++ -.+.|..-..+..+.+.++.|+.-..+.++++|.+..+...-..+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777777666654 1 111 134455555667888999999999999999999887888888889999999
Q ss_pred chHHHHHHHHHHhCC
Q 048812 508 LDDMSRIRMKLRDMG 522 (645)
Q Consensus 508 ~~~a~~~~~~m~~~~ 522 (645)
+++|+.=++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999997744
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.26 E-value=0.64 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
+|..+...+...|+.++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888774
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.25 E-value=36 Score=39.56 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=81.3
Q ss_pred HHHHcCChhHHHHHHHHHhhcCch------hhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048812 113 NQLINGYPQEVFAIYLYLVTRTVL------LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186 (645)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~------~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 186 (645)
+-..+.++.+=+.++++....... =...+++++|+.-+.++. ...|+-.+.---+.|.+.+|+.++
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly----- 931 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY----- 931 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee-----
Confidence 334456666766666666543311 123466677766665554 234444555455666777777665
Q ss_pred CCCCCChhhHHHHHHHHh----cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCC-CCh
Q 048812 187 EGVSPDEVTMVSLISART----KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE-VDV 261 (645)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~ 261 (645)
.|+...+..+..+|+ ....++.|--.|+..-+. .--+.+|-.+|++.+|..+-.+ +.. .|.
T Consensus 932 ---~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~q--l~~~~de 997 (1265)
T KOG1920|consen 932 ---KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQ--LSEGKDE 997 (1265)
T ss_pred ---ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHh--hcCCHHH
Confidence 567666666655543 334444444433332111 1234556666666666666655 222 232
Q ss_pred hh--HHHHHHHHHhcCCHHHHHHHHHhc
Q 048812 262 VL--WTTLVSGYVKSNERDEARRLFDEM 287 (645)
Q Consensus 262 ~~--~~~li~~~~~~g~~~~A~~~~~~m 287 (645)
.. --.|+.-+...+++-+|-++..+-
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 22 245666666667666666665543
No 270
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.06 E-value=35 Score=36.51 Aligned_cols=347 Identities=12% Similarity=0.036 Sum_probs=186.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM-VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 235 (645)
+...|+++|.---+....+.+...+..++.. -|..+-| .....-=.+.|..+.+.++|+.-++ |++.....|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 5566777776555555555666667777654 5665533 2333333466778888888887774 4566666666655
Q ss_pred HHHH-HcCCHHHHHHHHcccCC-CC---CChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchh
Q 048812 236 DMYF-KCGKIGEAQKLLGRYEI-DE---VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310 (645)
Q Consensus 236 ~~y~-~~g~~~~A~~~~~~m~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~ 310 (645)
.... ..|+.+..++.|+..+. .+ .+...|-..|.--...+++.....++++..+--..-++....-|.+.-+...
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 4333 45677777777776221 12 2556688788777778888888888888764333333333322222110000
Q ss_pred hhhhccccchhhHHHHHHHHH---HcCCCCCcHHHHHHHHhhcCcCC-h--hHH-------HHHHHHHHHcCCHHHHHHH
Q 048812 311 YKSCASIGALYHGIWVHVYIK---KNQISIDNIELAYDLFSEISEKN-V--YLW-------TSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 311 ~~a~~~~~~l~~g~~i~~~~~---~~~~~~~~~~~A~~~f~~~~~~~-~--~~~-------~~li~~~~~~g~~~~A~~l 377 (645)
.. .+-..+...++-..+. +..+.....+.-....+....|. . ..- +..-..|-..-...+....
T Consensus 201 ~~---~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 201 EK---ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred hh---hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 00 0000000000000000 01111111111111111111111 0 011 1111122222233333334
Q ss_pred HHHHHHc---CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 048812 378 FLEMEET---GTKP----DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450 (645)
Q Consensus 378 ~~~m~~~---g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (645)
|+.-+.. .++| +..+|...+.--...|+.+...-.|+.... .+..=...|--.+.-....|+.+-|..++.
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 4443322 1333 356788888888888999988888877652 111124555566666666799888888776
Q ss_pred hC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 048812 451 SM-----PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 451 ~m-----~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 513 (645)
.. +..|......+.+ +-..||...|..+++.+.+--|....+-.--+++..+.|+.+.+..
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 65 3344444444333 4557899999999999988558766655567777888888888873
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.04 E-value=28 Score=35.36 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
++.+.+...|+++.++.|.....|..+...+.+
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 778888888888888888777777766666543
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.95 E-value=0.68 Score=29.16 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
+|..|...|...|++++|+.++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666666666666666666443
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.33 E-value=27 Score=34.31 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 230 LLNYLVDMYFKCGKIG---EAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 230 ~~~~li~~y~~~g~~~---~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
+...|+.+|...+..+ +|.++.+.+....|+ ...+-.-+..+.+.++.+++.+.+.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 4555666666666544 344444443223333 3334344455555666666666666665
No 274
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.13 E-value=48 Score=36.95 Aligned_cols=54 Identities=13% Similarity=-0.058 Sum_probs=26.2
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHcccC-CCCCChhhHHHHHHHHHhcCCHH
Q 048812 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERD 278 (645)
Q Consensus 225 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~~~~~~~~~~li~~~~~~g~~~ 278 (645)
+.+......+..+....|+.++|......+= .........+.++..+.+.|...
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence 3344444555566666666554433333210 11223455666666666555543
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.04 E-value=1.2 Score=28.02 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEME 382 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~ 382 (645)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888754
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.02 E-value=14 Score=36.37 Aligned_cols=162 Identities=9% Similarity=0.010 Sum_probs=93.7
Q ss_pred HHcCCHHHHHHHHHHHHHcC--CCCCHH------HHHHHHHHHhccC-cHHHHHHHHHHhHHhc-------CCCCC----
Q 048812 366 AMAGHAQKAIDLFLEMEETG--TKPDQV------TFIALLSACSHGG-LVDEGYDFLSKKSRVY-------NIKPK---- 425 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g--~~pd~~------t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~-------~~~p~---- 425 (645)
.+.|+.+.|..++.+....- ..|+.. .|+.-.. ....+ +++.|...+++..+-. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46799999999999887532 345432 2333333 33445 8899988888766431 12233
Q ss_pred -hHHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 426 -MQHYGCMVDLLGRAGHLE---ESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 426 -~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
..+...++.+|...+..+ +|.++++.+ .--|+ +.++-.-+..+.+.++.+.+.+.+.+|+..-+-....+...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 345566777777776654 444555544 11122 334444556666688888888888888875443334555555
Q ss_pred HHHHH--cCCchHHHHHHHHHHhCCCcccCc
Q 048812 500 NIYAK--AGRLDDMSRIRMKLRDMGLKKQLG 528 (645)
Q Consensus 500 ~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~ 528 (645)
..+-. ......|...+..+....+.+.+.
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 55422 122345666666665555544444
No 277
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.83 E-value=28 Score=33.79 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
++...+.|...|.+.+|.++.++++.++|-+...+-.|++.|+..|+--.|.+-++.+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556689999999999999999999999999999999999999998778877777643
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.68 E-value=26 Score=33.37 Aligned_cols=167 Identities=16% Similarity=0.140 Sum_probs=100.0
Q ss_pred CCCCcHHHHHHHHhhcCcCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHhcc--
Q 048812 335 ISIDNIELAYDLFSEISEKN------VYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQ--VTFIALLSACSHG-- 403 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~--~t~~~ll~a~~~~-- 403 (645)
+..+++++|.+.|+.+...- ..+--.++-++-+.+++++|+..+++.... +-.||. +.|...++-+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45569999999999887521 233444566777899999999999997654 444552 3444444433222
Q ss_pred --CcHH---HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHH
Q 048812 404 --GLVD---EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI--WSSLLRACRCHQNVKL 476 (645)
Q Consensus 404 --g~~~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~--~~~ll~a~~~~g~~~~ 476 (645)
.+.. +|..-|+.++..+ |+. .-..+|...+..+. |... =.++.+-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 2222 2333333333332 221 11111111111110 1000 0234556889999999
Q ss_pred HHHHHHHHHhcCCCCch---hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 477 AEHAFKHLTETDPLNDG---AHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 477 a~~~~~~~~~~~p~~~~---~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|..-++++++.-|+.+. .+..|.++|...|-.++|.+.-+-+..
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99999999997766544 455678889999999999988776644
No 279
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.17 E-value=14 Score=32.04 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=60.7
Q ss_pred HcCCHHHHHHHHcccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhcccCC-chhHHHHHHhhhccCCchhhhhhc
Q 048812 240 KCGKIGEAQKLLGRYEIDEVD---VVLWTTLVSGYVKSNERDEARRLFDEMVERN-LISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
..++.+++..+++.|..-.|+ ..++- ...+...|++++|.++|++..+.. ..++...+.++|-.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~---------- 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN---------- 89 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH----------
Confidence 478888888888886555553 23333 334678899999999999887544 33444444433322
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 382 (645)
...-..|..........|...+|+.+.+.+.
T Consensus 90 ------------------------------------al~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 90 ------------------------------------AKGDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ------------------------------------hcCChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 1223346666666667777777887777776
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.99 E-value=2.7 Score=36.82 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=22.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 471 ~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
.++.+.++.++.-+.-+.|..+..-..-..++...|+|.+|.++++.+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.93 E-value=0.88 Score=30.19 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=10.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHcc
Q 048812 232 NYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~~~~ 253 (645)
..+...|...|++++|.++|++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444444444444444
No 282
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.61 E-value=42 Score=34.64 Aligned_cols=127 Identities=12% Similarity=0.101 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYN-IKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSI-WSSLLRAC 468 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~-~~~ll~a~ 468 (645)
.|-..+++-.+..-++.|+.+|-+..+ .| +.+++.++++++.-++ .|+..-|.++|+-- ..-||... -.-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345566666677778888999988884 45 5678888898888665 67778888888753 32344443 35566666
Q ss_pred HhcCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 469 RCHQNVKLAEHAFKHLTETDP--LNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p--~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
...++-+.|..+|+..++.-. .-...|..++.--..-|++..|..+-+.|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778888899999997665221 2245777788877888888877777777755
No 283
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.56 E-value=9.3 Score=34.22 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 048812 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 525 (645)
+++|...|+++.+.+|.+ ..|..-+.+.. +|-+++.++.++++..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 577888888888899987 67776666664 3888888887776543
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.47 E-value=13 Score=37.11 Aligned_cols=162 Identities=13% Similarity=0.062 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEE-TGTKPD---QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KMQ 427 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 427 (645)
.+|-.+..++-+.-++.+++.+-..-.. .|..|. .....++-.|....+.++++.+.|+...+...-.. ...
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3445555555555555566555443322 123331 12233455566667778888888887764222111 246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH-------hCCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCch
Q 048812 428 HYGCMVDLLGRAGHLEESANFIT-------SMPIPPDVS-----IWSSLLRACRCHQNVKLAEHAFKHLTET--DPLNDG 493 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~-------~m~~~pd~~-----~~~~ll~a~~~~g~~~~a~~~~~~~~~~--~p~~~~ 493 (645)
+|-.|...|++..++++|.-+.. ..++.--.. +.-.+.-+++..|.+..|.+.-++..++ ...|..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 78888888888888887664443 333321111 2233455678888888888888877663 222323
Q ss_pred ----hHHHHHHHHHHcCCchHHHHHHHH
Q 048812 494 ----AHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 494 ----~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
....+.++|-..|+.|.|..-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 334688888888887776655543
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.33 E-value=18 Score=32.69 Aligned_cols=95 Identities=11% Similarity=0.154 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC----hH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ--VTFIALLSACSHGGLVDEGYDFLSKKSRVYNI--KPK----MQ 427 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~----~~ 427 (645)
..|..+..-|.+.|+.++|++.|.++.+.-..|.. ..+..+|..+...+++.....+..+......- .++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46788899999999999999999999987666653 45678888888889998888887776632111 111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
+|..|. +...|++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 333333 23467888888887766
No 286
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.25 E-value=27 Score=32.04 Aligned_cols=198 Identities=19% Similarity=0.140 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEI---DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
..........+...+.+..+...+..... .......+..+...+...+....+.+.+......+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----------- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----------
Confidence 45566666777777777777776665321 2224445555666666666666776666655432211
Q ss_pred cCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 048812 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA-AYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 305 ~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~ 383 (645)
+...+..... .+...|++++|...|.+...
T Consensus 128 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 128 -------------------------------------------------PDLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred -------------------------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0111112222 67788899999999888855
Q ss_pred cCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 048812 384 TGTKP----DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP--KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP 456 (645)
Q Consensus 384 ~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 456 (645)
..| ....+......+...++.+.+...+..... ..| ....+..+...+...+++++|...+... ...|
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 159 --LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred --cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 333 334444444456778888899988888774 233 3677788888888888999999888876 4445
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 457 D-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 457 d-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
+ ...+..+...+...++.+.+...+.+.....|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4 455556666666777899999999999998886
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.99 E-value=24 Score=31.13 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=55.7
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHH
Q 048812 400 CSHGGLVDEGYDFLSKKSRVYNIKPKM-QHYGCMVDLLGRAGHLEESANFITSMP-IPPDVSIWSSLLRACRCHQNVKLA 477 (645)
Q Consensus 400 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a 477 (645)
-...++.+++..++..+.- +.|.. .+-..-...+.+.|++.+|..+|+++. -.|....-.+|+.-|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 3456677777777777763 55652 222333445678888888888888883 334445556677667666555555
Q ss_pred HHHHHHHHhcCCC
Q 048812 478 EHAFKHLTETDPL 490 (645)
Q Consensus 478 ~~~~~~~~~~~p~ 490 (645)
....+++++.+++
T Consensus 97 r~~A~evle~~~d 109 (160)
T PF09613_consen 97 RRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHhcCCC
Confidence 5666667776653
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.86 E-value=7.5 Score=35.23 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=50.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh--hHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV--TMVSLISARTKLRDLEMGKNLHLFLEES 222 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (645)
..|..+..-|.+.|+.++|++.|.++.+....|... .+..+|+.+...+++..+......+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 468889999999999999999999998875555433 5677888888888988888776666543
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.63 E-value=39 Score=33.55 Aligned_cols=134 Identities=10% Similarity=0.153 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----cHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCH
Q 048812 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSH--GG----LVDEGYDFLSKKSRVYNIKP--KMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 371 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~g----~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 442 (645)
+++.+.+++.|.+.|.+-+..+|.+....... .. ...++..+|+.|++.+.+-- +-..+..|+-. +.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788999999999888888774443333 22 35678999999998776533 33444444322 33333
Q ss_pred H----HHHHHHHhC---CCCC-CHH-HHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 443 E----ESANFITSM---PIPP-DVS-IWSSLLRACRCHQN--VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 443 ~----~A~~~~~~m---~~~p-d~~-~~~~ll~a~~~~g~--~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
+ +++.+++.+ ++.. |.. ....++.-+....+ ..++.++++.+.+.+-.-...|...+.+++-.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~ 230 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLE 230 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcC
Confidence 2 333333333 4433 332 33333333322222 335666666666644322223334444444333
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.36 E-value=22 Score=31.65 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=10.1
Q ss_pred HHHHHHHHcCCHHHHHHHHcc
Q 048812 233 YLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~ 253 (645)
+|.-+-.+.|++.+|.+.|.+
T Consensus 172 ALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHhHHHHhccchHHHHHHHHH
Confidence 344444445555555555544
No 291
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.33 E-value=4.3 Score=34.25 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhc---CChHHHHHHHHHHHh-cCCCCchhH-HHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 457 DVSIWSSLLRACRCH---QNVKLAEHAFKHLTE-TDPLNDGAH-VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 457 d~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~-~~p~~~~~y-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
+..+--.+..++.+. .+..+++.+++.+.+ -.|....-| ..|.-.+.+.|+++.+.++.+...+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e--------- 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE--------- 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC---------
Confidence 333333344444443 356778888888886 445443333 356777888889999988888776532
Q ss_pred EEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc
Q 048812 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ 571 (645)
Q Consensus 532 i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 571 (645)
|+..++...=+.+..+|.++|++
T Consensus 102 -----------------~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 102 -----------------PNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred -----------------CCcHHHHHHHHHHHHHHhhccee
Confidence 34445554445677788888876
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.19 E-value=3.2 Score=35.80 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=32.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 471 ~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++.++++.++..+.-+.|+.+..-..-..++...|+|+||.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5566666666666666666666666666666666666666666666665443
No 293
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.86 E-value=49 Score=36.80 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=22.0
Q ss_pred hHHHHHHHHH-----HHHcCCHHHHHHHHHhCCCCC
Q 048812 426 MQHYGCMVDL-----LGRAGHLEESANFITSMPIPP 456 (645)
Q Consensus 426 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p 456 (645)
..++..|+++ +...|++++|++.++++++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 4566666554 568899999999999998877
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.38 E-value=2.3 Score=26.04 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 383 (645)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577777888888888888888887776
No 295
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.15 E-value=38 Score=33.62 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048812 371 AQKAIDLFLEMEETGTKPDQVTFIAL 396 (645)
Q Consensus 371 ~~~A~~l~~~m~~~g~~pd~~t~~~l 396 (645)
..++.++++.+.+.|+++....|..+
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHH
Confidence 45778888888888888776665443
No 296
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.91 E-value=57 Score=33.82 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=28.1
Q ss_pred CChhhhhhHHHHHHhcCChHHHHHHHhhCC----C----CCcccHHHHHHHH
Q 048812 71 RDPQISTQVFEFLVFTGDLGYAQQIIRQGD----E----PEIKIWNSIIENQ 114 (645)
Q Consensus 71 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~----~~~~~~~~li~~~ 114 (645)
+|-..-+..++.+...|.+.+++.++++|. + -|+.+||.++-.+
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 455556666677777777777777777664 1 3566666644444
No 297
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.76 E-value=7.1 Score=27.15 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCc
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL 570 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 570 (645)
...++-++.+.|++++|.+..+.+.+ ..|...++......+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45678889999999999999999866 346677777777778888888874
No 298
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.57 E-value=1.4e+02 Score=37.96 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=26.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGK 213 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~ 213 (645)
|.-....|++..|...|+++.+. .|+ ..+++.+++.-...+.+....
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i 1503 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEI 1503 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHH
Confidence 33445566777777777777655 333 445666665555555555443
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.50 E-value=12 Score=35.65 Aligned_cols=187 Identities=10% Similarity=0.085 Sum_probs=120.7
Q ss_pred cCCCCCcHHHHHHHHhhcCc----C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC--CHHHHHHHHHHH
Q 048812 333 NQISIDNIELAYDLFSEISE----K---NVYLWTSVIAAYAMAGHAQKAIDLFLEMEET---GTKP--DQVTFIALLSAC 400 (645)
Q Consensus 333 ~~~~~~~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p--d~~t~~~ll~a~ 400 (645)
.|+..+..++|..-|....+ + .-...-.||..+.+.|++++.++.|.+|... .+.- +..+.++++.-.
T Consensus 36 K~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyi 115 (440)
T KOG1464|consen 36 KGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYI 115 (440)
T ss_pred ccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 45666788899988887654 1 2234567899999999999999999998642 2222 356778888877
Q ss_pred hccCcHHHHHHHHHHhHHh----cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC--C-----CC-------CHHHHH
Q 048812 401 SHGGLVDEGYDFLSKKSRV----YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP--I-----PP-------DVSIWS 462 (645)
Q Consensus 401 ~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~-----~p-------d~~~~~ 462 (645)
+.+.+.+.-.++++.-... .+-..-..+-.-|...|...|.+.+-.++++++. . .- =..+|.
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 7776666655555433221 1112223444667788888888888888887761 0 01 134677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH------HHHHHHHHHcCCchHHHH-HHHHHH
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH------VLLANIYAKAGRLDDMSR-IRMKLR 519 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y------~~l~~~~~~~g~~~~a~~-~~~~m~ 519 (645)
.=|..|..+++-..-..++++.+.+...-|-.. .+=..+..+.|+|++|-. .|+..+
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 777888889999999999999988653222111 122345667788887753 444443
No 300
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.45 E-value=32 Score=30.63 Aligned_cols=133 Identities=15% Similarity=0.168 Sum_probs=81.2
Q ss_pred HHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhcc
Q 048812 61 HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKC 140 (645)
Q Consensus 61 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 140 (645)
..-+.+.++++++.++..|++.+.+.|.+..-..++.--.-+|.......+-.+. +....+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~----------------- 77 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPA----------------- 77 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHH-----------------
Confidence 3344567899999999999999999999999888887654444333333222211 111111
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 048812 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220 (645)
Q Consensus 141 g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (645)
..-|..++.++. ..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++....
T Consensus 78 --~Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 78 --YQLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --HHHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222444444433 25666778888899999998888775322 22233446666666666665555555555
Q ss_pred Hh
Q 048812 221 ES 222 (645)
Q Consensus 221 ~~ 222 (645)
..
T Consensus 148 ~~ 149 (167)
T PF07035_consen 148 ER 149 (167)
T ss_pred Hh
Confidence 43
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.28 E-value=2.6 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666655
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.63 E-value=12 Score=36.37 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR----VYNIKPKMQHYG 430 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 430 (645)
..++..++..+...|+.+.+...++++... -+-|...|..++.+|...|+...|+..|+.+.+ +.|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456777888888888888888888888875 244778888888888888888888888877664 446666655544
Q ss_pred HHHH
Q 048812 431 CMVD 434 (645)
Q Consensus 431 ~li~ 434 (645)
....
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 4433
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.47 E-value=2.4 Score=26.29 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=14.1
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHH
Q 048812 225 KISGSLLNYLVDMYFKCGKIGEAQ 248 (645)
Q Consensus 225 ~~~~~~~~~li~~y~~~g~~~~A~ 248 (645)
+.+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666666554
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.17 E-value=1.3 Score=38.42 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=63.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHH
Q 048812 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278 (645)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~ 278 (645)
++..+.+.+.+....++++.+.+.+...+....+.++..|++.+..+...++++. ... .-...++..|-+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~--~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT--SNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS--SSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc--ccc---cCHHHHHHHHHhcchHH
Confidence 5667777788888888888888777667788899999999999888888888875 322 33345677777788888
Q ss_pred HHHHHHHhcc
Q 048812 279 EARRLFDEMV 288 (645)
Q Consensus 279 ~A~~~~~~m~ 288 (645)
+|.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8888887765
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.97 E-value=65 Score=36.07 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 440 (645)
+|.-|....+..+-..+++.+.+.|+. +...-..||.+|.+.+++++-.++.+..- + |.- ..-....+..+-+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhC
Confidence 344444455556666677777777765 33344567778888888877666554322 1 111 112344566677777
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048812 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484 (645)
Q Consensus 441 ~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~ 484 (645)
-+++|.-+-.+.+. +......++ -..+|+++|.+.++.+
T Consensus 478 yl~~a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777777766653 333333333 3457788887776654
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.28 E-value=16 Score=33.40 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=55.5
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHHcCCH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES---TMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~ 244 (645)
..+.|+ ++|++.|-++...+.--++.....|...| ...|.+++.+++-.++.. +-.+|+.++.+|++.|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 67888888888776554444444444444 467888888888777664 2256788888888888888888
Q ss_pred HHHH
Q 048812 245 GEAQ 248 (645)
Q Consensus 245 ~~A~ 248 (645)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8775
No 307
>PRK09687 putative lyase; Provisional
Probab=80.12 E-value=63 Score=31.76 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=29.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
+|...-..-+.++++.|+ ..|+..+-+..+.+ + ....++.++...|.. +|...+..+.
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 344444455555555555 34444444444332 1 233455666666664 4555555555
No 308
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=78.96 E-value=28 Score=34.80 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcCcCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHH-----HHHHHHHHHhccCcHHH
Q 048812 340 IELAYDLFSEISEKN--VYLWTSVIAAYAMAGHAQKAIDLFLEMEE----TGTKPDQV-----TFIALLSACSHGGLVDE 408 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~~-----t~~~ll~a~~~~g~~~~ 408 (645)
++.|.++-....++- ...+-++.+.|++..++++|+-+..+..+ .|+.-=.. ....+.-++...|.+..
T Consensus 145 fe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lgd 224 (518)
T KOG1941|consen 145 FEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGD 224 (518)
T ss_pred HHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccccc
Confidence 344444444444432 35678888888999999888877665543 22221111 22333446667777777
Q ss_pred HHHHHHHhHHh---cCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 048812 409 GYDFLSKKSRV---YNIKPK-MQHYGCMVDLLGRAGHLEESANFITS 451 (645)
Q Consensus 409 a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (645)
|.+.-++..+- .|-.|. ....-++.|.|-..|+.|.|..-+++
T Consensus 225 A~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 225 AMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 77777665532 222221 34446778888888887777766554
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.45 E-value=5 Score=25.69 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 383 (645)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887654
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.30 E-value=14 Score=29.59 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=33.8
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 451 ~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
.+-.-|++.+..+.+.||++.+|+..|.++++-+...-.+....|-.++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3456689999999999999999999999999988875444433665543
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.11 E-value=3.7 Score=24.69 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=17.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
+..++...|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555666777777777777666664
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.74 E-value=14 Score=29.28 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 452 m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
+-.-|++.+..+-+.||++.+|+..|.++++-+...-..+...|-.+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 45668888899999999999999999999998875443344455544
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.62 E-value=50 Score=33.48 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP----LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p----~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
....+|..+...+++.|+++.|...+.++...++ ..+.....-+......|+..+|...++...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999998652 245667777888999999999999988887633
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.02 E-value=5.8 Score=24.02 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 383 (645)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667777777888888887777765
No 315
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.01 E-value=68 Score=30.42 Aligned_cols=48 Identities=4% Similarity=-0.054 Sum_probs=31.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 470 CHQNVKLAEHAFKHLTETDPLN------DGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
...++++|++++++.+.+--.+ ...|-.++++|.+..+++||...+.+
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 4456778888888877633221 23455677778888888877766544
No 316
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.95 E-value=1.4e+02 Score=33.90 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=94.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048812 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189 (645)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (645)
+|.-+.+.|.++-|+...+.-..+=.+-..||+++.|.+.-..+. |...|..|.....++|+.+-|.-.|++.+.-
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf-- 701 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKNF-- 701 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--
Confidence 344444555555555544433222255668999999999877775 4567999999999999999999999887653
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHH
Q 048812 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269 (645)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~ 269 (645)
+..+| .|.-.|+.++-.++...+...+ |... .-...+ -.|++++=.+++.. ....+ ..|-+
T Consensus 702 --ekLsf-----LYliTgn~eKL~Km~~iae~r~---D~~~-~~qnal--Yl~dv~ervkIl~n--~g~~~-laylt--- 762 (1202)
T KOG0292|consen 702 --EKLSF-----LYLITGNLEKLSKMMKIAEIRN---DATG-QFQNAL--YLGDVKERVKILEN--GGQLP-LAYLT--- 762 (1202)
T ss_pred --hheeE-----EEEEeCCHHHHHHHHHHHHhhh---hhHH-HHHHHH--HhccHHHHHHHHHh--cCccc-HHHHH---
Confidence 22222 3445677776665544443222 2111 111122 25888888888876 32222 22221
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 048812 270 GYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~ 288 (645)
-..+|.-++|.++.++..
T Consensus 763 -a~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 763 -AAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred -HhhcCcHHHHHHHHHhhc
Confidence 124677788888887774
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.04 E-value=3.5 Score=23.63 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHH
Q 048812 493 GAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 493 ~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
.....|..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345567777777777777776654
No 318
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.87 E-value=21 Score=28.26 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 372 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
-++.+-++.+....+.|+.....+.|.||.+.+++.-|.++|+..+.+.|. +...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 355555666666778899999999999999999999999999877744332 4456666653
No 319
>PRK10941 hypothetical protein; Provisional
Probab=75.51 E-value=25 Score=34.23 Aligned_cols=62 Identities=18% Similarity=0.023 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+---+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45667777899999999999999999999999877778888899999999999877776553
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.45 E-value=19 Score=28.83 Aligned_cols=60 Identities=13% Similarity=0.069 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 373 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4445555566667889999999999999999999999999988886544 33337777764
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.44 E-value=1.5e+02 Score=33.48 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcc-cHHHHHHHHHHcCChhHHHHHHHHHhhcC---
Q 048812 59 RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK-IWNSIIENQLINGYPQEVFAIYLYLVTRT--- 134 (645)
Q Consensus 59 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 134 (645)
..++.+.+.|+. +...-+.|++.|.+.++.+.-.+..+........ -....+..+.+.+..++|.-+=.+.....
T Consensus 418 ~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl 496 (933)
T KOG2114|consen 418 SYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVL 496 (933)
T ss_pred HHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHH
Confidence 344455677754 5567788999999999999988888777622211 24556666667777777665554443311
Q ss_pred -chhhccCChHHHHHHHccCCC
Q 048812 135 -VLLNKCGKLKEVCQLFDKLPN 155 (645)
Q Consensus 135 -~~~~~~g~~~~A~~~f~~m~~ 155 (645)
.++-..+++++|.+.+..+|-
T Consensus 497 ~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 497 DILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHhcCHHHHHHHHhcCCH
Confidence 455567888888888888874
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.96 E-value=5.9 Score=22.80 Aligned_cols=31 Identities=19% Similarity=0.045 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
+|..+...+...|+++.|...+++.++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555666667777777777776666553
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.78 E-value=17 Score=33.27 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=52.4
Q ss_pred HHHcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCchhHHHHHHHHHHcCCch
Q 048812 436 LGRAGHLEESANFITSMPIPP--DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP----LNDGAHVLLANIYAKAGRLD 509 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m~~~p--d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p----~~~~~y~~l~~~~~~~g~~~ 509 (645)
+.+.|+ ++|.+.|-.+.-.| +....-.-+..|-...|.+++..++-+++++.+ -|+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 445555 44566665553222 333444445555567899999999999998542 36788999999999999998
Q ss_pred HHH
Q 048812 510 DMS 512 (645)
Q Consensus 510 ~a~ 512 (645)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 324
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.55 E-value=69 Score=29.27 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH---
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI--ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC--- 431 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~--- 431 (645)
.|..++.... .+.+ +......++....-+....++. .+...+...+++++|...++.... .|.-+.+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~ 129 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHH
Confidence 3555555443 3333 5555566666542222222332 233467788999999888876662 344344444
Q ss_pred --HHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 432 --MVDLLGRAGHLEESANFITSMPIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 432 --li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
|.......|.+|+|++.++...-+. .......-...+...|+-++|+..|++.++.++++
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 4456778899999999998763211 12222333445888899999999999999987544
No 325
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=74.38 E-value=34 Score=28.04 Aligned_cols=41 Identities=24% Similarity=0.456 Sum_probs=33.2
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048812 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186 (645)
Q Consensus 141 g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 186 (645)
-++++.++.+.+ ..-|+.|+.-|...|..++|++++.+...
T Consensus 27 C~~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 27 CDLEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 356666666633 34699999999999999999999999877
No 326
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.37 E-value=8.7 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.065 Sum_probs=24.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
+.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 455788999999999999999999999854
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.99 E-value=59 Score=34.96 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=90.7
Q ss_pred cHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV-TFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 339 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
+++.|..++..++. ..-+.++.-+.+.|..++|+++ .||.. -|-. ..+.|+++.|.++..+..
T Consensus 601 d~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~e~~ 664 (794)
T KOG0276|consen 601 DLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAVEAN 664 (794)
T ss_pred cccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHHhhc
Confidence 44455555444442 2344566666677777777654 33322 2222 235677777777654432
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+.+..| .
T Consensus 665 -------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-----~ 726 (794)
T KOG0276|consen 665 -------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-----L 726 (794)
T ss_pred -------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc-----h
Confidence 45667888888888888888888887653 25566667777777776666666666655554 2
Q ss_pred HHHHHHHcCCchHHHHHHHHH
Q 048812 498 LANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m 518 (645)
-..+|...|+++++.+++..-
T Consensus 727 AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 234567788998888887543
No 328
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.13 E-value=14 Score=36.36 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=24.5
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhcCCChHHHHHHH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLH 216 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (645)
|.++|.+++|++.|..-... .| |.+++..-..+|.+...+..|+.-.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 55555666666665554432 33 5555555555555555555444433
No 329
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.89 E-value=44 Score=32.57 Aligned_cols=106 Identities=9% Similarity=0.105 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc-c-CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 048812 368 AGHAQKAIDLFLEMEE-TGTKPDQVTFIALLSACSH-G-GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~-~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 444 (645)
+....+|+.+|+.... ..+--|..+...+++.... . .....-.++.+-+...++-.++..+..+.++.++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345567777763221 2244455555555554443 1 12222333444444444555555555666666666666666
Q ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHhcCC
Q 048812 445 SANFITSMP----IPPDVSIWSSLLRACRCHQN 473 (645)
Q Consensus 445 A~~~~~~m~----~~pd~~~~~~ll~a~~~~g~ 473 (645)
-.++++... ...|...|..+|..-...||
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD 253 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGD 253 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCC
Confidence 665555431 11234444444444444444
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.87 E-value=8.1 Score=38.05 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=74.3
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh
Q 048812 398 SACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQNV 474 (645)
Q Consensus 398 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~ 474 (645)
+-|.+.|.+++|+..+.... .+.| +..+|..-..+|.+..++..|+.=-... .+. .-...|.--+.|-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 35889999999999998766 3567 7788888888899999988777544332 111 1123444444455556789
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHH
Q 048812 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 514 (645)
++|.+-++.+++++|.+-. |-..|++.....++.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 9999999999999998633 34445555545444433
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.81 E-value=53 Score=33.64 Aligned_cols=95 Identities=12% Similarity=0.163 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC----------CC-----------------CC-CHHHHHHH---HHHHHhcCCh
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM----------PI-----------------PP-DVSIWSSL---LRACRCHQNV 474 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~-----------------~p-d~~~~~~l---l~a~~~~g~~ 474 (645)
+.++-.+-+.+.+.|+.+.|.+++++. .+ .+ |...|.+| +..+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 445555555666666666666665543 01 11 44455554 4457889999
Q ss_pred HHHHHHHHHHHhcCCC-CchhHHHHHHHHH-HcCCchHHHHHHHHHHh
Q 048812 475 KLAEHAFKHLTETDPL-NDGAHVLLANIYA-KAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~-~~~~y~~l~~~~~-~~g~~~~a~~~~~~m~~ 520 (645)
..|.++.+-++.++|. ||-.-...++.|+ ++++++--.++.+....
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999999998 7777778888886 77888878888776544
No 332
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=70.78 E-value=1.6e+02 Score=31.82 Aligned_cols=186 Identities=13% Similarity=0.108 Sum_probs=116.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+..+|+.-+.--...|+.+.+.-+|+...-|= +.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-----------------------A~----------------------- 329 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-----------------------AL----------------------- 329 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-----------------------hh-----------------------
Confidence 56788888888888888888888887754321 10
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
=...|--.+.-.-..|+.+-|-.++..-.+--++-...+-..-..-+-..|+.+.|..+++.+.++
T Consensus 330 --------------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 330 --------------YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred --------------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 011233333333333777777666655554433322222222222345668899999999888865
Q ss_pred cCCCCC-hHHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHhcCC
Q 048812 420 YNIKPK-MQHYGCMVDLLGRAGHLEESA---NFITSM-PIPPDVSIWSSLLRA-----CRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 420 ~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~pd~~~~~~ll~a-----~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+ |+ +..--.-+....+.|..+.+. +++... +.+-+..+...+.-- +...++.+.|..++.++.+..|
T Consensus 396 ~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 396 Y---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILP 472 (577)
T ss_pred C---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC
Confidence 3 55 333334456677888888887 444443 222233333322222 4556899999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCc
Q 048812 490 LNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 490 ~~~~~y~~l~~~~~~~g~~ 508 (645)
++...|..+++.....+..
T Consensus 473 ~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 473 DCKVLYLELIRFELIQPSG 491 (577)
T ss_pred ccHHHHHHHHHHHHhCCcc
Confidence 9999999999988776643
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.64 E-value=64 Score=35.35 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=92.8
Q ss_pred HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 365 YAMAGHAQKAIDLFLEMEE-------TGTKPDQVTFIALLSACSHGG-----LVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~-------~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
+....+.+.|+.+|+.+.+ .| +......+-.+|.+.. +.+.|..++.... +.| .|+....-..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-~~g-~~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-ELG-NPDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-hcC-CchHHHHHHH
Confidence 5566788888888888876 44 2334555566666543 5667888888777 334 3444333333
Q ss_pred HHHHHH-cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCchhHHHHHHH--HHHc
Q 048812 433 VDLLGR-AGHLEESANFITSMP--IPPDVSIWSSLLRACR--CHQNVKLAEHAFKHLTETDPLNDGAHVLLANI--YAKA 505 (645)
Q Consensus 433 i~~~~~-~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~--~~~~ 505 (645)
+...+. ..+...|.++|.... -.++...+.+++-... ...+.+.|..+++++-+.++. .+...+... +..
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHcc-
Confidence 333333 245778888888773 2233333333333322 345889999999999998832 333333333 333
Q ss_pred CCchHHHHHHHHHHhCCCc
Q 048812 506 GRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 506 g~~~~a~~~~~~m~~~~~~ 524 (645)
++++.+.-.+..+.+.|.+
T Consensus 411 ~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYE 429 (552)
T ss_pred ccccHHHHHHHHHHHhhhh
Confidence 8888888888888877754
No 334
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.10 E-value=56 Score=26.52 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=42.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048812 110 IIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG 188 (645)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g 188 (645)
+...+.+.+..+++..+.+-+. +.+.|++++|...=.....||...|-+|-. .+.|..+++..-+.++-.+|
T Consensus 28 Ia~wL~~~~~~~E~v~lIr~~s-----LmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 28 IADWLEQEGEMEEVVALIRLSS-----LMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHH-----HHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHhCCcHHHHHHHHHHHH-----HHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3334444444455554444432 245677888855555556789999977754 47788888888888777665
No 335
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.97 E-value=81 Score=27.35 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=42.8
Q ss_pred CCcchHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcC
Q 048812 156 RDVISWNTMISCYTSMGM-YREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (645)
.+-.+|++++.+.++..- ---+..+|..|++.+.+++..-|..++++|.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 566789999999977666 456788999999988999999999999998765
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.89 E-value=11 Score=22.85 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 493 GAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 493 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 337
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=66.90 E-value=1.1e+02 Score=28.51 Aligned_cols=63 Identities=10% Similarity=-0.015 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHH--HHhcCCChHHHHHHHHHHHHhC
Q 048812 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS--ARTKLRDLEMGKNLHLFLEEST 223 (645)
Q Consensus 158 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g 223 (645)
...||-|.--+...|+++.|.+.|+...+....- -|..+=+ ++---|++..|.+-+...-+.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---hHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 4578888888899999999999999988764221 2222222 2334577777776665554443
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.57 E-value=18 Score=33.40 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
.+.-+..+.+.+++++|+...+.- ..+| |...-..|+.-++..|++++|..-++-.-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566777888999998877653 5555 556677788889999999999999988888888754
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.57 E-value=20 Score=35.08 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=46.2
Q ss_pred cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 048812 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST 223 (645)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 223 (645)
.-++++++.++..=++-|+-||.+|+..+|..+.+.+++..|.++...|+...
T Consensus 113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34678999999988899999999999999999999999999998888877664
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.45 E-value=81 Score=32.91 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=29.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 377 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
+|..++...-.|+.+-..+.| ..+.|.++.+.+.+..... -+.....+..+++....+.|++++|..+-..|
T Consensus 312 ~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 312 LFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 333333333334444333333 2344555555444433321 12223344444444444444444444444443
No 341
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=66.41 E-value=91 Score=32.84 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 430 (645)
|..-|...+.-|-+.+.+.+...+|.+|...++..|+..+|.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~a 145 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYA 145 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhh
Confidence 555555555555555555555555555555555555544443
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.09 E-value=1e+02 Score=27.70 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=85.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHHH--HHHHHHcC
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQ-VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ-HYGCM--VDLLGRAG 440 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 440 (645)
+++.+..++|+.-|.++.+.|...-. ..-..........|+...|...|+++..+.. .|.+. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence 46788999999999999988755322 1222333456788999999999999886433 23321 11112 23466789
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 441 HLEESANFITSMPIPPD---VSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 441 ~~~~A~~~~~~m~~~pd---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
.+++...-.+.+..+.+ ...-.+|.-+-.+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 99999988888743222 33556777778899999999999999987
No 343
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.12 E-value=1.7e+02 Score=30.05 Aligned_cols=157 Identities=14% Similarity=0.186 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh--------cCCCCCh
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETG--TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV--------YNIKPKM 426 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--------~~~~p~~ 426 (645)
.+.-+...|...|+.+.|++.|.+.+..= -+-....+..+|..-.-.|++.....+..+..+. ..+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 35567778888999999999998855421 1111234444554444556665554444444321 1234556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChHH-----HHHHHHHHHhcCCCCc
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSMP---------IPPDVSIWSSLLRACRCHQNVKL-----AEHAFKHLTETDPLND 492 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~pd~~~~~~ll~a~~~~g~~~~-----a~~~~~~~~~~~p~~~ 492 (645)
..+..|.....+ ++..|.+.|-..+ +.|..++-...+.|.+--+.-+. .-..|+..+++.|.
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq-- 307 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ-- 307 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH--
Confidence 777777777666 6777766654442 33433333344445444433222 23456777777773
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 493 GAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 493 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
....|..-|. +++....+++++++.
T Consensus 308 -lr~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 308 -LREILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred -HHHHHHHHhh--hhHHHHHHHHHHhcc
Confidence 4444544443 567777777777754
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=64.53 E-value=9.1 Score=22.86 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 494 AHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 494 ~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998763
No 345
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.89 E-value=1.6e+02 Score=30.53 Aligned_cols=122 Identities=11% Similarity=-0.035 Sum_probs=66.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--hccCcHHHHHHHHHHhHHhcCC-CCChHHHHHHHHHHHH
Q 048812 364 AYAMAGHAQKAIDLFLEMEETGTKPDQV--TFIALLSAC--SHGGLVDEGYDFLSKKSRVYNI-KPKMQHYGCMVDLLGR 438 (645)
Q Consensus 364 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~ 438 (645)
.+...+++..|.++|+++... ++++.. .+..+..+| ...-+.++|.+.++........ .-....+..++...-.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Confidence 344789999999999999987 666554 333444444 3567788999999877742111 0112333333333322
Q ss_pred cCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 048812 439 AGHLEESANFITSMPIPP-DVSIWSSLLRACR--CHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 439 ~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~--~~g~~~~a~~~~~~~~~ 486 (645)
...+.........-+.++ -......+.+|-+ ..|+++.|...+-++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 222222222221111111 1233444555544 36888888877777766
No 346
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.87 E-value=1.3e+02 Score=28.38 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=33.7
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHhcCCCC
Q 048812 430 GCMVDLLGRA-GHLEESANFITSM-----PIPPDVSIWSSLLRA---CRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 430 ~~li~~~~~~-g~~~~A~~~~~~m-----~~~pd~~~~~~ll~a---~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
-.+.+.|-.. .+++.|...++.. +-+.+...-..++.+ -...+++.+|+.+|+++-...-++
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344444433 4555555555554 112233333334433 345678899999999987744444
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.45 E-value=53 Score=34.15 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=66.0
Q ss_pred HHHHHHhhcCc----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 342 LAYDLFSEISE----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 342 ~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
...++|+.+.. |+.+..-+.| +...|+++.+.+.+...... +.....|...++...-..|++++|...-..|.
T Consensus 308 as~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 308 ASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 33445544432 4444333333 44567888888777665543 44456677777777777888888877766666
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 048812 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRA 467 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a 467 (645)
. ..++ +.++...-...--..|-++++.-.+++. . .+|...-|-..++.
T Consensus 385 ~-~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 385 S-NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred c-cccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 2 2222 2222221112223346677777777665 2 23444455555554
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.16 E-value=16 Score=27.68 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=34.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHH---HHHHHHHHcCCchHHHHH
Q 048812 470 CHQNVKLAEHAFKHLTETDPLNDGAHV---LLANIYAKAGRLDDMSRI 514 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~p~~~~~y~---~l~~~~~~~g~~~~a~~~ 514 (645)
...+.+.|+..++++++..++.+.-+. .|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999887766655444 577788888888887765
No 349
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=62.04 E-value=1.2e+02 Score=27.14 Aligned_cols=32 Identities=6% Similarity=0.081 Sum_probs=15.4
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhcCCChH
Q 048812 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210 (645)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (645)
+.++.+.+.|++|+...+..++..+.+.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444444455555555555555555555443
No 350
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.04 E-value=2.2e+02 Score=30.21 Aligned_cols=102 Identities=9% Similarity=0.104 Sum_probs=52.5
Q ss_pred CCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH---HHcCCHHHHHHHHHhC--CCCCCHHH
Q 048812 387 KPDQVTFI-ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL---GRAGHLEESANFITSM--PIPPDVSI 460 (645)
Q Consensus 387 ~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~pd~~~ 460 (645)
.|+..|+. .++.-+...|-..+|...+..+... -.|+...|.-||..= ..+| +.-+.++++.| .+-.|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 44444442 3444445555555555555555521 122445555555432 2223 44455555554 12256666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-cCCCC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTE-TDPLN 491 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~~ 491 (645)
|.-.+.--..+|..+.+-.++.++.+ ++|..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 66666666667777777666666655 55543
No 351
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.67 E-value=16 Score=21.47 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788899999999888887777766554
No 352
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.42 E-value=91 Score=30.84 Aligned_cols=49 Identities=6% Similarity=0.098 Sum_probs=24.3
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048812 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449 (645)
Q Consensus 401 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 449 (645)
.+.|+..+|.+.|+.+.++..+..-..+...|+.++....-+.+...++
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665554333222333444555555554444444443
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.26 E-value=51 Score=29.67 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHhcc
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEET-----GTKPD-QVTFIALLSACSHG 403 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~pd-~~t~~~ll~a~~~~ 403 (645)
.-|...+.-+++.....++.+++++.+.. .+.|+ ..++..+-.++...
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 44555555555555545554444443321 24565 35666666555543
No 354
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.16 E-value=1.6e+02 Score=27.94 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=58.0
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048812 358 WTSVIAAYA--MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435 (645)
Q Consensus 358 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 435 (645)
|...+.|+- .++++++|++++-.- .+.|+.. .-++.++...|+.+.|..+++...- .-.+...-..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 445555554 356677777766221 1222221 1366666667888888887765431 11122333333333
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048812 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g 472 (645)
..+|.+.||..+.+..+-+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556788888887777643222346666666665443
No 355
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.85 E-value=90 Score=25.07 Aligned_cols=80 Identities=9% Similarity=0.062 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
-++|.-|-+.+...+ .....+--.-+..+...|++++|..+.+. ...||...|-+|-.. +.|..+++..-+.+|.
T Consensus 21 HqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~--~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNK--LCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCC--CCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 345555555554443 11233333334567788999999999888 678899999777543 5666666666666665
Q ss_pred cCCch
Q 048812 289 ERNLI 293 (645)
Q Consensus 289 ~~~~~ 293 (645)
..+..
T Consensus 96 ~sg~p 100 (115)
T TIGR02508 96 ASGDP 100 (115)
T ss_pred hCCCH
Confidence 44443
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.26 E-value=3e+02 Score=30.92 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C---CcccHHHHHHHHHHcCChhHHHHHHHHHhh
Q 048812 80 FEFLVFTGDLGYAQQIIRQGDE--P---EIKIWNSIIENQLINGYPQEVFAIYLYLVT 132 (645)
Q Consensus 80 l~~~~~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 132 (645)
++-+.+.+.+++|..+-..-.. + -...|-..|..+.-.|++++|-...-.|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 4456677888888887766442 2 223577888888888888888777777754
No 357
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.68 E-value=1.6e+02 Score=27.19 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=23.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
.+|.+...++.|+.-++++++.+|....+--
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 3566777889999999999999987654433
No 358
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.53 E-value=74 Score=26.87 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=36.1
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 476 LAEHAFKHLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 476 ~a~~~~~~~~~--~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
.+..+|+.|.. ++..-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88999999987 5677788899999999999999999999865
No 359
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.26 E-value=1.7e+02 Score=28.75 Aligned_cols=124 Identities=13% Similarity=0.200 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh-CCCCCChhhHHHHHHHHhc-CC-ChHHHHHHHHHHHHh-CCCCchhHHHHHHH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGA-EGVSPDEVTMVSLISARTK-LR-DLEMGKNLHLFLEES-TMKISGSLLNYLVD 236 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~ 236 (645)
|..|+. ++....+|+.+|+..-- ..+--|..+...+++.... .+ .+..-.++...+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666553 34556788888884322 2355577777777777665 22 333333444444432 34677888888999
Q ss_pred HHHHcCCHHHHHHHHcccCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 048812 237 MYFKCGKIGEAQKLLGRYEI---DEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (645)
.+++.+++..-.++++.-.. +..|...|..+|..-...|+..-..++.++-
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 99999999999998886211 2348889999999999999988888777654
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.67 E-value=1.4e+02 Score=29.09 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=59.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH-
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEE--TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR- 438 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 438 (645)
|.+++..+++.+++...-+--+ +.++|...-.- |-.|++.+......++-..-.+. .-+-+..-|..++.+|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 7899999999999876544432 22455444333 33478889888888877766642 222234458888777654
Q ss_pred ----cCCHHHHHHHHHhC
Q 048812 439 ----AGHLEESANFITSM 452 (645)
Q Consensus 439 ----~g~~~~A~~~~~~m 452 (645)
.|.+++|++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 59999999998543
No 361
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.58 E-value=1.2e+02 Score=24.77 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
...++|..|.+.+...+ .....+--.-+..+.+.|++++|...=.. ...||...|-+|-. .+.|..+++...+.+
T Consensus 20 HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~--~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALLLPQC--HCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHHHHTT--S--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHhccc--CCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34566777777776665 23334444445667778888888443333 56778888866643 467777788777777
Q ss_pred cccCCchh
Q 048812 287 MVERNLIS 294 (645)
Q Consensus 287 m~~~~~~t 294 (645)
+...+...
T Consensus 95 la~~g~~~ 102 (116)
T PF09477_consen 95 LASSGSPE 102 (116)
T ss_dssp HCT-SSHH
T ss_pred HHhCCCHH
Confidence 76544433
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.27 E-value=35 Score=25.94 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=20.9
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESAN 447 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 447 (645)
+...-++|+..|....+...-.|+ -.+..+|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554432222222 2344555555555555555544
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.24 E-value=2.2e+02 Score=27.90 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHc
Q 048812 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252 (645)
Q Consensus 210 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 252 (645)
.+|+++|..++.+. .-..+-+-++.++...-+..+|...|.
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHH
Confidence 46777777776653 122333445555555555555544443
No 364
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.87 E-value=31 Score=27.12 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=19.9
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 481 ~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+++.++.+|+|...-..+...+...|++++|.+.+-.+.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555544433
No 365
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.75 E-value=9.2 Score=37.80 Aligned_cols=85 Identities=9% Similarity=0.088 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 440 GHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 440 g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
|.+++|.+.|... +..|. ...|.-=.+++.+.+....|++-+...++++|+....|-.-..+....|+|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 3444555444443 22232 223333344455666666666666666666666666665555555566666666666666
Q ss_pred HHhCCCc
Q 048812 518 LRDMGLK 524 (645)
Q Consensus 518 m~~~~~~ 524 (645)
..+.+..
T Consensus 208 a~kld~d 214 (377)
T KOG1308|consen 208 ACKLDYD 214 (377)
T ss_pred HHhcccc
Confidence 6665554
No 366
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.29 E-value=2.1e+02 Score=27.09 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=36.3
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCCHHHHH---HHHHH--HHhc-CChHHHHHHHHHHHhcCCCCchh
Q 048812 435 LLGRAGHLEESANFITSM---PIPPDVSIWS---SLLRA--CRCH-QNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m---~~~pd~~~~~---~ll~a--~~~~-g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.-+..+++.+|.++|++. .+..+..-|. -++.+ |.-. .|.-.+...+++..+++|.-..+
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 345667788888887776 2222333332 23333 3333 67777888888888999864443
No 367
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.90 E-value=67 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccc
Q 048812 262 VLWTTLVSGYVKSNERDEARRLFDEMVE 289 (645)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 289 (645)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3589999999999999999999998865
No 368
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.82 E-value=4.6e+02 Score=30.85 Aligned_cols=247 Identities=12% Similarity=0.030 Sum_probs=121.9
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHH-HHHHHHcccCCCCCChhhHHHHH
Q 048812 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG-EAQKLLGRYEIDEVDVVLWTTLV 268 (645)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~m~~~~~~~~~~~~li 268 (645)
.||...-...+..+.+.+..+ +...+..+++ .++..+-...+.++.+.+... ....+... ...+|...-...+
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~--L~~~d~~VR~~A~ 705 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDH--LGSPDPVVRAAAL 705 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHH--hcCCCHHHHHHHH
Confidence 457777777777777777644 3333444442 456666666666666553321 11122222 2234555555555
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 048812 269 SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFS 348 (645)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~ 348 (645)
.++...+..+ ...+...+..+|...-...+.++.+. + .. ..+..
T Consensus 706 ~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~------------~--------------------~~---~~l~~ 749 (897)
T PRK13800 706 DVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSV------------D--------------------DV---ESVAG 749 (897)
T ss_pred HHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcc------------c--------------------Cc---HHHHH
Confidence 6665543221 22333444444443222222111111 0 00 01112
Q ss_pred hcCcCChhHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH
Q 048812 349 EISEKNVYLWTSVIAAYAMAGHAQK-AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427 (645)
Q Consensus 349 ~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 427 (645)
...+++...-...+.++...+..+. +...+..+.. .+|...-...+.++...|..+.+...+..+.+ .++..
T Consensus 750 ~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~ 822 (897)
T PRK13800 750 AATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQ 822 (897)
T ss_pred HhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChH
Confidence 2234555555566666666665432 3444444443 35666666677777777765444333333332 34555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
+-...+.++++.+.- ++...+..+-..|+..+-...+.++...+....+...+..+++
T Consensus 823 VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 823 VRQGAARALAGAAAD-VAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHhcccc-chHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555666667766653 3444443333346666666666666665434455555555554
No 369
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.52 E-value=2.2e+02 Score=30.58 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 263 LWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.-..++.-|.+.++.++|..++..|.
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 34567788899999999999888885
No 370
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.13 E-value=59 Score=29.82 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 454 ~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
..|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345666666666666666666666666666666666
No 371
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.86 E-value=16 Score=30.87 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=25.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 400 (645)
..|.-.+|..+|++|++.|.+|| .|+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34667789999999999999998 466666554
No 372
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.84 E-value=42 Score=31.62 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
.+.+.++++.+.+--.+.+++.|+.......|.........+++|+..+.+.
T Consensus 53 chlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 53 CHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555544
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.76 E-value=52 Score=30.19 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=29.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
...+.+......+.+.+.....|+..+|..++.++...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444433345666666666666666677777766666665
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.45 E-value=32 Score=22.84 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=9.0
Q ss_pred HHHhcCCChHHHHHHHHHHH
Q 048812 201 SARTKLRDLEMGKNLHLFLE 220 (645)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~ 220 (645)
.+|...|+.+.|++++++++
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 375
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.63 E-value=69 Score=36.09 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhCCCCCh--h--hhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhh
Q 048812 57 FERIHSHLITTNLMRDP--Q--ISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVT 132 (645)
Q Consensus 57 ~~~~~~~~~~~g~~~~~--~--~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 132 (645)
|+.+.+++++.|.+--. + --..-......||+++.|.+.-.++..+| .|..|.....++|+.+-|...|++...
T Consensus 623 GqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d--~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 623 GQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKD--VWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred cHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHH--HHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 56788899999864210 0 01122334568999999988877766554 699999999999999999999999887
Q ss_pred cC---chhhccCChHHHHHHHccCCCC
Q 048812 133 RT---VLLNKCGKLKEVCQLFDKLPNR 156 (645)
Q Consensus 133 ~~---~~~~~~g~~~~A~~~f~~m~~~ 156 (645)
.+ -+|.-.|+.++-.++-+....+
T Consensus 701 fekLsfLYliTgn~eKL~Km~~iae~r 727 (1202)
T KOG0292|consen 701 FEKLSFLYLITGNLEKLSKMMKIAEIR 727 (1202)
T ss_pred hhheeEEEEEeCCHHHHHHHHHHHHhh
Confidence 66 6777788888877776655433
No 376
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.50 E-value=2.1e+02 Score=26.17 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=56.9
Q ss_pred HHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--
Q 048812 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM-- 224 (645)
Q Consensus 147 ~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-- 224 (645)
..+.+...++-.+.|-.....-++.-+.+++-+.|-- ..=.+++-.|-+.-++.+++.+++.+-+..+
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444445556666666666666555554433311 1123455566677777888877777755422
Q ss_pred ------------CCchhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 225 ------------KISGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 225 ------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
.+--.+.|.....+.++|.+|.|..++++
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 23345566667777777777777777765
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=48.51 E-value=42 Score=22.28 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=17.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777777777777777777543
No 378
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.26 E-value=2e+02 Score=27.16 Aligned_cols=114 Identities=15% Similarity=0.204 Sum_probs=67.4
Q ss_pred CcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 338 ~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
++++.|.+.+-...-. .....-++.++...|+.+.|+.+++.+.-....+ .....++.+ ...+.+.+|+.+-+...
T Consensus 92 ~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 92 GDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 3677777776433221 1112248888888999999999998765332222 223333334 44588999998776554
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH
Q 048812 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVS 459 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~ 459 (645)
. .-....+..++..+.....-....+.+-.+|+.++..
T Consensus 168 ~----~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 168 D----ELRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred h----hhhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 2 1124567777777765543344455555667665443
No 379
>PRK09687 putative lyase; Provisional
Probab=47.09 E-value=2.9e+02 Score=27.14 Aligned_cols=125 Identities=9% Similarity=-0.072 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG-LVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
+..+--..+.++++.|+ .+|+..+-.+.+ .+|...-...+.++.+.+ .-..+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 44444455566666665 456666666654 345455555555555543 13345555555552 4566677777
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
+.++++.|...-.-.+++.+.. ++ .....+.++...|+. +|...+.++.+..|+
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHHHHccCChhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 7778887775433344444442 33 234566777777774 677777777776663
No 380
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.98 E-value=2.4e+02 Score=26.84 Aligned_cols=28 Identities=18% Similarity=0.054 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 048812 453 PIPPDVSIWSSLLRACRCHQNVKLAEHA 480 (645)
Q Consensus 453 ~~~pd~~~~~~ll~a~~~~g~~~~a~~~ 480 (645)
++.|-..++..|..+=...=++.+..++
T Consensus 112 ~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 112 PFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred CCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 3444445555555554333344444443
No 381
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.91 E-value=1.3e+02 Score=29.82 Aligned_cols=103 Identities=9% Similarity=0.050 Sum_probs=56.5
Q ss_pred HhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 048812 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG---TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423 (645)
Q Consensus 347 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 423 (645)
|..-....+.+-...+..-.+..+++.++.++-+++... ..|+... ..++.-|. .-+.++++.++..=+ .||+-
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npI-qYGiF 132 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPI-QYGIF 132 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcc-hhccc
Confidence 333333344455555555555666777777666665321 2222211 12222222 234556666666555 46777
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 424 PKMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 424 p~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
||..+++.++|.+.+.+++.+|..+...|
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 77777777777777777777777666554
No 382
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.55 E-value=1.5e+02 Score=28.30 Aligned_cols=56 Identities=11% Similarity=-0.091 Sum_probs=44.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
-.++...|++-++++--.+++..+|.|..+|..-+.+.+..=+.++|..=+....+
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 33445678889999999999999999999998888887777777778777777655
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=44.52 E-value=1.1e+02 Score=25.69 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=34.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 451 ~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
.+.+-|++.+..+-++||++.+|+..|.++|+-+...-+.....|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 345668888888889999999999999999988877444333344433
No 384
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.42 E-value=2.6e+02 Score=25.75 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=63.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSS-----LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~-----ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
...+..+|++++|+.-++..--.|....+.+ |.+.....|.++.|...++...+-.- .+.....-.+++...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc
Confidence 4557889999999999886533344444444 34446778889999888776544221 11334567889999999
Q ss_pred chHHHHHHHHHHhCC
Q 048812 508 LDDMSRIRMKLRDMG 522 (645)
Q Consensus 508 ~~~a~~~~~~m~~~~ 522 (645)
-++|+.-+++..+.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999987755
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.14 E-value=2.2e+02 Score=24.80 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=38.8
Q ss_pred CChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048812 353 KNVYLWTSVIAAYAMAGH-AQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 403 (645)
.+-.+|++++.+.++..- --.+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 455678888888766555 345677888888878888888888888887765
No 386
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.94 E-value=45 Score=32.68 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 398 (645)
.-||..|..-.+.||.++|+.+++|.++.|+.--..||..-++
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 3478999999999999999999999999998866667665443
No 387
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.87 E-value=3.7e+02 Score=28.00 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCChh--hhhhHHHHHHhcCChHHHHHHHhhCCCCCcc---cHHHHHHHHHHcCChhHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQ--ISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK---IWNSIIENQLINGYPQEVFAI 126 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~ 126 (645)
|+++ +...+++.|..++.. ...+.+...+..|+.+-+.-+++....++.. .++.+ ...+..
T Consensus 13 g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L-~~A~~~--------- 78 (413)
T PHA02875 13 GELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESEL-HDAVEE--------- 78 (413)
T ss_pred CCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHH-HHHHHC---------
Confidence 6654 455666778776653 3566677788899999888888776544432 23333 333344
Q ss_pred HHHHhhcCchhhccCChHHHHHHHccCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhh--HHHHH
Q 048812 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPNR----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT--MVSLI 200 (645)
Q Consensus 127 ~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~----~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll 200 (645)
|+.+.+..+++.-... +..-++. +...+..|+. ++++.+.+.|..|+... -.+.+
T Consensus 79 --------------g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpL 139 (413)
T PHA02875 79 --------------GDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPL 139 (413)
T ss_pred --------------CCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHH
Confidence 4444444444432211 1111223 3333455554 45556666776665432 12334
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHcCCHHHHHHHHcccCCCCCChh---hHHHHHHHHHhcC
Q 048812 201 SARTKLRDLEMGKNLHLFLEESTMKISGS--LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV---LWTTLVSGYVKSN 275 (645)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~---~~~~li~~~~~~g 275 (645)
...+..|+.+.++. +++.|..++.. ...+.+...+..|+.+-+.-+++. ...++.. -.++.+..-+..|
T Consensus 140 h~A~~~~~~~~v~~----Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~--ga~~n~~~~~~~~t~l~~A~~~~ 213 (413)
T PHA02875 140 HLAVMMGDIKGIEL----LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS--GANIDYFGKNGCVAALCYAIENN 213 (413)
T ss_pred HHHHHcCCHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCcCCCCCCchHHHHHHHcC
Confidence 44445677654443 44555433221 122334455667888877777765 4444322 1234555455677
Q ss_pred CHHHHHHHHHhc
Q 048812 276 ERDEARRLFDEM 287 (645)
Q Consensus 276 ~~~~A~~~~~~m 287 (645)
+.+-+.-+++.=
T Consensus 214 ~~~iv~~Ll~~g 225 (413)
T PHA02875 214 KIDIVRLFIKRG 225 (413)
T ss_pred CHHHHHHHHHCC
Confidence 776666555543
No 388
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.35 E-value=3.5e+02 Score=26.95 Aligned_cols=99 Identities=15% Similarity=0.041 Sum_probs=64.6
Q ss_pred cCcHHHHHHHHHHhHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048812 403 GGLVDEGYDFLSKKSRVYN---IKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~ 479 (645)
.+-.+.|.+.|+....... ...+......+.....+.|..++-..+++.....++......++.+.+...+.+.-.+
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 143 PECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3346778888888875211 1345566677777777888877766666666656788888999999999999999999
Q ss_pred HHHHHHhcC-CCCchhHHHHHHH
Q 048812 480 AFKHLTETD-PLNDGAHVLLANI 501 (645)
Q Consensus 480 ~~~~~~~~~-p~~~~~y~~l~~~ 501 (645)
+++.++.-+ -.+...+..+..+
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHH
T ss_pred HHHHHcCCcccccHHHHHHHHHH
Confidence 999999843 2222344444433
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=42.74 E-value=80 Score=19.84 Aligned_cols=30 Identities=17% Similarity=0.056 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHhcCCC
Q 048812 461 WSSLLRACRCHQNVKLAEHA--FKHLTETDPL 490 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~--~~~~~~~~p~ 490 (645)
|-++.-.+-..|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34455556677777777777 3355555554
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.71 E-value=28 Score=29.51 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=23.9
Q ss_pred cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 048812 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203 (645)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (645)
.|.-..|..+|++|++.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 35566789999999999988875 66666654
No 391
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.66 E-value=4e+02 Score=28.88 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=37.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-HcCCchHHHHHHHHHH
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPL-NDGAHVLLANIYA-KAGRLDDMSRIRMKLR 519 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~-~~~~y~~l~~~~~-~~g~~~~a~~~~~~m~ 519 (645)
..+.+.|-+..|.+.-+-+++++|. ||.....+++.|+ ++.+++=-+++++..+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456677788888888888888876 7777777777775 5566666666666553
No 392
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=42.35 E-value=2.2e+02 Score=27.74 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=48.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC--CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH--
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAE--GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK-- 240 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-- 240 (645)
|.+++..+++.+++...-+--+. .++|...-.. |-.|.+.+....+.++-..-.+..-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 77888888888887765544332 3344333333 33366777777666666555543222233335555555543
Q ss_pred ---cCCHHHHHHHHc
Q 048812 241 ---CGKIGEAQKLLG 252 (645)
Q Consensus 241 ---~g~~~~A~~~~~ 252 (645)
.|.+++|+++..
T Consensus 168 LlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 168 LLPLGHFSEAEELVV 182 (309)
T ss_pred HhccccHHHHHHHHh
Confidence 466666666653
No 393
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=41.99 E-value=76 Score=34.05 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=70.7
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLA 477 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a 477 (645)
-.|+...|...+..... ..|. -.....|.+.+.+.|...+|-.++.+. . ....+.++-++.+++....|++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 45777777777766543 3442 223345666677778778888776553 2 234556788888999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 478 EHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 478 ~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
++.|+.+++++|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999887777665544
No 394
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.99 E-value=1.3e+02 Score=26.09 Aligned_cols=63 Identities=21% Similarity=0.218 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 443 ~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
+.|.++.+-|+ .....-.........|++.-|.++.+.++..+|++...-....++|...|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 56667777774 2223333445567789999999999999999999988888888888766543
No 395
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.93 E-value=3e+02 Score=25.85 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCM 432 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 432 (645)
|.+.-++.+.+.+...+|+...++-.+.. +.|..+-..++..++-.|++++|..-++-..+ +.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 34455677778888888888887776652 23455566677788888888888876665542 4443 5566666
Q ss_pred HHH
Q 048812 433 VDL 435 (645)
Q Consensus 433 i~~ 435 (645)
|+.
T Consensus 79 ir~ 81 (273)
T COG4455 79 IRC 81 (273)
T ss_pred HHH
Confidence 643
No 396
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.81 E-value=2.6e+02 Score=31.26 Aligned_cols=143 Identities=14% Similarity=0.159 Sum_probs=80.0
Q ss_pred HHHHHhhcCCHHHHHHHHH---HHHHhCCCCCh---hhhhhHHHHHHhcCChHHHHHHHhhCCC-C---------Cc-cc
Q 048812 44 VIMVERSCSSIDEFERIHS---HLITTNLMRDP---QISTQVFEFLVFTGDLGYAQQIIRQGDE-P---------EI-KI 106 (645)
Q Consensus 44 ~~~~l~~~~~~~~~~~~~~---~~~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~---------~~-~~ 106 (645)
|.+-++..+++..|.++-+ .|.+.=-.|++ .+...|+-.|-...+++...++.+.+.. | ++ ..
T Consensus 166 flsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~ 245 (1226)
T KOG4279|consen 166 FLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFH 245 (1226)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEE
Confidence 3333444444444444433 33333224444 3445556667777888888888776541 2 21 12
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcC-----chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048812 107 WNSIIENQLINGYPQEVFAIYLYLVTRT-----VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLL 181 (645)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~ 181 (645)
|.-.+.---+-|+-++|+...-.+.+.+ +||+-||++-+ .|- +-+.|...+..+.|++.|
T Consensus 246 YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~Wy 310 (1226)
T KOG4279|consen 246 YAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWY 310 (1226)
T ss_pred eeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhh------hhh---------hccCCcchhhHHHHHHHH
Confidence 3333333334577778888888777754 88888887532 211 123455556667788888
Q ss_pred HHHhhCCCCCChh---hHHHHHHHH
Q 048812 182 SKMGAEGVSPDEV---TMVSLISAR 203 (645)
Q Consensus 182 ~~m~~~g~~p~~~---t~~~ll~~~ 203 (645)
++.-+. .|+.. -+..|+.+-
T Consensus 311 rkaFev--eP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 311 RKAFEV--EPLEYSGINLATLLRAA 333 (1226)
T ss_pred HHHhcc--CchhhccccHHHHHHHh
Confidence 776653 66654 355555543
No 397
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.54 E-value=3.7e+02 Score=28.20 Aligned_cols=45 Identities=20% Similarity=0.085 Sum_probs=29.2
Q ss_pred chHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 048812 159 ISWNTMISCYTS---MGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203 (645)
Q Consensus 159 ~~~n~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (645)
..+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345556666655 478888888888888888776654444444443
No 398
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.52 E-value=49 Score=32.34 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=25.5
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
.+.|+.++|..+|+.++.+.|.++....-+........+.-+|.+++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 44566666666666666666666555554444444444444444444
No 399
>PHA02875 ankyrin repeat protein; Provisional
Probab=41.28 E-value=4.3e+02 Score=27.46 Aligned_cols=166 Identities=13% Similarity=0.068 Sum_probs=84.2
Q ss_pred HHHHHHHHhCCCCChh--hhhhHHHHHHhcCChHHHHHHHhhCCCCC----cccHHHHHHHHHHcCChhHHHHHHHHHhh
Q 048812 59 RIHSHLITTNLMRDPQ--ISTQVFEFLVFTGDLGYAQQIIRQGDEPE----IKIWNSIIENQLINGYPQEVFAIYLYLVT 132 (645)
Q Consensus 59 ~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 132 (645)
.+...+++.|..|+.. ...+.+...++.|+.+.+..+++.....+ ..-++.+.. .+..
T Consensus 49 ~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~-A~~~--------------- 112 (413)
T PHA02875 49 EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHL-ATIL--------------- 112 (413)
T ss_pred HHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHH-HHHh---------------
Confidence 3556677788665532 23455677788999999999988754221 112233332 2333
Q ss_pred cCchhhccCChHHHHHHHccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHhcC
Q 048812 133 RTVLLNKCGKLKEVCQLFDKLPNR---DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE---VTMVSLISARTKL 206 (645)
Q Consensus 133 ~~~~~~~~g~~~~A~~~f~~m~~~---~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~ 206 (645)
|+.+-+..+++.-..+ +..-++.| ...+..|+.+- ++.+.+.|..++. .-.+.+.. .+..
T Consensus 113 --------~~~~iv~~Ll~~gad~~~~~~~g~tpL-h~A~~~~~~~~----v~~Ll~~g~~~~~~d~~g~TpL~~-A~~~ 178 (413)
T PHA02875 113 --------KKLDIMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIKG----IELLIDHKACLDIEDCCGCTPLII-AMAK 178 (413)
T ss_pred --------CCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHhcCCCCCCCCCCCCCHHHH-HHHc
Confidence 4444444444433322 22223333 33445566433 3334445544332 22223332 3334
Q ss_pred CChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHHcCCHHHHHHHHcccCCCCCC
Q 048812 207 RDLEMGKNLHLFLEESTMKISGSL---LNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~m~~~~~~ 260 (645)
|+.+ +...+++.|..++... .++++..-+..|+.+-+.-+++. ...++
T Consensus 179 g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~--gad~n 229 (413)
T PHA02875 179 GDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR--GADCN 229 (413)
T ss_pred CCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC--CcCcc
Confidence 5544 4445566666554322 23455555677787777777765 44443
No 400
>PRK10941 hypothetical protein; Provisional
Probab=41.21 E-value=2.2e+02 Score=27.81 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 430 GCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
+.+-..|.+.++++.|+.+.+.+ .+.| |+.-|.--.-.|.+.|....|..-++..++.-|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 44556677888888888888776 4445 445566666668888888889888888888888876543
No 401
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.20 E-value=4.5e+02 Score=30.44 Aligned_cols=156 Identities=13% Similarity=0.212 Sum_probs=80.0
Q ss_pred CCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCc--hhhccCChHHHH
Q 048812 70 MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTV--LLNKCGKLKEVC 147 (645)
Q Consensus 70 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~g~~~~A~ 147 (645)
..++.+...++..=...-.+++...++.+-. -|..|+.-|...|..++|++++.+...... --......+.-+
T Consensus 475 ~~n~~~v~~llrlen~~c~vee~e~~L~k~~-----~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii 549 (877)
T KOG2063|consen 475 ETNPGLVGPLLRLENNHCDVEEIETVLKKSK-----KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKII 549 (877)
T ss_pred hcCchhhhhhhhccCCCcchHHHHHHHHhcc-----cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHH
Confidence 3444455555544443445666666665533 278888888888888888888888765221 000011223344
Q ss_pred HHHccCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHH---hhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 048812 148 QLFDKLPNRDV---ISWNTMISCYTSMGMYREGLGLLSKM---GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221 (645)
Q Consensus 148 ~~f~~m~~~~~---~~~n~li~~~~~~g~~~~A~~~~~~m---~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (645)
+.+.....++. ..|.. ..-+.+++.++++|..- ....+.|+. ++ .+......+.+...++.++.
T Consensus 550 ~YL~~l~~~~~~Li~~y~~----wvl~~~p~~gi~Ift~~~~~~~~sis~~~-----Vl-~~l~~~~~~l~I~YLE~li~ 619 (877)
T KOG2063|consen 550 EYLKKLGAENLDLILEYAD----WVLNKNPEAGIQIFTSEDKQEAESISRDD-----VL-NYLKSKEPKLLIPYLEHLIS 619 (877)
T ss_pred HHHHHhcccchhHHHHHhh----hhhccCchhheeeeeccChhhhccCCHHH-----HH-HHhhhhCcchhHHHHHHHhH
Confidence 44444443322 11211 12245566666666551 111122221 11 22334455556666666665
Q ss_pred hCCCCchhHHHHHHHHHHH
Q 048812 222 STMKISGSLLNYLVDMYFK 240 (645)
Q Consensus 222 ~g~~~~~~~~~~li~~y~~ 240 (645)
..-.++....|.++..|++
T Consensus 620 ~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 620 DNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hccccchHHHHHHHHHHHH
Confidence 5545566666666666654
No 402
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.70 E-value=1.8e+02 Score=22.84 Aligned_cols=62 Identities=26% Similarity=0.218 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHcCCch-HHHHHHHHH
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYAKAGRLD-DMSRIRMKL 518 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~y~~l~~~~~~~g~~~-~a~~~~~~m 518 (645)
|....-.+...+...|+++.|...+-++++.+|. +...-..|+.++.-.|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 5567777778888889999999888888887654 4567778888888887754 455555554
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.61 E-value=3.5e+02 Score=26.22 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=27.5
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHH
Q 048812 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278 (645)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~ 278 (645)
-|+.....+...|.+.|++.+|+.-|-. ...++...+..++.-+...|...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~--~~~~~~~~~~~ll~~~~~~~~~~ 138 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL--GTDPSAFAYVMLLEEWSTKGYPS 138 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT--S-HHHHHHHHHHHHHHHHHTSS-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh--cCChhHHHHHHHHHHHHHhcCCc
Confidence 3566777777888888888888877754 33333333333444444344333
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.51 E-value=45 Score=32.70 Aligned_cols=44 Identities=25% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCcch-HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 048812 156 RDVIS-WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199 (645)
Q Consensus 156 ~~~~~-~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (645)
+|..+ ||..|....+.|+.++|+.++++..+.|+.--..||...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34433 567788888888888888888888887766444455433
No 405
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.34 E-value=1.4e+02 Score=32.06 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=57.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHH---HHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS---LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 235 (645)
..-..++.-|.+.++.++|+.++..|--.-. ....|.. +.+.+.+..--.+.+..++.++-.=..|........+
T Consensus 409 l~~~eL~~~yl~~~qi~eAi~lL~smnW~~~--g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~ 486 (545)
T PF11768_consen 409 LGLVELISQYLRCDQIEEAINLLLSMNWNTM--GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATV 486 (545)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhCCcccc--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHH
Confidence 3445688899999999999999999864421 2233333 3333333332333333344443332223322222222
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCc
Q 048812 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292 (645)
Q Consensus 236 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 292 (645)
.-|.. -=.+-|++.|.. +.+.+++++|..+--++..+|.
T Consensus 487 ~ey~d-~V~~~aRRfFhh-----------------LLR~~rfekAFlLAvdi~~~DL 525 (545)
T PF11768_consen 487 LEYRD-PVSDLARRFFHH-----------------LLRYQRFEKAFLLAVDIGDRDL 525 (545)
T ss_pred HHHHH-HHHHHHHHHHHH-----------------HHHhhHHHHHHHHHHhccchHH
Confidence 22222 112223444433 5566777777776655555443
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.81 E-value=83 Score=24.83 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=35.9
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC----C-----chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 468 CRCHQNVKLAEHAFKHLTETDPL----N-----DGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 468 ~~~~g~~~~a~~~~~~~~~~~p~----~-----~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+.||+..|.+.+.+..+.... . ......++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34678888887777777763211 1 12233567778889999999998887754
No 407
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.69 E-value=49 Score=34.54 Aligned_cols=53 Identities=19% Similarity=-0.036 Sum_probs=28.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
.++.+.+++..|..=+.++++++|.....|+.-+.++.+.+++.+|...++.-
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555555555555555555443
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.26 E-value=1.2e+02 Score=20.54 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=23.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 398 (645)
..+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777777777888877777777766666654
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.01 E-value=1.2e+02 Score=23.59 Aligned_cols=39 Identities=5% Similarity=0.055 Sum_probs=28.6
Q ss_pred ccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHH
Q 048812 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~ 178 (645)
..|+.+.|+++++.++ +....|...++++-+.|.-+-|-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3467777888888887 77777888888887777655543
No 410
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.49 E-value=1.1e+02 Score=25.12 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=37.7
Q ss_pred hhccccCCChhhHHHHHhhcCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcC
Q 048812 32 RKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG 87 (645)
Q Consensus 32 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 87 (645)
..++|..|+. ..-|+-|...++|..|..++.+.| ..+....+.|-..+.+.|
T Consensus 58 ~~~sGy~PtV---iD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 58 DDFSGYNPTV---IDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred CCccCCCChH---HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Confidence 3445666764 455688999999999999999999 566776776665554443
No 411
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.32 E-value=7e+02 Score=29.01 Aligned_cols=117 Identities=13% Similarity=0.133 Sum_probs=62.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCC-----
Q 048812 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI----- 337 (645)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~----- 337 (645)
-|..|+.-|...|+.++|++++.+....+..+-.... +.-+.+-.++.+.+-..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~---------------------~~~e~ii~YL~~l~~~~~~Li~ 564 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL---------------------DGLEKIIEYLKKLGAENLDLIL 564 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchh---------------------hhHHHHHHHHHHhcccchhHHH
Confidence 4788999999999999999999888742211100000 00111333333333221
Q ss_pred --------CcHHHHHHHHhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048812 338 --------DNIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401 (645)
Q Consensus 338 --------~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 401 (645)
.+.+...++|-.-.. .....-. -+-.|......+-++..++.+....-.++..-.+.++.-|.
T Consensus 565 ~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 565 EYADWVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 134444444443100 0011111 22345566677788888888877655666666666666554
No 412
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.82 E-value=2.2e+02 Score=23.98 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=33.1
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 048812 476 LAEHAFKHLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 476 ~a~~~~~~~~~--~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
....+|..|.. ++..-+..|...+..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35677888876 556677788889999999999999999885
No 413
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=37.73 E-value=96 Score=26.44 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=52.5
Q ss_pred CEEEEEEeCC-CCCcChHHHHHHHHHHHHHHHHcCcc-hhh-hhhhHHHHHHhhhccCCCCCeEEEEcccccc------C
Q 048812 536 GFVHKFTSGD-IFNPHSEEIYLMLNEIEMTLQQQGLQ-ETS-LQHRERLAVAFGLISTSEKTTIRIVNNLRIC------G 606 (645)
Q Consensus 536 ~~~~~f~~~~-~~~~~~~~~~~~l~~l~~~m~~~g~~-~~~-~~~se~la~~~~l~~~~~~~~~~~~~n~~~c------~ 606 (645)
+..-.|..|| ..+|++.++-..|.+|.+++....+. -.. .-....||..||+.+.|. +-+.||=..- .
T Consensus 35 ~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPT---Ll~FkdGk~v~~i~G~~ 111 (132)
T PRK11509 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPA---TLVFTGGNYRGVLNGIH 111 (132)
T ss_pred CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCE---EEEEECCEEEEEEeCcC
Confidence 3344688898 57899999999999999888421122 122 445689999999998873 4555543221 2
Q ss_pred CcchhHHHhhhccCe
Q 048812 607 DCHSFMKVTSQVYNR 621 (645)
Q Consensus 607 ~~~~~~~~~s~~~~~ 621 (645)
+-....+.|.++..|
T Consensus 112 ~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 112 PWAELINLMRGLVEP 126 (132)
T ss_pred CHHHHHHHHHHHhcC
Confidence 334445555554443
No 414
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.72 E-value=1e+02 Score=20.77 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=17.1
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 048812 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200 (645)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (645)
.+.|-..++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554444
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.68 E-value=1.8e+02 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=17.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
+.......|+.++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444466778888888888888774
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.66 E-value=2e+02 Score=22.49 Aligned_cols=65 Identities=5% Similarity=0.019 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHH
Q 048812 57 FERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEV 123 (645)
Q Consensus 57 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 123 (645)
..++++.++..|+- +......+-.+--..|+.+.|+++++.++ +....|...++++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 45788888888843 33333333333336699999999999999 8888899999999877764433
No 417
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=4.9e+02 Score=26.75 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHhcCChHHHHHHHHHHHhcCCCCc-----
Q 048812 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS------------LLRACRCHQNVKLAEHAFKHLTETDPLND----- 492 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~------------ll~a~~~~g~~~~a~~~~~~~~~~~p~~~----- 492 (645)
..|.+.+-.+|++++|.+++.+.+++ ||++ -++-|...+|+-.|.-+-+++....-+.+
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 34566778899999999999998642 3333 24557888999999988888876332222
Q ss_pred --hhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEE
Q 048812 493 --GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534 (645)
Q Consensus 493 --~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~ 534 (645)
..|..++.+....+.+=++-+.++..-+.|-.+...--|+.+
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 367889999989999999999999998877655543445543
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.29 E-value=2.1e+02 Score=24.13 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 373 KAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 373 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
+..+-+.......+.|+....-.-|.||.+.+++..|.++|+-++.+. .+.-..|-.+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH---------HHHHHHHHh
Confidence 334444555556678888888888888888888888888888777432 333335655543 344555665
Q ss_pred CC
Q 048812 453 PI 454 (645)
Q Consensus 453 ~~ 454 (645)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 419
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.86 E-value=2e+02 Score=26.16 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=18.8
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048812 433 VDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a 467 (645)
+-.|.+.|.+++|.+++++.-..|+......-+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 34466666666666666665334554444433333
No 420
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.67 E-value=1.2e+02 Score=27.23 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 048812 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 443 (645)
.-.|.++++.+.+ .+...+..|.-.-++.+.+.|-+.
T Consensus 41 hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 41 AISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEE
Confidence 3345555555552 233334333333445555555444
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=35.40 E-value=5.9e+02 Score=27.31 Aligned_cols=132 Identities=12% Similarity=0.102 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC------hHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK------MQHY 429 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~ 429 (645)
..|-.++..|..+ ..++-..+|+++.+. .-|.+.+..-+-.+...++.+.+..+|.++.. .+.|. .+.|
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evW 174 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVW 174 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHH
Confidence 3444555555555 445555566655553 23344444444444444666666666665552 23331 2344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 430 GCMVDLLGRAGHLEESANFITSM----PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m----~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.-|+..- ..+.+..+.+..++ +...-.+.+.-+-.-|....|+.+|++++..+++.+..+..+
T Consensus 175 eKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 175 EKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred HHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence 4444322 12344444444333 222334444555555666677777777777776665544433
No 422
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.98 E-value=2e+02 Score=26.95 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHhcCC-------hHHHHHHHHHHHhcC--CC----CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 467 ACRCHQN-------VKLAEHAFKHLTETD--PL----NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 467 a~~~~g~-------~~~a~~~~~~~~~~~--p~----~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.|+..|+ +..|...|++..+.+ |. .......++.++.+.|+.++|.+.+.++...+
T Consensus 127 lyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 127 LYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3555555 344555666665533 22 12455678888899999999999998886543
No 423
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.95 E-value=8.6e+02 Score=29.08 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQ 427 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 427 (645)
.-|-..+..+-+++..+.+.++-...++. +.|| ..+++.+.+-....|.+-+|.... .+ .|| ..
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~----npdserrrd 1055 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR----NPDSERRRD 1055 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc----CCcHHHHHH
Confidence 34667888899999999999987777664 4444 245566666667777777776543 32 454 34
Q ss_pred HHHHHHHHHHHcCCHHH------------HHH-HHHhCC--CCCC-HHHHHHHHHHHHhcCChHHHHH-HHHHHHhcCCC
Q 048812 428 HYGCMVDLLGRAGHLEE------------SAN-FITSMP--IPPD-VSIWSSLLRACRCHQNVKLAEH-AFKHLTETDPL 490 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~------------A~~-~~~~m~--~~pd-~~~~~~ll~a~~~~g~~~~a~~-~~~~~~~~~p~ 490 (645)
...-++-.+..+|.++. ..+ +++... ..-+ ...|+.|-.-+...+|+.+|-. +|+....++.+
T Consensus 1056 cLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred HHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 55667777888887643 333 232221 1111 1234444444555667666554 46666666654
No 424
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.72 E-value=3.5e+02 Score=28.66 Aligned_cols=290 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC-----------------CCCcccHHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD-----------------EPEIKIWNSIIENQ 114 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-----------------~~~~~~~~~li~~~ 114 (645)
+..+...++...+...|....++++|.-+..|.+.|....-..+-+-.. ..+.+.+......|
T Consensus 31 ~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 31 SEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred cchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Q ss_pred HHcCChhHHHHHHHHHhhcC----------------chhhccCChHHHHHHHccCCC------CCcchHHHHHHHHHhcC
Q 048812 115 LINGYPQEVFAIYLYLVTRT----------------VLLNKCGKLKEVCQLFDKLPN------RDVISWNTMISCYTSMG 172 (645)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~----------------~~~~~~g~~~~A~~~f~~m~~------~~~~~~n~li~~~~~~g 172 (645)
.....+.+|+++.......- .+|......++|+.+++-+.+ -+.+.-+.=-....+.+
T Consensus 111 yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~ 190 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTL 190 (696)
T ss_pred eeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccC
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHc
Q 048812 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252 (645)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 252 (645)
.+..|..-|.-. .|-......-++++....++..++.-...+.... ..+....----..+.-.|++.+|.+++.
T Consensus 191 s~~aAe~s~~~a-----~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~ 264 (696)
T KOG2471|consen 191 SPSAAERSFSTA-----DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLL 264 (696)
T ss_pred Ccchhcccchhh-----ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHH
Q ss_pred ccCCCCC----------ChhhHHHHHHHHHhcCCHHHHHHHHHhccc----------CCchhHHHHHHhhhccCCchhhh
Q 048812 253 RYEIDEV----------DVVLWTTLVSGYVKSNERDEARRLFDEMVE----------RNLISWTLMISGMLNQDAEFKYK 312 (645)
Q Consensus 253 ~m~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~t~~~ll~~~~~~~~~~~~~ 312 (645)
..-.... .-+.||.|.-.+.+.|.+..+..+|.+..+ ....+++..-
T Consensus 265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~------------- 331 (696)
T KOG2471|consen 265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ------------- 331 (696)
T ss_pred hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc-------------
Q ss_pred hhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048812 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392 (645)
Q Consensus 313 a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 392 (645)
.+.........-.|...|++-.|.+.|.+.... ...+...
T Consensus 332 ---------------------------------------nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrl 371 (696)
T KOG2471|consen 332 ---------------------------------------NKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRL 371 (696)
T ss_pred ---------------------------------------ccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHH
Q ss_pred HHHHHHHH
Q 048812 393 FIALLSAC 400 (645)
Q Consensus 393 ~~~ll~a~ 400 (645)
|..+..+|
T Consensus 372 WLRlAEcC 379 (696)
T KOG2471|consen 372 WLRLAECC 379 (696)
T ss_pred HHHHHHHH
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.72 E-value=66 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~ 383 (645)
.-.+|.+|.+.|++++|.+..+++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44679999999999999999988875
No 426
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=34.35 E-value=1.3e+02 Score=23.28 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhH
Q 048812 57 FERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQE 122 (645)
Q Consensus 57 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (645)
...+..++++.|+- +..-.-..-+...+.+.|.++++..+.++..+|.+...++-..|...-
T Consensus 18 ~~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 18 PKYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 34688888888842 222333334456678999999999999999999999999887776443
No 427
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.12 E-value=98 Score=32.26 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=31.8
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 447 NFITSMPIPPDV--SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 447 ~~~~~m~~~pd~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
.+|....++|.. .++++-++.+.+++|+..|-.+.++++++.|..
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 345555666643 467778888999999999999999999999865
No 428
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=33.99 E-value=7e+02 Score=27.76 Aligned_cols=154 Identities=15% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHH--HHHHhccC--cHHH--HHHHHHHhHHhcCCCCC--hHHH
Q 048812 366 AMAGHAQKAIDLFL--------EMEETGTKPDQVTFIAL--LSACSHGG--LVDE--GYDFLSKKSRVYNIKPK--MQHY 429 (645)
Q Consensus 366 ~~~g~~~~A~~l~~--------~m~~~g~~pd~~t~~~l--l~a~~~~g--~~~~--a~~~~~~~~~~~~~~p~--~~~~ 429 (645)
-..|+.+.|+..|. .....+..++...+..+ +..+...+ ..++ ..++++.+.....-.|+ ..++
T Consensus 415 q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a 494 (608)
T PF10345_consen 415 QSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTA 494 (608)
T ss_pred HHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHH
Confidence 34688999999997 34444444444443321 11122222 2222 66667666543333333 3344
Q ss_pred HHHH-HHHHHc---------CCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC-chh
Q 048812 430 GCMV-DLLGRA---------GHLEESANFI-TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD---PLN-DGA 494 (645)
Q Consensus 430 ~~li-~~~~~~---------g~~~~A~~~~-~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---p~~-~~~ 494 (645)
.+++ .++... ..+.++.+.. +..+..--....-+++..-.-.|+..+..........+- |+. ...
T Consensus 495 ~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~L 574 (608)
T PF10345_consen 495 YCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQL 574 (608)
T ss_pred HHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 4443 333211 1234444444 333322122233445554333788877766666655532 222 233
Q ss_pred HH-----HHHHHHHHcCCchHHHHHHHHHH
Q 048812 495 HV-----LLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 495 y~-----~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
|. .+.+.|...|+.++|.....+..
T Consensus 575 W~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 575 WHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 42 45666888899999999887764
No 429
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.68 E-value=2.5e+02 Score=30.86 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCcHH------HHHHHHHHhHHhcCCCCChHHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEET--GTKPDQVTFIALLSACSHGGLVD------EGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~------~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
++..+|..+|++-.+.++++..... |-+.=...++..|....+.|.++ .+.+.+++.. +.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----cCCcchHHHH
Confidence 6778888888888888887777653 22222455666677777777543 2333333322 4556666666
Q ss_pred HHHH
Q 048812 432 MVDL 435 (645)
Q Consensus 432 li~~ 435 (645)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 6543
No 430
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.34 E-value=59 Score=30.51 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=33.3
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 436 LGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
....|+.+.|.+++.+. ...| +...|--+...--+.|+.+.|.+.+++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455556666665554 3223 44566666666666677777777777777766654
No 431
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.13 E-value=3.7e+02 Score=25.34 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-----DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
.|.|+--|.-+..+.+|.+.| +.+.|+.| +...=..-|......|+++.|.+...++. -.-+.-|...+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~-PeiLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN-PEILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC-hHHHccchhHHHHH
Q ss_pred HHH----HHHcCCHHHHHHHHHh
Q 048812 433 VDL----LGRAGHLEESANFITS 451 (645)
Q Consensus 433 i~~----~~~~g~~~~A~~~~~~ 451 (645)
... +.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.64 E-value=2.1e+02 Score=24.78 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 405 (645)
+..-..++..+.+.++.-.|.++++++.+.+...+..|....|..+...|.
T Consensus 20 T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 20 TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 333445666666666666777777777766666555665555555555543
No 433
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.32 E-value=2.4e+02 Score=28.25 Aligned_cols=92 Identities=11% Similarity=0.016 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-P---IPP--DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
.+|.-=.+-|.+..++..|...|.+- . -.| +.+.|+.=..+-...||+..++.=..+++.++|.+...|.-=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444456688899999999998775 1 223 45677777777777899999999999999999999999988888
Q ss_pred HHHHcCCchHHHHHHHHH
Q 048812 501 IYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 501 ~~~~~g~~~~a~~~~~~m 518 (645)
++....++++|....++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888888877776655443
No 434
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.27 E-value=1.7e+02 Score=30.41 Aligned_cols=75 Identities=21% Similarity=0.211 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccC
Q 048812 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306 (645)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~ 306 (645)
..|+.-|.-.|++.+|.+...++.|+-- ..+.+-+++.+.-+.|+-...+.+++..-..+.+|.+.|-.||-+..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhh
Confidence 3466668888999999999998666643 46789999999999999888888888888899999999998887653
No 435
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.07 E-value=67 Score=23.16 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGA 186 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~ 186 (645)
.+|.||.+.|++++|.+..+++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 568999999999999999988765
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.94 E-value=3.2e+02 Score=22.97 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 048812 373 KAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLS 414 (645)
Q Consensus 373 ~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 414 (645)
.+.++|..|...|+--. +.-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666555433 3344444445555566666666554
No 437
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=30.34 E-value=6.6e+02 Score=26.37 Aligned_cols=58 Identities=9% Similarity=0.125 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 429 YGCMVDLLGRAGHLEESANFITSMPI--PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m~~--~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
...|+.-|...|.+.||...++++++ -...+.+.+++-+.-+.|+-+.-..+++....
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34677788999999999999999854 34677888999888888887755555555544
No 438
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=29.72 E-value=6.4e+02 Score=26.02 Aligned_cols=35 Identities=11% Similarity=-0.168 Sum_probs=24.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL 397 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 397 (645)
..+.+.+++..|.++|+++.....+|+..++...+
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~ 172 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAM 172 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHH
Confidence 34556788999999999998876666655444333
No 439
>PRK12798 chemotaxis protein; Reviewed
Probab=28.74 E-value=6.9e+02 Score=26.05 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=86.1
Q ss_pred hhHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 048812 355 VYLWTSVIAAY-AMAGHAQKAIDLFLEMEETGTKPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429 (645)
Q Consensus 355 ~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (645)
...|-+|+.+- ....++.+|+++|++..-. -|- ......-+......|+.+++..+-..-.+.|.-.|=...|
T Consensus 147 lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F 224 (421)
T PRK12798 147 LGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQF 224 (421)
T ss_pred hhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHH
Confidence 33444555443 3456788999999887652 343 3344445556678899888877766666566556643333
Q ss_pred -HHHHHHHHH---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 430 -GCMVDLLGR---AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 430 -~~li~~~~~---~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
..++..+.+ .-..+.-.+++..|.-.--..+|..+...-...|+.+.|....++++.+..
T Consensus 225 ~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~ 288 (421)
T PRK12798 225 AQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLAD 288 (421)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcc
Confidence 223333333 334556666777775333456888889999999999999999999998763
No 440
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.63 E-value=1.2e+02 Score=24.80 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCc
Q 048812 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR--DLEMGKNLHLFLEESTMKIS 227 (645)
Q Consensus 162 n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~ 227 (645)
+.++..|...|+.++|...+.++.... --......++..+...+ ..+..-.++..+.+.+.-+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~ 71 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK 71 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence 456777888899999998888863221 11122333333333332 23334455556665554433
No 441
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=27.92 E-value=3.3e+02 Score=25.81 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=50.6
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 468 ~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
....+|.+.+.+++.+++++-|+....|..+...-.++|+.+.|.+.+++..+.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678999999999999999999999999999999999999999999998877553
No 442
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=27.80 E-value=4.8e+02 Score=23.96 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHh-------------cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRV-------------YNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~-------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
+++..|.+.-++.+|+++++.|.+. .+..|.-...|.-...+.+.|.+|.|..++++-
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 4555566666777777777666531 012233455666777788888888888888765
No 443
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.68 E-value=2.1e+02 Score=27.09 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=37.1
Q ss_pred HHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc
Q 048812 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205 (645)
Q Consensus 147 ~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (645)
..+|+-..+|.......++..+ ..+++++|++.+.++.+.|..|.. ..+++.+++-.
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~ 284 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLFRVVKN 284 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHh
Confidence 3344444456666666777654 456789999999999888887654 34455555543
No 444
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=27.66 E-value=31 Score=33.71 Aligned_cols=71 Identities=10% Similarity=0.205 Sum_probs=53.7
Q ss_pred HHHHHHHHcCcchhhhhhhHHHHHHhhhccCCCCCeEEEEccccccCCcchhHHHhhhccCeeEEEecCCccccccCc
Q 048812 560 EIEMTLQQQGLQETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGG 637 (645)
Q Consensus 560 ~l~~~m~~~g~~~~~~~~se~la~~~~l~~~~~~~~~~~~~n~~~c~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~~g 637 (645)
+|+.+|++.|.+..- ..+.|.|..||-++.|||..- |+|----+...|.....|..+++==.|.|..-+-|
T Consensus 237 DLY~EM~E~gVI~l~-~~~SKvaLV~GQMNePPGARa------RV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAG 307 (521)
T KOG1350|consen 237 DLYHEMIESGVINLE-GETSKVALVYGQMNEPPGARA------RVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAG 307 (521)
T ss_pred HHHHHHHhcCeeecc-CCcceEEEEeeccCCCCCcee------eeeeecccHHHHhhccccceEEEeehhhhhhhccc
Confidence 678899999987322 223588999999999999874 45555567788999999998888777877544444
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.62 E-value=3.4e+02 Score=28.21 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHH
Q 048812 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIE 341 (645)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~ 341 (645)
.+.-.|++.++-.|++..|+++++.+.- +.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl-~~------------------------------------------------- 152 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDL-NK------------------------------------------------- 152 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCc-cc-------------------------------------------------
Confidence 4556678889999999999999887642 11
Q ss_pred HHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048812 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382 (645)
Q Consensus 342 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 382 (645)
..+|...+.-.+.++--+.-+|...+++.+|++.|....
T Consensus 153 --~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 153 --KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred --chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012333334456677778888899999999999988764
No 446
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.61 E-value=9.3e+02 Score=27.20 Aligned_cols=33 Identities=27% Similarity=0.164 Sum_probs=25.1
Q ss_pred CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 048812 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222 (645)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (645)
.+..|| |..+..++.-..+.+.+.+++..+.+.
T Consensus 207 ~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 207 KLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred cCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 344566 555778888889999999999888873
No 447
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=27.17 E-value=3.8e+02 Score=22.51 Aligned_cols=58 Identities=10% Similarity=-0.072 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH-------HhcCCCCchhHH----HHHHHHHHcCCchHHHHHHHHH
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHL-------TETDPLNDGAHV----LLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~-------~~~~p~~~~~y~----~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+..|-.++...|++++++...++. =+++.+.-..|+ .-..++...|+.++|.+.|+..
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 333444444444444443333333 334444434443 2344567788999988887754
No 448
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.09 E-value=3e+02 Score=24.99 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=24.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.+..|.+.|.+++|.+++++..+ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 44569999999999999999998 7766443
No 449
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=26.88 E-value=6.6e+02 Score=25.21 Aligned_cols=139 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCC------------HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 425 KMQHYGCMVDLLGRAGH------------LEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~------------~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
|+.+|-.+++.--..-. .+.-+.++++. ..+-+...+..+|..+.+..+.+...+-+++++..+|.
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~ 97 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG 97 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q ss_pred CchhHHHHHHHHHH---cCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 048812 491 NDGAHVLLANIYAK---AGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567 (645)
Q Consensus 491 ~~~~y~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 567 (645)
+...+...++.... .-.+++...++.+....=.....+. .......-.....+...+-++..-+++
T Consensus 98 ~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~-----------~~~~~~~~~~e~~~l~v~~r~~~fl~~ 166 (321)
T PF08424_consen 98 SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR-----------MTSHPDLPELEEFMLYVFLRLCRFLRQ 166 (321)
T ss_pred ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc-----------cccccchhhHHHHHHHHHHHHHHHHHH
Q ss_pred cCcchhh
Q 048812 568 QGLQETS 574 (645)
Q Consensus 568 ~g~~~~~ 574 (645)
.||.|..
T Consensus 167 aG~~E~A 173 (321)
T PF08424_consen 167 AGYTERA 173 (321)
T ss_pred CCchHHH
No 450
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.86 E-value=6.4e+02 Score=25.08 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----------cCCHHH
Q 048812 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR----------AGHLEE 444 (645)
Q Consensus 375 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 444 (645)
.++|+.|.+.++.|.-..|..+.-.+++.=.+...+.+|+.+.. .|. -|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s----D~~--rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS----DPQ--RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc----Chh--hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 57888899999999999988888888888888889999998874 222 24444444432 478888
Q ss_pred HHHHHHhCC
Q 048812 445 SANFITSMP 453 (645)
Q Consensus 445 A~~~~~~m~ 453 (645)
-.++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 888888764
No 451
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=26.60 E-value=2.4e+02 Score=30.55 Aligned_cols=135 Identities=10% Similarity=-0.043 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHhccC--cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC--CHHH
Q 048812 386 TKPDQVTFIALLSACSHGG--LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP--DVSI 460 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--d~~~ 460 (645)
--|+..|...++.-...-- .-+-|-.++..|. +.+.|--...|.-.--+--.|+...|.+.+... ...| ..+.
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 3467766666665444322 2334555555555 234443222222222223457888888877665 2233 2233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
...|.+...+.|-...|-.++.+.+.+....|-++..+.++|....+.+.|++.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 44566667777888889999999999887778899999999999999999999988876544
No 452
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.54 E-value=3.5e+02 Score=21.92 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhcccCCchhHHHHHHhhh
Q 048812 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN--ERDEARRLFDEMVERNLISWTLMISGML 303 (645)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~t~~~ll~~~~ 303 (645)
..++.-|...|++++|..-+.++..+......-..+|......+ .-+....++..+.+.+..+-+.+..||-
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~ 79 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFW 79 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 34666778888888888888875444222222333344333332 3344555666666666666666665443
No 453
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=26.50 E-value=2.3e+02 Score=22.23 Aligned_cols=60 Identities=5% Similarity=0.113 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCCh
Q 048812 57 FERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYP 120 (645)
Q Consensus 57 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 120 (645)
...+...+++.|+-. ..-.-...+...+.+.+.++++.++.++..+|..+..++-..+..
T Consensus 22 ~~~v~~~L~~~gvlt----~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDILT----DSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCCC----HHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 345788888887532 222233344556789999999999999999999999998665543
No 454
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=25.87 E-value=9.6e+02 Score=26.76 Aligned_cols=216 Identities=12% Similarity=0.152 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCC-CCCChhhHHHHHHHHHhcCC-------HHHHHHHHHhccc--CCchhHHHHHHhh
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEI-DEVDVVLWTTLVSGYVKSNE-------RDEARRLFDEMVE--RNLISWTLMISGM 302 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~--~~~~t~~~ll~~~ 302 (645)
++|--+.|||++++|.++...... .++....+-..+..|....+ -+.....|++..+ ++.-+|...+-..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 356667788888888888833111 12334455666666665422 2344444444431 1112222222111
Q ss_pred hccCCchhhhhh-ccccchhhHHHHHHHHHHcCCCCC-------cHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCH
Q 048812 303 LNQDAEFKYKSC-ASIGALYHGIWVHVYIKKNQISID-------NIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHA 371 (645)
Q Consensus 303 ~~~~~~~~~~a~-~~~~~l~~g~~i~~~~~~~~~~~~-------~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 371 (645)
.-..|. +-... .-....+.=-|++-.+++..-..+ .+++-.+......+ ......-.....+.-.|++
T Consensus 196 lg~cD~-~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~LlLtgqF 274 (613)
T PF04097_consen 196 LGRCDL-SRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSNPLLYFQVLLLTGQF 274 (613)
T ss_dssp HHT--C-CC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------HHHHHHHTT-H
T ss_pred HhcCCc-cccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHhhH
Confidence 100000 00000 111233444566666666544221 23333333322222 1111111234556678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc---CCHHHHHHH
Q 048812 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA---GHLEESANF 448 (645)
Q Consensus 372 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~ 448 (645)
+.|++.+-+ ..+...|.+.+...+..+.- +.-....-..+.....-.|..-.+..||..|.+. .+..+|.+.
T Consensus 275 E~AI~~L~~--~~~~~~dAVH~AIaL~~~gL---L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al~Y 349 (613)
T PF04097_consen 275 EAAIEFLYR--NEFNRVDAVHFAIALAYYGL---LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDPREALQY 349 (613)
T ss_dssp HHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HHHHHHH
T ss_pred HHHHHHHHh--hccCcccHHHHHHHHHHcCC---CCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHHHH
Confidence 999998877 23345566666655554332 2221111122221111122235678888888763 577888888
Q ss_pred HHhCCC
Q 048812 449 ITSMPI 454 (645)
Q Consensus 449 ~~~m~~ 454 (645)
+--+..
T Consensus 350 ~~li~~ 355 (613)
T PF04097_consen 350 LYLICL 355 (613)
T ss_dssp HHGGGG
T ss_pred HHHHHH
Confidence 776643
No 455
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.72 E-value=1.1e+03 Score=27.29 Aligned_cols=165 Identities=11% Similarity=0.107 Sum_probs=82.7
Q ss_pred HHHHHcCChhHHHHHHHHHh-hcC-------chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048812 112 ENQLINGYPQEVFAIYLYLV-TRT-------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183 (645)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~-~~~-------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~ 183 (645)
..|...|.++.|+++-+.-. ..+ +.|-..+++..|-+++.++ ..++..+.--+....+.+ +++.|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 45667778887777654331 111 4444556666676666665 234444444455555544 5555543
Q ss_pred HhhCCCCCChhhHHHHHHH-----H-hcCCChH----HHHHHHH----HH----HH-hCCCCchhHHHHHHHHHHHcCCH
Q 048812 184 MGAEGVSPDEVTMVSLISA-----R-TKLRDLE----MGKNLHL----FL----EE-STMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 184 m~~~g~~p~~~t~~~ll~~-----~-~~~~~~~----~a~~~~~----~~----~~-~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
=+-..++|...+-..+|.. + .+.++++ ++..-+. .. .+ .....+.....+........|+.
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~ 520 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQ 520 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCH
Confidence 3333445544433332222 1 1223222 2221111 11 11 11122222333444455556666
Q ss_pred HHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 245 ~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
+....+-.- ..-|..++.-+.+.+.+++|++++..-.
T Consensus 521 e~ll~fA~l-------~~d~~~vv~~~~q~e~yeeaLevL~~~~ 557 (911)
T KOG2034|consen 521 EELLQFANL-------IKDYEFVVSYWIQQENYEEALEVLLNQR 557 (911)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 665554443 2236678888899999999999887664
No 456
>PRK14135 recX recombination regulator RecX; Provisional
Probab=25.67 E-value=6.1e+02 Score=24.46 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048812 324 IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT-SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402 (645)
Q Consensus 324 ~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 402 (645)
.++...+.+.|+..+.++.+..-+....--|-..|. ..+..+...+. ..-.++-.++...|+.++.+. .++..+..
T Consensus 75 ~el~~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~-~g~~~I~~kL~~kGi~~~~Ie--~~l~~l~~ 151 (263)
T PRK14135 75 KEVRDYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTGD-KGPRVIKQKLLQKGIEDEIIE--EALSEYTE 151 (263)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHcCCCHHHHH--HHHHhCCh
Confidence 567778888888877788887777666544443333 33344433332 234467778888888766433 44554544
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC-HHHHHHHHHhCCCCCCH
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH-LEESANFITSMPIPPDV 458 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~pd~ 458 (645)
.+.++.+..+.......+.-.|......-+...+.+.|- .+.+.++++.+....|.
T Consensus 152 ~~~~d~a~~~~~k~~~~~~~~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~ 208 (263)
T PRK14135 152 EDQIEVAQKLAEKLLKKYQKLPFKALKQKIIQSLLTKGFSYEVIKAALEELDLEQDE 208 (263)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHcccCCCh
Confidence 556666666655544333322333344566677777774 45566677776544343
No 457
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.09 E-value=2.2e+02 Score=20.77 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=33.7
Q ss_pred CcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048812 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401 (645)
Q Consensus 351 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 401 (645)
..+....++.++..++...-.++++..+.++...|. .+..+|.--+..++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 345666778888888887778888888888887775 35555655555444
No 458
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.84 E-value=6.5e+02 Score=24.45 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=28.5
Q ss_pred CCHHHHHHHHcccCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 242 GKIGEAQKLLGRYEIDEV-----DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 242 g~~~~A~~~~~~m~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
..+++|..-|+.....++ .-.+.-.||..+.+.|++++.++.+.+|.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 356666666655322222 22334457777888888888888777764
No 459
>PHA03100 ankyrin repeat protein; Provisional
Probab=24.82 E-value=8.5e+02 Score=25.81 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCChhh--hhhHHHH-----HHhcCChHHHHHHHhhCCC
Q 048812 59 RIHSHLITTNLMRDPQI--STQVFEF-----LVFTGDLGYAQQIIRQGDE 101 (645)
Q Consensus 59 ~~~~~~~~~g~~~~~~~--~~~ll~~-----~~~~g~~~~A~~~f~~~~~ 101 (645)
.+.+.+++.|..++... ....+.. .+..|+.+-+.-+++....
T Consensus 49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~ 98 (480)
T PHA03100 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN 98 (480)
T ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC
Confidence 35555566776655432 2344555 6667777777777766543
No 460
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=24.30 E-value=33 Score=25.04 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=17.2
Q ss_pred eeEEEecCCccccccCccccCC
Q 048812 621 REIVIRDNGRFHRFQGGQCSCR 642 (645)
Q Consensus 621 ~~i~~rd~~~~h~~~~g~csc~ 642 (645)
..|=+.|.+-.|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4677889999999999997644
No 461
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.22 E-value=2.2e+02 Score=21.79 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=29.1
Q ss_pred cccCCChhhHHHHHhhcCCHHHHHHHHHHHHHhCCCCChhhhhhH
Q 048812 35 ANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQV 79 (645)
Q Consensus 35 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 79 (645)
.|..|+ ....|+.|..-++|..+..++.+.| ..++...+.|
T Consensus 31 ~gy~Pt---V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 31 SGYNPT---VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred CCCCch---HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 355555 4455677888899999999999998 5555555544
No 462
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.06 E-value=2.3e+02 Score=20.40 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=21.9
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR 203 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (645)
+...|++-+|-++++.+-.....|....+..+|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A 44 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLA 44 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHH
Confidence 456788888888888887643334444555565543
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.62 E-value=4.7e+02 Score=25.05 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=45.5
Q ss_pred cHHHHHHHHhhcCcCChhHH--HHHHHHHHHcCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhccCcHHHHHH
Q 048812 339 NIELAYDLFSEISEKNVYLW--TSVIAAYAMAGHAQKAIDLFLEMEE----TG-TKPDQVTFIALLSACSHGGLVDEGYD 411 (645)
Q Consensus 339 ~~~~A~~~f~~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~pd~~t~~~ll~a~~~~g~~~~a~~ 411 (645)
-++.|...|......-...+ -.|..-|...|++++|+++|+.+.. +| ..+...+...++.+..+.|+.+....
T Consensus 160 lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 160 LLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666677765555333322 2456678888888888888887742 23 22344555666666667777766555
Q ss_pred HH
Q 048812 412 FL 413 (645)
Q Consensus 412 ~~ 413 (645)
+-
T Consensus 240 ~~ 241 (247)
T PF11817_consen 240 TS 241 (247)
T ss_pred HH
Confidence 43
No 464
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=23.53 E-value=1.7e+02 Score=28.88 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSS-LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
|+..|...+.-..+.|.+.+...++.+. ...| |+..|-. ----+..++|++.+..+|.+.+.++|++|..|..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 4555555555445555566666666554 2223 4555543 2223667899999999999999999999887653
No 465
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.83 E-value=3.1e+02 Score=23.76 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=40.4
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
+...+.+.|++++.. -..++..+...++.-.|.++|..+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 344556667665543 2335556666666677888888888777666555555556777777754
No 466
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.63 E-value=1.8e+02 Score=23.74 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 407 (645)
.++..+...+..-.|.++++++.+.+..++..|....|..+...|.+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345555556666678888888888777778777777777777776543
No 467
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.43 E-value=4.2e+02 Score=21.43 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHHhC
Q 048812 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR--DLEMGKNLHLFLEEST 223 (645)
Q Consensus 162 n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g 223 (645)
..++.-|...+++++|.+.+.++..... .......++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 4577788899999999999988754321 2223334444444442 2334445555555555
No 468
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.43 E-value=2.8e+02 Score=25.38 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=17.3
Q ss_pred chHHHHHH-HHHhcC--ChHHHHHHHHHHhhC
Q 048812 159 ISWNTMIS-CYTSMG--MYREGLGLLSKMGAE 187 (645)
Q Consensus 159 ~~~n~li~-~~~~~g--~~~~A~~~~~~m~~~ 187 (645)
..|..+.. +++.++ .+-+|.-+|......
T Consensus 67 ~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 67 AGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 44555554 666655 355777777666554
No 469
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.22 E-value=1.2e+03 Score=26.55 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=12.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 048812 361 VIAAYAMAGHAQKAIDLFLEM 381 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m 381 (645)
|...|...+++..|+.++-..
T Consensus 511 La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred HHHHHHHccChHHHHHHHHhc
Confidence 555666666666666555443
No 470
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=22.16 E-value=4.9e+02 Score=22.03 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW-SSLLRACRCHQNVKLAEHAFKH 483 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~-~~ll~a~~~~g~~~~a~~~~~~ 483 (645)
..+-.++.-++.=.|..++|.++++..+.-++-... .-++..|+...+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334445555555566666666666655433332222 2355555555555444444433
No 471
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.15 E-value=3.5e+02 Score=28.18 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEV---------DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
..-.|++.++-.|++..|.++++.+....+ .+.++--+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888899999999999988654332 34456667778889999999999998764
No 472
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.13 E-value=3.9e+02 Score=20.87 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=45.5
Q ss_pred ChhhHHHHHhh-c-CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC
Q 048812 40 VSLDVIMVERS-C-SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD 100 (645)
Q Consensus 40 ~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 100 (645)
+...|...++. + -+.++. ++++.....|+..|+.++-.+++...-+=.++...+++..|.
T Consensus 9 ~~~~~k~~~~rk~~Ls~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLSAEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccCHHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34445444444 2 334444 899999999999999999999999888888888888887765
No 473
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=21.75 E-value=1.9e+02 Score=22.38 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=26.9
Q ss_pred ccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHH
Q 048812 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A 177 (645)
...+.+.|.++++.++.+...+|.++..++-..|+..-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345567777777777777777777777777776655443
No 474
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=21.51 E-value=4.4e+02 Score=28.17 Aligned_cols=89 Identities=12% Similarity=0.242 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--------chhHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN--------DGAHVL 497 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--------~~~y~~ 497 (645)
+..|-..+.-|+..+++++|.++-+..+ +...|.+|......+.+...++.++..+.+.+.-. +.--..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 4556677778889999999999988764 56789999888888899888888888777654211 111223
Q ss_pred HHHHHHHcCCchHHHHHHHH
Q 048812 498 LANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~ 517 (645)
+.....-.|+..||.-++..
T Consensus 650 mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILLH 669 (737)
T ss_pred HHHHHHHhccchhhhHHHHh
Confidence 44444556777777776643
No 475
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.08 E-value=4.3e+02 Score=29.68 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=21.1
Q ss_pred cccCCcchhHHHhhhccCeeEEEecCCc
Q 048812 603 RICGDCHSFMKVTSQVYNREIVIRDNGR 630 (645)
Q Consensus 603 ~~c~~~~~~~~~~s~~~~~~i~~rd~~~ 630 (645)
..|..-|++.--.|.|.+-.+--||.|.
T Consensus 489 ~~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 489 QKLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhhcCceeeeeehhceecccccccccce
Confidence 4577778887778888888887787664
No 476
>PF15161 Neuropep_like: Neuropeptide-like
Probab=20.96 E-value=35 Score=23.58 Aligned_cols=15 Identities=40% Similarity=0.824 Sum_probs=11.1
Q ss_pred cccccCCcchhHHHhh
Q 048812 601 NLRICGDCHSFMKVTS 616 (645)
Q Consensus 601 n~~~c~~~~~~~~~~s 616 (645)
--|-|.|||.+. |+.
T Consensus 12 esRPCVDCHAFe-fmq 26 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQ 26 (65)
T ss_pred CCCCchhhHHHH-HHH
Confidence 457899999876 444
No 477
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=20.79 E-value=5.5e+02 Score=28.43 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=58.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChH------HHHHHHH
Q 048812 109 SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR------EGLGLLS 182 (645)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~------~A~~~~~ 182 (645)
++..+|+.+|++..+.++++.....+ .| .+.=...||..|+.+.++|.++ .|.++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~-----~~------------~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq 95 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN-----KG------------DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQ 95 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-----cC------------CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 77888888888777777776653211 00 0122345788888888888764 3344444
Q ss_pred HHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 048812 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221 (645)
Q Consensus 183 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (645)
+.. +.-|..||..++.+....-.-..+.-++.+.+.
T Consensus 96 ~a~---ln~d~~t~all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 96 QAR---LNGDSLTYALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred Hhh---cCCcchHHHHHHHhhcChHhHHhccHHHHHHHH
Confidence 443 455888999888877665555555555555554
No 478
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.65 E-value=1.6e+02 Score=24.40 Aligned_cols=49 Identities=12% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 406 (645)
-..++..+...+.+-.|.++++.|.+.|...+..|...-|..+...|.+
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 3456777777777888999999999988888888887778777776643
No 479
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.59 E-value=1.1e+03 Score=25.73 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHHH--HHH-HhcCCChHHHHHHHHHHHH-------hCCCCchhHHHHHHHHHHHcC-
Q 048812 174 YREGLGLLSKMGAEGVSPDEVTMVSL--ISA-RTKLRDLEMGKNLHLFLEE-------STMKISGSLLNYLVDMYFKCG- 242 (645)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~l--l~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~y~~~g- 242 (645)
...|++.++.....|.. ........ ..+ .....|.+.|...+..+.+ .| +....+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45788888887777632 11111111 122 4466788888888888876 44 3334555666666643
Q ss_pred ----CHHHHHHHHcc
Q 048812 243 ----KIGEAQKLLGR 253 (645)
Q Consensus 243 ----~~~~A~~~~~~ 253 (645)
+.+.|..+|..
T Consensus 304 ~~~~d~~~A~~~~~~ 318 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTK 318 (552)
T ss_pred CccccHHHHHHHHHH
Confidence 45567777765
No 480
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=20.47 E-value=4.2e+02 Score=20.67 Aligned_cols=40 Identities=8% Similarity=0.073 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
++|+.....|+..|+.+|..+++...-+=..+...+++..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~ 68 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKS 68 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5666666677777777777776666555555555555555
No 481
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.46 E-value=2.8e+02 Score=22.24 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=15.9
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 489 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
+..|+.+..|.-.|++.|+-+.|.+-|+.
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 44445555555566666665555555543
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.17 E-value=3.3e+02 Score=24.34 Aligned_cols=59 Identities=10% Similarity=0.083 Sum_probs=31.9
Q ss_pred hhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 185 GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 185 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
...|++++..=. .++..+....+.-.|.+++..+.+.+...+..|...-++.+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 444655444322 33333333444556677777777666555555544455666666654
No 483
>PRK14700 recombination factor protein RarA; Provisional
Probab=20.14 E-value=8e+02 Score=24.34 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=45.6
Q ss_pred CCcchHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHhCC
Q 048812 156 RDVISWNTMISCYTS---MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD-----LEMGKNLHLFLEESTM 224 (645)
Q Consensus 156 ~~~~~~n~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 224 (645)
++-..+-.+|+++.+ ..+++.|+-.+.+|++.|-.|....-..++-+....|. +..|...++.....|+
T Consensus 121 k~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 121 REGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred CCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 333444456777765 47899999999999999988877776667766665553 2334444444445553
Done!